Citrus Sinensis ID: 012845

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-----
Protein Sequence
MRIAAFTRGLNCFSRIKTFPYPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSEGIAGRNF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccEEEEcccHHHHHHHHHHHHccccEEEEccccccccccccccccHHHHHHHHHHcccHHHHHHccccccccccEEEEEcccccccEEcccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccEEEEcEEEEEEEEcccccEEEEEEEEccccEEEEEEEcEEEEcccccHHHHcccccccccccccccEEEEEEEccccccccccccccEEEEEEccccEEEEEEEEccccEEEEEEEccccccccccccHHHHHHHHHHHHccccccccEEEEccccccEEEEcccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccccHccccccccccccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHccccEEEEccccccccccccccccHHHHHHHHHcccHHHHHHHHcccHHHcccEEEEEccccccccccccccccccHcccccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHccccEEEEcEEEEEEEEccccEEEEEEEcccccccEEEEEEEEEEEccccccHHHHHHccccccccccccEEEEEEEcccHHHHHHcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccccccccccHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHcccccEEEEcccHcccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccccccccHHHHHHHHcc
Coil and Loop (DISEMBL)
MRIAAFTRglncfsriktfpypygytqcralsdsktivsneAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKnkafsthpqahfiNNRYALVFRKLDGLAEeiersqppvdlwRKFIyctsvtgpilgsvdhmqpqdfekvvspvsvahFSQYKLNKLLLKQLEKLNFKIctsegteglhNHLLQGReilmghecvsvsatDQCINVIASFLkegkcterniqcniligtdgagstVRKLVGIDLVGEKDLQKLVSVHFLSKdlgdyllnerpgmlffIFNTEAIGVLVAhdlkegefilqvpfyppqqnledfspEICEKLIFKLVgwelsdidvidikpwVMHAEVAEKFLCCYNQIIlagdachrfppaggfgmntgvqdaHNLAWKIASVLKdiapasilntyeterkpiaefNTALSVQNFRAAmevpsalgldptiansegiagrnf
Flexible Loop (DISEMBL)
mriaaftrglncfsriKTFPYPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAfsthpqahfinnRYALVFRKLDGLAEEiersqppvdlWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFlkegkcteRNIQCNIligtdgagstVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPsalgldptiansegiagrnf
Low Complexity Region (SEG)
MRIAAFTRGLNCFSRIKTFPYPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYklnklllkqleklnfkICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSEGIAGRNF
Disordered region (IsUnstruct)
**IAAFTRGLNCFSRIKTFPYPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEV*********************
Disordered Region (DISOPRED)
*******************************************VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSEGIAGRNF
Disordered Region (DISEMBL)
MRIAAFTRGLNCFSRIKTFPYPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSEGIAGRNF
Disordered Region (DISPRO)
*RIAAFTRGLNCFSRIKTFPYPYGYTQCRALS*****VSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSEGIAGRNF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRIAAFTRGLNCFSRIKTFPYPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSEGIAGRNF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	455	2.2.26 [Sep-21-2011]
P42534	627	Putative polyketide hydro	yes	no	0.786	0.570	0.303	6e-43
Q05355	555	Putative polyketide hydro	N/A	no	0.756	0.619	0.312	2e-40
P39888	572	Tetracenomycin polyketide	N/A	no	0.793	0.631	0.289	2e-32
Q8KN28	586	2,4-dichlorophenol 6-mono	yes	no	0.786	0.610	0.265	4e-31
P27138	598	2,4-dichlorophenol 6-mono	no	no	0.802	0.610	0.275	6e-30
Q9S158	589	3-(3-hydroxy-phenyl)propi	yes	no	0.725	0.560	0.272	2e-26
P31020	607	Phenol 2-monooxygenase OS	N/A	no	0.817	0.612	0.261	2e-24
Q476N1	618	3-(3-hydroxy-phenyl)propi	no	no	0.725	0.533	0.262	1e-23
Q13QI0	622	3-(3-hydroxy-phenyl)propi	no	no	0.720	0.527	0.260	6e-23
A0KE38	542	3-(3-hydroxy-phenyl)propi	yes	no	0.771	0.647	0.233	1e-21

>sp|P42534|HYDL_STRCO Putative polyketide hydroxylase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=SCO5321 PE=3 SV=2

 Score =  175 bits (444), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 117/386 (30%), Positives = 191/386 (49%), Gaps = 28/386 (7%)

Query: 44  VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAE 103
           VPVL+VG   VGL  S+ L +LG++ +++E++   S HP+    N R   +FR + G   
Sbjct: 21  VPVLVVGGSLVGLSTSVFLGRLGVRHTLVERHAGTSIHPRGRGNNVRTMEIFR-VAGTEP 79

Query: 104 EIERSQPPVDLWRKFIYCTSVTGPILGSV-DHMQPQDFEKVVSPVSVAHFSQYKLNKLLL 162
           +I R+   +      +   ++ G     +   + P       SP S    SQ  L   LL
Sbjct: 80  DIRRAAATLADNHGILQAPTLAGDAGEWLFKQIDPGGGLARFSPSSWCLCSQNDLEPELL 139

Query: 163 KQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTER 222
                L                   G ++  G E +S  A  + +  I    + G+ T  
Sbjct: 140 THATNL-------------------GGDLRFGTELLSFEADTEGVTAIVKSRETGEHT-- 178

Query: 223 NIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF 282
            I+ + L+  DG  S VR+ +GI   G  DL   VS+ F S+ L D ++ +R  ++ ++ 
Sbjct: 179 TIRADYLVAADGPRSPVREQLGIGQSGPGDLFHNVSITFRSRRLAD-VVGDRRFIVCYLT 237

Query: 283 NTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVIDI 341
           +  A G L+  D +E  ++   P++P Q + +EDF+ E C   I + +G    D+++   
Sbjct: 238 DENADGALLPVDNRE-NWVFHAPWHPEQGETVEDFTDERCAAHIRRAIGDPDLDVEITGK 296

Query: 342 KPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIA 401
            PW     VA  +     +++LAGD+ H   P G FG NTG+QDAHNLAWK+A+VL+  A
Sbjct: 297 APWHAAQRVARSYRS--GRVLLAGDSAHEMSPTGAFGSNTGIQDAHNLAWKLAAVLEGWA 354

Query: 402 PASILNTYETERKPIAEFNTALSVQN 427
             ++L+TY+TER+P+AE  +A +   
Sbjct: 355 GEALLDTYDTERRPVAEATSARAAHR 380

Involved in developmentally regulated synthesis of a compound biosynthetically related to polyketide antibiotics which is essential for spore color in Streptococcus coelicolor.
Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) (taxid: 100226)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: -

>sp|Q05355|HYDL_STRHA Putative polyketide hydroxylase OS=Streptomyces halstedii GN=schC PE=3 SV=1

 Score =  166 bits (421), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/378 (31%), Positives = 182/378 (48%), Gaps = 34/378 (8%)

Query: 44  VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAE 103
           VPVL+VG   VGL  S+ L +LG++  ++E++   S HP+    N R   V+R   G+ +
Sbjct: 15  VPVLVVGGSLVGLSTSVFLGRLGVRHMLVERHAGTSVHPRGRGNNVRTMEVYRAA-GVEQ 73

Query: 104 EIERSQPPVDLWRKFIYCTSVTGP----ILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNK 159
            I R+   +      +   S+ G     +L  +D   P       SP S    SQ  L  
Sbjct: 74  GIRRAAATLAGNHGILQTPSLVGDEGEWLLRDID---PGGGLARFSPSSWCLCSQNDLEP 130

Query: 160 LLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKC 219
           +LL    +L                   G EI    E  S       +  +    + G+ 
Sbjct: 131 VLLDHAVEL-------------------GGEIRFSTELQSFEQDPAGVTAVIKSRRSGEH 171

Query: 220 TERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF 279
           T   ++ + L+  DG  S VR+ +GI   G  DL   VSV F S+ L +++  +R  ++ 
Sbjct: 172 T--TVRADYLVAADGPRSPVREQLGIGQSGPGDLFHNVSVTFRSRRLAEFV-GDRHFIVC 228

Query: 280 FIFNTEAIGVLVAHDLKEGEFILQVPFYP-PQQNLEDFSPEICEKLIFKLVGWELSDIDV 338
           ++ N EA G L+  D +E  ++   P+YP   + LEDF+ E C   I + VG    D+++
Sbjct: 229 YLTNPEADGALLPVDNRE-NWVFHAPWYPRAARPLEDFTDERCADHIRRAVGVPDLDVEI 287

Query: 339 IDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK 398
               PW     VA ++     ++ LAGD+ H   P G FG NTG+QDAHNLAWK+A+VL 
Sbjct: 288 TGKAPWHAAQRVARQYRA--GRVFLAGDSAHEMSPTGAFGSNTGIQDAHNLAWKLAAVLG 345

Query: 399 DIAPASILNTYETERKPI 416
             A   +L+TY+ ER+P+
Sbjct: 346 GWAGDGLLDTYDAERRPV 363

Involved in developmentally regulated synthesis of a compound biosynthetically related to polyketide antibiotics which is essential for spore color in Streptomyces halstedii.

Streptomyces halstedii (taxid: 1944)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|P39888|TCMG_STRGA Tetracenomycin polyketide synthesis hydroxylase TcmG OS=Streptomyces glaucescens GN=tcmG PE=3 SV=1

 Score =  140 bits (353), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 114/394 (28%), Positives = 178/394 (45%), Gaps = 33/394 (8%)

Query: 37  IVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFR 96
           I+S E V PVLIVG G  GL  ++ L++ G+ C ++EK++  +   +A  I++R   + R
Sbjct: 11  ILSTEEV-PVLIVGGGLTGLSAALFLSQHGVSCRLVEKHRGTTVLTRASGISSRTMELLR 69

Query: 97  KLDGLAEEIERSQPPVD--LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVS----PVSVA 150
            +      IER    V+   WR+          ++   + +   D E  V+     + V 
Sbjct: 70  GVGLERTVIERGPKLVEGARWRELGQPADQIPWVVIRANGLH--DLENAVTVEEPSLDVG 127

Query: 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVI 210
           H S  +       +LE +        G     N  ++             + T     V 
Sbjct: 128 HLSPTRPYWCGQDRLEPILRDEAVRRGARIDFNTRME-------------AFTADESGVT 174

Query: 211 ASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYL 270
           A+ + +    +  ++   LI  DG  S VR+ +GI   G   +   +SV F   DL D +
Sbjct: 175 ATIVDQATGEQSTVRARYLIAADGVRSPVRETLGITRTGHGTIGNAMSVLF-KADLRDTV 233

Query: 271 LNERPGMLFFIFNTEAIGVL-------VAHDLKEGEFILQVPFYPPQQNLEDFSPEICEK 323
              R  ++ ++ N +  GVL       V     E  +I    F P + + E F+ E C +
Sbjct: 234 KGRR-FVICYLPNPDEPGVLQLPEVPAVLQLFDEDRWIFGFFFDPRETSPEQFTDERCAQ 292

Query: 324 LIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGV 383
           +I    G     ++V   +PW M    A  +     ++ LAGDA H  PPAG FG N G+
Sbjct: 293 IIRTATGLPGLPVEVQMARPWEMSHNSARSYRS--GRVFLAGDAAHVHPPAGAFGANGGI 350

Query: 384 QDAHNLAWKIASVLKDIAPASILNTYETERKPIA 417
           QDAHNLAWK+A+VLK  A  ++L+TYE ER PI 
Sbjct: 351 QDAHNLAWKLAAVLKGTAGDALLDTYEQERLPIG 384

Hydroxylates tetracenomycin A2 at positions C-4, C-4A, and C12A to give tetracenomycin C (TCM C). Hydroxylates as well 9-carboxymethyl-TCM B3 to yield 8-demethyl-TMC C, a side reaction.

Streptomyces glaucescens (taxid: 1907)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q8KN28|TFDB_DELAC 2,4-dichlorophenol 6-monooxygenase OS=Delftia acidovorans GN=tfdB PE=1 SV=3

 Score =  136 bits (342), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 175/396 (44%), Gaps = 38/396 (9%)

Query: 31  LSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNR 90
           +++  T++  +    VL+VG+GP G   ++LL   G+K   + K    S  P++H  N R
Sbjct: 1   MNEKATVIETD----VLVVGSGPAGAASTLLLATYGVKTLCVSKYATTSRTPRSHITNQR 56

Query: 91  YALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSV----DHMQPQDFEKVVSP 146
              V R L GL  E E    P +L  + +YCTS+ G  LG V     H Q +   ++ SP
Sbjct: 57  TMEVMRDL-GLELECEAMASPAELMGENVYCTSLVGDELGRVLTWGTHPQRRADYELASP 115

Query: 147 VSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC 206
             +    Q  L  +++    +                   +G ++    E VS+   +  
Sbjct: 116 THMCDLPQNLLEPIMINHAAR-------------------RGADVRFHTEFVSLKQDE-- 154

Query: 207 INVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDL 266
             V A+        + +I+   LIG DGA S V   VG+ + G+  +   ++V F   DL
Sbjct: 155 TGVTATVRDHLLDRQYDIRAKYLIGADGANSQVVDQVGLPMEGKMGVSGSINVVF-EADL 213

Query: 267 GDYLLNERPGMLFFIF----NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICE 322
             Y+   RP +L+++     +   +G+ V   ++     L +  Y       D +     
Sbjct: 214 TKYV-GHRPSVLYWVIQPGSSVGGLGIGVIRMVRPWNKWLCIWGYDIAGGPPDLNEAHAR 272

Query: 323 KLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTG 382
           +++  L+G     + +     W ++   A +     N++   GDA HR PP  G G NT 
Sbjct: 273 QIVHSLLGDSTIPVKIESTSTWTVNDMYATRLFD--NRVFCMGDAVHRHPPTNGLGSNTS 330

Query: 383 VQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE 418
           +QDA NL WK++ VL+  A   +L TY  ER P+A 
Sbjct: 331 IQDAFNLCWKLSHVLQGKAGPELLATYNEERAPVAR 366

Transforms 2,4-dichlorophenol (2,4-DCP) into 3,5-dichlorocatechol.

Delftia acidovorans (taxid: 80866)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 2

EC: 0

>sp|P27138|TFDB_CUPPJ 2,4-dichlorophenol 6-monooxygenase OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) GN=tfdB PE=3 SV=1

 Score =  132 bits (331), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 112/407 (27%), Positives = 181/407 (44%), Gaps = 42/407 (10%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEI 105
           VL+VG GP G     LL + G++  ++ K    +  P+AH  N R   + R L GL  E 
Sbjct: 9   VLVVGTGPAGASAGALLARYGVRTMLINKYNWTAPTPRAHITNQRTMEILRDL-GLEAEA 67

Query: 106 ERSQPPVDLWRKFIYCTSVTGPILGSV-----DHMQPQDFEKVVSPVSVAHFSQYKLNKL 160
                P DL  +   C S+ G   G +     D  +  D+++  SP S+    Q  L  +
Sbjct: 68  RLYAAPNDLMGENTICASLAGEEFGRIRTWGTDVRRRADYDEC-SPTSMCDLPQNYLEPI 126

Query: 161 LLKQ--LEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEG- 217
           L+K   L+    +  T                  +GHE        Q  + ++S L++  
Sbjct: 127 LVKSAALDGCKVRFDTE----------------YLGHE--------QDADGVSSRLRDRL 162

Query: 218 KCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM 277
              E  ++   LIG DGA S V  +  +DL  E  + K  S++ L +   D  +  RP +
Sbjct: 163 NGEEFTVRSKYLIGADGANSRV--VSDLDLPLEGTMGKSGSINLLFEADLDRYVAHRPSV 220

Query: 278 LFFIF----NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWEL 333
           L+++     +   +G+ V   ++     L +  Y  +Q   + S     +++  L+G + 
Sbjct: 221 LYWVIQPGSDIGGLGIGVVRMVRPWNKWLAIWGYDVEQGPPEISESFARRIVHNLIGDDS 280

Query: 334 SDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKI 393
             + +  I  W ++   A +      ++  AGDA HR PP  G G NT +QD+ NLAWKI
Sbjct: 281 VPLKIEGISTWTVNDMYATRLQ--QGRVFCAGDAVHRHPPTNGLGSNTSIQDSFNLAWKI 338

Query: 394 ASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGL 440
           A VL   A  S+L+TY  ER PIA+     + ++      +  ALGL
Sbjct: 339 AMVLNGTADESLLDTYTIERAPIAKQVVCRANKSLEDFPPIAMALGL 385

Transforms 2,4-dichlorophenol (2,4-DCP) into 3,5-dichlorocatechol.

Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (taxid: 264198)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 2

EC: 0

>sp|Q9S158|MHPA_COMTE 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase OS=Comamonas testosteroni GN=mhpA PE=3 SV=1

 Score =  120 bits (302), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 183/385 (47%), Gaps = 55/385 (14%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEI 105
           VLI+GAGPVGL L+  L   G++  V EK      +P+A  I++  +L   +  GL++++
Sbjct: 16  VLIIGAGPVGLTLANTLGMAGVRVIVAEKLPRIIDYPRAIGIDDE-SLRTLQAAGLSDQV 74

Query: 106 ERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQL 165
           +    P   W +F    + +G    S+   +P+  E   S  +   F Q +++ +L + L
Sbjct: 75  QAHITP-HHWMRFY---TASGQCFASI---EPRTDEYGWSRRNA--FIQPQVDDILYRGL 125

Query: 166 EKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQ 225
           ++ +                    ++L+GHE  S S  D  I      LK+    ER ++
Sbjct: 126 QRFDQV------------------QVLLGHELHSFSQDDAGITAT---LKDADGVERTLR 164

Query: 226 CNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLN-----ERPGMLFF 280
              L+ +DG  S VR+++ +   G     + + V   +  LG   ++     +RP     
Sbjct: 165 AKYLVASDGGNSLVRRMLNVAFEGRTKPNQWIVVDVRNDPLGTPHIDMHCDPQRP----- 219

Query: 281 IFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFS-PEICEKLIFKLVGWELSDIDVI 339
                 +   + H ++  EF++      P +  E  S PE   +L+ K+V  +   +D I
Sbjct: 220 -----YVSAALPHGIRRFEFMVM-----PGETEEQLSRPENLAQLMRKVVA-DPDKVDYI 268

Query: 340 DIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD 399
             + +  +A +A +F    ++I+LAGDA H  P   G G N+G++DA NLAWK+A V+K 
Sbjct: 269 RKRVYTHNARLAAQFRV--DRILLAGDAAHIMPVWQGQGYNSGMRDASNLAWKLAMVVKG 326

Query: 400 IAPASILNTYETERKPIAEFNTALS 424
            A + +L++YE ER+  A     LS
Sbjct: 327 EARSDLLDSYEQERRDHARSMIHLS 351

Catalyzes the insertion of one atom of molecular oxygen into position 2 of the phenyl ring of 3-(3-hydroxyphenyl)propionate (3-HPP) and hydroxycinnamic acid (3HCI).

Comamonas testosteroni (taxid: 285)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: 7

>sp|P31020|PHEA_PSEUE Phenol 2-monooxygenase OS=Pseudomonas sp. (strain EST1001) GN=pheA PE=3 SV=1

 Score =  114 bits (284), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 113/432 (26%), Positives = 182/432 (42%), Gaps = 60/432 (13%)

Query: 34  SKTIVSNEAVV---PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNR 90
           S T   NE  V    VLIVG+GP G   ++ L+  GI   ++ K +  +  P+AH  N R
Sbjct: 23  SATDTPNETNVVETEVLIVGSGPAGSSAAMFLSTQGISNIMITKYRWTANTPRAHITNQR 82

Query: 91  YALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTG------PILGSVDHMQPQDFEKVV 144
              + R   G+ +++     P +L    +YC S+ G      P  G+    +  D+E + 
Sbjct: 83  TMEILRDA-GIEDQVLAEAVPHELMGDTVYCESMAGEEIGRRPTWGTRPDRR-ADYE-LA 139

Query: 145 SPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD 204
           SP       Q  L  ++LK                   N  ++G +     E +S +  D
Sbjct: 140 SPAMPCDIPQTLLEPIMLK-------------------NATMRGTQTQFSTEYLSHTQDD 180

Query: 205 QCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSK 264
           + ++V    L      E  I+   LIG DGA    R  V  D+ G  ++     +     
Sbjct: 181 KGVSV--QVLNRLTGQEYTIRAKYLIGADGA----RSKVAADIGGSMNITFKADLSHWRP 234

Query: 265 DLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPF----YPPQQNLEDFSPEI 320
              D +L   P  + + +       +V       E+++   F     PP+ N ++     
Sbjct: 235 SALDPVLG-LPPRIEYRWPRRWFDRMVR---PWNEWLVVWGFDINQEPPKLNDDE----- 285

Query: 321 CEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKF----LCCYNQIILAGDACHRFPPAGG 376
             +++  LVG E  D++++    W  + + A       +CC      AGDA H+ PP+ G
Sbjct: 286 AIQIVRNLVGIEDLDVEILGYSLWGNNDQYATHLQKGRVCC------AGDAIHKHPPSHG 339

Query: 377 FGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPS 436
            G NT +QD++NL WK+A VLK  A   +L TY TER PIA+     +  +      +  
Sbjct: 340 LGSNTSIQDSYNLCWKLACVLKGQAGPELLETYSTERAPIAKQIVTRANGSSSEYKPIFD 399

Query: 437 ALGLDPTIANSE 448
           ALG+     N E
Sbjct: 400 ALGVTDATTNDE 411

Pseudomonas sp. (strain EST1001) (taxid: 69012)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 7

>sp|Q476N1|MHPA_CUPPJ 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) GN=mhpA PE=3 SV=1

 Score =  111 bits (278), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 177/385 (45%), Gaps = 55/385 (14%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEI 105
           V I+GAGPVGL+++ +L   G++ +V+EK      +P+A  +++    VF+ + GLA+ +
Sbjct: 21  VAIIGAGPVGLMIANILGLQGVRVTVVEKLDQLIDYPRAIGLDDEALRVFQAI-GLADTL 79

Query: 106 ERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQL 165
                P D W +F+   +  G    S+   +P+  E          F   + N  +    
Sbjct: 80  LPHTTP-DHWMRFV---TKDGHCFASI---EPRTDE----------FGWSRRNAFIQPLA 122

Query: 166 EKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQ 225
           +++ F        EGL     +  ++L GH    V A  Q  + ++  +       R I+
Sbjct: 123 DRVLF--------EGLQR--FEHVQVLFGH---GVEAFTQDGHGVSVEVTTSAGRRRTIR 169

Query: 226 CNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGD-----YLLNERPGMLFF 280
              ++G DG  S VR+ + +   G     + + V   +  +G      +  +ERP     
Sbjct: 170 AAYMVGADGGNSIVRRALQVPFEGRTKPNQWIVVDVRNDPVGSPHIYMHCDHERP----- 224

Query: 281 IFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFS-PEICEKLIFKLVGWELSDIDVI 339
                 +   + H ++  EF++      P +  E+ S PE    LI K+V  +   +D I
Sbjct: 225 -----YVSAALPHGIRRFEFMVM-----PGETEEELSKPENMAALIRKVVA-DPDKVDYI 273

Query: 340 DIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD 399
             + +  +A +A  F    ++++LAGDA H  P   G G N+G++DA+NL WK+A V K 
Sbjct: 274 RKRVYTHNARLASTFRV--DRVLLAGDAAHIMPVWQGQGYNSGIRDANNLGWKLAMVAKG 331

Query: 400 IAPASILNTYETERKPIAEFNTALS 424
           +A   +L+TY  ER+  A     LS
Sbjct: 332 LADGRLLDTYTAERRAHARSMIHLS 356

Catalyzes the insertion of one atom of molecular oxygen into position 2 of the phenyl ring of 3-(3-hydroxyphenyl)propionate (3-HPP) and hydroxycinnamic acid (3HCI).

Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (taxid: 264198)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: 7

>sp|Q13QI0|MHPA_BURXL 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase OS=Burkholderia xenovorans (strain LB400) GN=mhpA PE=3 SV=1

 Score =  108 bits (271), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 101/387 (26%), Positives = 179/387 (46%), Gaps = 59/387 (15%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEI 105
           V I+GAGPVGL+++  L   G++  VLEK +    +P+A  +++    VF+ + GLA+ +
Sbjct: 21  VAIIGAGPVGLMIANYLGLQGVRVVVLEKLEQIIDYPRAIGLDDEALRVFQSV-GLADVL 79

Query: 106 ERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQL 165
                P D W +F+   + TG    S+   +P+  E          F   + N  +    
Sbjct: 80  LPHTTP-DHWMRFV---THTGHCFASI---EPRTDE----------FGWSRRNAFIQPLA 122

Query: 166 EKLNFKICTSEGTEGLHN--HLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERN 223
           +++ +        EGL    H+    ++L G      +     + + A   K G+   R 
Sbjct: 123 DRVLY--------EGLRRFPHV----QVLFGTSVSGFTQDPAGVTIEADDEKGGR---RT 167

Query: 224 IQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGD-----YLLNERPGML 278
           ++ + ++G DG  S VR+L+ +   G     + + V   +  +G      +   +RP   
Sbjct: 168 VRASYMVGADGGNSFVRRLLDVPFEGRTKPNQWIVVDVRNDPIGSPHIYMHCDPQRP--- 224

Query: 279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFS-PEICEKLIFKLVGWELSDID 337
                   +   + H ++  EF++      P +  E+ S PE    LI K+V  +   +D
Sbjct: 225 -------YVSAALPHGIRRFEFMVM-----PGETEEELSKPENMAALIRKVVA-DPQKVD 271

Query: 338 VIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL 397
            I  + +  +A +A  F    ++++LAGDA H  P   G G N+G++DA NL WK+A V+
Sbjct: 272 YIRKRVYTHNARLASTFRV--DRVLLAGDAAHIMPVWQGQGYNSGIRDASNLGWKLAMVV 329

Query: 398 KDIAPASILNTYETERKPIAEFNTALS 424
           K +A  ++L+TY  ER+  A     LS
Sbjct: 330 KQLAGDALLDTYTAERRAHARSMIHLS 356

Catalyzes the insertion of one atom of molecular oxygen into position 2 of the phenyl ring of 3-(3-hydroxyphenyl)propionate (3-HPP) and hydroxycinnamic acid (3HCI).

Burkholderia xenovorans (strain LB400) (taxid: 266265)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: 7

>sp|A0KE38|MHPA_BURCH 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase OS=Burkholderia cenocepacia (strain HI2424) GN=mhpA PE=3 SV=1

 Score =  104 bits (260), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 179/402 (44%), Gaps = 51/402 (12%)

Query: 39  SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKL 98
           +N     V IVGAGP G  ++ LL   G+   V+E+       P+A  I++  AL   + 
Sbjct: 4   NNRNRTSVAIVGAGPNGAAMANLLGLYGVDTIVVERAPQIVEFPRAVGIDDE-ALRLFQT 62

Query: 99  DGLAEEIERS---QPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQY 155
            GLA+E+ R      P+ +++    C +   P                    S+  F  +
Sbjct: 63  AGLADELSRDIIQNVPLRMFKANGECFADIRP--------------------SIREFGWW 102

Query: 156 KLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLK 215
           + N + ++ L +   +   +      + H+     +  G E V +   D+C+ +    ++
Sbjct: 103 RRN-IFMQHLAERTLRDALAR-----YPHV----SLRTGEEVVGLEQDDECVTLQ---VR 149

Query: 216 EGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP 275
                +  +  + ++  DG  S VR+++GI L G     K V V     D+ +  L++  
Sbjct: 150 AADGQQYELDADYVVAADGGRSPVREMLGIRLAGTTHPMKWVVV-----DVKNARLDQPC 204

Query: 276 GMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSD 335
             L        + + +  + +  EF++    +P +       PE    LI   V  ++  
Sbjct: 205 TALNCDPRRPNVCIYLPFNYRRWEFLV----FPHEDEEAIAQPESIRALIAPYVD-DVDR 259

Query: 336 IDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIAS 395
           I+++  + +  H+ VAE+F+    ++ L GDA H  PP  G G+N G++D  NLAWK+A 
Sbjct: 260 IEIVRARTYTHHSRVAERFVA--GRVALIGDAAHLSPPWIGQGLNAGLRDVGNLAWKLAG 317

Query: 396 VLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSA 437
           V+       +++TYE+ER+  A+    + + +   AM +P++
Sbjct: 318 VVNGTLHRRVISTYESERRDHAK--AMIDLADTFGAMLMPTS 357

Catalyzes the insertion of one atom of molecular oxygen into position 2 of the phenyl ring of 3-(3-hydroxyphenyl)propionate (3-HPP) and hydroxycinnamic acid (3HCI).

Burkholderia cenocepacia (strain HI2424) (taxid: 331272)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	455
225425869	708	PREDICTED: 2,4-dichlorophenol 6-monooxyg	0.927	0.596	0.762	0.0
224100055	707	predicted protein [Populus trichocarpa]	0.967	0.622	0.759	0.0
449449080	709	PREDICTED: putative polyketide hydroxyla	0.931	0.598	0.721	0.0
356538099	714	PREDICTED: putative polyketide hydroxyla	0.958	0.610	0.697	0.0
79351534	709	FAD/NAD(P)-binding oxidoreductase family	0.949	0.609	0.694	0.0
297808795	709	predicted protein [Arabidopsis lyrata su	0.975	0.626	0.675	1e-180
255547866	685	conserved hypothetical protein [Ricinus	0.914	0.607	0.713	1e-178
297851148	709	EMB2421 [Arabidopsis lyrata subsp. lyrat	0.949	0.609	0.680	1e-177
357463063	983	CCP [Medicago truncatula] gi|355490861|g	0.945	0.437	0.627	1e-175
357126361	712	PREDICTED: putative polyketide hydroxyla	0.887	0.567	0.654	1e-159

>gi|225425869|ref|XP_002266262.1| PREDICTED: 2,4-dichlorophenol 6-monooxygenase [Vitis vinifera] gi|297738359|emb|CBI27560.3| unnamed protein product [Vitis vinifera]

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/426 (76%), Positives = 374/426 (87%), Gaps = 4/426 (0%)

Query: 22  PYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH 81
           PY YTQ R  S+    VS   V PVLIVGAGPVGL LSILLTKLG+KC+VLEK+K FS H
Sbjct: 14  PYQYTQKRGFSE----VSRNGVFPVLIVGAGPVGLALSILLTKLGVKCAVLEKSKTFSKH 69

Query: 82  PQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFE 141
           PQAHFINNR   VFRKLDGLA+EI++SQPPVDLWRKFIYCTS+ G +LGSVDHMQP+DF+
Sbjct: 70  PQAHFINNRSMEVFRKLDGLADEIQKSQPPVDLWRKFIYCTSLYGSVLGSVDHMQPEDFK 129

Query: 142 KVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS 201
           +VVSP+SVAHFSQYKL  LLLKQLE L+F++   EG EGL++  ++ ++ILMGHECVS+ 
Sbjct: 130 QVVSPISVAHFSQYKLTALLLKQLENLSFRVHNWEGWEGLNHGHVREKQILMGHECVSMD 189

Query: 202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHF 261
           ATD  INV ASFLKEGKC +RNIQC+IL+G DGAGSTVRKL GI + GE+DLQKLVS+HF
Sbjct: 190 ATDDWINVTASFLKEGKCMKRNIQCSILVGADGAGSTVRKLAGITMKGEEDLQKLVSIHF 249

Query: 262 LSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEIC 321
           LSK+LG YLLNERPGMLFFIFNTEAIGVLVAHDLK+GEF+LQ PFYPPQQ+L DFSPE+C
Sbjct: 250 LSKELGQYLLNERPGMLFFIFNTEAIGVLVAHDLKQGEFVLQTPFYPPQQSLHDFSPEVC 309

Query: 322 EKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNT 381
           EKLIFKLVG EL DIDVIDIKPWVMHAEVAEKF+ C N+I+LAGDA HRFPPAGGFGMNT
Sbjct: 310 EKLIFKLVGQELVDIDVIDIKPWVMHAEVAEKFVSCDNRILLAGDAAHRFPPAGGFGMNT 369

Query: 382 GVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLD 441
           G+QDAHNLAWK+AS++K IAP+SIL+TY+TER+PIA FNT LS+QNFRAAM VP+ LGL+
Sbjct: 370 GIQDAHNLAWKLASLVKGIAPSSILHTYDTERRPIAIFNTELSIQNFRAAMAVPATLGLN 429

Query: 442 PTIANS 447
           PT+ANS
Sbjct: 430 PTVANS 435

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100055|ref|XP_002311726.1| predicted protein [Populus trichocarpa] gi|222851546|gb|EEE89093.1| predicted protein [Populus trichocarpa]

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/449 (75%), Positives = 384/449 (85%), Gaps = 9/449 (2%)

Query: 3   IAAFTRGLNCFSRIKTFP----YPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVL 58
           I  F+       RI+  P    Y Y + QCR  S  K    +++V+PVLIVGAGPVGLVL
Sbjct: 7   IKGFSSVYRAKPRIRVHPSFCQYGYCHIQCRTFSHFKD--HDDSVLPVLIVGAGPVGLVL 64

Query: 59  SILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKF 118
           SILLTKLG+KCSVLEK+K+FS HPQAHFINNR   VFRKLDGLAEEI+RSQPPVDLWRKF
Sbjct: 65  SILLTKLGVKCSVLEKSKSFSHHPQAHFINNRSMEVFRKLDGLAEEIQRSQPPVDLWRKF 124

Query: 119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGT 178
           +YCTS+TGP+LGSVDHMQPQDFEKVVSPVSVAHFSQYKL +LLLK+LE LNF IC  EG 
Sbjct: 125 VYCTSLTGPVLGSVDHMQPQDFEKVVSPVSVAHFSQYKLIRLLLKKLEDLNFHICKPEG- 183

Query: 179 EGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238
             L++   +G E+LMGHECV ++AT Q +NV AS LKEGK TERNI CNIL+GTDGAGST
Sbjct: 184 --LNDEPFRGGELLMGHECVKINATGQSVNVTASHLKEGKYTERNISCNILVGTDGAGST 241

Query: 239 VRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEG 298
            RKL GI+L GEKDLQKLVSVHFLS+DLG YLLNERPGMLFFIFNTEAIGVLVAHDL +G
Sbjct: 242 TRKLAGIELRGEKDLQKLVSVHFLSRDLGQYLLNERPGMLFFIFNTEAIGVLVAHDLMQG 301

Query: 299 EFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY 358
           EF+LQ+PFYPPQQ+L+DFSPE C+ LI KLVG ELSDIDVIDIKPWVMHAEVAEKF+ C 
Sbjct: 302 EFVLQMPFYPPQQSLDDFSPETCKHLILKLVGQELSDIDVIDIKPWVMHAEVAEKFVSCD 361

Query: 359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE 418
           N+IILAGDA HRFPPAGGFGMNTG+QDAHNLAWKIA+++K IAP+SIL+TYETER+PIA 
Sbjct: 362 NRIILAGDAAHRFPPAGGFGMNTGIQDAHNLAWKIAALVKGIAPSSILHTYETERRPIAI 421

Query: 419 FNTALSVQNFRAAMEVPSALGLDPTIANS 447
           FNTALSVQNFRAAM VP+ LGLDPT+ANS
Sbjct: 422 FNTALSVQNFRAAMAVPATLGLDPTVANS 450

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449080|ref|XP_004142293.1| PREDICTED: putative polyketide hydroxylase-like [Cucumis sativus] gi|449513114|ref|XP_004164234.1| PREDICTED: putative polyketide hydroxylase-like [Cucumis sativus]

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/428 (72%), Positives = 368/428 (85%), Gaps = 4/428 (0%)

Query: 22  PYGYTQCRALSDSKTIVS-NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST 80
           P    QCR  S+SK     +E +VPVLIVGAGPVGLVL+ILLTKLG+KC+++EKNK+FS 
Sbjct: 32  PLRNIQCRGSSNSKIFHGGDETMVPVLIVGAGPVGLVLAILLTKLGVKCAIVEKNKSFSK 91

Query: 81  HPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDF 140
           HPQAHFINNR   VFRKLDGLAE+I+  QPPV+ WRKFIYCTS+ G ILGSVDHMQPQDF
Sbjct: 92  HPQAHFINNRTMEVFRKLDGLAEKIQLYQPPVESWRKFIYCTSLNGTILGSVDHMQPQDF 151

Query: 141 EKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200
           E ++SPVSVAHFSQYKLN LLLKQL+ L F++C+ +  EG    +++ ++IL+GHECVS+
Sbjct: 152 EHIISPVSVAHFSQYKLNGLLLKQLQNLGFQVCSPDSLEG--PCVVREKKILLGHECVSI 209

Query: 201 SATDQCINVIASFLKEGKCTER-NIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSV 259
            ATD+ +N+ AS+LKEGK  ER NI CNIL+G DGAGSTVR+LVGI++ GE DLQKLVS+
Sbjct: 210 DATDESVNMTASYLKEGKHVERRNISCNILVGADGAGSTVRRLVGIEMKGENDLQKLVSI 269

Query: 260 HFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPE 319
           HF S++LG+YLL +RPGML+FIFNTEAIGVLVAHDLK+GEFILQVPFYPPQQN+EDF P+
Sbjct: 270 HFFSRELGEYLLKDRPGMLYFIFNTEAIGVLVAHDLKQGEFILQVPFYPPQQNIEDFFPQ 329

Query: 320 ICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGM 379
           +CE+LIFKLVG  L DIDV D+KPW+MHAEVAEKF+C  N ++LAGDA HRFPPAGGFGM
Sbjct: 330 MCEELIFKLVGRNLCDIDVRDVKPWIMHAEVAEKFICRQNHVLLAGDAAHRFPPAGGFGM 389

Query: 380 NTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALG 439
           NTG+QD HNLAWK+A+VL+DIA  SILNTYE ER+PIA FNTALSV+NF+AAMEVP+ALG
Sbjct: 390 NTGIQDVHNLAWKLAAVLQDIASPSILNTYEMERRPIALFNTALSVKNFKAAMEVPAALG 449

Query: 440 LDPTIANS 447
           LDP IANS
Sbjct: 450 LDPKIANS 457

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538099|ref|XP_003537542.1| PREDICTED: putative polyketide hydroxylase-like [Glycine max]

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/447 (69%), Positives = 361/447 (80%), Gaps = 11/447 (2%)

Query: 9   GLNCFSRIKTFP---------YPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLS 59
           G   F R  +FP         Y   + Q R  S    +  N+ V PVLI+GAGPVGLVLS
Sbjct: 2   GFLRFIRRYSFPFKDKTRNRAYALQHMQSRGFSKDGVLNGNDVVHPVLIIGAGPVGLVLS 61

Query: 60  ILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119
           ILLTKLGI C+VLE+NKAFS HPQAHFINNR   +FRK+DGL EEI+RSQPPVDLWRKFI
Sbjct: 62  ILLTKLGINCTVLERNKAFSKHPQAHFINNRSMEIFRKIDGLVEEIQRSQPPVDLWRKFI 121

Query: 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTE 179
           YCTS++G ILGSVDH+QPQD E  VSPVSVAHFSQYKL  LLLK+LE L F+IC  E  E
Sbjct: 122 YCTSLSGSILGSVDHIQPQDLEHFVSPVSVAHFSQYKLTMLLLKRLENLGFQICAPESLE 181

Query: 180 GLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239
           G  N     ++I+MGHECVS+ A++  + V AS + +GK  E+NI CNILIGTDGAGSTV
Sbjct: 182 G--NEQSCEKKIMMGHECVSIDASNDFVTVTASSIIKGKRVEQNIHCNILIGTDGAGSTV 239

Query: 240 RKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGE 299
           RKLVGI++ GEKDLQKLVSVHF SKDLG +LL E PGMLFFIFN EAIGVLVAHDL++GE
Sbjct: 240 RKLVGIEMRGEKDLQKLVSVHFFSKDLGQFLLKENPGMLFFIFNAEAIGVLVAHDLRQGE 299

Query: 300 FILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYN 359
           F+LQ+PFYPPQQ +EDF+P+ CEKLI KLVG E  D+DVIDIKPWVMHAEVAE+F+C  N
Sbjct: 300 FVLQIPFYPPQQTIEDFNPKACEKLISKLVGREFGDVDVIDIKPWVMHAEVAERFICSGN 359

Query: 360 QIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEF 419
           +I+LAGDA HRFPPAGGFGMNTG+QDAHNLAWKIASV+K IAP S+LNTYE ERKPIA F
Sbjct: 360 RILLAGDAAHRFPPAGGFGMNTGIQDAHNLAWKIASVIKGIAPTSMLNTYEIERKPIALF 419

Query: 420 NTALSVQNFRAAMEVPSALGLDPTIAN 446
           NT LS++N++AAM VP+ALGLDPT+AN
Sbjct: 420 NTRLSLENYKAAMSVPAALGLDPTVAN 446

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79351534|ref|NP_173844.2| FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana] gi|26450238|dbj|BAC42236.1| unknown protein [Arabidopsis thaliana] gi|332192397|gb|AEE30518.1| FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana]

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/435 (69%), Positives = 360/435 (82%), Gaps = 3/435 (0%)

Query: 14  SRIKTFPYPYGYTQCRALSDSKTIVSNEAV-VPVLIVGAGPVGLVLSILLTKLGIKCSVL 72
           SR++   YP  Y Q + LS +      +A  +PVLIVGAGPVGLVLSILLTKLG+KC+V+
Sbjct: 18  SRVRV--YPVRYFQRKDLSSTNLFNGEDAAKLPVLIVGAGPVGLVLSILLTKLGVKCAVV 75

Query: 73  EKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSV 132
           +K  +FS HPQAHFINNR   +FR+LDGLAEEIERSQPPVDLWRKFIYCTS++G  LG+V
Sbjct: 76  DKATSFSKHPQAHFINNRSMEIFRELDGLAEEIERSQPPVDLWRKFIYCTSLSGSTLGTV 135

Query: 133 DHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREIL 192
           DHMQPQDFEKVVSP SVAHFSQYKL  LLLK+LE L F +  S+ ++GL    +  R+IL
Sbjct: 136 DHMQPQDFEKVVSPASVAHFSQYKLTNLLLKRLEDLGFHVRGSKESDGLEADSVVARQIL 195

Query: 193 MGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKD 252
           MGHECV + A    I    SFLK GK  +RNIQC++L+G DGAGS VRKL  I++ GE+D
Sbjct: 196 MGHECVGIDANKDSITATVSFLKGGKHMKRNIQCSLLVGADGAGSAVRKLTVIEMRGERD 255

Query: 253 LQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQN 312
           LQKLVSVHF+S++LG+YL++ RPGMLFFIFNT+ IGVLVAHDL +GEF+LQ+P+YPPQQ+
Sbjct: 256 LQKLVSVHFMSRELGEYLISNRPGMLFFIFNTDGIGVLVAHDLLQGEFVLQIPYYPPQQS 315

Query: 313 LEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFP 372
           L DFSPE+C+ LIF LVG ELSD+DV DIKPWVMHAEVAEKF+CC N++ILAGDA HRFP
Sbjct: 316 LSDFSPEMCKMLIFNLVGHELSDLDVADIKPWVMHAEVAEKFMCCENRVILAGDAAHRFP 375

Query: 373 PAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAM 432
           PAGGFGMNTG+QDAHNLAWKIA++++  A +SIL TYETER+PIA  NT+LSVQNFRAAM
Sbjct: 376 PAGGFGMNTGIQDAHNLAWKIAALVQGSANSSILKTYETERRPIALSNTSLSVQNFRAAM 435

Query: 433 EVPSALGLDPTIANS 447
            VPSALGLDPT+ANS
Sbjct: 436 SVPSALGLDPTVANS 450

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808795|ref|XP_002872281.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297318118|gb|EFH48540.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 302/447 (67%), Positives = 362/447 (80%), Gaps = 3/447 (0%)

Query: 2   RIAAFTRGLNCFSRIKTFPYPYGYTQCRALSDSKTIVSNEAV-VPVLIVGAGPVGLVLSI 60
           RI   TR     SR++  P  Y   Q + LS++ +    +A  +PVLIVGAGPVGLVLSI
Sbjct: 6   RITGVTRISRNNSRVRVCPVRY--FQSKDLSNTNSFNGEDAAKLPVLIVGAGPVGLVLSI 63

Query: 61  LLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120
           LLTKLG+KC+V++K  +FS HPQAHFINNR   +FR LDGLAEEIERSQPPVDLWRKFIY
Sbjct: 64  LLTKLGVKCAVVDKATSFSKHPQAHFINNRSMEIFRALDGLAEEIERSQPPVDLWRKFIY 123

Query: 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEG 180
           CTS++G  LG+VDHMQPQDFEKVVSP SVAHFSQYKL  LLLK+L  L F +  S+ ++G
Sbjct: 124 CTSLSGSTLGTVDHMQPQDFEKVVSPASVAHFSQYKLTNLLLKRLGDLGFHVRGSKESDG 183

Query: 181 LHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVR 240
           L    +  R+ILMGHECV++ A    I    S+LK GK  +RNIQC+IL+G DGAGS VR
Sbjct: 184 LEVDAVVARQILMGHECVAIDANKDSITATVSYLKGGKHMKRNIQCSILVGADGAGSAVR 243

Query: 241 KLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEF 300
           KL  I++ GE+DLQKLVSVHF+S++LG+YL++ RPGMLFFIFNT+ IGVLVAHDL +GEF
Sbjct: 244 KLTAIEMRGERDLQKLVSVHFMSRELGEYLISRRPGMLFFIFNTDGIGVLVAHDLLQGEF 303

Query: 301 ILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQ 360
           +LQ+P+YPPQQ+L DFSPE+C  LI+ LVG ELSD+DV DIKPWVMHAEVAEKF+CC N+
Sbjct: 304 VLQIPYYPPQQSLSDFSPEMCRMLIYNLVGHELSDLDVADIKPWVMHAEVAEKFMCCENR 363

Query: 361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFN 420
           +ILAGDA HRFPPAGGFGMNTG+QDAHNL WKIA++++  A +SIL TYETER+PIA  N
Sbjct: 364 VILAGDAAHRFPPAGGFGMNTGIQDAHNLTWKIAALVQGSAKSSILKTYETERRPIALSN 423

Query: 421 TALSVQNFRAAMEVPSALGLDPTIANS 447
           T+LSVQNFRAAM VPSALGLDPT+ANS
Sbjct: 424 TSLSVQNFRAAMSVPSALGLDPTVANS 450

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547866|ref|XP_002514990.1| conserved hypothetical protein [Ricinus communis] gi|223546041|gb|EEF47544.1| conserved hypothetical protein [Ricinus communis]

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 309/433 (71%), Positives = 363/433 (83%), Gaps = 17/433 (3%)

Query: 15  RIKTFPYPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEK 74
           R K   Y Y Y+Q R LS S+++ S+++++PVLIVGAGPVGL LSILLTKLG+KCS+LEK
Sbjct: 11  RNKLCSYGY-YSQSRGLSHSQSLNSDDSILPVLIVGAGPVGLTLSILLTKLGVKCSILEK 69

Query: 75  NKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDH 134
           +KAFS HPQAHFINNR   +F KL+GLAEEI+RSQPPV+LWRKFIYCTS+TGPILGSVDH
Sbjct: 70  SKAFSNHPQAHFINNRSMEIFHKLEGLAEEIQRSQPPVELWRKFIYCTSLTGPILGSVDH 129

Query: 135 MQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG 194
           MQPQDFEKVVSPVSVAHFSQYKL++LLL++LE LNF IC  E   GL +  L+GREILMG
Sbjct: 130 MQPQDFEKVVSPVSVAHFSQYKLSRLLLRKLEDLNFHICRPESVRGLGDGPLKGREILMG 189

Query: 195 HECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQ 254
           HEC+S++ATD  + V AS + EGK  E++I C+IL+GTDGAGST+RKL GI+L GEKDLQ
Sbjct: 190 HECISMNATDYSVTVTASHIVEGKYMEKDISCSILVGTDGAGSTIRKLAGIELRGEKDLQ 249

Query: 255 KLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLE 314
           KL+S+HF S+DLG YLL ERPGMLFFIFNTEAIGVLVAHDLK+GEFILQ           
Sbjct: 250 KLISIHFFSRDLGHYLLAERPGMLFFIFNTEAIGVLVAHDLKQGEFILQ----------- 298

Query: 315 DFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPA 374
                IC KLI KLVG ELSDIDV ++KPWVMHAEVAEKF+ C +++ILAGDA HRFPPA
Sbjct: 299 -----ICRKLILKLVGQELSDIDVTEVKPWVMHAEVAEKFVSCNSRVILAGDAAHRFPPA 353

Query: 375 GGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEV 434
           GGFGMNTG+QD HNLAWK+AS +  IAP+SI++TYE ER+PIA FNTALSVQNFRAAM V
Sbjct: 354 GGFGMNTGIQDVHNLAWKLASFMMGIAPSSIIHTYEMERRPIALFNTALSVQNFRAAMAV 413

Query: 435 PSALGLDPTIANS 447
           P+ALGLDP++ANS
Sbjct: 414 PAALGLDPSVANS 426

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851148|ref|XP_002893455.1| EMB2421 [Arabidopsis lyrata subsp. lyrata] gi|297339297|gb|EFH69714.1| EMB2421 [Arabidopsis lyrata subsp. lyrata]

 Score =  629 bits (1621), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 296/435 (68%), Positives = 359/435 (82%), Gaps = 3/435 (0%)

Query: 14  SRIKTFPYPYGYTQCRALSDSKTIVSNEAV-VPVLIVGAGPVGLVLSILLTKLGIKCSVL 72
           SR++   YP  + Q + LS + +    +A  +PVLIVGAGPVGLVLSILLTKLG+KC+V+
Sbjct: 18  SRVRV--YPVRHFQSKDLSSTNSFNGQDAAKLPVLIVGAGPVGLVLSILLTKLGVKCAVV 75

Query: 73  EKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSV 132
           +K  +FS HPQAHFINNR   +FR LDGLAEEIERSQPPVDLWR FIYCTS++G  LG+V
Sbjct: 76  DKATSFSKHPQAHFINNRSMEIFRALDGLAEEIERSQPPVDLWRNFIYCTSLSGSTLGTV 135

Query: 133 DHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREIL 192
           DHMQPQDFEKVVSP SVAHFSQYKL  LLLK+LE L F +  S+ ++G+    +  R+IL
Sbjct: 136 DHMQPQDFEKVVSPASVAHFSQYKLTNLLLKRLEDLGFHVRGSKDSDGIELDSVVARQIL 195

Query: 193 MGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKD 252
           MGHECV++ A    I    S+LK GK  +RNIQC++L+G DGAGS VRKL  I++ GEKD
Sbjct: 196 MGHECVAIDANKDSITATVSYLKGGKHMKRNIQCSLLVGADGAGSAVRKLTEIEMRGEKD 255

Query: 253 LQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQN 312
           LQKLVSVHF+S++LG+YL++ RPGMLFFIFNT+ IGVLVAHDL +GEF+LQ+P+YPPQQ+
Sbjct: 256 LQKLVSVHFMSRELGEYLISSRPGMLFFIFNTDGIGVLVAHDLLQGEFVLQIPYYPPQQS 315

Query: 313 LEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFP 372
           L DFS E+C+ LIF LVG +LSD+DV DIKPWVMHAEVAEKF+C  N++ILAGDA HRFP
Sbjct: 316 LSDFSLEMCKMLIFNLVGHQLSDLDVADIKPWVMHAEVAEKFMCFENRVILAGDAAHRFP 375

Query: 373 PAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAM 432
           PAGGFGMNTG+QDAHNLAWKIA++++  A +SILNTYETER+PIA  NT+LSVQNF+AAM
Sbjct: 376 PAGGFGMNTGIQDAHNLAWKIAALVQGSAKSSILNTYETERRPIALSNTSLSVQNFKAAM 435

Query: 433 EVPSALGLDPTIANS 447
            VPSALGLDPT+ANS
Sbjct: 436 SVPSALGLDPTVANS 450

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463063|ref|XP_003601813.1| CCP [Medicago truncatula] gi|355490861|gb|AES72064.1| CCP [Medicago truncatula]

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 307/489 (62%), Positives = 361/489 (73%), Gaps = 59/489 (12%)

Query: 16  IKTFPYPYG-----------YTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTK 64
           I+ + YP+            + Q R  S +K I  N+AV+PVLI+GAGPVGLVLSILLTK
Sbjct: 242 IRRYNYPFKDKTRNRALLIQHMQSRGFSKAKVINGNDAVLPVLIIGAGPVGLVLSILLTK 301

Query: 65  LGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSV 124
           LGI C+VLE+NKAFS HPQAHFINNR   +FRK+DGL EEI+RSQPPVDLWRKF+YCTS+
Sbjct: 302 LGINCTVLERNKAFSKHPQAHFINNRSMEIFRKIDGLVEEIQRSQPPVDLWRKFVYCTSL 361

Query: 125 TGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNH 184
           +G ILGSVDH+QPQD E VVSP+SVAHFSQYKL  LLLKQLE L F+ C SE +EG  N 
Sbjct: 362 SGSILGSVDHIQPQDLEHVVSPISVAHFSQYKLTMLLLKQLENLGFQTCASESSEG--NK 419

Query: 185 LLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVG 244
                 ILMGHECVS+   +  + V AS +  GK  E++I C+ILIG DGAGSTVRKLVG
Sbjct: 420 QPCENIILMGHECVSIDTNNDLVTVTASSVNNGKRVEKDIHCSILIGADGAGSTVRKLVG 479

Query: 245 IDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQV 304
           ID+ GEKDLQKLVSVHFLSK LG +LL E PGMLFFIFN+EAIGVLVAHDL++GEF+LQ+
Sbjct: 480 IDMRGEKDLQKLVSVHFLSKRLGKFLLKENPGMLFFIFNSEAIGVLVAHDLRQGEFVLQI 539

Query: 305 PFYPPQQNLEDFSP------------------EICEKLIFKLVGWELSDIDVIDIKPWVM 346
           PFYPPQQ +EDFSP                  + CEKLI KLVG E  D+DVIDIKPW+M
Sbjct: 540 PFYPPQQTIEDFSPKACEKLISKFVGQEFGDVDACEKLISKLVGQEFGDVDVIDIKPWIM 599

Query: 347 HAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASIL 406
           HAEVAE+F+CC N+I+LAGDA HRFPPAGGFGMNTG+QDAHNL WKIASV+K IAP S+L
Sbjct: 600 HAEVAERFICCGNRILLAGDAAHRFPPAGGFGMNTGIQDAHNLVWKIASVIKGIAPNSML 659

Query: 407 NTYETERKP----------------------------IAEFNTALSVQNFRAAMEVPSAL 438
           NTY+ ER+P                            I+ FNT LS++N+RAAM VP+ L
Sbjct: 660 NTYDMERRPVMLLSSIALFKFIFIFKYDKPIDVYCCQISVFNTRLSLENYRAAMSVPATL 719

Query: 439 GLDPTIANS 447
           GLDPT+AN+
Sbjct: 720 GLDPTVANT 728

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357126361|ref|XP_003564856.1| PREDICTED: putative polyketide hydroxylase-like [Brachypodium distachyon]

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 265/405 (65%), Positives = 325/405 (80%), Gaps = 1/405 (0%)

Query: 44  VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAE 103
           +PV+IVGAGPVGLVLS LLTK GIKC+V+EK+  F+ HP+AHFINNR   +FRK DGLA 
Sbjct: 43  LPVVIVGAGPVGLVLSFLLTKFGIKCTVIEKSMEFTRHPRAHFINNRTMEIFRKFDGLAG 102

Query: 104 EIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLK 163
           +IE++QPPVDLWRKF+YCTS++G +LGSVDHM+ +DF+KV+SP+SVAHFSQYKL  LLL 
Sbjct: 103 DIEKAQPPVDLWRKFVYCTSLSGSVLGSVDHMKQEDFDKVISPISVAHFSQYKLVDLLLN 162

Query: 164 QLEKLNFKICTSEGTEG-LHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTER 222
           +LE + F  C  +   G L   L+   +ILMGHEC S+  TD+ I + ASF   G   ER
Sbjct: 163 KLEGIGFHTCFPDDIGGRLTRDLVLENKILMGHECSSIQLTDEGILLGASFNNGGTMQER 222

Query: 223 NIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF 282
            + C +L+  DGA STVR+L GI + G +DLQKLVSVHFLS++LG YL +ERPGMLFFIF
Sbjct: 223 KLHCGLLLAADGAKSTVRELAGISMEGARDLQKLVSVHFLSRNLGKYLSSERPGMLFFIF 282

Query: 283 NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIK 342
           N +AIGVLVAHDL+ GEF+LQ+PFYPPQQ  +DFS ++CE++I KLVGWE +D+ V+DIK
Sbjct: 283 NPDAIGVLVAHDLEHGEFVLQIPFYPPQQMFDDFSIKVCEQIIVKLVGWEPADVQVLDIK 342

Query: 343 PWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAP 402
           PWVMHAEVAEK+  C N++IL GDA HRFPPAGGFGMNTGVQDAHNLAWK+  +L  +A 
Sbjct: 343 PWVMHAEVAEKYTGCNNRVILVGDAAHRFPPAGGFGMNTGVQDAHNLAWKLGLLLNGVAG 402

Query: 403 ASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANS 447
            SIL TYE+ERKP+A  NT LSVQNF+AAM VP+ LGLDPT+ANS
Sbjct: 403 PSILQTYESERKPVAISNTKLSVQNFKAAMSVPATLGLDPTVANS 447

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	455
TAIR|locus:2032482	709	EMB2421 "AT1G24340" [Arabidops	0.949	0.609	0.671	2.6e-157
TIGR_CMR|BA_3564	539	BA_3564 "FAD-binding monooxyge	0.861	0.727	0.288	4.9e-37
ASPGD|ASPL0000047100	579	AN9029 [Emericella nidulans (t	0.523	0.411	0.308	4.2e-28
UNIPROTKB|P27138	598	tfdB "2,4-dichlorophenol 6-mon	0.472	0.359	0.306	1.9e-27
ASPGD|ASPL0000033058	624	apdD [Emericella nidulans (tax	0.553	0.403	0.290	6.6e-26
ASPGD|ASPL0000070587	619	AN5044 [Emericella nidulans (t	0.472	0.347	0.328	6.7e-22
ASPGD|ASPL0000073547	566	AN10582 [Emericella nidulans (	0.243	0.196	0.385	7.3e-19
ASPGD|ASPL0000055630	590	AN10084 [Emericella nidulans (	0.127	0.098	0.517	4.7e-17
DICTYBASE|DDB_G0287695	678	DDB_G0287695 "FAD-binding mono	0.402	0.269	0.280	7.9e-17
UNIPROTKB|G4NAW2	614	MGG_03126 "2,4-dichlorophenol	0.540	0.400	0.279	1.2e-16

TAIR|locus:2032482 EMB2421 "AT1G24340" [Arabidopsis thaliana (taxid:3702)]

 Score = 1533 (544.7 bits), Expect = 2.6e-157, P = 2.6e-157
 Identities = 292/435 (67%), Positives = 349/435 (80%)

Query:    14 SRIKTFPYPYGYTQCRALSDSKTIVSNEAV-VPVLIVGAGPVGLVLSILLTKLGIKCSVL 72
             SR++   YP  Y Q + LS +      +A  +PVLIVGAGPVGLVLSILLTKLG+KC+V+
Sbjct:    18 SRVRV--YPVRYFQRKDLSSTNLFNGEDAAKLPVLIVGAGPVGLVLSILLTKLGVKCAVV 75

Query:    73 EKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSV 132
             +K  +FS HPQAHFINNR   +FR+LDGLAEEIERSQPPVDLWRKFIYCTS++G  LG+V
Sbjct:    76 DKATSFSKHPQAHFINNRSMEIFRELDGLAEEIERSQPPVDLWRKFIYCTSLSGSTLGTV 135

Query:   133 DHMQPQDFEKVVSPVSVAHFSQYXXXXXXXXXXXXXXXXICTSEGTEGLHNHLLQGREIL 192
             DHMQPQDFEKVVSP SVAHFSQY                +  S+ ++GL    +  R+IL
Sbjct:   136 DHMQPQDFEKVVSPASVAHFSQYKLTNLLLKRLEDLGFHVRGSKESDGLEADSVVARQIL 195

Query:   193 MGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKD 252
             MGHECV + A    I    SFLK GK  +RNIQC++L+G DGAGS VRKL  I++ GE+D
Sbjct:   196 MGHECVGIDANKDSITATVSFLKGGKHMKRNIQCSLLVGADGAGSAVRKLTVIEMRGERD 255

Query:   253 LQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQN 312
             LQKLVSVHF+S++LG+YL++ RPGMLFFIFNT+ IGVLVAHDL +GEF+LQ+P+YPPQQ+
Sbjct:   256 LQKLVSVHFMSRELGEYLISNRPGMLFFIFNTDGIGVLVAHDLLQGEFVLQIPYYPPQQS 315

Query:   313 LEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFP 372
             L DFSPE+C+ LIF LVG ELSD+DV DIKPWVMHAEVAEKF+CC N++ILAGDA HRFP
Sbjct:   316 LSDFSPEMCKMLIFNLVGHELSDLDVADIKPWVMHAEVAEKFMCCENRVILAGDAAHRFP 375

Query:   373 PAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAM 432
             PAGGFGMNTG+QDAHNLAWKIA++++  A +SIL TYETER+PIA  NT+LSVQNFRAAM
Sbjct:   376 PAGGFGMNTGIQDAHNLAWKIAALVQGSANSSILKTYETERRPIALSNTSLSVQNFRAAM 435

Query:   433 EVPSALGLDPTIANS 447
              VPSALGLDPT+ANS
Sbjct:   436 SVPSALGLDPTVANS 450

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0016491 "oxidoreductase activity" evidence=IEA

TIGR_CMR|BA_3564 BA_3564 "FAD-binding monooxygenase, PheA/TfdB family" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 119/413 (28%), Positives = 192/413 (46%)

Query:    39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKL 98
             SN+  VPVLIVG G  GL  ++ L K  I+  ++E++ + + HP+A  I  R   +FR+L
Sbjct:     3 SND--VPVLIVGGGLSGLASALFLAKHNIEYLLIERHPSTAIHPKAGGITFRTMELFREL 60

Query:    99 DGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYXXX 158
              GL + I  +   ++  R  I   ++       +  M+   +E   +   +    +    
Sbjct:    61 -GLEQRIRSAGKTLENCRGRIAVHTIAEANQEELAQMRANQYE---NDEKLLQKIEEISP 116

Query:   159 XXXXXXXXXXXXXICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGK 218
                          I   E         + G E+   HE VS    +Q   VIA+      
Sbjct:   117 SKQTACYQITLEEIMLQEAR-------ILGGELSFYHELVSYEQNEQ--GVIATIRNRET 167

Query:   219 CTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML 278
               E  I C+ +I  DGA S +R+ +GI   G   +       +   D+ +++  +  G  
Sbjct:   168 EKESVIHCDYVIAADGAKSKIREQLGISAEGRGTIGGYYMNIYFEADVSEFMQGDAFGFS 227

Query:   279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDID 337
               + + E +G L+  D     +I  V + P + +  EDF+ E C+++I   +G    + +
Sbjct:   228 M-VLHPEVLGALIPVD-NARRWIYHVSYDPLKGERPEDFTIERCKQIIQTAIGSTNVEPE 285

Query:   338 VIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL 397
             ++ + PW      A KF    N+I L GD+ H  PP GGFG NTG+QDAHNLAWK+A+V+
Sbjct:   286 IVSVLPWKAAESTATKFQD--NRIFLVGDSAHIMPPTGGFGSNTGIQDAHNLAWKLAAVI 343

Query:   398 KDIAPASILNTYETERKPIAEFNTALSVQN-FRAAMEVPSALGLDPTIANSEG 449
             K  A   +L TY  ER P+A+  T  ++   FRAA     +L     +A + G
Sbjct:   344 KGKAKPKLLETYHEERYPVAKLTTDYAISLLFRAANREEGSLNKMDGLAVTAG 396

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

ASPGD|ASPL0000047100 AN9029 [Emericella nidulans (taxid:162425)]

 Score = 271 (100.5 bits), Expect = 4.2e-28, Sum P(2) = 4.2e-28
 Identities = 78/253 (30%), Positives = 129/253 (50%)

Query:   196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQK 255
             E VSV+  +  ++ I    +E + T   ++ N L+G DGA S V   +GI + G + +  
Sbjct:   139 EFVSVTQDESGVSTILRD-RESEKTYM-VRSNYLLGCDGARSAVVSALGIPITG-RQINT 195

Query:   256 LVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKE----GEFILQVPFYPPQQ 311
               +VH +  DL  Y+ + RPG L +I N EA       + +      E++  V  +P  +
Sbjct:   196 AFNVH-IQADLTKYIAH-RPGSLNWILNPEAPDWSAVGNFRMVRPWHEWV--VSMHPASK 251

Query:   312 NLEDFSPEICE--KLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACH 369
             N + F+P   +  K + +++G     I V+    W ++ +VA+ +    ++I+  GDA H
Sbjct:   252 NGKRFTPTEADIIKRLHQMIGDTSIPIKVLSTFEWTINDQVADYWQ--RDRILCIGDAVH 309

Query:   370 RFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR 429
             R PP  G G NT + DA N+AWK+A V+K IA  ++L T   ERKP+ +     +     
Sbjct:   310 RHPPINGLGSNTCLSDAFNIAWKLAYVIKGIAKPALLETLSVERKPVGDGIVRRANTGME 369

Query:   430 AAMEVPSALGLDP 442
             A   + S +GL P
Sbjct:   370 AHRNLWSIIGLTP 382

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|P27138 tfdB "2,4-dichlorophenol 6-monooxygenase" [Ralstonia eutropha JMP134 (taxid:264198)]

 Score = 257 (95.5 bits), Expect = 1.9e-27, Sum P(2) = 1.9e-27
 Identities = 69/225 (30%), Positives = 112/225 (49%)

Query:   221 ERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSK-DLGDYLLNERPGMLF 279
             E  ++   LIG DGA S V  +  +DL  E  + K  S++ L + DL  Y+ + RP +L+
Sbjct:   166 EFTVRSKYLIGADGANSRV--VSDLDLPLEGTMGKSGSINLLFEADLDRYVAH-RPSVLY 222

Query:   280 FIFNTEA----IGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSD 335
             ++    +    +G+ V   ++     L +  Y  +Q   + S     +++  L+G +   
Sbjct:   223 WVIQPGSDIGGLGIGVVRMVRPWNKWLAIWGYDVEQGPPEISESFARRIVHNLIGDDSVP 282

Query:   336 IDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIAS 395
             + +  I  W ++   A +      ++  AGDA HR PP  G G NT +QD+ NLAWKIA 
Sbjct:   283 LKIEGISTWTVNDMYATRLQ--QGRVFCAGDAVHRHPPTNGLGSNTSIQDSFNLAWKIAM 340

Query:   396 VLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGL 440
             VL   A  S+L+TY  ER PIA+     + ++      +  ALGL
Sbjct:   341 VLNGTADESLLDTYTIERAPIAKQVVCRANKSLEDFPPIAMALGL 385

GO:0018666 "2,4-dichlorophenol 6-monooxygenase activity" evidence=NAS

GO:0046300 "2,4-dichlorophenoxyacetic acid catabolic process" evidence=NAS

ASPGD|ASPL0000033058 apdD [Emericella nidulans (taxid:162425)]

 Score = 251 (93.4 bits), Expect = 6.6e-26, Sum P(2) = 6.6e-26
 Identities = 79/272 (29%), Positives = 131/272 (48%)

Query:   180 GLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239
             G+ N L+  R    G +       D  + V A     G+  +  +  + +IG DGA S +
Sbjct:   173 GMENPLIDFRA---GWKVKGARELDHGVEVEAIHSDTGEVWK--VSADFVIGCDGAHSAI 227

Query:   240 RKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAI-------GVLVA 292
             RK + I L G       V VHF S+DL      ++ G  + +F   A        G ++A
Sbjct:   228 RKSLEIPLDGGPIHGYAVLVHFKSRDLSRI---QKQGQFWHLFFPNAASDGGSIKGAVIA 284

Query:   293 HDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELS-DIDVIDIKP-WVMHAEV 350
              D +   + +     P   + +  S EI   L+  + G      ID + ++  W     +
Sbjct:   285 QD-EVDTWTVHRFMRPDVDHTQLSSEEIVYDLLGGMGGQPFPIRIDEVLVRSTWTPSVAL 343

Query:   351 AEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIA-PASILNTY 409
             A  +    ++I +AGDACH+  P GG+GMNTG+ D +++ WK+A+V++  A PA++L+ Y
Sbjct:   344 ARSYAGPKHRIFIAGDACHQTVPTGGYGMNTGIADGYDIGWKLAAVIQGWAGPATLLS-Y 402

Query:   410 ETERKPIAEFNTALSVQNFRAAMEVPSALGLD 441
             E ER+P+ E     S  +    M++ + LGLD
Sbjct:   403 EKERRPVGELALQWSKVHMGNLMKMSAELGLD 434

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000070587 AN5044 [Emericella nidulans (taxid:162425)]

 Score = 241 (89.9 bits), Expect = 6.7e-22, Sum P(2) = 6.7e-22
 Identities = 75/228 (32%), Positives = 118/228 (51%)

Query:   221 ERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSK-DLGDYLLNERPGMLF 279
             E  I+   L G DGA S + K +G+ L   K  Q L +++ L K DL  +L+  R G L 
Sbjct:   214 EYQIRTRYLFGADGARSQIVKQLGLPLT-VKPGQGL-AINVLVKADLS-HLVAHRKGNLH 270

Query:   280 FIFNTE----AIG-VLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKL--IFKLVGWE 332
             ++   +    + G + +   +K  +  + + F     +    SP   E L  + +L+G E
Sbjct:   271 WVMQPDRDHPSFGWMAIIRMVKPWDEWMFILFPTRGYDPASVSPSKEEYLHRVRELIGDE 330

Query:   333 LSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWK 392
              +  ++++I  W ++  VAE +    N +   GDA HR PP  G G NT +QDA NLAWK
Sbjct:   331 -TPAEILNISKWYINEIVAETY-SDGNNVFCLGDAVHRHPPLNGLGSNTCIQDAFNLAWK 388

Query:   393 IASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGL 440
             IA V + IA A +L+TY  ER+P+       + Q FR   ++ +ALG+
Sbjct:   389 IAYVHRGIAGAPLLSTYSAERQPVGHGIVTRANQAFRDHHQIWAALGM 436

GO:0005575 "cellular_component" evidence=ND

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=IEA

ASPGD|ASPL0000073547 AN10582 [Emericella nidulans (taxid:162425)]

 Score = 182 (69.1 bits), Expect = 7.3e-19, Sum P(3) = 7.3e-19
 Identities = 47/122 (38%), Positives = 68/122 (55%)

Query:   312 NLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVAEKFLCCYNQIILAGDACHR 370
             + ED +P+I  K  FK+       ID ++    +  H  VA  F     ++ L GDA H 
Sbjct:   300 SFEDIAPQI--KRSFKM------QIDKMNWFSTYRSHHRVAASF--AKGRVFLVGDAAHI 349

Query:   371 FPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRA 430
               P GG GMNTG+ DA NLAWK+++V+K  A  S+L +YETER+  A    + + + F A
Sbjct:   350 HSPVGGQGMNTGIGDAINLAWKLSAVVKKQAGLSLLQSYETERRAFALQLVSTTDKGFNA 409

Query:   431 AM 432
             A+
Sbjct:   410 AI 411

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=IEA

GO:0005751 "mitochondrial respiratory chain complex IV" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

ASPGD|ASPL0000055630 AN10084 [Emericella nidulans (taxid:162425)]

 Score = 168 (64.2 bits), Expect = 4.7e-17, Sum P(3) = 4.7e-17
 Identities = 30/58 (51%), Positives = 39/58 (67%)

Query:   360 QIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIA 417
             +I L GDACH   P  G GMN  +QD +N+ WK+A VLK +AP S+L TY  ER+ +A
Sbjct:   303 RIFLGGDACHTHSPKAGQGMNVSLQDGYNIGWKLAHVLKGLAPPSLLETYVLEREKVA 360

GO:0005575 "cellular_component" evidence=ND

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=IEA

DICTYBASE|DDB_G0287695 DDB_G0287695 "FAD-binding monooxygenase" [Dictyostelium discoideum (taxid:44689)]

 Score = 181 (68.8 bits), Expect = 7.9e-17, Sum P(2) = 7.9e-17
 Identities = 57/203 (28%), Positives = 99/203 (48%)

Query:   223 NIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHF-LSKDLGDYLLNERPGMLFFI 281
             N++  I+IG DG  S +RK +   + G    Q+ + V   + KD         P    FI
Sbjct:   194 NLKSKIIIGADGGNSFIRKSIASKMEGSSSKQRWLVVDAKIDKDHPPL-----PHYFQFI 248

Query:   282 FNTE--AIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVI 339
              N    A+ + +  +    EF++       +++ E   PEI   L+ +  G ++S +++I
Sbjct:   249 CNPSRPALTLPIPPNHYRWEFLIN----ENEKSEEMEKPEILNPLL-QSHGADISKLEII 303

Query:   340 DIKPWVMHAEVAEKFLCCYN--QIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL 397
                 +V    +A+ +   YN    +L GDACH  PP  G G+++G +D  N+AWKI   L
Sbjct:   304 RKACYVFQNRIADNW---YNGDTTLLIGDACHLVPPFLGMGISSGFRDVQNIAWKIELFL 360

Query:   398 KDIAP--ASILNTYETERKPIAE 418
             K +     ++ ++Y+ ER+P  E
Sbjct:   361 KGVISNHQTLFSSYQIERQPNIE 383

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=IEA

UNIPROTKB|G4NAW2 MGG_03126 "2,4-dichlorophenol 6-monooxygenase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 203 (76.5 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
 Identities = 76/272 (27%), Positives = 124/272 (45%)

Query:   186 LQGREILMGHECVSVSATDQCINVIASFLKEGKCTERN--IQCNILIGTDGAGSTVRKLV 243
             L G +I    E  S    D  I V        K T  N  I+   L G DGA S +   +
Sbjct:   148 LNGFQIRWDTEYQSFEERDDGITVTVL----DKVTGLNYAIEAKYLFGADGARSRIVSQL 203

Query:   244 GIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGV-----LVAHDLK-- 296
              + L         ++V  +  DL  +L+  R G L ++   +   +      V   +K  
Sbjct:   204 ELPLTRTPGGGLAINVQ-IKADLS-HLMKYRTGNLHWVMQPDREHIDFCFFAVVRMVKPW 261

Query:   297 -EGEFILQVPFYPPQQNLEDFSP--EICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEK 353
              E  FIL    +P +    D  P  E  +K + +L+G + +  +++ +  W ++  VA+ 
Sbjct:   262 TEWMFIL----FPVKGYTMDPRPTTEQYQKAVRQLIGDD-TPFEIMRVNTWTVNETVADD 316

Query:   354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETER 413
             +     +++  GDA HR PP  G G NT +QDA NLAWK+A V++  A   +L TY  ER
Sbjct:   317 YQ--RGRVMCLGDAVHRHPPFNGLGSNTCIQDAFNLAWKVAYVMQGKAGPELLKTYTPER 374

Query:   414 KPIAEFNTALSVQNFRAAMEVPSALG-LDPTI 444
             +P+ +     +   FR    + +A+G + PT+
Sbjct:   375 QPVGKGIVKRANDGFRDHNHIFNAIGHILPTL 406

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.13.n3	LOW CONFIDENCE prediction!
3rd Layer	1.14.13	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00035087001	SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (708 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00027710001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (411 aa)							•		0.468

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	455
pfam01494	349	pfam01494, FAD_binding_3, FAD binding domain	3e-75
PRK06126	545	PRK06126, PRK06126, hypothetical protein; Provisio	2e-67
PRK06184	502	PRK06184, PRK06184, hypothetical protein; Provisio	2e-37
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	7e-33
PRK06183	500	PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydr	1e-32
PRK08244	493	PRK08244, PRK08244, hypothetical protein; Provisio	7e-30
PRK06834	488	PRK06834, PRK06834, hypothetical protein; Provisio	2e-18
PRK07190	487	PRK07190, PRK07190, hypothetical protein; Provisio	3e-17
PRK08132	547	PRK08132, PRK08132, FAD-dependent oxidoreductase;	8e-17
PRK08294	634	PRK08294, PRK08294, phenol 2-monooxygenase; Provis	1e-15
TIGR01984	382	TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hy	7e-08
PRK08132	547	PRK08132, PRK08132, FAD-dependent oxidoreductase;	3e-07
TIGR01989	437	TIGR01989, COQ6, ubiquinone biosynthesis monooxyge	3e-06
PRK07494	388	PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl h	1e-05
TIGR01988	387	TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hyd	1e-05
PRK06185	407	PRK06185, PRK06185, hypothetical protein; Provisio	4e-05
PRK07364	415	PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl h	5e-05
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	7e-05
PRK07045	388	PRK07045, PRK07045, putative monooxygenase; Review	8e-05
PRK08243	392	PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygen	8e-05
PRK07608	388	PRK07608, PRK07608, ubiquinone biosynthesis hydrox	1e-04
TIGR01988	387	TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hyd	2e-04
PRK09126	392	PRK09126, PRK09126, hypothetical protein; Provisio	3e-04
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	7e-04
PRK04176	257	PRK04176, PRK04176, ribulose-1,5-biphosphate synth	8e-04
PRK08243	392	PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygen	9e-04
TIGR02360	390	TIGR02360, pbenz_hydroxyl, 4-hydroxybenzoate 3-mon	0.001
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	0.002
TIGR04018	316	TIGR04018, Bthiol_YpdA, putative bacillithiol syst	0.003
TIGR04046	400	TIGR04046, MSMEG_0569_nitr, flavin-dependent oxido	0.004
PRK08850	405	PRK08850, PRK08850, 2-octaprenyl-6-methoxyphenol h	0.004

>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain

 Score =  239 bits (611), Expect = 3e-75
 Identities = 112/379 (29%), Positives = 183/379 (48%), Gaps = 41/379 (10%)

Query: 44  VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAE 103
             VLIVG GP GL+L++LL + G++  ++E++   S  P+A  +N R   + R+  GL +
Sbjct: 2   TDVLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAGGLNQRTMELLRQA-GLED 60

Query: 104 EIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLK 163
            I     P +      Y TS               DF    SP  V  + Q +L  +L +
Sbjct: 61  RILAEGAPHEGMGLAFYNTS---------RRRADLDFL--TSPPRVTVYPQTELEPILRE 109

Query: 164 QLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERN 223
             E                     G ++  G E +S+      +  +    ++G   E  
Sbjct: 110 HAEAR-------------------GAQVRFGTEVLSLEQDGDGVTAVVRDRRDG--EEYT 148

Query: 224 IQCNILIGTDGAGSTVRKLVGIDLVG-EKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF 282
           ++   L+G DG  S VRK +GI+  G E      + V F + DL D +  ER  + + I 
Sbjct: 149 VRAKYLVGCDGGRSPVRKQLGIEFEGFEGVPFGSLDVLFDAPDLSDPV--ERAFVHYLIG 206

Query: 283 NTEAIGVLV--AHDLKEGEFILQVPFYPPQQN-LEDFSPEICEKLIFKLVGWELSDIDVI 339
              + G +V          + +QVP+ P  +   E+F+ E  ++ +   VG +L+D++++
Sbjct: 207 APHSRGFMVGPWRSAGRSRYYVQVPWDPEVEERPEEFTDEEAKQRLRSAVGIDLADVEIL 266

Query: 340 DIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD 399
               W + + VA ++     ++ LAGDA H  PP GG G+NTG+QDA NLAWK+A+VL+ 
Sbjct: 267 WKSIWGVRSRVATRYR--KGRVFLAGDAAHIHPPTGGQGLNTGIQDAFNLAWKLAAVLRG 324

Query: 400 IAPASILNTYETERKPIAE 418
            A  ++L+TYE ER+P+A 
Sbjct: 325 TAGEALLDTYEAERRPVAW 343

This domain is involved in FAD binding in a number of enzymes. Length = 349

>gnl|CDD|235704 PRK06126, PRK06126, hypothetical protein; Provisional

 Score =  224 bits (572), Expect = 2e-67
 Identities = 122/411 (29%), Positives = 194/411 (47%), Gaps = 29/411 (7%)

Query: 45  PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEE 104
           PVLIVG GPVGL L++ L + G+   ++E+    + +P+A+  + R    FR+L G+A+E
Sbjct: 9   PVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRL-GIADE 67

Query: 105 IERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQ 164
           +  +  PVD      Y T +TG  L        ++    V     +  S    +++  K 
Sbjct: 68  VRSAGLPVDYPTDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKY 127

Query: 165 LEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNI 224
           LE +  +   ++    L            GH           +      L  G      I
Sbjct: 128 LEPILLEHAAAQPGVTLRY----------GHRLTDFEQDADGVTATVEDLDGG--ESLTI 175

Query: 225 QCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNT 284
           + + L+G DGA S VR+ +GI   G   LQ+ +S++  +  L   L+   P  ++++FN 
Sbjct: 176 RADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAA-LVGHDPAWMYWLFNP 234

Query: 285 EAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPW 344
           +  GVLVA D ++     Q+     +  ++D         + + VG ++ D +V+ + PW
Sbjct: 235 DRRGVLVAIDGRDEWLFHQLRGGEDEFTIDDVDARA---FVRRGVGEDI-DYEVLSVVPW 290

Query: 345 VMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPAS 404
                VA+ +     ++ LAGDA H F P GG+GMNTG+ DA NLAWK+A+VL   A  +
Sbjct: 291 TGRRLVADSYR--RGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGWAGPA 348

Query: 405 ILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSE--GIAGR 453
           +L++YE ER+PIA        +N   A     ALG  P     E  G AG 
Sbjct: 349 LLDSYEAERRPIA-------ARNTDYARRNADALGSFPVPPEIEDDGPAGD 392

Length = 545

>gnl|CDD|235728 PRK06184, PRK06184, hypothetical protein; Provisional

 Score =  142 bits (361), Expect = 2e-37
 Identities = 119/406 (29%), Positives = 176/406 (43%), Gaps = 75/406 (18%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQ----AHFINNRYALVFRKLDGL 101
           VLIVGAGP GL L+I L + G+   ++EK    +  P        I  R   VF  L G+
Sbjct: 6   VLIVGAGPTGLTLAIELARRGVSFRLIEK----APEPFPGSRGKGIQPRTQEVFDDL-GV 60

Query: 102 AEEI---ERSQPPVDLWRKFIYCTSVTGPILGS--VDHMQPQDFEKVVSPVSVAHFSQYK 156
            + +       PP+ ++R         G +  S    H++P   E    P+ V    Q++
Sbjct: 61  LDRVVAAGGLYPPMRIYRD-------DGSVAESDMFAHLEPTPDEPYPLPLMVP---QWR 110

Query: 157 LNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKE 216
             ++L ++L +L                   G  +  G E V          V A     
Sbjct: 111 TERILRERLAEL-------------------GHRVEFGCELVGFEQDAD--GVTARVAGP 149

Query: 217 GKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKD-----LQKLVSVHFLSKDLGDYLL 271
               E  ++   L+G DG  S VRK +GI   GE       L   VS+  L +D      
Sbjct: 150 A--GEETVRARYLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGLDRDAWHQWP 207

Query: 272 NERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGW 331
           +   GM+       A+  L   DL    F +Q P   P     D S +    L+ +  G 
Sbjct: 208 DGDMGMI-------ALCPLPGTDL----FQIQAPL--PPGGEPDLSADGLTALLAERTG- 253

Query: 332 ELSDIDVIDIKPWV----MHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAH 387
             +DI +  +  W     M+A +A+++     ++ LAGDA H  PPAGG G+NT VQDA+
Sbjct: 254 -RTDIRLHSV-TWASAFRMNARLADRYRV--GRVFLAGDAAHVHPPAGGQGLNTSVQDAY 309

Query: 388 NLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAME 433
           NL WK+A+VL   AP ++L+TYE ER+P+A     LS +   A   
Sbjct: 310 NLGWKLAAVLAG-APEALLDTYEEERRPVAAAVLGLSTELLDAIKR 354

Length = 502

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score =  127 bits (322), Expect = 7e-33
 Identities = 83/406 (20%), Positives = 141/406 (34%), Gaps = 88/406 (21%)

Query: 43  VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVF-----RK 97
           ++ V IVGAGP GL L++ L + G+  ++LE+            +     +       R 
Sbjct: 2   MLDVAIVGAGPAGLALALALARAGLDVTLLERAPR-------ELLERGRGIALSPNALRA 54

Query: 98  LD--GLAEEIE-RSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAH--- 151
           L+  GL + +E    PP+                   V  +       ++   +      
Sbjct: 55  LERLGLWDRLEALGVPPLH------------------VMVVDDGGRRLLIFDAAELGRGA 96

Query: 152 ----FSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCI 207
                 +  L   LL+    L                      +  G E  +V      +
Sbjct: 97  LGYVVPRSDLLNALLEAARALP------------------NVTLRFGAEVEAVEQDGDGV 138

Query: 208 NVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSV------HF 261
            V  SF          +  ++L+G DGA S VR+  GI     +D  +   V        
Sbjct: 139 TVTLSF------DGETLDADLLVGADGANSAVRRAAGIAEFSGRDYGQTALVANVEPEEP 192

Query: 262 LSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEIC 321
                G+   +  P  L  + +  +  V              +P  P +  L+  S E  
Sbjct: 193 HEGRAGERFTHAGPFALLPLPDNRSSVVWS------------LPPGPAED-LQGLSDEEF 239

Query: 322 EKLIFKLVGWELSDIDVIDIKP---WVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFG 378
            + + + +G       V  +     + +   VAE++     +++L GDA H   P  G G
Sbjct: 240 LRELQRRLGERDPLGRVTLVSSRSAFPLSLRVAERY--RRGRVVLIGDAAHAMHPLAGQG 297

Query: 379 MNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALS 424
            N  ++DA  LA  +A+  +  A A+ L  YE  R+P AE    LS
Sbjct: 298 ANLALEDAAALAEALAAAPRPGADAAALAAYEARRRPRAEAIQKLS 343

Length = 387

>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

 Score =  129 bits (326), Expect = 1e-32
 Identities = 106/409 (25%), Positives = 170/409 (41%), Gaps = 92/409 (22%)

Query: 44  VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAE 103
             V+IVGAGPVGL L+ LL + G++  VLE+       P+A  I++    V + + GLA+
Sbjct: 11  TDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAI-GLAD 69

Query: 104 EIER-SQPPVDLWRKFIYCTSVTGPILGSVDH--MQPQDFEKVVSPVSVAHFSQYKLNKL 160
           E+   + P   + R   +  +  G  L  +         +     P   A F Q  L  +
Sbjct: 70  EVLPHTTPNHGM-R---FLDA-KGRCLAEIARPSTGEFGW-----PRRNA-FHQPLLEAV 118

Query: 161 LLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCT 220
           L   L +                       +  GHE  +++  D  + V  +   +G+  
Sbjct: 119 LRAGLARF------------------PHVRVRFGHEVTALTQDDDGVTVTLTDA-DGQ-- 157

Query: 221 ERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLN-------E 273
              ++   ++G DGA S VR+ +G+        ++ + V  L  +      +        
Sbjct: 158 RETVRARYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQYCDPA 217

Query: 274 RPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDF-SPEICEKLIFKLVGWE 332
           RP             V + H  +  EF+L      P +  E   SPE           W 
Sbjct: 218 RPYTS----------VRLPHGRRRWEFML-----LPGETEEQLASPE---------NVWR 253

Query: 333 LSDIDVIDIKPWVM---------------HAEVAEKFLCCYNQIILAGDACHRFPPAGGF 377
           L       + PW                 HA VA+++     +++LAGDA H  PP  G 
Sbjct: 254 L-------LAPWGPTPDDAELIRHAVYTFHARVADRWRS--GRVLLAGDAAHLMPPFAGQ 304

Query: 378 GMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQ 426
           GMN+G++DA NLAWK+A+VL+  A  ++L+TYE ER+P A     L+V+
Sbjct: 305 GMNSGIRDAANLAWKLAAVLRGRAGDALLDTYEQERRPHARAMIDLAVR 353

Length = 500

>gnl|CDD|236199 PRK08244, PRK08244, hypothetical protein; Provisional

 Score =  121 bits (304), Expect = 7e-30
 Identities = 105/387 (27%), Positives = 159/387 (41%), Gaps = 74/387 (19%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEK-------NKAFSTHPQAHFINNRYALVFRKL 98
           V+I+G GPVGL+L+  L   G+K  V+E+       +KA + HP+         L    +
Sbjct: 5   VIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRT--------LEILDM 56

Query: 99  DGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLN 158
            GL E                                    F +    +   HF+     
Sbjct: 57  RGLLER-----------------------------------FLEKGRKLPSGHFAGLD-T 80

Query: 159 KLLLKQLE-KLNFK--ICTSEGTEGLHNHLLQ-GREILMGHECVSVSATDQCINVIASFL 214
           +L    L+   N+   +  +E  + L  H    G EI  G E ++V      + V+    
Sbjct: 81  RLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVR-- 138

Query: 215 KEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNER 274
             G    R +  + ++G DGAGS VRK  GI   G  D          +  LGD +L + 
Sbjct: 139 --GPDGLRTLTSSYVVGADGAGSIVRKQAGIAFPG-TDAT-------FTAMLGDVVLKDP 188

Query: 275 PGMLFFIFNTEAIGVLVAHDLKEGEF-ILQVPFYPPQQNLEDFSPEICEKLIFKLVGWEL 333
           P        T   GV++   L  G + +L +    PQ   ++  P   E+L   L+    
Sbjct: 189 PPSSVLSLCTREGGVMIV-PLSGGIYRVLIIDPERPQVPKDE--PVTLEELKTSLIRICG 245

Query: 334 SDIDVIDIKPWVMHAEVAEKFLCCY--NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAW 391
           +D  + D   W+     A +    Y   +I LAGDA H   PAGG G+N G+QDA NL W
Sbjct: 246 TDFGLNDPV-WMSRFGNATRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGW 304

Query: 392 KIASVLKDIAPASILNTYETERKPIAE 418
           K+A+ +K  AP  +L++Y  ER P+  
Sbjct: 305 KLAAAIKGWAPDWLLDSYHAERHPVGT 331

Length = 493

>gnl|CDD|235870 PRK06834, PRK06834, hypothetical protein; Provisional

 Score = 87.0 bits (216), Expect = 2e-18
 Identities = 33/58 (56%), Positives = 42/58 (72%)

Query: 361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE 418
           ++LAGDA H   P GG G+NTGVQDA NL WK+A V+K  +P S+L+TY  ER P+A 
Sbjct: 267 VLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKGTSPESLLDTYHAERHPVAA 324

Length = 488

>gnl|CDD|235955 PRK07190, PRK07190, hypothetical protein; Provisional

 Score = 83.7 bits (207), Expect = 3e-17
 Identities = 34/68 (50%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 350 VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTY 409
           VAE F    ++I LAGDACH     GG G+NTG+ DA NL WK+  V+   A   +L +Y
Sbjct: 267 VAEHF-FIQDRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHHGASPELLQSY 325

Query: 410 ETERKPIA 417
           E ERKP+A
Sbjct: 326 EAERKPVA 333

Length = 487

>gnl|CDD|236158 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional

 Score = 82.2 bits (204), Expect = 8e-17
 Identities = 29/62 (46%), Positives = 44/62 (70%), Gaps = 2/62 (3%)

Query: 352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYET 411
           ++F   + +++ AGDA H+  P G  G N+G+QDA NLAWK+A VL+  AP S+L++Y +
Sbjct: 294 DRFR--HGRVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRGRAPDSLLDSYAS 351

Query: 412 ER 413
           ER
Sbjct: 352 ER 353

Length = 547

>gnl|CDD|236223 PRK08294, PRK08294, phenol 2-monooxygenase; Provisional

 Score = 78.9 bits (195), Expect = 1e-15
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 8/86 (9%)

Query: 361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIA--- 417
           + +AGDACH      G GMN  +QD  NL WK+A+VL   +P  +L+TY  ER+ IA   
Sbjct: 342 VFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGRSPPELLHTYSAERQAIAQEL 401

Query: 418 -----EFNTALSVQNFRAAMEVPSAL 438
                E++T ++          P+ L
Sbjct: 402 IDFDREWSTMMAAPPKEGGGVDPAEL 427

Length = 634

>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase

 Score = 53.9 bits (130), Expect = 7e-08
 Identities = 79/381 (20%), Positives = 133/381 (34%), Gaps = 63/381 (16%)

Query: 46  VLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEE 104
           V+IVG G VGL L++ L++LG IK +++E N        A    +  +L      G  + 
Sbjct: 2   VIIVGGGLVGLSLALALSRLGKIKIALIEANSP----SAAQPGFDARSLALS--YGSKQI 55

Query: 105 IERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKV---VSPVSVAHFSQY----KL 157
           +E+    + LW K         PIL  +       F       S   +           L
Sbjct: 56  LEK----LGLWPKL---APFATPIL-DIHVSDQGHFGATHLRASEFGLPALGYVVELADL 107

Query: 158 NKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEG 217
            + LL +L  L   I                 ++        +      + V        
Sbjct: 108 GQALLSRLALLT-NI-----------------QLYCPARYKEIIRNQDYVRVTLD----- 144

Query: 218 KCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM 277
               + ++  +LI  DGA S VR+L+ I        Q  +  +   +        ER   
Sbjct: 145 --NGQQLRAKLLIAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQPHQGCAFER--- 199

Query: 278 LFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIF--KLVGWELS 334
            F      A+  L   D      +  +P    Q   + +      E L    +  GW L 
Sbjct: 200 -FTPHGPLAL--LPLKDNYRSSLVWCLP--SKQADTIANLPDA--EFLAELQQAFGWRLG 252

Query: 335 DI-DVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKI 393
            I  V + K + +   +AE  +  + +++L G+A     P  G G N G++D   LA  +
Sbjct: 253 KITQVGERKTYPLKLRIAETHV--HPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVL 310

Query: 394 ASVLKDIAPASILNTYETERK 414
                D+   ++L  Y   R+
Sbjct: 311 IDARIDLGTYALLQEYLRRRQ 331

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 382

>gnl|CDD|236158 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional

 Score = 52.6 bits (127), Expect = 3e-07
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 22 PYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST 80
           + Y                A  PV++VGAGPVGL L+I L + G+   +L+ +   ST
Sbjct: 7  KFPYRPHADQDADDP-----ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLST 60

Length = 547

>gnl|CDD|233672 TIGR01989, COQ6, ubiquinone biosynthesis monooxygenase COQ6

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 357 CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIA---SVLKDIAPASILNTYETER 413
              ++ L GDA HR  P  G G+N G  D  +L   +A   SV  DI   S L  YE ER
Sbjct: 331 VTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGADIGSISSLKPYERER 390

Query: 414 KP 415
             
Sbjct: 391 YA 392

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone. Length = 437

>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 16/122 (13%)

Query: 344 WVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPA 403
           W +  +VA +F     +  L G+A H FPP G  G+N G++D   L   +    +D   A
Sbjct: 267 WPLSGQVAHRF--AAGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRPEDPGSA 324

Query: 404 SILNTYETERKP--------IAEFNTAL-----SVQNFRAA-MEVPSALGLDPTIANSEG 449
           ++L  Y+  R+P        +   N +L      VQ+ RAA + +  + G    +   EG
Sbjct: 325 AVLAAYDRARRPDILSRTASVDLLNRSLLSDFLPVQDLRAAGLHLLYSFGPLRRLFMREG 384

Query: 450 IA 451
           + 
Sbjct: 385 LG 386

Length = 388

>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIA---SVLKDIAPASILNTYETERKP 415
           + L GDA H   P  G G+N G++D   LA  +       +DI    +L  YE  R+ 
Sbjct: 280 LALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRF 337

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4,) and UbiF (which acts at position 5,). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6,) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 387

>gnl|CDD|235729 PRK06185, PRK06185, hypothetical protein; Provisional

 Score = 45.2 bits (108), Expect = 4e-05
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78
            IVG GP G++L +LL + G+  +VLEK+  F
Sbjct: 9  CCIVGGGPAGMMLGLLLARAGVDVTVLEKHADF 41

Length = 407

>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 363 LAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL---KDIAPASILNTYETERKP 415
           L GDA H   P GG G+N G++DA  LA  + +     +DI   ++L  YE  RK 
Sbjct: 298 LVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWRKR 353

Length = 415

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 44.4 bits (105), Expect = 7e-05
 Identities = 43/210 (20%), Positives = 64/210 (30%), Gaps = 47/210 (22%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLD-GLAEE 104
           V+IVGAGP G   +  L K G+   VLEK       P              +L     EE
Sbjct: 6   VVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGL--SPRALEELIPDFDEE 63

Query: 105 IERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQ 164
           IER      +    IY       I   V          +V           K +K L ++
Sbjct: 64  IER-----KVTGARIYFPGEKVAIEVPV------GEGYIVDRA--------KFDKWLAER 104

Query: 165 LEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNI 224
            E+                    G E+  G     V   D    V+             +
Sbjct: 105 AEE-------------------AGAELYPGTRVTGVIRED--DGVVVGVRAGDD----EV 139

Query: 225 QCNILIGTDGAGSTVRKLVGIDLVGEKDLQ 254
           +  ++I  DG  S + + +G+     +D  
Sbjct: 140 RAKVVIDADGVNSALARKLGLKDRKPEDYA 169

Length = 396

>gnl|CDD|136171 PRK07045, PRK07045, putative monooxygenase; Reviewed

 Score = 44.5 bits (105), Expect = 8e-05
 Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 18/97 (18%)

Query: 361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD-IAPASILNTYETERKPIAE- 418
           ++L GDA H   P  G GMN  ++DA  L   +   L   IA A  L  +E  R+P+ E 
Sbjct: 287 VVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQIALADALERFERIRRPVNEA 346

Query: 419 ---FNTALS---------VQNFRAAMEV----PSALG 439
              +  AL+         V NFR+ ++      + LG
Sbjct: 347 VISYGHALATTYHDRAALVANFRSQLQTSGRDAAWLG 383

Length = 388

>gnl|CDD|236198 PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygenase; Validated

 Score = 44.4 bits (106), Expect = 8e-05
 Identities = 16/31 (51%), Positives = 19/31 (61%)

Query: 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEK 74
            V I+GAGP GL+L  LL   GI   VLE+
Sbjct: 3  TQVAIIGAGPAGLLLGQLLHLAGIDSVVLER 33

Length = 392

>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family protein; Provisional

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIAS--VLKDIAPASILNTYETERK 414
           + L GDA H   P  G GMN G++D   LA  +A     +D+    +L  YE  R+
Sbjct: 282 VALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFRDLGDLRLLRRYERARR 337

Length = 388

>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 54/227 (23%), Positives = 80/227 (35%), Gaps = 64/227 (28%)

Query: 46  VLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTHPQAHFINNR-YALVFRKLDGLAE 103
           ++IVG GPVGL L++ L + G +K +++E        P     +NR  AL          
Sbjct: 2   IVIVGGGPVGLALALALARSGGLKVALIEATPL--PAPADPGFDNRVSAL---------- 49

Query: 104 EIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLK 163
               S   + L  K           LG  D ++P        P+   H S          
Sbjct: 50  ----SAASIRLLEK-----------LGVWDKIEPAR----AQPIRDIHVSDGG------- 83

Query: 164 QLEKLNFKICTSEGTEGL----HNHLLQGR------------EILMGHECVSVSATDQCI 207
               L+F      G E L     N +LQ               IL     V +      +
Sbjct: 84  SFGALHFD-ADEIGLEALGYVVENRVLQQALWERLQELPNRVTILCPARVVELPRHSDHV 142

Query: 208 NVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQ 254
            +    L +G    + ++  +L+G DGA S VR+L GI   G    Q
Sbjct: 143 ELT---LDDG----QQLRARLLVGADGANSKVRQLAGIPTTGWDYGQ 182

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4,) and UbiF (which acts at position 5,). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6,) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 387

>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 48/215 (22%), Positives = 79/215 (36%), Gaps = 60/215 (27%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEI 105
           +++VGAGP GL  +  L   G+K +++E+       P A   +  +       DG   EI
Sbjct: 6   IVVVGAGPAGLSFARSLAGSGLKVTLIER------QPLAALADPAF-------DG--REI 50

Query: 106 ERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQL 165
             +    ++ ++           LG+ D + P+D    +SP+  A     +         
Sbjct: 51  ALTHASREILQR-----------LGAWDRI-PED---EISPLRDAKVLNGRSPFA----- 90

Query: 166 EKLNFKICTSEGTEGL----HNHLL-----------QGREILMGHECVSVSATDQCINVI 210
             L F      G + L     NHL+            G E+L G    +V   D    V 
Sbjct: 91  --LTFDA-RGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVT 147

Query: 211 ASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGI 245
              L  G    R +   +L+  D   S  R+ +GI
Sbjct: 148 ---LANG----RRLTARLLVAADSRFSATRRQLGI 175

Length = 392

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 15/30 (50%), Positives = 22/30 (73%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
          V+++GAG  GL  + LL + G+K +VLEKN
Sbjct: 6  VVVIGAGLNGLAAAALLARAGLKVTVLEKN 35

Length = 487

>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional

 Score = 40.6 bits (96), Expect = 8e-04
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78
          V V IVGAGP GL  +  L K G+K +V E+  +F
Sbjct: 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSF 60

Length = 257

>gnl|CDD|236198 PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygenase; Validated

 Score = 40.9 bits (97), Expect = 9e-04
 Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 13/104 (12%)

Query: 302 LQVPFYPPQQNLEDFSPE-ICEKLIFKL---VGWELSDIDVID--IKPWVMHAEVAEKFL 355
           LQ P       +ED+S E   ++L  +L       L     I+  I P  + + VAE   
Sbjct: 223 LQCP---LDDKVEDWSDERFWDELRRRLPPEDAERLVTGPSIEKSIAP--LRSFVAEPMQ 277

Query: 356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD 399
             Y ++ LAGDA H  PP G  G+N    D   LA  +    ++
Sbjct: 278 --YGRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYRE 319

Length = 392

>gnl|CDD|131413 TIGR02360, pbenz_hydroxyl, 4-hydroxybenzoate 3-monooxygenase

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 15/32 (46%), Positives = 18/32 (56%)

Query: 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNL 389
           Y ++ LAGDA H  PP G  G+N    D H L
Sbjct: 278 YGRLFLAGDAAHIVPPTGAKGLNLAASDVHYL 309

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway [Energy metabolism, Other]. Length = 390

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 35.9 bits (84), Expect = 0.002
 Identities = 16/28 (57%), Positives = 17/28 (60%)

Query: 48 IVGAGPVGLVLSILLTKLGIKCSVLEKN 75
          IVGAG  GLV + LL K G    VLEK 
Sbjct: 1  IVGAGLSGLVAAYLLAKRGKDVLVLEKR 28

Length = 66

>gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system oxidoreductase, YpdA family

 Score = 39.1 bits (92), Expect = 0.003
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEK 74
          V+I+GAGP GL  +I   K G+   ++EK
Sbjct: 2  VIIIGAGPCGLACAIEAQKAGLSYLIIEK 30

Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete [Unknown function, Enzymes of unknown specificity]. Length = 316

>gnl|CDD|234447 TIGR04046, MSMEG_0569_nitr, flavin-dependent oxidoreductase, MSMEG_0569 family

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77
           PV+I+GAG  GL +S  L + GI   VLEK+  
Sbjct: 1  YPVVIIGAGQAGLSVSYYLKQAGIDHVVLEKHTV 34

Members of this protein family belong to a conserved seven-gene biosynthetic cluster found sparsely in Cyanobacteria, Proteobacteria, and Actinobacteria. Distant homologies to characterized proteins suggest that members are enzymes dependent on a flavinoid cofactor. Length = 400

>gnl|CDD|236341 PRK08850, PRK08850, 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 360 QIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL---KDIAPASILNTYETERKPI 416
           ++ L GDA H   P  G G+N G+ DA +LA +I ++    +DI     L  YE  RK  
Sbjct: 283 RVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERWRKAE 342

Query: 417 AEFNTALSVQNFR 429
           A    A ++Q FR
Sbjct: 343 AAKMIA-AMQGFR 354

Length = 405

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	455
PRK06126	545	hypothetical protein; Provisional	100.0
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	100.0
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	100.0
PRK06184	502	hypothetical protein; Provisional	100.0
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	100.0
PRK08244	493	hypothetical protein; Provisional	100.0
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	100.0
PRK08013	400	oxidoreductase; Provisional	100.0
PRK08294	634	phenol 2-monooxygenase; Provisional	100.0
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	100.0
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	100.0
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	100.0
PRK08132	547	FAD-dependent oxidoreductase; Provisional	100.0
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	100.0
PRK06834	488	hypothetical protein; Provisional	100.0
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	100.0
PRK07045	388	putative monooxygenase; Reviewed	100.0
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	100.0
PRK07190	487	hypothetical protein; Provisional	100.0
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	100.0
PRK06475	400	salicylate hydroxylase; Provisional	100.0
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	100.0
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	100.0
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	100.0
PRK06753	373	hypothetical protein; Provisional	100.0
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	100.0
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	100.0
PRK09126	392	hypothetical protein; Provisional	100.0
PRK07538	413	hypothetical protein; Provisional	100.0
PRK06996	398	hypothetical protein; Provisional	100.0
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	100.0
PRK07588	391	hypothetical protein; Provisional	100.0
PRK06185	407	hypothetical protein; Provisional	100.0
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	100.0
PRK08163	396	salicylate hydroxylase; Provisional	100.0
PRK06847	375	hypothetical protein; Provisional	100.0
PRK05868	372	hypothetical protein; Validated	100.0
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	100.0
PRK07236	386	hypothetical protein; Provisional	100.0
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	100.0
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	100.0
PLN02985	514	squalene monooxygenase	100.0
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	100.0
PTZ00367	567	squalene epoxidase; Provisional	100.0
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	100.0
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.98
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	99.97
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	99.97
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.97
PRK11445	351	putative oxidoreductase; Provisional	99.97
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.97
PRK10015	429	oxidoreductase; Provisional	99.96
PRK10157	428	putative oxidoreductase FixC; Provisional	99.95
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	99.95
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.94
PLN02697	529	lycopene epsilon cyclase	99.94
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	99.94
PLN02463	447	lycopene beta cyclase	99.93
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	99.91
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	99.9
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	99.88
PF08491	276	SE: Squalene epoxidase; InterPro: IPR013698 This d	99.61
COG2081	408	Predicted flavoproteins [General function predicti	99.54
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.51
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.49
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.49
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	99.46
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.4
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.38
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.37
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.37
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.36
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.34
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.3
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.29
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.29
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.29
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.28
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.25
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.25
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	99.23
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.23
COG0579	429	Predicted dehydrogenase [General function predicti	99.2
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.19
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.19
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	99.17
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	99.15
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	99.14
TIGR00275	400	flavoprotein, HI0933 family. The model when search	99.11
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.11
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.09
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	99.09
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.08
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	99.07
PRK07233	434	hypothetical protein; Provisional	99.07
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.07
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.06
PRK05257	494	malate:quinone oxidoreductase; Validated	99.05
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.04
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.04
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.02
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.02
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.01
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.0
PRK08274	466	tricarballylate dehydrogenase; Validated	98.99
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.97
PLN02661	357	Putative thiazole synthesis	98.96
PRK12416	463	protoporphyrinogen oxidase; Provisional	98.96
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.95
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.95
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.95
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.94
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.94
PRK07804	541	L-aspartate oxidase; Provisional	98.93
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.93
PRK07121	492	hypothetical protein; Validated	98.92
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.91
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.91
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.91
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.9
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.9
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.89
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.89
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.89
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.88
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.88
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.88
PLN02815	594	L-aspartate oxidase	98.86
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.86
PLN02612	567	phytoene desaturase	98.86
PRK06175	433	L-aspartate oxidase; Provisional	98.85
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.84
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.84
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.83
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.83
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.83
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.83
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.82
PRK08401	466	L-aspartate oxidase; Provisional	98.81
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.8
PRK08275	554	putative oxidoreductase; Provisional	98.79
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.79
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.79
PRK06370	463	mercuric reductase; Validated	98.77
PRK09897	534	hypothetical protein; Provisional	98.74
PRK08071	510	L-aspartate oxidase; Provisional	98.73
PLN02676	487	polyamine oxidase	98.73
PRK10262	321	thioredoxin reductase; Provisional	98.72
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.72
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.71
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.7
PRK09077	536	L-aspartate oxidase; Provisional	98.67
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.67
PLN02568	539	polyamine oxidase	98.66
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.66
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.65
PLN02487	569	zeta-carotene desaturase	98.65
PRK06116	450	glutathione reductase; Validated	98.65
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.65
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.64
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.63
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.63
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.63
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.63
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.62
PRK14694	468	putative mercuric reductase; Provisional	98.62
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.62
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.61
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.6
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.59
PRK07395	553	L-aspartate oxidase; Provisional	98.58
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.58
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.57
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.57
PRK12839	572	hypothetical protein; Provisional	98.56
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.55
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.55
PLN02328	808	lysine-specific histone demethylase 1 homolog	98.55
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.55
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.54
PLN02268	435	probable polyamine oxidase	98.53
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.53
PRK07512	513	L-aspartate oxidase; Provisional	98.53
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	98.5
PLN02529	738	lysine-specific histone demethylase 1	98.49
PTZ00052	499	thioredoxin reductase; Provisional	98.48
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.48
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.47
KOG2853	509	consensus Possible oxidoreductase [General functio	98.47
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.46
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.45
PTZ00058	561	glutathione reductase; Provisional	98.43
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.43
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.43
PRK13748	561	putative mercuric reductase; Provisional	98.43
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.42
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	98.41
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.41
PLN02507	499	glutathione reductase	98.4
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.39
PLN02976	1713	amine oxidase	98.39
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.38
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.38
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.37
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.36
PLN02546	558	glutathione reductase	98.36
PLN03000	881	amine oxidase	98.34
PRK14727	479	putative mercuric reductase; Provisional	98.34
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.34
TIGR02053	463	MerA mercuric reductase. This model represents the	98.33
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.33
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.32
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.32
PLN02852	491	ferredoxin-NADP+ reductase	98.31
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.31
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	98.31
KOG2852	380	consensus Possible oxidoreductase [General functio	98.3
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.28
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.27
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.26
PRK12831	464	putative oxidoreductase; Provisional	98.26
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.23
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.22
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	98.21
PRK07208	479	hypothetical protein; Provisional	98.2
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	98.2
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.2
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	98.2
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	98.19
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.18
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.18
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.18
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.18
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.17
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.16
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.16
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.14
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.12
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	98.11
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.1
COG3349	485	Uncharacterized conserved protein [Function unknow	98.09
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.08
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.08
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.07
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.07
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	98.06
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.04
TIGR02053	463	MerA mercuric reductase. This model represents the	98.04
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.04
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.02
PRK06370	463	mercuric reductase; Validated	98.02
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.02
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.01
PRK07846	451	mycothione reductase; Reviewed	98.0
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.0
PRK06116	450	glutathione reductase; Validated	97.99
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	97.98
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.98
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.97
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	97.97
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.96
PLN02576	496	protoporphyrinogen oxidase	97.96
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.94
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.93
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.93
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	97.93
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.92
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.92
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.9
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	97.89
PLN02507	499	glutathione reductase	97.89
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.88
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.87
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	97.86
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	97.86
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.86
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.85
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	97.83
PRK07846	451	mycothione reductase; Reviewed	97.82
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.78
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.77
PLN02785	587	Protein HOTHEAD	97.77
PRK14694	468	putative mercuric reductase; Provisional	97.77
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	97.77
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	97.77
PRK14727	479	putative mercuric reductase; Provisional	97.76
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.76
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.76
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.75
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.74
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.73
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.72
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.72
PTZ00052	499	thioredoxin reductase; Provisional	97.71
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.71
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.7
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.7
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.69
PRK02106	560	choline dehydrogenase; Validated	97.69
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	97.68
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.67
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.66
PTZ00188	506	adrenodoxin reductase; Provisional	97.66
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.65
PRK13748	561	putative mercuric reductase; Provisional	97.65
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.64
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.63
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.63
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.62
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.62
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.61
PTZ00058	561	glutathione reductase; Provisional	97.58
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.58
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.5
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.49
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.44
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	97.43
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.43
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	97.42
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.4
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.39
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.39
COG3573	552	Predicted oxidoreductase [General function predict	97.39
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.34
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	97.34
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	97.33
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	97.33
PLN02546	558	glutathione reductase	97.33
PRK10262	321	thioredoxin reductase; Provisional	97.32
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.32
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	97.31
KOG2960	328	consensus Protein involved in thiamine biosynthesi	97.31
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.31
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.28
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.27
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	97.26
COG2907	447	Predicted NAD/FAD-binding protein [General functio	97.24
PRK13984	604	putative oxidoreductase; Provisional	97.08
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	97.04
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.04
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.04
PRK12770	352	putative glutamate synthase subunit beta; Provisio	96.96
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	96.93
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	96.91
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	96.84
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	96.83
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	96.77
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	96.72
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	96.62
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	96.6
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	96.54
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	96.52
PRK12831	464	putative oxidoreductase; Provisional	96.43
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	96.42
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.37
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.29
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	96.2
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	96.05
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	95.98
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	95.91
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	95.87
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	95.81
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	95.75
PRK12814	652	putative NADPH-dependent glutamate synthase small	95.74
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.74
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.72
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	95.68
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	95.67
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	95.65
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.62
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	95.6
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.58
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.48
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.46
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	95.37
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	95.36
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.34
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	95.32
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.28
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	95.08
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.05
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.02
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.98
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	94.89
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	94.85
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	94.68
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	94.57
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	94.56
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.55
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	94.53
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	94.52
PRK12779	944	putative bifunctional glutamate synthase subunit b	94.3
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	94.26
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	94.26
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	94.22
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	94.22
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.18
PRK06719	157	precorrin-2 dehydrogenase; Validated	94.18
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	94.08
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	94.06
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	94.04
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	93.99
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	93.98
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.97
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	93.93
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	93.92
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	93.84
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	93.79
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	93.68
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	93.66
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.52
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	93.43
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.33
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	93.33
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	93.3
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	93.29
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	93.28
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	93.26
PRK04148	134	hypothetical protein; Provisional	93.25
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	93.25
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	93.24
KOG2755	334	consensus Oxidoreductase [General function predict	93.13
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	93.09
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	93.09
PLN02852	491	ferredoxin-NADP+ reductase	93.06
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	93.0
PTZ00082	321	L-lactate dehydrogenase; Provisional	92.93
PRK07417	279	arogenate dehydrogenase; Reviewed	92.92
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	92.92
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	92.91
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	92.9
PRK15116	268	sulfur acceptor protein CsdL; Provisional	92.84
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	92.8
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	92.74
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	92.61
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	92.58
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	92.51
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	92.32
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	92.29
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	92.28
PRK11730	715	fadB multifunctional fatty acid oxidation complex	92.25
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	92.23
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	92.14
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.13
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	92.11
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	92.08
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	91.96
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	91.94
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.88
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	91.81
PRK06223	307	malate dehydrogenase; Reviewed	91.78
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	91.66
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	91.65
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	91.65
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	91.47
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	91.41
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	91.26
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	91.23
PRK13984	604	putative oxidoreductase; Provisional	91.22
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	91.19
PRK08306	296	dipicolinate synthase subunit A; Reviewed	91.15
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	91.05
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	91.04
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	90.97
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	90.93
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	90.9
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	90.88
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.86
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	90.84
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	90.81
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	90.75
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.75
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	90.75
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	90.72
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	90.68
PTZ00117	319	malate dehydrogenase; Provisional	90.63
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	90.55
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	90.52
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	90.47
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	90.47
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	90.38
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	90.36
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	90.35
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	90.28
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	90.27
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.24
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	90.16
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.12
PLN02695	370	GDP-D-mannose-3',5'-epimerase	90.11
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.11
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	90.08
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	90.05
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	90.0
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	89.94
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	89.87
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	89.8
PRK08328	231	hypothetical protein; Provisional	89.78
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	89.72
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	89.64
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	89.56

>PRK06126 hypothetical protein; Provisional

Probab=100.00  E-value=1.3e-41  Score=354.11  Aligned_cols=364  Identities=31%  Similarity=0.511  Sum_probs=263.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      +..+||+||||||+||++|+.|+++|++|+||||.+.+...+++..++++++++|+++ |+.+++.+.+.+........+
T Consensus         5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~l-Gl~~~l~~~g~~~~~~~~~~~   83 (545)
T PRK06126          5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRL-GIADEVRSAGLPVDYPTDIAY   83 (545)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhc-ChHHHHHhhcCCccccCCceE
Confidence            5678999999999999999999999999999999988888889999999999999999 999999887765422122222


Q ss_pred             eecCCCCccccccCCCccc---c-----ccccCCccccccchhhHHHHHHHHHHhc-ccccccCCCcccccccccccceE
Q 012845          121 CTSVTGPILGSVDHMQPQD---F-----EKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREI  191 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~i~r~~l~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i  191 (455)
                      .....|..+..........   .     .....+.....++|..|.+.|.+.+.+. ++                   +|
T Consensus        84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v-------------------~i  144 (545)
T PRK06126         84 FTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGV-------------------TL  144 (545)
T ss_pred             EecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCc-------------------eE
Confidence            2233444433322111100   0     0001233345688999999999999875 44                   99


Q ss_pred             EeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccc
Q 012845          192 LMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLL  271 (455)
Q Consensus       192 ~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (455)
                      +++++|++++.+++++.+++...++|.  ..++.+|+||+|||.+|.||+++++.+.+..+....+...+...+.... .
T Consensus       145 ~~~~~v~~i~~~~~~v~v~~~~~~~g~--~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~-~  221 (545)
T PRK06126        145 RYGHRLTDFEQDADGVTATVEDLDGGE--SLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAAL-V  221 (545)
T ss_pred             EeccEEEEEEECCCeEEEEEEECCCCc--EEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHH-h
Confidence            999999999988888777766323342  3478999999999999999999998887777666655544433332221 1


Q ss_pred             cCCCceEEEEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEeceeee
Q 012845          272 NERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVA  351 (455)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (455)
                      ...+...++++.++....+...+ ....|.+. .... ......++++.+.+.+++.++.. ...++.....|.......
T Consensus       222 ~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~w~~~~~~a  297 (545)
T PRK06126        222 GHDPAWMYWLFNPDRRGVLVAID-GRDEWLFH-QLRG-GEDEFTIDDVDARAFVRRGVGED-IDYEVLSVVPWTGRRLVA  297 (545)
T ss_pred             cCCCceEEEEECCCccEEEEEEC-CCCeEEEE-EecC-CCCCCCCCHHHHHHHHHHhcCCC-CCeEEEeecccchhheeh
Confidence            22344455555665554444433 23344443 1222 12223456677888888877633 344556666777766777


Q ss_pred             cccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHH
Q 012845          352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA  431 (455)
Q Consensus       352 ~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~  431 (455)
                      +.|..  +||+|+|||||.|+|+.|||+|+||+||..|+++|...+++....++|+.|+++|+++++.+++.|+.++..+
T Consensus       298 ~~~~~--gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~~~~~~lL~~Y~~eR~p~~~~~~~~s~~~~~~~  375 (545)
T PRK06126        298 DSYRR--GRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGWAGPALLDSYEAERRPIAARNTDYARRNADAL  375 (545)
T ss_pred             hhhcc--CCEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcCCCcHHHHhhhHHHhhHHHHHHHHHHHHHHHHh
Confidence            88864  9999999999999999999999999999999999998877666789999999999999999999999988766


Q ss_pred             hc
Q 012845          432 ME  433 (455)
Q Consensus       432 ~~  433 (455)
                      ..
T Consensus       376 ~~  377 (545)
T PRK06126        376 GS  377 (545)
T ss_pred             cc
Confidence            53

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=100.00  E-value=2.6e-42  Score=340.54  Aligned_cols=352  Identities=26%  Similarity=0.402  Sum_probs=236.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ++||+||||||+||++|+.|+++|++|+||||++.+...+++..++++++++|+.+ |+++.+.....+...+.......
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~l-gl~~~~~~~~~~~~~~~~~~~~~   79 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRL-GLLDEILARGSPHEVMRIFFYDG   79 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHT-TEHHHHHHHSEEECEEEEEEEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccc-cchhhhhhhcccccceeeEeecc
Confidence            47999999999999999999999999999999999988889999999999999999 99999988764433222211111


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                       ..+.........................+.|..|++.|.+.+++.|+                   +++++++|++++.
T Consensus        80 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv-------------------~i~~~~~v~~~~~  139 (356)
T PF01494_consen   80 -ISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGV-------------------DIRFGTRVVSIEQ  139 (356)
T ss_dssp             -TTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTE-------------------EEEESEEEEEEEE
T ss_pred             -cCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhh-------------------hheeeeecccccc
Confidence             00000000000000011101113335668899999999999999886                   9999999999999


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCccc--ceeEEEEEecCCcccccccCCCceEEE
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDL--QKLVSVHFLSKDLGDYLLNERPGMLFF  280 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (455)
                      +++++.+.+....+  +..+++++|+||+|||.+|.+|++++.........  ..++...... .....   ..+ ..+.
T Consensus       140 d~~~~~~~~~~~~~--g~~~~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~-~~~~  212 (356)
T PF01494_consen  140 DDDGVTVVVRDGED--GEEETIEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDS-DLSDP---WED-HCFI  212 (356)
T ss_dssp             ETTEEEEEEEETCT--CEEEEEEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEEC-HSHTT---TSC-EEEE
T ss_pred             cccccccccccccC--CceeEEEEeeeecccCcccchhhhccccccCcccccccccccccccc-ccccc---ccc-cccc
Confidence            88888877774333  33458899999999999999999998664332222  2222222211 11111   111 2333


Q ss_pred             EEccCceEEEEeecC-CCCeEEEEeecCCCCC-CCCCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEeceeeecccccCC
Q 012845          281 IFNTEAIGVLVAHDL-KEGEFILQVPFYPPQQ-NLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY  358 (455)
Q Consensus       281 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (455)
                      ...+....++.+... ....+.+.++...+.. .......+.+.+.+...+.......++.....|++.....++|..  
T Consensus       213 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  290 (356)
T PF01494_consen  213 YSPPSGGFAIIPLENGDRSRFVWFLPFDESKEERPEEFSPEELFANLPEIFGPDLLETEIDEISAWPIPQRVADRWVK--  290 (356)
T ss_dssp             EEETTEEEEEEEETTTTEEEEEEEEETTTTTCCSTHCHHHHHHHHHHHHHHHTCHHHHEEEEEEEEEEEEEEESSSEE--
T ss_pred             ccccccceeEeeccCCccceEEEeeecccccccccccccccccccccccccccccccccccccccccccccccccccc--
Confidence            333333333444443 2234455555443322 222333445555555555444333455566677777777777765  


Q ss_pred             CcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhH
Q 012845          359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALS  424 (455)
Q Consensus       359 ~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s  424 (455)
                      +||+|||||||.|+|+.|||+|+||+||..|+++|.+..++....++|+.|+++|+++++.+++++
T Consensus       291 grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~g~~~~~~l~~Y~~~r~~~~~~~~~~~  356 (356)
T PF01494_consen  291 GRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALKGEASEEALKAYEQERRPRARKAVQFD  356 (356)
T ss_dssp             TTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence            899999999999999999999999999999999999998777778899999999999999998864

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=100.00  E-value=5.8e-40  Score=340.58  Aligned_cols=349  Identities=28%  Similarity=0.419  Sum_probs=248.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      +..+||+||||||+|+++|+.|+++|++|+||||.+.+...++++.+.+++++.|+++ |+.+.+...+.+...   ..+
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~---~~~   83 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAI-GLADEVLPHTTPNHG---MRF   83 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHc-CChhHHHhhcccCCc---eEE
Confidence            3568999999999999999999999999999999998888888999999999999999 999998876655432   222


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhc-ccccccCCCcccccccccccceEEeccEEEE
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~  199 (455)
                      . +..|..+..++.......    .......+.|..+++.|++.+.+. |+                   +|+++++|++
T Consensus        84 ~-~~~g~~~~~~~~~~~~~~----g~~~~~~~~q~~le~~L~~~~~~~~gv-------------------~v~~g~~v~~  139 (538)
T PRK06183         84 L-DAKGRCLAEIARPSTGEF----GWPRRNAFHQPLLEAVLRAGLARFPHV-------------------RVRFGHEVTA  139 (538)
T ss_pred             E-cCCCCEEEEEcCCCCCCC----CCChhccCChHHHHHHHHHHHHhCCCc-------------------EEEcCCEEEE
Confidence            2 234444333321110000    011235678999999999998875 54                   9999999999


Q ss_pred             eeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEE
Q 012845          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF  279 (455)
Q Consensus       200 i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (455)
                      ++++++++.+++.   +.++.++++++|+||+|||.+|.+|++++..+.+..+...++.........     .......+
T Consensus       140 i~~~~~~v~v~~~---~~~G~~~~i~ad~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  211 (538)
T PRK06183        140 LTQDDDGVTVTLT---DADGQRETVRARYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIAND-----PLGGPHTY  211 (538)
T ss_pred             EEEcCCeEEEEEE---cCCCCEEEEEEEEEEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccC-----ccCCCceE
Confidence            9998888887776   322223478999999999999999999998777666666655444321111     11122234


Q ss_pred             EEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCC-CHHHHHHHHHHhhCCCCCCeeEEEeeceEeceeeecccccCC
Q 012845          280 FIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDF-SPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY  358 (455)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (455)
                      ..+.+++...++..+  .+.+.|.+..... +....+ +.+.+.+++..+. ......++.....|.+.....+.|..  
T Consensus       212 ~~~~~~~~~~~~p~~--~~~~r~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~--  285 (538)
T PRK06183        212 QYCDPARPYTSVRLP--HGRRRWEFMLLPG-ETEEQLASPENVWRLLAPWG-PTPDDAELIRHAVYTFHARVADRWRS--  285 (538)
T ss_pred             EEECCCCCEEEEEcC--CCeEEEEEEeCCC-CChhhcCCHHHHHHHHHhhC-CCCcceEEEEEEeeeEccEEhhhhcc--
Confidence            445565555544443  3443333332221 112222 4556666666543 22333445555566666666777764  


Q ss_pred             CcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHH
Q 012845          359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA  431 (455)
Q Consensus       359 ~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~  431 (455)
                      +||+|+|||||.|+|+.|||+|+||+||..|+++|...+++.....+|+.|+++|++++..++..+..+.+.+
T Consensus       286 gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g~~~~~~L~~Ye~eR~p~~~~~~~~s~~~~~~~  358 (538)
T PRK06183        286 GRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRGRAGDALLDTYEQERRPHARAMIDLAVRLGRVI  358 (538)
T ss_pred             CCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            9999999999999999999999999999999999998776666789999999999999999999988765543

>PRK06184 hypothetical protein; Provisional

Probab=100.00  E-value=5.2e-40  Score=338.56  Aligned_cols=349  Identities=28%  Similarity=0.386  Sum_probs=245.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEe
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~  121 (455)
                      .++||+||||||+||++|+.|+++|++|+||||.+.+....++.+|+++++++|+++ |+.+++.+.+.+......+   
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~l-Gl~~~l~~~~~~~~~~~~~---   77 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDL-GVLDRVVAAGGLYPPMRIY---   77 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHc-CcHHHHHhcCccccceeEE---
Confidence            458999999999999999999999999999999998888889999999999999999 9999998876554322111   


Q ss_pred             ecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEee
Q 012845          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (455)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~  201 (455)
                       ...+... .....................+.|..+++.|.+.+.+.|+                   +++++++|++++
T Consensus        78 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv-------------------~i~~~~~v~~i~  136 (502)
T PRK06184         78 -RDDGSVA-ESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGH-------------------RVEFGCELVGFE  136 (502)
T ss_pred             -eCCceEE-EeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCC-------------------EEEeCcEEEEEE
Confidence             1112111 1111000000000001123567899999999999998886                   999999999999


Q ss_pred             ecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccc-eeEEEEEecCCcccccccCCCceEEE
Q 012845          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQ-KLVSVHFLSKDLGDYLLNERPGMLFF  280 (455)
Q Consensus       202 ~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (455)
                      .+++++.+++...+++    +++++|+||+|||.+|.+|+++++.+.+..+.. .++.........       .+..++.
T Consensus       137 ~~~~~v~v~~~~~~~~----~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~-------~~~~~~~  205 (502)
T PRK06184        137 QDADGVTARVAGPAGE----ETVRARYLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGL-------DRDAWHQ  205 (502)
T ss_pred             EcCCcEEEEEEeCCCe----EEEEeCEEEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeecC-------CCcceEE
Confidence            8888877776422232    378999999999999999999998887776654 444333221111       1122222


Q ss_pred             EEccC-ceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCee-EEEeeceEeceeeecccccCC
Q 012845          281 IFNTE-AIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDID-VIDIKPWVMHAEVAEKFLCCY  358 (455)
Q Consensus       281 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  358 (455)
                      +..+. +...+++.+. ...+.+.+....  ......+.+.+.+.+....+....... +.....|....+..+.|..  
T Consensus       206 ~~~~~~~~~~~~p~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--  280 (502)
T PRK06184        206 WPDGDMGMIALCPLPG-TDLFQIQAPLPP--GGEPDLSADGLTALLAERTGRTDIRLHSVTWASAFRMNARLADRYRV--  280 (502)
T ss_pred             ccCCCCcEEEEEEccC-CCeEEEEEEcCC--CccCCCCHHHHHHHHHHhcCCCCcceeeeeeeeccccceeEhhhhcC--
Confidence            22332 3333333322 223444333222  222345677888888887764432222 2223455555666677764  


Q ss_pred             CcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHh
Q 012845          359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAM  432 (455)
Q Consensus       359 ~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~  432 (455)
                      +||+|+|||||.++|+.|||||+||+||..|+++|+..+++ ....+|+.|+++|++++..+++.+..+++...
T Consensus       281 gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g-~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~  353 (502)
T PRK06184        281 GRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAG-APEALLDTYEEERRPVAAAVLGLSTELLDAIK  353 (502)
T ss_pred             CcEEEeccccccCCCcccccccchHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999988877 67789999999999999999999999887643

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=100.00  E-value=2e-40  Score=330.60  Aligned_cols=346  Identities=24%  Similarity=0.321  Sum_probs=256.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC-CCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEe
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN-KAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~-~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~  121 (455)
                      .+||+||||||+||++|+.|++.|++|+||||. ......++++.|+++++++|+++ |+.+.+...+.+......    
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~l-G~~~~i~~~~~~~~~~~~----   76 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERL-GLWDRLEALGVPPLHVMV----   76 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHc-CChhhhhhccCCceeeEE----
Confidence            579999999999999999999999999999998 45566779999999999999999 997788775553321111    


Q ss_pred             ecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEee
Q 012845          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (455)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~  201 (455)
                      ....+.....++....      ........+.|..|.+.|.+.+.+.+.                  ++++++++|+.++
T Consensus        77 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~L~~~~~~~~~------------------v~~~~~~~v~~~~  132 (387)
T COG0654          77 VDDGGRRLLIFDAAEL------GRGALGYVVPRSDLLNALLEAARALPN------------------VTLRFGAEVEAVE  132 (387)
T ss_pred             EecCCceeEEeccccc------CCCcceEEeEhHHHHHHHHHHHhhCCC------------------cEEEcCceEEEEE
Confidence            1112211111111111      112235778999999999999998773                  4999999999999


Q ss_pred             ecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcC-CCccCCcccceeEEEEEecCCcccccccCCCceEEE
Q 012845          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVG-IDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF  280 (455)
Q Consensus       202 ~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (455)
                      .+++.+.+++..  +|.    ++++|+||+|||.+|.+|++++ .......|.+.++.......       .+.+...+.
T Consensus       133 ~~~~~v~v~l~~--dG~----~~~a~llVgADG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~-------~~~~~~~~~  199 (387)
T COG0654         133 QDGDGVTVTLSF--DGE----TLDADLLVGADGANSAVRRAAGIAEFSGRDYGQTALVANVEPE-------EPHEGRAGE  199 (387)
T ss_pred             EcCCceEEEEcC--CCc----EEecCEEEECCCCchHHHHhcCCCCccCCCCCceEEEEEeecC-------CCCCCeEEE
Confidence            999888877662  443    8899999999999999999999 55555577777777665543       234556666


Q ss_pred             EEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCC--CCCeeEEE-eeceEeceeeecccccC
Q 012845          281 IFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWE--LSDIDVID-IKPWVMHAEVAEKFLCC  357 (455)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~  357 (455)
                      .+.+.+...+++.+.......|..+ ....+....++.+.+...+.+.+++.  ........ ...+++.......|.. 
T Consensus       200 ~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pl~~~~a~~~~~-  277 (387)
T COG0654         200 RFTHAGPFALLPLPDNRSSVVWSLP-PGPAEDLQGLSDEEFLRELQRRLGERDPLGRVTLVSSRSAFPLSLRVAERYRR-  277 (387)
T ss_pred             EecCCCceEEEecCCCceeEEEECC-hhhHHHHhcCCHHHHHHHHHHhcCcccccceEEEccccccccccchhhhheec-
Confidence            6777665555555433333334322 23344566777777888888888777  33333332 2346666677778875 


Q ss_pred             CCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHhc
Q 012845          358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAME  433 (455)
Q Consensus       358 ~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~  433 (455)
                       +|++|+|||||.|+|+.|||+|+|++||..|+++|.+.........+|+.|++.|++++..++..|....+.+..
T Consensus       278 -~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~  352 (387)
T COG0654         278 -GRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPGADAAALAAYEARRRPRAEAIQKLSRALGRLFSA  352 (387)
T ss_pred             -CcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhcCccHHHHHHHHHhhhhHHHHHHHHHHHHhhhhcc
Confidence             899999999999999999999999999999999999987632228999999999999999999999966665553

>PRK08244 hypothetical protein; Provisional

Probab=100.00  E-value=1e-39  Score=335.81  Aligned_cols=339  Identities=27%  Similarity=0.383  Sum_probs=239.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ++||+||||||+||++|+.|+++|++|+||||.+.+...+++..++++++++|+++ |+++.+...+.+...+.   +. 
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~l-Gl~~~l~~~~~~~~~~~---~~-   76 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMR-GLLERFLEKGRKLPSGH---FA-   76 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhc-CcHHHHHhhcccccceE---Ee-
Confidence            48999999999999999999999999999999998888889999999999999999 99999987665543221   11 


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                      ...+.    .+... .+    ........+.|..+++.|.+.+.+.|+                   +++++++|++++.
T Consensus        77 ~~~~~----~~~~~-~~----~~~~~~~~i~q~~le~~L~~~~~~~gv-------------------~v~~~~~v~~i~~  128 (493)
T PRK08244         77 GLDTR----LDFSA-LD----TSSNYTLFLPQAETEKVLEEHARSLGV-------------------EIFRGAEVLAVRQ  128 (493)
T ss_pred             ccccc----CCccc-CC----CCCCcEEEecHHHHHHHHHHHHHHcCC-------------------eEEeCCEEEEEEE
Confidence            11110    01000 00    001123568899999999999988886                   8999999999998


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEEEE
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF  282 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (455)
                      +++++.+++... +|   ..++++|+||+|||.+|.+|+++++.+.+..+....+...+....       ..+...+..+
T Consensus       129 ~~~~v~v~~~~~-~g---~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~-------~~~~~~~~~~  197 (493)
T PRK08244        129 DGDGVEVVVRGP-DG---LRTLTSSYVVGADGAGSIVRKQAGIAFPGTDATFTAMLGDVVLKD-------PPPSSVLSLC  197 (493)
T ss_pred             cCCeEEEEEEeC-Cc---cEEEEeCEEEECCCCChHHHHhcCCCccCCCcceEEEEEEEEecC-------CCCcceeEEE
Confidence            888877766521 22   237899999999999999999999877666554443333322111       1122233334


Q ss_pred             ccCceEEEEeecCCCCeEEEEeecC--CCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEeceeeecccccCCCc
Q 012845          283 NTEAIGVLVAHDLKEGEFILQVPFY--PPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQ  360 (455)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (455)
                      .+++..++++.  .++.+.+.+...  .+.......+.+.+.+.+.+..+.............|+......+.|..  +|
T Consensus       198 ~~~g~~~~~P~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--gR  273 (493)
T PRK08244        198 TREGGVMIVPL--SGGIYRVLIIDPERPQVPKDEPVTLEELKTSLIRICGTDFGLNDPVWMSRFGNATRQAERYRS--GR  273 (493)
T ss_pred             eCCceEEEEEC--CCCeEEEEEEcCCcccccCCCCCCHHHHHHHHHHhhCCCCCcCCeeEEEecccceeeHhhhcc--Cc
Confidence            55554444444  444444333211  1111223345677777777766543322122222344455556667764  89


Q ss_pred             EEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHH
Q 012845          361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR  429 (455)
Q Consensus       361 vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~  429 (455)
                      |+|+|||||.++|+.|||+|+||+||..|+++|...+++.....+|+.|+++|+++...++..+.....
T Consensus       274 v~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~~~~~lL~~Ye~eR~~~~~~~~~~~~~~~~  342 (493)
T PRK08244        274 IFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKGWAPDWLLDSYHAERHPVGTALLRNTEVQTK  342 (493)
T ss_pred             EEEeecceeccCCccccccccchhhHHHHHHHHHHHHcCCCCchhhhhhHHHHHHHHHHHHHHhHHHHH
Confidence            999999999999999999999999999999999998877777899999999999999998887655433

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=100.00  E-value=3.4e-40  Score=327.75  Aligned_cols=333  Identities=17%  Similarity=0.213  Sum_probs=233.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC----CCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceE
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS----THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~----~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~  119 (455)
                      +||+||||||+|+++|+.|++.|++|+|||+.+...    ..++++.|+++++++|+++ |+++.+.....+.....   
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~~~---   77 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSI-DIWEELEKFVAEMQDIY---   77 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHC-CcHHHHHhhcCCCcEEE---
Confidence            689999999999999999999999999999975322    2468999999999999999 99999877665543321   


Q ss_pred             EeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEE
Q 012845          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (455)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~  199 (455)
                      +. +..+.....++..        ......+.+.|..|.+.|.+.+.+.+.                  +++++++++++
T Consensus        78 ~~-~~~g~~~~~~~~~--------~~~~~g~~v~r~~L~~~L~~~~~~~~~------------------v~~~~~~~v~~  130 (374)
T PRK06617         78 VV-DNKASEILDLRND--------ADAVLGYVVKNSDFKKILLSKITNNPL------------------ITLIDNNQYQE  130 (374)
T ss_pred             EE-ECCCceEEEecCC--------CCCCcEEEEEHHHHHHHHHHHHhcCCC------------------cEEECCCeEEE
Confidence            11 2233322222110        012224678999999999999988763                  38899999999


Q ss_pred             eeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEE
Q 012845          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF  279 (455)
Q Consensus       200 i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (455)
                      +..+++++.+++.   ++     ++++|+||+|||.+|.+|++++.......+ +..+.......       ....+..+
T Consensus       131 i~~~~~~v~v~~~---~~-----~~~adlvIgADG~~S~vR~~l~~~~~~~~y-~~~~~~~v~~~-------~~~~~~~~  194 (374)
T PRK06617        131 VISHNDYSIIKFD---DK-----QIKCNLLIICDGANSKVRSHYFANEIEKPY-QTALTFNIKHE-------KPHENCAM  194 (374)
T ss_pred             EEEcCCeEEEEEc---CC-----EEeeCEEEEeCCCCchhHHhcCCCcccccC-CeEEEEEEecc-------CCCCCEEE
Confidence            9888888777664   44     689999999999999999999766544444 44444333211       12333445


Q ss_pred             EEEccCceEEEEeecCCC-CeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEE-eeceEeceeeecccccC
Q 012845          280 FIFNTEAIGVLVAHDLKE-GEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVAEKFLCC  357 (455)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  357 (455)
                      ..+.+.+...+++.+... ....|..+.. ....+...+.+.+.+.+....+.......... ...|++.....+.|.. 
T Consensus       195 ~~~~~~g~~~~lPl~~~~~~~~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~-  272 (374)
T PRK06617        195 EHFLPLGPFALLPLKDQYASSVIWSTSSD-QAALIVNLPVEEVRFLTQRNAGNSLGKITIDSEISSFPLKARIANRYFH-  272 (374)
T ss_pred             EEecCCCCEEEeECCCCCeEEEEEeCCHH-HHHHHHcCCHHHHHHHHHHhhchhcCceeeccceeEEEeeeeeccceec-
Confidence            566666665555444322 1233433210 01112233345555555555543333332222 4456776666777764 


Q ss_pred             CCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHhc
Q 012845          358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAME  433 (455)
Q Consensus       358 ~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~  433 (455)
                       +||+|||||||.|+|+.|||+|+||+||.+|+++|..       ..+|+.|++.|++++..++..+..+.+.+++
T Consensus       273 -grv~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L~~-------~~~L~~Ye~~R~~~~~~~~~~t~~l~~~f~~  340 (374)
T PRK06617        273 -NRIVLIADTAHTVHPLAGQGLNQGIKDIEILSMIVSN-------NGTLQEYQKLRQEDNFIMYKLTDELNNIFSN  340 (374)
T ss_pred             -CCEEEEEcccccCCCCccccHHHHHHHHHHHHHHHcC-------cchHHHHHHHHhHHHHHHHHHHHHHHHHHcC
Confidence             9999999999999999999999999999999999841       3689999999999999999999988777663

>PRK08013 oxidoreductase; Provisional

Probab=100.00  E-value=8.6e-40  Score=327.74  Aligned_cols=343  Identities=18%  Similarity=0.187  Sum_probs=231.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC------CcccccChhHHHHHHhhhchHHHHHhc-CCCccc
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH------PQAHFINNRYALVFRKLDGLAEEIERS-QPPVDL  114 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~------~~~~~l~~~~~~~l~~~~gl~~~l~~~-~~~~~~  114 (455)
                      .++||+||||||+|+++|+.|++.|++|+||||.+.+...      .++..|+++++++|+++ |+++.+... ..+...
T Consensus         2 ~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~l-Gl~~~~~~~~~~~~~~   80 (400)
T PRK08013          2 QSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRL-GVWQDILARRASCYHG   80 (400)
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHc-CCchhhhhhcCccccE
Confidence            3589999999999999999999999999999999875421      25567899999999999 999998764 334332


Q ss_pred             ccceEEeecC-CCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhc-ccccccCCCcccccccccccceEE
Q 012845          115 WRKFIYCTSV-TGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREIL  192 (455)
Q Consensus       115 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~  192 (455)
                      ..   +.... .+....  +   ....   ..+.....+.|..|.+.|.+.+.+. ++                   +++
T Consensus        81 ~~---~~~~~~~~~~~~--~---~~~~---~~~~~~~~i~r~~l~~~L~~~~~~~~~v-------------------~i~  130 (400)
T PRK08013         81 ME---VWDKDSFGRIAF--D---DQSM---GYSHLGHIIENSVIHYALWQKAQQSSDI-------------------TLL  130 (400)
T ss_pred             EE---EEeCCCCceEEE--c---cccc---CCCccEEEEEhHHHHHHHHHHHhcCCCc-------------------EEE
Confidence            11   11110 111110  0   0000   1122235689999999999999886 44                   999


Q ss_pred             eccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCccccccc
Q 012845          193 MGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLN  272 (455)
Q Consensus       193 ~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (455)
                      ++++|++++.+++.+.+++.   +|.    ++++|+||+|||.+|.||++++.+..+..+.+..+...+....       
T Consensus       131 ~~~~v~~i~~~~~~v~v~~~---~g~----~i~a~lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~-------  196 (400)
T PRK08013        131 APAELQQVAWGENEAFLTLK---DGS----MLTARLVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTEE-------  196 (400)
T ss_pred             cCCeeEEEEecCCeEEEEEc---CCC----EEEeeEEEEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccC-------
Confidence            99999999988888777765   664    7899999999999999999999877766555555444332211       


Q ss_pred             CCCceEEEEEccCceEEEEeecCCC-CeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEE-eeceEeceee
Q 012845          273 ERPGMLFFIFNTEAIGVLVAHDLKE-GEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEV  350 (455)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~  350 (455)
                      ..+...+..+.+++...+++.+.+. ..+.|..+... .........+.+.+.+...++.......+.. ...|++....
T Consensus       197 ~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~~  275 (400)
T PRK08013        197 PHDAVARQVFHGDGILAFLPLSDPHLCSIVWSLSPEE-AQRMQQAPEEEFNRALAIAFDNRLGLCELESERQVFPLTGRY  275 (400)
T ss_pred             CCCCEEEEEEcCCCCEEEEECCCCCeEEEEEEcCHHH-HHHHHcCCHHHHHHHHHHHHhHhhCceEecCCccEEecceee
Confidence            1233344455555555554443322 23444332111 0111223444455554443332222222221 1245555556


Q ss_pred             ecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHc-CCCC--chhhhhHHHhhhHHHHHhHHhHHHH
Q 012845          351 AEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-DIAP--ASILNTYETERKPIAEFNTALSVQN  427 (455)
Q Consensus       351 ~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~-~~~~--~~al~~Y~~~r~~~~~~~~~~s~~~  427 (455)
                      .+.|..  +||+|+|||||.++|+.|||+|+||+||..|+++|.+.+. +.+.  ..+|+.|+++|++++..++..+...
T Consensus       276 ~~~~~~--grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~  353 (400)
T PRK08013        276 ARQFAA--HRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSRKHSAALMLAGMQGF  353 (400)
T ss_pred             cccccC--CcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677764  9999999999999999999999999999999999987653 2222  2479999999999999999887776


Q ss_pred             HHHHh
Q 012845          428 FRAAM  432 (455)
Q Consensus       428 ~~~~~  432 (455)
                      .+.++
T Consensus       354 ~~l~~  358 (400)
T PRK08013        354 RDLFA  358 (400)
T ss_pred             HHHHc
Confidence            66554

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=100.00  E-value=2e-38  Score=332.10  Aligned_cols=365  Identities=23%  Similarity=0.303  Sum_probs=247.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~-g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~  119 (455)
                      ..++||+||||||+||++|+.|++. |++|+||||.+.+...+++.+|+++++++|+++ |+++.+...+.+......+ 
T Consensus        30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~l-Gl~d~l~~~g~~~~~~~~~-  107 (634)
T PRK08294         30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAF-GFAERILKEAYWINETAFW-  107 (634)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhc-cchHHHHhhcccccceEEE-
Confidence            4578999999999999999999995 999999999988888889999999999999999 9999998776554321111 


Q ss_pred             EeecCC-CCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEE
Q 012845          120 YCTSVT-GPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV  198 (455)
Q Consensus       120 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~  198 (455)
                       ..... ...+..........  ....+.....++|..+++.|++.+.+.|..                 +.++++++|+
T Consensus       108 -~~~~~~~~~i~r~~~~~~~~--~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~-----------------v~v~~g~~v~  167 (634)
T PRK08294        108 -KPDPADPSTIVRTGRVQDTE--DGLSEFPHVIVNQARVHDYFLDVMRNSPTR-----------------LEPDYGREFV  167 (634)
T ss_pred             -cCCCccccceeccccccccC--CCCCCCccEeeCHHHHHHHHHHHHHhcCCc-----------------eEEEeCcEEE
Confidence             10000 01111111100000  001122235688999999999999887641                 3789999999


Q ss_pred             EeeecCC---ceEEEEEeccC-CcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEec-CCcccccccC
Q 012845          199 SVSATDQ---CINVIASFLKE-GKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLS-KDLGDYLLNE  273 (455)
Q Consensus       199 ~i~~~~~---~~~v~~~~~~~-g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  273 (455)
                      +++.+++   .+.+++...++ .++.++++++|+||+|||++|.||+++|+.+.+..+...+....... ...+     .
T Consensus       168 ~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~~~~p-----~  242 (634)
T PRK08294        168 DLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAVTDFP-----D  242 (634)
T ss_pred             EEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEccCCC-----C
Confidence            9987642   36676652211 02223589999999999999999999998888776666554444332 1111     1


Q ss_pred             CCceEEEEEccCceEEEEeecCCCCe-EEEEeecC--CC--CCCCCCCCHHHHHHHHHHhhCC-CCCCeeEEEeeceEec
Q 012845          274 RPGMLFFIFNTEAIGVLVAHDLKEGE-FILQVPFY--PP--QQNLEDFSPEICEKLIFKLVGW-ELSDIDVIDIKPWVMH  347 (455)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~--~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~  347 (455)
                      ......+...+.+...++  |...+. +.+.+...  .+  .......+.+.+.+.+++.++. ......+.....|.+.
T Consensus       243 ~~~~~~~~~~~~g~~~~~--P~~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~~~~~v~w~s~y~i~  320 (634)
T PRK08294        243 IRLKCAIQSASEGSILLI--PREGGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTLDVKEVAWWSVYEVG  320 (634)
T ss_pred             cceEEEEecCCCceEEEE--ECCCCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCCceeEEeEEeccccc
Confidence            111111122233333333  434442 22222211  11  1123455677788888776543 2222223334455565


Q ss_pred             eeeecccc--------cCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHH
Q 012845          348 AEVAEKFL--------CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEF  419 (455)
Q Consensus       348 ~~~~~~~~--------~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~  419 (455)
                      .+..+.|.        +..+||+|+|||||.++|..|||||++|+||..|+++|...+++....++|+.|+.+|+++++.
T Consensus       321 ~r~a~~f~~~~~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~a~~~lL~tYe~ERrp~a~~  400 (634)
T PRK08294        321 QRLTDRFDDVPAEEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGRSPPELLHTYSAERQAIAQE  400 (634)
T ss_pred             ceehhhcccccccccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence            66666662        1248999999999999999999999999999999999999888777889999999999999999


Q ss_pred             hHHhHHHHHHHHhcc
Q 012845          420 NTALSVQNFRAAMEV  434 (455)
Q Consensus       420 ~~~~s~~~~~~~~~~  434 (455)
                      +++.++...+.+...
T Consensus       401 li~~~~~~~~l~~~~  415 (634)
T PRK08294        401 LIDFDREWSTMMAAP  415 (634)
T ss_pred             HHHHHHHHHHHhccC
Confidence            999998887766543

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=100.00  E-value=2e-39  Score=325.87  Aligned_cols=346  Identities=20%  Similarity=0.243  Sum_probs=233.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC-CCC----CCCcccccChhHHHHHHhhhchHHHHHhc-CCCccc
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK-AFS----THPQAHFINNRYALVFRKLDGLAEEIERS-QPPVDL  114 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~-~~~----~~~~~~~l~~~~~~~l~~~~gl~~~l~~~-~~~~~~  114 (455)
                      |..+||+||||||+|+++|+.|+++|++|+|+|+.. .+.    ...++..|+++++++|+++ |+++++.+. ..+...
T Consensus         2 m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~~   80 (405)
T PRK08850          2 MQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNL-GAWQGIEARRAAPYIA   80 (405)
T ss_pred             CCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhC-CchhhhhhhhCCcccE
Confidence            346899999999999999999999999999999963 221    2346788999999999999 999999764 444432


Q ss_pred             ccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEec
Q 012845          115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG  194 (455)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~  194 (455)
                      +.   +. +..+  ......... .   ...+.....+.+..|.+.|++.+.+.+                  +++++++
T Consensus        81 ~~---~~-~~~~--~~~~~~~~~-~---~~~~~~g~~~~~~~l~~~L~~~~~~~~------------------~v~v~~~  132 (405)
T PRK08850         81 ME---VW-EQDS--FARIEFDAE-S---MAQPDLGHIVENRVIQLALLEQVQKQD------------------NVTLLMP  132 (405)
T ss_pred             EE---EE-eCCC--CceEEEecc-c---cCCCccEEEEEHHHHHHHHHHHHhcCC------------------CeEEEcC
Confidence            21   11 1111  111100000 0   001112345678889999999987753                  1489999


Q ss_pred             cEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCC
Q 012845          195 HECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNER  274 (455)
Q Consensus       195 ~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (455)
                      ++|++++.+++.+.+++.   +|+    ++++|+||+|||.+|.+|++++.+.....+.+..+...+....       ..
T Consensus       133 ~~v~~i~~~~~~~~v~~~---~g~----~~~a~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~-------~~  198 (405)
T PRK08850        133 ARCQSIAVGESEAWLTLD---NGQ----ALTAKLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVD-------PH  198 (405)
T ss_pred             CeeEEEEeeCCeEEEEEC---CCC----EEEeCEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccC-------CC
Confidence            999999888887777765   665    7899999999999999999998876655554444444432211       22


Q ss_pred             CceEEEEEccCceEEEEeecCCC-CeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEE-eeceEeceeeec
Q 012845          275 PGMLFFIFNTEAIGVLVAHDLKE-GEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVAE  352 (455)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~  352 (455)
                      ....+..+.+++...+++..... ..+.|..+... ...+...+.+.+.+.+.+.+.......++.. ...|++.....+
T Consensus       199 ~~~~~~~~~~~g~~~~lp~~~~~~~~~~w~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~  277 (405)
T PRK08850        199 NSVARQIFTPQGPLAFLPMSEPNMSSIVWSTEPLR-AEALLAMSDEQFNKALTAEFDNRLGLCEVVGERQAFPLKMRYAR  277 (405)
T ss_pred             CCEEEEEEcCCCceEEEECCCCCeEEEEEECCHHH-HHHHHcCCHHHHHHHHHHHHhhhhCcEEEcccccEEecceeecc
Confidence            33455566666655555443221 13334332111 1112233444455545544433222222221 224566556666


Q ss_pred             ccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHc-CC--CCchhhhhHHHhhhHHHHHhHHhHHHHHH
Q 012845          353 KFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-DI--APASILNTYETERKPIAEFNTALSVQNFR  429 (455)
Q Consensus       353 ~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~-~~--~~~~al~~Y~~~r~~~~~~~~~~s~~~~~  429 (455)
                      .|..  +||+|+|||||.++|+.|||+|+||+||..|+++|....+ +.  ....+|+.|++.|++++..++..+....+
T Consensus       278 ~~~~--~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~  355 (405)
T PRK08850        278 DFVR--ERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERWRKAEAAKMIAAMQGFRD  355 (405)
T ss_pred             cccc--CcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            7764  9999999999999999999999999999999999988763 22  24689999999999999999999987776


Q ss_pred             HHh
Q 012845          430 AAM  432 (455)
Q Consensus       430 ~~~  432 (455)
                      .++
T Consensus       356 ~~~  358 (405)
T PRK08850        356 LFS  358 (405)
T ss_pred             HHC
Confidence            655

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=100.00  E-value=2.3e-39  Score=323.06  Aligned_cols=342  Identities=17%  Similarity=0.228  Sum_probs=233.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC--C----CCcccccChhHHHHHHhhhchHHHHHhc-CCCcccc
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS--T----HPQAHFINNRYALVFRKLDGLAEEIERS-QPPVDLW  115 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~--~----~~~~~~l~~~~~~~l~~~~gl~~~l~~~-~~~~~~~  115 (455)
                      .+||+||||||+|+++|+.|++.|++|+|||+.+...  .    ..++..|+++++++|+++ |+++.+.+. ..+...+
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l-G~~~~~~~~~~~~~~~~   81 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESL-GAWSSIVAMRVCPYKRL   81 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHC-CCchhhhHhhCCccceE
Confidence            4799999999999999999999999999999875321  1    123458999999999999 999988653 3343222


Q ss_pred             cceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEecc
Q 012845          116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH  195 (455)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~  195 (455)
                      ..+    . .+.....+..   ....   .+...+.+.+..|...|.+.+.+.+.                  +++++++
T Consensus        82 ~~~----~-~~~~~~~~~~---~~~~---~~~~g~~i~~~~l~~~L~~~~~~~~~------------------i~i~~~~  132 (384)
T PRK08849         82 ETW----E-HPECRTRFHS---DELN---LDQLGYIVENRLIQLGLWQQFAQYPN------------------LTLMCPE  132 (384)
T ss_pred             EEE----e-CCCceEEecc---cccC---CCccEEEEEcHHHHHHHHHHHHhCCC------------------eEEECCC
Confidence            111    1 1100001110   0000   01112446667899999998877532                  4899999


Q ss_pred             EEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCC
Q 012845          196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP  275 (455)
Q Consensus       196 ~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (455)
                      +|++++.+++++.+++.   +|.    ++++|+||+|||.+|.+|++++.......+.+..+.......       ...+
T Consensus       133 ~v~~~~~~~~~~~v~~~---~g~----~~~~~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~-------~~~~  198 (384)
T PRK08849        133 KLADLEFSAEGNRVTLE---SGA----EIEAKWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVETE-------QPQQ  198 (384)
T ss_pred             ceeEEEEcCCeEEEEEC---CCC----EEEeeEEEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcC-------CCCC
Confidence            99999988888888776   665    889999999999999999999876666555554433332221       1123


Q ss_pred             ceEEEEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEeceeeecccc
Q 012845          276 GMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFL  355 (455)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (455)
                      ...+..+.+.+...+++.+.....++|...... .......+++.+.+.+.+.++......+......|++.....+.|.
T Consensus       199 ~~~~~~~~~~g~~~~~pl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  277 (384)
T PRK08849        199 DITWQQFTPSGPRSFLPLCGNQGSLVWYDSPKR-IKQLSAMNPEQLRSEILRHFPAELGEIKVLQHGSFPLTRRHAQQYV  277 (384)
T ss_pred             CEEEEEeCCCCCEEEeEcCCCceEEEEECCHHH-HHHHHcCCHHHHHHHHHHHhhhhhCcEEeccceEeeccccccchhc
Confidence            344445555444444555443334444322100 0112234556666666666555444444444456666666677777


Q ss_pred             cCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHhc
Q 012845          356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAME  433 (455)
Q Consensus       356 ~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~  433 (455)
                      .  +|++|+|||||.|+|+.|||+|+||+||..|+++|.+  .+.+...+|+.|++.|+++...++..+..+.+.++.
T Consensus       278 ~--grv~LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~--~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~  351 (384)
T PRK08849        278 K--NNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEK--QGVLNDASFARYERRRRPDNLLMQTGMDLFYKTFSN  351 (384)
T ss_pred             c--CCEEEEEcccccCCCCccchHhHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC
Confidence            5  9999999999999999999999999999999999864  233567899999999999999998888777665553

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=100.00  E-value=4e-39  Score=323.86  Aligned_cols=344  Identities=17%  Similarity=0.198  Sum_probs=231.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC--------CCCCcccccChhHHHHHHhhhchHHHHHhc-CCCcc
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF--------STHPQAHFINNRYALVFRKLDGLAEEIERS-QPPVD  113 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~--------~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~-~~~~~  113 (455)
                      .+||+||||||+|+++|+.|+++|++|+||||.+..        ....++..++++++++|+++ |+++.+.+. ..+..
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~   80 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERL-GAWDGIAARRASPYS   80 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHC-ChhhhhhHhhCccce
Confidence            479999999999999999999999999999998631        12345678999999999999 999998753 33432


Q ss_pred             cccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEe
Q 012845          114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILM  193 (455)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~  193 (455)
                      ..   .+ .+..+.....++.   ..   ...+.....+.+..|.+.|.+.+.+.|+                   ++++
T Consensus        81 ~~---~~-~~~~~~~~~~~~~---~~---~~~~~~g~~i~~~~l~~~L~~~~~~~gv-------------------~v~~  131 (405)
T PRK05714         81 EM---QV-WDGSGTGQIHFSA---AS---VHAEVLGHIVENRVVQDALLERLHDSDI-------------------GLLA  131 (405)
T ss_pred             eE---EE-EcCCCCceEEecc---cc---cCCCccEEEEEhHHHHHHHHHHHhcCCC-------------------EEEc
Confidence            21   11 1222211111110   00   0112223567888999999999988776                   8999


Q ss_pred             ccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccC
Q 012845          194 GHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNE  273 (455)
Q Consensus       194 ~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (455)
                      +++|++++.+++++.|++.   +|.    ++++|+||+|||.+|.+|++++.......+....+.......       ..
T Consensus       132 ~~~v~~i~~~~~~v~v~~~---~g~----~~~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~-------~~  197 (405)
T PRK05714        132 NARLEQMRRSGDDWLLTLA---DGR----QLRAPLVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCS-------EP  197 (405)
T ss_pred             CCEEEEEEEcCCeEEEEEC---CCC----EEEeCEEEEecCCCchhHHhcCCCcccccCCceEEEEEEEcC-------CC
Confidence            9999999988888777765   664    789999999999999999999877655555544433332211       12


Q ss_pred             CCceEEEEEccCceEEEEeecCCCC-eE---EEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCe-eEEEeeceEece
Q 012845          274 RPGMLFFIFNTEAIGVLVAHDLKEG-EF---ILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDI-DVIDIKPWVMHA  348 (455)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~  348 (455)
                      .....+..+.+.+...+++.+.... .+   .|..+... .......+.+.+.+.+.+.++...... .......|++..
T Consensus       198 ~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  276 (405)
T PRK05714        198 HRATAWQRFTDDGPLAFLPLERDGDEHWCSIVWSTTPEE-AERLMALDDDAFCAALERAFEGRLGEVLSADPRLCVPLRQ  276 (405)
T ss_pred             CCCEEEEEcCCCCCeEEeeCCCCCCCCeEEEEEECCHHH-HHHHHCCCHHHHHHHHHHHHHHHhCCceecCCccEEecce
Confidence            2334445556666555555432222 22   12221110 011222344444444544443322211 111223456655


Q ss_pred             eeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHc-CC--CCchhhhhHHHhhhHHHHHhHHhHH
Q 012845          349 EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-DI--APASILNTYETERKPIAEFNTALSV  425 (455)
Q Consensus       349 ~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~-~~--~~~~al~~Y~~~r~~~~~~~~~~s~  425 (455)
                      ...+.|..  +||+|||||||.|+|+.|||+|+||+||..|+++|.+... +.  ....+|+.|++.|++++..++..++
T Consensus       277 ~~~~~~~~--~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~~~  354 (405)
T PRK05714        277 RHAKRYVE--PGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPHNLALMAAME  354 (405)
T ss_pred             eehhhhcc--CCEEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56667764  9999999999999999999999999999999999987653 21  2358999999999999999999999


Q ss_pred             HHHHHHhc
Q 012845          426 QNFRAAME  433 (455)
Q Consensus       426 ~~~~~~~~  433 (455)
                      .+.+.++.
T Consensus       355 ~~~~~~~~  362 (405)
T PRK05714        355 GFERLFQA  362 (405)
T ss_pred             HHHHHHCC
Confidence            88776663

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=100.00  E-value=5.8e-38  Score=326.48  Aligned_cols=346  Identities=23%  Similarity=0.359  Sum_probs=239.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEe
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~  121 (455)
                      .++||+||||||+||++|+.|+++|++|+||||.+.+...+++..++++++++|+++ |+.+++.+.+.+......   .
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~l-Gl~~~l~~~~~~~~~~~~---~   97 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRL-GCGERMVDKGVSWNVGKV---F   97 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHc-CCcHHHHhhCceeeceeE---E
Confidence            568999999999999999999999999999999988777788999999999999999 999998876654322111   1


Q ss_pred             ecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEee
Q 012845          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (455)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~  201 (455)
                      .. .+ ....++.......    .......+.|..|++.|.+.+.+.+.                  ++++++++|++++
T Consensus        98 ~~-~~-~~~~~~~~~~~~~----~~~~~~~~~q~~le~~L~~~~~~~~~------------------v~v~~~~~v~~i~  153 (547)
T PRK08132         98 LR-DE-EVYRFDLLPEPGH----RRPAFINLQQYYVEGYLVERAQALPN------------------IDLRWKNKVTGLE  153 (547)
T ss_pred             eC-CC-eEEEecCCCCCCC----CCCceEecCHHHHHHHHHHHHHhCCC------------------cEEEeCCEEEEEE
Confidence            11 11 1111111110000    01123557899999999999987632                  3899999999999


Q ss_pred             ecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEEE
Q 012845          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI  281 (455)
Q Consensus       202 ~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (455)
                      .+++++.+++... ++   ..++++|+||+|||.+|.+|+.++..+.+..+...++.........      ......+++
T Consensus       154 ~~~~~v~v~~~~~-~g---~~~i~ad~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~------~~~~~~~~~  223 (547)
T PRK08132        154 QHDDGVTLTVETP-DG---PYTLEADWVIACDGARSPLREMLGLEFEGRTFEDRFLIADVKMKAD------FPTERWFWF  223 (547)
T ss_pred             EcCCEEEEEEECC-CC---cEEEEeCEEEECCCCCcHHHHHcCCCCCCccccceEEEEEEEecCC------CCCeeeEEE
Confidence            8888877766521 22   1368999999999999999999998877766555444433221110      011111221


Q ss_pred             E---ccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEeceeeecccccCC
Q 012845          282 F---NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY  358 (455)
Q Consensus       282 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (455)
                      .   .++...++  .+...+.+.+..............+.+.+.+.+++.++.. ...++.....|.+.....+.|..  
T Consensus       224 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~--  298 (547)
T PRK08132        224 DPPFHPGQSVLL--HRQPDNVWRIDFQLGWDADPEAEKKPENVIPRVRALLGED-VPFELEWVSVYTFQCRRMDRFRH--  298 (547)
T ss_pred             eccCCCCcEEEE--EeCCCCeEEEEEecCCCCCchhhcCHHHHHHHHHHHcCCC-CCeeEEEEEeeeeeeeeeccccc--
Confidence            1   12222222  2333344433322111111112234566777777777632 23344445566777777888875  


Q ss_pred             CcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHH
Q 012845          359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRA  430 (455)
Q Consensus       359 ~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~  430 (455)
                      +||+|+|||||.++|+.|||+|+||+||..|+++|...+++....++|+.|+++|+++++.+++.+......
T Consensus       299 gRV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~  370 (547)
T PRK08132        299 GRVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRGRAPDSLLDSYASEREFAADENIRNSTRSTDF  370 (547)
T ss_pred             ccEEEEecccccCCCcccccccchHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999888777778999999999999999998887665443

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=100.00  E-value=5.8e-39  Score=323.93  Aligned_cols=350  Identities=21%  Similarity=0.231  Sum_probs=230.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC--CCcccccChhHHHHHHhhhchHHHHHhcCCCcccccce
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST--HPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKF  118 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~--~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~  118 (455)
                      ..++||+||||||+|+++|+.|+++|++|+||||.+.+..  .++++.+++++++.|+++ |+++++...+.+...   .
T Consensus        16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~---~   91 (415)
T PRK07364         16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGI-GVWEKILPQIGKFRQ---I   91 (415)
T ss_pred             ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHC-ChhhhhHhhcCCccE---E
Confidence            4568999999999999999999999999999999987643  366788999999999999 999998876555422   1


Q ss_pred             EEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEE
Q 012845          119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV  198 (455)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~  198 (455)
                      .+. +..+.....+...   +..   .....+.+.+..|.+.|++.+.+.+.                  ++++++++|+
T Consensus        92 ~~~-~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~------------------v~i~~~~~v~  146 (415)
T PRK07364         92 RLS-DADYPGVVKFQPT---DLG---TEALGYVGEHQVLLEALQEFLQSCPN------------------ITWLCPAEVV  146 (415)
T ss_pred             EEE-eCCCCceeeeccc---cCC---CCccEEEEecHHHHHHHHHHHhcCCC------------------cEEEcCCeeE
Confidence            121 1122111111110   000   01111233344788889888877531                  3899999999


Q ss_pred             EeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceE
Q 012845          199 SVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML  278 (455)
Q Consensus       199 ~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (455)
                      +++.+++.+.+++.  +++.  ..++++|+||+|||.+|.+|+.++....+..+++..+........       ......
T Consensus       147 ~v~~~~~~~~v~~~--~~~~--~~~i~adlvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  215 (415)
T PRK07364        147 SVEYQQDAATVTLE--IEGK--QQTLQSKLVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEA-------PHNDIA  215 (415)
T ss_pred             EEEecCCeeEEEEc--cCCc--ceEEeeeEEEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccC-------CCCCEE
Confidence            99888887777665  1221  136899999999999999999998877666666655544433221       112222


Q ss_pred             EEEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEE-EeeceEeceeeecccccC
Q 012845          279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVI-DIKPWVMHAEVAEKFLCC  357 (455)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  357 (455)
                      +..+.+.+..++++.+.....+.|..+... .......+.+.+.+.+.+.++......... ....|++.....+.|.  
T Consensus       216 ~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  292 (415)
T PRK07364        216 YERFWPSGPFAILPLPGNRCQIVWTAPHAQ-AKALLALPEAEFLAELQQRYGDQLGKLELLGDRFLFPVQLMQSDRYV--  292 (415)
T ss_pred             EEEecCCCCeEEeECCCCCEEEEEECCHHH-HHHHHCCCHHHHHHHHHHHhhhhhcCceecCCCceecchhhhhhhhc--
Confidence            323334444444444333333433322111 011223344455555555443322222222 1223454444455665  


Q ss_pred             CCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHc-CCC--CchhhhhHHHhhhHHHHHhHHhHHHHHHHHhc
Q 012845          358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-DIA--PASILNTYETERKPIAEFNTALSVQNFRAAME  433 (455)
Q Consensus       358 ~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~-~~~--~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~  433 (455)
                      .+|++|||||||.++|+.|||+|+||+||..|+++|.+..+ +.+  ...+|+.|++.|+++...++..+....+.++.
T Consensus       293 ~~rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~  371 (415)
T PRK07364        293 QHRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWRKRENWLILGFTDLLDRLFSN  371 (415)
T ss_pred             CCcEEEEecccccCCCcccccHhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            49999999999999999999999999999999999988753 222  24899999999999999999988877766653

>PRK06834 hypothetical protein; Provisional

Probab=100.00  E-value=5.2e-38  Score=320.47  Aligned_cols=333  Identities=25%  Similarity=0.346  Sum_probs=236.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-CCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS-THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~-~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      ..+||+||||||+|+++|+.|+++|++|+||||.+.+. ...++..+++++++.|+++ |+++.+.+.+.+.... .+. 
T Consensus         2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~l-Gl~~~l~~~~~~~~~~-~~~-   78 (488)
T PRK06834          2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQR-GIADRFLAQGQVAQVT-GFA-   78 (488)
T ss_pred             CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHc-CcHHHHHhcCCccccc-eee-
Confidence            46899999999999999999999999999999998754 3456788999999999999 9999998755433210 010 


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                           ...+   +..   ...  ........+.+..+++.|.+.+.+.|+                   +++++++|+++
T Consensus        79 -----~~~~---~~~---~~~--~~~~~~~~i~q~~le~~L~~~l~~~gv-------------------~i~~~~~v~~v  126 (488)
T PRK06834         79 -----ATRL---DIS---DFP--TRHNYGLALWQNHIERILAEWVGELGV-------------------PIYRGREVTGF  126 (488)
T ss_pred             -----eEec---ccc---cCC--CCCCccccccHHHHHHHHHHHHHhCCC-------------------EEEcCCEEEEE
Confidence                 0000   000   000  001123457888999999999998886                   99999999999


Q ss_pred             eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEE
Q 012845          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF  280 (455)
Q Consensus       201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (455)
                      +.+++++.+++.   +|.    ++++|+||+|||.+|.+|+++++.+.+..+.+.++..........        . +..
T Consensus       127 ~~~~~~v~v~~~---~g~----~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~dv~~~~~~--------~-~~~  190 (488)
T PRK06834        127 AQDDTGVDVELS---DGR----TLRAQYLVGCDGGRSLVRKAAGIDFPGWDPTTSYLIAEVEMTEEP--------E-WGV  190 (488)
T ss_pred             EEcCCeEEEEEC---CCC----EEEeCEEEEecCCCCCcHhhcCCCCCCCCcceEEEEEEEEecCCC--------C-cce
Confidence            998888777664   553    789999999999999999999998888777666555444322111        0 111


Q ss_pred             EEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEeceeeecccccCCCc
Q 012845          281 IFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQ  360 (455)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (455)
                      .+.+.+...+.... ..+.+.+.+....+ ......+.+.+.+.+.+.++.............|+......+.|..  +|
T Consensus       191 ~~~~~g~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~r~a~~~~~--gR  266 (488)
T PRK06834        191 HRDALGIHAFGRLE-DEGPVRVMVTEKQV-GATGEPTLDDLREALIAVYGTDYGIHSPTWISRFTDMARQAASYRD--GR  266 (488)
T ss_pred             eeCCCceEEEeccC-CCCeEEEEEecCCC-CCCCCCCHHHHHHHHHHhhCCCCccccceeEEeccccceecccccC--Cc
Confidence            12222222222221 13333332222111 2223456667777777766544332223334456666677788875  99


Q ss_pred             EEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHH
Q 012845          361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR  429 (455)
Q Consensus       361 vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~  429 (455)
                      |+|+|||||.++|+.|||||++|+||..|+++|...+++.....+|+.|+++|++....++..+..+..
T Consensus       267 V~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~g~~~~~lLd~Ye~eRrp~~~~~~~~t~~~~~  335 (488)
T PRK06834        267 VLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKGTSPESLLDTYHAERHPVAARVLRNTMAQVA  335 (488)
T ss_pred             EEEEeeccccCCccccccccccHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998887778899999999999999999988766553

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=100.00  E-value=1.5e-38  Score=321.89  Aligned_cols=346  Identities=21%  Similarity=0.260  Sum_probs=237.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHh----CCCCEEEEcCCCCCCC------------CCcccccChhHHHHHHhhhchHHHHHh
Q 012845           44 VPVLIVGAGPVGLVLSILLTK----LGIKCSVLEKNKAFST------------HPQAHFINNRYALVFRKLDGLAEEIER  107 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~----~g~~V~l~Er~~~~~~------------~~~~~~l~~~~~~~l~~~~gl~~~l~~  107 (455)
                      +||+||||||+|+++|+.|++    .|++|+||||.+.+..            ..++..|+++++++|+.+ |+++.+..
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~l-G~~~~l~~   79 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKI-GAWDHIQS   79 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHc-Cchhhhhh
Confidence            699999999999999999999    8999999999654432            246899999999999999 99999976


Q ss_pred             cC-CCcccccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCccccccccc
Q 012845          108 SQ-PPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLL  186 (455)
Q Consensus       108 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~  186 (455)
                      .. .+...+.   +. +..+.....++...       ..+.....+++..|.+.|.+.+.+.+.                
T Consensus        80 ~~~~~~~~~~---~~-~~~~~~~~~~~~~~-------~~~~~~~~i~~~~l~~~L~~~~~~~~~----------------  132 (437)
T TIGR01989        80 DRIQPFGRMQ---VW-DGCSLALIRFDRDN-------GKEDMACIIENDNIQNSLYNRLQEYNG----------------  132 (437)
T ss_pred             hcCCceeeEE---Ee-cCCCCceEEeecCC-------CCCceEEEEEHHHHHHHHHHHHHhCCC----------------
Confidence            43 3332211   11 11221111111100       012224568899999999999988651                


Q ss_pred             ccceEEeccEEEEeeec-------CCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEE
Q 012845          187 QGREILMGHECVSVSAT-------DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSV  259 (455)
Q Consensus       187 ~~~~i~~~~~v~~i~~~-------~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~  259 (455)
                      ++++++++++|++++..       ++++.+++.   +|+    ++++|+||+|||.+|.+|+++++...+..|.+..+..
T Consensus       133 ~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~---~g~----~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~  205 (437)
T TIGR01989       133 DNVKILNPARLISVTIPSKYPNDNSNWVHITLS---DGQ----VLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVA  205 (437)
T ss_pred             CCeEEecCCeeEEEEeccccccCCCCceEEEEc---CCC----EEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEE
Confidence            01399999999999752       345666655   664    7899999999999999999999988888777766555


Q ss_pred             EEecCCcccccccCCCceEEEEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhC---------
Q 012845          260 HFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVG---------  330 (455)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------  330 (455)
                      ......      ...++..+..|.+++...+++.+....++.|..+.. ....+...+++.+.+.+.+.++         
T Consensus       206 ~v~~~~------~~~~~~~~~~f~~~g~~~~lPl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~  278 (437)
T TIGR01989       206 TLKLEE------ATENDVAWQRFLPTGPIALLPLPDNNSTLVWSTSPE-EALRLLSLPPEDFVDALNAAFDLGYSDHPYS  278 (437)
T ss_pred             EEEccc------CCCCCeEEEEECCCCCEEEeECCCCCEEEEEeCCHH-HHHHHHcCCHHHHHHHHHHHhcccccccccc
Confidence            443221      123445556667777666665543333444443211 1112223455555555544330         


Q ss_pred             ---------------CCC-C----------CeeEE--EeeceEeceeeecccccCCCcEEEEcCccccCCCCcCccchhh
Q 012845          331 ---------------WEL-S----------DIDVI--DIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTG  382 (455)
Q Consensus       331 ---------------~~~-~----------~~~~~--~~~~~~~~~~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~A  382 (455)
                                     +.. +          ...+.  ....|++.....+.|..  +||+|+|||||.++|+.|||+|+|
T Consensus       279 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~rv~l~GDAAH~~~P~~GqG~n~~  356 (437)
T TIGR01989       279 YLLDYAMEKLNEDIGFRTEGSKSCFQVPPRVIGVVDKSRAAFPLGLGHADEYVT--KRVALVGDAAHRVHPLAGQGVNLG  356 (437)
T ss_pred             cccccccccccccccccccccccccccCchhheeecccceeEEecccchhhccC--CCEEEEchhhcCCCCChhhhHHHH
Confidence                           000 0          00111  11345565556667764  999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHcCC-C--CchhhhhHHHhhhHHHHHhHHhHHHHHHHHhc
Q 012845          383 VQDAHNLAWKIASVLKDI-A--PASILNTYETERKPIAEFNTALSVQNFRAAME  433 (455)
Q Consensus       383 l~da~~La~~L~~~~~~~-~--~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~  433 (455)
                      |+||..|+++|.+..+.. +  ...+|+.|++.|+++++.++..+....+.+..
T Consensus       357 l~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~v~~~t~~l~~l~~~  410 (437)
T TIGR01989       357 FGDVASLVKALAEAVSVGADIGSISSLKPYERERYAKNVVLLGLVDKLHKLYAT  410 (437)
T ss_pred             HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999876432 2  24799999999999999999999988777664

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK07045 putative monooxygenase; Reviewed

Probab=100.00  E-value=2.6e-38  Score=316.20  Aligned_cols=347  Identities=20%  Similarity=0.216  Sum_probs=223.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      +.++||+||||||+|+++|+.|++.|++|+||||.+.+...+++..|+++++++|+++ |+++.+.+.+....  ..+..
T Consensus         3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~l-Gl~~~~~~~~~~~~--~~~~~   79 (388)
T PRK07045          3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAM-GLLDDVFAAGGLRR--DAMRL   79 (388)
T ss_pred             CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHc-CCHHHHHhcccccc--cceEE
Confidence            4678999999999999999999999999999999998876667778999999999999 99999887553221  11111


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                        ..++..+...+......      ......+.|..|.+.|.+.+.+.+                  +++++++++|+++
T Consensus        80 --~~~g~~~~~~~~~~~~~------~g~~~~i~r~~l~~~L~~~~~~~~------------------gv~i~~~~~v~~i  133 (388)
T PRK07045         80 --YHDKELIASLDYRSASA------LGYFILIPCEQLRRLLLAKLDGLP------------------NVRLRFETSIERI  133 (388)
T ss_pred             --ecCCcEEEEecCCcccc------CCceEEccHHHHHHHHHHHHhcCC------------------CeeEEeCCEEEEE
Confidence              12344333222211000      111245789999999999986543                  1499999999999


Q ss_pred             eecCCce--EEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhc-CCCccCCcccceeEEEEEecCCcccccccCCCce
Q 012845          201 SATDQCI--NVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLV-GIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM  277 (455)
Q Consensus       201 ~~~~~~~--~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (455)
                      +.++++.  .+++.   +|+    ++.+|+||+|||.+|.+|+++ +.......+....+.........       .+..
T Consensus       134 ~~~~~~~~~~v~~~---~g~----~~~~~~vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  199 (388)
T PRK07045        134 ERDADGTVTSVTLS---DGE----RVAPTVLVGADGARSMIRDDVLRMPAERVPYATPMAFGTIALTDS-------VREC  199 (388)
T ss_pred             EECCCCcEEEEEeC---CCC----EEECCEEEECCCCChHHHHHhhCCCcccCCCCcceeEEEEeccCC-------cccc
Confidence            9876664  34443   554    789999999999999999975 44333222322222222211110       0111


Q ss_pred             EEEEEcc-CceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCC-eeEE-Eee---ceEeceeee
Q 012845          278 LFFIFNT-EAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSD-IDVI-DIK---PWVMHAEVA  351 (455)
Q Consensus       278 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~-~~~---~~~~~~~~~  351 (455)
                      ....+.+ .+..++++.......+.+..+.........+...+.+.+.+.+.++..... .... ...   .+++.....
T Consensus       200 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (388)
T PRK07045        200 NRLYVDSNQGLAYFYPIGDQATRLVVSFPADEMQGYLADTTRTKLLARLNEFVGDESADAMAAIGAGTAFPLIPLGRMNL  279 (388)
T ss_pred             ceEEEcCCCceEEEEEcCCCcEEEEEEeccccchhccCCCCHHHHHHHHhhhcCccchHHHhccCcccccceeecCcccc
Confidence            1122223 333333333322222333333222222233344555556566554322111 1101 111   123333344


Q ss_pred             cccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCC-CCchhhhhHHHhhhHHHHHhHHhHHHHHHH
Q 012845          352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI-APASILNTYETERKPIAEFNTALSVQNFRA  430 (455)
Q Consensus       352 ~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~-~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~  430 (455)
                      +.|.  .+||+|||||||.|+|++|||+|+||+||..|+++|.+.+.+. ...++|+.|++.|++++..++..++..-..
T Consensus       280 ~~~~--~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~  357 (388)
T PRK07045        280 DRYH--KRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQIALADALERFERIRRPVNEAVISYGHALATT  357 (388)
T ss_pred             cccc--CCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhhhHHHHHHhhhHHHhhh
Confidence            5665  4999999999999999999999999999999999998865432 456899999999999999999998866665


Q ss_pred             Hh
Q 012845          431 AM  432 (455)
Q Consensus       431 ~~  432 (455)
                      ++
T Consensus       358 ~~  359 (388)
T PRK07045        358 YH  359 (388)
T ss_pred             cc
Confidence            54

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=100.00  E-value=1.1e-38  Score=319.01  Aligned_cols=349  Identities=19%  Similarity=0.298  Sum_probs=238.0

Q ss_pred             cCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccce
Q 012845           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKF  118 (455)
Q Consensus        39 ~~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~  118 (455)
                      |++..+||+||||||+|+++|+.|+++|++|+||||.+.+.. .+++.+.++++++|+++ |+++.+.....+....   
T Consensus         3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~-~r~~~l~~~s~~~l~~l-gl~~~~~~~~~~~~~~---   77 (388)
T PRK07494          3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYAD-LRTTALLGPSIRFLERL-GLWARLAPHAAPLQSM---   77 (388)
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCC-cchhhCcHHHHHHHHHh-CchhhhHhhcceeeEE---
Confidence            446678999999999999999999999999999999876533 56677888999999999 9999997766554322   


Q ss_pred             EEeecCCCCcccccc-CCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEE
Q 012845          119 IYCTSVTGPILGSVD-HMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHEC  197 (455)
Q Consensus       119 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v  197 (455)
                      .+. +..+....... .....+.   ......+.+.+..+.+.|.+.+.+.+.                   ..+++++|
T Consensus        78 ~~~-~~~g~~~~~~~~~~~~~~~---~~~~~g~~i~~~~l~~~L~~~~~~~~~-------------------~~~~~~~v  134 (388)
T PRK07494         78 RIV-DATGRLIRAPEVRFRAAEI---GEDAFGYNIPNWLLNRALEARVAELPN-------------------ITRFGDEA  134 (388)
T ss_pred             EEE-eCCCCCCCCceEEEcHHhc---CCCccEEEeEhHHHHHHHHHHHhcCCC-------------------cEEECCee
Confidence            121 12232221100 0000000   011123568899999999999988764                   34889999


Q ss_pred             EEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCce
Q 012845          198 VSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM  277 (455)
Q Consensus       198 ~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (455)
                      ++++.+++++.+++.   +|.    ++++|+||+|||.+|.+|+.++.+.....+.+..+...+...       ......
T Consensus       135 ~~i~~~~~~~~v~~~---~g~----~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~-------~~~~~~  200 (388)
T PRK07494        135 ESVRPREDEVTVTLA---DGT----TLSARLVVGADGRNSPVREAAGIGVRTWSYPQKALVLNFTHS-------RPHQNV  200 (388)
T ss_pred             EEEEEcCCeEEEEEC---CCC----EEEEeEEEEecCCCchhHHhcCCCceecCCCCEEEEEEEecc-------CCCCCE
Confidence            999988888877765   554    789999999999999999999887666655555554443321       112233


Q ss_pred             EEEEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEE-EeeceEeceeeeccccc
Q 012845          278 LFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVI-DIKPWVMHAEVAEKFLC  356 (455)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  356 (455)
                      .+.++.+.+...+++.+.....+.|...... .......+.+.+.+.+.+.+.......... ....|++.....+.|..
T Consensus       201 ~~~~~~~~g~~~~~Pl~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~  279 (388)
T PRK07494        201 STEFHTEGGPFTQVPLPGRRSSLVWVVRPAE-AERLLALSDAALSAAIEERMQSMLGKLTLEPGRQAWPLSGQVAHRFAA  279 (388)
T ss_pred             EEEEeCCCCcEEEEECCCCcEEEEEECCHHH-HHHHHcCCHHHHHHHHHHHHhhhcCCeEEccCCcEeechHHHHHhhcc
Confidence            3444556555555554433323333322111 111234455666666666544333332222 22346665555566664


Q ss_pred             CCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHh
Q 012845          357 CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAM  432 (455)
Q Consensus       357 ~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~  432 (455)
                        +||+|+|||||.++|+.|||+|+||+||..|+++|.+...+....++|+.|++.|++++..++..+....+.+.
T Consensus       280 --~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~  353 (388)
T PRK07494        280 --GRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRPEDPGSAAVLAAYDRARRPDILSRTASVDLLNRSLL  353 (388)
T ss_pred             --CceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence              99999999999999999999999999999999999874334345789999999999999888887776666554

>PRK07190 hypothetical protein; Provisional

Probab=100.00  E-value=1.8e-37  Score=316.14  Aligned_cols=343  Identities=24%  Similarity=0.329  Sum_probs=243.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      +..+||+||||||+||++|+.|+++|++|+||||.+.+...+++..++++++++|+.+ |+++.+...+.+......   
T Consensus         3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~l-Gl~~~l~~~~~~~~~~~~---   78 (487)
T PRK07190          3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELV-DLFDELYPLGKPCNTSSV---   78 (487)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhc-ChHHHHHhhCccceeEEE---
Confidence            4568999999999999999999999999999999998877888999999999999999 999998776655432111   


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                        ...+..+........ ...... ......+.+..+++.|.+.+.+.|+                   +++++++|+++
T Consensus        79 --~~~g~~i~~~~~~~~-~~~~~~-~~~~~~~~q~~le~~L~~~~~~~Gv-------------------~v~~~~~v~~l  135 (487)
T PRK07190         79 --WANGKFISRQSSWWE-ELEGCL-HKHFLMLGQSYVEKLLDDKLKEAGA-------------------AVKRNTSVVNI  135 (487)
T ss_pred             --ecCCceEeeccccCc-cCCcCC-CCceEecCHHHHHHHHHHHHHHCCC-------------------EEEeCCEEEEE
Confidence              111222111100000 000000 1123457889999999999999887                   99999999999


Q ss_pred             eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEe-cCCcccccccCCCceEE
Q 012845          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFL-SKDLGDYLLNERPGMLF  279 (455)
Q Consensus       201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  279 (455)
                      +.+++++.+.+.   +|.    ++++|+||+|||.+|.+|+++|+++.+......+...... ..+.+.     .+....
T Consensus       136 ~~~~~~v~v~~~---~g~----~v~a~~vVgADG~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~~-----~~~~~~  203 (487)
T PRK07190        136 ELNQAGCLTTLS---NGE----RIQSRYVIGADGSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFPK-----VPEIIV  203 (487)
T ss_pred             EEcCCeeEEEEC---CCc----EEEeCEEEECCCCCHHHHHHcCCCccccccceeEEEEEEEEccCCCC-----CcceEE
Confidence            998888777665   553    7899999999999999999999888766544444333221 111110     111222


Q ss_pred             EEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhh-CCCCCCeeEEEeeceEeceeeecccccCC
Q 012845          280 FIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLV-GWELSDIDVIDIKPWVMHAEVAEKFLCCY  358 (455)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (455)
                       +..+.+...+++.  ..+...+.+..     ....++.+.+.+.+.+.+ +......++.....|++..+..+.|.. .
T Consensus       204 -~~~~~g~~~~~p~--~~~~~r~~~~~-----~~~~~t~~~~~~~l~~~~~~~~~~~~~~~w~s~~~~~~r~a~~~r~-~  274 (487)
T PRK07190        204 -FQAETSDVAWIPR--EGEIDRFYVRM-----DTKDFTLEQAIAKINHAMQPHRLGFKEIVWFSQFSVKESVAEHFFI-Q  274 (487)
T ss_pred             -EEcCCCCEEEEEC--CCCEEEEEEEc-----CCCCCCHHHHHHHHHHhcCCCCCceEEEEEEEEeeeCcEehhhcCc-C
Confidence             2233333333333  22222222211     123566777777776644 333333344455678888888888852 3


Q ss_pred             CcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHH
Q 012845          359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA  431 (455)
Q Consensus       359 ~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~  431 (455)
                      +||+|+|||||.++|..|||||++|+||..|+++|...+++......|+.|+++|++..+.++..++.+.+..
T Consensus       275 gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g~a~~~lLdtY~~eR~p~a~~vl~~t~~~~~~~  347 (487)
T PRK07190        275 DRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHHGASPELLQSYEAERKPVAQGVIETSGELVRST  347 (487)
T ss_pred             CcEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999998887777889999999999999999999998776644

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=100.00  E-value=5.8e-38  Score=313.82  Aligned_cols=343  Identities=21%  Similarity=0.259  Sum_probs=225.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC--CCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF--STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~--~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      ++||+||||||+|+++|+.|++.|++|+||||.+.+  ....++..+.++++++|+++ |+++.+...+.+....   .+
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~l-Gl~~~l~~~~~~~~~~---~~   77 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREA-GVGERMDREGLVHDGI---EL   77 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHc-CChHHHHhcCCccCcE---EE
Confidence            579999999999999999999999999999999864  23345667999999999999 9999998776654322   22


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                      ..  .+.. ...+....      ........+.|..+.+.|++.+.+.|+                   +++++++++++
T Consensus        78 ~~--~g~~-~~~~~~~~------~~~~~~~~~~~~~l~~~Ll~~a~~~gv-------------------~v~~~~~v~~i  129 (392)
T PRK08243         78 RF--DGRR-HRIDLTEL------TGGRAVTVYGQTEVTRDLMAARLAAGG-------------------PIRFEASDVAL  129 (392)
T ss_pred             EE--CCEE-EEeccccc------cCCceEEEeCcHHHHHHHHHHHHhCCC-------------------eEEEeeeEEEE
Confidence            21  2221 11111100      001123345688888899888887776                   89999999999


Q ss_pred             ee-cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCC---cccceeEEEEEecCCcccccccCCCc
Q 012845          201 SA-TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGE---KDLQKLVSVHFLSKDLGDYLLNERPG  276 (455)
Q Consensus       201 ~~-~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (455)
                      +. +++.+.|++.  .+|+  +.++++|+||+|||.+|.+|++++......   .+...+..  ... +..     ....
T Consensus       130 ~~~~~~~~~V~~~--~~G~--~~~i~ad~vVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~--~~~-~~~-----~~~~  197 (392)
T PRK08243        130 HDFDSDRPYVTYE--KDGE--EHRLDCDFIAGCDGFHGVSRASIPAGALRTFERVYPFGWLG--ILA-EAP-----PVSD  197 (392)
T ss_pred             EecCCCceEEEEE--cCCe--EEEEEeCEEEECCCCCCchhhhcCcchhhceecccCceEEE--EeC-CCC-----CCCC
Confidence            86 5566666653  2443  347899999999999999999996542110   00011111  111 100     1111


Q ss_pred             eEEEEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCC----CCCeeEEEeeceEeceeeec
Q 012845          277 MLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWE----LSDIDVIDIKPWVMHAEVAE  352 (455)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~  352 (455)
                      ..++...+.++.++...+.....+.+..+.   ......++.+...+.+.+.+...    ...........+++.....+
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (392)
T PRK08243        198 ELIYANHERGFALCSMRSPTRSRYYLQCPL---DDKVEDWSDERFWDELRRRLPPEDAERLVTGPSIEKSIAPLRSFVAE  274 (392)
T ss_pred             ceEEeeCCCceEEEecCCCCcEEEEEEecC---CCCcccCChhHHHHHHHHhcCcccccccccCccccccceeeeeceec
Confidence            122222333333332222221233333321   22344556655666666654431    11111222233445445556


Q ss_pred             ccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHh
Q 012845          353 KFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAM  432 (455)
Q Consensus       353 ~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~  432 (455)
                      +|..  +||+|||||||.++|++|||+|+||+||..|+++|.+.+++ +..++|+.|++.|++++..++..|+..-..++
T Consensus       275 ~~~~--grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~-~~~~~L~~Ye~~r~~r~~~~~~~~~~~~~~~~  351 (392)
T PRK08243        275 PMQY--GRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYRE-GDTALLDAYSATALRRVWKAERFSWWMTSMLH  351 (392)
T ss_pred             ccee--CCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6654  89999999999999999999999999999999999987654 35789999999999999999999998888877


Q ss_pred             ccc
Q 012845          433 EVP  435 (455)
Q Consensus       433 ~~~  435 (455)
                      ..+
T Consensus       352 ~~~  354 (392)
T PRK08243        352 RFP  354 (392)
T ss_pred             cCC
Confidence            654

>PRK06475 salicylate hydroxylase; Provisional

Probab=100.00  E-value=2.3e-38  Score=317.52  Aligned_cols=342  Identities=18%  Similarity=0.199  Sum_probs=215.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEeec
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~~  123 (455)
                      .+|+||||||+||++|+.|+++|++|+||||.+.+...++++.|+++++++|+++ |+++.+...+.+..   .+.+...
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~-Gl~~~l~~~~~~~~---~~~~~~g   78 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERL-GVADRLSGTGVTPK---ALYLMDG   78 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHC-CChHHHhhcccCcc---eEEEecC
Confidence            6899999999999999999999999999999988888889999999999999999 99999987655432   1111111


Q ss_pred             CCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhc-ccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                      ..+......+..   .............+.|..|.+.|.+.+.+. ++                   +++++++|++++.
T Consensus        79 ~~~~~~~~~~~~---~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i-------------------~v~~~~~v~~~~~  136 (400)
T PRK06475         79 RKARPLLAMQLG---DLARKRWHHPYIVCHRADLQSALLDACRNNPGI-------------------EIKLGAEMTSQRQ  136 (400)
T ss_pred             CCcceEEEecch---hhhhhcCCCCceeECHHHHHHHHHHHHHhcCCc-------------------EEEECCEEEEEec
Confidence            111111110000   000000011234679999999999998764 44                   8999999999998


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeE-EEEEecCCcccccc--cCCCceEE
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLV-SVHFLSKDLGDYLL--NERPGMLF  279 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~  279 (455)
                      +++++.+++...++++    ++++|+||+|||.+|.+|++++...  ..+..... ..............  ....+...
T Consensus       137 ~~~~v~v~~~~~~~~~----~~~adlvIgADG~~S~vR~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (400)
T PRK06475        137 TGNSITATIIRTNSVE----TVSAAYLIACDGVWSMLRAKAGFSK--ARFSGHIAWRTTLAADALPASFLSAMPEHKAVS  210 (400)
T ss_pred             CCCceEEEEEeCCCCc----EEecCEEEECCCccHhHHhhcCCCC--CCcCCceEEEEEeehhhcchhhhhhcccCCceE
Confidence            8888777765222332    7899999999999999999986422  22212211 11111111111111  01223334


Q ss_pred             EEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCC----CHHHHHHHHHHhhCCCCCCeeE----EEeeceEeceeee
Q 012845          280 FIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDF----SPEICEKLIFKLVGWELSDIDV----IDIKPWVMHAEVA  351 (455)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~  351 (455)
                      .++.++.....+  |...+...+.+....+......|    +.+.+.+.+.   +|......+    .....|++.....
T Consensus       211 ~~~g~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~i~~~~~~~~~~l~~~~~  285 (400)
T PRK06475        211 AWLGNKAHFIAY--PVKGGKFFNFVAITGGENPGEVWSKTGDKAHLKSIYA---DWNKPVLQILAAIDEWTYWPLFEMAD  285 (400)
T ss_pred             EEEcCCCEEEEE--EccCCcEEEEEEEEcCCCCcccCCCCCCHHHHHHHhc---CCChHHHHHHhcCCceeECcCcccCC
Confidence            444555544444  33333322222211111111112    1222222221   221111111    1112344443333


Q ss_pred             cccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHH
Q 012845          352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQN  427 (455)
Q Consensus       352 ~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~  427 (455)
                      .++. ..+|++|||||||.|+|+.|||+|+||+||.+|+++|..    .+...+|+.|++.|+++++.++..++..
T Consensus       286 ~~~~-~~grvvLiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~----~~~~~aL~~Ye~~R~~r~~~~~~~s~~~  356 (400)
T PRK06475        286 AQFV-GPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEALDS----DDQSAGLKRFDSVRKERIAAVAKRGQLN  356 (400)
T ss_pred             Ccce-ecCCEEEEecccccCCchhhhhHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3432 248999999999999999999999999999999999963    2456899999999999999999999633

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=100.00  E-value=6.7e-38  Score=315.00  Aligned_cols=345  Identities=20%  Similarity=0.245  Sum_probs=230.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCCC--CCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceE
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFS--THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g--~~V~l~Er~~~~~--~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~  119 (455)
                      +||+||||||+|+++|+.|+++|  ++|+||||.+...  ..+++..|+++++++|+++ |+++.+...+.+....   .
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~l-Gl~~~~~~~~~~~~~~---~   77 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEAL-GVWDEIAPEAQPITDM---V   77 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHC-CChhhhhhhcCcccEE---E
Confidence            79999999999999999999995  9999999987643  3468999999999999999 9999998766655322   1


Q ss_pred             EeecCCCCcccc--ccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEE
Q 012845          120 YCTSVTGPILGS--VDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHEC  197 (455)
Q Consensus       120 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v  197 (455)
                      +.....+.....  .......    .........++|..|.+.|.+.+.+.|+                   +++++++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~r~~l~~~L~~~~~~~gv-------------------~v~~~~~v  134 (403)
T PRK07333         78 ITDSRTSDPVRPVFLTFEGEV----EPGEPFAHMVENRVLINALRKRAEALGI-------------------DLREATSV  134 (403)
T ss_pred             EEeCCCCCCCccceEEecccc----cCCCccEEEeEhHHHHHHHHHHHHhCCC-------------------EEEcCCEE
Confidence            111111111100  0000000    0011123467999999999999998886                   99999999


Q ss_pred             EEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCce
Q 012845          198 VSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM  277 (455)
Q Consensus       198 ~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (455)
                      ++++.+++.+.+++.   +|.    ++.+|+||+|||.+|.+|+.++.......+....+........       .....
T Consensus       135 ~~i~~~~~~v~v~~~---~g~----~~~ad~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~  200 (403)
T PRK07333        135 TDFETRDEGVTVTLS---DGS----VLEARLLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHER-------PHGGR  200 (403)
T ss_pred             EEEEEcCCEEEEEEC---CCC----EEEeCEEEEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCC-------CCCCE
Confidence            999988887777665   554    7899999999999999999998765544444443333222111       11223


Q ss_pred             EEEEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEE-eeceEeceeeeccccc
Q 012845          278 LFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVAEKFLC  356 (455)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  356 (455)
                      ....+.+++..++++.+.....+.|..+... .........+.+.+.+.+.++.......... ...|+......+.|..
T Consensus       201 ~~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (403)
T PRK07333        201 AEEHFLPAGPFAILPLKGNRSSLVWTERTAD-AERLVALDDLVFEAELEQRFGHRLGELKVLGKRRAFPLGLTLARSFVA  279 (403)
T ss_pred             EEEEeCCCCceEEeECCCCCeEEEEECCHHH-HHHHHCCCHHHHHHHHHHHhhhhcCceEeccCccEeechhhhhhhccC
Confidence            3344455555555544333222333211100 0011122333344444444443322222221 1234444444556654


Q ss_pred             CCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcC---CCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHh
Q 012845          357 CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD---IAPASILNTYETERKPIAEFNTALSVQNFRAAM  432 (455)
Q Consensus       357 ~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~---~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~  432 (455)
                        +||+|||||||.++|+.|||+|+||+||..|+++|.+..+.   .....+|+.|++.|+++...++..++...+.++
T Consensus       280 --grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~  356 (403)
T PRK07333        280 --PRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQRWRRFDTVRMGVTTDVLNRLFS  356 (403)
T ss_pred             --CCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHc
Confidence              99999999999999999999999999999999999987642   246899999999999999999998887766554

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=100.00  E-value=2.4e-37  Score=309.72  Aligned_cols=345  Identities=18%  Similarity=0.209  Sum_probs=229.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC------CCcccccChhHHHHHHhhhchHHHHHhc-CCCcc
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST------HPQAHFINNRYALVFRKLDGLAEEIERS-QPPVD  113 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~------~~~~~~l~~~~~~~l~~~~gl~~~l~~~-~~~~~  113 (455)
                      ...+||+||||||+|+++|+.|++.|++|+|||+.+....      ..+...++++++++|+++ |+++.+... ..+..
T Consensus         3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~l-Gl~~~~~~~~~~~~~   81 (391)
T PRK08020          3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGL-GVWDAVQAMRSHPYR   81 (391)
T ss_pred             cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHc-CChhhhhhhhCcccc
Confidence            4569999999999999999999999999999999864321      224568899999999999 999988653 23322


Q ss_pred             cccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhc-ccccccCCCcccccccccccceEE
Q 012845          114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREIL  192 (455)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~  192 (455)
                      ...   ......+....  +.   ...   ..+...+.++|..|.+.|.+.+.+. |+                   +++
T Consensus        82 ~~~---~~~~~~~~~~~--~~---~~~---~~~~~g~~i~r~~l~~~L~~~~~~~~gv-------------------~i~  131 (391)
T PRK08020         82 RLE---TWEWETAHVVF--DA---AEL---KLPELGYMVENRVLQLALWQALEAHPNV-------------------TLR  131 (391)
T ss_pred             eEE---EEeCCCCeEEe--cc---ccc---CCCccEEEEEcHHHHHHHHHHHHcCCCc-------------------EEE
Confidence            111   11111121111  10   000   0122245688999999999998876 55                   899


Q ss_pred             eccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCccccccc
Q 012845          193 MGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLN  272 (455)
Q Consensus       193 ~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (455)
                      ++++|+++..+++.+.+++.   +|.    ++++|+||+|||.+|.+|+.++.......+.+..+........       
T Consensus       132 ~~~~v~~i~~~~~~~~v~~~---~g~----~~~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~-------  197 (391)
T PRK08020        132 CPASLQALQRDDDGWELTLA---DGE----EIQAKLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCEN-------  197 (391)
T ss_pred             cCCeeEEEEEcCCeEEEEEC---CCC----EEEeCEEEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecC-------
Confidence            99999999887777777665   554    7899999999999999999998766555555444443332221       


Q ss_pred             CCCceEEEEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEeceeeec
Q 012845          273 ERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAE  352 (455)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (455)
                      ......+..+.+.+...+++.........|.... .....+...+.+.+.+.+.+.++.............|++.....+
T Consensus       198 ~~~~~~~~~~~~~g~~~~~p~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pl~~~~~~  276 (391)
T PRK08020        198 PPGDSTWQQFTPSGPRAFLPLFDNWASLVWYDSP-ARIRQLQAMSMAQLQQEIAAHFPARLGAVTPVAAGAFPLTRRHAL  276 (391)
T ss_pred             CCCCEEEEEEcCCCCEEEeECCCCcEEEEEECCH-HHHHHHHCCCHHHHHHHHHHHhhhhccceEeccccEeecceeehh
Confidence            1222333334444444444333221122222110 001112233445555555554443333333333445676666666


Q ss_pred             ccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcC-C--CCchhhhhHHHhhhHHHHHhHHhHHHHHH
Q 012845          353 KFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD-I--APASILNTYETERKPIAEFNTALSVQNFR  429 (455)
Q Consensus       353 ~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~-~--~~~~al~~Y~~~r~~~~~~~~~~s~~~~~  429 (455)
                      .|..  +|++|+|||||.++|+.|||+|+||+||..|+++|.+..+. .  ....+|+.|++.|+++...++..+..+++
T Consensus       277 ~~~~--~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~  354 (391)
T PRK08020        277 QYVQ--PGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRRMADNLLMQSGMDLFYA  354 (391)
T ss_pred             hhcc--CcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7765  99999999999999999999999999999999999986532 1  34689999999999999888887777666


Q ss_pred             HHhc
Q 012845          430 AAME  433 (455)
Q Consensus       430 ~~~~  433 (455)
                      .+..
T Consensus       355 ~~~~  358 (391)
T PRK08020        355 GFSN  358 (391)
T ss_pred             HHcC
Confidence            5553

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=100.00  E-value=1.2e-37  Score=311.74  Aligned_cols=340  Identities=15%  Similarity=0.198  Sum_probs=226.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC-----CcccccChhHHHHHHhhhchHHHHHhc-CCCccc
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH-----PQAHFINNRYALVFRKLDGLAEEIERS-QPPVDL  114 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~-----~~~~~l~~~~~~~l~~~~gl~~~l~~~-~~~~~~  114 (455)
                      ...+||+||||||+|+++|+.|+++|++|+||||.+.+...     .+...++++++++|+++ |+++.+.+. ..+...
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~l-Gl~~~~~~~~~~~~~~   82 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRL-GVWPAVRAARAQPYRR   82 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHC-CchhhhhHhhCCcccE
Confidence            45689999999999999999999999999999998765322     23467899999999999 999998763 333321


Q ss_pred             ccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEec
Q 012845          115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG  194 (455)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~  194 (455)
                         ..+.....+... .++..   ..   ......+.++|..|.+.|.+.+.+.|+                   +++++
T Consensus        83 ---~~~~~~~~~~~~-~~~~~---~~---~~~~~~~~v~~~~l~~~L~~~~~~~gv-------------------~i~~~  133 (392)
T PRK08773         83 ---MRVWDAGGGGEL-GFDAD---TL---GREQLGWIVENDLLVDRLWAALHAAGV-------------------QLHCP  133 (392)
T ss_pred             ---EEEEeCCCCceE-Eechh---cc---CCCcCEEEEEhHHHHHHHHHHHHhCCC-------------------EEEcC
Confidence               111111111111 11110   00   011123567899999999999998886                   99999


Q ss_pred             cEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCC
Q 012845          195 HECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNER  274 (455)
Q Consensus       195 ~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (455)
                      ++|++++.+++.+.+++.   +|.    ++++|+||+|||.+|.+|+.++.......+.+..+....... .      +.
T Consensus       134 ~~v~~i~~~~~~v~v~~~---~g~----~~~a~~vV~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~-~------~~  199 (392)
T PRK08773        134 ARVVALEQDADRVRLRLD---DGR----RLEAALAIAADGAASTLRELAGLPVSRHDYAQRGVVAFVDTE-H------PH  199 (392)
T ss_pred             CeEEEEEecCCeEEEEEC---CCC----EEEeCEEEEecCCCchHHHhhcCCceEEEeccEEEEEEEEcc-C------CC
Confidence            999999988887777665   554    789999999999999999999866544333333322222111 1      12


Q ss_pred             CceEEEEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEE-eeceEeceeeecc
Q 012845          275 PGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVAEK  353 (455)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  353 (455)
                      +...+..+.+++...+++.+.....+.|.++.... +....++.+.+.+.+.+.++.......... ...|++.....+.
T Consensus       200 ~~~~~~~~~~~g~~~~lP~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  278 (392)
T PRK08773        200 QATAWQRFLPTGPLALLPFADGRSSIVWTLPDAEA-ERVLALDEAAFSRELTQAFAARLGEVRVASPRTAFPLRRQLVQQ  278 (392)
T ss_pred             CCEEEEEeCCCCcEEEEECCCCceEEEEECCHHHH-HHHHcCCHHHHHHHHHHHHhhhhcCeEecCCccEeechhhhhhh
Confidence            33444455666655555554444444454432111 122334444444444444433222222221 2245655556667


Q ss_pred             cccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcC---CCCchhhhhHHHhhhHHHHHhHHhHHHH
Q 012845          354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD---IAPASILNTYETERKPIAEFNTALSVQN  427 (455)
Q Consensus       354 ~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~---~~~~~al~~Y~~~r~~~~~~~~~~s~~~  427 (455)
                      |..  +||+|+|||||.|+|+.|||+|+||+||..|+++|.+....   .....+|+.|++.|+++...+.......
T Consensus       279 ~~~--~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~~~~~~~~~~~l  353 (392)
T PRK08773        279 YVS--GRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTRRSDNTVAAYGFDAI  353 (392)
T ss_pred             hcC--CcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            764  99999999999999999999999999999999999987532   2345899999999999987666655433

>PRK06753 hypothetical protein; Provisional

Probab=100.00  E-value=7.6e-38  Score=311.33  Aligned_cols=329  Identities=19%  Similarity=0.215  Sum_probs=217.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEeec
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~~  123 (455)
                      .||+||||||+||++|+.|+++|++|+||||++.+...++++.|.+++++.|+.+ |+++.+...+.+.....   +. +
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~-gl~~~~~~~~~~~~~~~---~~-~   75 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNH-DLAKGIKNAGQILSTMN---LL-D   75 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhc-ChHHHHHhcCCccccee---EE-c
Confidence            3799999999999999999999999999999999888889999999999999999 99998877665543221   21 2


Q ss_pred             CCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeec
Q 012845          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (455)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~  203 (455)
                      .+|..+...+..        . ......++|..|.+.|.+.+..                     .+++++++|++++.+
T Consensus        76 ~~g~~~~~~~~~--------~-~~~~~~i~R~~l~~~L~~~~~~---------------------~~i~~~~~v~~i~~~  125 (373)
T PRK06753         76 DKGTLLNKVKLK--------S-NTLNVTLHRQTLIDIIKSYVKE---------------------DAIFTGKEVTKIENE  125 (373)
T ss_pred             CCCCEEeecccc--------c-CCccccccHHHHHHHHHHhCCC---------------------ceEEECCEEEEEEec
Confidence            234333222110        0 1123568999999999988653                     278999999999988


Q ss_pred             CCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEEEEc
Q 012845          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFN  283 (455)
Q Consensus       204 ~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (455)
                      ++++.+++.   +|.    ++.+|+||+|||.+|.+|++++...... +........... ...  .  ..+......+.
T Consensus       126 ~~~v~v~~~---~g~----~~~~~~vigadG~~S~vR~~~~~~~~~~-~~g~~~~~~~~~-~~~--~--~~~~~~~~~~~  192 (373)
T PRK06753        126 TDKVTIHFA---DGE----SEAFDLCIGADGIHSKVRQSVNADSKVR-YQGYTCFRGLID-DID--L--KLPDCAKEYWG  192 (373)
T ss_pred             CCcEEEEEC---CCC----EEecCEEEECCCcchHHHHHhCCCCCce-EcceEEEEEEec-ccc--c--cCccceEEEEc
Confidence            888877765   664    6799999999999999999997543211 111111111111 110  0  01112223334


Q ss_pred             cCceEEEEeecCCCCeEEEEeecC--CCCCCCCCCCHHHHHHHHHHh-------hCCCCCCeeEEEeeceEec-eeeecc
Q 012845          284 TEAIGVLVAHDLKEGEFILQVPFY--PPQQNLEDFSPEICEKLIFKL-------VGWELSDIDVIDIKPWVMH-AEVAEK  353 (455)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~  353 (455)
                      +.+..+++  +...+...|.+...  .........+.+.+.+.+..+       +.... ...+.   .++.. ....+.
T Consensus       193 ~~g~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~  266 (373)
T PRK06753        193 TKGRFGIV--PLLNNQAYWFITINAKERDPKYSSFGKPHLQAYFNHYPNEVREILDKQS-ETGIL---HHDIYDLKPLKS  266 (373)
T ss_pred             CCCEEEEE--EcCCCeEEEEEEeccccCCcccccccHHHHHHHHhcCChHHHHHHHhCC-cccce---eecccccccccc
Confidence            44444443  33444444443322  112223333333333333221       11100 00000   11111 122345


Q ss_pred             cccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHh
Q 012845          354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAM  432 (455)
Q Consensus       354 ~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~  432 (455)
                      |.  .+||+|||||||.|+|+.|||+|+||+||..|+++|.+    .+..++|+.|++.|++++..+++.|+...+.++
T Consensus       267 ~~--~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~~----~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~  339 (373)
T PRK06753        267 FV--YGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLNA----YDFEKALQRYDKIRVKHTAKVIKRSRKIGKIAQ  339 (373)
T ss_pred             cc--CCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHhhh----ccHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHh
Confidence            54  48999999999999999999999999999999999963    256789999999999999999999998777655

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=100.00  E-value=1.4e-37  Score=310.74  Aligned_cols=342  Identities=20%  Similarity=0.262  Sum_probs=229.8

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC-----CcccccChhHHHHHHhhhchHHHHHh-cCCCcccccce
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH-----PQAHFINNRYALVFRKLDGLAEEIER-SQPPVDLWRKF  118 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~-----~~~~~l~~~~~~~l~~~~gl~~~l~~-~~~~~~~~~~~  118 (455)
                      ||+||||||+|+++|+.|+++|++|+||||.+.++..     +++..+++++++.|+++ |+++++.. ...+....   
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~l-Gl~~~~~~~~~~~~~~~---   76 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKL-GVWDKIEPDRAQPIRDI---   76 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHC-CchhhhhhhcCCCceEE---
Confidence            7999999999999999999999999999999886543     46789999999999999 99999877 55544322   


Q ss_pred             EEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEE
Q 012845          119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV  198 (455)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~  198 (455)
                      .+. ...+......+.   ...   ..+.....++|..|.+.|.+.+.+.|.                  ++++++++|+
T Consensus        77 ~~~-~~~~~~~~~~~~---~~~---~~~~~~~~i~r~~l~~~L~~~~~~~~~------------------~~v~~~~~v~  131 (385)
T TIGR01988        77 HVS-DGGSFGALHFDA---DEI---GLEALGYVVENRVLQQALWERLQEYPN------------------VTLLCPARVV  131 (385)
T ss_pred             EEE-eCCCCceEEech---hhc---CCCccEEEEEcHHHHHHHHHHHHhCCC------------------cEEecCCeEE
Confidence            111 111111111110   000   112234678999999999999988771                  3899999999


Q ss_pred             EeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceE
Q 012845          199 SVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML  278 (455)
Q Consensus       199 ~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (455)
                      +++..++.+.+++.   +|.    ++.+|+||+|||.+|.+|++++.+.....+....+...+....       ..+...
T Consensus       132 ~i~~~~~~~~v~~~---~g~----~~~~~~vi~adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  197 (385)
T TIGR01988       132 ELPRHSDHVELTLD---DGQ----QLRARLLVGADGANSKVRQLAGIPTTGWDYGQSAVVANVKHER-------PHQGTA  197 (385)
T ss_pred             EEEecCCeeEEEEC---CCC----EEEeeEEEEeCCCCCHHHHHcCCCccccccCCeEEEEEEEecC-------CCCCEE
Confidence            99988877777665   664    6899999999999999999998665443333333332222111       112233


Q ss_pred             EEEEccCceEEEEeecCCCCeEEEEeecCCCC-CCCCCCCHHHHHHHHHHhhCCCCCCeeE-EEeeceEeceeeeccccc
Q 012845          279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDV-IDIKPWVMHAEVAEKFLC  356 (455)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  356 (455)
                      +..+.+.+..++++.+  .+...+.+...... .....++.+.+.+.+.+.+......... .....+++.....+.|. 
T Consensus       198 ~~~~~~~g~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  274 (385)
T TIGR01988       198 WERFTPTGPLALLPLP--DNRSSLVWTLPPEEAERLLALSDEEFLAELQRAFGSRLGAITLVGERHAFPLSLTHAKRYV-  274 (385)
T ss_pred             EEEecCCCCEEEeECC--CCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhcCceEeccCcceeechhhhhhhee-
Confidence            3334444444444443  34433333222111 1122344555555555544322222211 12233444444445555 


Q ss_pred             CCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCC---CCchhhhhHHHhhhHHHHHhHHhHHHHHHHHhc
Q 012845          357 CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI---APASILNTYETERKPIAEFNTALSVQNFRAAME  433 (455)
Q Consensus       357 ~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~---~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~  433 (455)
                       .++|+|||||||.|+|++|||+|+||+||..|+++|.+.++..   ....+|+.|++.|++++..++..++.....+..
T Consensus       275 -~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~~~~~~~~~~~  353 (385)
T TIGR01988       275 -APRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFDNAAMLGATDGLNRLFSN  353 (385)
T ss_pred             -cCceEEEecccccCCccccchhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence             4999999999999999999999999999999999999876422   246899999999999999999999887776653

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=100.00  E-value=1.5e-37  Score=310.26  Aligned_cols=340  Identities=22%  Similarity=0.306  Sum_probs=227.4

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCCCCC----CcccccChhHHHHHHhhhchHHHHHhcCCCcccccceE
Q 012845           45 PVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTH----PQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g-~~V~l~Er~~~~~~~----~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~  119 (455)
                      ||+||||||+|+++|+.|+++| ++|+||||.+.+...    .++..++++++++|+++ |+++.+...+.+...+   .
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~l-gl~~~~~~~~~~~~~~---~   76 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKL-GLWPKLAPFATPILDI---H   76 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHC-CChhhhHhhcCccceE---E
Confidence            7999999999999999999999 999999999877554    35789999999999999 9999987766554321   1


Q ss_pred             Eeec-CCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhc-ccccccCCCcccccccccccceEEeccEE
Q 012845          120 YCTS-VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHEC  197 (455)
Q Consensus       120 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~~~~~v  197 (455)
                      +... ..+...  ..   ..+.   ..+...+.++|..|.+.|.+.+.+. |+                   +++++++|
T Consensus        77 ~~~~~~~~~~~--~~---~~~~---~~~~~~~~i~r~~l~~~L~~~~~~~~gv-------------------~~~~~~~v  129 (382)
T TIGR01984        77 VSDQGHFGATH--LR---ASEF---GLPALGYVVELADLGQALLSRLALLTNI-------------------QLYCPARY  129 (382)
T ss_pred             EEcCCCCceEE--ec---hhhc---CCCccEEEEEcHHHHHHHHHHHHhCCCc-------------------EEEcCCeE
Confidence            1111 011110  00   0000   0122235688999999999999884 65                   99999999


Q ss_pred             EEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCce
Q 012845          198 VSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM  277 (455)
Q Consensus       198 ~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (455)
                      ++++.+++++.+++.   +|.    ++.+|+||+|||.+|.+|+.++.......+.+..+...+.....       ....
T Consensus       130 ~~i~~~~~~~~v~~~---~g~----~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  195 (382)
T TIGR01984       130 KEIIRNQDYVRVTLD---NGQ----QLRAKLLIAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQP-------HQGC  195 (382)
T ss_pred             EEEEEcCCeEEEEEC---CCC----EEEeeEEEEecCCChHHHHHcCCCCcccccCCEEEEEEEEecCC-------CCCE
Confidence            999888887777665   554    78999999999999999999986654443333333322211111       1122


Q ss_pred             EEEEEccCceEEEEeecCCCC-eEEEEeecCCC-CCCCCCCCHHHHHHHHHHhhCCCCCCeeE-EEeeceEeceeeeccc
Q 012845          278 LFFIFNTEAIGVLVAHDLKEG-EFILQVPFYPP-QQNLEDFSPEICEKLIFKLVGWELSDIDV-IDIKPWVMHAEVAEKF  354 (455)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  354 (455)
                      .+..+.+.+...++  |...+ .+.+....... .....+.+.+.+.+.+.+.+++....... .....|++.....+.|
T Consensus       196 ~~~~~~~~g~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (382)
T TIGR01984       196 AFERFTPHGPLALL--PLKDNYRSSLVWCLPSKQADTIANLPDAEFLAELQQAFGWRLGKITQVGERKTYPLKLRIAETH  273 (382)
T ss_pred             EEEeeCCCCCeEEC--cCCCCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhccCeEEcCCccEeecchhhhhhe
Confidence            23334444433333  33333 33222221111 01122334445555555555433222221 1222355544445555


Q ss_pred             ccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHhc
Q 012845          355 LCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAME  433 (455)
Q Consensus       355 ~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~  433 (455)
                      .  .+||+|||||||.|+|++|||+|+||+||..|+++|.+...+.....+|+.|++.|+++...++.++....+.+..
T Consensus       274 ~--~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~  350 (382)
T TIGR01984       274 V--HPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDARIDLGTYALLQEYLRRRQFDQFITIGLTDGLNRLFSN  350 (382)
T ss_pred             e--cCCEEEEeecccccCCccccchhhhHHHHHHHHHHHHHhccCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            5  4999999999999999999999999999999999998765333457899999999999999999999887776654

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK09126 hypothetical protein; Provisional

Probab=100.00  E-value=1.8e-37  Score=310.74  Aligned_cols=343  Identities=17%  Similarity=0.209  Sum_probs=224.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-----CCCcccccChhHHHHHHhhhchHHHHHhcCC-Ccccc
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS-----THPQAHFINNRYALVFRKLDGLAEEIERSQP-PVDLW  115 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~-----~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~-~~~~~  115 (455)
                      +++||+||||||+|+++|+.|+++|++|+||||.+.+.     ..+.++.|++++++.|+++ |+++.+..... +..  
T Consensus         2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~l-Gl~~~~~~~~~~~~~--   78 (392)
T PRK09126          2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRL-GAWDRIPEDEISPLR--   78 (392)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHC-CChhhhccccCCccc--
Confidence            36999999999999999999999999999999998642     2355677899999999999 99988865432 221  


Q ss_pred             cceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHh-cccccccCCCcccccccccccceEEec
Q 012845          116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILMG  194 (455)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~i~~~  194 (455)
                       ...+. +  +............    .........++|..|.+.|.+.+.+ .|+                   +++++
T Consensus        79 -~~~~~-~--~~~~~~~~~~~~~----~~~~~~g~~~~~~~l~~~l~~~~~~~~g~-------------------~i~~~  131 (392)
T PRK09126         79 -DAKVL-N--GRSPFALTFDARG----RGADALGYLVPNHLIRRAAYEAVSQQDGI-------------------ELLTG  131 (392)
T ss_pred             -eEEEE-c--CCCCceeEeehhh----cCCCcceEEEeHHHHHHHHHHHHhhCCCc-------------------EEEcC
Confidence             11111 1  1111111100000    0001123456888899999988765 454                   99999


Q ss_pred             cEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCC
Q 012845          195 HECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNER  274 (455)
Q Consensus       195 ~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (455)
                      ++|++++.+++.+.|.+.   +|+    ++++|+||+|||.+|.+|+.++.......+....+...... .      ...
T Consensus       132 ~~v~~~~~~~~~~~v~~~---~g~----~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~-~------~~~  197 (392)
T PRK09126        132 TRVTAVRTDDDGAQVTLA---NGR----RLTARLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRH-E------LPH  197 (392)
T ss_pred             CeEEEEEEcCCeEEEEEc---CCC----EEEeCEEEEeCCCCchhhHhcCCCccccccCCeEEEEEEec-c------CCC
Confidence            999999887777777665   664    78999999999999999999986554333333332222211 1      112


Q ss_pred             CceEEEEEccCceEEEEeecCCCCeEEEEeecCCCC-CCCCCCCHHHHHHHHHHhhCCCCCCeeE-EEeeceEeceeeec
Q 012845          275 PGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDV-IDIKPWVMHAEVAE  352 (455)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~  352 (455)
                      ....+..+..+...++++.  .++.+.+.+....+. .....++.+.+.+.+...+......... .....|+......+
T Consensus       198 ~~~~~~~~~~~~~~~~~P~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (392)
T PRK09126        198 HHTAWEWFGYGQTLALLPL--NGHLSSLVLTLPPDQIEALLALDPEAFAAEVTARFKGRLGAMRLVSSRHAYPLVAVYAH  275 (392)
T ss_pred             CCEEEEEecCCCCeEEeEC--CCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhccCeEEcCCCcEeechHHHHH
Confidence            2334444555544444433  334444443322211 1112344444444444433322222211 11223444444455


Q ss_pred             ccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcC---CCCchhhhhHHHhhhHHHHHhHHhHHHHHH
Q 012845          353 KFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD---IAPASILNTYETERKPIAEFNTALSVQNFR  429 (455)
Q Consensus       353 ~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~---~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~  429 (455)
                      +|..  +||+|+|||||.++|+.|||+|+||+||..|+++|...++.   ....++|+.|+++|+++...++..++....
T Consensus       276 ~~~~--~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~  353 (392)
T PRK09126        276 RFVA--KRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARRGQDIGAASLLERYERKHRLATRPLYHATNAIAA  353 (392)
T ss_pred             HHhh--cceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6654  99999999999999999999999999999999999987642   234689999999999999999999988777


Q ss_pred             HHh
Q 012845          430 AAM  432 (455)
Q Consensus       430 ~~~  432 (455)
                      .++
T Consensus       354 ~~~  356 (392)
T PRK09126        354 LYT  356 (392)
T ss_pred             HHC
Confidence            554

>PRK07538 hypothetical protein; Provisional

Probab=100.00  E-value=6.4e-37  Score=308.37  Aligned_cols=342  Identities=19%  Similarity=0.202  Sum_probs=217.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEeec
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~~  123 (455)
                      +||+||||||+||++|+.|+++|++|+||||.+.+.+.+.++.+.+++++.|+++ |+++.+...+.+...+.   +. +
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~l-gl~~~l~~~~~~~~~~~---~~-~   75 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAEL-GLLDALDAIGIRTRELA---YF-N   75 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHC-CCHHHHHhhCCCCcceE---EE-c
Confidence            4899999999999999999999999999999998888888999999999999999 99999887665543322   21 2


Q ss_pred             CCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHh-cccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                      ..|..+...+......     .......++|..|++.|.+.+.+ .|.                  ..|+++++|++++.
T Consensus        76 ~~g~~~~~~~~~~~~~-----~~~~~~~i~R~~l~~~L~~~~~~~~g~------------------~~i~~~~~v~~~~~  132 (413)
T PRK07538         76 RHGQRIWSEPRGLAAG-----YDWPQYSIHRGELQMLLLDAVRERLGP------------------DAVRTGHRVVGFEQ  132 (413)
T ss_pred             CCCCEEeeccCCcccC-----CCCceEEEEHHHHHHHHHHHHHhhcCC------------------cEEEcCCEEEEEEe
Confidence            2343332211100000     01123458999999999999866 353                  36999999999998


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEEEE
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF  282 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (455)
                      +++++.+.+..  +..+..+++++|+||+|||.+|.+|+++++......+.............  .    ......+.+.
T Consensus       133 ~~~~~~~~~~~--~~~g~~~~~~adlvIgADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~--~----~~~~~~~~~~  204 (413)
T PRK07538        133 DADVTVVFLGD--RAGGDLVSVRGDVLIGADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAP--P----FLTGRSMVMA  204 (413)
T ss_pred             cCCceEEEEec--cCCCccceEEeeEEEECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCc--c----ccCCCcEEEE
Confidence            77776666552  11222347899999999999999999996543222222111111111110  0    0111122222


Q ss_pred             c-cCceEEEEeecCC-----CCeEEEEeecCCC---CCCCCCCCH-HHHHHHHHHhhCCCCCCe---eEE----EeeceE
Q 012845          283 N-TEAIGVLVAHDLK-----EGEFILQVPFYPP---QQNLEDFSP-EICEKLIFKLVGWELSDI---DVI----DIKPWV  345 (455)
Q Consensus       283 ~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~l~~~~~~~~~~~---~~~----~~~~~~  345 (455)
                      . .+....+++....     ...+.|.++...+   ......|.. ....+++..+.+|.....   +++    ....|+
T Consensus       205 g~~~~~~~~~p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~p  284 (413)
T PRK07538        205 GHLDGKLVVYPISEPVDADGRQLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRAAEAIYEYP  284 (413)
T ss_pred             cCCCCEEEEEECCCCcccCCceEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHHhcCcceeecc
Confidence            2 2222333322211     1244555544332   122233332 223333333223322100   111    111233


Q ss_pred             ece-eeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhH
Q 012845          346 MHA-EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALS  424 (455)
Q Consensus       346 ~~~-~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s  424 (455)
                      +.. ...+.|.  .+||+|||||||.|+|++|||+|+||+||..|+++|.+.   .+..++|+.|++.|++++..++..+
T Consensus       285 ~~~~~~~~~w~--~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~---~~~~~aL~~Ye~~R~~~~~~~~~~s  359 (413)
T PRK07538        285 MVDRDPLPRWT--RGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAAH---GDPEAALAAYEAERRPATAQIVLAN  359 (413)
T ss_pred             ccccCCCCccc--CCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHhhHHHHHHHHHh
Confidence            332 2344555  499999999999999999999999999999999999863   3467899999999999999999998


Q ss_pred             HH
Q 012845          425 VQ  426 (455)
Q Consensus       425 ~~  426 (455)
                      +.
T Consensus       360 ~~  361 (413)
T PRK07538        360 RL  361 (413)
T ss_pred             hh
Confidence            87

>PRK06996 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-36  Score=305.00  Aligned_cols=344  Identities=17%  Similarity=0.184  Sum_probs=233.0

Q ss_pred             cCCcccCEEEECCCHHHHHHHHHHHhCC----CCEEEEcCCCCCC--CCCcccccChhHHHHHHhhhchHHHHHhcCCCc
Q 012845           39 SNEAVVPVLIVGAGPVGLVLSILLTKLG----IKCSVLEKNKAFS--THPQAHFINNRYALVFRKLDGLAEEIERSQPPV  112 (455)
Q Consensus        39 ~~~~~~dVvIVGgG~aGl~~A~~La~~g----~~V~l~Er~~~~~--~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~  112 (455)
                      |-.+.+||+||||||+|+++|+.|+++|    ++|+|+|+.+.+.  ...++..++++++++|+++ |+++..   ..+.
T Consensus         7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~l-g~~~~~---~~~~   82 (398)
T PRK06996          7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETL-GAWPAD---ATPI   82 (398)
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhC-CCchhc---CCcc
Confidence            3356789999999999999999999997    4699999986543  2347899999999999999 998852   2222


Q ss_pred             ccccceEEee-cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceE
Q 012845          113 DLWRKFIYCT-SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREI  191 (455)
Q Consensus       113 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i  191 (455)
                      ..   ..+.. ...+.......     +.   ..+...+.++|..|.+.|.+.+.+.|+                   .+
T Consensus        83 ~~---~~~~~~~~~g~~~~~~~-----~~---~~~~~g~~v~r~~l~~~L~~~~~~~g~-------------------~~  132 (398)
T PRK06996         83 EH---IHVSQRGHFGRTLIDRD-----DH---DVPALGYVVRYGSLVAALARAVRGTPV-------------------RW  132 (398)
T ss_pred             cE---EEEecCCCCceEEeccc-----cc---CCCcCEEEEEhHHHHHHHHHHHHhCCC-------------------EE
Confidence            11   11110 01111111110     11   112235678999999999999999886                   89


Q ss_pred             EeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCC-CchhhhhcCCCccCCcccceeEEEEEecCCccccc
Q 012845          192 LMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGA-GSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYL  270 (455)
Q Consensus       192 ~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~-~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (455)
                      ++++++++++.+++++.+++.   ++.+ .+++++|+||+|||. .|.+|+.++.......+.+..+........     
T Consensus       133 ~~~~~v~~~~~~~~~v~v~~~---~~~g-~~~i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~-----  203 (398)
T PRK06996        133 LTSTTAHAPAQDADGVTLALG---TPQG-ARTLRARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSA-----  203 (398)
T ss_pred             EcCCeeeeeeecCCeEEEEEC---CCCc-ceEEeeeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccC-----
Confidence            999999999888888877765   4432 137899999999997 578899888776666666555554433221     


Q ss_pred             ccCCCceEEEEEccCceEEEEeecCCCCe-EEEEeecCCC-CCCCCCCCHHHHHHHHHHhhCCCCCCeeEE-EeeceEec
Q 012845          271 LNERPGMLFFIFNTEAIGVLVAHDLKEGE-FILQVPFYPP-QQNLEDFSPEICEKLIFKLVGWELSDIDVI-DIKPWVMH  347 (455)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~  347 (455)
                        ..+...+..+.+.+...+++.+..... +.+....... ......++.+.+.+.+.+.++......... ....|++.
T Consensus       204 --~~~~~~~~~~~~~G~~~~lp~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~  281 (398)
T PRK06996        204 --PRPGWAWERFTHEGPLALLPLGGPRQADYALVWCCAPDEAARRAALPDDAFLAELGAAFGTRMGRFTRIAGRHAFPLG  281 (398)
T ss_pred             --CCCCEEEEEecCCCCeEEeECCCCCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHhccccCceEEecceEEEeee
Confidence              123334444555555555544332221 2222111111 112334555556666666665543333222 12245555


Q ss_pred             eeeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHH
Q 012845          348 AEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQN  427 (455)
Q Consensus       348 ~~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~  427 (455)
                      ....+.|..  +||+|||||||.++|+.|||+|+||+||..|+++|.+   ......+|+.|++.|++++..++..+..+
T Consensus       282 ~~~~~~~~~--grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~---~~~~~~~L~~Y~~~R~~~~~~~~~~s~~l  356 (398)
T PRK06996        282 LNAARTLVN--GRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSD---HGATPLALATFAARRALDRRVTIGATDLL  356 (398)
T ss_pred             cccccceec--CCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555566664  9999999999999999999999999999999999975   23356889999999999999999999988


Q ss_pred             HHHHh
Q 012845          428 FRAAM  432 (455)
Q Consensus       428 ~~~~~  432 (455)
                      .+.++
T Consensus       357 ~~~~~  361 (398)
T PRK06996        357 PRLFT  361 (398)
T ss_pred             HHHHc
Confidence            77665

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=100.00  E-value=9.5e-37  Score=304.29  Aligned_cols=343  Identities=20%  Similarity=0.265  Sum_probs=215.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC--CCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS--THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~--~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      .+||+||||||+|+++|+.|+++|++|+||||.+.+.  ...++..++++++++|+++ |+++.+...+.+.....   +
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~~~---~   77 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREA-GVDERMDREGLVHEGTE---I   77 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHC-CChHHHHhcCceecceE---E
Confidence            4799999999999999999999999999999998642  2345666899999999999 99999988665543221   1


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                      ..  .+. ....+.....      .......+.+..|.+.|.+.+.+.|+                   .++++++++.+
T Consensus        78 ~~--~~~-~~~~~~~~~~------~~~~~~~~~~~~l~~~L~~~~~~~g~-------------------~~~~~~~~v~~  129 (390)
T TIGR02360        78 AF--DGQ-RFRIDLKALT------GGKTVMVYGQTEVTRDLMEAREAAGL-------------------TTVYDADDVRL  129 (390)
T ss_pred             ee--CCE-EEEEeccccC------CCceEEEeCHHHHHHHHHHHHHhcCC-------------------eEEEeeeeEEE
Confidence            11  111 1111111000      01111223567888999999888776                   88899998887


Q ss_pred             ee-cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCC--ccc-ceeEEEEEecCCcccccccCCCc
Q 012845          201 SA-TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGE--KDL-QKLVSVHFLSKDLGDYLLNERPG  276 (455)
Q Consensus       201 ~~-~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~  276 (455)
                      .. +++.+.|++.  .+|+  ..++++|+||+|||.+|.||++++......  ..+ ..+.  .......     . .+.
T Consensus       130 ~~~~~~~~~V~~~--~~g~--~~~i~adlvIGADG~~S~VR~~l~~~~~~~~~~~~~~~~~--~l~~~~~-----~-~~~  197 (390)
T TIGR02360       130 HDLAGDRPYVTFE--RDGE--RHRLDCDFIAGCDGFHGVSRASIPAEVLKEFERVYPFGWL--GILSETP-----P-VSH  197 (390)
T ss_pred             EecCCCccEEEEE--ECCe--EEEEEeCEEEECCCCchhhHHhcCcccceeeeccCCcceE--EEecCCC-----C-CCC
Confidence            54 4555566653  1443  236899999999999999999985432110  011 1111  1111100     0 111


Q ss_pred             eEEEEEccCceEEEEeecC-CCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEE----EeeceEeceeee
Q 012845          277 MLFFIFNTEAIGVLVAHDL-KEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVI----DIKPWVMHAEVA  351 (455)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~  351 (455)
                      ...+.....++ .+..... ....+.+.++.   ......|..+.+.+.+.+.+..........    .....++.....
T Consensus       198 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  273 (390)
T TIGR02360       198 ELIYSNHERGF-ALCSMRSATRSRYYVQVPL---TDKVEDWSDDRFWAELKRRLPSEAAERLVTGPSIEKSIAPLRSFVC  273 (390)
T ss_pred             ceEEEeCCCce-EEEeccCCCcceEEEEcCC---CCChhhCChhHHHHHHHHhcCchhhhhhccCCccceeeeeHHhhcc
Confidence            11222222222 2223221 22234443321   223444554444555544432111111000    011122333344


Q ss_pred             cccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHH
Q 012845          352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA  431 (455)
Q Consensus       352 ~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~  431 (455)
                      ++|.  .+||+|||||||.|+|+.|||+|+||+||.+|+++|.+... .+...+|+.|++.|++|+..+++.|+.+-..+
T Consensus       274 ~~~~--~grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~~~-~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~  350 (390)
T TIGR02360       274 EPMQ--YGRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHYQ-EGSSAGIEGYSARALARVWKAERFSWWMTSLL  350 (390)
T ss_pred             ccCc--cCCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5554  49999999999999999999999999999999999987532 34578999999999999999999999998888


Q ss_pred             hcccc
Q 012845          432 MEVPS  436 (455)
Q Consensus       432 ~~~~~  436 (455)
                      |.+++
T Consensus       351 ~~~~~  355 (390)
T TIGR02360       351 HRFPD  355 (390)
T ss_pred             cCCCC
Confidence            88774

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK07588 hypothetical protein; Provisional

Probab=100.00  E-value=9.2e-37  Score=305.32  Aligned_cols=341  Identities=16%  Similarity=0.192  Sum_probs=218.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEeec
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~~  123 (455)
                      .||+||||||+|+++|+.|+++|++|+||||.+.....+.++.+.+++++.|+++ |+++.+.+.+.+...+.   +. +
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~l-Gl~~~l~~~~~~~~~~~---~~-~   75 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRM-GITDQLREAGYQIEHVR---SV-D   75 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHc-CCHHHHHhccCCccceE---EE-c
Confidence            4899999999999999999999999999999987766677788889999999999 99999988776654322   11 2


Q ss_pred             CCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeec
Q 012845          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (455)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~  203 (455)
                      .+|..+...+...   ... ........+.|..|.+.|.+.+.. ++                   +++++++|++++.+
T Consensus        76 ~~g~~~~~~~~~~---~~~-~~g~~~~~i~r~~l~~~L~~~~~~-~v-------------------~i~~~~~v~~i~~~  131 (391)
T PRK07588         76 PTGRRKADLNVDS---FRR-MVGDDFTSLPRGDLAAAIYTAIDG-QV-------------------ETIFDDSIATIDEH  131 (391)
T ss_pred             CCCCEEEEecHHH---ccc-cCCCceEEEEHHHHHHHHHHhhhc-Ce-------------------EEEeCCEEeEEEEC
Confidence            2344332222110   000 001123568899999999886643 44                   99999999999988


Q ss_pred             CCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEEEEc
Q 012845          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFN  283 (455)
Q Consensus       204 ~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (455)
                      ++++.+++.   +|+    ++++|+||+|||.+|.+|+.+.........+.............    ....+..+.....
T Consensus       132 ~~~v~v~~~---~g~----~~~~d~vIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~  200 (391)
T PRK07588        132 RDGVRVTFE---RGT----PRDFDLVIGADGLHSHVRRLVFGPERDFEHYLGCKVAACVVDGY----RPRDERTYVLYNE  200 (391)
T ss_pred             CCeEEEEEC---CCC----EEEeCEEEECCCCCccchhhccCCccceEEEcCcEEEEEEcCCC----CCCCCceEEEEeC
Confidence            888877766   665    67899999999999999998632222111222222111111110    0111222222233


Q ss_pred             cCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCC-CCCC---eeEEE-eec--e-Eeceeeecccc
Q 012845          284 TEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGW-ELSD---IDVID-IKP--W-VMHAEVAEKFL  355 (455)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~---~~~~~-~~~--~-~~~~~~~~~~~  355 (455)
                      ++.....+  |...+...+.+....+. ....++.+...+.+.+.+.. ....   .+... ...  + +......+.|.
T Consensus       201 ~g~~~~~~--p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  277 (391)
T PRK07588        201 VGRQVARV--ALRGDRTLFLFIFRAEH-DNPPLTPAEEKQLLRDQFGDVGWETPDILAALDDVEDLYFDVVSQIRMDRWS  277 (391)
T ss_pred             CCCEEEEE--ecCCCCeEEEEEEEcCC-ccccCCHHHHHHHHHHHhccCCccHHHHHHhhhcccchheeeeeeeccCccc
Confidence            44333333  43344433333222221 12234444455555544331 1110   01110 001  1 12222344554


Q ss_pred             cCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHH
Q 012845          356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA  431 (455)
Q Consensus       356 ~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~  431 (455)
                        .+||+|||||||.|+|+.|||+|+||+||..|++.|....  .+...+|+.|++.|++++..++..++.+-..+
T Consensus       278 --~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~--~~~~~al~~Y~~~R~~~~~~~~~~~~~~~~~~  349 (391)
T PRK07588        278 --RGRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELARAG--GDHRRAFDAYEKRLRPFIAGKQAAAAKFLSVF  349 (391)
T ss_pred             --cCCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence              4999999999999999999999999999999999997531  24578999999999999999999887554433

>PRK06185 hypothetical protein; Provisional

Probab=100.00  E-value=3e-36  Score=303.36  Aligned_cols=349  Identities=20%  Similarity=0.283  Sum_probs=231.9

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcC-CCcccccce
Q 012845           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQ-PPVDLWRKF  118 (455)
Q Consensus        40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~-~~~~~~~~~  118 (455)
                      +..++||+||||||+|+++|+.|+++|++|+|||+++......++..+++.+.++|+++ |+++.+.+.. .+...   .
T Consensus         3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~l-G~~~~~~~~~~~~~~~---~   78 (407)
T PRK06185          3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDEL-GLLERFLELPHQKVRT---L   78 (407)
T ss_pred             ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHc-CChhHHhhcccceeee---E
Confidence            35679999999999999999999999999999999876555567889999999999999 9999887633 22221   1


Q ss_pred             EEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhc-ccccccCCCcccccccccccceEEeccEE
Q 012845          119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHEC  197 (455)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~~~~~v  197 (455)
                      .+.  ..+......+.... .    ........+.+..+.+.|.+.+.+. |+                   +++++++|
T Consensus        79 ~~~--~~~~~~~~~~~~~~-~----~~~~~~~~v~~~~l~~~L~~~~~~~~~v-------------------~i~~~~~v  132 (407)
T PRK06185         79 RFE--IGGRTVTLADFSRL-P----TPYPYIAMMPQWDFLDFLAEEASAYPNF-------------------TLRMGAEV  132 (407)
T ss_pred             EEE--ECCeEEEecchhhc-C----CCCCcEEEeehHHHHHHHHHHHhhCCCc-------------------EEEeCCEE
Confidence            111  12221111111000 0    0011234578889999999988775 44                   89999999


Q ss_pred             EEeeecCCceE-EEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCc
Q 012845          198 VSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPG  276 (455)
Q Consensus       198 ~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (455)
                      +++..+++.+. +.+.. .+|+   .++++|+||+|||.+|.+|++++.......+.+..+...... .      ...+.
T Consensus       133 ~~~~~~~~~v~~v~~~~-~~g~---~~i~a~~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~~~~~~-~------~~~~~  201 (407)
T PRK06185        133 TGLIEEGGRVTGVRART-PDGP---GEIRADLVVGADGRHSRVRALAGLEVREFGAPMDVLWFRLPR-E------PDDPE  201 (407)
T ss_pred             EEEEEeCCEEEEEEEEc-CCCc---EEEEeCEEEECCCCchHHHHHcCCCccccCCCceeEEEecCC-C------CCCCc
Confidence            99988776653 44431 1332   378999999999999999999987766555544433322111 0      11222


Q ss_pred             eEEEEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCC---CCCee-EEEeeceEeceeeec
Q 012845          277 MLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWE---LSDID-VIDIKPWVMHAEVAE  352 (455)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~-~~~~~~~~~~~~~~~  352 (455)
                      ..+..+.+++...+++.+ ....+.|..+... ...+...+.+.+.+.+...+++.   ..... ......+++.....+
T Consensus       202 ~~~~~~~~~g~~~llP~~-~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~  279 (407)
T PRK06185        202 SLMGRFGPGQGLIMIDRG-DYWQCGYVIPKGG-YAALRAAGLEAFRERVAELAPELADRVAELKSWDDVKLLDVRVDRLR  279 (407)
T ss_pred             ccceEecCCcEEEEEcCC-CeEEEEEEecCCC-chhhhhhhHHHHHHHHHHhCccHHHHHhhcCCccccEEEEEeccccc
Confidence            344566666655555443 2222233332111 11222334445555555543331   11111 122234555555666


Q ss_pred             ccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCC-CCchhhhhHHHhhhHHHHHhHHhHHHHHHHH
Q 012845          353 KFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI-APASILNTYETERKPIAEFNTALSVQNFRAA  431 (455)
Q Consensus       353 ~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~-~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~  431 (455)
                      .+..  +|++|||||||.++|++|||+|+||+||..|++.|.+.++.. .....|+.|++.|+++...++..+....+.+
T Consensus       280 ~~~~--~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~  357 (407)
T PRK06185        280 RWHR--PGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRGRVSDRDLAAVQRRREFPTRVTQALQRRIQRRL  357 (407)
T ss_pred             cccC--CCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence            6664  899999999999999999999999999999999999877543 3458999999999999999999988887765


Q ss_pred             hc
Q 012845          432 ME  433 (455)
Q Consensus       432 ~~  433 (455)
                      .+
T Consensus       358 ~~  359 (407)
T PRK06185        358 LA  359 (407)
T ss_pred             cc
Confidence            53

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=100.00  E-value=1.9e-36  Score=302.89  Aligned_cols=343  Identities=18%  Similarity=0.256  Sum_probs=227.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC-----cccccChhHHHHHHhhhchHHHHHhcC-CCcccc
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP-----QAHFINNRYALVFRKLDGLAEEIERSQ-PPVDLW  115 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~-----~~~~l~~~~~~~l~~~~gl~~~l~~~~-~~~~~~  115 (455)
                      +++||+||||||+|+++|+.|++.|++|+||||.+.+...+     +...+++++++.|+++ |+++.+.... .+... 
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~-g~~~~~~~~~~~~~~~-   81 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERL-GVWQALDAARLAPVYD-   81 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHc-CchhhhhhhcCCcceE-
Confidence            46899999999999999999999999999999998765433     3478899999999999 9998875422 23221 


Q ss_pred             cceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEecc
Q 012845          116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH  195 (455)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~  195 (455)
                        ..+.....+..    ....   .. ...+.....+++..|.+.|.+.+.+.|.                  ++++ ++
T Consensus        82 --~~~~~~~~~~~----~~~~---~~-~~~~~~~~~i~~~~l~~~L~~~~~~~~~------------------v~~~-~~  132 (388)
T PRK07608         82 --MRVFGDAHARL----HFSA---YQ-AGVPQLAWIVESSLIERALWAALRFQPN------------------LTWF-PA  132 (388)
T ss_pred             --EEEEECCCcee----Eeec---cc-cCCCCCEEEEEhHHHHHHHHHHHHhCCC------------------cEEE-cc
Confidence              11211111111    1000   00 0012234567899999999999988772                  2777 99


Q ss_pred             EEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCC
Q 012845          196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP  275 (455)
Q Consensus       196 ~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (455)
                      +|++++.+++.+.+++.   +|.    ++.+|+||+|||.+|.+|+.++.......+....+...+....       ...
T Consensus       133 ~v~~i~~~~~~~~v~~~---~g~----~~~a~~vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  198 (388)
T PRK07608        133 RAQGLEVDPDAATLTLA---DGQ----VLRADLVVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAER-------PHR  198 (388)
T ss_pred             eeEEEEecCCeEEEEEC---CCC----EEEeeEEEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecC-------CCC
Confidence            99999887787777765   554    7899999999999999999998765544444433333332211       122


Q ss_pred             ceEEEEEccCceEEEEeecCCCCeEEEEeecCCCC-CCCCCCCHHHHHHHHHHhhCCCCCCeeEE-EeeceEeceeeecc
Q 012845          276 GMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVI-DIKPWVMHAEVAEK  353 (455)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  353 (455)
                      ...+..+.+++..++++.+  .+.+.+.+...... ......+++.+.+.+.............. ....+++.....+.
T Consensus       199 ~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (388)
T PRK07608        199 GTAYQWFRDDGILALLPLP--DGHVSMVWSARTAHADELLALSPEALAARVERASGGRLGRLECVTPAAGFPLRLQRVDR  276 (388)
T ss_pred             CEEEEEecCCCCEEEeECC--CCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHhcCCceecCCcceeecchhhhhh
Confidence            3334444555555555443  34433322211110 11122344555665555433222222221 12234544444556


Q ss_pred             cccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHc--CCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHH
Q 012845          354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK--DIAPASILNTYETERKPIAEFNTALSVQNFRAA  431 (455)
Q Consensus       354 ~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~--~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~  431 (455)
                      |.  .+||+|||||||.|+|++|||+|+||+||..|+++|.....  +....++|+.|+++|++++..++..++.....+
T Consensus       277 ~~--~~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~~~~~~~~~l~~Ye~~R~~~~~~~~~~~~~~~~~~  354 (388)
T PRK07608        277 LV--APRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFRDLGDLRLLRRYERARREDILALQVATDGLQRLF  354 (388)
T ss_pred             hh--cCceEEEeccccccCCccccccchhHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65  48999999999999999999999999999999999987642  222358999999999999999999988777766


Q ss_pred             hc
Q 012845          432 ME  433 (455)
Q Consensus       432 ~~  433 (455)
                      +.
T Consensus       355 ~~  356 (388)
T PRK07608        355 AL  356 (388)
T ss_pred             cC
Confidence            54

>PRK08163 salicylate hydroxylase; Provisional

Probab=100.00  E-value=1.2e-36  Score=305.16  Aligned_cols=348  Identities=21%  Similarity=0.224  Sum_probs=218.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      +++.||+||||||+||++|+.|++.|++|+||||.+.+...++++.|+++++++|+++ |+++.+...+.+...   +.+
T Consensus         2 ~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~l-g~~~~~~~~~~~~~~---~~~   77 (396)
T PRK08163          2 TKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDAL-GVGEAARQRAVFTDH---LTM   77 (396)
T ss_pred             CCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHc-CChHHHHhhccCCcc---eEE
Confidence            4568999999999999999999999999999999998888889999999999999999 999988776544322   222


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                      .....+..+...+...  .+.... ......+.|..|.+.|.+.+.+.+.                  ++++++++|+++
T Consensus        78 ~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~i~r~~l~~~L~~~~~~~~~------------------v~~~~~~~v~~i  136 (396)
T PRK08163         78 MDAVDAEEVVRIPTGQ--AFRARF-GNPYAVIHRADIHLSLLEAVLDHPL------------------VEFRTSTHVVGI  136 (396)
T ss_pred             EeCCCCCEEEEeccch--hHHHhc-CCcEEEEEHHHHHHHHHHHHHhcCC------------------cEEEeCCEEEEE
Confidence            2222333332221110  000000 1123467899999999999987652                  389999999999


Q ss_pred             eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEE
Q 012845          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF  280 (455)
Q Consensus       201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (455)
                      +.+++++.+++.   +|.    ++.+|+||+|||.+|.+|+.+... .........+.............   .......
T Consensus       137 ~~~~~~v~v~~~---~g~----~~~ad~vV~AdG~~S~~r~~~~g~-~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~  205 (396)
T PRK08163        137 EQDGDGVTVFDQ---QGN----RWTGDALIGCDGVKSVVRQSLVGD-APRVTGHVVYRAVIDVDDMPEDL---RINAPVL  205 (396)
T ss_pred             ecCCCceEEEEc---CCC----EEecCEEEECCCcChHHHhhccCC-CCCccccEEEEEEEeHHHCcchh---ccCccEE
Confidence            987777777665   554    789999999999999999988322 11111111111111111111111   1111122


Q ss_pred             EEccCceEEEEeecCCCCe-EEEEeecCCCC--CC-CCCCCHHHHHHHHHHhhCCCCCCeeEEE----eeceEec-eeee
Q 012845          281 IFNTEAIGVLVAHDLKEGE-FILQVPFYPPQ--QN-LEDFSPEICEKLIFKLVGWELSDIDVID----IKPWVMH-AEVA  351 (455)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~-~~~~  351 (455)
                      ...++...+.  ++...+. +.+.+....+.  .. ....+.+.+.+.+   .++.+....++.    ...+... ....
T Consensus       206 ~~g~~~~~~~--~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (396)
T PRK08163        206 WAGPHCHLVH--YPLRGGEQYNLVVTFHSREQEEWGVKDGSKEEVLSYF---EGIHPRPRQMLDKPTSWKRWATADREPV  280 (396)
T ss_pred             EEcCCceEEE--EEecCCeEEEEEEEECCCCCcccccCCCCHHHHHHHH---cCCChHHHHHHhcCCceeEccccCCCcc
Confidence            2233333333  3333333 22222221111  11 1111222222222   222211111110    0111111 1233


Q ss_pred             cccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHH
Q 012845          352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA  431 (455)
Q Consensus       352 ~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~  431 (455)
                      +.|.  .+||+|||||||.|+|+.|||+|+||+||..|+++|...  ..+...+|+.|++.|++++..++..++.....+
T Consensus       281 ~~~~--~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~--~~~~~~al~~y~~~R~~r~~~~~~~s~~~~~~~  356 (396)
T PRK08163        281 AKWS--TGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALEGC--DGDAEAAFALYESVRIPRTARVVLSAREMGRIY  356 (396)
T ss_pred             cccc--cCcEEEEecccccCCcchhccHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence            4554  489999999999999999999999999999999999752  334678999999999999999999999877766


Q ss_pred             hc
Q 012845          432 ME  433 (455)
Q Consensus       432 ~~  433 (455)
                      +.
T Consensus       357 ~~  358 (396)
T PRK08163        357 HA  358 (396)
T ss_pred             CC
Confidence            53

>PRK06847 hypothetical protein; Provisional

Probab=100.00  E-value=5.6e-36  Score=298.16  Aligned_cols=340  Identities=20%  Similarity=0.226  Sum_probs=221.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      .+..||+||||||+||++|+.|++.|++|+||||.+.+...+.+..+++++++.|+++ |+.+.+.+.+.+...+.   +
T Consensus         2 ~~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~-gl~~~~~~~~~~~~~~~---~   77 (375)
T PRK06847          2 AAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALREL-GVLDECLEAGFGFDGVD---L   77 (375)
T ss_pred             CCcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHc-CCHHHHHHhCCCccceE---E
Confidence            3467999999999999999999999999999999998887888999999999999999 99998887665543221   1


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                      . +..|..+...+......  ..  ......+.|..|.+.|.+.+.+.|+                   +++++++|+++
T Consensus        78 ~-~~~g~~~~~~~~~~~~~--~~--~~~~~~i~r~~l~~~L~~~~~~~gv-------------------~v~~~~~v~~i  133 (375)
T PRK06847         78 F-DPDGTLLAELPTPRLAG--DD--LPGGGGIMRPALARILADAARAAGA-------------------DVRLGTTVTAI  133 (375)
T ss_pred             E-CCCCCEEEecCcccccc--cC--CCCcccCcHHHHHHHHHHHHHHhCC-------------------EEEeCCEEEEE
Confidence            1 23444333222110000  00  0123568899999999999988886                   89999999999


Q ss_pred             eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhc-CCCccCCcccceeEEEEEecCCcccccccCCCceEE
Q 012845          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLV-GIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF  279 (455)
Q Consensus       201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (455)
                      +.+++.+.+.+.   +|+    ++.+|+||+|||.+|.+|+++ +.... ..+..............      ..... .
T Consensus       134 ~~~~~~~~v~~~---~g~----~~~ad~vI~AdG~~s~~r~~l~~~~~~-~~~~g~~~~~~~~~~~~------~~~~~-~  198 (375)
T PRK06847        134 EQDDDGVTVTFS---DGT----TGRYDLVVGADGLYSKVRSLVFPDEPE-PEYTGQGVWRAVLPRPA------EVDRS-L  198 (375)
T ss_pred             EEcCCEEEEEEc---CCC----EEEcCEEEECcCCCcchhhHhcCCCCC-ceeccceEEEEEecCCC------Cccce-E
Confidence            987777777665   664    789999999999999999988 32211 11111111111111110      01111 2


Q ss_pred             EEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhC-CCCCCe----eEE----EeeceEece-e
Q 012845          280 FIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVG-WELSDI----DVI----DIKPWVMHA-E  349 (455)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~----~~~----~~~~~~~~~-~  349 (455)
                      ....++....+  ++...+...+.+....+..  ..++.+.+.+.+.+.+. +.....    +..    ....+++.. .
T Consensus       199 ~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (375)
T PRK06847        199 MYLGPTTKAGV--VPLSEDLMYLFVTEPRPDN--PRIEPDTLAALLRELLAPFGGPVLQELREQITDDAQVVYRPLETLL  274 (375)
T ss_pred             EEeCCCcEEEE--EcCCCCeEEEEEeccCccc--ccCChHHHHHHHHHHHhhcCchHHHHHHHhcCCccceeeccHhhcc
Confidence            22333333322  3444343333322221111  12333333344443322 111000    000    111122222 1


Q ss_pred             eecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHH
Q 012845          350 VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR  429 (455)
Q Consensus       350 ~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~  429 (455)
                      ...+|.  .+||+|||||||.|+|+.|||+|+||+||..|+++|.+   .....++|+.|++.|+++++.++..|+.+-.
T Consensus       275 ~~~~~~--~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~---~~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~  349 (375)
T PRK06847        275 VPAPWH--RGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELAR---HDSLEAALQAYYARRWERCRMVVEASARIGR  349 (375)
T ss_pred             CCCCcc--CCeEEEEechhccCCCCccccHHHHHHHHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            223454  49999999999999999999999999999999999975   3456789999999999999999999998776


Q ss_pred             HHh
Q 012845          430 AAM  432 (455)
Q Consensus       430 ~~~  432 (455)
                      ..+
T Consensus       350 ~~~  352 (375)
T PRK06847        350 IEI  352 (375)
T ss_pred             eec
Confidence            544

>PRK05868 hypothetical protein; Validated

Probab=100.00  E-value=3.7e-36  Score=298.00  Aligned_cols=342  Identities=17%  Similarity=0.169  Sum_probs=212.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEeec
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~~  123 (455)
                      .||+||||||+|+++|+.|+++|++|+||||.+.+...+.++.+.+++++.|+++ |+++.+.+.+.+...   ..+. +
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~l-Gl~~~~~~~~~~~~~---~~~~-~   76 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERM-GLLAAAQEHKTRIRG---ASFV-D   76 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhc-CCHHHHHhhccCccc---eEEE-e
Confidence            3899999999999999999999999999999988877778888999999999999 999998776654432   1121 2


Q ss_pred             CCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeec
Q 012845          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (455)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~  203 (455)
                      .+|..+........  ..... ......+.|..|.+.|.+.+ ..|+                   +++++++|++++.+
T Consensus        77 ~~g~~~~~~~~~~~--~~~~~-~~~~~~i~R~~L~~~l~~~~-~~~v-------------------~i~~~~~v~~i~~~  133 (372)
T PRK05868         77 RDGNELFRDTESTP--TGGPV-NSPDIELLRDDLVELLYGAT-QPSV-------------------EYLFDDSISTLQDD  133 (372)
T ss_pred             CCCCEEeecccccc--cCCCC-CCceEEEEHHHHHHHHHHhc-cCCc-------------------EEEeCCEEEEEEec
Confidence            33433322111000  00000 11123567888888776543 3344                   89999999999887


Q ss_pred             CCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccC-CcccceeEEEEEecCCcccccccCCCceEEEEE
Q 012845          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVG-EKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF  282 (455)
Q Consensus       204 ~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (455)
                      ++.+.+++.   +|+    ++++|+||+|||.+|.+|+++...... ...+..+. ..+.....   .  .......+..
T Consensus       134 ~~~v~v~~~---dg~----~~~adlvIgADG~~S~vR~~~~~~~~~~~~~~g~~~-~~~~~~~~---~--~~~~~~~~~~  200 (372)
T PRK05868        134 GDSVRVTFE---RAA----AREFDLVIGADGLHSNVRRLVFGPEEQFVKRLGTHA-AIFTVPNF---L--ELDYWQTWHY  200 (372)
T ss_pred             CCeEEEEEC---CCC----eEEeCEEEECCCCCchHHHHhcCCcccceeecceEE-EEEEcCCC---C--CCCcceEEEe
Confidence            787877776   665    679999999999999999998432211 11111111 11111111   1  1122222233


Q ss_pred             ccCceEEEEeecCCCC-eEEEEeecCCCCCCCCCCCHHHHHHHHHHhh---CCCCCC-eeEEE-eece--E-eceeeecc
Q 012845          283 NTEAIGVLVAHDLKEG-EFILQVPFYPPQQNLEDFSPEICEKLIFKLV---GWELSD-IDVID-IKPW--V-MHAEVAEK  353 (455)
Q Consensus       283 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~-~~~~~-~~~~--~-~~~~~~~~  353 (455)
                      .++....+++...... ...+.+.....  .......+...+.+.+.+   +|.... .+.+. ...+  + +.....+.
T Consensus       201 g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~f~~~~w~~~~l~~~~~~~~~~~~~~~~~~~~~~  278 (372)
T PRK05868        201 GDSTMAGVYSARNNTEARAALAFMDTEL--RIDYRDTEAQFAELQRRMAEDGWVRAQLLHYMRSAPDFYFDEMSQILMDR  278 (372)
T ss_pred             cCCcEEEEEecCCCCceEEEEEEecCCc--ccccCChHHHHHHHHHHHhhCCCchHHHHhhcccCCceeeccceEEecCC
Confidence            4444333333322222 11122111110  111111222233333333   343111 11111 1111  1 22233455


Q ss_pred             cccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHh
Q 012845          354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAM  432 (455)
Q Consensus       354 ~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~  432 (455)
                      |.  .+||+|||||||+|+|+.|||+|+||+||.+|+++|.+.  ..+...+|+.|++.+++++...+.........+.
T Consensus       279 w~--~grv~LvGDAAH~~~P~~GqGa~~AleDa~~La~~L~~~--~~~~~~al~~ye~~~~~~~~~~q~~~~~~~~~~~  353 (372)
T PRK05868        279 WS--RGRVALVGDAGYCCSPLSGQGTSVALLGAYILAGELKAA--GDDYQLGFANYHAEFHGFVERNQWLVSDNIPGGA  353 (372)
T ss_pred             CC--CCCeeeeecccccCCCccCccHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHhHHHHHhhhhhhccCCccc
Confidence            55  499999999999999999999999999999999999763  3357899999999999998888887766555544

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=100.00  E-value=4.4e-36  Score=301.01  Aligned_cols=343  Identities=19%  Similarity=0.300  Sum_probs=224.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCCCC-----CCCCcccccChhHHHHHHhhhchHHHHHhcCCCcc
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKAF-----STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVD  113 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~---g~~V~l~Er~~~~-----~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~  113 (455)
                      +++||+||||||+|+++|+.|+++   |++|+||||....     ....++..+++++++.|+++ |+++.+...+.+..
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l-gl~~~~~~~~~~~~   80 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARL-GVWQALADCATPIT   80 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHC-CChhhhHhhcCCcc
Confidence            568999999999999999999998   9999999996322     22346889999999999999 99999987665543


Q ss_pred             cccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhc-ccccccCCCcccccccccccceEE
Q 012845          114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREIL  192 (455)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~  192 (455)
                      ...   +. . .+.. ..... ...+.   ..+.....+.|..|.+.|.+.+.+. |+                   +++
T Consensus        81 ~~~---~~-~-~~~~-~~~~~-~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~g~-------------------~~~  131 (395)
T PRK05732         81 HIH---VS-D-RGHA-GFVRL-DAEDY---GVPALGYVVELHDVGQRLFALLDKAPGV-------------------TLH  131 (395)
T ss_pred             EEE---Ee-c-CCCC-ceEEe-ehhhc---CCCccEEEEEhHHHHHHHHHHHhcCCCc-------------------EEE
Confidence            211   11 1 1110 00000 00000   0111234578889999999988764 44                   899


Q ss_pred             eccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCccccccc
Q 012845          193 MGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLN  272 (455)
Q Consensus       193 ~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (455)
                      ++++|+++..+++++.+++.   ++.    .+.+|+||+|||.+|.+|+.++.......+.+..+...+.....      
T Consensus       132 ~~~~v~~i~~~~~~~~v~~~---~g~----~~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~------  198 (395)
T PRK05732        132 CPARVANVERTQGSVRVTLD---DGE----TLTGRLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEA------  198 (395)
T ss_pred             cCCEEEEEEEcCCeEEEEEC---CCC----EEEeCEEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecCC------
Confidence            99999999887887777765   554    68999999999999999999986654433333333222221111      


Q ss_pred             CCCceEEEEEccCceEEEEeecCCCCeE--EEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCee-EEEeeceEecee
Q 012845          273 ERPGMLFFIFNTEAIGVLVAHDLKEGEF--ILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDID-VIDIKPWVMHAE  349 (455)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~  349 (455)
                       .....+..+.+.+...+++  ...+.+  .|..+... ......++.+.+.+.+.+.+++...... ......|++...
T Consensus       199 -~~~~~~~~~~~~g~~~~~p--~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  274 (395)
T PRK05732        199 -HQGRAFERFTEHGPLALLP--MSDGRCSLVWCHPLED-AEEVLSWSDAQFLAELQQAFGWRLGRITHAGKRSAYPLALV  274 (395)
T ss_pred             -CCCEEEEeecCCCCEEEeE--CCCCCeEEEEECCHHH-HHHHHcCCHHHHHHHHHHHHHhhhcceeecCCcceeccccc
Confidence             1112222233444333333  334443  33322111 1112234444455555555544322221 112233444444


Q ss_pred             eecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCC-C--CchhhhhHHHhhhHHHHHhHHhHHH
Q 012845          350 VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI-A--PASILNTYETERKPIAEFNTALSVQ  426 (455)
Q Consensus       350 ~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~-~--~~~al~~Y~~~r~~~~~~~~~~s~~  426 (455)
                      ..+.|.  .+|++|+|||||.++|++|||+|+||+||..|+++|...+++. +  ...+|+.|+++|+++...++..++.
T Consensus       275 ~~~~~~--~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~  352 (395)
T PRK05732        275 TAAQQI--SHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQDREATIGFTDG  352 (395)
T ss_pred             chhhhc--cCcEEEEeecccccCCccccccchHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445554  4999999999999999999999999999999999998776432 2  3479999999999999999999988


Q ss_pred             HHHHHhc
Q 012845          427 NFRAAME  433 (455)
Q Consensus       427 ~~~~~~~  433 (455)
                      ..+.+..
T Consensus       353 ~~~~~~~  359 (395)
T PRK05732        353 LVRLFAN  359 (395)
T ss_pred             HHHHHcC
Confidence            8776654

>PRK07236 hypothetical protein; Provisional

Probab=100.00  E-value=8e-36  Score=297.85  Aligned_cols=338  Identities=14%  Similarity=0.119  Sum_probs=203.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC-CCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~-~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~  119 (455)
                      ++..+|+||||||+||++|+.|++.|++|+||||.+.+ ...+.++.+.++++++|+++ |+.+.. ..+.+...   . 
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~l-g~~~~~-~~~~~~~~---~-   77 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEA-GVALPA-DIGVPSRE---R-   77 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHc-CCCccc-ccccCccc---e-
Confidence            45689999999999999999999999999999998754 34566788999999999999 987654 33333211   1 


Q ss_pred             EeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEE
Q 012845          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (455)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~  199 (455)
                      ......|..+...+             .....+.+..|.+.|.+.+.                     +..++++++|++
T Consensus        78 ~~~~~~g~~~~~~~-------------~~~~~~~~~~l~~~L~~~~~---------------------~~~i~~~~~v~~  123 (386)
T PRK07236         78 IYLDRDGRVVQRRP-------------MPQTQTSWNVLYRALRAAFP---------------------AERYHLGETLVG  123 (386)
T ss_pred             EEEeCCCCEeeccC-------------CCccccCHHHHHHHHHHhCC---------------------CcEEEcCCEEEE
Confidence            11123343332111             01122456677777765432                     247999999999


Q ss_pred             eeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecC-CcccccccCCCceE
Q 012845          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSK-DLGDYLLNERPGML  278 (455)
Q Consensus       200 i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  278 (455)
                      ++.+++++.+++.   +|+    ++++|+||+|||.+|.+|+++... ....+............ ..............
T Consensus       124 i~~~~~~v~v~~~---~g~----~~~ad~vIgADG~~S~vR~~l~~~-~~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~  195 (386)
T PRK07236        124 FEQDGDRVTARFA---DGR----RETADLLVGADGGRSTVRAQLLPD-VRPTYAGYVAWRGLVDEAALPPEARAALRDRF  195 (386)
T ss_pred             EEecCCeEEEEEC---CCC----EEEeCEEEECCCCCchHHHHhCCC-CCCCcCCeEEEEEecchHHcCchhhhhcccce
Confidence            9988888877776   665    789999999999999999998322 22222222111111111 11110000011122


Q ss_pred             EEEEccCceEEEEeecCCC-------C--eEEEEeecCCCCC---CC--------------CCCCHHHHHHHHHHhh-C-
Q 012845          279 FFIFNTEAIGVLVAHDLKE-------G--EFILQVPFYPPQQ---NL--------------EDFSPEICEKLIFKLV-G-  330 (455)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~~---~~--------------~~~~~~~~~~~l~~~~-~-  330 (455)
                      .+...++.....+..+...       .  .+.|..+......   .+              ....++.. +.+.+.. . 
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~  274 (386)
T PRK07236        196 TFQLGPGSHILGYPVPGEDGSTEPGKRRYNWVWYRNAPAGEELDELLTDRDGTRRPFSVPPGALRDDVL-AELRDDAAEL  274 (386)
T ss_pred             EEEEcCCceEEEEECCCCCCCcCCCCcEEEEEEEecCCCccchhhhcccCCCccccCCCCccccCHHHH-HHHHHHHHHh
Confidence            2223344333333333211       1  2333333222100   00              00112222 2222211 1 


Q ss_pred             CCCCCeeEEE----eeceEeceeeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhh
Q 012845          331 WELSDIDVID----IKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASIL  406 (455)
Q Consensus       331 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al  406 (455)
                      +.+...+++.    ...+++.....+.|.  .+|++|||||||.|+|+.|||+|+||+||..|+++|...  ..+...+|
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~--~~~~~~al  350 (386)
T PRK07236        275 LAPVFAELVEATAQPFVQAIFDLEVPRMA--FGRVALLGDAAFVARPHTAAGVAKAAADAVALAEALAAA--AGDIDAAL  350 (386)
T ss_pred             cCHHHHHHHhhCcCchhhhhhcccCcccc--cCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhc--ccchHHHH
Confidence            1110111100    011222222234444  499999999999999999999999999999999999764  23367999


Q ss_pred             hhHHHhhhHHHHHhHHhHHHHHHHH
Q 012845          407 NTYETERKPIAEFNTALSVQNFRAA  431 (455)
Q Consensus       407 ~~Y~~~r~~~~~~~~~~s~~~~~~~  431 (455)
                      +.|++.|+++++.++..|+..-...
T Consensus       351 ~~Ye~~R~~r~~~~~~~s~~~~~~~  375 (386)
T PRK07236        351 AAWEAERLAVGAAIVARGRRLGARL  375 (386)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998665544

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=100.00  E-value=4.8e-36  Score=302.24  Aligned_cols=347  Identities=19%  Similarity=0.273  Sum_probs=212.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCc-ccccce--E
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPV-DLWRKF--I  119 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g-~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~-~~~~~~--~  119 (455)
                      .+|+||||||+||++|+.|+++| ++|+||||.+.....+.++.|.++++++|+++ |+.+.+...+... ..+...  .
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~l-g~~~~~~~~~~~~~~~~~~~~~~   79 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGL-GLGEAYTQVADSTPAPWQDIWFE   79 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHc-CChhHHHHHhcCCCccCcceeEE
Confidence            36999999999999999999998 69999999998888888999999999999999 9988887654221 111111  1


Q ss_pred             EeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEE
Q 012845          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (455)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~  199 (455)
                      +.....+.....   ..       ........+.|..|.+.|.+.+..                     ..++++++|++
T Consensus        80 ~~~~~~~~~~~~---~~-------~~~~~~~~i~R~~l~~~L~~~~~~---------------------~~v~~~~~v~~  128 (414)
T TIGR03219        80 WRNGSDASYLGA---TI-------APGVGQSSVHRADFLDALLKHLPE---------------------GIASFGKRATQ  128 (414)
T ss_pred             EEecCccceeee---ec-------cccCCcccCCHHHHHHHHHHhCCC---------------------ceEEcCCEEEE
Confidence            111111111110   00       001112357899999999887643                     26889999999


Q ss_pred             eeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCC----ccCCcccceeEEEEEe-cCCcccc-----
Q 012845          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGID----LVGEKDLQKLVSVHFL-SKDLGDY-----  269 (455)
Q Consensus       200 i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~----~~~~~~~~~~~~~~~~-~~~~~~~-----  269 (455)
                      ++..++++.+++.   +|+    ++++|+||+|||.+|.||+.+...    .....+.......... .......     
T Consensus       129 i~~~~~~~~v~~~---~g~----~~~ad~vVgADG~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~  201 (414)
T TIGR03219       129 IEEQAEEVQVLFT---DGT----EYRCDLLIGADGIKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAG  201 (414)
T ss_pred             EEecCCcEEEEEc---CCC----EEEeeEEEECCCccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhcccc
Confidence            9988888878776   665    789999999999999999988321    1111111111111111 1111000     


Q ss_pred             cccCCCceEEEEEccCceEEEEeecCCCCeEE-EEeecCCCCC------CCCCCCH-HHHHHHHHHhhCCCCCCeeEE--
Q 012845          270 LLNERPGMLFFIFNTEAIGVLVAHDLKEGEFI-LQVPFYPPQQ------NLEDFSP-EICEKLIFKLVGWELSDIDVI--  339 (455)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~-~~~~~~l~~~~~~~~~~~~~~--  339 (455)
                      ..........+...+++...++  +...+... +......+..      .-..+.. ....++++.+.+|.+...+++  
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~--p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~  279 (414)
T TIGR03219       202 LDEHLVDVPQMYLGLDGHILTF--PVRQGRLINVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARALLEC  279 (414)
T ss_pred             ccccccccceEEEcCCCeEEEE--ECCCCcEEEEEEEEcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHHHHh
Confidence            0000111112223444433333  33333322 2211111110      0011211 112223333222221111100  


Q ss_pred             --EeeceEece-eeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhH-cCCCCchhhhhHHHhhhH
Q 012845          340 --DIKPWVMHA-EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL-KDIAPASILNTYETERKP  415 (455)
Q Consensus       340 --~~~~~~~~~-~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~-~~~~~~~al~~Y~~~r~~  415 (455)
                        ....|.+.. ...+.|.  .+||+|||||||.|.|+.|||+|+||+||..|+++|.... ++.+...+|+.|++.|++
T Consensus       280 ~~~~~~~~~~~~~~~~~w~--~grv~LiGDAAH~m~P~~GqGa~~AieDA~~La~~L~~~~~~~~~~~~al~~Ye~~R~~  357 (414)
T TIGR03219       280 IPAPTLWALHDLAELPGYV--HGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAGDLPALLEAYDDVRRP  357 (414)
T ss_pred             CCCCCceeeeeccccccee--eCcEEEEEcccCCCCCCcCcchHhHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHhH
Confidence              111233322 2334555  4999999999999999999999999999999999998753 234567999999999999


Q ss_pred             HHHHhHHhHHHHHHHHhc
Q 012845          416 IAEFNTALSVQNFRAAME  433 (455)
Q Consensus       416 ~~~~~~~~s~~~~~~~~~  433 (455)
                      ++.++++.|+......+.
T Consensus       358 r~~~~~~~s~~~~~~~~~  375 (414)
T TIGR03219       358 RACRVQRTSREAGELYEL  375 (414)
T ss_pred             HHHHHHHHHHHHHHHhcC
Confidence            999999999988776653

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=2.6e-36  Score=285.38  Aligned_cols=337  Identities=20%  Similarity=0.208  Sum_probs=199.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      +.+|+|||||++||++|++|.|.|++|+|||++..++..+.++.+.-+++++|+.+ |+.+.+.+.+.|...+.   ..+
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai-~~~e~i~~~gip~~~~v---~~~   77 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAI-GLKEQIREQGIPLGGRV---LIH   77 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHc-ccHHHHHHhcCccccee---eee
Confidence            46899999999999999999999999999999988888888888888899999999 99999999888875432   344


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEecc------E
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH------E  196 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~------~  196 (455)
                      ..+|+...+.....+.+        ....+.|..+...++..+...+                    .|+++.      .
T Consensus        78 ~~sg~~~~~~~~~~~~~--------~i~r~~~r~ll~~lL~~a~~~~--------------------~ikf~~~~~~~~~  129 (420)
T KOG2614|consen   78 GDSGKEVSRILYGEPDE--------YILRINRRNLLQELLAEALPTG--------------------TIKFHSNLSCTSK  129 (420)
T ss_pred             cCCCCeeEecccCCchH--------HHHHHHHHHHHHHHHHhhcCCC--------------------eeecccccccccc
Confidence            55666655543332221        1234445455444444444443                    455553      4


Q ss_pred             EEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCccc--ccccCC
Q 012845          197 CVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGD--YLLNER  274 (455)
Q Consensus       197 v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  274 (455)
                      ...++.......+++.   +|.    ++++|++|||||++|.||++++.....+..++.+....+.....+.  ......
T Consensus       130 ~~~~~~~~~~~~v~l~---~g~----~~~~dlligCDGa~S~Vr~~l~~~~p~~~~~~ayrg~~~~~~~~~~~~~vf~~~  202 (420)
T KOG2614|consen  130 DVEIETLGKKLVVHLS---DGT----TVKGDLLIGCDGAYSKVRKWLGFKEPRYDGSQAYRGLGFIPNGIPFGKKVFAIY  202 (420)
T ss_pred             cceeeecccccceecC---CCc----EEEeeEEEEcCchHHHHHHHhcccCCcceeEEEEeeeeeccCCCCcccceeccc
Confidence            4445544455556655   675    8899999999999999999998665555566665555554443322  111122


Q ss_pred             CceEEEEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHH---HHHhhCCCC----CCeeEEEeeceEec
Q 012845          275 PGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKL---IFKLVGWEL----SDIDVIDIKPWVMH  347 (455)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~----~~~~~~~~~~~~~~  347 (455)
                      ++..+....+......+.+......+.+..++..++.... ...+....+   +...+....    ....+....+|++-
T Consensus       203 ~~~~~~~~~~~~~~~~y~~~~k~~t~t~~~~~~e~~~l~~-~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r~p~~~i  281 (420)
T KOG2614|consen  203 GNGLHSWPRPGFHLIAYWFLDKSLTSTDFAPFDEPEKLKK-TSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPLI  281 (420)
T ss_pred             CCeEEEcccCCceEEEEEeecCCcccccccCcCCHHHHhh-hHHHHHHHhHHhHHHHHHhcChHHhhhchhhhcCCcCee
Confidence            2233322222222222222111222222222222222211 111111111   111111110    01111122233322


Q ss_pred             eeeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHH
Q 012845          348 AEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQN  427 (455)
Q Consensus       348 ~~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~  427 (455)
                      ...+.     .++|||+|||||+|.|+.|||+|+|+||+.+|+++|.++.++  ...+++.|++  .+...++.+.+...
T Consensus       282 ~~~~s-----~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~d--~s~~~~~~s~--~~e~~~~ie~a~~~  352 (420)
T KOG2614|consen  282 SVKCS-----PGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAIND--VSLAGEEYSR--ENESHAIIELAMYS  352 (420)
T ss_pred             eeccC-----CCeEEEecccccccCCcccccccchHHHHHHHHHHHHHhccc--hhccccceec--ccchhHHHHHHHHH
Confidence            11111     369999999999999999999999999999999999998653  3444455554  33333334433333


Q ss_pred             H
Q 012845          428 F  428 (455)
Q Consensus       428 ~  428 (455)
                      |
T Consensus       353 Y  353 (420)
T KOG2614|consen  353 Y  353 (420)
T ss_pred             H
Confidence            3

>PLN02985 squalene monooxygenase

Probab=100.00  E-value=1.6e-35  Score=302.89  Aligned_cols=341  Identities=17%  Similarity=0.152  Sum_probs=210.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCC-CcccccceE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQP-PVDLWRKFI  119 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~-~~~~~~~~~  119 (455)
                      ...+||+||||||+|+++|+.|++.|++|+|+||.+.......+..+++++.+.|+++ |+++.+..... +.   ..+.
T Consensus        41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~L-Gl~d~l~~~~~~~~---~~~~  116 (514)
T PLN02985         41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKL-GLEDCLEGIDAQKA---TGMA  116 (514)
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHc-CCcchhhhccCccc---ccEE
Confidence            4578999999999999999999999999999999876556677899999999999999 99998876432 22   2222


Q ss_pred             EeecCCCCcc-ccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEE
Q 012845          120 YCTSVTGPIL-GSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV  198 (455)
Q Consensus       120 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~  198 (455)
                      ...  +|... ..++.. ....   ........+.|..|.+.|++.+.+.+.                  ++++.+ +++
T Consensus       117 v~~--~g~~~~~~~~~~-~~~~---~~~~~g~~i~r~~l~~~L~~~a~~~~~------------------V~i~~g-tvv  171 (514)
T PLN02985        117 VYK--DGKEAVAPFPVD-NNNF---PYEPSARSFHNGRFVQRLRQKASSLPN------------------VRLEEG-TVK  171 (514)
T ss_pred             EEE--CCEEEEEeCCCC-CcCC---CcccceeeeecHHHHHHHHHHHHhCCC------------------eEEEee-eEE
Confidence            211  23221 111100 0000   011223567899999999999987642                  377755 567


Q ss_pred             EeeecCCce-EEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCc-ccceeEEEEEecCCcccccccCCCc
Q 012845          199 SVSATDQCI-NVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEK-DLQKLVSVHFLSKDLGDYLLNERPG  276 (455)
Q Consensus       199 ~i~~~~~~~-~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  276 (455)
                      ++..+++.+ .|++.. .+|.  +.++.+|+||+|||.+|.+|++++....... +...+.     ....    ....++
T Consensus       172 ~li~~~~~v~gV~~~~-~dG~--~~~~~AdLVVgADG~~S~vR~~l~~~~~~~~s~~~~~~-----~~~~----~~~~~~  239 (514)
T PLN02985        172 SLIEEKGVIKGVTYKN-SAGE--ETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGYI-----SKNC----RLEEPE  239 (514)
T ss_pred             EEEEcCCEEEEEEEEc-CCCC--EEEEECCEEEECCCCchHHHHHhccCCCcceeEeEEEE-----Eccc----cCCCCC
Confidence            665554432 344441 1332  3467899999999999999999975433211 111111     1111    011233


Q ss_pred             eEEEEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHH------------HHHHHHhhC--CCCCCeeEEEee
Q 012845          277 MLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEIC------------EKLIFKLVG--WELSDIDVIDIK  342 (455)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~l~~~~~--~~~~~~~~~~~~  342 (455)
                      ..+.++.+.....++.......++.+.++....    ...+....            .+.+++.+.  +... .++..  
T Consensus       240 ~~~~~~~~~~~~l~ypi~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~-~~~~~--  312 (514)
T PLN02985        240 KLHLIMSKPSFTMLYQISSTDVRCVFEVLPDNI----PSIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEG-AHIKV--  312 (514)
T ss_pred             cceEEcCCCceEEEEEeCCCeEEEEEEEeCCCC----CCcChhhHHHHHHhccccccCHHHHHHHHhhcccc-cceee--
Confidence            334444454444444443333333344432211    11111111            112222221  1111 11111  


Q ss_pred             ceEeceeeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhH---cCCCCchhhhhHHHhhhHHHHH
Q 012845          343 PWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL---KDIAPASILNTYETERKPIAEF  419 (455)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~---~~~~~~~al~~Y~~~r~~~~~~  419 (455)
                       ++........+  ..++++|||||||+|+|++|||||+|++||.+|++.|.+..   +.....++|+.|++.|++++..
T Consensus       313 -~p~~~l~~~~~--~~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~y~~~Rk~r~~~  389 (514)
T PLN02985        313 -VPTKRMSATLS--DKKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPMSAT  389 (514)
T ss_pred             -cCccccccccc--CCCCEEEEecccccCCCCccccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhhcchhH
Confidence             11111111122  24899999999999999999999999999999999998642   1123468999999999999999


Q ss_pred             hHHhHHHHHHHHh
Q 012845          420 NTALSVQNFRAAM  432 (455)
Q Consensus       420 ~~~~s~~~~~~~~  432 (455)
                      ++.+|+.+|..+.
T Consensus       390 i~~la~al~~~f~  402 (514)
T PLN02985        390 VNTLGNAFSQVLV  402 (514)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999774

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=100.00  E-value=6.6e-35  Score=300.85  Aligned_cols=359  Identities=18%  Similarity=0.211  Sum_probs=217.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC-CCCC---cccccChhHHHHHHhhhch--HHHHHhcCCCccc
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-STHP---QAHFINNRYALVFRKLDGL--AEEIERSQPPVDL  114 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~-~~~~---~~~~l~~~~~~~l~~~~gl--~~~l~~~~~~~~~  114 (455)
                      .++++|+||||||+||++|+.|+++|++|+||||.+.. ...+   +++.|.++++++|+++ |+  .+++.+.+.....
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~L-Gl~~~e~l~~~g~~~~~  157 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAI-DIDVAEQVMEAGCITGD  157 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHc-CcchHHHHHhhcCcccc
Confidence            56789999999999999999999999999999998632 2222   4688999999999999 74  5666665543211


Q ss_pred             ccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEec
Q 012845          115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG  194 (455)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~  194 (455)
                      .. ..+.....|.....++......  . ........+.|..|.+.|.+.+..                     ..++++
T Consensus       158 ~i-~~~~d~~~G~~~~~~~~~~~~~--~-~g~p~~~~I~R~~L~~~L~~alg~---------------------~~i~~g  212 (668)
T PLN02927        158 RI-NGLVDGISGSWYVKFDTFTPAA--S-RGLPVTRVISRMTLQQILARAVGE---------------------DVIRNE  212 (668)
T ss_pred             ee-eeeeecCCCceEeecccccccc--c-cCCCeEEEEeHHHHHHHHHhhCCC---------------------CEEEcC
Confidence            00 0011112333222222111100  0 001124568999999999775432                     257899


Q ss_pred             cEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCC
Q 012845          195 HECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNER  274 (455)
Q Consensus       195 ~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (455)
                      ++|++++..++.+.+++.   +|+    ++++|+||+|||++|.+|+.+..... .. +..+..+.........   ...
T Consensus       213 ~~V~~I~~~~d~VtV~~~---dG~----ti~aDlVVGADG~~S~vR~~l~g~~~-~~-~sG~~~~rgi~~~~p~---~~~  280 (668)
T PLN02927        213 SNVVDFEDSGDKVTVVLE---NGQ----RYEGDLLVGADGIWSKVRNNLFGRSE-AT-YSGYTCYTGIADFIPA---DIE  280 (668)
T ss_pred             CEEEEEEEeCCEEEEEEC---CCC----EEEcCEEEECCCCCcHHHHHhcCCCC-Cc-ccceEEEEEEcCCCcc---ccc
Confidence            999999988888887776   664    67999999999999999999832221 11 2222221111111110   001


Q ss_pred             CceEEEEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEE------eeceEece
Q 012845          275 PGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID------IKPWVMHA  348 (455)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~~  348 (455)
                      ........++..  .++..+...+...|......+.... +......+++.+.+-+|.....+++.      ...+.+..
T Consensus       281 ~~~~~~~~G~~~--~~v~~~v~~g~~~~~~f~~~p~~~~-~~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~iyd  357 (668)
T PLN02927        281 SVGYRVFLGHKQ--YFVSSDVGGGKMQWYAFHEEPAGGA-DAPNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDIYD  357 (668)
T ss_pred             ccceEEEEcCCe--EEEEEcCCCCeEEEEEEEECCcccc-ccchhHHHHHHHHhccCCHHHHHHHHhCccccceeeeEEe
Confidence            111112222222  2333344444444433222111110 11111222222222233222111111      11233332


Q ss_pred             e-eecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcC-------CCCchhhhhHHHhhhHHHHHh
Q 012845          349 E-VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD-------IAPASILNTYETERKPIAEFN  420 (455)
Q Consensus       349 ~-~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~-------~~~~~al~~Y~~~r~~~~~~~  420 (455)
                      . ....|.  .+||+|+|||||.|+|+.|||+|+||+||..|+.+|.++.+.       .+...+|+.|++.|++++..+
T Consensus       358 ~~p~~~W~--~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~rv~~i  435 (668)
T PLN02927        358 RSPGFTWG--KGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRRLRVAII  435 (668)
T ss_pred             ccCCCccc--cCcEEEEcCccCCCCCccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHHHHHHHH
Confidence            2 222443  599999999999999999999999999999999999886532       235689999999999999999


Q ss_pred             HHhHHHHHHHHhccccccC--CCc
Q 012845          421 TALSVQNFRAAMEVPSALG--LDP  442 (455)
Q Consensus       421 ~~~s~~~~~~~~~~~~~~~--~~~  442 (455)
                      +..++....++.....+++  ++|
T Consensus       436 ~~~ar~a~~~~~~~~~y~~~~~~p  459 (668)
T PLN02927        436 HAMARMAAIMASTYKAYLGVGLGP  459 (668)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCH
Confidence            9999999999888887755  544

>PTZ00367 squalene epoxidase; Provisional

Probab=100.00  E-value=1.7e-34  Score=296.61  Aligned_cols=347  Identities=16%  Similarity=0.095  Sum_probs=205.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC-CCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~-~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      ..+||+||||||+|+++|+.|++.|++|+||||.+.. ..+..|..|++++.++|+++ |+++.+.....+...   +.+
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~L-GL~d~l~~i~~~~~~---~~v  107 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKEL-GMEECAEGIGMPCFG---YVV  107 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHC-CChhhHhhcCcceee---eEE
Confidence            4689999999999999999999999999999998622 22456778999999999999 999999877666432   222


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                      . +.+|.... .+..         .......+.+..+.+.|++.+.+...                ++++++ +.+|+++
T Consensus       108 ~-~~~G~~~~-i~~~---------~~~~g~~~~rg~~~~~Lr~~a~~~~~----------------~~V~v~-~~~v~~l  159 (567)
T PTZ00367        108 F-DHKGKQVK-LPYG---------AGASGVSFHFGDFVQNLRSHVFHNCQ----------------DNVTML-EGTVNSL  159 (567)
T ss_pred             E-ECCCCEEE-ecCC---------CCCceeEeEHHHHHHHHHHHHHhhcC----------------CCcEEE-EeEEEEe
Confidence            1 22233221 1110         01123445778888888887721100                123665 4578877


Q ss_pred             eecCCc-----eEEEEEeccCC------------------cceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeE
Q 012845          201 SATDQC-----INVIASFLKEG------------------KCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLV  257 (455)
Q Consensus       201 ~~~~~~-----~~v~~~~~~~g------------------~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~  257 (455)
                      ..++..     ..|++...+.+                  ....+++++|+||+|||.+|.+|++++.......+...+.
T Consensus       160 ~~~~~~~~~~v~gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~  239 (567)
T PTZ00367        160 LEEGPGFSERAYGVEYTEAEKYDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFV  239 (567)
T ss_pred             ccccCccCCeeEEEEEecCCcccccccccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEE
Confidence            554332     12333311100                  0012478999999999999999999975433333333322


Q ss_pred             EEEEecCCcccccccCCCceEEEEEccCceEEEEeecCCCCeEEEEeecCCCCCC-CCCCCHHHH--------HHHHHHh
Q 012845          258 SVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQN-LEDFSPEIC--------EKLIFKL  328 (455)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------~~~l~~~  328 (455)
                      ........      .+.++....++.+++..++++..  .+...+.+.+..+... ..+. .+.+        .+.+++.
T Consensus       240 g~~~~~~~------lp~~~~~~v~~g~~gpi~~yPl~--~~~~r~lv~~~~~~~p~~~~~-~~~l~~~~~p~l~~~l~~~  310 (567)
T PTZ00367        240 GLVLKNVR------LPKEQHGTVFLGKTGPILSYRLD--DNELRVLVDYNKPTLPSLEEQ-SEWLIEDVAPHLPENMRES  310 (567)
T ss_pred             EEEEeccc------CCCCCeeEEEEcCCceEEEEEcC--CCeEEEEEEecCCcCCChHHH-HHHHHHhhcccCcHHHHHH
Confidence            22221111      11233334445666555555443  3433333222211110 0000 0000        1111111


Q ss_pred             hCCCCCCeeEEEeeceEeceeeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHc----CC----
Q 012845          329 VGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK----DI----  400 (455)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~----~~----  400 (455)
                      +........  ....++........+.  .++++|||||||+|+|++|||+|+||+||.+|++.|.....    +.    
T Consensus       311 f~~~l~~~~--~l~~~p~~~~p~~~~~--~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~~d~~  386 (567)
T PTZ00367        311 FIRASKDTK--RIRSMPNARYPPAFPS--IKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQNEMA  386 (567)
T ss_pred             HHHhhcccC--CeEEeeHhhCCCccCC--CCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCchhHH
Confidence            100000000  1112222222222332  48999999999999999999999999999999999975431    11    


Q ss_pred             CCchhhh----hHHHhhhHHHHHhHHhHHHHHHHHhc
Q 012845          401 APASILN----TYETERKPIAEFNTALSVQNFRAAME  433 (455)
Q Consensus       401 ~~~~al~----~Y~~~r~~~~~~~~~~s~~~~~~~~~  433 (455)
                      +...+|+    .|++.|+++...++.+|..+|+.+..
T Consensus       387 ~v~~aL~~~~~~Y~~~Rk~~a~~i~~ls~aL~~lf~~  423 (567)
T PTZ00367        387 EIEDAIQAAILSYARNRKTHASTINILSWALYSVFSS  423 (567)
T ss_pred             HHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHhCh
Confidence            1246677    99999999999999999999987665

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=100.00  E-value=8.3e-31  Score=264.19  Aligned_cols=341  Identities=13%  Similarity=0.113  Sum_probs=199.8

Q ss_pred             cccCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCccccc
Q 012845           37 IVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWR  116 (455)
Q Consensus        37 ~~~~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~  116 (455)
                      .++..+++||+||||||||+++|+.|+++|++|+|+||... ..+.|+.+|+.   ..++++ ++++.+....  +.   
T Consensus        33 ~~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~-~~k~cgg~i~~---~~l~~l-gl~~~~~~~~--i~---  102 (450)
T PLN00093         33 KKLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD-NAKPCGGAIPL---CMVGEF-DLPLDIIDRK--VT---  102 (450)
T ss_pred             CCcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC-CCCCccccccH---hHHhhh-cCcHHHHHHH--hh---
Confidence            33456789999999999999999999999999999999854 45678888875   455667 7776654321  10   


Q ss_pred             ceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccE
Q 012845          117 KFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHE  196 (455)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~  196 (455)
                      ...+. ...+..+.. +.  .  .   ........++|..|++.|++++.+.|+                   +++.+ +
T Consensus       103 ~~~~~-~p~~~~v~~-~~--~--~---~~~~~~~~v~R~~~d~~L~~~A~~~Ga-------------------~~~~~-~  153 (450)
T PLN00093        103 KMKMI-SPSNVAVDI-GK--T--L---KPHEYIGMVRREVLDSFLRERAQSNGA-------------------TLING-L  153 (450)
T ss_pred             hheEe-cCCceEEEe-cc--c--C---CCCCeEEEecHHHHHHHHHHHHHHCCC-------------------EEEec-e
Confidence            01111 111111100 00  0  0   001123458999999999999999887                   77665 5


Q ss_pred             EEEeeec---CCceEEEEEecc--CCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccc
Q 012845          197 CVSVSAT---DQCINVIASFLK--EGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLL  271 (455)
Q Consensus       197 v~~i~~~---~~~~~v~~~~~~--~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (455)
                      +++++..   ++.+.+++....  .+.+...++++|+||+|||.+|.+|+.++....   .....+........  ... 
T Consensus       154 v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S~vrr~lg~~~~---~~~~~~~~~~~~~~--~~~-  227 (450)
T PLN00093        154 FTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANSRVAKDIDAGDY---DYAIAFQERIKIPD--DKM-  227 (450)
T ss_pred             EEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcchHHHHHhCCCCc---ceeEEEEEEEeCCh--hhc-
Confidence            7777642   234556554210  001112378999999999999999999976421   11111111111110  000 


Q ss_pred             cCCCceEEEEE----ccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEec
Q 012845          272 NERPGMLFFIF----NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMH  347 (455)
Q Consensus       272 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  347 (455)
                      ...+....+.+    .|+++.|+++..  + ...+.+.....     ..+...+.+.+...........+.......+++
T Consensus       228 ~~~~~~~~~~~g~~~~p~~Y~WifP~g--~-~~~VG~g~~~~-----~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~ip  299 (450)
T PLN00093        228 EYYEDLAEMYVGDDVSPDFYGWVFPKC--D-HVAVGTGTVVN-----KPAIKKYQRATRNRAKDKIAGGKIIRVEAHPIP  299 (450)
T ss_pred             cccCCeEEEEeCCCCCCCceEEEEECC--C-cEEEEEEEccC-----CCChHHHHHHHHHHhhhhcCCCeEEEEEEEEcc
Confidence            01122222222    244455555433  2 22233321111     112222333333222211111223333333443


Q ss_pred             eeeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCC---CCchhhhhHHHhhhHHHHHhHHhH
Q 012845          348 AEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI---APASILNTYETERKPIAEFNTALS  424 (455)
Q Consensus       348 ~~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~---~~~~al~~Y~~~r~~~~~~~~~~s  424 (455)
                      ....+.+.  .++++|||||||.++|++|+|+++||.+|..+++++.+.+...   .....|+.|++.++.........+
T Consensus       300 ~~~~~~~~--~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g~~~~s~~~L~~Y~~~~~~~~g~~~~~~  377 (450)
T PLN00093        300 EHPRPRRV--RGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGTRMVDEADLREYLRKWDKKYWPTYKVL  377 (450)
T ss_pred             ccccccee--CCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444  3899999999999999999999999999999999999887432   245789999999888777766666


Q ss_pred             HHHHHHHh
Q 012845          425 VQNFRAAM  432 (455)
Q Consensus       425 ~~~~~~~~  432 (455)
                      ....+.+.
T Consensus       378 ~~l~~~~~  385 (450)
T PLN00093        378 DILQKVFY  385 (450)
T ss_pred             HHHHHHHc
Confidence            55544443

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.98  E-value=1.2e-29  Score=253.32  Aligned_cols=323  Identities=15%  Similarity=0.184  Sum_probs=196.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEeec
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~~  123 (455)
                      |||+||||||||+++|+.|++.|++|+|+||.. +..+.|+..+++.   .++.+ ++++++....     +....+. .
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~-~~~~~cg~~i~~~---~l~~l-~i~~~~~~~~-----~~~~~~~-~   69 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERAL-SNIKPCGGAIPPC---LIEEF-DIPDSLIDRR-----VTQMRMI-S   69 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCC-CCcCcCcCCcCHh---hhhhc-CCchHHHhhh-----cceeEEE-c
Confidence            699999999999999999999999999999982 3446688888874   45666 7776654421     1222221 1


Q ss_pred             CCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeec
Q 012845          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (455)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~  203 (455)
                      ..+..+.. ..  +.      .......++|..|++.|.+.+.+.|+                   +++.+ +|+++..+
T Consensus        70 ~~~~~~~~-~~--~~------~~~~~~~~~r~~fd~~L~~~a~~~G~-------------------~v~~~-~v~~v~~~  120 (388)
T TIGR02023        70 PSRVPIKV-TI--PS------EDGYVGMVRREVFDSYLRERAQKAGA-------------------ELIHG-LFLKLERD  120 (388)
T ss_pred             CCCceeee-cc--CC------CCCceEeeeHHHHHHHHHHHHHhCCC-------------------EEEee-EEEEEEEc
Confidence            12211110 00  00      01112358999999999999999887                   77655 69999887


Q ss_pred             CCceEEEEEeccC-CcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEEEE
Q 012845          204 DQCINVIASFLKE-GKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF  282 (455)
Q Consensus       204 ~~~~~v~~~~~~~-g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (455)
                      ++.+.+++...+. ..+...++++|+||+|||.+|.+|+.++.+....  ....+...+.....  .. ...+....+++
T Consensus       121 ~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~lg~~~~~~--~~~a~~~~~~~~~~--~~-~~~~~~~~~~~  195 (388)
T TIGR02023       121 RDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKELGLPKNLP--RVIAYQERIKLPDD--KM-AYYEELADVYY  195 (388)
T ss_pred             CCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHcCCCCCCc--EEEEEEEEecCCch--hc-ccCCCeEEEEE
Confidence            7777776651100 0112247899999999999999999997653211  11111111111100  00 01122222222


Q ss_pred             ----ccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEeceeeecccccCC
Q 012845          283 ----NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY  358 (455)
Q Consensus       283 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (455)
                          .++++.|+.  |..+ ...+.+...     ....+.+.+.+.+.+.++....  +.......+++....+.+.  .
T Consensus       196 ~~~~~p~~y~wv~--P~~~-~~~vg~~~~-----~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~ip~~~~~~~~--~  263 (388)
T TIGR02023       196 GGEVSPDFYGWVF--PKGD-HIAVGTGTG-----THGFDAKQLQANLRRRAGLDGG--QTIRREAAPIPMKPRPRWD--F  263 (388)
T ss_pred             CCCcCCCceEEEe--eCCC-eeEEeEEEC-----CCCCCHHHHHHHHHHhhCCCCc--eEeeeeeEecccccccccc--C
Confidence                334444443  3332 222222111     1122344455555554432111  1222112222223334444  3


Q ss_pred             CcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhH
Q 012845          359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALS  424 (455)
Q Consensus       359 ~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s  424 (455)
                      +++++||||||.++|++|+|+++||.+|..++++|.++++.. ..+.|+.|++.++.........+
T Consensus       264 ~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~-~~~~L~~Y~~~~~~~~~~~~~~~  328 (388)
T TIGR02023       264 GRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNG-DATDLRHYERKFMKLYGTTFRVL  328 (388)
T ss_pred             CCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999999987543 46789999999998887777554

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>TIGR02028 ChlP geranylgeranyl reductase

Probab=99.97  E-value=8.9e-29  Score=247.18  Aligned_cols=333  Identities=14%  Similarity=0.116  Sum_probs=192.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEeec
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~~  123 (455)
                      +||+||||||||+++|+.|++.|++|+|+||.... .+.|+..++.   ..++++ |+++.+....  .   ...... .
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~-~~~cg~~i~~---~~l~~~-g~~~~~~~~~--i---~~~~~~-~   69 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDN-AKPCGGAIPL---CMVDEF-ALPRDIIDRR--V---TKMKMI-S   69 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCC-CCCccccccH---hhHhhc-cCchhHHHhh--h---ceeEEe-c
Confidence            58999999999999999999999999999998643 4668888875   456677 7765544311  1   111111 1


Q ss_pred             CCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee-
Q 012845          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA-  202 (455)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~-  202 (455)
                      ..+..+. +..  ..     ........++|..|++.|.+.+.+.|+                   +++.++ ++++.. 
T Consensus        70 p~~~~~~-~~~--~~-----~~~~~~~~v~R~~~d~~L~~~a~~~G~-------------------~v~~~~-~~~i~~~  121 (398)
T TIGR02028        70 PSNIAVD-IGR--TL-----KEHEYIGMLRREVLDSFLRRRAADAGA-------------------TLINGL-VTKLSLP  121 (398)
T ss_pred             CCceEEE-ecc--CC-----CCCCceeeeeHHHHHHHHHHHHHHCCc-------------------EEEcce-EEEEEec
Confidence            1111110 000  00     001112468999999999999999887                   787774 777643 


Q ss_pred             --cCCceEEEEEeccCC--cceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceE
Q 012845          203 --TDQCINVIASFLKEG--KCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML  278 (455)
Q Consensus       203 --~~~~~~v~~~~~~~g--~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (455)
                        .++.+.+++...+.+  .+...++++|+||+|||.+|.+|+.++....  ... ..+..........  . ...+...
T Consensus       122 ~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~v~~~~g~~~~--~~~-~~~~~~~~~~~~~--~-~~~~~~~  195 (398)
T TIGR02028       122 ADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSRVAKEIDAGDY--SYA-IAFQERIRLPDEK--M-AYYDDLA  195 (398)
T ss_pred             cCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcchHHHHHhCCCCc--ceE-EEEEEEeeCChhh--c-ccCCCeE
Confidence              233444544311100  1222478999999999999999999975421  111 1111111111000  0 0112222


Q ss_pred             EEEE----ccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEeceeeeccc
Q 012845          279 FFIF----NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKF  354 (455)
Q Consensus       279 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (455)
                      .+.+    .|+++.|..+.  .+ ...+.+.....     ....+.+.+.+...........+.......+++....+.+
T Consensus       196 ~~~~g~~~~p~gY~WifP~--~~-~~~VG~g~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ip~~~~~~~  267 (398)
T TIGR02028       196 EMYVGDDVSPDFYGWVFPK--CD-HVAVGTGTVAA-----KPEIKRLQSGIRARAAGKVAGGRIIRVEAHPIPEHPRPRR  267 (398)
T ss_pred             EEEeCCCCCCCceEEEEEC--CC-eEEEEEEeCCC-----CccHHHHHHhhhhhhhhccCCCcEEEEEEEeccccccccE
Confidence            2222    24445555443  32 23333321111     1112233333333211111111222222333333333444


Q ss_pred             ccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCC---CCchhhhhHHHhhhHHHHHhHHhHHHHHHHH
Q 012845          355 LCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI---APASILNTYETERKPIAEFNTALSVQNFRAA  431 (455)
Q Consensus       355 ~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~---~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~  431 (455)
                      ..  ++++|||||||.++|++|+||++||.+|..+++++.++++..   ....+|+.|++.++.........+....+.+
T Consensus       268 ~~--~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~  345 (398)
T TIGR02028       268 VV--GRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGAVTEEGDLAGYLRRWDKEYRPTYRVLDLLQRVF  345 (398)
T ss_pred             EC--CCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43  899999999999999999999999999999999999887543   2457899999988887766666555444433

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=99.97  E-value=4.6e-30  Score=275.06  Aligned_cols=331  Identities=19%  Similarity=0.219  Sum_probs=203.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhc--hHHHHHhcCCCcccccceE
Q 012845           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDG--LAEEIERSQPPVDLWRKFI  119 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~g--l~~~l~~~~~~~~~~~~~~  119 (455)
                      .+|+|||||||||++|+.|++.  |++|+||||++.....+.++.+++++++.|..+ +  +.+.+....   ..|....
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~-~~~~~~~~~~~~---~~~~~~~   76 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAA-DPVSAAAIGDAF---NHWDDID   76 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhc-CHHHHHHHHHhc---ccCCceE
Confidence            3799999999999999999998  899999999988777788999999999988877 4  333333322   1222222


Q ss_pred             EeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEE
Q 012845          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (455)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~  199 (455)
                      +..  .+.....             .......+.|..|.+.|++.+.+.|+                   +++++++|++
T Consensus        77 ~~~--~g~~~~~-------------~g~~~~~i~R~~L~~~L~e~a~~~GV-------------------~i~~g~~v~~  122 (765)
T PRK08255         77 VHF--KGRRIRS-------------GGHGFAGIGRKRLLNILQARCEELGV-------------------KLVFETEVPD  122 (765)
T ss_pred             EEE--CCEEEEE-------------CCeeEecCCHHHHHHHHHHHHHHcCC-------------------EEEeCCccCc
Confidence            221  1221110             01123458899999999999999887                   8999998876


Q ss_pred             eeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCccc--ceeEEEEEecCCcccccccCCCce
Q 012845          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDL--QKLVSVHFLSKDLGDYLLNERPGM  277 (455)
Q Consensus       200 i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  277 (455)
                      ++..                   ..++|+||+|||.+|.+|+++...+......  ..+...  ......      ....
T Consensus       123 i~~~-------------------~~~~D~VVgADG~~S~vR~~~~~~~~~~~~~~~~~~~w~--g~~~~~------~~~~  175 (765)
T PRK08255        123 DQAL-------------------AADADLVIASDGLNSRIRTRYADTFQPDIDTRRCRFVWL--GTHKVF------DAFT  175 (765)
T ss_pred             hhhh-------------------hcCCCEEEEcCCCCHHHHHHHHhhcCCceecCCCceEEe--cCCCcc------ccee
Confidence            5310                   1368999999999999999874222211111  111111  000000      0000


Q ss_pred             EEEEEccCceEEEEeecCCCCeEEEEeecCCCC---CCCCCCCHHHHHHHHHHhhCCCCCCeeEEE------eeceEece
Q 012845          278 LFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ---QNLEDFSPEICEKLIFKLVGWELSDIDVID------IKPWVMHA  348 (455)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~~  348 (455)
                      ........+..+...++...+...+.+......   .....++.+...+.+.+.+........++.      ...|....
T Consensus       176 ~~~~~~~~g~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~li~~~~~~~~~~w~~~~  255 (765)
T PRK08255        176 FAFEETEHGWFQAHAYRFDDDTSTFIVETPEEVWRAAGLDEMSQEESIAFCEKLFADYLDGHPLMSNASHLRGSAWINFP  255 (765)
T ss_pred             EEEEecCCceEEEEEeeeCCCCcEEEEEcCHHHHHhcCCccCCHHHHHHHHHHHhHHhcCCCcccccccccccceeeecc
Confidence            000111111111112333333222222221110   112334454444444443322211111111      11243322


Q ss_pred             -eeecccccCCCc----EEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHh
Q 012845          349 -EVAEKFLCCYNQ----IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTAL  423 (455)
Q Consensus       349 -~~~~~~~~~~~~----vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~  423 (455)
                       ...+.|.  .+|    ++|+|||||.|+|+.|||+|+||+||..|+++|.+.  ..+...+|+.|++.|+++++.+++.
T Consensus       256 ~~~~~~w~--~gr~~~~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~--~~~~~~al~~ye~~R~~r~~~~~~~  331 (765)
T PRK08255        256 RVVCERWV--HWNRRVPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHEH--PGDLPAALAAYEEERRVEVLRIQNA  331 (765)
T ss_pred             eeccCCCc--cCCCcccEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHHc--cccHHHHHHHHHHHHHHHHHHHHHH
Confidence             2344555  377    999999999999999999999999999999999864  2256789999999999999999999


Q ss_pred             HHHHHHHHhccccccCCCcc
Q 012845          424 SVQNFRAAMEVPSALGLDPT  443 (455)
Q Consensus       424 s~~~~~~~~~~~~~~~~~~~  443 (455)
                      |+....++....+..+.+|.
T Consensus       332 s~~~~~~~~~~~~~~~~~~~  351 (765)
T PRK08255        332 ARNSTEWFENVERYAGLEPE  351 (765)
T ss_pred             HHHhCceeeecchhhCCCHH
Confidence            99887777766666665543

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.97  E-value=3.7e-29  Score=240.58  Aligned_cols=291  Identities=18%  Similarity=0.204  Sum_probs=180.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEeec
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~~  123 (455)
                      +||+||||||+|+++|+.|++.|++|+|+||.+.+....++..+.+++++.+... +.. .+.       .+....+ ..
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~~~-------~~~~~~~-~~   70 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLP-LEL-IVN-------LVRGARF-FS   70 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCC-chh-hhh-------heeeEEE-Ec
Confidence            6999999999999999999999999999999988777778888998888777554 321 110       0111111 11


Q ss_pred             CCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeec
Q 012845          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (455)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~  203 (455)
                      ..+.... ..          ........++|..+.+.|.+.+.+.|+                   +++++++|+++..+
T Consensus        71 ~~~~~~~-~~----------~~~~~~~~i~r~~l~~~l~~~~~~~gv-------------------~~~~~~~v~~~~~~  120 (295)
T TIGR02032        71 PNGDSVE-IP----------IETELAYVIDRDAFDEQLAERAQEAGA-------------------ELRLGTTVLDVEIH  120 (295)
T ss_pred             CCCcEEE-ec----------cCCCcEEEEEHHHHHHHHHHHHHHcCC-------------------EEEeCcEEeeEEEe
Confidence            2222111 00          002234668999999999999999886                   99999999999888


Q ss_pred             CCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEEEEc
Q 012845          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFN  283 (455)
Q Consensus       204 ~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (455)
                      ++.+.+.+.   ++.   .++++|+||+|||.+|.++++++......... ..+...+.....     ...+........
T Consensus       121 ~~~~~~~~~---~~~---~~~~a~~vv~a~G~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~  188 (295)
T TIGR02032       121 DDRVVVIVR---GGE---GTVTAKIVIGADGSRSIVAKKLGLRKEPRELG-VAARAEVEMPDE-----EVDEDFVEVYID  188 (295)
T ss_pred             CCEEEEEEc---Ccc---EEEEeCEEEECCCcchHHHHhcCCCCCCccee-eEEEEEEecCCc-----ccCcceEEEEcC
Confidence            777666554   322   27899999999999999999887544221111 111112211110     111222222222


Q ss_pred             c--CceEEEEeecCCCCeEEEEeecCCCCCCCCCCC-HHHHHHHHHHhhCCCCCCeeEEEeeceEecee-eecccccCCC
Q 012845          284 T--EAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFS-PEICEKLIFKLVGWELSDIDVIDIKPWVMHAE-VAEKFLCCYN  359 (455)
Q Consensus       284 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  359 (455)
                      .  ....+.+.+|...+.+.+.+....+.   ...+ .+.+.+++.....  ....+......+++... ....+.  .+
T Consensus       189 ~~~~~~~~~~~~P~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~--~~  261 (295)
T TIGR02032       189 RGISPGGYGWVFPKGDGTANVGVGSRSAE---EGEDLKKYLKDFLARRPE--LKDAETVEVIGAPIPIGRPDDKTV--RG  261 (295)
T ss_pred             CCcCCCceEEEEeCCCCeEEEeeeeccCC---CCCCHHHHHHHHHHhCcc--cccCcEEeeeceeeccCCCCCccc--cC
Confidence            1  11123444555556555544333222   1122 2334444433321  12222333333333332 233443  49


Q ss_pred             cEEEEcCccccCCCCcCccchhhHHHHHHHHHHH
Q 012845          360 QIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKI  393 (455)
Q Consensus       360 ~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L  393 (455)
                      ||+++|||||+++|++|||+|+||+||..++++|
T Consensus       262 ~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~  295 (295)
T TIGR02032       262 NVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI  295 (295)
T ss_pred             CEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999875

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK11445 putative oxidoreductase; Provisional

Probab=99.97  E-value=8.9e-29  Score=243.57  Aligned_cols=312  Identities=20%  Similarity=0.265  Sum_probs=179.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC----CCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceE
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS----THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~----~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~  119 (455)
                      +||+||||||||+++|+.|++. ++|+|+||.+.+.    .+.+|..|++++++.|+++ |++........+.    .+.
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~l-gl~~~~~~~~~~~----~~~   75 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKD-GLTLPKDVIANPQ----IFA   75 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHc-CCCCCcceeeccc----cce
Confidence            7999999999999999999999 9999999998543    3458899999999999999 8752111100000    000


Q ss_pred             EeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEE
Q 012845          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (455)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~  199 (455)
                               ....+...  ...... ......++|..|++.|.+.+ +.|+                   ++++++.|++
T Consensus        76 ---------~~~~~~~~--~~~~~~-~~~~~~i~R~~~~~~L~~~~-~~gv-------------------~v~~~~~v~~  123 (351)
T PRK11445         76 ---------VKTIDLAN--SLTRNY-QRSYINIDRHKFDLWLKSLI-PASV-------------------EVYHNSLCRK  123 (351)
T ss_pred             ---------eeEecccc--cchhhc-CCCcccccHHHHHHHHHHHH-hcCC-------------------EEEcCCEEEE
Confidence                     00000000  000000 11235689999999998854 5555                   8999999999


Q ss_pred             eeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEE
Q 012845          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF  279 (455)
Q Consensus       200 i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (455)
                      ++.+++++.+++.  ++|+  ..++++|+||+|||.+|.+|++++..... ..+..+ ...+.....       .+.. .
T Consensus       124 i~~~~~~~~v~~~--~~g~--~~~i~a~~vV~AdG~~S~vr~~l~~~~~~-~~~~~~-~~~~~~~~~-------~~~~-~  189 (351)
T PRK11445        124 IWREDDGYHVIFR--ADGW--EQHITARYLVGADGANSMVRRHLYPDHQI-RKYVAI-QQWFAEKHP-------VPFY-S  189 (351)
T ss_pred             EEEcCCEEEEEEe--cCCc--EEEEEeCEEEECCCCCcHHhHHhcCCCch-hhEEEE-EEEecCCCC-------CCCc-c
Confidence            9988888777653  2443  23689999999999999999998643221 111111 111111110       0100 0


Q ss_pred             EEEccC-ceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHH---HHHHHHhhCCCCCCeeEEEeeceEeceeeecccc
Q 012845          280 FIFNTE-AIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEIC---EKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFL  355 (455)
Q Consensus       280 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (455)
                      .++.+. ..++.+..|... .+.....+  +   ..+ ..+.+   .+.+.+ ++...+.. +.....+++.......+.
T Consensus       190 ~~f~~~~~~~~~W~~p~~~-~~~~g~~~--~---~~~-~~~~~~~l~~~l~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~  260 (351)
T PRK11445        190 CIFDNEITDCYSWSISKDG-YFIFGGAY--P---MKD-GRERFETLKEKLSA-FGFQFGKP-VKTEACTVLRPSRWQDFV  260 (351)
T ss_pred             eEEeccCCCceEEEeCCCC-cEEecccc--c---ccc-hHHHHHHHHHHHHh-cccccccc-cccccccccCcccccccc
Confidence            111111 111222223222 11111000  0   011 11112   222222 22211111 111111111111112222


Q ss_pred             cCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhH
Q 012845          356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNT  421 (455)
Q Consensus       356 ~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~  421 (455)
                      ...+|++|||||||.++|++|+|+++|+.|+..|++.|.+..     ...++.|++.++....++.
T Consensus       261 ~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~~-----~~~~~~y~~~~~~~~~~~~  321 (351)
T PRK11445        261 CGKDNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQP-----EKLNTAYWRKTRKLRLKLF  321 (351)
T ss_pred             cCCCCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhcc-----cchHHHHHHHHHHHHHHHH
Confidence            224899999999999999999999999999999999997642     5568999998877664443

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.97  E-value=2.9e-28  Score=243.62  Aligned_cols=331  Identities=19%  Similarity=0.196  Sum_probs=204.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcc-cccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQA-HFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~-~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      +.+||+||||||||++||+.|++.|++|+||||...+..+.++ ..+.+..++.+... .. .++...   +  .....+
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~-~~-~~i~~~---v--~~~~~~   74 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPD-FD-EEIERK---V--TGARIY   74 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCC-cc-hhhhee---e--eeeEEE
Confidence            5799999999999999999999999999999999999877766 77777666554322 11 112111   1  011111


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                       ..  +......           ......+.++|..++++|.+.+++.|+                   .++.++++..+
T Consensus        75 -~~--~~~~~~~-----------~~~~~~y~v~R~~fd~~La~~A~~aGa-------------------e~~~~~~~~~~  121 (396)
T COG0644          75 -FP--GEKVAIE-----------VPVGEGYIVDRAKFDKWLAERAEEAGA-------------------ELYPGTRVTGV  121 (396)
T ss_pred             -ec--CCceEEe-----------cCCCceEEEEhHHhhHHHHHHHHHcCC-------------------EEEeceEEEEE
Confidence             01  1111000           001235778999999999999999998                   99999999999


Q ss_pred             eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEE
Q 012845          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF  280 (455)
Q Consensus       201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (455)
                      ..+++++.+.+.   .+.   .++.+|+||+|||.+|.++++++.. ..................    .........+.
T Consensus       122 ~~~~~~~~~~~~---~~~---~e~~a~~vI~AdG~~s~l~~~lg~~-~~~~~~~~~~~~e~~~~~----~~~~~~~~~~~  190 (396)
T COG0644         122 IREDDGVVVGVR---AGD---DEVRAKVVIDADGVNSALARKLGLK-DRKPEDYAIGVKEVIEVP----DDGDVEEFLYG  190 (396)
T ss_pred             EEeCCcEEEEEE---cCC---EEEEcCEEEECCCcchHHHHHhCCC-CCChhheeEEeEEEEecC----CCCceEEEEec
Confidence            998888776665   332   3889999999999999999999876 111111111111111111    00111111112


Q ss_pred             EEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCC-----eeEEEee--ceEeceeeecc
Q 012845          281 IFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSD-----IDVIDIK--PWVMHAEVAEK  353 (455)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~  353 (455)
                      .+.....+..+.+|...+...+.+............    . +.++++.......     .+.....  ..|.......+
T Consensus       191 ~~~~~~~Gy~wifP~~~~~~~VG~g~~~~~~~~~~~----~-~~l~~f~~~~~~~~~~~~~~~~~~~~~~ip~~g~~~~~  265 (396)
T COG0644         191 PLDVGPGGYGWIFPLGDGHANVGIGVLLDDPSLSPF----L-ELLERFKEHPAIRKLLLGGKILEYAAGGIPEGGPASRP  265 (396)
T ss_pred             CCccCCCceEEEEECCCceEEEEEEEecCCcCCCch----H-HHHHHHHhCcccchhccCCceEEEeeeecccCCcCCCc
Confidence            112222334444555555555554432222111111    1 3334333221111     1222222  22222222222


Q ss_pred             cccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHh
Q 012845          354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAM  432 (455)
Q Consensus       354 ~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~  432 (455)
                      ..  .+++++|||||++++|++|+|+..||.+|..+++.|.++....  .+.|..|++.+++....-..........+.
T Consensus       266 ~~--~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~--~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~  340 (396)
T COG0644         266 LV--GDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEGG--EEALAEYERLLRKSLAREDLKSLRLLKLLL  340 (396)
T ss_pred             cc--cCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHcC--hhHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence            33  3899999999999999999999999999999999999986544  678888999988777666665555444333

>PRK10015 oxidoreductase; Provisional

Probab=99.96  E-value=8.2e-27  Score=234.81  Aligned_cols=331  Identities=14%  Similarity=0.171  Sum_probs=181.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC-cccccChhHHHHHHhhhchHHHHHhcCCCccc--c-c
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP-QAHFINNRYALVFRKLDGLAEEIERSQPPVDL--W-R  116 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~-~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~--~-~  116 (455)
                      +.++||+||||||||+++|+.|+++|++|+|+||.+.+..+. ++..+....++.+  +|++...     .+...  . .
T Consensus         3 ~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l--~~~~~~~-----~~i~~~~~~~   75 (429)
T PRK10015          3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAI--IPGFAAS-----APVERKVTRE   75 (429)
T ss_pred             ccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHH--ccccccc-----CCccccccce
Confidence            356999999999999999999999999999999998876543 4555544333322  1233210     11100  0 1


Q ss_pred             ceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccE
Q 012845          117 KFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHE  196 (455)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~  196 (455)
                      .+.+. ...+.....+... ...    ..+...+.+.|..|+++|.+.+.+.|+                   +++.+++
T Consensus        76 ~~~~~-~~~~~~~~~~~~~-~~~----~~~~~~~~v~R~~fd~~L~~~a~~~Gv-------------------~i~~~~~  130 (429)
T PRK10015         76 KISFL-TEESAVTLDFHRE-QPD----VPQHASYTVLRNRLDPWLMEQAEQAGA-------------------QFIPGVR  130 (429)
T ss_pred             eEEEE-eCCCceEeecccC-CCC----CCCcCceEeehhHHHHHHHHHHHHcCC-------------------EEECCcE
Confidence            11111 1111111111000 000    011235678899999999999999887                   9999999


Q ss_pred             EEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCccc----cccc
Q 012845          197 CVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGD----YLLN  272 (455)
Q Consensus       197 v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  272 (455)
                      |+++..+++.+.....   ++.    ++.+|+||+|||.+|.+++.++........ .....+.........    ....
T Consensus       131 V~~i~~~~~~v~~v~~---~~~----~i~A~~VI~AdG~~s~v~~~lg~~~~~~~~-~~~~gvk~~~~~~~~~i~~~~~~  202 (429)
T PRK10015        131 VDALVREGNKVTGVQA---GDD----ILEANVVILADGVNSMLGRSLGMVPASDPH-HYAVGVKEVIGLTPEQINDRFNI  202 (429)
T ss_pred             EEEEEEeCCEEEEEEe---CCe----EEECCEEEEccCcchhhhcccCCCcCCCcC-eEEEEEEEEEeCCHHHhhHhhcC
Confidence            9999876666543333   332    789999999999999999998753322111 111111111111100    0100


Q ss_pred             -CCCceEEEEEc-c-Cc---eEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhh--CCCCCCeeEEEeece
Q 012845          273 -ERPGMLFFIFN-T-EA---IGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLV--GWELSDIDVIDIKPW  344 (455)
Q Consensus       273 -~~~~~~~~~~~-~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~  344 (455)
                       ...+.++.+++ + .+   .+|++..   .+...+.+............+...+.+.+.+..  .......+.......
T Consensus       203 ~~~~g~~w~~~g~~~~g~~g~G~~~~~---~d~v~vGv~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~e~~~~  279 (429)
T PRK10015        203 TGEEGAAWLFAGSPSDGLMGGGFLYTN---KDSISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAH  279 (429)
T ss_pred             CCCCCeEEEecCccCCCCCCceEEEEc---CCcEEEEEEEehhhhccCCCCHHHHHHHHhhChHHHHHhcCCEEEEEeeE
Confidence             11222222221 1 11   2233221   233333321110000001112222222222211  000111122222222


Q ss_pred             Eecee---eecccccCCCcEEEEcCccccCCC--CcCccchhhHHHHHHHHHHHHHhHcC-CCCchhhhhHHHhhhHH
Q 012845          345 VMHAE---VAEKFLCCYNQIILAGDACHRFPP--AGGFGMNTGVQDAHNLAWKIASVLKD-IAPASILNTYETERKPI  416 (455)
Q Consensus       345 ~~~~~---~~~~~~~~~~~vvliGDAAh~~~P--~~G~G~~~Al~da~~La~~L~~~~~~-~~~~~al~~Y~~~r~~~  416 (455)
                      .++..   ..+...  .+++++|||||++++|  ++|+||++||.++..+|+++.+++.. +.+...|+.|++..+..
T Consensus       280 ~ip~gg~~~~~~~~--~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d~s~~~l~~Y~~~~~~~  355 (429)
T PRK10015        280 MVPEGGLAMVPQLV--NDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQS  355 (429)
T ss_pred             EcccCCcccCCccc--cCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHC
Confidence            22211   122333  4899999999999995  69999999999999999999988763 44678899999988866

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.95  E-value=3.3e-26  Score=230.67  Aligned_cols=339  Identities=16%  Similarity=0.183  Sum_probs=184.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC-cccccChhHHHHHHhhhchHHHHHhcCCCcc---ccc
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP-QAHFINNRYALVFRKLDGLAEEIERSQPPVD---LWR  116 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~-~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~---~~~  116 (455)
                      ..++||+||||||||+++|+.|+++|++|+|+||.+.+..+. ++..+....++.+  +|.+.    .. .+..   ...
T Consensus         3 ~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l--~~~~~----~~-~~~~~~~~~~   75 (428)
T PRK10157          3 EDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHI--IPGFA----DS-APVERLITHE   75 (428)
T ss_pred             cccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHH--hhhhh----hc-Ccccceeeee
Confidence            356999999999999999999999999999999998876544 3444544333221  11221    11 1111   011


Q ss_pred             ceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccE
Q 012845          117 KFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHE  196 (455)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~  196 (455)
                      ...+. ...+....  +.......   ......+.+.|..|+++|.+.+++.|+                   +++.+++
T Consensus        76 ~~~~~-~~~~~~~~--~~~~~~~~---~~~~~~~~v~R~~fD~~L~~~a~~~Gv-------------------~i~~~~~  130 (428)
T PRK10157         76 KLAFM-TEKSAMTM--DYCNGDET---SPSQRSYSVLRSKFDAWLMEQAEEAGA-------------------QLITGIR  130 (428)
T ss_pred             eEEEE-cCCCceee--cccccccc---CCCCCceeeEHHHHHHHHHHHHHHCCC-------------------EEECCCE
Confidence            11111 11121111  11000000   112234567899999999999999887                   9999999


Q ss_pred             EEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCccc-----ccc
Q 012845          197 CVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGD-----YLL  271 (455)
Q Consensus       197 v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  271 (455)
                      |+++..+++.+.+...   ++.    ++.+|+||+|||.+|.++++++...... .....+.+.........     ...
T Consensus       131 V~~i~~~~g~v~~v~~---~g~----~i~A~~VI~A~G~~s~l~~~lgl~~~~~-~~~~av~~~~~~~~~~~~~~~~~~~  202 (428)
T PRK10157        131 VDNLVQRDGKVVGVEA---DGD----VIEAKTVILADGVNSILAEKLGMAKRVK-PTDVAVGVKELIELPKSVIEDRFQL  202 (428)
T ss_pred             EEEEEEeCCEEEEEEc---CCc----EEECCEEEEEeCCCHHHHHHcCCCCCCC-CcEEEEEEEEEEEcCHHHHHHhhcc
Confidence            9999877666543333   443    7899999999999999999987653221 12222222111111100     000


Q ss_pred             cCCCceE-EEEEccCc----eEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCC--CCCeeEEEeece
Q 012845          272 NERPGML-FFIFNTEA----IGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWE--LSDIDVIDIKPW  344 (455)
Q Consensus       272 ~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~  344 (455)
                      ...++.. ++...+..    .+|++.   ......+.+............+...+.+.+.+.....  ............
T Consensus       203 ~~~~g~~~~~~g~~~~g~~ggG~~~~---~~~~~svG~~~~~~~~~~~~~~~~~~l~~~~~~p~v~~~~~~~~~~~~~~~  279 (428)
T PRK10157        203 QGNQGAACLFAGSPTDGLMGGGFLYT---NENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAH  279 (428)
T ss_pred             CCCCCeEEEEEECCCCCCcCceeEEE---cCCeEEEEEEEehHHhcccCCCHHHHHHHHHhCchHHHHhCCCeEHHHHhh
Confidence            1112222 22211111    223332   1233333322111110011122222223232211000  000011111111


Q ss_pred             Eece---eeecccccCCCcEEEEcCccccCCC--CcCccchhhHHHHHHHHHHHHHhHcCC-CCchhhhhHHHhhhHHHH
Q 012845          345 VMHA---EVAEKFLCCYNQIILAGDACHRFPP--AGGFGMNTGVQDAHNLAWKIASVLKDI-APASILNTYETERKPIAE  418 (455)
Q Consensus       345 ~~~~---~~~~~~~~~~~~vvliGDAAh~~~P--~~G~G~~~Al~da~~La~~L~~~~~~~-~~~~al~~Y~~~r~~~~~  418 (455)
                      .++.   ...+...  .++|++|||||++++|  ++|+|+++|+.++..+|+++.++++.. .+...|..|++..+..+-
T Consensus       280 ~ip~~g~~~~~~~~--~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~~~s~~~l~~Y~~~l~~~~~  357 (428)
T PRK10157        280 VVPEAGINMLPELV--GDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPL  357 (428)
T ss_pred             HhhcCCcccCCcee--cCCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHhHH
Confidence            1111   1112222  3899999999999998  599999999999999999999887543 356789999998877753


Q ss_pred             HhHHhH
Q 012845          419 FNTALS  424 (455)
Q Consensus       419 ~~~~~s  424 (455)
                      +-+...
T Consensus       358 ~~l~~~  363 (428)
T PRK10157        358 RDMRMY  363 (428)
T ss_pred             HHHHHH
Confidence            444444

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=99.95  E-value=4.9e-26  Score=213.98  Aligned_cols=348  Identities=19%  Similarity=0.210  Sum_probs=226.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCCCC---------CCcccccChhHHHHHHhhhchHHHHHh
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAFST---------HPQAHFINNRYALVFRKLDGLAEEIER  107 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~----g~~V~l~Er~~~~~~---------~~~~~~l~~~~~~~l~~~~gl~~~l~~  107 (455)
                      ...+||+||||||+|+++|..|...    .++|.|+|....+.-         ..+-..+++.....++.+ |.|+.+..
T Consensus        34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~-~awd~i~~  112 (481)
T KOG3855|consen   34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSI-GAWDHIFH  112 (481)
T ss_pred             cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhc-CHHHHhhh
Confidence            3489999999999999999999865    578999998844321         234567889999999999 99998855


Q ss_pred             -cCCCcccccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHH-HHHhcccccccCCCcccccccc
Q 012845          108 -SQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLK-QLEKLNFKICTSEGTEGLHNHL  185 (455)
Q Consensus       108 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~-~~~~~g~~~~~~~~~~~~~~~~  185 (455)
                       ...+.....    .++..-+....++.....      .+ ....+....++-.|+. .+...                 
T Consensus       113 ~R~~~~~~~~----v~Ds~s~a~I~~~~d~~~------~d-~a~iien~nIq~sL~~s~~~s~-----------------  164 (481)
T KOG3855|consen  113 DRYQKFSRML----VWDSCSAALILFDHDNVG------ID-MAFIIENDNIQCSLYNSQLDSE-----------------  164 (481)
T ss_pred             hcccccccee----eecccchhhhhhcccccc------cc-ceeeeehhHHHHHHHHHHHhhh-----------------
Confidence             333332211    111111111111110000      01 1344556667777774 22221                 


Q ss_pred             cccceEEeccEEEEeeec------CC--ceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeE
Q 012845          186 LQGREILMGHECVSVSAT------DQ--CINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLV  257 (455)
Q Consensus       186 ~~~~~i~~~~~v~~i~~~------~~--~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~  257 (455)
                      .++++|....++..+...      ++  ...++..   +|.    .+.+|++|+|||.||.+|+..+++..++.|.+..+
T Consensus       165 ~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~---dg~----~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~hav  237 (481)
T KOG3855|consen  165 SDNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLT---DGI----NFATDLLIGADGFNSVVRKASNIDVASWNYDQHAV  237 (481)
T ss_pred             cCceeeecccceeeeccccccCCCCCcceEEEEec---cCc----eeeeceeeccccccchhhhhcCCCcccccccceee
Confidence            234688888888887642      22  2335555   664    88999999999999999999999998888777765


Q ss_pred             EEEEecCCcccccccCCCceEEEEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhh--------
Q 012845          258 SVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLV--------  329 (455)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------  329 (455)
                      .....-..-     ...+...+..|.|.|...+++.+.....++|...- .....+..+++|.+.+++...+        
T Consensus       238 VAtl~l~~~-----~~~~~~AwQRFlP~GpiAllpl~d~~s~LvWSts~-~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~  311 (481)
T KOG3855|consen  238 VATLKLEEE-----AILNGVAWQRFLPTGPIALLPLSDTLSSLVWSTSP-ENASILKSLPEERFVDLLNSAFSSQNPRAA  311 (481)
T ss_pred             eEEEEeccc-----ccccchhHHhcCCCCceeecccccccccceeecCH-HHHHHHhcCCchhHHHHHHHHHhccCCCch
Confidence            554432221     23566677788898888888888777777776431 1011111222222222211111        


Q ss_pred             -----------------------CC-----CCCC-eeEE--EeeceEeceeeecccccCCCcEEEEcCccccCCCCcCcc
Q 012845          330 -----------------------GW-----ELSD-IDVI--DIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFG  378 (455)
Q Consensus       330 -----------------------~~-----~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~vvliGDAAh~~~P~~G~G  378 (455)
                                             +.     -+.. .++.  ....||+.....+.++.  +|+.|+|||||.++|+.|||
T Consensus       312 ~~~~~~~al~~~~~~~~sl~~~~k~~~~~q~pp~V~~v~dksRa~FPLgf~ha~~yV~--~~~Al~GDAAHr~hPlAgqG  389 (481)
T KOG3855|consen  312 YSDDADFALNGRAQLSESLLNTSKRLANQQYPPSVFEVGDKSRAQFPLGFGHADEYVT--DRVALIGDAAHRVHPLAGQG  389 (481)
T ss_pred             hhhchhhhhcchhhccHHHHhccCcccccccCCeEEEecccceeecccccccHHHhcC--CchhhhcchhhccccCcccc
Confidence                                   00     0000 0111  12246777778888875  99999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHhHc---CCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHh
Q 012845          379 MNTGVQDAHNLAWKIASVLK---DIAPASILNTYETERKPIAEFNTALSVQNFRAAM  432 (455)
Q Consensus       379 ~~~Al~da~~La~~L~~~~~---~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~  432 (455)
                      .|+++.|+..|.+.|.+++.   +-++..-|+.|++.|.+....+.-......+..+
T Consensus       390 vNlg~~dV~~L~~sL~~ai~~g~DlgS~~~L~~y~~~~~~~N~~ll~~vdkl~klY~  446 (481)
T KOG3855|consen  390 VNLGFSDVKILVDSLSEAIVSGLDLGSVEHLEPYERERLQHNYVLLGAVDKLHKLYA  446 (481)
T ss_pred             cCCChhhHHHHHHHHHHHHHhcccccchhhhhHHHHHHhhhcchHHHHHHHHHHHHh
Confidence            99999999999999999874   3356788999999998887776666655555444

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.94  E-value=3.9e-24  Score=213.93  Aligned_cols=307  Identities=17%  Similarity=0.228  Sum_probs=176.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEeecC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSV  124 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~~~  124 (455)
                      ||+||||||||+++|+.|++.|++|+|+|+.+... ....+.+....   ++++ ++.+.+.      ..|.........
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~-~~~~~~~~~~~---~~~~-~~~~~~~------~~~~~~~~~~~~   69 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIP-GNHTYGVWDDD---LSDL-GLADCVE------HVWPDVYEYRFP   69 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCC-CCccccccHhh---hhhh-chhhHHh------hcCCCceEEecC
Confidence            89999999999999999999999999999986542 22233333322   3333 4332221      122221111100


Q ss_pred             CCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeec-
Q 012845          125 TGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT-  203 (455)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~-  203 (455)
                      .....               .+..+..+++..|.+.|.+.+.+.|+                   +++ ..+|+.+..+ 
T Consensus        70 ~~~~~---------------~~~~~~~i~~~~l~~~l~~~~~~~gv-------------------~~~-~~~v~~i~~~~  114 (388)
T TIGR01790        70 KQPRK---------------LGTAYGSVDSTRLHEELLQKCPEGGV-------------------LWL-ERKAIHAEADG  114 (388)
T ss_pred             Ccchh---------------cCCceeEEcHHHHHHHHHHHHHhcCc-------------------EEE-ccEEEEEEecC
Confidence            00000               01224568999999999999988875                   664 6688888776 


Q ss_pred             CCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEEEEc
Q 012845          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFN  283 (455)
Q Consensus       204 ~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (455)
                      ++.+.+++.   +|.    ++++|+||+|||.+|.+++.......   .++......+.......   . .....++.+.
T Consensus       115 ~~~~~v~~~---~g~----~~~a~~VI~A~G~~s~~~~~~~~~~~---~~q~~~G~~~~~~~~~~---~-~~~~~~~d~~  180 (388)
T TIGR01790       115 VALSTVYCA---GGQ----RIQARLVIDARGFGPLVQYVRFPLNV---GFQVAYGVEARLSRPPH---G-PSSMVIMDAR  180 (388)
T ss_pred             CceeEEEeC---CCC----EEEeCEEEECCCCchhcccccCCCCc---eEEEEEEEEEEEcCCCC---C-CCceEEEecc
Confidence            455556554   554    78999999999999966543311111   12222222222211110   0 1111222221


Q ss_pred             cC--------ceE--EEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhh---CCCCCCeeEEEeeceEeceee
Q 012845          284 TE--------AIG--VLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLV---GWELSDIDVIDIKPWVMHAEV  350 (455)
Q Consensus       284 ~~--------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~  350 (455)
                      ..        +..  +.+.+|...+...+......   .....+.+.+.+.+.+++   ++....+.......+|+....
T Consensus       181 ~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~~~~~iP~~~~~  257 (388)
T TIGR01790       181 VDQLAAPELKGYRPTFLYAMPLGSTRVFIEETSLA---DRPALPRDRLRQRILARLNAQGWQIKTIEEEEWGALPVGLPG  257 (388)
T ss_pred             ccccccccccCCCCceEEEeecCCCeEEEEecccc---CCCCCCHHHHHHHHHHHHHHcCCeeeEEEeeeeEEEecccCC
Confidence            11        111  33344544444433211111   112344555666665544   333222222222233443221


Q ss_pred             ecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHH
Q 012845          351 AEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEF  419 (455)
Q Consensus       351 ~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~  419 (455)
                        +..  .+|+++||||||.++|++|+|++.|+.+|..+++.|.++++.. ...+++.|++..+++..+
T Consensus       258 --~~~--~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~-~~~~~~~~~~~~~~~~~~  321 (388)
T TIGR01790       258 --PFL--PQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQS-SELATAAWDGLWPTERRR  321 (388)
T ss_pred             --Ccc--CCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHhchHHHHH
Confidence              222  4899999999999999999999999999999999999887433 468888998776666655

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PLN02697 lycopene epsilon cyclase

Probab=99.94  E-value=1.1e-23  Score=214.69  Aligned_cols=316  Identities=17%  Similarity=0.259  Sum_probs=187.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      ...+||+||||||||+++|+.|++.|++|+|+|+....   .+.++++.   ..++.+ |+.+.+..      .|.....
T Consensus       106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~---~~n~GvW~---~~l~~l-gl~~~i~~------~w~~~~v  172 (529)
T PLN02697        106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF---TNNYGVWE---DEFKDL-GLEDCIEH------VWRDTIV  172 (529)
T ss_pred             cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccC---CCccccch---hHHHhc-CcHHHHHh------hcCCcEE
Confidence            44689999999999999999999999999999986332   22233432   345666 77655432      2222222


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                      ... .+....              ....+..++|..|.+.|++.+.+.|+                   ++ .+++|+++
T Consensus       173 ~~~-~~~~~~--------------~~~~Yg~V~R~~L~~~Ll~~a~~~GV-------------------~~-~~~~V~~I  217 (529)
T PLN02697        173 YLD-DDKPIM--------------IGRAYGRVSRTLLHEELLRRCVESGV-------------------SY-LSSKVDRI  217 (529)
T ss_pred             Eec-CCceee--------------ccCcccEEcHHHHHHHHHHHHHhcCC-------------------EE-EeeEEEEE
Confidence            221 111110              01123468999999999999988886                   66 77899999


Q ss_pred             eecCCceEEE-EEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCC-cccceeEEEEEecCCcccccccCCCceE
Q 012845          201 SATDQCINVI-ASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGE-KDLQKLVSVHFLSKDLGDYLLNERPGML  278 (455)
Q Consensus       201 ~~~~~~~~v~-~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (455)
                      ..+++.+.+. +.   +|.    ++.+|+||+|||.+|.  +.++....+. ...+..+.........+..  .  ....
T Consensus       218 ~~~~~~~~vv~~~---dG~----~i~A~lVI~AdG~~S~--rl~~~~~~~~~~~~Q~a~Gi~ve~~~~~~d--~--~~~v  284 (529)
T PLN02697        218 TEASDGLRLVACE---DGR----VIPCRLATVASGAASG--RLLQYEVGGPRVCVQTAYGVEVEVENNPYD--P--SLMV  284 (529)
T ss_pred             EEcCCcEEEEEEc---CCc----EEECCEEEECCCcChh--hhhccccCCCCcccEEEEEEEEEecCCCCC--c--chhe
Confidence            8876765543 33   453    7899999999999993  2332211111 2233333333332221110  1  1112


Q ss_pred             EEEEcc-----------CceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhh---CCCCCCeeEEEeece
Q 012845          279 FFIFNT-----------EAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLV---GWELSDIDVIDIKPW  344 (455)
Q Consensus       279 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~  344 (455)
                      ++.+..           +...+++.+|...++..+.-....   .....+.+.+.+.+.+++   ++....+........
T Consensus       285 lMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l~---~~~~l~~~~l~~~L~~~l~~~Gi~~~~i~~~E~g~i  361 (529)
T PLN02697        285 FMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETCLA---SKDAMPFDLLKKRLMSRLETMGIRILKTYEEEWSYI  361 (529)
T ss_pred             eeccccccccccccccCCCceEEEEeecCCCeEEEEEeeec---cCCCCCHHHHHHHHHHHHHhCCCCcceEEEEEeeee
Confidence            222111           122333444444444433211100   011223455555555544   333233333333445


Q ss_pred             EeceeeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCC----------CCchhhhhHHHhhh
Q 012845          345 VMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI----------APASILNTYETERK  414 (455)
Q Consensus       345 ~~~~~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~----------~~~~al~~Y~~~r~  414 (455)
                      |+...... .   .+++++|||||+.++|.+|.|+..++.+|..+|++|+++++..          ....+++.|++++.
T Consensus       362 Pm~g~~~~-~---~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~  437 (529)
T PLN02697        362 PVGGSLPN-T---EQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWP  437 (529)
T ss_pred             cCCCCCcc-c---CCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhCh
Confidence            55432222 2   3899999999999999999999999999999999999998643          23577899999888


Q ss_pred             HHHHHhHHhH
Q 012845          415 PIAEFNTALS  424 (455)
Q Consensus       415 ~~~~~~~~~s  424 (455)
                      .+..+...+.
T Consensus       438 ~e~~r~~~~~  447 (529)
T PLN02697        438 QERKRQRAFF  447 (529)
T ss_pred             HHHHHHHHHH
Confidence            8765544443

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=99.94  E-value=9e-25  Score=203.37  Aligned_cols=349  Identities=19%  Similarity=0.187  Sum_probs=221.7

Q ss_pred             CCCcccccCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCC-
Q 012845           32 SDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQP-  110 (455)
Q Consensus        32 ~~~~~~~~~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~-  110 (455)
                      ++.....+.....||+|||||++|.++|+.|+|.|.+|+|+||+-....+.-|..++|.+...|.++ |+.|.++.... 
T Consensus        34 ~~~~~~~~~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~L-Gl~Dcve~IDAQ  112 (509)
T KOG1298|consen   34 AETSVEARNDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKL-GLEDCVEGIDAQ  112 (509)
T ss_pred             chhhhhhccCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHh-CHHHHhhcccce
Confidence            3333344446679999999999999999999999999999999988778888999999999999999 99999988533 


Q ss_pred             CcccccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccce
Q 012845          111 PVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGRE  190 (455)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  190 (455)
                      +...+   .++.  +|....-...  ..++   .....+..+....+.+-|++.+..+..                  ++
T Consensus       113 ~v~Gy---~ifk--~gk~v~~pyP--~~~f---~~d~~GrsFhnGRFvq~lR~ka~slpN------------------V~  164 (509)
T KOG1298|consen  113 RVTGY---AIFK--DGKEVDLPYP--LKNF---PSDPSGRSFHNGRFVQRLRKKAASLPN------------------VR  164 (509)
T ss_pred             Eeeee---EEEe--CCceeeccCC--CcCC---CCCcccceeeccHHHHHHHHHHhcCCC------------------eE
Confidence            23222   1221  3332221111  1111   123335567777899999998877653                  45


Q ss_pred             EEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccc
Q 012845          191 ILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDY  269 (455)
Q Consensus       191 i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (455)
                      +..+ .|.++-.+++.++ |+..   +..+.+.+..|.+-|.|||..|.+|+.+-.+.... -...++.....-.     
T Consensus       165 ~eeG-tV~sLlee~gvvkGV~yk---~k~gee~~~~ApLTvVCDGcfSnlRrsL~~~~v~~-V~S~fVG~vl~N~-----  234 (509)
T KOG1298|consen  165 LEEG-TVKSLLEEEGVVKGVTYK---NKEGEEVEAFAPLTVVCDGCFSNLRRSLCDPKVEE-VPSYFVGLVLKNC-----  234 (509)
T ss_pred             Eeee-eHHHHHhccCeEEeEEEe---cCCCceEEEecceEEEecchhHHHHHHhcCCcccc-cchheeeeeecCC-----
Confidence            5444 4555555555444 4554   33344467889999999999999999994322110 1111111111111     


Q ss_pred             cccCCCceEEEEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCH----------------HHHHHHHHHhhCCCC
Q 012845          270 LLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSP----------------EICEKLIFKLVGWEL  333 (455)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~  333 (455)
                       ....|+..+.++.......++.......++.+.++-.    .+.....                +.+.+.+.+..    
T Consensus       235 -~l~~p~hghvIL~~pspil~Y~ISStEvRcl~~v~g~----~~Psi~~gem~~~mk~~v~PqiP~~lR~~F~~av----  305 (509)
T KOG1298|consen  235 -RLPAPNHGHVILSKPSPILVYQISSTEVRCLVDVPGQ----KLPSIANGEMATYMKESVAPQIPEKLRESFLEAV----  305 (509)
T ss_pred             -CCCCCCcceEEecCCCcEEEEEecchheEEEEecCcc----cCCcccchhHHHHHHHhhCcCCCHHHHHHHHHHh----
Confidence             1234555666666555555666666666666665421    1111111                11222222211    


Q ss_pred             CCeeEEEeeceEeceeeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHc---CCCCchhhhhHH
Q 012845          334 SDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK---DIAPASILNTYE  410 (455)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~---~~~~~~al~~Y~  410 (455)
                      ++..+   ..  ++-...+...+...+++++|||..+-||.+|.||.-|+.|..+|-+.|.-..+   .....+.++.|.
T Consensus       306 ~~g~i---rs--mpn~~mpa~~~~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll~pl~dL~d~ekv~~~i~sFy  380 (509)
T KOG1298|consen  306 DEGNI---RS--MPNSSMPATLNDKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLLKPLPDLSDAEKVSDYIKSFY  380 (509)
T ss_pred             hccch---hc--CccccCCCCcCCCCceEEEcccccccCCccCCceEeehhHHHHHHHHhccccccccHHHHHHHHHHHH
Confidence            11111   11  11111222222347999999999999999999999999999999988865321   112347789999


Q ss_pred             HhhhHHHHHhHHhHHHHHHHHhc
Q 012845          411 TERKPIAEFNTALSVQNFRAAME  433 (455)
Q Consensus       411 ~~r~~~~~~~~~~s~~~~~~~~~  433 (455)
                      -.|++....+.-++..+|+-+..
T Consensus       381 ~~RKp~s~tINtLa~Aly~vf~a  403 (509)
T KOG1298|consen  381 WIRKPYSATINTLANALYQVFVA  403 (509)
T ss_pred             HhhcchhHHHHHHHHHHHHHhcC
Confidence            99999999999999999987653

>PLN02463 lycopene beta cyclase

Probab=99.93  E-value=1.6e-23  Score=210.27  Aligned_cols=329  Identities=14%  Similarity=0.164  Sum_probs=192.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      ...+||+||||||||+++|+.|++.|++|.|||+.+... ..+.+++.   .+.++.+ |+.+.+...      |.....
T Consensus        26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~-~p~~~g~w---~~~l~~l-gl~~~l~~~------w~~~~v   94 (447)
T PLN02463         26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSI-WPNNYGVW---VDEFEAL-GLLDCLDTT------WPGAVV   94 (447)
T ss_pred             ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccch-hccccchH---HHHHHHC-CcHHHHHhh------CCCcEE
Confidence            456899999999999999999999999999999975431 11222221   2346666 777766432      222222


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                      .... +....              ....+..++|..|.+.|++.+.+.|+                   +++ ..+|+++
T Consensus        95 ~~~~-~~~~~--------------~~~~y~~V~R~~L~~~Ll~~~~~~GV-------------------~~~-~~~V~~I  139 (447)
T PLN02463         95 YIDD-GKKKD--------------LDRPYGRVNRKKLKSKMLERCIANGV-------------------QFH-QAKVKKV  139 (447)
T ss_pred             EEeC-CCCcc--------------ccCcceeEEHHHHHHHHHHHHhhcCC-------------------EEE-eeEEEEE
Confidence            1111 10000              01224568999999999999988876                   665 5799999


Q ss_pred             eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEE
Q 012845          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF  280 (455)
Q Consensus       201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (455)
                      +..++.+.|++.   +|.    ++++|+||+|||.+|.+.+.-.   .....++..+...........    ......++
T Consensus       140 ~~~~~~~~V~~~---dG~----~i~A~lVI~AdG~~s~l~~~~~---~~~~g~Q~a~Gi~~ev~~~p~----d~~~~vlM  205 (447)
T PLN02463        140 VHEESKSLVVCD---DGV----KIQASLVLDATGFSRCLVQYDK---PFNPGYQVAYGILAEVDSHPF----DLDKMLFM  205 (447)
T ss_pred             EEcCCeEEEEEC---CCC----EEEcCEEEECcCCCcCccCCCC---CCCccceeeeeEEeecCCCCc----ccccchhh
Confidence            988887777776   664    7899999999999998764321   111223333322222111110    00011111


Q ss_pred             EEccCc--------------eEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhh---CCCCCCeeEEEeec
Q 012845          281 IFNTEA--------------IGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLV---GWELSDIDVIDIKP  343 (455)
Q Consensus       281 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~  343 (455)
                      .+....              ..+++..|.+.++..+.....   ......+.+.+.+.+.+++   +.....+.......
T Consensus       206 D~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~vEeT~l---~s~~~~~~~~lk~~L~~~l~~~Gi~~~~i~~~E~~~  282 (447)
T PLN02463        206 DWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIFLEETSL---VARPGLPMDDIQERMVARLRHLGIKVKSVEEDEKCV  282 (447)
T ss_pred             hcChhhccccchhhhccCCCCceEEEEecCCCeEEEEeeee---ecCCCCCHHHHHHHHHHHHHHCCCCcceeeeeeeeE
Confidence            111000              123334444444433221100   0111223445555555443   32222222222233


Q ss_pred             eEeceeeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCC---------c---hhhhhHHH
Q 012845          344 WVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAP---------A---SILNTYET  411 (455)
Q Consensus       344 ~~~~~~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~---------~---~al~~Y~~  411 (455)
                      .|+.... + ..  .+++++|||||+.++|.+|.|+..++..|..+++++.++++....         .   +.|..|++
T Consensus       283 IPmg~~~-~-~~--~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~lw~~~~  358 (447)
T PLN02463        283 IPMGGPL-P-VI--PQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGSSRSNSFRGDELSAEVWNDLWPIER  358 (447)
T ss_pred             eeCCCCC-C-CC--CCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHhcCCCcCCChHHHHHHHHHHhCCHhH
Confidence            4443221 1 22  379999999999999999999999999999999999999864433         1   56777777


Q ss_pred             hhhHHH-----HHhHH----hHHHHHHHHhcccc
Q 012845          412 ERKPIA-----EFNTA----LSVQNFRAAMEVPS  436 (455)
Q Consensus       412 ~r~~~~-----~~~~~----~s~~~~~~~~~~~~  436 (455)
                      .|+.+.     +.+++    .-+.+|..++++|.
T Consensus       359 ~~~~~~~~fg~~~l~~~~~~~~~~ff~~ff~l~~  392 (447)
T PLN02463        359 RRQREFFCFGMDILLKLDLDGTRRFFDAFFDLEP  392 (447)
T ss_pred             hHhHHHHHhHHHHHHcCChHHHHHHHHHHHcCCH
Confidence            776554     23333    34666777777763

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=99.91  E-value=2.5e-22  Score=198.25  Aligned_cols=305  Identities=12%  Similarity=0.156  Sum_probs=175.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCC--CcccccceEE
Q 012845           45 PVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQP--PVDLWRKFIY  120 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~--~~~~~~~~~~  120 (455)
                      ||+|||||+||+++|+.|++.  |++|+|+|+.+..... ..+.+.        .. ++.+.....-.  ....|..+.+
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~-~tw~~~--------~~-~~~~~~~~~~~~~v~~~W~~~~v   70 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN-HTWSFF--------DS-DLSDAQHAWLADLVQTDWPGYEV   70 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc-ccceec--------cc-ccchhhhhhhhhhheEeCCCCEE
Confidence            899999999999999999987  9999999998644311 111111        11 22111111000  0123443333


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                      ........+                +..+..|.+.+|.+.|++.+..                      .++.+.+|+++
T Consensus        71 ~~~~~~~~l----------------~~~Y~~I~r~~f~~~l~~~l~~----------------------~i~~~~~V~~v  112 (370)
T TIGR01789        71 RFPKYRRKL----------------KTAYRSMTSTRFHEGLLQAFPE----------------------GVILGRKAVGL  112 (370)
T ss_pred             ECcchhhhc----------------CCCceEEEHHHHHHHHHHhhcc----------------------cEEecCEEEEE
Confidence            321111110                1234678899999999776533                      36678999988


Q ss_pred             eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEE
Q 012845          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF  280 (455)
Q Consensus       201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (455)
                      +  ++++  ++.   +|.    ++++|+||+|+|.+|.-...        ..++..+.........   .....+..+-+
T Consensus       113 ~--~~~v--~l~---dg~----~~~A~~VI~A~G~~s~~~~~--------~~~Q~f~G~~~r~~~p---~~~~~~~lMD~  170 (370)
T TIGR01789       113 D--ADGV--DLA---PGT----RINARSVIDCRGFKPSAHLK--------GGFQVFLGREMRLQEP---HGLENPIIMDA  170 (370)
T ss_pred             e--CCEE--EEC---CCC----EEEeeEEEECCCCCCCcccc--------ceeeEEEEEEEEEcCC---CCCCccEEEee
Confidence            3  3443  334   665    78999999999999752111        2344444444333211   11222222222


Q ss_pred             EEc-cCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhh---CCCCCCeeEEEeeceEecee--eeccc
Q 012845          281 IFN-TEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLV---GWELSDIDVIDIKPWVMHAE--VAEKF  354 (455)
Q Consensus       281 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~  354 (455)
                      ... .++..+.+..|...++..+.-+...+   ....+.+.+.+.+..+.   ++....+.......+|+...  ....+
T Consensus       171 ~~~q~~g~~F~Y~lP~~~~~~lvE~T~~s~---~~~l~~~~l~~~l~~~~~~~g~~~~~i~~~e~g~iPm~~~~~~~~~~  247 (370)
T TIGR01789       171 TVDQLAGYRFVYVLPLGSHDLLIEDTYYAD---DPLLDRNALSQRIDQYARANGWQNGTPVRHEQGVLPVLLGGDFSAYQ  247 (370)
T ss_pred             eccCCCCceEEEECcCCCCeEEEEEEeccC---CCCCCHHHHHHHHHHHHHHhCCCceEEEEeeeeEEeeecCCCccccc
Confidence            222 34455556677777776665332222   22334555555555543   44434433333344454321  11112


Q ss_pred             ccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHH
Q 012845          355 LCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSV  425 (455)
Q Consensus       355 ~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~  425 (455)
                      .. .++++++|||||.++|.+|+|++.+++||..|++++.-  ++.....++..|.+.|+.+.......-+
T Consensus       248 ~~-~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (370)
T TIGR01789       248 DE-VRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPDL--SSEQLAAFIDSRARRHWSKTGYYRLLNR  315 (370)
T ss_pred             cc-CCceeeeecccccccccccccHHHHHHHHHHHHhccCc--CccchhhhhhHHHHHHHHHhHHHHHHHH
Confidence            21 36799999999999999999999999999999988841  1223345678888887777665544333

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=99.90  E-value=3.7e-22  Score=201.70  Aligned_cols=335  Identities=16%  Similarity=0.215  Sum_probs=185.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC---CCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHH--HHhcCCCc------c
Q 012845           45 PVLIVGAGPVGLVLSILLTKLG---IKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEE--IERSQPPV------D  113 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g---~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~--l~~~~~~~------~  113 (455)
                      ||+|||||+||.++|..|++.+   ++|+|||+...+. .+-|....|....+++.+ |+.+.  +.+.....      .
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~-~~vGe~~~p~~~~~~~~l-gi~e~~~~~~~~~~~k~g~~f~   78 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPR-IGVGESTLPSLRPFLRRL-GIDEADFMRACDATFKLGIRFV   78 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS----SSEEE--THHHHCHHHH-T--HHHHCHHCT-EEESEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCC-CCccccchHHHHHHHHHc-CCChHHHHHHhCCeEeccEEee
Confidence            7999999999999999999998   8999999887654 344566777788889999 99876  44432211      1


Q ss_pred             ccc----ceEEeecCCCCcccccc----C------CCcc---------------cc-----ccccCCccccccchhhHHH
Q 012845          114 LWR----KFIYCTSVTGPILGSVD----H------MQPQ---------------DF-----EKVVSPVSVAHFSQYKLNK  159 (455)
Q Consensus       114 ~~~----~~~~~~~~~~~~~~~~~----~------~~~~---------------~~-----~~~~~~~~~~~i~r~~l~~  159 (455)
                      .|.    .+..-+...|......+    +      ....               .+     .........++++|..+.+
T Consensus        79 ~w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~  158 (454)
T PF04820_consen   79 NWGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQ  158 (454)
T ss_dssp             SSSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHH
T ss_pred             ecCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHH
Confidence            122    11111111111111100    0      0000               00     0011123468899999999


Q ss_pred             HHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceE--EEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          160 LLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN--VIASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       160 ~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~--v~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                      .|++.+.+.|+                   +++.+ +|+.+..++++..  |++.   +|.    ++++|++|+|+|..|
T Consensus       159 ~L~~~A~~~Gv-------------------~~~~g-~V~~v~~~~~g~i~~v~~~---~g~----~i~ad~~IDASG~~s  211 (454)
T PF04820_consen  159 FLRRHAEERGV-------------------EVIEG-TVVDVELDEDGRITAVRLD---DGR----TIEADFFIDASGRRS  211 (454)
T ss_dssp             HHHHHHHHTT--------------------EEEET--EEEEEE-TTSEEEEEEET---TSE----EEEESEEEE-SGGG-
T ss_pred             HHHHHHhcCCC-------------------EEEeC-EEEEEEEcCCCCEEEEEEC---CCC----EEEEeEEEECCCccc
Confidence            99999999997                   77776 5788877666543  4433   554    899999999999999


Q ss_pred             hhhhh-cCCCccCCcccc---eeEEEEEecCCcccccccCCCceEEEEEccCceEEEEeecCCCCeEEEEeecCCCCCCC
Q 012845          238 TVRKL-VGIDLVGEKDLQ---KLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNL  313 (455)
Q Consensus       238 ~vr~~-l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (455)
                      .+.++ ++..+.......   ..+........      ...+.+.... .+.+  |++..|..+.... ...+..     
T Consensus       212 ~L~~~~L~~~~~~~~~~L~~d~av~~~~~~~~------~~~~~T~~~a-~~~G--W~W~IPL~~~~~~-G~V~s~-----  276 (454)
T PF04820_consen  212 LLARKALKVGFRDWSDWLPNDRAVAVQVPNED------PPEPYTRSTA-FEAG--WIWYIPLQNRRGS-GYVYSS-----  276 (454)
T ss_dssp             CCCCCCT-EEEEEETTTCEEEEEEEEEEE-SS------CTTSSEEEEE-ESSE--EEEEEEESSEEEE-EEEEET-----
T ss_pred             hhhHhhhcCCCccccccccccEEEEEecCcCC------CCCCceeEEe-cCCc--eEEEccCCCcceE-EEEecc-----
Confidence            98776 332222221111   11122211111      1233333332 2333  4444444443333 221111     


Q ss_pred             CCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEeceeeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHH
Q 012845          314 EDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKI  393 (455)
Q Consensus       314 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L  393 (455)
                      ...+++...+.+.+.++.......    ...++.........  .+|+++|||||++++|+.++|+.+++..+..|++.|
T Consensus       277 ~~~s~~~A~~~l~~~l~~~~~~~~----~~i~~~~g~~~~~~--~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l  350 (454)
T PF04820_consen  277 DFISDDEAEAELLAYLGGSPEAEP----RHIRFRSGRRKQFW--GKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEAL  350 (454)
T ss_dssp             TTSHHHHHHHHHHHHHTCHCTTSC----EEEE-S-EEESSSE--ETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTH
T ss_pred             ccCCHHHHHHHHHHhcchhhhcch----hhhcccccchhhcc--cCCEEEEcchhhccCccccccHHHHHHHHHHHHHhc
Confidence            111444444445554443322211    11122222233333  389999999999999999999999999888888777


Q ss_pred             HHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHh
Q 012845          394 ASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAM  432 (455)
Q Consensus       394 ~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~  432 (455)
                      ..   ......+++.|++..+...+.+.++-..+|..-.
T Consensus       351 ~~---~~~~~~~~~~Yn~~~~~~~~~~~~fi~~hY~~~~  386 (454)
T PF04820_consen  351 PD---DDFSPAALDRYNRRMRREYERIRDFISLHYQLSR  386 (454)
T ss_dssp             HC---TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred             cc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            63   3345789999999999999999999999988533

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=99.88  E-value=4e-20  Score=183.35  Aligned_cols=282  Identities=16%  Similarity=0.212  Sum_probs=170.4

Q ss_pred             CEEEECCCHHHHHHHHHH--HhCCCCEEEEcCCCCCC-CCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEe
Q 012845           45 PVLIVGAGPVGLVLSILL--TKLGIKCSVLEKNKAFS-THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~L--a~~g~~V~l~Er~~~~~-~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~  121 (455)
                      ||+||||||||+++|+.|  ++.|.+|+|+|+.+... ...+.+.......       +..+.+..     ..|....+.
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~-------~~~~~~v~-----~~w~~~~v~   68 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDL-------GPLDSLVS-----HRWSGWRVY   68 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccc-------cchHHHHh-----eecCceEEE
Confidence            899999999999999999  77899999999987651 2222222221111       11222222     234433333


Q ss_pred             ecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEee
Q 012845          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (455)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~  201 (455)
                      .........               ...+..+++..|.+.|.+.+.. +.                   .++.+.+|++++
T Consensus        69 ~~~~~~~~~---------------~~~Y~~i~~~~f~~~l~~~~~~-~~-------------------~~~~~~~V~~i~  113 (374)
T PF05834_consen   69 FPDGSRILI---------------DYPYCMIDRADFYEFLLERAAA-GG-------------------VIRLNARVTSIE  113 (374)
T ss_pred             eCCCceEEc---------------ccceEEEEHHHHHHHHHHHhhh-CC-------------------eEEEccEEEEEE
Confidence            322111110               1235678999999999999984 43                   678999999999


Q ss_pred             ecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEEE
Q 012845          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI  281 (455)
Q Consensus       202 ~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (455)
                      ..++...+++.   +|.    ++++++||+|+|..+...+..        .++..+...........  ....+...-+.
T Consensus       114 ~~~~~~~v~~~---~g~----~i~a~~VvDa~g~~~~~~~~~--------~~Q~f~G~~v~~~~~~f--~~~~~~lMD~r  176 (374)
T PF05834_consen  114 ETGDGVLVVLA---DGR----TIRARVVVDARGPSSPKARPL--------GLQHFYGWEVETDEPVF--DPDTATLMDFR  176 (374)
T ss_pred             ecCceEEEEEC---CCC----EEEeeEEEECCCccccccccc--------ccceeEEEEEeccCCCC--CCCceEEEEec
Confidence            98887777776   776    889999999999776522222        23444444433332211  11122212222


Q ss_pred             Ecc--CceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHh---hCCCCCCeeEEEeeceEeceeeeccccc
Q 012845          282 FNT--EAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKL---VGWELSDIDVIDIKPWVMHAEVAEKFLC  356 (455)
Q Consensus       282 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (455)
                      ...  ++..+++..|...++..+..+...+.   ...+.+.+.+.+.++   .++....+.......+|+......+.. 
T Consensus       177 ~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~~---~~~~~~~~~~~l~~~l~~~g~~~~~i~~~E~G~IPm~~~~~~~~~-  252 (374)
T PF05834_consen  177 VPQSADGPSFLYVLPFSEDRALVEETSFSPR---PALPEEELKARLRRYLERLGIDDYEILEEERGVIPMTTGGFPPRF-  252 (374)
T ss_pred             ccCCCCCceEEEEEEcCCCeEEEEEEEEcCC---CCCCHHHHHHHHHHHHHHcCCCceeEEEeecceeecccCCCcccc-
Confidence            221  24455566666666655543332221   123444455554444   344444333334445666322222222 


Q ss_pred             CCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHH
Q 012845          357 CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIAS  395 (455)
Q Consensus       357 ~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~  395 (455)
                       .++++.+|+|++.++|.+|.++..++..+..+++.|.+
T Consensus       253 -~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~  290 (374)
T PF05834_consen  253 -GQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAK  290 (374)
T ss_pred             -CCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence             27899999999999999999999999999999988875

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria

Probab=99.61  E-value=6.7e-15  Score=135.25  Aligned_cols=190  Identities=18%  Similarity=0.144  Sum_probs=120.8

Q ss_pred             eCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEEEEccCceEEEEeecCCCCeEEEEee
Q 012845          226 CNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVP  305 (455)
Q Consensus       226 ~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (455)
                      |.++|+|||..|.+|+.+..  ........++........      .+.++..+.+....+...++.......+..+.++
T Consensus         2 A~LtivaDG~~S~fRk~l~~--~~~~v~S~fvGl~l~~~~------lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp   73 (276)
T PF08491_consen    2 APLTIVADGCFSKFRKELSD--NKPQVRSYFVGLILKDAP------LPKPNHGHVILGKPGPILLYQISSNETRVLVDVP   73 (276)
T ss_pred             CCEEEEecCCchHHHHhhcC--CCCceeeeEEEEEEcCCC------CCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeC
Confidence            68999999999999999962  222233333433333322      2345566667777666677766666677777766


Q ss_pred             cC-CCCCCCCCCCHHHHHHH------------HHHhhCCCCCCeeEEEeeceEeceeeecccccCCCcEEEEcCccccCC
Q 012845          306 FY-PPQQNLEDFSPEICEKL------------IFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFP  372 (455)
Q Consensus       306 ~~-~~~~~~~~~~~~~~~~~------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAAh~~~  372 (455)
                      .. .|.     .+...+.+.            ++..+....+..   .....|..  ..+.......+++++|||++..|
T Consensus        74 ~~k~P~-----~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~---rirsMPn~--~lp~~~~~~~G~vllGDA~nmrH  143 (276)
T PF08491_consen   74 GPKLPS-----VSNGELKEYLREVVAPQLPEELRPSFEKALEDG---RIRSMPNS--FLPASPNWKPGVVLLGDAANMRH  143 (276)
T ss_pred             CCccCC-----ccchHHHHHHHHHHHhhchHHHHHHHHHHhccC---Ccceeccc--ccCCCCCCCCCEEEEehhhcCcC
Confidence            43 121     111112221            111111111111   11112211  11111112478999999999999


Q ss_pred             CCcCccchhhHHHHHHHHHHHHHhH--cC-CCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHhc
Q 012845          373 PAGGFGMNTGVQDAHNLAWKIASVL--KD-IAPASILNTYETERKPIAEFNTALSVQNFRAAME  433 (455)
Q Consensus       373 P~~G~G~~~Al~da~~La~~L~~~~--~~-~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~  433 (455)
                      |++|+||+.|+.|+.+|++.|....  .+ ....++++.|..+|++....+.-+|..+|..+..
T Consensus       144 PLTGgGMTVAl~Dv~lL~~lL~~~~dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~aLY~lF~a  207 (276)
T PF08491_consen  144 PLTGGGMTVALNDVVLLRDLLSPIPDLSDTKAVLEALKKFHWKRKPLSSVINILAQALYSLFAA  207 (276)
T ss_pred             CccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhC
Confidence            9999999999999999999998761  11 1245799999999999999999999999987764

SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.54  E-value=2.2e-14  Score=136.73  Aligned_cols=151  Identities=22%  Similarity=0.279  Sum_probs=99.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC-----cccccCh--hHHHHHHhhhchHHHH---HhcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP-----QAHFINN--RYALVFRKLDGLAEEI---ERSQPP  111 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~-----~~~~l~~--~~~~~l~~~~gl~~~l---~~~~~~  111 (455)
                      +.+||+||||||||++||+.++++|.+|+|||+.+.+..+.     ....++.  ..-+++.+.|+=...+   .....+
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~   81 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP   81 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence            57899999999999999999999999999999999875422     1122221  1334444444111111   111111


Q ss_pred             cccccc-----eEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCccccccccc
Q 012845          112 VDLWRK-----FIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLL  186 (455)
Q Consensus       112 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~  186 (455)
                      .+....     ..++....|.++.                   ....-..+.++|+.++++.|+                
T Consensus        82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp-------------------~sdkA~~Iv~~ll~~~~~~gV----------------  126 (408)
T COG2081          82 EDFIDWVEGLGIALKEEDLGRMFP-------------------DSDKASPIVDALLKELEALGV----------------  126 (408)
T ss_pred             HHHHHHHHhcCCeeEEccCceecC-------------------CccchHHHHHHHHHHHHHcCc----------------
Confidence            111000     1111111222211                   112346799999999999997                


Q ss_pred             ccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          187 QGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       187 ~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                         +++.+++|.+++.++....+.+.   +|.    ++.||-+|.|+|..|
T Consensus       127 ---~i~~~~~v~~v~~~~~~f~l~t~---~g~----~i~~d~lilAtGG~S  167 (408)
T COG2081         127 ---TIRTRSRVSSVEKDDSGFRLDTS---SGE----TVKCDSLILATGGKS  167 (408)
T ss_pred             ---EEEecceEEeEEecCceEEEEcC---CCC----EEEccEEEEecCCcC
Confidence               99999999999998877778776   775    789999999999666

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.51  E-value=3e-13  Score=126.63  Aligned_cols=144  Identities=18%  Similarity=0.242  Sum_probs=95.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCccc--c-----cChhHHHHHHhhhchHHHHHhcCCCcc
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAH--F-----INNRYALVFRKLDGLAEEIERSQPPVD  113 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~--~-----l~~~~~~~l~~~~gl~~~l~~~~~~~~  113 (455)
                      ...+||+||||||||+++|+.|++.|++|+|+||...+.....+.  .     +......+|+++          +.+..
T Consensus        23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~----------gv~~~   92 (257)
T PRK04176         23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEF----------GIRYK   92 (257)
T ss_pred             hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHC----------CCCce
Confidence            346899999999999999999999999999999998764221111  1     111112222222          21110


Q ss_pred             cccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEe
Q 012845          114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILM  193 (455)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~  193 (455)
                      .        .                      ....+.+++..+...|.+.+.+.|+                   ++++
T Consensus        93 ~--------~----------------------~~g~~~vd~~~l~~~L~~~A~~~Gv-------------------~I~~  123 (257)
T PRK04176         93 E--------V----------------------EDGLYVADSVEAAAKLAAAAIDAGA-------------------KIFN  123 (257)
T ss_pred             e--------e----------------------cCcceeccHHHHHHHHHHHHHHcCC-------------------EEEc
Confidence            0        0                      0012346788999999999999887                   9999


Q ss_pred             ccEEEEeeecCC-ceE-EEEEec---cCC-cceeEEEEeCEEEeecCCCchhhhhc
Q 012845          194 GHECVSVSATDQ-CIN-VIASFL---KEG-KCTERNIQCNILIGTDGAGSTVRKLV  243 (455)
Q Consensus       194 ~~~v~~i~~~~~-~~~-v~~~~~---~~g-~~~~~~~~~d~vV~AdG~~S~vr~~l  243 (455)
                      +++|+++..+++ .+. +.+.+.   .++ .....++++++||+|+|.+|.+.+.+
T Consensus       124 ~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l  179 (257)
T PRK04176        124 GVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVL  179 (257)
T ss_pred             CceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHH
Confidence            999999987555 332 222210   011 11234789999999999999998887

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.49  E-value=1.2e-11  Score=123.31  Aligned_cols=177  Identities=20%  Similarity=0.267  Sum_probs=99.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC----CCcccccC----hh-H-HHHHHhhhchHHHHHhc-CCCc
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST----HPQAHFIN----NR-Y-ALVFRKLDGLAEEIERS-QPPV  112 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~----~~~~~~l~----~~-~-~~~l~~~~gl~~~l~~~-~~~~  112 (455)
                      +||+|||||++|+++|+.|+++|.+|+|+||...+..    ...+..+.    .. . ......+ .++.++.+. +...
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~~~~~~~~l~~~s~-~~~~~l~~~~~~~~   79 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDFYTPMMLECY-QLWAQLEKEAGTKL   79 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCCCCCCCCeeeeeccCchhHhHHHHHHH-HHHHHHHHHhCCee
Confidence            5999999999999999999999999999999765321    11111111    01 1 1112222 445555332 1111


Q ss_pred             ccccceEEeecCCCCcccc-------c----cCCCcccccccc------------CCccccccchhhHHHHHHHHHHhcc
Q 012845          113 DLWRKFIYCTSVTGPILGS-------V----DHMQPQDFEKVV------------SPVSVAHFSQYKLNKLLLKQLEKLN  169 (455)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~-------~----~~~~~~~~~~~~------------~~~~~~~i~r~~l~~~L~~~~~~~g  169 (455)
                      ................+..       .    ......+.....            .......++...+.+.|.+.+.+.|
T Consensus        80 ~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~~~~~~~g  159 (380)
T TIGR01377        80 HRQTGLLLLGPKENQFLKTIQATLSRHGLEHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQELAEAHG  159 (380)
T ss_pred             EeecCeEEEcCCCcHHHHHHHHHHHHcCCCeEEcCHHHHHHhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHHHHHHHcC
Confidence            0001111111100000000       0    000000000000            0112345667788889999888888


Q ss_pred             cccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCC-chhhhhcCCCcc
Q 012845          170 FKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAG-STVRKLVGIDLV  248 (455)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~-S~vr~~l~~~~~  248 (455)
                      +                   +++.+++|++++.+++.+.|.+.   ++     ++.+|.||.|+|.+ +.+++.++....
T Consensus       160 ~-------------------~~~~~~~V~~i~~~~~~~~v~~~---~~-----~i~a~~vV~aaG~~~~~l~~~~g~~~~  212 (380)
T TIGR01377       160 A-------------------TVRDGTKVVEIEPTELLVTVKTT---KG-----SYQANKLVVTAGAWTSKLLSPLGIEIP  212 (380)
T ss_pred             C-------------------EEECCCeEEEEEecCCeEEEEeC---CC-----EEEeCEEEEecCcchHHHhhhcccCCC
Confidence            6                   89999999999887777666544   44     67899999999876 557777764433

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.49  E-value=7.3e-13  Score=123.60  Aligned_cols=143  Identities=18%  Similarity=0.245  Sum_probs=94.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccc-------cChhHHHHHHhhhchHHHHHhcCCCccc
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHF-------INNRYALVFRKLDGLAEEIERSQPPVDL  114 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~-------l~~~~~~~l~~~~gl~~~l~~~~~~~~~  114 (455)
                      ..+||+||||||+||++|+.|+++|++|+|+||+..+.....+.+       +.....++++++          +.+...
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~----------gi~~~~   89 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEF----------GIRYED   89 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHC----------CCCeee
Confidence            468999999999999999999999999999999987632211111       011111111111          111100


Q ss_pred             ccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEec
Q 012845          115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG  194 (455)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~  194 (455)
                                .                    .......++..+.+.|.+.+.+.|+                   +++++
T Consensus        90 ----------~--------------------~~g~~~~~~~el~~~L~~~a~e~GV-------------------~I~~~  120 (254)
T TIGR00292        90 ----------E--------------------GDGYVVADSAEFISTLASKALQAGA-------------------KIFNG  120 (254)
T ss_pred             ----------c--------------------cCceEEeeHHHHHHHHHHHHHHcCC-------------------EEECC
Confidence                      0                    0112234678899999999999887                   99999


Q ss_pred             cEEEEeeecCCc--eE-EEEEec---cCCc-ceeEEEEeCEEEeecCCCchhhhhc
Q 012845          195 HECVSVSATDQC--IN-VIASFL---KEGK-CTERNIQCNILIGTDGAGSTVRKLV  243 (455)
Q Consensus       195 ~~v~~i~~~~~~--~~-v~~~~~---~~g~-~~~~~~~~d~vV~AdG~~S~vr~~l  243 (455)
                      ++|.++..+++.  +. +.+.+.   ..+. ....++.+++||+|+|..|.+.+.+
T Consensus       121 t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l  176 (254)
T TIGR00292       121 TSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVC  176 (254)
T ss_pred             cEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHH
Confidence            999999876663  32 222210   0110 1134789999999999999888777

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=99.46  E-value=7.2e-12  Score=118.83  Aligned_cols=345  Identities=20%  Similarity=0.191  Sum_probs=169.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC------CCCEEEEcCCCCCCCCC-cccccChhHHHHHHhhhchHHHHHhcCCCcc
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKL------GIKCSVLEKNKAFSTHP-QAHFINNRYALVFRKLDGLAEEIERSQPPVD  113 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~------g~~V~l~Er~~~~~~~~-~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~  113 (455)
                      ...+||+|||||||||++|+.|.|.      .++|.|+||...+..+. .|-.|.|.+++-|      .+...+.+.|..
T Consensus        74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL------~P~wke~~apl~  147 (621)
T KOG2415|consen   74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDEL------LPDWKEDGAPLN  147 (621)
T ss_pred             hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhh------CcchhhcCCccc
Confidence            3468999999999999999999765      57899999998875433 3445555443221      222223233221


Q ss_pred             cc---cceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccce
Q 012845          114 LW---RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGRE  190 (455)
Q Consensus       114 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  190 (455)
                      .-   ..+.+.   .+......+...+.+      ...-+.++-..|.++|-+.+++.|+++-++.++        +++-
T Consensus       148 t~vT~d~~~fL---t~~~~i~vPv~~pm~------NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aa--------Sevl  210 (621)
T KOG2415|consen  148 TPVTSDKFKFL---TGKGRISVPVPSPMD------NHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAA--------SEVL  210 (621)
T ss_pred             ccccccceeee---ccCceeecCCCcccc------cCCcEEEEHHHHHHHHHHHHHhhCceeccccch--------hhee
Confidence            10   111111   111111111111111      112345677899999999999999965555544        1112


Q ss_pred             EEeccEEEEeeecCCceEEEEEeccCCcce-----eEEEEeCEEEeecCCCchhhhhc----CCC--ccCCcccceeEEE
Q 012845          191 ILMGHECVSVSATDQCINVIASFLKEGKCT-----ERNIQCNILIGTDGAGSTVRKLV----GID--LVGEKDLQKLVSV  259 (455)
Q Consensus       191 i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~-----~~~~~~d~vV~AdG~~S~vr~~l----~~~--~~~~~~~~~~~~~  259 (455)
                      +..+..|+.|...+-++.      ++|...     ...+.+++-|-|.|.+..+.+++    ++.  .....|.-++-.+
T Consensus       211 y~edgsVkGiaT~D~GI~------k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYglGlKEv  284 (621)
T KOG2415|consen  211 YDEDGSVKGIATNDVGIS------KDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLGLKEV  284 (621)
T ss_pred             EcCCCcEeeEeecccccc------CCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceecccccee
Confidence            333445555544332210      122110     12678999999999999888776    221  1111122111111


Q ss_pred             EEecCCcccccccCCCceEEEEEc----cC--ceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHH-----HHHh
Q 012845          260 HFLSKDLGDYLLNERPGMLFFIFN----TE--AIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKL-----IFKL  328 (455)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~  328 (455)
                      ..+.+      ...+|+......+    .+  +..+++.+..+....-+.+.++-.+..+..+  +++.++     +.+.
T Consensus       285 Wei~~------~~~~pG~v~HT~GwPl~~~tYGGsFlYh~~d~~VavGlVVgLdY~NP~lsP~--~EFQk~K~hP~i~~v  356 (621)
T KOG2415|consen  285 WEIDP------ENHNPGEVAHTLGWPLDNDTYGGSFLYHFNDPLVAVGLVVGLDYKNPYLSPY--KEFQKMKHHPSISKV  356 (621)
T ss_pred             EecCh------hhcCCcceeeeccCcccCCccCceeEEEcCCCeEEEEEEEEecCCCCCCCHH--HHHHHhhcCcchhhh
Confidence            11111      1122222221110    01  1122222221111111222232223332211  112211     1111


Q ss_pred             hCCCCCCeeEEEeeceEece----eeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCc-
Q 012845          329 VGWELSDIDVIDIKPWVMHA----EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPA-  403 (455)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~-  403 (455)
                      +.    ..+.+......++.    ..+ ...  -.+=+|||=+|++|+----.|...||.++.++|+.+-+.+++.+.. 
T Consensus       357 le----Ggk~i~YgARaLNEGGfQsiP-kl~--FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~~~k  429 (621)
T KOG2415|consen  357 LE----GGKRIAYGARALNEGGFQSIP-KLV--FPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQSK  429 (621)
T ss_pred             hc----CcceeeehhhhhccCCcccCc-ccc--cCCceEeecccccccccccccchhhhhcchhHHHHHHHHHhcCcccc
Confidence            11    11111111111110    111 111  1445899999999998889999999999999999999888654322 


Q ss_pred             -hh--hhhHHHhhhHHHHHhHHhHHHHHH
Q 012845          404 -SI--LNTYETERKPIAEFNTALSVQNFR  429 (455)
Q Consensus       404 -~a--l~~Y~~~r~~~~~~~~~~s~~~~~  429 (455)
                       ..  +..|++.-+...-.--..|.++++
T Consensus       430 ~~~~~~~~Ye~nlkds~V~KeLysvRNir  458 (621)
T KOG2415|consen  430 MAGLDPTTYEENLKDSYVWKELYSVRNIR  458 (621)
T ss_pred             ccccChhhHHHhhhhhHHHHHHHHhhccC
Confidence             12  448888766655444444444443

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.40  E-value=2.9e-10  Score=113.32  Aligned_cols=61  Identities=16%  Similarity=0.223  Sum_probs=48.7

Q ss_pred             ccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEE
Q 012845          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI  230 (455)
Q Consensus       151 ~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV  230 (455)
                      .++...+...+.+.+.+.|+                   +++.+++|++++.+++.+.+.+.   +|     .+.+|.||
T Consensus       145 ~v~p~~~~~~~~~~~~~~gv-------------------~i~~~~~v~~i~~~~~~~~v~~~---~g-----~~~a~~vV  197 (376)
T PRK11259        145 FLRPELAIKAHLRLAREAGA-------------------ELLFNEPVTAIEADGDGVTVTTA---DG-----TYEAKKLV  197 (376)
T ss_pred             EEcHHHHHHHHHHHHHHCCC-------------------EEECCCEEEEEEeeCCeEEEEeC---CC-----EEEeeEEE
Confidence            45666777778888888776                   99999999999987777666554   44     67899999


Q ss_pred             eecCCCch
Q 012845          231 GTDGAGST  238 (455)
Q Consensus       231 ~AdG~~S~  238 (455)
                      .|+|.++.
T Consensus       198 ~A~G~~~~  205 (376)
T PRK11259        198 VSAGAWVK  205 (376)
T ss_pred             EecCcchh
Confidence            99999864

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.38  E-value=7.8e-12  Score=110.15  Aligned_cols=144  Identities=18%  Similarity=0.268  Sum_probs=89.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcc-------cccChhHHHHHHhhhchHHHHHhcCCCcc
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQA-------HFINNRYALVFRKLDGLAEEIERSQPPVD  113 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~-------~~l~~~~~~~l~~~~gl~~~l~~~~~~~~  113 (455)
                      ..++||+||||||+||++|+.|++.|++|.||||+..+.....+       ..+...+..+|+++ |+.         ..
T Consensus        15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~el-gi~---------y~   84 (230)
T PF01946_consen   15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDEL-GIP---------YE   84 (230)
T ss_dssp             HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHH-T------------E
T ss_pred             hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhC-Cce---------eE
Confidence            34799999999999999999999999999999999887533222       22334556666655 442         11


Q ss_pred             cccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEe
Q 012845          114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILM  193 (455)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~  193 (455)
                      ..                              ....+..+...+...|...+.+.|+                   +|+.
T Consensus        85 ~~------------------------------~~g~~v~d~~~~~s~L~s~a~~aGa-------------------kifn  115 (230)
T PF01946_consen   85 EY------------------------------GDGYYVADSVEFTSTLASKAIDAGA-------------------KIFN  115 (230)
T ss_dssp             E-------------------------------SSEEEES-HHHHHHHHHHHHHTTTE-------------------EEEE
T ss_pred             Ee------------------------------CCeEEEEcHHHHHHHHHHHHhcCCC-------------------EEEe
Confidence            00                              1123445777888888888888887                   8999


Q ss_pred             ccEEEEeeecC-CceE-EEEEecc---CC-cceeEEEEeCEEEeecCCCchhhhhc
Q 012845          194 GHECVSVSATD-QCIN-VIASFLK---EG-KCTERNIQCNILIGTDGAGSTVRKLV  243 (455)
Q Consensus       194 ~~~v~~i~~~~-~~~~-v~~~~~~---~g-~~~~~~~~~d~vV~AdG~~S~vr~~l  243 (455)
                      .+.|+++...+ +.+. +.+.+.-   .+ -=...++++++||+|+|..+.+-+.+
T Consensus       116 ~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v~~~~  171 (230)
T PF01946_consen  116 LTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEVVRVL  171 (230)
T ss_dssp             TEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSSTSHH
T ss_pred             eeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHHHHHH
Confidence            99999998776 4444 3332210   11 00124789999999999887654443

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.37  E-value=1.9e-13  Score=135.72  Aligned_cols=140  Identities=21%  Similarity=0.341  Sum_probs=77.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC----cc-cccC-----------------hhHHHHHHhhhch
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP----QA-HFIN-----------------NRYALVFRKLDGL  101 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~----~~-~~l~-----------------~~~~~~l~~~~gl  101 (455)
                      |||+||||||||++||+.|++.|.+|+||||++.+..+.    .| ..++                 ......|+++ +.
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f-~~   79 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRF-SP   79 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS--H
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcC-CH
Confidence            799999999999999999999999999999998764210    00 0000                 1122334443 22


Q ss_pred             H---HHHHhcCCCcccccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCc
Q 012845          102 A---EEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGT  178 (455)
Q Consensus       102 ~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~  178 (455)
                      .   .-+.+.+.+...        ..++...                |   ..-.-..+.+.|++.+++.|+        
T Consensus        80 ~d~~~ff~~~Gv~~~~--------~~~gr~f----------------P---~s~~a~~Vv~~L~~~l~~~gv--------  124 (409)
T PF03486_consen   80 EDLIAFFEELGVPTKI--------EEDGRVF----------------P---KSDKASSVVDALLEELKRLGV--------  124 (409)
T ss_dssp             HHHHHHHHHTT--EEE---------STTEEE----------------E---TT--HHHHHHHHHHHHHHHT---------
T ss_pred             HHHHHHHHhcCCeEEE--------cCCCEEC----------------C---CCCcHHHHHHHHHHHHHHcCC--------
Confidence            1   122222222100        0011110                1   112356899999999999997        


Q ss_pred             ccccccccccceEEeccEEEEeeecCCc-eEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          179 EGLHNHLLQGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       179 ~~~~~~~~~~~~i~~~~~v~~i~~~~~~-~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                                 +|+++++|.+++.++++ +.|.+.   ++.    .+.+|.||.|+|..|
T Consensus       125 -----------~i~~~~~V~~i~~~~~~~f~v~~~---~~~----~~~a~~vILAtGG~S  166 (409)
T PF03486_consen  125 -----------EIHFNTRVKSIEKKEDGVFGVKTK---NGG----EYEADAVILATGGKS  166 (409)
T ss_dssp             -----------EEE-S--EEEEEEETTEEEEEEET---TTE----EEEESEEEE----SS
T ss_pred             -----------EEEeCCEeeeeeecCCceeEeecc---Ccc----cccCCEEEEecCCCC
Confidence                       99999999999987777 556652   333    889999999999776

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.37  E-value=8.1e-10  Score=114.05  Aligned_cols=181  Identities=17%  Similarity=0.177  Sum_probs=101.3

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC-CCcccccChhHHHHHHhhh-chH-H------HHHhcCC
Q 012845           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST-HPQAHFINNRYALVFRKLD-GLA-E------EIERSQP  110 (455)
Q Consensus        40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~-~~~~~~l~~~~~~~l~~~~-gl~-~------~l~~~~~  110 (455)
                      |+.++||+|||||++|+++|+.|+++|++|+|+||.+.... .++...+-..+.+.+.... .+. +      .+.....
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~~ap   82 (502)
T PRK13369          3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAAAP   82 (502)
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHHhCC
Confidence            35669999999999999999999999999999999965421 1222222222233333210 111 1      1111111


Q ss_pred             CcccccceEEeecCCCC--c-----------------cc---cccCC-----Cc--cccccccCCccccccchhhHHHHH
Q 012845          111 PVDLWRKFIYCTSVTGP--I-----------------LG---SVDHM-----QP--QDFEKVVSPVSVAHFSQYKLNKLL  161 (455)
Q Consensus       111 ~~~~~~~~~~~~~~~~~--~-----------------~~---~~~~~-----~~--~~~~~~~~~~~~~~i~r~~l~~~L  161 (455)
                      .......+.+.......  .                 +.   ..+..     ..  ....... .+....++...|...+
T Consensus        83 ~l~~~~~~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~-~~~dg~vd~~rl~~~l  161 (502)
T PRK13369         83 HIIWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGF-EYSDCWVDDARLVVLN  161 (502)
T ss_pred             ccccccceEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCchHhcCEEE-EEcCeeecHHHHHHHH
Confidence            11000001111000000  0                 00   00000     00  0000000 1112346677888888


Q ss_pred             HHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch-hh
Q 012845          162 LKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST-VR  240 (455)
Q Consensus       162 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~-vr  240 (455)
                      ...+.+.|+                   .++.+++|+++..+++.+.+.+.   ++.+.+.++.+++||.|+|.++. +.
T Consensus       162 ~~~a~~~Ga-------------------~i~~~~~V~~i~~~~~~~~v~~~---~~~g~~~~i~a~~VVnAaG~wa~~l~  219 (502)
T PRK13369        162 ALDAAERGA-------------------TILTRTRCVSARREGGLWRVETR---DADGETRTVRARALVNAAGPWVTDVI  219 (502)
T ss_pred             HHHHHHCCC-------------------EEecCcEEEEEEEcCCEEEEEEE---eCCCCEEEEEecEEEECCCccHHHHH
Confidence            888888887                   99999999999887776667665   33333457899999999999986 54


Q ss_pred             hhc
Q 012845          241 KLV  243 (455)
Q Consensus       241 ~~l  243 (455)
                      +.+
T Consensus       220 ~~~  222 (502)
T PRK13369        220 HRV  222 (502)
T ss_pred             hhc
Confidence            433

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.36  E-value=7.7e-11  Score=116.09  Aligned_cols=173  Identities=20%  Similarity=0.270  Sum_probs=98.7

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC---CCcccccCh-------hHHHHH-HhhhchHHHHHh-cCCCc
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST---HPQAHFINN-------RYALVF-RKLDGLAEEIER-SQPPV  112 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~---~~~~~~l~~-------~~~~~l-~~~~gl~~~l~~-~~~~~  112 (455)
                      ||+|||||++|+++|+.|++.|++|+|+|+......   ...+.....       ...++. ..+ ..+..+.. .+.+.
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~   79 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGDIGSGASGRSGGLVRPGISSYPDPQYARLARESV-EFWRELAEEYGIPV   79 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEEEESSSTTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHH-HHHHHHHHHTTSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeeccccccccccccccccccccccccccccchhhhhc-cchhhhhhhcCccc
Confidence            799999999999999999999999999999944321   112222111       111111 111 33444422 22222


Q ss_pred             cc--ccceEEeecCCCCc-c-------ccccC----CCcccccc----cc-------CCccccccchhhHHHHHHHHHHh
Q 012845          113 DL--WRKFIYCTSVTGPI-L-------GSVDH----MQPQDFEK----VV-------SPVSVAHFSQYKLNKLLLKQLEK  167 (455)
Q Consensus       113 ~~--~~~~~~~~~~~~~~-~-------~~~~~----~~~~~~~~----~~-------~~~~~~~i~r~~l~~~L~~~~~~  167 (455)
                      ..  ...+.+..+..... +       .....    ........    ..       .......++-..+.+.|.+.+++
T Consensus        80 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~~~~  159 (358)
T PF01266_consen   80 GFRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAEAQR  159 (358)
T ss_dssp             EEEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHHHHH
T ss_pred             ccccccccccccchhhhhhccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHHHHH
Confidence            11  01111110100000 0       00000    00000000    00       01224456778999999999999


Q ss_pred             cccccccCCCcccccccccccceEEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCEEEeecCCCchh-hhhcCC
Q 012845          168 LNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTV-RKLVGI  245 (455)
Q Consensus       168 ~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v-r~~l~~  245 (455)
                      .|+                   +|+.+++|++++.+++.+. |.+.   +|     .+.+|.||.|.|.++.. .+.++.
T Consensus       160 ~Gv-------------------~i~~~~~V~~i~~~~~~v~gv~~~---~g-----~i~ad~vV~a~G~~s~~l~~~~~~  212 (358)
T PF01266_consen  160 AGV-------------------EIRTGTEVTSIDVDGGRVTGVRTS---DG-----EIRADRVVLAAGAWSPQLLPLLGL  212 (358)
T ss_dssp             TT--------------------EEEESEEEEEEEEETTEEEEEEET---TE-----EEEECEEEE--GGGHHHHHHTTTT
T ss_pred             hhh-------------------hccccccccchhhccccccccccc---cc-----ccccceeEecccccceeeeecccc
Confidence            987                   9999999999999999887 7765   65     58999999999998863 445544

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.34  E-value=2.8e-10  Score=114.68  Aligned_cols=37  Identities=41%  Similarity=0.547  Sum_probs=33.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC-CC-CEEEEcCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKL-GI-KCSVLEKNKA   77 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~-g~-~V~l~Er~~~   77 (455)
                      ...+||+|||||++|+++|+.|+++ |. +|+|+||...
T Consensus        28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~   66 (407)
T TIGR01373        28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWL   66 (407)
T ss_pred             CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccc
Confidence            4578999999999999999999995 96 8999999853

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.30  E-value=7.4e-10  Score=111.71  Aligned_cols=71  Identities=15%  Similarity=0.233  Sum_probs=51.8

Q ss_pred             cchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcc-eeEEEEeCEEE
Q 012845          152 FSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKC-TERNIQCNILI  230 (455)
Q Consensus       152 i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~-~~~~~~~d~vV  230 (455)
                      ++-..+...|.+.+.+.|+                   +++.+++|++++..++.+.+.+.   ++.+ ....+++|.||
T Consensus       194 ~~~~~~~~~l~~~a~~~G~-------------------~i~~~~~V~~i~~~~~~~~v~~~---~~~~~~~~~i~a~~vV  251 (410)
T PRK12409        194 GDIHKFTTGLAAACARLGV-------------------QFRYGQEVTSIKTDGGGVVLTVQ---PSAEHPSRTLEFDGVV  251 (410)
T ss_pred             cCHHHHHHHHHHHHHhCCC-------------------EEEcCCEEEEEEEeCCEEEEEEE---cCCCCccceEecCEEE
Confidence            4445777888888888887                   99999999999887776666554   2210 01267999999


Q ss_pred             eecCCCch-hhhhcC
Q 012845          231 GTDGAGST-VRKLVG  244 (455)
Q Consensus       231 ~AdG~~S~-vr~~l~  244 (455)
                      .|+|.+|. +.+.++
T Consensus       252 ~a~G~~s~~l~~~~~  266 (410)
T PRK12409        252 VCAGVGSRALAAMLG  266 (410)
T ss_pred             ECCCcChHHHHHHhC
Confidence            99999985 445454

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.29  E-value=7.8e-11  Score=119.55  Aligned_cols=155  Identities=17%  Similarity=0.178  Sum_probs=92.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhc-----------hHHHHHhcC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDG-----------LAEEIERSQ  109 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~g-----------l~~~l~~~~  109 (455)
                      ....+|+|||||+|||++|..|.+.|++|+||||++..+   +.+..++..-.  +.+ +           +++.+....
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vG---G~W~~~~~~~~--d~~-~~~~~~~~~~s~~Y~~L~tn~   81 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVG---GLWVYTPKSES--DPL-SLDPTRSIVHSSVYESLRTNL   81 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCc---ceeecCCCcCC--Ccc-ccCCCCcccchhhhhhhhccC
Confidence            456899999999999999999999999999999998762   22222221100  000 1           111111110


Q ss_pred             CCcccccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccc
Q 012845          110 PPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGR  189 (455)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~  189 (455)
                      .               .......+........... .......+..++.++|.+.++..|+.                 .
T Consensus        82 p---------------~~~m~f~dfp~~~~~~~~~-~~~~~fp~~~ev~~YL~~~a~~fgl~-----------------~  128 (461)
T PLN02172         82 P---------------RECMGYRDFPFVPRFDDES-RDSRRYPSHREVLAYLQDFAREFKIE-----------------E  128 (461)
T ss_pred             C---------------HhhccCCCCCCCccccccc-CcCCCCCCHHHHHHHHHHHHHHcCCc-----------------c
Confidence            0               0000000000000000000 00011235678999999999998862                 2


Q ss_pred             eEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          190 EILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       190 ~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                      .|+++++|++++..++.+.|++.   ++.+...+..+|.||.|+|..+
T Consensus       129 ~I~~~t~V~~V~~~~~~w~V~~~---~~~~~~~~~~~d~VIvAtG~~~  173 (461)
T PLN02172        129 MVRFETEVVRVEPVDGKWRVQSK---NSGGFSKDEIFDAVVVCNGHYT  173 (461)
T ss_pred             eEEecCEEEEEeecCCeEEEEEE---cCCCceEEEEcCEEEEeccCCC
Confidence            48999999999988788888776   3322223567999999999865

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.29  E-value=5e-10  Score=113.19  Aligned_cols=68  Identities=18%  Similarity=0.144  Sum_probs=50.7

Q ss_pred             ccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCEE
Q 012845          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNIL  229 (455)
Q Consensus       151 ~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~v  229 (455)
                      .++-..+...|.+.+.+.|+                   +|+.+++|++++.+++.+. +.+.   ++     ++.+|.|
T Consensus       197 ~~~p~~~~~~l~~~~~~~G~-------------------~i~~~~~V~~i~~~~~~~~~v~t~---~~-----~~~a~~V  249 (416)
T PRK00711        197 TGDCQLFTQRLAAMAEQLGV-------------------KFRFNTPVDGLLVEGGRITGVQTG---GG-----VITADAY  249 (416)
T ss_pred             cCCHHHHHHHHHHHHHHCCC-------------------EEEcCCEEEEEEecCCEEEEEEeC---Cc-----EEeCCEE
Confidence            45556788888888888886                   9999999999988777654 3332   33     6789999


Q ss_pred             EeecCCCch-hhhhcCC
Q 012845          230 IGTDGAGST-VRKLVGI  245 (455)
Q Consensus       230 V~AdG~~S~-vr~~l~~  245 (455)
                      |.|+|.++. +.+.++.
T Consensus       250 V~a~G~~~~~l~~~~g~  266 (416)
T PRK00711        250 VVALGSYSTALLKPLGV  266 (416)
T ss_pred             EECCCcchHHHHHHhCC
Confidence            999999985 3344443

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.29  E-value=6.8e-09  Score=107.23  Aligned_cols=71  Identities=17%  Similarity=0.133  Sum_probs=52.9

Q ss_pred             ccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEE
Q 012845          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI  230 (455)
Q Consensus       151 ~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV  230 (455)
                      .++...|...+.+.+.+.|+                   +++.+++|+++..+++.+.+++....+|+  ..++.+|.||
T Consensus       151 ~vd~~rl~~~l~~~A~~~Ga-------------------~i~~~~~V~~i~~~~~~~~v~~~~~~~g~--~~~i~a~~VV  209 (508)
T PRK12266        151 WVDDARLVVLNARDAAERGA-------------------EILTRTRVVSARRENGLWHVTLEDTATGK--RYTVRARALV  209 (508)
T ss_pred             ccCHHHHHHHHHHHHHHcCC-------------------EEEcCcEEEEEEEeCCEEEEEEEEcCCCC--EEEEEcCEEE
Confidence            45667777788888888887                   99999999999887776666665222232  3478999999


Q ss_pred             eecCCCch-hhhh
Q 012845          231 GTDGAGST-VRKL  242 (455)
Q Consensus       231 ~AdG~~S~-vr~~  242 (455)
                      .|+|.++. +.+.
T Consensus       210 nAaG~wa~~l~~~  222 (508)
T PRK12266        210 NAAGPWVKQFLDD  222 (508)
T ss_pred             ECCCccHHHHHhh
Confidence            99999985 4443

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.28  E-value=3.5e-11  Score=105.33  Aligned_cols=143  Identities=18%  Similarity=0.281  Sum_probs=95.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC--ccc-----ccChhHHHHHHhhhchHHHHHhcCCCccc
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP--QAH-----FINNRYALVFRKLDGLAEEIERSQPPVDL  114 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~--~~~-----~l~~~~~~~l~~~~gl~~~l~~~~~~~~~  114 (455)
                      ...||+||||||+||++|+.|+++|.+|+||||+-.+....  .|.     .+...+.++|+++ |+.         ...
T Consensus        29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~-gI~---------ye~   98 (262)
T COG1635          29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEF-GIR---------YEE   98 (262)
T ss_pred             hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHh-CCc---------cee
Confidence            35799999999999999999999999999999998773221  111     1223444444444 331         110


Q ss_pred             ccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEec
Q 012845          115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG  194 (455)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~  194 (455)
                      .                              ..+.+..+-..+...|..++.+.|+                   +|+.+
T Consensus        99 ~------------------------------e~g~~v~ds~e~~skl~~~a~~aGa-------------------ki~n~  129 (262)
T COG1635          99 E------------------------------EDGYYVADSAEFASKLAARALDAGA-------------------KIFNG  129 (262)
T ss_pred             c------------------------------CCceEEecHHHHHHHHHHHHHhcCc-------------------eeeec
Confidence            0                              1113344666788888888888887                   88899


Q ss_pred             cEEEEeeecCC-ceE-EEEEecc---CCcc-eeEEEEeCEEEeecCCCchhhhhc
Q 012845          195 HECVSVSATDQ-CIN-VIASFLK---EGKC-TERNIQCNILIGTDGAGSTVRKLV  243 (455)
Q Consensus       195 ~~v~~i~~~~~-~~~-v~~~~~~---~g~~-~~~~~~~d~vV~AdG~~S~vr~~l  243 (455)
                      +.|+++...++ ++. +.+++.-   .+.. ...++++++||+|+|....+-+.+
T Consensus       130 ~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~  184 (262)
T COG1635         130 VSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFL  184 (262)
T ss_pred             ceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHH
Confidence            99999887766 343 2222110   1100 123789999999999887776655

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.25  E-value=7.7e-10  Score=118.11  Aligned_cols=62  Identities=16%  Similarity=0.264  Sum_probs=50.1

Q ss_pred             cccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEE
Q 012845          150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNIL  229 (455)
Q Consensus       150 ~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~v  229 (455)
                      ..++...+.+.|.+.+.+ |+                   +++++++|++++..++.+.|.+.   ++.    .+.+|.|
T Consensus       403 G~v~p~~l~~aL~~~a~~-Gv-------------------~i~~~~~V~~i~~~~~~~~v~t~---~g~----~~~ad~V  455 (662)
T PRK01747        403 GWLCPAELCRALLALAGQ-QL-------------------TIHFGHEVARLEREDDGWQLDFA---GGT----LASAPVV  455 (662)
T ss_pred             CeeCHHHHHHHHHHhccc-Cc-------------------EEEeCCEeeEEEEeCCEEEEEEC---CCc----EEECCEE
Confidence            446677888889888888 76                   99999999999887777776554   553    5689999


Q ss_pred             EeecCCCch
Q 012845          230 IGTDGAGST  238 (455)
Q Consensus       230 V~AdG~~S~  238 (455)
                      |.|+|.++.
T Consensus       456 V~A~G~~s~  464 (662)
T PRK01747        456 VLANGHDAA  464 (662)
T ss_pred             EECCCCCcc
Confidence            999999985

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.25  E-value=5.7e-11  Score=107.63  Aligned_cols=135  Identities=23%  Similarity=0.281  Sum_probs=78.3

Q ss_pred             EEECCCHHHHHHHHHHHhCCCC-EEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhc---CCCcccccceEEee
Q 012845           47 LIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERS---QPPVDLWRKFIYCT  122 (455)
Q Consensus        47 vIVGgG~aGl~~A~~La~~g~~-V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~---~~~~~~~~~~~~~~  122 (455)
                      +||||||+||++|..|.++|++ |+||||++.+.                    |.|......   ..+......     
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~G--------------------g~w~~~~~~~~~~~~~~~~~~-----   55 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPG--------------------GVWRRYYSYTRLHSPSFFSSD-----   55 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSST--------------------THHHCH-TTTT-BSSSCCTGG-----
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCC--------------------CeeEEeCCCCccccCcccccc-----
Confidence            6999999999999999999999 99999997762                    111100000   000000000     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                        .+  +..+...........  .......++.++.++|.+.+++.+.                   .++++++|+++..
T Consensus        56 --~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~yl~~~~~~~~l-------------------~i~~~~~V~~v~~  110 (203)
T PF13738_consen   56 --FG--LPDFESFSFDDSPEW--RWPHDFPSGEEVLDYLQEYAERFGL-------------------EIRFNTRVESVRR  110 (203)
T ss_dssp             --SS----CCCHSCHHHHHHH--HHSBSSEBHHHHHHHHHHHHHHTTG-------------------GEETS--EEEEEE
T ss_pred             --cc--CCcccccccccCCCC--CCCcccCCHHHHHHHHHHHHhhcCc-------------------ccccCCEEEEEEE
Confidence              00  000000000000000  0012236788899999999999887                   7999999999999


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      +++++.|++.   ++.    ++.+|.||.|+|..|.
T Consensus       111 ~~~~w~v~~~---~~~----~~~a~~VVlAtG~~~~  139 (203)
T PF13738_consen  111 DGDGWTVTTR---DGR----TIRADRVVLATGHYSH  139 (203)
T ss_dssp             ETTTEEEEET---TS-----EEEEEEEEE---SSCS
T ss_pred             eccEEEEEEE---ecc----eeeeeeEEEeeeccCC
Confidence            9988988887   663    7889999999998664

...

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=99.23  E-value=2e-10  Score=117.84  Aligned_cols=150  Identities=15%  Similarity=0.189  Sum_probs=89.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC-CCCCCCcccccC---h-hHHHHHHhhhchHHHHHh-cCCCccc
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK-AFSTHPQAHFIN---N-RYALVFRKLDGLAEEIER-SQPPVDL  114 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~-~~~~~~~~~~l~---~-~~~~~l~~~~gl~~~l~~-~~~~~~~  114 (455)
                      +.++||+|||||+||+.+|+.+++.|.+|.|+|++. .+..-.|.-.+.   . ...+-++.+.|+...+.+ .+..   
T Consensus         2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq---   78 (618)
T PRK05192          2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQ---   78 (618)
T ss_pred             CccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCc---
Confidence            456999999999999999999999999999999874 222112211111   1 112222333222222211 1110   


Q ss_pred             ccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEec
Q 012845          115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG  194 (455)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~  194 (455)
                         +.......|..+              ..+  ...+++..+.+.|.+.+.+.+.                  ..+ +.
T Consensus        79 ---~r~ln~skGpAV--------------~s~--RaQiDr~ly~kaL~e~L~~~~n------------------V~I-~q  120 (618)
T PRK05192         79 ---FRMLNTSKGPAV--------------RAL--RAQADRKLYRAAMREILENQPN------------------LDL-FQ  120 (618)
T ss_pred             ---eeecccCCCCce--------------eCc--HHhcCHHHHHHHHHHHHHcCCC------------------cEE-EE
Confidence               000000011000              001  2367888899999998887632                  265 56


Q ss_pred             cEEEEeeecCCceE-EEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          195 HECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       195 ~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      ..|+++..+++.+. |.+.   +|.    .+.|+.||+|+|.++.
T Consensus       121 ~~V~~Li~e~grV~GV~t~---dG~----~I~Ak~VIlATGTFL~  158 (618)
T PRK05192        121 GEVEDLIVENGRVVGVVTQ---DGL----EFRAKAVVLTTGTFLR  158 (618)
T ss_pred             eEEEEEEecCCEEEEEEEC---CCC----EEECCEEEEeeCcchh
Confidence            77888877666655 4444   554    7899999999998763

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.23  E-value=2.4e-10  Score=114.50  Aligned_cols=70  Identities=17%  Similarity=0.284  Sum_probs=56.2

Q ss_pred             cccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEE
Q 012845          150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNIL  229 (455)
Q Consensus       150 ~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~v  229 (455)
                      ..++...+.+.|.+.+.+.|+                   +++++++|++++..++.+.|.+.   ++     ++.+|.|
T Consensus       144 g~vd~~~l~~aL~~~~~~~Gv-------------------~i~~~~~V~~i~~~~~~~~V~~~---~g-----~i~ad~v  196 (393)
T PRK11728        144 GIVDYRAVAEAMAELIQARGG-------------------EIRLGAEVTALDEHANGVVVRTT---QG-----EYEARTL  196 (393)
T ss_pred             eEECHHHHHHHHHHHHHhCCC-------------------EEEcCCEEEEEEecCCeEEEEEC---CC-----EEEeCEE
Confidence            456778899999999999886                   89999999999887776655543   44     6899999


Q ss_pred             EeecCCCch-hhhhcCCC
Q 012845          230 IGTDGAGST-VRKLVGID  246 (455)
Q Consensus       230 V~AdG~~S~-vr~~l~~~  246 (455)
                      |.|+|.+|. +.+.++..
T Consensus       197 V~A~G~~s~~l~~~~g~~  214 (393)
T PRK11728        197 INCAGLMSDRLAKMAGLE  214 (393)
T ss_pred             EECCCcchHHHHHHhCCC
Confidence            999999985 66666643

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.20  E-value=4.2e-10  Score=111.03  Aligned_cols=179  Identities=15%  Similarity=0.212  Sum_probs=101.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCCCCCC---------cccccChhHHHH-HHhhhch--HHHH-H
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFSTHP---------QAHFINNRYALV-FRKLDGL--AEEI-E  106 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g--~~V~l~Er~~~~~~~~---------~~~~l~~~~~~~-l~~~~gl--~~~l-~  106 (455)
                      +.+||+|||||+.|+++|+.|++++  ++|+|+||.+.+....         .|.-.++....+ +... |-  +.++ .
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~-g~~~~~~~~k   80 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVA-GNINEFAICK   80 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHH-HHHHHHHHHH
Confidence            5789999999999999999999998  9999999998763211         111112221100 0000 00  0111 1


Q ss_pred             hcCCCcccccceEEeec------------------------CCCCcccccc-CCCccccccccCCccccccchhhHHHHH
Q 012845          107 RSQPPVDLWRKFIYCTS------------------------VTGPILGSVD-HMQPQDFEKVVSPVSVAHFSQYKLNKLL  161 (455)
Q Consensus       107 ~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~r~~l~~~L  161 (455)
                      +...+........+.++                        .+...+..+. ............+ ....++-..+...|
T Consensus        81 q~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p-~~giV~~~~~t~~l  159 (429)
T COG0579          81 QLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVP-SGGIVDPGELTRAL  159 (429)
T ss_pred             HhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcC-CCceEcHHHHHHHH
Confidence            11111111111111111                        0111111111 1110011111111 23446667788889


Q ss_pred             HHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCc-eEEEEEeccCCcceeEEEEeCEEEeecCCCch-h
Q 012845          162 LKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGST-V  239 (455)
Q Consensus       162 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~-~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~-v  239 (455)
                      .+.+.+.|+                   +++++++|++++..+++ ..+.+.   +|+.   +++|++||.|.|..|. +
T Consensus       160 ~e~a~~~g~-------------------~i~ln~eV~~i~~~~dg~~~~~~~---~g~~---~~~ak~Vin~AGl~Ad~l  214 (429)
T COG0579         160 AEEAQANGV-------------------ELRLNTEVTGIEKQSDGVFVLNTS---NGEE---TLEAKFVINAAGLYADPL  214 (429)
T ss_pred             HHHHHHcCC-------------------EEEecCeeeEEEEeCCceEEEEec---CCcE---EEEeeEEEECCchhHHHH
Confidence            999999887                   99999999999998885 334444   5541   2899999999999886 6


Q ss_pred             hhhcCCCc
Q 012845          240 RKLVGIDL  247 (455)
Q Consensus       240 r~~l~~~~  247 (455)
                      .+..|.+.
T Consensus       215 a~~~g~~~  222 (429)
T COG0579         215 AQMAGIPE  222 (429)
T ss_pred             HHHhCCCc
Confidence            66666554

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.19  E-value=2.9e-10  Score=115.98  Aligned_cols=71  Identities=15%  Similarity=0.240  Sum_probs=54.7

Q ss_pred             cccchhhHHHHHHHHHHh----cccccccCCCcccccccccccceEEeccEEEEeeec-CCceEEEEEeccCCcceeEEE
Q 012845          150 AHFSQYKLNKLLLKQLEK----LNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT-DQCINVIASFLKEGKCTERNI  224 (455)
Q Consensus       150 ~~i~r~~l~~~L~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~-~~~~~v~~~~~~~g~~~~~~~  224 (455)
                      ..++...|.+.|.+.+.+    .|..                 ++|+++++|++++.. ++.+.|.+.   +|     ++
T Consensus       206 ~~Vd~~~L~~al~~~a~~~~~~~G~~-----------------v~i~~~t~V~~I~~~~~~~~~V~T~---~G-----~i  260 (497)
T PTZ00383        206 TTVDYQKLSESFVKHARRDALVPGKK-----------------ISINLNTEVLNIERSNDSLYKIHTN---RG-----EI  260 (497)
T ss_pred             EEECHHHHHHHHHHHHHhhhhhcCCC-----------------EEEEeCCEEEEEEecCCCeEEEEEC---CC-----EE
Confidence            456778899999999988    7731                 289999999999987 444556554   55     68


Q ss_pred             EeCEEEeecCCCch-hhhhcCC
Q 012845          225 QCNILIGTDGAGST-VRKLVGI  245 (455)
Q Consensus       225 ~~d~vV~AdG~~S~-vr~~l~~  245 (455)
                      .+|.||.|.|.+|. +.+.+|.
T Consensus       261 ~A~~VVvaAG~~S~~La~~~Gi  282 (497)
T PTZ00383        261 RARFVVVSACGYSLLFAQKMGY  282 (497)
T ss_pred             EeCEEEECcChhHHHHHHHhCC
Confidence            99999999999996 6666664

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.19  E-value=3.1e-09  Score=108.68  Aligned_cols=61  Identities=16%  Similarity=0.075  Sum_probs=48.9

Q ss_pred             cccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEE
Q 012845          150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNIL  229 (455)
Q Consensus       150 ~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~v  229 (455)
                      .+++-.++.+.|.+.+.+.|+                   +|+.++.|++++. ++.+.|.+.   +|     ++.+|.|
T Consensus       178 g~i~P~~l~~~L~~~a~~~Gv-------------------~i~~~t~V~~i~~-~~~~~v~t~---~g-----~v~A~~V  229 (460)
T TIGR03329       178 ASVQPGLLVRGLRRVALELGV-------------------EIHENTPMTGLEE-GQPAVVRTP---DG-----QVTADKV  229 (460)
T ss_pred             eEECHHHHHHHHHHHHHHcCC-------------------EEECCCeEEEEee-CCceEEEeC---Cc-----EEECCEE
Confidence            456778899999999999887                   9999999999975 444555543   45     6799999


Q ss_pred             EeecCCCch
Q 012845          230 IGTDGAGST  238 (455)
Q Consensus       230 V~AdG~~S~  238 (455)
                      |.|+|.++.
T Consensus       230 V~Atga~s~  238 (460)
T TIGR03329       230 VLALNAWMA  238 (460)
T ss_pred             EEccccccc
Confidence            999999864

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.17  E-value=2e-10  Score=114.67  Aligned_cols=149  Identities=17%  Similarity=0.203  Sum_probs=95.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      ++..+|+|||||||||++|..|.++|++|+++||.+.+.   .-+...+..-....   .+.+.+.....+.        
T Consensus         4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iG---GlW~y~~~~~~~~s---s~Y~~l~tn~pKe--------   69 (448)
T KOG1399|consen    4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIG---GLWKYTENVEVVHS---SVYKSLRTNLPKE--------   69 (448)
T ss_pred             CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCcc---ceEeecCccccccc---chhhhhhccCChh--------
Confidence            457899999999999999999999999999999998763   11111111100000   1122222211110        


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                             .-...+......       ......++.++.++|.+.+.+.+..                 ..|.++++|+.+
T Consensus        70 -------~~~~~dfpf~~~-------~~~~~p~~~e~~~YL~~yA~~F~l~-----------------~~i~f~~~v~~v  118 (448)
T KOG1399|consen   70 -------MMGYSDFPFPER-------DPRYFPSHREVLEYLRDYAKHFDLL-----------------KMINFNTEVVRV  118 (448)
T ss_pred             -------hhcCCCCCCccc-------CcccCCCHHHHHHHHHHHHHhcChh-----------------hheEecccEEEE
Confidence                   000000000000       0123346779999999999998863                 389999999999


Q ss_pred             eecC-CceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          201 SATD-QCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       201 ~~~~-~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                      +..+ +.|.|...   ++.+......+|.||.|+|-+.
T Consensus       119 ~~~~~gkW~V~~~---~~~~~~~~~ifd~VvVctGh~~  153 (448)
T KOG1399|consen  119 DSIDKGKWRVTTK---DNGTQIEEEIFDAVVVCTGHYV  153 (448)
T ss_pred             eeccCCceeEEEe---cCCcceeEEEeeEEEEcccCcC
Confidence            9887 68988887   4432234678999999999884

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=99.15  E-value=3.1e-11  Score=121.97  Aligned_cols=152  Identities=21%  Similarity=0.331  Sum_probs=38.4

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCccccc---Ch-hHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFI---NN-RYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l---~~-~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      |||||||||+|+++|+.+++.|.+|+|+||.+.+........+   .. ....  ....|+..++.+........     
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~--~~~~gi~~e~~~~~~~~~~~-----   73 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDED--QVIGGIFREFLNRLRARGGY-----   73 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHH--HHHHHHHHHHHHST-----------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhh--ccCCCHHHHHHHHHhhhccc-----
Confidence            8999999999999999999999999999999877432222111   11 1111  11136666665532211000     


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                             ..   +    ...    .......+++..+...|.+.+.+.|+                   +|++++.|+++
T Consensus        74 -------~~---~----~~~----~~~~~~~~~~~~~~~~l~~~l~e~gv-------------------~v~~~t~v~~v  116 (428)
T PF12831_consen   74 -------PQ---E----DRY----GWVSNVPFDPEVFKAVLDEMLAEAGV-------------------EVLLGTRVVDV  116 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -------cc---c----ccc----cccccccccccccccccccccccccc-------------------ccccccccccc
Confidence                   00   0    000    00001345666777777777777776                   99999999999


Q ss_pred             eecCCceE-EEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCC
Q 012845          201 SATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGI  245 (455)
Q Consensus       201 ~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~  245 (455)
                      ..+++.+. |.+... +|   ..++.+|++|+|+|. ..+....|.
T Consensus       117 ~~~~~~i~~V~~~~~-~g---~~~i~A~~~IDaTG~-g~l~~~aG~  157 (428)
T PF12831_consen  117 IRDGGRITGVIVETK-SG---RKEIRAKVFIDATGD-GDLAALAGA  157 (428)
T ss_dssp             ----------------------------------------------
T ss_pred             ccccccccccccccc-cc---ccccccccccccccc-ccccccccc
Confidence            98876654 544421 23   348999999999994 455555543

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=99.14  E-value=8.8e-09  Score=95.91  Aligned_cols=167  Identities=19%  Similarity=0.145  Sum_probs=99.3

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChh-------------HHHHHHhhhchHHHHH
Q 012845           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNR-------------YALVFRKLDGLAEEIE  106 (455)
Q Consensus        40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~-------------~~~~l~~~~gl~~~l~  106 (455)
                      |.+..||+|||||+-|+++|+.|+++|.+++++|+-+.+..++...+.+.-             ..++++.|    -.+.
T Consensus         4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W----~~~~   79 (399)
T KOG2820|consen    4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKW----RNLP   79 (399)
T ss_pred             cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHH----HhCh
Confidence            356799999999999999999999999999999999988766655544411             11111111    1111


Q ss_pred             h-cCCCcccccceEEeecCC-----------------------CCccccccC--CCccccccccCCccccccchhhHHHH
Q 012845          107 R-SQPPVDLWRKFIYCTSVT-----------------------GPILGSVDH--MQPQDFEKVVSPVSVAHFSQYKLNKL  160 (455)
Q Consensus       107 ~-~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~--~~~~~~~~~~~~~~~~~i~r~~l~~~  160 (455)
                      . .+.....-..+.......                       .+.-..++.  .-+.+... ........+.-.+-.+.
T Consensus        80 ~~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G-~~n~~gGvi~a~kslk~  158 (399)
T KOG2820|consen   80 EESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQG-VVNESGGVINAAKSLKA  158 (399)
T ss_pred             hhhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhh-cccccccEeeHHHHHHH
Confidence            1 011000000000000000                       000000110  00000000 01223455677788889


Q ss_pred             HHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee---cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          161 LLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA---TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       161 L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~---~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                      |...+++.|+                   .++.+.+|+.+..   .+..+.|+++   +|+    .+.++-+|.+.|++-
T Consensus       159 ~~~~~~~~G~-------------------i~~dg~~v~~~~~~~e~~~~v~V~Tt---~gs----~Y~akkiI~t~GaWi  212 (399)
T KOG2820|consen  159 LQDKARELGV-------------------IFRDGEKVKFIKFVDEEGNHVSVQTT---DGS----IYHAKKIIFTVGAWI  212 (399)
T ss_pred             HHHHHHHcCe-------------------EEecCcceeeEeeccCCCceeEEEec---cCC----eeecceEEEEecHHH
Confidence            9999999997                   9999999999873   3445667777   775    689999999999874

>TIGR00275 flavoprotein, HI0933 family

Probab=99.11  E-value=1.8e-10  Score=115.38  Aligned_cols=159  Identities=23%  Similarity=0.306  Sum_probs=88.3

Q ss_pred             EEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC----cc-cccCh-h-HHHHHHhhhc---h-HHHHHhcCCCcccc
Q 012845           47 LIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP----QA-HFINN-R-YALVFRKLDG---L-AEEIERSQPPVDLW  115 (455)
Q Consensus        47 vIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~----~~-~~l~~-~-~~~~l~~~~g---l-~~~l~~~~~~~~~~  115 (455)
                      +|||||+||+++|+.|+++|.+|+|+||++.+..+.    .+ ..++. . .......++.   + ...+...... ...
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~-d~~   79 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNK-DLI   79 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHH-HHH
Confidence            699999999999999999999999999998764321    01 01111 0 0111111100   0 0011110000 000


Q ss_pred             cceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEecc
Q 012845          116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH  195 (455)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~  195 (455)
                      ..+    ...|..+...      ...... +   ..-....+.+.|.+.+++.|+                   ++++++
T Consensus        80 ~~~----~~~Gv~~~~~------~~g~~~-p---~~~~a~~v~~~L~~~l~~~gv-------------------~i~~~~  126 (400)
T TIGR00275        80 DFF----ESLGLELKVE------EDGRVF-P---CSDSAADVLDALLNELKELGV-------------------EILTNS  126 (400)
T ss_pred             HHH----HHcCCeeEEe------cCCEeE-C---CCCCHHHHHHHHHHHHHHCCC-------------------EEEeCC
Confidence            000    0001100000      000000 0   111346788889999988886                   999999


Q ss_pred             EEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc-----------hhhhhcCCCc
Q 012845          196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS-----------TVRKLVGIDL  247 (455)
Q Consensus       196 ~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S-----------~vr~~l~~~~  247 (455)
                      +|+++..+++.+.+.+    ++.    ++.+|.||.|+|.+|           .+.+++|...
T Consensus       127 ~V~~i~~~~~~~~v~~----~~~----~i~ad~VIlAtG~~s~p~~gs~G~g~~la~~lG~~i  181 (400)
T TIGR00275       127 KVKSIKKDDNGFGVET----SGG----EYEADKVILATGGLSYPQLGSTGDGYEIAESLGHTI  181 (400)
T ss_pred             EEEEEEecCCeEEEEE----CCc----EEEcCEEEECCCCcccCCCCCCcHHHHHHHHCCCCE
Confidence            9999987666555543    232    678999999999987           4556666543

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.11  E-value=2.3e-08  Score=105.55  Aligned_cols=74  Identities=20%  Similarity=0.193  Sum_probs=54.4

Q ss_pred             cccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecC--CceE-EEEEeccCCcceeEEEEe
Q 012845          150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD--QCIN-VIASFLKEGKCTERNIQC  226 (455)
Q Consensus       150 ~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~--~~~~-v~~~~~~~g~~~~~~~~~  226 (455)
                      .+++-..|...|.+.+.+.|+                   +++.+++|+++..++  +.+. |.+....++.  ..++.+
T Consensus       227 g~vdp~rl~~al~~~A~~~Ga-------------------~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~--~~~i~a  285 (627)
T PLN02464        227 GQMNDSRLNVALACTAALAGA-------------------AVLNYAEVVSLIKDESTGRIVGARVRDNLTGK--EFDVYA  285 (627)
T ss_pred             cEEcHHHHHHHHHHHHHhCCc-------------------EEEeccEEEEEEEecCCCcEEEEEEEECCCCc--EEEEEe
Confidence            456778899999999999987                   999999999998753  4433 4443111222  236899


Q ss_pred             CEEEeecCCCch-hhhhcC
Q 012845          227 NILIGTDGAGST-VRKLVG  244 (455)
Q Consensus       227 d~vV~AdG~~S~-vr~~l~  244 (455)
                      |.||.|+|.+|. +++.++
T Consensus       286 ~~VVnAaGaws~~l~~~~g  304 (627)
T PLN02464        286 KVVVNAAGPFCDEVRKMAD  304 (627)
T ss_pred             CEEEECCCHhHHHHHHhcc
Confidence            999999999986 666664

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.09  E-value=3.1e-09  Score=110.64  Aligned_cols=75  Identities=12%  Similarity=0.216  Sum_probs=55.3

Q ss_pred             cccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCE
Q 012845          150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNI  228 (455)
Q Consensus       150 ~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~  228 (455)
                      ..++...|...+...+.+.|+                   +++.+++|+++..+++.+. |.+....+++  ..++.+|.
T Consensus       144 g~vdp~rl~~al~~~A~~~Ga-------------------~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~--~~~i~A~~  202 (546)
T PRK11101        144 GTVDPFRLTAANMLDAKEHGA-------------------QILTYHEVTGLIREGDTVCGVRVRDHLTGE--TQEIHAPV  202 (546)
T ss_pred             cEECHHHHHHHHHHHHHhCCC-------------------EEEeccEEEEEEEcCCeEEEEEEEEcCCCc--EEEEECCE
Confidence            457778888888888889887                   9999999999988766544 4444111222  23789999


Q ss_pred             EEeecCCCch-hhhhcCC
Q 012845          229 LIGTDGAGST-VRKLVGI  245 (455)
Q Consensus       229 vV~AdG~~S~-vr~~l~~  245 (455)
                      ||.|.|.++. +.+..+.
T Consensus       203 VVnAaG~wa~~l~~~~g~  220 (546)
T PRK11101        203 VVNAAGIWGQHIAEYADL  220 (546)
T ss_pred             EEECCChhHHHHHHhcCC
Confidence            9999999986 5555553

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=99.09  E-value=2.5e-08  Score=99.76  Aligned_cols=65  Identities=20%  Similarity=0.226  Sum_probs=49.4

Q ss_pred             ccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCE
Q 012845          149 VAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNI  228 (455)
Q Consensus       149 ~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~  228 (455)
                      ..+++-..+.+.|.+.+.+.|+                  ..+..++.+..++.....+.|.+.   +|     ++.+|.
T Consensus       150 ~~~~~p~~~~~~l~~~~~~~G~------------------~~~~~~~~~~~~~~~~~~~~v~t~---~g-----~i~a~~  203 (387)
T COG0665         150 GGHLDPRLLTRALAAAAEELGV------------------VIIEGGTPVTSLERDGRVVGVETD---GG-----TIEADK  203 (387)
T ss_pred             CCcCCHHHHHHHHHHHHHhcCC------------------eEEEccceEEEEEecCcEEEEEeC---Cc-----cEEeCE
Confidence            3456667899999999999985                  367779999998875233445544   55     589999


Q ss_pred             EEeecCCCchh
Q 012845          229 LIGTDGAGSTV  239 (455)
Q Consensus       229 vV~AdG~~S~v  239 (455)
                      ||.|.|.++..
T Consensus       204 vv~a~G~~~~~  214 (387)
T COG0665         204 VVLAAGAWAGE  214 (387)
T ss_pred             EEEcCchHHHH
Confidence            99999999863

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.08  E-value=8.9e-10  Score=113.41  Aligned_cols=144  Identities=22%  Similarity=0.301  Sum_probs=85.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCC-cccccceEEee
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPP-VDLWRKFIYCT  122 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~-~~~~~~~~~~~  122 (455)
                      .+|+|||||++||++|..|.+.|++|++|||++..+                    |+|..-...... ...|.....  
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iG--------------------G~W~~~~~~~~g~~~~y~sl~~--   59 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIG--------------------GLWRYTENPEDGRSSVYDSLHT--   59 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSS--------------------GGGCHSTTCCCSEGGGSTT-B---
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCC--------------------ccCeeCCcCCCCccccccceEE--
Confidence            579999999999999999999999999999998762                    222100000000 001111100  


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                      +.+.......+...+.+        .....++.++.++|.+.++..+..                 ..|+++++|++++.
T Consensus        60 n~sk~~~~fsdfp~p~~--------~p~f~~~~~v~~Yl~~Ya~~f~L~-----------------~~I~fnt~V~~v~~  114 (531)
T PF00743_consen   60 NTSKEMMAFSDFPFPED--------YPDFPSHSEVLEYLESYAEHFGLR-----------------KHIRFNTEVVSVER  114 (531)
T ss_dssp             SS-GGGSCCTTS-HCCC--------CSSSEBHHHHHHHHHHHHHHTTGG-----------------GGEETSEEEEEEEE
T ss_pred             eeCchHhcCCCcCCCCC--------CCCCCCHHHHHHHHHHHHhhhCCc-----------------ceEEEccEEeEeee
Confidence            00011111111110111        112457899999999999998762                 37999999999987


Q ss_pred             cC-----CceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          203 TD-----QCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       203 ~~-----~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      .+     +.|.|++.  .+|+  .++..+|.||.|+|.++.
T Consensus       115 ~~d~~~~~~W~V~~~--~~g~--~~~~~fD~VvvatG~~~~  151 (531)
T PF00743_consen  115 DPDFSATGKWEVTTE--NDGK--EETEEFDAVVVATGHFSK  151 (531)
T ss_dssp             ETTTT-ETEEEEEET--TTTE--EEEEEECEEEEEE-SSSC
T ss_pred             ccccCCCceEEEEee--cCCe--EEEEEeCeEEEcCCCcCC
Confidence            54     35767654  2332  345578999999999873

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=99.07  E-value=2.4e-09  Score=104.42  Aligned_cols=144  Identities=17%  Similarity=0.272  Sum_probs=84.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEE-cCCCCCCCCCcccccChhH----HHHHHhhhchHHHHHhcCCCcccccceE
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVL-EKNKAFSTHPQAHFINNRY----ALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~-Er~~~~~~~~~~~~l~~~~----~~~l~~~~gl~~~l~~~~~~~~~~~~~~  119 (455)
                      ||+|||||.||+.||+++|+.|.+|+|| ++.+....-.|.-.+...+    .+-++.+.|+.-.+.+...     ..+.
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~-----i~~~   75 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETG-----IHFR   75 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHE-----EEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhh-----hhhh
Confidence            7999999999999999999999999999 5555544444443333221    1222333233222211100     0111


Q ss_pred             EeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEE
Q 012845          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (455)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~  199 (455)
                      ......|...                ......++|..+.+.+.+.+++.+.                  .+| ...+|++
T Consensus        76 ~lN~skGpav----------------~a~r~qvDr~~y~~~~~~~l~~~~n------------------l~i-~~~~V~~  120 (392)
T PF01134_consen   76 MLNRSKGPAV----------------HALRAQVDRDKYSRAMREKLESHPN------------------LTI-IQGEVTD  120 (392)
T ss_dssp             EESTTS-GGC----------------TEEEEEE-HHHHHHHHHHHHHTSTT------------------EEE-EES-EEE
T ss_pred             cccccCCCCc----------------cchHhhccHHHHHHHHHHHHhcCCC------------------eEE-EEcccce
Confidence            1111111111                1112468999999999999988653                  466 4679999


Q ss_pred             eeecCCceE-EEEEeccCCcceeEEEEeCEEEeecCC
Q 012845          200 VSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGA  235 (455)
Q Consensus       200 i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~  235 (455)
                      +..+++.+. |.+.   +|.    .+.+|.||.|+|.
T Consensus       121 l~~e~~~v~GV~~~---~g~----~~~a~~vVlaTGt  150 (392)
T PF01134_consen  121 LIVENGKVKGVVTK---DGE----EIEADAVVLATGT  150 (392)
T ss_dssp             EEECTTEEEEEEET---TSE----EEEECEEEE-TTT
T ss_pred             EEecCCeEEEEEeC---CCC----EEecCEEEEeccc
Confidence            998887766 4443   664    8899999999998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK07233 hypothetical protein; Provisional

Probab=99.07  E-value=3.9e-08  Score=99.88  Aligned_cols=36  Identities=31%  Similarity=0.489  Sum_probs=33.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST   80 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~   80 (455)
                      +|+|||||++||++|+.|+++|++|+|+|+++.+..
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG   36 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG   36 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCC
Confidence            699999999999999999999999999999987753

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.07  E-value=3.1e-09  Score=108.63  Aligned_cols=77  Identities=21%  Similarity=0.245  Sum_probs=57.2

Q ss_pred             ccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecC-CceEEEEEeccCCcceeEEEEeC
Q 012845          149 VAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD-QCINVIASFLKEGKCTERNIQCN  227 (455)
Q Consensus       149 ~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~~~~~~d  227 (455)
                      ...++...+...|.+.+.+.|+                   +|+++++|++++.++ +.+.+++...++|.  ..++++|
T Consensus       172 ~g~Vdp~~l~~aL~~~a~~~Gv-------------------~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~--~~~i~A~  230 (483)
T TIGR01320       172 GTDVDFGALTKQLLGYLVQNGT-------------------TIRFGHEVRNLKRQSDGSWTVTVKNTRTGG--KRTLNTR  230 (483)
T ss_pred             CEEECHHHHHHHHHHHHHhCCC-------------------EEEeCCEEEEEEEcCCCeEEEEEeeccCCc--eEEEECC
Confidence            3567888999999999998887                   999999999998754 35666543112232  2268999


Q ss_pred             EEEeecCCCch-hhhhcCCC
Q 012845          228 ILIGTDGAGST-VRKLVGID  246 (455)
Q Consensus       228 ~vV~AdG~~S~-vr~~l~~~  246 (455)
                      .||.|.|.+|. +++.+|..
T Consensus       231 ~VV~AAG~~s~~La~~~Gi~  250 (483)
T TIGR01320       231 FVFVGAGGGALPLLQKSGIP  250 (483)
T ss_pred             EEEECCCcchHHHHHHcCCC
Confidence            99888888875 77777755

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.06  E-value=6.8e-08  Score=97.53  Aligned_cols=183  Identities=13%  Similarity=0.088  Sum_probs=109.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-CCCcccccChhHHHHHHhhh-c-hHHHHHhc-----CCCc
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS-THPQAHFINNRYALVFRKLD-G-LAEEIERS-----QPPV  112 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~-~~~~~~~l~~~~~~~l~~~~-g-l~~~l~~~-----~~~~  112 (455)
                      +..+||+|||||+.|+-+|.-++.+|++|.|+|+++... ..++...|--.+++.|.+.. . +.+.+.+.     ..|.
T Consensus        10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH   89 (532)
T COG0578          10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPH   89 (532)
T ss_pred             ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCcc
Confidence            478999999999999999999999999999999998763 33444555556667776652 2 22333221     1111


Q ss_pred             ccccceEEeecCC---CCccc-----------c-------ccCCC-------cccccccc----CCccccccchhhHHHH
Q 012845          113 DLWRKFIYCTSVT---GPILG-----------S-------VDHMQ-------PQDFEKVV----SPVSVAHFSQYKLNKL  160 (455)
Q Consensus       113 ~~~~~~~~~~~~~---~~~~~-----------~-------~~~~~-------~~~~~~~~----~~~~~~~i~r~~l~~~  160 (455)
                      -.+.........+   +....           .       .....       .+.+....    .-+.-..++-..|.-.
T Consensus        90 ~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~  169 (532)
T COG0578          90 LVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAA  169 (532)
T ss_pred             ccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHH
Confidence            1111100100001   00000           0       00000       00000000    0011233555677777


Q ss_pred             HHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch-h
Q 012845          161 LLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST-V  239 (455)
Q Consensus       161 L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~-v  239 (455)
                      ....+.+.|.                   ++...++|+++..+++-+-|.+...  .++.+..+.++.||-|+|+++- +
T Consensus       170 ~a~~A~~~Ga-------------------~il~~~~v~~~~re~~v~gV~~~D~--~tg~~~~ira~~VVNAaGpW~d~i  228 (532)
T COG0578         170 NARDAAEHGA-------------------EILTYTRVESLRREGGVWGVEVEDR--ETGETYEIRARAVVNAAGPWVDEI  228 (532)
T ss_pred             HHHHHHhccc-------------------chhhcceeeeeeecCCEEEEEEEec--CCCcEEEEEcCEEEECCCccHHHH
Confidence            8888888887                   8999999999999887444666633  3344668999999999999997 5


Q ss_pred             hhhcC
Q 012845          240 RKLVG  244 (455)
Q Consensus       240 r~~l~  244 (455)
                      ++..+
T Consensus       229 ~~~~~  233 (532)
T COG0578         229 LEMAG  233 (532)
T ss_pred             HHhhc
Confidence            66554

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.05  E-value=6.6e-09  Score=106.36  Aligned_cols=76  Identities=25%  Similarity=0.400  Sum_probs=55.3

Q ss_pred             cccchhhHHHHHHHHHHhcc-cccccCCCcccccccccccceEEeccEEEEeeecCCc-eEEEEEeccCCcceeEEEEeC
Q 012845          150 AHFSQYKLNKLLLKQLEKLN-FKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCN  227 (455)
Q Consensus       150 ~~i~r~~l~~~L~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~-~~v~~~~~~~g~~~~~~~~~d  227 (455)
                      ..++...+.+.|.+.+++.| +                   +|+++++|++++..+++ +.+++....+|.  ..++.+|
T Consensus       178 g~Vd~~~l~~aL~~~a~~~Ggv-------------------~i~~~teV~~I~~~~dg~~~v~~~~~~~G~--~~~i~A~  236 (494)
T PRK05257        178 TDVNFGALTRQLVGYLQKQGNF-------------------ELQLGHEVRDIKRNDDGSWTVTVKDLKTGE--KRTVRAK  236 (494)
T ss_pred             eEECHHHHHHHHHHHHHhCCCe-------------------EEEeCCEEEEEEECCCCCEEEEEEEcCCCc--eEEEEcC
Confidence            45777889999999998876 5                   89999999999875554 666554111232  1268999


Q ss_pred             EEEeecCCCch-hhhhcCCC
Q 012845          228 ILIGTDGAGST-VRKLVGID  246 (455)
Q Consensus       228 ~vV~AdG~~S~-vr~~l~~~  246 (455)
                      +||.|.|.+|. +++.+|..
T Consensus       237 ~VVvaAGg~s~~L~~~~Gi~  256 (494)
T PRK05257        237 FVFIGAGGGALPLLQKSGIP  256 (494)
T ss_pred             EEEECCCcchHHHHHHcCCC
Confidence            99888887765 77777654

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.04  E-value=4.6e-09  Score=94.94  Aligned_cols=35  Identities=34%  Similarity=0.537  Sum_probs=32.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      .+|+|||+||+|+++|+.|+..|++|+||||..-.
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~Gv   36 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGV   36 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCc
Confidence            36999999999999999999999999999998654

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.04  E-value=1.8e-09  Score=103.84  Aligned_cols=112  Identities=24%  Similarity=0.386  Sum_probs=78.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEeec
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~~  123 (455)
                      +||+|||||++|+++|..|++.|++|+|||+.+. .    +.....   ..+..+|++                      
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~-g----g~~~~~---~~~~~~~~~----------------------   50 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP-G----GQLTTT---TEVENYPGF----------------------   50 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC-C----cceeec---ccccccCCC----------------------
Confidence            6899999999999999999999999999998752 1    100000   000000000                      


Q ss_pred             CCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeec
Q 012845          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (455)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~  203 (455)
                                               ...+....+...+.+.+.+.|+                   +++. .+|++++..
T Consensus        51 -------------------------~~~~~~~~~~~~l~~~~~~~gv-------------------~~~~-~~v~~v~~~   85 (300)
T TIGR01292        51 -------------------------PEGISGPELMEKMKEQAVKFGA-------------------EIIY-EEVIKVDLS   85 (300)
T ss_pred             -------------------------CCCCChHHHHHHHHHHHHHcCC-------------------eEEE-EEEEEEEec
Confidence                                     0012234677788888888886                   7777 899999887


Q ss_pred             CCceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       204 ~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                      ++.+.+...   ++.    ++.+|.||.|+|...
T Consensus        86 ~~~~~v~~~---~~~----~~~~d~liiAtG~~~  112 (300)
T TIGR01292        86 DRPFKVKTG---DGK----EYTAKAVIIATGASA  112 (300)
T ss_pred             CCeeEEEeC---CCC----EEEeCEEEECCCCCc
Confidence            776766654   554    789999999999754

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.02  E-value=8.9e-09  Score=106.34  Aligned_cols=39  Identities=28%  Similarity=0.399  Sum_probs=35.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      ..++||||||+|++|+++|+.+++.|.+|+|+||.+...
T Consensus        59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~G   97 (506)
T PRK06481         59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAG   97 (506)
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence            357899999999999999999999999999999987653

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.02  E-value=4.7e-09  Score=106.16  Aligned_cols=138  Identities=19%  Similarity=0.257  Sum_probs=83.4

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccce
Q 012845           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKF  118 (455)
Q Consensus        40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~-V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~  118 (455)
                      .+.++||+|||||++|+++|++|.++|.. ++||||+....   ..+..+        .+|++.-.     .+       
T Consensus         5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~G---g~W~~~--------ry~~l~~~-----~p-------   61 (443)
T COG2072           5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVG---GTWRYN--------RYPGLRLD-----SP-------   61 (443)
T ss_pred             cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcC---Ccchhc--------cCCceEEC-----Cc-------
Confidence            36789999999999999999999999999 99999998762   111111        11222100     00       


Q ss_pred             EEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEE
Q 012845          119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV  198 (455)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~  198 (455)
                              .....++..+-. .     .  ...-....+..++.+.+++.+..                 -.+.++++|.
T Consensus        62 --------~~~~~~~~~p~~-~-----~--~~~~~~~~~~~y~~~~~~~y~~~-----------------~~i~~~~~v~  108 (443)
T COG2072          62 --------KWLLGFPFLPFR-W-----D--EAFAPFAEIKDYIKDYLEKYGLR-----------------FQIRFNTRVE  108 (443)
T ss_pred             --------hheeccCCCccC-C-----c--ccCCCcccHHHHHHHHHHHcCce-----------------eEEEcccceE
Confidence                    000000000000 0     0  00112334677777888877752                 2666777766


Q ss_pred             Eeeec--CCceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          199 SVSAT--DQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       199 ~i~~~--~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      .+..+  +..+.|++.   ++...  ++++|.||.|+|..|.
T Consensus       109 ~~~~~~~~~~w~V~~~---~~~~~--~~~a~~vV~ATG~~~~  145 (443)
T COG2072         109 VADWDEDTKRWTVTTS---DGGTG--ELTADFVVVATGHLSE  145 (443)
T ss_pred             EEEecCCCCeEEEEEc---CCCee--eEecCEEEEeecCCCC
Confidence            66554  446777777   55422  1679999999998763

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.01  E-value=1e-08  Score=104.34  Aligned_cols=77  Identities=22%  Similarity=0.252  Sum_probs=56.0

Q ss_pred             ccccchhhHHHHHHHHHHhc-ccccccCCCcccccccccccceEEeccEEEEeeec-CCceEEEEEeccCCcceeEEEEe
Q 012845          149 VAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT-DQCINVIASFLKEGKCTERNIQC  226 (455)
Q Consensus       149 ~~~i~r~~l~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~-~~~~~v~~~~~~~g~~~~~~~~~  226 (455)
                      ...++...|.+.|.+.+.+. |+                   +++++++|++++.. ++.|.+.+....++.  ..++++
T Consensus       178 ~~~VD~~~L~~aL~~~l~~~~Gv-------------------~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~--~~~i~A  236 (497)
T PRK13339        178 GTDVNFGALTRKLAKHLESHPNA-------------------QVKYNHEVVDLERLSDGGWEVTVKDRNTGE--KREQVA  236 (497)
T ss_pred             ceecCHHHHHHHHHHHHHhCCCc-------------------EEEeCCEEEEEEECCCCCEEEEEEecCCCc--eEEEEc
Confidence            35678888999998888654 55                   99999999999877 666766542111231  125799


Q ss_pred             CEEEeecCCCch-hhhhcCCC
Q 012845          227 NILIGTDGAGST-VRKLVGID  246 (455)
Q Consensus       227 d~vV~AdG~~S~-vr~~l~~~  246 (455)
                      |+||.|.|.+|. +.+.+|..
T Consensus       237 d~VV~AAGawS~~La~~~Gi~  257 (497)
T PRK13339        237 DYVFIGAGGGAIPLLQKSGIP  257 (497)
T ss_pred             CEEEECCCcchHHHHHHcCCC
Confidence            999999999985 67777654

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.00  E-value=7.2e-08  Score=98.46  Aligned_cols=35  Identities=31%  Similarity=0.478  Sum_probs=32.5

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFS   79 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g--~~V~l~Er~~~~~   79 (455)
                      +|+|||||+|||++|+.|+++|  ++|+|||+++.+.
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~G   38 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLG   38 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCc
Confidence            6999999999999999999988  8999999988764

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.99  E-value=2.7e-09  Score=109.38  Aligned_cols=37  Identities=24%  Similarity=0.432  Sum_probs=34.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +.++||||||+|++|+++|+.|++.|.+|+|+||.+.
T Consensus         2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~   38 (466)
T PRK08274          2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPR   38 (466)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            5678999999999999999999999999999999864

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.97  E-value=5.1e-09  Score=103.90  Aligned_cols=34  Identities=29%  Similarity=0.557  Sum_probs=32.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +||+|||||++|+++|+.|+++|.+|+|+|+...
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~   34 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR   34 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            5999999999999999999999999999999864

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PLN02661 Putative thiazole synthesis

Probab=98.96  E-value=1.6e-08  Score=97.29  Aligned_cols=37  Identities=35%  Similarity=0.489  Sum_probs=33.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~-g~~V~l~Er~~~~   78 (455)
                      .++||+|||||++|+++|+.|++. |++|+|+||+..+
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~  128 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSP  128 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence            368999999999999999999986 8999999998765

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=98.96  E-value=7.4e-08  Score=98.76  Aligned_cols=35  Identities=29%  Similarity=0.522  Sum_probs=31.7

Q ss_pred             CEEEECCCHHHHHHHHHHHhC------CCCEEEEcCCCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKL------GIKCSVLEKNKAFS   79 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~------g~~V~l~Er~~~~~   79 (455)
                      +|+|||||++||++|+.|++.      |++|+|+|+++...
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~G   43 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLG   43 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCcc
Confidence            699999999999999999986      48999999998764

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=4.8e-09  Score=100.19  Aligned_cols=114  Identities=25%  Similarity=0.377  Sum_probs=76.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~-V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      +.+||+|||||||||++|+.++++|++ ++|+|+... .  +   .+            .....       +..|     
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~-g--g---~~------------~~~~~-------veny-----   51 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEP-G--G---QL------------TKTTD-------VENY-----   51 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCc-C--C---cc------------cccee-------ecCC-----
Confidence            579999999999999999999999999 667776532 1  0   00            00000       0000     


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                                               |-....+.-..|.+-+.+.+...++                   ++.. ..|..+
T Consensus        52 -------------------------pg~~~~~~g~~L~~~~~~~a~~~~~-------------------~~~~-~~v~~v   86 (305)
T COG0492          52 -------------------------PGFPGGILGPELMEQMKEQAEKFGV-------------------EIVE-DEVEKV   86 (305)
T ss_pred             -------------------------CCCccCCchHHHHHHHHHHHhhcCe-------------------EEEE-EEEEEE
Confidence                                     0001123456788888888888886                   5555 778888


Q ss_pred             eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      +..++...|.+.   ++     +++++.||.|+|....
T Consensus        87 ~~~~~~F~v~t~---~~-----~~~ak~vIiAtG~~~~  116 (305)
T COG0492          87 ELEGGPFKVKTD---KG-----TYEAKAVIIATGAGAR  116 (305)
T ss_pred             eecCceEEEEEC---CC-----eEEEeEEEECcCCccc
Confidence            776655566655   55     5899999999998663

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.95  E-value=6.4e-09  Score=107.82  Aligned_cols=114  Identities=21%  Similarity=0.355  Sum_probs=82.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      ...+||+||||||||+++|..|+++|++|+|+|+.  .    .| .+.       ... ++.              .+  
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~----GG-~~~-------~~~-~~~--------------~~--  257 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--F----GG-QVL-------DTM-GIE--------------NF--  257 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--C----CC-eee-------ccC-ccc--------------cc--
Confidence            34699999999999999999999999999999753  1    11 110       000 000              00  


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                               .               .  .......++.+.|.+.+.+.|+                   .++.+++|+++
T Consensus       258 ---------~---------------~--~~~~~~~~l~~~l~~~~~~~gv-------------------~i~~~~~V~~I  292 (517)
T PRK15317        258 ---------I---------------S--VPETEGPKLAAALEEHVKEYDV-------------------DIMNLQRASKL  292 (517)
T ss_pred             ---------C---------------C--CCCCCHHHHHHHHHHHHHHCCC-------------------EEEcCCEEEEE
Confidence                     0               0  0012345788889999999887                   88999999999


Q ss_pred             eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                      ...++.+.+.+.   ++.    .+.+|.||.|+|...
T Consensus       293 ~~~~~~~~V~~~---~g~----~i~a~~vViAtG~~~  322 (517)
T PRK15317        293 EPAAGLIEVELA---NGA----VLKAKTVILATGARW  322 (517)
T ss_pred             EecCCeEEEEEC---CCC----EEEcCEEEECCCCCc
Confidence            887666667655   554    689999999999865

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.95  E-value=1.9e-08  Score=101.19  Aligned_cols=63  Identities=11%  Similarity=0.120  Sum_probs=52.5

Q ss_pred             ccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCc-eEEEEEeccCCcceeEEEEeC
Q 012845          149 VAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCN  227 (455)
Q Consensus       149 ~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~-~~v~~~~~~~g~~~~~~~~~d  227 (455)
                      ..+++...+.+.|...+.++|+                   .|..++.|+++....+. +-|.+.   -|     .+++.
T Consensus       181 DG~~DP~~lC~ala~~A~~~GA-------------------~viE~cpV~~i~~~~~~~~gVeT~---~G-----~iet~  233 (856)
T KOG2844|consen  181 DGVMDPAGLCQALARAASALGA-------------------LVIENCPVTGLHVETDKFGGVETP---HG-----SIETE  233 (856)
T ss_pred             CcccCHHHHHHHHHHHHHhcCc-------------------EEEecCCcceEEeecCCccceecc---Cc-----ceecc
Confidence            4668889999999999999998                   99999999999765443 346655   56     68999


Q ss_pred             EEEeecCCCch
Q 012845          228 ILIGTDGAGST  238 (455)
Q Consensus       228 ~vV~AdG~~S~  238 (455)
                      .+|.|.|.+..
T Consensus       234 ~~VNaaGvWAr  244 (856)
T KOG2844|consen  234 CVVNAAGVWAR  244 (856)
T ss_pred             eEEechhHHHH
Confidence            99999999975

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.94  E-value=4.4e-07  Score=93.07  Aligned_cols=36  Identities=25%  Similarity=0.413  Sum_probs=33.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAFS   79 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~----g~~V~l~Er~~~~~   79 (455)
                      .||+|||||++||++|+.|+++    |++|+|+|+++.+.
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~G   42 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVG   42 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCc
Confidence            6899999999999999999999    99999999998664

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.94  E-value=4.1e-08  Score=103.29  Aligned_cols=40  Identities=25%  Similarity=0.351  Sum_probs=35.5

Q ss_pred             cCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        39 ~~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      +...++||||||||+|||++|+.+++.|.+|+|+||....
T Consensus         8 ~~~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~   47 (598)
T PRK09078          8 IIDHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPT   47 (598)
T ss_pred             ccccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence            3345789999999999999999999999999999998643

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.93  E-value=4.3e-08  Score=102.01  Aligned_cols=38  Identities=24%  Similarity=0.377  Sum_probs=35.0

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..++||+|||+|+|||++|+.+++.|.+|+|+||....
T Consensus        14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~   51 (541)
T PRK07804         14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALD   51 (541)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCC
Confidence            45789999999999999999999999999999998764

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.93  E-value=3.5e-08  Score=104.35  Aligned_cols=37  Identities=24%  Similarity=0.337  Sum_probs=34.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      .++||+|||||.|||++|+.+++.|.+|+|+||...+
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~   70 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP   70 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence            4689999999999999999999999999999987654

>PRK07121 hypothetical protein; Validated

Probab=98.92  E-value=1.2e-08  Score=105.35  Aligned_cols=38  Identities=26%  Similarity=0.394  Sum_probs=35.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...+||||||+|.||+++|+.+++.|.+|+|+||.+..
T Consensus        18 ~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~   55 (492)
T PRK07121         18 DDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGA   55 (492)
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            35789999999999999999999999999999998764

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.91  E-value=3.7e-08  Score=103.38  Aligned_cols=66  Identities=20%  Similarity=0.161  Sum_probs=47.3

Q ss_pred             hhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCEEEeec
Q 012845          155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTD  233 (455)
Q Consensus       155 ~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~Ad  233 (455)
                      ..+...|.+.+.+.|+                   ++++++.++++..+++.+. +......+|.  ...+.++.||.|+
T Consensus       129 ~~i~~~L~~~~~~~gv-------------------~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~--~~~i~Ak~VVlAt  187 (566)
T TIGR01812       129 HALLHTLYEQCLKLGV-------------------SFFNEYFALDLIHDDGRVRGVVAYDLKTGE--IVFFRAKAVVLAT  187 (566)
T ss_pred             HHHHHHHHHHHHHcCC-------------------EEEeccEEEEEEEeCCEEEEEEEEECCCCc--EEEEECCeEEECC
Confidence            3577888888888776                   9999999999987665543 3332112332  3468999999999


Q ss_pred             CCCchhhh
Q 012845          234 GAGSTVRK  241 (455)
Q Consensus       234 G~~S~vr~  241 (455)
                      |..+.+..
T Consensus       188 GG~~~~~~  195 (566)
T TIGR01812       188 GGYGRIYK  195 (566)
T ss_pred             CcccCCCC
Confidence            99886543

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.91  E-value=1.9e-08  Score=101.65  Aligned_cols=65  Identities=18%  Similarity=0.185  Sum_probs=47.4

Q ss_pred             chhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCEEEe
Q 012845          153 SQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIG  231 (455)
Q Consensus       153 ~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~  231 (455)
                      .-..+...|.+.+++.|+                   +|+++++++++..+++.+. +......+|  ....+.++.||.
T Consensus       139 ~g~~~~~~l~~~~~~~gv-------------------~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g--~~~~i~A~aVIl  197 (417)
T PF00890_consen  139 GGKALIEALAKAAEEAGV-------------------DIRFNTRVTDLITEDGRVTGVVAENPADG--EFVRIKAKAVIL  197 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTE-------------------EEEESEEEEEEEEETTEEEEEEEEETTTC--EEEEEEESEEEE
T ss_pred             cHHHHHHHHHHHHhhcCe-------------------eeeccceeeeEEEeCCceeEEEEEECCCC--eEEEEeeeEEEe
Confidence            456788999999999987                   9999999999999877655 444322344  345789999999


Q ss_pred             ecCCCch
Q 012845          232 TDGAGST  238 (455)
Q Consensus       232 AdG~~S~  238 (455)
                      |+|..+.
T Consensus       198 AtGG~~~  204 (417)
T PF00890_consen  198 ATGGFGG  204 (417)
T ss_dssp             ----BGG
T ss_pred             ccCcccc
Confidence            9999985

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>TIGR00551 nadB L-aspartate oxidase

Probab=98.91  E-value=3.6e-08  Score=101.47  Aligned_cols=64  Identities=13%  Similarity=0.153  Sum_probs=47.1

Q ss_pred             hhHHHHHHHHHHh-cccccccCCCcccccccccccceEEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCEEEee
Q 012845          155 YKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGT  232 (455)
Q Consensus       155 ~~l~~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~A  232 (455)
                      ..+.+.|.+.+.+ .++                   +++.++.|+++..+++.+. +.+.   +. +....+.++.||.|
T Consensus       128 ~~l~~~L~~~~~~~~gi-------------------~i~~~~~v~~l~~~~g~v~Gv~~~---~~-~~~~~i~A~~VVlA  184 (488)
T TIGR00551       128 REVITTLVKKALNHPNI-------------------RIIEGENALDLLIETGRVVGVWVW---NR-ETVETCHADAVVLA  184 (488)
T ss_pred             HHHHHHHHHHHHhcCCc-------------------EEEECeEeeeeeccCCEEEEEEEE---EC-CcEEEEEcCEEEEC
Confidence            5688888888887 465                   9999999999987655544 4443   21 11236899999999


Q ss_pred             cCCCchhhh
Q 012845          233 DGAGSTVRK  241 (455)
Q Consensus       233 dG~~S~vr~  241 (455)
                      +|.+|.+..
T Consensus       185 tGG~~~~~~  193 (488)
T TIGR00551       185 TGGAGKLYQ  193 (488)
T ss_pred             CCcccCCCC
Confidence            999997543

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.90  E-value=7.9e-08  Score=101.43  Aligned_cols=37  Identities=27%  Similarity=0.357  Sum_probs=34.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..+||||||+|+|||++|+.+++.|.+|+|+||....
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~   85 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPT   85 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCC
Confidence            4689999999999999999999999999999998654

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.90  E-value=3.2e-08  Score=100.73  Aligned_cols=34  Identities=32%  Similarity=0.483  Sum_probs=32.4

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAF   78 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g-~~V~l~Er~~~~   78 (455)
                      ||||||||++|+++|+.++++| .+|+|+||.+..
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~   35 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVI   35 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCC
Confidence            8999999999999999999999 999999998765

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.89  E-value=1.8e-08  Score=105.23  Aligned_cols=113  Identities=18%  Similarity=0.326  Sum_probs=75.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      ...+||+||||||||+++|+.|+++|++|+|||+.. .   + | .+..       .. .+           ..+     
T Consensus         2 ~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~---G-G-~~~~-------~~-~i-----------~~~-----   51 (555)
T TIGR03143         2 EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-F---G-G-QITI-------TS-EV-----------VNY-----   51 (555)
T ss_pred             CCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-C---C-c-eEEe-------cc-cc-----------ccC-----
Confidence            346999999999999999999999999999999853 2   1 1 1100       00 00           000     


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                          .+                      ...+....+.+.+.+.+.+.|+                   .+ .+++|+.+
T Consensus        52 ----pg----------------------~~~~~~~~l~~~l~~~~~~~gv-------------------~~-~~~~V~~i   85 (555)
T TIGR03143        52 ----PG----------------------ILNTTGPELMQEMRQQAQDFGV-------------------KF-LQAEVLDV   85 (555)
T ss_pred             ----CC----------------------CcCCCHHHHHHHHHHHHHHcCC-------------------EE-eccEEEEE
Confidence                00                      0112345677778888888776                   65 47788888


Q ss_pred             eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                      +.+++...+...   ++     .+.++.||.|+|...
T Consensus        86 ~~~~~~~~V~~~---~g-----~~~a~~lVlATGa~p  114 (555)
T TIGR03143        86 DFDGDIKTIKTA---RG-----DYKTLAVLIATGASP  114 (555)
T ss_pred             EecCCEEEEEec---CC-----EEEEeEEEECCCCcc
Confidence            876554555543   44     578999999999865

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.89  E-value=4.5e-08  Score=103.09  Aligned_cols=38  Identities=24%  Similarity=0.327  Sum_probs=34.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~   78 (455)
                      ..++||+|||||+|||++|+.+++.  |.+|+|+||....
T Consensus         9 ~~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~   48 (608)
T PRK06854          9 EVDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK   48 (608)
T ss_pred             eeEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence            3468999999999999999999998  9999999998754

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.89  E-value=1.4e-08  Score=105.14  Aligned_cols=114  Identities=18%  Similarity=0.357  Sum_probs=80.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      ...+||+||||||||+++|+.|++.|++|+|+|..  .    .|. +.       ... ++              ..+  
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~----GG~-~~-------~~~-~~--------------~~~--  258 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--I----GGQ-VK-------DTV-GI--------------ENL--  258 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--C----CCc-cc-------cCc-Cc--------------ccc--
Confidence            45699999999999999999999999999999742  1    110 00       000 00              000  


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                              .                .  .......++.+.+.+.+.+.|+                   .++.+++|+++
T Consensus       259 --------~----------------~--~~~~~~~~l~~~l~~~l~~~gv-------------------~i~~~~~V~~I  293 (515)
T TIGR03140       259 --------I----------------S--VPYTTGSQLAANLEEHIKQYPI-------------------DLMENQRAKKI  293 (515)
T ss_pred             --------c----------------c--cCCCCHHHHHHHHHHHHHHhCC-------------------eEEcCCEEEEE
Confidence                    0                0  0012345677888888888886                   89999999999


Q ss_pred             eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                      +.+++.+.+.+.   +|.    .+.+|.||.|+|...
T Consensus       294 ~~~~~~~~v~~~---~g~----~i~~d~lIlAtGa~~  323 (515)
T TIGR03140       294 ETEDGLIVVTLE---SGE----VLKAKSVIVATGARW  323 (515)
T ss_pred             EecCCeEEEEEC---CCC----EEEeCEEEECCCCCc
Confidence            877666666655   554    789999999999864

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.88  E-value=9.6e-08  Score=100.37  Aligned_cols=37  Identities=35%  Similarity=0.496  Sum_probs=34.0

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ...+||||||+|+|||++|+.+++.|.+|+|+||...
T Consensus        10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~   46 (591)
T PRK07057         10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFP   46 (591)
T ss_pred             cccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            4568999999999999999999999999999999754

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.88  E-value=8.2e-08  Score=101.25  Aligned_cols=38  Identities=29%  Similarity=0.408  Sum_probs=34.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..++||+|||||.|||++|+.+++.|.+|+|+||....
T Consensus        27 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~   64 (617)
T PTZ00139         27 DHTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPT   64 (617)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCC
Confidence            34689999999999999999999999999999998754

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.88  E-value=5.6e-08  Score=102.02  Aligned_cols=37  Identities=24%  Similarity=0.420  Sum_probs=33.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~   78 (455)
                      ..+||+|||||+||+++|+.+++.  |.+|+|+||....
T Consensus         2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~   40 (575)
T PRK05945          2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPI   40 (575)
T ss_pred             CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCC
Confidence            468999999999999999999987  4899999998654

>PLN02815 L-aspartate oxidase

Probab=98.86  E-value=9.2e-08  Score=100.05  Aligned_cols=57  Identities=18%  Similarity=0.340  Sum_probs=43.0

Q ss_pred             cCCCCCcccccccCCCcccccCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           19 FPYPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      .-+|....+.++.+......  ..++||||||+|.|||++|+.+++.| +|+|+||.+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~--~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~   63 (594)
T PLN02815          7 TRKPIGAERASSASRLDDES--TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPH   63 (594)
T ss_pred             cccCcccccCCcccccccCc--ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCC
Confidence            34455544444444444433  45689999999999999999999999 99999998764

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.86  E-value=9.8e-08  Score=99.86  Aligned_cols=38  Identities=21%  Similarity=0.343  Sum_probs=34.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...+||||||+|.||+++|+.+++.|.+|+|+||.+..
T Consensus         3 ~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~   40 (566)
T PRK06452          3 KIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPT   40 (566)
T ss_pred             cccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence            45789999999999999999999999999999998643

>PLN02612 phytoene desaturase

Probab=98.86  E-value=2.3e-06  Score=89.54  Aligned_cols=64  Identities=23%  Similarity=0.322  Sum_probs=48.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCc------c----------cccChhHHHHHHhhhchHHH
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQ------A----------HFINNRYALVFRKLDGLAEE  104 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~------~----------~~l~~~~~~~l~~~~gl~~~  104 (455)
                      ....+|+|||||++||++|+.|+++|++|+|+|+++....+..      +          ....++..++++++ |+.+.
T Consensus        91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~el-G~~~~  169 (567)
T PLN02612         91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGEL-GINDR  169 (567)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHh-CCccc
Confidence            3467999999999999999999999999999999875432211      1          01235677888888 88654


Q ss_pred             H
Q 012845          105 I  105 (455)
Q Consensus       105 l  105 (455)
                      +
T Consensus       170 ~  170 (567)
T PLN02612        170 L  170 (567)
T ss_pred             c
Confidence            3

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.85  E-value=8.8e-08  Score=96.95  Aligned_cols=36  Identities=33%  Similarity=0.404  Sum_probs=32.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..+||||||+|.|||++|+.++ .|.+|+|+||.+..
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~   38 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLN   38 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCC
Confidence            5689999999999999999985 69999999998764

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.84  E-value=1.1e-07  Score=99.78  Aligned_cols=38  Identities=24%  Similarity=0.352  Sum_probs=33.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~   78 (455)
                      +..+||+|||||+|||++|+.+++.  |.+|+|+||....
T Consensus         2 t~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~   41 (582)
T PRK09231          2 TFQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPM   41 (582)
T ss_pred             ceeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence            3568999999999999999999987  4899999998654

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.84  E-value=9.8e-08  Score=100.91  Aligned_cols=38  Identities=26%  Similarity=0.348  Sum_probs=34.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...+||||||+|+||+++|+.+++.|.+|+|+||.+..
T Consensus         6 ~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~   43 (626)
T PRK07803          6 RHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG   43 (626)
T ss_pred             ceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence            45789999999999999999999999999999998654

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.83  E-value=1.6e-07  Score=98.49  Aligned_cols=37  Identities=22%  Similarity=0.456  Sum_probs=34.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      .++||||||+|.|||++|+.+++.|.+|+|+||....
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~   42 (588)
T PRK08958          6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPT   42 (588)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence            4689999999999999999999999999999998654

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.83  E-value=5.8e-08  Score=99.82  Aligned_cols=148  Identities=18%  Similarity=0.229  Sum_probs=85.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-CCCccccc---Chh-HHHHHHhhhchHHHHHhcCCCcccccce
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS-THPQAHFI---NNR-YALVFRKLDGLAEEIERSQPPVDLWRKF  118 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~-~~~~~~~l---~~~-~~~~l~~~~gl~~~l~~~~~~~~~~~~~  118 (455)
                      +||+|||||+||+.+|..+++.|.+|+|+|++.... .-.|...+   ... ..+-++.+.|....+.+....     .+
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i-----~~   75 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGL-----QF   75 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhce-----eh
Confidence            699999999999999999999999999999974321 11111111   110 112222222222222111100     00


Q ss_pred             EEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEE
Q 012845          119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV  198 (455)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~  198 (455)
                      .......+..+                ......+++..+...|.+.+++.+.                  ..++ ...|+
T Consensus        76 r~ln~skgpAV----------------~~~RaQVDr~~y~~~L~e~Le~~pg------------------V~Il-e~~Vv  120 (617)
T TIGR00136        76 RVLNSSKGPAV----------------RATRAQIDKVLYRKAMRNALENQPN------------------LSLF-QGEVE  120 (617)
T ss_pred             eecccCCCCcc----------------cccHHhCCHHHHHHHHHHHHHcCCC------------------cEEE-EeEEE
Confidence            00000000000                0012468899999999999988743                  3554 45777


Q ss_pred             Eeeec-CCceE-EEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          199 SVSAT-DQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       199 ~i~~~-~~~~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      ++..+ ++.+. |.+.   +|.    .+.||.||.|+|.+..
T Consensus       121 ~li~e~~g~V~GV~t~---~G~----~I~Ad~VILATGtfL~  155 (617)
T TIGR00136       121 DLILEDNDEIKGVVTQ---DGL----KFRAKAVIITTGTFLR  155 (617)
T ss_pred             EEEEecCCcEEEEEEC---CCC----EEECCEEEEccCcccC
Confidence            77654 44433 5544   554    7899999999999963

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.83  E-value=9.6e-08  Score=100.33  Aligned_cols=40  Identities=23%  Similarity=0.372  Sum_probs=35.8

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCC---CCEEEEcCCCCCC
Q 012845           40 NEAVVPVLIVGAGPVGLVLSILLTKLG---IKCSVLEKNKAFS   79 (455)
Q Consensus        40 ~~~~~dVvIVGgG~aGl~~A~~La~~g---~~V~l~Er~~~~~   79 (455)
                      +..++||+|||||+|||++|+.+++.|   .+|+|+||.....
T Consensus         2 ~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~   44 (577)
T PRK06069          2 EVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMR   44 (577)
T ss_pred             CceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCC
Confidence            456789999999999999999999998   8999999987643

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.83  E-value=1.8e-07  Score=98.34  Aligned_cols=38  Identities=29%  Similarity=0.299  Sum_probs=33.6

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      |..++||+|||||+||+++|+.+++. .+|+|+||....
T Consensus         2 ~~~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~   39 (583)
T PRK08205          2 QQHRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPT   39 (583)
T ss_pred             cceeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCC
Confidence            34578999999999999999999986 999999998643

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.82  E-value=1.4e-07  Score=100.13  Aligned_cols=38  Identities=29%  Similarity=0.359  Sum_probs=35.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...+||||||||.|||++|+.+++.|.+|+|+||.+..
T Consensus         3 ~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~   40 (657)
T PRK08626          3 IIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAK   40 (657)
T ss_pred             ceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence            46789999999999999999999999999999998764

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.81  E-value=1.3e-07  Score=96.79  Aligned_cols=34  Identities=32%  Similarity=0.481  Sum_probs=32.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +||+|||||+||+++|+.+++.|.+|+|+||.+.
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~   35 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK   35 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            6999999999999999999999999999999854

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.80  E-value=2.1e-07  Score=97.75  Aligned_cols=37  Identities=24%  Similarity=0.375  Sum_probs=33.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      .+.||||||+|+|||++|+.+++.|.+|+|+||.+..
T Consensus         2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~   38 (589)
T PRK08641          2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVK   38 (589)
T ss_pred             CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence            4569999999999999999999999999999998754

>PRK08275 putative oxidoreductase; Provisional

Probab=98.79  E-value=3e-08  Score=103.66  Aligned_cols=38  Identities=24%  Similarity=0.420  Sum_probs=34.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~   78 (455)
                      ...+||+|||||+||+++|+.+++.  |.+|+|+||.+..
T Consensus         7 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~   46 (554)
T PRK08275          7 EVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK   46 (554)
T ss_pred             eEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence            4578999999999999999999987  7899999998763

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.79  E-value=1.5e-07  Score=98.19  Aligned_cols=36  Identities=25%  Similarity=0.346  Sum_probs=32.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ....||||||+|.||+++|+.+ +.|.+|+|+||.+.
T Consensus         5 ~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~   40 (543)
T PRK06263          5 IMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF   40 (543)
T ss_pred             eeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence            3568999999999999999999 89999999999764

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.79  E-value=2.3e-07  Score=97.17  Aligned_cols=38  Identities=21%  Similarity=0.348  Sum_probs=33.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFS   79 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~~   79 (455)
                      ..+||+|||||+|||++|+.+++.  |.+|+|+||.....
T Consensus         2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~   41 (580)
T TIGR01176         2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMR   41 (580)
T ss_pred             cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCC
Confidence            357999999999999999999987  58999999987643

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK06370 mercuric reductase; Validated

Probab=98.77  E-value=1.2e-07  Score=97.11  Aligned_cols=38  Identities=24%  Similarity=0.446  Sum_probs=34.8

Q ss_pred             cCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        39 ~~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ||+.++||+||||||+|+++|+.|++.|.+|+|+|+..
T Consensus         1 ~~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~   38 (463)
T PRK06370          1 TPAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL   38 (463)
T ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence            35677999999999999999999999999999999863

>PRK09897 hypothetical protein; Provisional

Probab=98.74  E-value=1.1e-07  Score=97.80  Aligned_cols=35  Identities=29%  Similarity=0.449  Sum_probs=31.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAF   78 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g--~~V~l~Er~~~~   78 (455)
                      ++|+|||||++|+++|..|.+.+  ++|+|||++..+
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~   38 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA   38 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence            47999999999999999998874  589999998765

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.73  E-value=2.8e-07  Score=95.31  Aligned_cols=35  Identities=20%  Similarity=0.324  Sum_probs=32.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..||||||+|.|||++|+.+++ |.+|+|+||.+..
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~   37 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKR   37 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCC
Confidence            5799999999999999999987 9999999998764

>PLN02676 polyamine oxidase

Probab=98.73  E-value=1.4e-06  Score=89.53  Aligned_cols=39  Identities=31%  Similarity=0.474  Sum_probs=34.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAFS   79 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~~~   79 (455)
                      ...+||+|||||++||++|+.|+++|+ +|+|+|++....
T Consensus        24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~G   63 (487)
T PLN02676         24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIG   63 (487)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCC
Confidence            346799999999999999999999998 699999998654

>PRK10262 thioredoxin reductase; Provisional

Probab=98.72  E-value=2.1e-07  Score=90.67  Aligned_cols=35  Identities=17%  Similarity=0.399  Sum_probs=32.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      ...+||+||||||||+++|..|+++|++|++||+.
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~   38 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM   38 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence            46789999999999999999999999999999954

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.72  E-value=1.8e-07  Score=96.06  Aligned_cols=35  Identities=34%  Similarity=0.605  Sum_probs=33.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      ...|||+||||||+|+++|+.|++.|.+|+|+|+.
T Consensus         2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~   36 (472)
T PRK05976          2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG   36 (472)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence            46799999999999999999999999999999985

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.71  E-value=1.1e-07  Score=99.40  Aligned_cols=38  Identities=26%  Similarity=0.492  Sum_probs=35.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..++||+|||+|++|+++|+.++++|.+|+||||.+..
T Consensus         5 ~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~   42 (557)
T PRK07843          5 VQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHY   42 (557)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            45789999999999999999999999999999998765

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.70  E-value=1.3e-07  Score=96.36  Aligned_cols=33  Identities=24%  Similarity=0.406  Sum_probs=31.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      +|||+||||||+|+++|+.++++|.+|+|+|+.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~   34 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP   34 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence            589999999999999999999999999999985

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.67  E-value=7.8e-07  Score=92.60  Aligned_cols=37  Identities=35%  Similarity=0.514  Sum_probs=33.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...+||||||+|+||+++|+.+++. .+|+|+||....
T Consensus         6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~   42 (536)
T PRK09077          6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLS   42 (536)
T ss_pred             cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCC
Confidence            4568999999999999999999986 899999998754

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.67  E-value=3.9e-07  Score=69.20  Aligned_cols=78  Identities=21%  Similarity=0.383  Sum_probs=63.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEeecC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSV  124 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~~~  124 (455)
                      +|+|||||+.|+-+|..|++.|.+|+|+++.+.+. .                  .+                       
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~-~------------------~~-----------------------   38 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL-P------------------GF-----------------------   38 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS-T------------------TS-----------------------
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh-h------------------hc-----------------------
Confidence            48999999999999999999999999999987652 0                  00                       


Q ss_pred             CCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecC
Q 012845          125 TGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD  204 (455)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~  204 (455)
                                                   ...+.+.+.+.+++.|+                   ++++++.+.+++.++
T Consensus        39 -----------------------------~~~~~~~~~~~l~~~gV-------------------~v~~~~~v~~i~~~~   70 (80)
T PF00070_consen   39 -----------------------------DPDAAKILEEYLRKRGV-------------------EVHTNTKVKEIEKDG   70 (80)
T ss_dssp             -----------------------------SHHHHHHHHHHHHHTTE-------------------EEEESEEEEEEEEET
T ss_pred             -----------------------------CHHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEEEeC
Confidence                                         12455566777778786                   999999999999988


Q ss_pred             CceEEEEE
Q 012845          205 QCINVIAS  212 (455)
Q Consensus       205 ~~~~v~~~  212 (455)
                      +++.|+++
T Consensus        71 ~~~~V~~~   78 (80)
T PF00070_consen   71 DGVEVTLE   78 (80)
T ss_dssp             TSEEEEEE
T ss_pred             CEEEEEEe
Confidence            87666666

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PLN02568 polyamine oxidase

Probab=98.66  E-value=4e-07  Score=94.29  Aligned_cols=41  Identities=22%  Similarity=0.283  Sum_probs=36.6

Q ss_pred             cCCcccCEEEECCCHHHHHHHHHHHhCC-----CCEEEEcCCCCCC
Q 012845           39 SNEAVVPVLIVGAGPVGLVLSILLTKLG-----IKCSVLEKNKAFS   79 (455)
Q Consensus        39 ~~~~~~dVvIVGgG~aGl~~A~~La~~g-----~~V~l~Er~~~~~   79 (455)
                      ||+++.||+|||||++||++|+.|++.|     ++|+|||++..+.
T Consensus         1 ~~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~G   46 (539)
T PLN02568          1 MVAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIG   46 (539)
T ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcC
Confidence            4566789999999999999999999987     8999999988764

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.66  E-value=4.4e-07  Score=92.49  Aligned_cols=34  Identities=21%  Similarity=0.328  Sum_probs=32.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      ++|||+||||||+|+.+|+.|++.|.+|+|+||.
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~   34 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAK   34 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc
Confidence            3589999999999999999999999999999985

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.65  E-value=1.8e-07  Score=98.27  Aligned_cols=38  Identities=32%  Similarity=0.562  Sum_probs=35.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..++||+|||+|++|+++|+.++++|.+|+||||.+..
T Consensus        10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~   47 (581)
T PRK06134         10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVF   47 (581)
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            56799999999999999999999999999999998654

>PLN02487 zeta-carotene desaturase

Probab=98.65  E-value=1.9e-05  Score=82.18  Aligned_cols=63  Identities=21%  Similarity=0.302  Sum_probs=49.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC------ccc----------ccChhHHHHHHhhhchHHHHH
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP------QAH----------FINNRYALVFRKLDGLAEEIE  106 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~------~~~----------~l~~~~~~~l~~~~gl~~~l~  106 (455)
                      +.+|+|||||++||++|+.|++.|++|+|||+.+.+....      .+.          +..++...+++++ |+.+.+.
T Consensus        75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~L-Gl~~~~~  153 (569)
T PLN02487         75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKV-GADENLL  153 (569)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhc-CCccccc
Confidence            4599999999999999999999999999999988764211      111          1236688889998 8876653

>PRK06116 glutathione reductase; Validated

Probab=98.65  E-value=3.7e-07  Score=93.23  Aligned_cols=35  Identities=17%  Similarity=0.350  Sum_probs=32.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      +.+|||+||||||+|+++|+.|+++|++|+|+|+.
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~   36 (450)
T PRK06116          2 TKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK   36 (450)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            35799999999999999999999999999999985

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.65  E-value=5.5e-07  Score=92.33  Aligned_cols=35  Identities=40%  Similarity=0.690  Sum_probs=33.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      .+|||+||||||+|+++|..|+++|.+|+|+||..
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~   37 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK   37 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence            57999999999999999999999999999999865

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.64  E-value=5.9e-07  Score=88.19  Aligned_cols=75  Identities=23%  Similarity=0.381  Sum_probs=56.8

Q ss_pred             cccchhhHHHHHHHHHHhc-ccccccCCCcccccccccccceEEeccEEEEeeecCCc-eEEEEEeccCCcceeEEEEeC
Q 012845          150 AHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCN  227 (455)
Q Consensus       150 ~~i~r~~l~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~-~~v~~~~~~~g~~~~~~~~~d  227 (455)
                      .-++-..|.+.|.+.+.+. |+                   .++++++|+++...+++ |.|.+....++.  ..++.++
T Consensus       176 TDVnFG~LTr~l~~~l~~~~~~-------------------~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~--~~~v~a~  234 (488)
T PF06039_consen  176 TDVNFGALTRQLVEYLQKQKGF-------------------ELHLNHEVTDIKRNGDGRWEVKVKDLKTGE--KREVRAK  234 (488)
T ss_pred             ccccHHHHHHHHHHHHHhCCCc-------------------EEEecCEeCeeEECCCCCEEEEEEecCCCC--eEEEECC
Confidence            3456677888888888876 54                   99999999999988776 888876443443  4588999


Q ss_pred             EEEeecCCCch-hhhhcCC
Q 012845          228 ILIGTDGAGST-VRKLVGI  245 (455)
Q Consensus       228 ~vV~AdG~~S~-vr~~l~~  245 (455)
                      +|+...|.+|. +..+.|+
T Consensus       235 FVfvGAGG~aL~LLqksgi  253 (488)
T PF06039_consen  235 FVFVGAGGGALPLLQKSGI  253 (488)
T ss_pred             EEEECCchHhHHHHHHcCC
Confidence            99888887775 5566554

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.63  E-value=6.4e-07  Score=91.80  Aligned_cols=38  Identities=24%  Similarity=0.463  Sum_probs=35.0

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      +.+|||+||||||+|+++|+.|+++|.+|+|+||....
T Consensus         3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~   40 (461)
T PRK05249          3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNV   40 (461)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccc
Confidence            56799999999999999999999999999999997554

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.63  E-value=2.4e-07  Score=91.51  Aligned_cols=102  Identities=19%  Similarity=0.187  Sum_probs=65.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC--------CcccccChhHHHHHHhhhchHH-HHHhcCCCccc
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH--------PQAHFINNRYALVFRKLDGLAE-EIERSQPPVDL  114 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~--------~~~~~l~~~~~~~l~~~~gl~~-~l~~~~~~~~~  114 (455)
                      .||+|||||++|+.+|+.|++.|++|+|||+++.....        ......+..+...+... |++. ++...+...  
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~-Gll~~em~~lgsl~--   79 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAV-GLLKEEMRRLGSLI--   79 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcC-CchHHHHHHhcchh--
Confidence            58999999999999999999999999999987765321        12233444455566666 7765 343322110  


Q ss_pred             ccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcc
Q 012845          115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLN  169 (455)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g  169 (455)
                           +... +...               .+......++|..+.+.|.+.+++.+
T Consensus        80 -----~~aa-d~~~---------------vPA~gaLvvdR~~~~~~L~~~L~~~p  113 (436)
T PRK05335         80 -----MEAA-DAHR---------------VPAGGALAVDREGFSEYVTEALENHP  113 (436)
T ss_pred             -----eecc-cccC---------------CCCccceecCHHHHHHHHHHHHHcCC
Confidence                 0000 0000               01222346789989999999998764

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.63  E-value=6.4e-07  Score=91.89  Aligned_cols=38  Identities=26%  Similarity=0.536  Sum_probs=34.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      +.+|||+||||||+|+.+|..|++.|.+|+|+|+.+..
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~   39 (471)
T PRK06467          2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTL   39 (471)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcc
Confidence            45799999999999999999999999999999987543

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.63  E-value=9.7e-07  Score=92.93  Aligned_cols=32  Identities=28%  Similarity=0.460  Sum_probs=30.4

Q ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        46 VvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      |+|||+|+|||++|+.+++.|.+|+|+||.+.
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~   32 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDA   32 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCC
Confidence            79999999999999999999999999999873

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.62  E-value=1e-06  Score=87.85  Aligned_cols=63  Identities=21%  Similarity=0.427  Sum_probs=49.3

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCCCCC--------------CcccccC-hhHHHHHHhhhchHHHHHh
Q 012845           45 PVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFSTH--------------PQAHFIN-NRYALVFRKLDGLAEEIER  107 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g--~~V~l~Er~~~~~~~--------------~~~~~l~-~~~~~~l~~~~gl~~~l~~  107 (455)
                      .|+|||||++||++|+.|+|++  ++|+|||+.+.....              ....... +..+++++++ |+.+.+..
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eL-Gled~l~~   80 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKEL-GLEDKLLW   80 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHh-CcHHhhcc
Confidence            5999999999999999999999  999999998665421              1112222 5677888999 99998874


Q ss_pred             c
Q 012845          108 S  108 (455)
Q Consensus       108 ~  108 (455)
                      .
T Consensus        81 ~   81 (444)
T COG1232          81 N   81 (444)
T ss_pred             C
Confidence            3

>PRK14694 putative mercuric reductase; Provisional

Probab=98.62  E-value=8.7e-07  Score=90.90  Aligned_cols=36  Identities=14%  Similarity=0.431  Sum_probs=33.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ..++||+||||||+|+++|..|++.|.+|+|||+..
T Consensus         4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~   39 (468)
T PRK14694          4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT   39 (468)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence            467999999999999999999999999999999863

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.62  E-value=2.7e-07  Score=83.25  Aligned_cols=33  Identities=36%  Similarity=0.686  Sum_probs=30.8

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ||+|||||+||+++|..|++.|++|+|+|+.+.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~   33 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG   33 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence            799999999999999999999999999987654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.61  E-value=3.2e-07  Score=95.86  Aligned_cols=37  Identities=22%  Similarity=0.416  Sum_probs=34.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      .++||+|||+|++|+++|+.|++.|.+|+||||.+..
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~   41 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKV   41 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            4789999999999999999999999999999998654

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.60  E-value=3.1e-07  Score=96.49  Aligned_cols=38  Identities=42%  Similarity=0.659  Sum_probs=35.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..++||||||+|++|+++|+.++++|.+|+|+||....
T Consensus         7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~   44 (574)
T PRK12842          7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVF   44 (574)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            45789999999999999999999999999999998765

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.59  E-value=4e-07  Score=95.58  Aligned_cols=38  Identities=24%  Similarity=0.529  Sum_probs=34.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..++||+|||+|++|+++|+.++++|.+|+|+||....
T Consensus        14 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~   51 (578)
T PRK12843         14 DAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYV   51 (578)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            34789999999999999999999999999999998754

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.58  E-value=9.4e-07  Score=92.05  Aligned_cols=37  Identities=24%  Similarity=0.469  Sum_probs=33.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...+||||||+|.||+++|+.+++ |.+|+|+||.+..
T Consensus         7 ~~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~   43 (553)
T PRK07395          7 PSQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLK   43 (553)
T ss_pred             cccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCCC
Confidence            457899999999999999999975 9999999998754

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.58  E-value=3.2e-07  Score=95.90  Aligned_cols=36  Identities=31%  Similarity=0.491  Sum_probs=34.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ..++||||||+|.|||++|+.+++.|.+|+|+||.+
T Consensus         2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~   37 (549)
T PRK12834          2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN   37 (549)
T ss_pred             CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            467899999999999999999999999999999998

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.57  E-value=2.8e-07  Score=95.40  Aligned_cols=36  Identities=25%  Similarity=0.463  Sum_probs=33.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..+||||||+| +|+++|+.+++.|.+|+|+||.+..
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~   41 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKF   41 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCC
Confidence            47899999999 9999999999999999999998764

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.57  E-value=6.5e-08  Score=70.77  Aligned_cols=32  Identities=41%  Similarity=0.667  Sum_probs=29.5

Q ss_pred             EECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           48 IVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        48 IVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      |||||++||++|+.|++.|++|+||||++.+.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G   32 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG   32 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence            89999999999999999999999999998774

...

>PRK12839 hypothetical protein; Provisional

Probab=98.56  E-value=4.9e-07  Score=94.58  Aligned_cols=38  Identities=29%  Similarity=0.379  Sum_probs=35.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..++||+|||+|++|+++|+.|++.|.+|+|+||....
T Consensus         6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~   43 (572)
T PRK12839          6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTC   43 (572)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            45799999999999999999999999999999998664

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.55  E-value=1.4e-06  Score=89.62  Aligned_cols=34  Identities=35%  Similarity=0.641  Sum_probs=32.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEK   74 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er   74 (455)
                      ...|||+||||||+|+++|+.|++.|.+|+|+|+
T Consensus         2 ~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~   35 (475)
T PRK06327          2 SKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA   35 (475)
T ss_pred             CcceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            3579999999999999999999999999999998

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.55  E-value=3.6e-06  Score=86.11  Aligned_cols=39  Identities=21%  Similarity=0.311  Sum_probs=34.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAFST   80 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~----g~~V~l~Er~~~~~~   80 (455)
                      .+.+|+|||||+|||++|..|++.    |.+|+|||+.+.+..
T Consensus        21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG   63 (576)
T PRK13977         21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGG   63 (576)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCC
Confidence            357899999999999999999995    689999999987654

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=98.55  E-value=2e-05  Score=84.36  Aligned_cols=38  Identities=37%  Similarity=0.471  Sum_probs=35.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      ...+|+|||||++|+++|+.|++.|++|+|+|++..+.
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~G  274 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPG  274 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCC
Confidence            46899999999999999999999999999999997664

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.55  E-value=4.4e-08  Score=95.60  Aligned_cols=150  Identities=19%  Similarity=0.294  Sum_probs=80.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCcccccChhHH--HHHHhhhchHHHHHhcCCCcccccceE
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTHPQAHFINNRYA--LVFRKLDGLAEEIERSQPPVDLWRKFI  119 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g-~~V~l~Er~~~~~~~~~~~~l~~~~~--~~l~~~~gl~~~l~~~~~~~~~~~~~~  119 (455)
                      .+|+++||.||++|++|++|...+ .++..|||.+....+.+ ..+....+  ..|+.       +.....|...+...-
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~g-mll~~~~~q~~fl~D-------lvt~~~P~s~~sfln   73 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPG-MLLPGARMQVSFLKD-------LVTLRDPTSPFSFLN   73 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGG-G--SS-B-SS-TTSS-------SSTTT-TTSTTSHHH
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCc-cCCCCCccccccccc-------cCcCcCCCCcccHHH
Confidence            489999999999999999999886 99999999887654432 11111100  11111       111111111111110


Q ss_pred             EeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEE
Q 012845          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (455)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~  199 (455)
                      |. ...|......             ......++|.++.++|.-.+++.+.                   .++++.+|++
T Consensus        74 YL-~~~~rl~~f~-------------~~~~~~p~R~ef~dYl~Wva~~~~~-------------------~v~~~~~V~~  120 (341)
T PF13434_consen   74 YL-HEHGRLYEFY-------------NRGYFFPSRREFNDYLRWVAEQLDN-------------------QVRYGSEVTS  120 (341)
T ss_dssp             HH-HHTT-HHHHH-------------HH--SS-BHHHHHHHHHHHHCCGTT-------------------TEEESEEEEE
T ss_pred             HH-HHcCChhhhh-------------hcCCCCCCHHHHHHHHHHHHHhCCC-------------------ceEECCEEEE
Confidence            00 0111111100             0112446899999999999888764                   6999999999


Q ss_pred             eeecCC----ceEEEEEeccCCcceeEEEEeCEEEeecCCC
Q 012845          200 VSATDQ----CINVIASFLKEGKCTERNIQCNILIGTDGAG  236 (455)
Q Consensus       200 i~~~~~----~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~  236 (455)
                      |+..++    .+.|.+.   +.++...++.|+-||.|.|..
T Consensus       121 I~~~~~~~~~~~~V~~~---~~~g~~~~~~ar~vVla~G~~  158 (341)
T PF13434_consen  121 IEPDDDGDEDLFRVTTR---DSDGDGETYRARNVVLATGGQ  158 (341)
T ss_dssp             EEEEEETTEEEEEEEEE---ETTS-EEEEEESEEEE----E
T ss_pred             EEEecCCCccEEEEEEe---ecCCCeeEEEeCeEEECcCCC
Confidence            987654    3677775   233334589999999999943

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.54  E-value=7.5e-07  Score=77.02  Aligned_cols=65  Identities=17%  Similarity=0.280  Sum_probs=44.1

Q ss_pred             ccchhhHHHHHHHHHHhcccccccCCCcccccccccccc-eEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEE
Q 012845          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGR-EILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNIL  229 (455)
Q Consensus       151 ~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~v  229 (455)
                      ..+|..+-++|.+.+.+.--             .+..++ ..+...+|+++...+++..+.+.   +|.    .+.+|.|
T Consensus        90 f~pR~~~G~YL~~~~~~~~~-------------~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~---~g~----~~~~d~V  149 (156)
T PF13454_consen   90 FPPRALFGEYLRDRFDRLLA-------------RLPAGITVRHVRAEVVDIRRDDDGYRVVTA---DGQ----SIRADAV  149 (156)
T ss_pred             CCCHHHHHHHHHHHHHHHHH-------------hhcCCcEEEEEeeEEEEEEEcCCcEEEEEC---CCC----EEEeCEE
Confidence            45677777777766554210             011111 23357799999999888877776   775    7899999


Q ss_pred             EeecCC
Q 012845          230 IGTDGA  235 (455)
Q Consensus       230 V~AdG~  235 (455)
                      |.|+|.
T Consensus       150 vLa~Gh  155 (156)
T PF13454_consen  150 VLATGH  155 (156)
T ss_pred             EECCCC
Confidence            999995

>PLN02268 probable polyamine oxidase

Probab=98.53  E-value=1.5e-06  Score=88.42  Aligned_cols=36  Identities=22%  Similarity=0.447  Sum_probs=33.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      .+|+|||||+|||++|+.|.+.|++|+|+|+++...
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~G   36 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIG   36 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence            479999999999999999999999999999988664

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.53  E-value=6.9e-07  Score=90.92  Aligned_cols=36  Identities=28%  Similarity=0.483  Sum_probs=33.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ++|||+||||||||+++|..|++.|.+|+||||.+.
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~   37 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA   37 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc
Confidence            469999999999999999999999999999998763

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.53  E-value=1.5e-06  Score=89.98  Aligned_cols=35  Identities=26%  Similarity=0.264  Sum_probs=31.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+.||+|||+|.|||++|+.++  |.+|+|+||.+.
T Consensus         7 ~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~   41 (513)
T PRK07512          7 ILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL   41 (513)
T ss_pred             CCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence            45689999999999999999997  569999999876

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.50  E-value=1.4e-06  Score=86.22  Aligned_cols=183  Identities=16%  Similarity=0.164  Sum_probs=98.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC-cccccChhHHHHHHhh----h-----chHHHHHh---
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP-QAHFINNRYALVFRKL----D-----GLAEEIER---  107 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~-~~~~l~~~~~~~l~~~----~-----gl~~~l~~---  107 (455)
                      ..++||+|||||-.|.-+|+-.+-+|++|.++|+++..+... ...-|--.+++.|++.    +     =+.+.|.+   
T Consensus        65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLekAi~~lD~~qyrlV~eaL~ER~~  144 (680)
T KOG0042|consen   65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEKAISNLDYEQYRLVKEALNERAN  144 (680)
T ss_pred             CCcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhhhcccHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            446999999999999999999999999999999998764322 2222223334444321    0     01122211   


Q ss_pred             ---cCC----------Ccccccc-------eEEeecCCCCccc-------------cccCCCccccccccCCccccccch
Q 012845          108 ---SQP----------PVDLWRK-------FIYCTSVTGPILG-------------SVDHMQPQDFEKVVSPVSVAHFSQ  154 (455)
Q Consensus       108 ---~~~----------~~~~~~~-------~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~i~r  154 (455)
                         ..+          |+-.|.+       ..++....|....             .++......+.... -+.-...+-
T Consensus       145 lle~APhLs~~lPImlPvy~wwQvpYyw~G~K~YD~vAG~k~Lk~S~~lSk~~alE~fPmL~~~~L~Ga~-VYyDGQ~nD  223 (680)
T KOG0042|consen  145 LLEIAPHLSQPLPIMLPVYKWWQVPYYWVGLKIYDLVAGSKNLKSSYFLSKKEALEIFPMLRKDNLKGAM-VYYDGQHND  223 (680)
T ss_pred             HhhcCccccCCcceeeehhhhhhhhheeecceeeeeeccccccccceeecHHHHHHhCccccccCceeEE-EEecCCCch
Confidence               111          1111211       1111111221111             11111111111000 001122233


Q ss_pred             hhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecC
Q 012845          155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDG  234 (455)
Q Consensus       155 ~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG  234 (455)
                      ..+.-.+.--+.+.|+                   .+....+|+++..++++-.+.....|.-++.+..+.++.||-|+|
T Consensus       224 aRmnl~vAlTA~r~GA-------------------~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATG  284 (680)
T KOG0042|consen  224 ARMNLAVALTAARNGA-------------------TVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATG  284 (680)
T ss_pred             HHHHHHHHHHHHhcch-------------------hhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCC
Confidence            4455555555666776                   677778888887766653233333345566677899999999999


Q ss_pred             CCchhhhhc
Q 012845          235 AGSTVRKLV  243 (455)
Q Consensus       235 ~~S~vr~~l  243 (455)
                      ..|---+++
T Consensus       285 pfsDsIr~M  293 (680)
T KOG0042|consen  285 PFSDSIRKM  293 (680)
T ss_pred             CccHHHHhh
Confidence            999744444

>PLN02529 lysine-specific histone demethylase 1

Probab=98.49  E-value=2.1e-05  Score=83.65  Aligned_cols=38  Identities=37%  Similarity=0.448  Sum_probs=34.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      ...||+|||||++|+++|..|+++|++|+|+|+++...
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~G  196 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPG  196 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCc
Confidence            46799999999999999999999999999999987643

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.48  E-value=7e-07  Score=92.12  Aligned_cols=34  Identities=15%  Similarity=0.302  Sum_probs=32.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      ..|||+||||||+|+.+|+.|+++|.+|+|+|+.
T Consensus         4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~   37 (499)
T PTZ00052          4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV   37 (499)
T ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence            4689999999999999999999999999999974

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.48  E-value=1.3e-06  Score=89.57  Aligned_cols=37  Identities=32%  Similarity=0.543  Sum_probs=33.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ++|||+||||||+|+.+|+.+++.|.+|+|+|++...
T Consensus         2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~   38 (466)
T PRK06115          2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTL   38 (466)
T ss_pred             CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCce
Confidence            3599999999999999999999999999999975443

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.47  E-value=1.4e-06  Score=88.65  Aligned_cols=35  Identities=26%  Similarity=0.516  Sum_probs=33.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ++|||+||||||+|+.+|+.|+++|.+|+|+|+.+
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~   36 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN   36 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence            46999999999999999999999999999999875

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=98.47  E-value=2.9e-05  Score=72.83  Aligned_cols=38  Identities=24%  Similarity=0.473  Sum_probs=33.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~----g~~V~l~Er~~~~   78 (455)
                      ..+.||+|||||..|++.|+.|+++    |++|+|+||++..
T Consensus        84 ~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty  125 (509)
T KOG2853|consen   84 PYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY  125 (509)
T ss_pred             ccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence            3468999999999999999999765    7999999999765

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.46  E-value=2.6e-06  Score=83.44  Aligned_cols=40  Identities=33%  Similarity=0.460  Sum_probs=36.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST   80 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~   80 (455)
                      .+..||+|||+|.+||++|+.|.+.|++|+|+|-++....
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GG   44 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGG   44 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCc
Confidence            4578999999999999999999999999999999877643

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.45  E-value=1.2e-06  Score=88.86  Aligned_cols=63  Identities=19%  Similarity=0.162  Sum_probs=44.6

Q ss_pred             hhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecC-CceEEEEEeccCCcceeEEEEeCEEEeec
Q 012845          155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD-QCINVIASFLKEGKCTERNIQCNILIGTD  233 (455)
Q Consensus       155 ~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~~~~~~d~vV~Ad  233 (455)
                      ..+.+.|.+.+++.|+                   +|+++++|+++..++ ++..+.+... ++.   ..+.++.||.|+
T Consensus       123 ~~l~~~L~~~a~~~Gv-------------------~i~~~~~v~~l~~~~~~g~v~gv~~~-~~~---~~i~ak~VIlAt  179 (432)
T TIGR02485       123 KALTNALYSSAERLGV-------------------EIRYGIAVDRIPPEAFDGAHDGPLTT-VGT---HRITTQALVLAA  179 (432)
T ss_pred             HHHHHHHHHHHHHcCC-------------------EEEeCCEEEEEEecCCCCeEEEEEEc-CCc---EEEEcCEEEEcC
Confidence            4588889999999887                   999999999998752 3322222111 221   378899999999


Q ss_pred             CCCchhh
Q 012845          234 GAGSTVR  240 (455)
Q Consensus       234 G~~S~vr  240 (455)
                      |..+..+
T Consensus       180 GG~~~n~  186 (432)
T TIGR02485       180 GGLGANR  186 (432)
T ss_pred             CCcccCH
Confidence            9876533

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PTZ00058 glutathione reductase; Provisional

Probab=98.43  E-value=2.4e-06  Score=88.84  Aligned_cols=36  Identities=19%  Similarity=0.380  Sum_probs=33.7

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      ...+|||+||||||+|.++|+.+++.|.+|+|+||.
T Consensus        45 ~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~   80 (561)
T PTZ00058         45 PRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD   80 (561)
T ss_pred             CCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence            346899999999999999999999999999999986

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.43  E-value=5.7e-06  Score=86.91  Aligned_cols=39  Identities=31%  Similarity=0.515  Sum_probs=35.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      ..++||||||+|++|+++|+.++++|.+|+|+||.+...
T Consensus         9 ~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~g   47 (584)
T PRK12835          9 DREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFG   47 (584)
T ss_pred             cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCC
Confidence            457899999999999999999999999999999987653

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.43  E-value=4.2e-06  Score=87.39  Aligned_cols=37  Identities=27%  Similarity=0.589  Sum_probs=34.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..++||||||+| +|+++|+.+++.|.+|+|+||.+..
T Consensus        14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~   50 (564)
T PRK12845         14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYV   50 (564)
T ss_pred             CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCC
Confidence            457999999999 8999999999999999999998765

>PRK13748 putative mercuric reductase; Provisional

Probab=98.43  E-value=5.4e-06  Score=87.17  Aligned_cols=34  Identities=15%  Similarity=0.425  Sum_probs=32.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      .+|||+||||||+|+++|+.|++.|.+|.|+|+.
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~  130 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG  130 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence            4699999999999999999999999999999986

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.42  E-value=3.8e-06  Score=86.17  Aligned_cols=34  Identities=41%  Similarity=0.681  Sum_probs=32.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      .++||+||||||+|+++|+.|++.|.+|+|+|+.
T Consensus         3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~   36 (466)
T PRK07818          3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK   36 (466)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            4699999999999999999999999999999985

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=98.41  E-value=1.6e-06  Score=90.85  Aligned_cols=34  Identities=32%  Similarity=0.360  Sum_probs=31.4

Q ss_pred             CEEEECCCHHHHHHHHHHH----hCCCCEEEEcCCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLT----KLGIKCSVLEKNKAF   78 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La----~~g~~V~l~Er~~~~   78 (455)
                      ||||||||+|||++|+.++    +.|.+|+|+||....
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~   38 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE   38 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence            8999999999999999998    679999999998653

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.41  E-value=1.1e-05  Score=91.26  Aligned_cols=38  Identities=26%  Similarity=0.387  Sum_probs=35.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      +.+.||||||+|.||+++|+.+++.|.+|+|+||.+..
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~  444 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKL  444 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence            46799999999999999999999999999999998765

>PLN02507 glutathione reductase

Probab=98.40  E-value=4.9e-06  Score=85.87  Aligned_cols=35  Identities=20%  Similarity=0.346  Sum_probs=32.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      ..+|||+||||||+|+.+|..+++.|.+|.|+|+.
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~   57 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELP   57 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            34699999999999999999999999999999973

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.39  E-value=5.6e-06  Score=81.73  Aligned_cols=159  Identities=16%  Similarity=0.154  Sum_probs=90.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC----c----------------------cccc-ChhHHHHHHh
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP----Q----------------------AHFI-NNRYALVFRK   97 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~----~----------------------~~~l-~~~~~~~l~~   97 (455)
                      ||+|||+|+|||++|+.|++. ++|+|+-|.+......    .                      |.++ ...+++.+-.
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~   87 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS   87 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence            999999999999999999998 9999999987652100    0                      1111 1112222211


Q ss_pred             h-hchHHHHHhcCCCcccccceEEeecCCCCccccccCCCccccccccCCccccc---cchhhHHHHHHHHHHhcccccc
Q 012845           98 L-DGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAH---FSQYKLNKLLLKQLEKLNFKIC  173 (455)
Q Consensus        98 ~-~gl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~r~~l~~~L~~~~~~~g~~~~  173 (455)
                      - +...+.|.+.+.+.+.-..-.++....|-                .+.....+   -+-..+...|.+.+++..    
T Consensus        88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~Egg----------------HS~rRIlH~~~~TG~~I~~~L~~~v~~~p----  147 (518)
T COG0029          88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGG----------------HSRRRILHAADATGKEIMTALLKKVRNRP----  147 (518)
T ss_pred             hHHHHHHHHHHcCCCCcCCCCCceeeeeecc----------------cCCceEEEecCCccHHHHHHHHHHHhcCC----
Confidence            1 12233444445444221110011111110                00111111   233568888888888743    


Q ss_pred             cCCCcccccccccccceEEeccEEEEeeecCC-ceE-EEEEeccCCcceeEEEEeCEEEeecCCCchhhh
Q 012845          174 TSEGTEGLHNHLLQGREILMGHECVSVSATDQ-CIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRK  241 (455)
Q Consensus       174 ~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~-~~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~  241 (455)
                                    ++++..++.+.++..+++ .+. +.+.  +.+. ...++.++.||.|+|..+.+-.
T Consensus       148 --------------~I~v~e~~~a~~li~~~~~~~~Gv~~~--~~~~-~~~~~~a~~vVLATGG~g~ly~  200 (518)
T COG0029         148 --------------NITVLEGAEALDLIIEDGIGVAGVLVL--NRNG-ELGTFRAKAVVLATGGLGGLYA  200 (518)
T ss_pred             --------------CcEEEecchhhhhhhcCCceEeEEEEe--cCCC-eEEEEecCeEEEecCCCccccc
Confidence                          369999999999988777 332 3333  1222 3458899999999998876543

>PLN02976 amine oxidase

Probab=98.39  E-value=2.5e-05  Score=86.64  Aligned_cols=38  Identities=32%  Similarity=0.557  Sum_probs=34.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      ...+|+|||||++|+++|+.|++.|++|+|||+++.+.
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vG  729 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIG  729 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCC
Confidence            35899999999999999999999999999999986653

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.38  E-value=3.2e-06  Score=86.65  Aligned_cols=35  Identities=34%  Similarity=0.661  Sum_probs=32.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      .|||+||||||+|+++|+.|++.|.+|+|+|+ +..
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~   35 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYL   35 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCC
Confidence            38999999999999999999999999999998 443

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.38  E-value=8.9e-07  Score=97.22  Aligned_cols=37  Identities=32%  Similarity=0.586  Sum_probs=34.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...+|+|||||||||++|+.|++.|++|+|||+.+.+
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~  341 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDL  341 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Confidence            4679999999999999999999999999999988654

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.37  E-value=3.1e-06  Score=84.20  Aligned_cols=35  Identities=23%  Similarity=0.368  Sum_probs=32.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      .||+|||||++|+.+|+.|+++|++|+|||+++..
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~   35 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK   35 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence            37999999999999999999999999999987653

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.36  E-value=6.7e-06  Score=85.13  Aligned_cols=40  Identities=25%  Similarity=0.385  Sum_probs=36.6

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      +..++||||||||.|||.+|+.+++.|.+|.|+||....+
T Consensus         3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r   42 (562)
T COG1053           3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR   42 (562)
T ss_pred             ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence            3568999999999999999999999999999999997654

>PLN02546 glutathione reductase

Probab=98.36  E-value=6e-06  Score=85.90  Aligned_cols=33  Identities=24%  Similarity=0.348  Sum_probs=31.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEK   74 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er   74 (455)
                      .+|||+||||||+|..+|..++++|.+|.|+|+
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~  110 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCEL  110 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            468999999999999999999999999999996

>PLN03000 amine oxidase

Probab=98.34  E-value=3.2e-05  Score=82.89  Aligned_cols=38  Identities=39%  Similarity=0.528  Sum_probs=35.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      ...+|+|||||++||.+|..|++.|++|+|||+++.+.
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riG  220 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPG  220 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCC
Confidence            45899999999999999999999999999999988764

>PRK14727 putative mercuric reductase; Provisional

Probab=98.34  E-value=1.1e-05  Score=82.91  Aligned_cols=39  Identities=18%  Similarity=0.403  Sum_probs=35.1

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      .+.++||+||||||+|+++|+.|+++|.+|+|+||....
T Consensus        13 ~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~   51 (479)
T PRK14727         13 SKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVI   51 (479)
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcc
Confidence            356799999999999999999999999999999987544

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.34  E-value=3.3e-05  Score=75.51  Aligned_cols=58  Identities=22%  Similarity=0.265  Sum_probs=48.1

Q ss_pred             hhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCEEEee
Q 012845          154 QYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGT  232 (455)
Q Consensus       154 r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~A  232 (455)
                      -.++.+-+++.+++.|+                   +|+++++|.+++..++.+. +.++   +|.    ++.+|.||.|
T Consensus       172 l~~vvkni~~~l~~~G~-------------------ei~f~t~VeDi~~~~~~~~~v~~~---~g~----~i~~~~vvlA  225 (486)
T COG2509         172 LPKVVKNIREYLESLGG-------------------EIRFNTEVEDIEIEDNEVLGVKLT---KGE----EIEADYVVLA  225 (486)
T ss_pred             hHHHHHHHHHHHHhcCc-------------------EEEeeeEEEEEEecCCceEEEEcc---CCc----EEecCEEEEc
Confidence            35678889999999986                   9999999999998877543 5555   665    8999999999


Q ss_pred             cCCCc
Q 012845          233 DGAGS  237 (455)
Q Consensus       233 dG~~S  237 (455)
                      -|..+
T Consensus       226 ~Grsg  230 (486)
T COG2509         226 PGRSG  230 (486)
T ss_pred             cCcch
Confidence            99776

>TIGR02053 MerA mercuric reductase

Probab=98.33  E-value=1.1e-05  Score=82.77  Aligned_cols=33  Identities=21%  Similarity=0.497  Sum_probs=31.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      |||+||||||+|+++|+.|++.|.+|+|+||..
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~   33 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP   33 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            699999999999999999999999999999864

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.33  E-value=8e-06  Score=81.42  Aligned_cols=108  Identities=19%  Similarity=0.394  Sum_probs=79.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||++|+-+|..|++.|.+|+++|+.+.+..                   ..                     
T Consensus       141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~-------------------~~---------------------  180 (377)
T PRK04965        141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA-------------------SL---------------------  180 (377)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc-------------------hh---------------------
Confidence            35799999999999999999999999999998754310                   00                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                   + ...+.+.+.+.+++.|+                   +++.+++|+++..
T Consensus       181 -----------------------------~-~~~~~~~l~~~l~~~gV-------------------~i~~~~~v~~i~~  211 (377)
T PRK04965        181 -----------------------------M-PPEVSSRLQHRLTEMGV-------------------HLLLKSQLQGLEK  211 (377)
T ss_pred             -----------------------------C-CHHHHHHHHHHHHhCCC-------------------EEEECCeEEEEEc
Confidence                                         0 01233445666777776                   8999999999987


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc--hhhhhcCCC
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS--TVRKLVGID  246 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S--~vr~~l~~~  246 (455)
                      +++.+.+.+.   +|.    ++.+|+||.|.|...  .+.+..|..
T Consensus       212 ~~~~~~v~~~---~g~----~i~~D~vI~a~G~~p~~~l~~~~gl~  250 (377)
T PRK04965        212 TDSGIRATLD---SGR----SIEVDAVIAAAGLRPNTALARRAGLA  250 (377)
T ss_pred             cCCEEEEEEc---CCc----EEECCEEEECcCCCcchHHHHHCCCC
Confidence            7666666655   664    789999999999855  344555543

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.32  E-value=4.8e-07  Score=92.97  Aligned_cols=38  Identities=39%  Similarity=0.658  Sum_probs=35.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      +.+||||||||+.||++|..|+|+|++|+|+||+..+.
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~G   39 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVG   39 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCC
Confidence            46899999999999999999999999999999998764

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.32  E-value=8.6e-06  Score=83.47  Aligned_cols=34  Identities=38%  Similarity=0.635  Sum_probs=32.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      .+|||+||||||+|+++|..|++.|.+|+|+|+.
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~   35 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG   35 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4699999999999999999999999999999983

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.31  E-value=8.9e-07  Score=90.09  Aligned_cols=61  Identities=21%  Similarity=0.281  Sum_probs=45.3

Q ss_pred             ccccccCCCCCcccccccCCCcccccCCcccCEEEECCCHHHHHHHHHHHh--CCCCEEEEcCCCCCC
Q 012845           14 SRIKTFPYPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTK--LGIKCSVLEKNKAFS   79 (455)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~~A~~La~--~g~~V~l~Er~~~~~   79 (455)
                      ++++|..+|+...+...   ++..  .....+|+||||||||+++|..|++  .|++|+|||+.+.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~---~~~~--~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg   64 (491)
T PLN02852          2 SRLRARTWLSRALSFSN---SSSS--TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF   64 (491)
T ss_pred             ceeehhhcccccccccc---CCCC--CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence            35666667666544432   2211  1456789999999999999999987  699999999998763

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.31  E-value=1.6e-05  Score=87.73  Aligned_cols=37  Identities=24%  Similarity=0.430  Sum_probs=34.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..++||+|||||.|||++|+.+++.|.+|+|+||...
T Consensus        11 ~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         11 RLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             eeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            3568999999999999999999999999999999875

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=98.31  E-value=3.9e-06  Score=77.76  Aligned_cols=193  Identities=17%  Similarity=0.180  Sum_probs=106.3

Q ss_pred             CCCCcccccccCCCcccccCCcccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCCCC---------cccccCh
Q 012845           21 YPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTHP---------QAHFINN   89 (455)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~~~~~---------~~~~l~~   89 (455)
                      .+...+..++++.-..+.+ ..++|+||||||+.|++.|..|.-+  +.+|.|+|+......+.         .|+-..|
T Consensus        27 ~~~~~t~~R~i~gg~~s~s-~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P  105 (453)
T KOG2665|consen   27 TWNLITIKRGISGGAESIS-KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKP  105 (453)
T ss_pred             CccccceeccccCCccccc-cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCC
Confidence            3444444455544333332 5689999999999999999999877  99999999987653211         2334445


Q ss_pred             hHHHHH---HhhhchHHHHHhcCCCcccccceEEeecCC------------------CCc-cccccCCCcc----ccccc
Q 012845           90 RYALVF---RKLDGLAEEIERSQPPVDLWRKFIYCTSVT------------------GPI-LGSVDHMQPQ----DFEKV  143 (455)
Q Consensus        90 ~~~~~l---~~~~gl~~~l~~~~~~~~~~~~~~~~~~~~------------------~~~-~~~~~~~~~~----~~~~~  143 (455)
                      +++.+-   +-..=+++...+...|.+............                  |.. +...+.+...    .....
T Consensus       106 ~SLKAklCV~G~~LlY~yc~e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl  185 (453)
T KOG2665|consen  106 GSLKAKLCVEGRELLYEYCDEKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKAL  185 (453)
T ss_pred             cccchhhhhccHHHHHHHhhhcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhh
Confidence            444331   101001222223333332222221111100                  000 0000000000    01111


Q ss_pred             cCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCc---eEEEEEeccCCcce
Q 012845          144 VSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC---INVIASFLKEGKCT  220 (455)
Q Consensus       144 ~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~---~~v~~~~~~~g~~~  220 (455)
                      .+| .+..++...+...+-+..+..|.                   .++.+-++..+.+.++.   .-+++.   ++.. 
T Consensus       186 ~sP-htGIvD~~~v~ls~~edF~~~gg-------------------~i~~n~~l~g~~~n~~~~~~Ypivv~---ngk~-  241 (453)
T KOG2665|consen  186 LSP-HTGIVDWGSVTLSFGEDFDFMGG-------------------RIYTNFRLQGIAQNKEATFSYPIVVL---NGKG-  241 (453)
T ss_pred             cCC-CcceeehHHHHHHHHHHHHHhcc-------------------cccccceeccchhccCCCCCCceEEe---cCcc-
Confidence            222 24446666777777777888776                   89999999999876542   334555   5653 


Q ss_pred             eEEEEeCEEEeecCCCchh
Q 012845          221 ERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       221 ~~~~~~d~vV~AdG~~S~v  239 (455)
                       +++++..+|.|.|-.|..
T Consensus       242 -ee~r~~~~vtc~gl~sdr  259 (453)
T KOG2665|consen  242 -EEKRTKNVVTCAGLQSDR  259 (453)
T ss_pred             -ceeEEeEEEEeccccHhH
Confidence             378999999999988763

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=98.30  E-value=3.1e-06  Score=77.49  Aligned_cols=175  Identities=18%  Similarity=0.265  Sum_probs=92.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCC------CCEEEEcCCCCCCC-CC-cccccC----hhHHHHHHhhh-chHHHHHhc
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLG------IKCSVLEKNKAFST-HP-QAHFIN----NRYALVFRKLD-GLAEEIERS  108 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g------~~V~l~Er~~~~~~-~~-~~~~l~----~~~~~~l~~~~-gl~~~l~~~  108 (455)
                      ...+|+|||||+.|.++|++|++++      +.|+|||...-... .+ .+..|.    +.-..-|..+- .|.++|.+.
T Consensus         9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsde   88 (380)
T KOG2852|consen    9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDE   88 (380)
T ss_pred             CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHh
Confidence            3478999999999999999999997      78999998864421 11 111121    11111111110 233444333


Q ss_pred             CCCcccccc-----eEEeecC----CCCccccccCCCcc---ccccccCCccccccchhhHHHHHHHHHHhcccccccCC
Q 012845          109 QPPVDLWRK-----FIYCTSV----TGPILGSVDHMQPQ---DFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSE  176 (455)
Q Consensus       109 ~~~~~~~~~-----~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~  176 (455)
                      ......|..     +....+.    .+..-...+|....   ............+++...+.+.++..+++.|.      
T Consensus        89 ydGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~------  162 (380)
T KOG2852|consen   89 YDGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGG------  162 (380)
T ss_pred             hcCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcC------
Confidence            333333322     1111111    11111112222221   11112223345678888999999999998774      


Q ss_pred             CcccccccccccceEEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          177 GTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       177 ~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                                  +++.+|+ |+++..+..++. +...   .....-+..+.+.+|.+.|.|+.
T Consensus       163 ------------V~lv~Gk-v~ev~dEk~r~n~v~~a---e~~~ti~~~d~~~ivvsaGPWTs  209 (380)
T KOG2852|consen  163 ------------VKLVFGK-VKEVSDEKHRINSVPKA---EAEDTIIKADVHKIVVSAGPWTS  209 (380)
T ss_pred             ------------eEEEEee-eEEeecccccccccchh---hhcCceEEeeeeEEEEecCCCch
Confidence                        4777764 555543333222 1111   11111235678999999999985

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.28  E-value=3.7e-06  Score=85.79  Aligned_cols=34  Identities=21%  Similarity=0.443  Sum_probs=30.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAF   78 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g--~~V~l~Er~~~~   78 (455)
                      +|+|||||++|+++|..|++.+  .+|+|||+.+..
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~   37 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV   37 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence            6999999999999999999985  589999998754

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.27  E-value=1.9e-05  Score=80.91  Aligned_cols=32  Identities=22%  Similarity=0.590  Sum_probs=30.7

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +|+||||||+|+++|..|++.|.+|+|+||.+
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~   33 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD   33 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence            79999999999999999999999999999875

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.26  E-value=6.6e-06  Score=83.66  Aligned_cols=34  Identities=21%  Similarity=0.379  Sum_probs=31.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~   78 (455)
                      +|||||||++|+.+|..|++.  +.+|+|||+.+..
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~   38 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM   38 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence            799999999999999999987  6889999998764

>PRK12831 putative oxidoreductase; Provisional

Probab=98.26  E-value=1.6e-06  Score=88.52  Aligned_cols=38  Identities=26%  Similarity=0.421  Sum_probs=34.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ....||+||||||||+++|+.|++.|++|+|||+.+.+
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~  175 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEP  175 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence            35679999999999999999999999999999987654

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.23  E-value=4.9e-06  Score=90.60  Aligned_cols=37  Identities=30%  Similarity=0.568  Sum_probs=34.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...+|+||||||||+++|+.|++.|++|+|||+.+.+
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~  574 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENA  574 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence            4579999999999999999999999999999988764

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.22  E-value=7.6e-06  Score=82.13  Aligned_cols=37  Identities=16%  Similarity=0.371  Sum_probs=32.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~~~   78 (455)
                      ...+|+|||||+||+.+|..|++.|.  +|+|+++.+..
T Consensus         2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~   40 (396)
T PRK09754          2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL   40 (396)
T ss_pred             CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence            34589999999999999999999987  69999987654

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=5.9e-06  Score=72.90  Aligned_cols=119  Identities=17%  Similarity=0.230  Sum_probs=77.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      ..+-+|+|||+|||+-.+|++++++.++.+|||-...-. ...|..|+.-  .-.+.+||+++                 
T Consensus         6 ~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~-i~pGGQLtTT--T~veNfPGFPd-----------------   65 (322)
T KOG0404|consen    6 THNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANG-IAPGGQLTTT--TDVENFPGFPD-----------------   65 (322)
T ss_pred             eeeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccC-cCCCceeeee--eccccCCCCCc-----------------
Confidence            445689999999999999999999999999999553321 1112222110  00111122211                 


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                                                    .+.-.+|.+-|++..++.|.                   +| +...|.++
T Consensus        66 ------------------------------gi~G~~l~d~mrkqs~r~Gt-------------------~i-~tEtVskv   95 (322)
T KOG0404|consen   66 ------------------------------GITGPELMDKMRKQSERFGT-------------------EI-ITETVSKV   95 (322)
T ss_pred             ------------------------------ccccHHHHHHHHHHHHhhcc-------------------ee-eeeehhhc
Confidence                                          23445788889999999885                   33 55567777


Q ss_pred             eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                      +.......+.+.   .+     .+.+|.||.|+|+..
T Consensus        96 ~~sskpF~l~td---~~-----~v~~~avI~atGAsA  124 (322)
T KOG0404|consen   96 DLSSKPFKLWTD---AR-----PVTADAVILATGASA  124 (322)
T ss_pred             cccCCCeEEEec---CC-----ceeeeeEEEecccce
Confidence            776666655432   22     789999999999643

>PRK07208 hypothetical protein; Provisional

Probab=98.20  E-value=1.6e-06  Score=89.28  Aligned_cols=40  Identities=35%  Similarity=0.503  Sum_probs=36.5

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      |+...||+|||||++||++|+.|+++|++|+|+|+++...
T Consensus         1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~G   40 (479)
T PRK07208          1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVG   40 (479)
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            3567899999999999999999999999999999988764

>TIGR02462 pyranose_ox pyranose oxidase

Probab=98.20  E-value=5.5e-05  Score=77.96  Aligned_cols=36  Identities=33%  Similarity=0.528  Sum_probs=34.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      +||+|||+||+|+.+|..|+++|++|+|||+.....
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~   36 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS   36 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence            699999999999999999999999999999998875

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.20  E-value=2.6e-05  Score=78.63  Aligned_cols=104  Identities=27%  Similarity=0.407  Sum_probs=81.0

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      ..+..++|||||+.|+=+|..+++.|.+|+|+|+.+.+-                   |+.                   
T Consensus       171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL-------------------p~~-------------------  212 (454)
T COG1249         171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL-------------------PGE-------------------  212 (454)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------CcC-------------------
Confidence            346689999999999999999999999999999987651                   111                   


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                                                       -.++.+.+.+.+++.|+                   .++.+++++.+
T Consensus       213 ---------------------------------D~ei~~~~~~~l~~~gv-------------------~i~~~~~v~~~  240 (454)
T COG1249         213 ---------------------------------DPEISKELTKQLEKGGV-------------------KILLNTKVTAV  240 (454)
T ss_pred             ---------------------------------CHHHHHHHHHHHHhCCe-------------------EEEccceEEEE
Confidence                                             12455567777777555                   89999999999


Q ss_pred             eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      +..++++.+.+.   +|...  ++++|.|+.|.|+.-.+
T Consensus       241 ~~~~~~v~v~~~---~g~~~--~~~ad~vLvAiGR~Pn~  274 (454)
T COG1249         241 EKKDDGVLVTLE---DGEGG--TIEADAVLVAIGRKPNT  274 (454)
T ss_pred             EecCCeEEEEEe---cCCCC--EEEeeEEEEccCCccCC
Confidence            987777777776   55422  67899999999975543

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=98.20  E-value=7.2e-06  Score=78.01  Aligned_cols=66  Identities=27%  Similarity=0.452  Sum_probs=47.1

Q ss_pred             cccccccccccccCCCCCc---ccccccCCCcccccCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845            7 TRGLNCFSRIKTFPYPYGY---TQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      .|-++||++-...+.....   .+.+.++.+      ...+||+|||+||+|-.+|+..++.|++...+|++...
T Consensus         6 rr~~~~~~~~~~~~~~~~~~~~~~~r~fa~~------~~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~L   74 (506)
T KOG1335|consen    6 RREASLFSTSNQLPMGANRFIFSSKRSFASS------ANDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTL   74 (506)
T ss_pred             hheeeeeeccCcCccchhhhhhhhhhhhhcc------CccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCcc
Confidence            4667777775444432221   122222222      25799999999999999999999999999999998765

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.19  E-value=7.5e-06  Score=80.88  Aligned_cols=43  Identities=26%  Similarity=0.282  Sum_probs=34.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC--C-CCEEEEcCCCCCCCCCcccccCh
Q 012845           44 VPVLIVGAGPVGLVLSILLTKL--G-IKCSVLEKNKAFSTHPQAHFINN   89 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~--g-~~V~l~Er~~~~~~~~~~~~l~~   89 (455)
                      ++|+|||||++|+.+|.+|.+.  . ..|.|||+.+..   ++|...++
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~---G~GiaYs~   47 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF---GQGIAYST   47 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc---CCCccCCC
Confidence            6899999999999999999887  1 239999998776   45544443

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.18  E-value=2.3e-05  Score=87.33  Aligned_cols=37  Identities=30%  Similarity=0.559  Sum_probs=34.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..+||+||||||||+++|+.|++.|++|+|+|+.+.+
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~  198 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEA  198 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            4689999999999999999999999999999998765

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.18  E-value=3.5e-05  Score=79.14  Aligned_cols=34  Identities=21%  Similarity=0.361  Sum_probs=32.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKN   75 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~-g~~V~l~Er~   75 (455)
                      ++|||+||||||+|..+|+.+++. |.+|.|+|+.
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~   36 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ   36 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence            569999999999999999999997 9999999985

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.18  E-value=2.2e-05  Score=80.47  Aligned_cols=32  Identities=28%  Similarity=0.673  Sum_probs=30.7

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ||+|||||++|+.+|..|+++|.+|+|+||..
T Consensus         3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~   34 (466)
T PRK07845          3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG   34 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence            79999999999999999999999999999864

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.18  E-value=1.8e-05  Score=79.46  Aligned_cols=99  Identities=22%  Similarity=0.339  Sum_probs=74.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.                ...                        
T Consensus       144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l----------------~~~------------------------  183 (396)
T PRK09754        144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVM----------------GRN------------------------  183 (396)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcch----------------hhh------------------------
Confidence            3579999999999999999999999999999876431                000                        


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                    ....+.+.+.+.+++.|+                   +++.+++|++++.
T Consensus       184 ------------------------------~~~~~~~~l~~~l~~~GV-------------------~i~~~~~V~~i~~  214 (396)
T PRK09754        184 ------------------------------APPPVQRYLLQRHQQAGV-------------------RILLNNAIEHVVD  214 (396)
T ss_pred             ------------------------------cCHHHHHHHHHHHHHCCC-------------------EEEeCCeeEEEEc
Confidence                                          011334456666677786                   9999999999976


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                       ++.+.+.+.   +|+    ++.+|+||.|.|....
T Consensus       215 -~~~~~v~l~---~g~----~i~aD~Vv~a~G~~pn  242 (396)
T PRK09754        215 -GEKVELTLQ---SGE----TLQADVVIYGIGISAN  242 (396)
T ss_pred             -CCEEEEEEC---CCC----EEECCEEEECCCCChh
Confidence             444555554   665    7899999999998654

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.17  E-value=3.1e-05  Score=81.90  Aligned_cols=34  Identities=24%  Similarity=0.303  Sum_probs=32.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      .+|||+|||+||+|..+|+.+++.|.+|+|+|+.
T Consensus       115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~  148 (659)
T PTZ00153        115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD  148 (659)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            3789999999999999999999999999999974

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.16  E-value=2.4e-05  Score=80.22  Aligned_cols=103  Identities=19%  Similarity=0.334  Sum_probs=77.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+...                   |.+                     
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------~~~---------------------  209 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL-------------------PGE---------------------  209 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC-------------------CCC---------------------
Confidence            4689999999999999999999999999999875421                   000                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                     ...+.+.+.+.+++.|+                   +++.+++|.+++.
T Consensus       210 -------------------------------~~~~~~~~~~~l~~~gi-------------------~i~~~~~v~~i~~  239 (461)
T TIGR01350       210 -------------------------------DAEVSKVVAKALKKKGV-------------------KILTNTKVTAVEK  239 (461)
T ss_pred             -------------------------------CHHHHHHHHHHHHHcCC-------------------EEEeCCEEEEEEE
Confidence                                           01233445666777776                   9999999999987


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhh
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVR  240 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr  240 (455)
                      +++.+.+...   +|.  ..++.+|.||.|.|......
T Consensus       240 ~~~~v~v~~~---~g~--~~~i~~D~vi~a~G~~p~~~  272 (461)
T TIGR01350       240 NDDQVVYENK---GGE--TETLTGEKVLVAVGRKPNTE  272 (461)
T ss_pred             eCCEEEEEEe---CCc--EEEEEeCEEEEecCCcccCC
Confidence            7666665544   442  23689999999999877544

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.16  E-value=2.2e-05  Score=79.50  Aligned_cols=38  Identities=16%  Similarity=0.175  Sum_probs=33.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      +.+.+|||||||.||+.+|..|.+.+.+|+|||+++..
T Consensus         8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~   45 (424)
T PTZ00318          8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM   45 (424)
T ss_pred             CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence            34679999999999999999998778999999987643

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.14  E-value=2.9e-05  Score=79.86  Aligned_cols=33  Identities=21%  Similarity=0.336  Sum_probs=31.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      +|||+||||||+|+.+|+.+++.|.+|.|+|+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV   34 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            589999999999999999999999999999975

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.12  E-value=3e-05  Score=79.47  Aligned_cols=100  Identities=21%  Similarity=0.327  Sum_probs=76.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.                   +.+                     
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------~~~---------------------  214 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL-------------------SFL---------------------  214 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------CcC---------------------
Confidence            4689999999999999999999999999999875431                   000                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                     -.++.+.|.+.+++.|+                   +++.+++|++++.
T Consensus       215 -------------------------------d~~~~~~l~~~l~~~gI-------------------~v~~~~~v~~i~~  244 (461)
T PRK05249        215 -------------------------------DDEISDALSYHLRDSGV-------------------TIRHNEEVEKVEG  244 (461)
T ss_pred             -------------------------------CHHHHHHHHHHHHHcCC-------------------EEEECCEEEEEEE
Confidence                                           01233446666667776                   9999999999987


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      +++++.+++.   +|.    ++.+|.||.|.|.....
T Consensus       245 ~~~~~~v~~~---~g~----~i~~D~vi~a~G~~p~~  274 (461)
T PRK05249        245 GDDGVIVHLK---SGK----KIKADCLLYANGRTGNT  274 (461)
T ss_pred             eCCeEEEEEC---CCC----EEEeCEEEEeecCCccc
Confidence            6666666544   554    68999999999987654

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.11  E-value=3.1e-06  Score=86.40  Aligned_cols=40  Identities=28%  Similarity=0.408  Sum_probs=36.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST   80 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~   80 (455)
                      .++.+|+|||||+|||+||..|.+.|++|+|+|.++..+.
T Consensus        13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG   52 (501)
T KOG0029|consen   13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG   52 (501)
T ss_pred             cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence            5678999999999999999999999999999999987653

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.10  E-value=3.5e-05  Score=79.00  Aligned_cols=103  Identities=19%  Similarity=0.356  Sum_probs=76.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.                   |.+                     
T Consensus       172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------~~~---------------------  211 (462)
T PRK06416        172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL-------------------PGE---------------------  211 (462)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC-------------------CcC---------------------
Confidence            4689999999999999999999999999999876431                   000                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                     ...+.+.+.+.+++.|+                   .++.+++|++++.
T Consensus       212 -------------------------------~~~~~~~l~~~l~~~gV-------------------~i~~~~~V~~i~~  241 (462)
T PRK06416        212 -------------------------------DKEISKLAERALKKRGI-------------------KIKTGAKAKKVEQ  241 (462)
T ss_pred             -------------------------------CHHHHHHHHHHHHHcCC-------------------EEEeCCEEEEEEE
Confidence                                           01233445566667776                   9999999999987


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      +++.+.+.+.   ++ +..+.+.+|.||.|.|.....
T Consensus       242 ~~~~v~v~~~---~g-g~~~~i~~D~vi~a~G~~p~~  274 (462)
T PRK06416        242 TDDGVTVTLE---DG-GKEETLEADYVLVAVGRRPNT  274 (462)
T ss_pred             eCCEEEEEEE---eC-CeeEEEEeCEEEEeeCCccCC
Confidence            7666666554   33 122378999999999976543

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.09  E-value=3.2e-06  Score=84.29  Aligned_cols=39  Identities=26%  Similarity=0.382  Sum_probs=35.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP   82 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~   82 (455)
                      .+|+|+|||+|||++|+.|+++|++|+|||+++.+..+.
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~   39 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKV   39 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCcee
Confidence            369999999999999999999999999999999876533

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.08  E-value=1.6e-05  Score=78.88  Aligned_cols=34  Identities=9%  Similarity=0.295  Sum_probs=29.4

Q ss_pred             CEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKAF   78 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~---g~~V~l~Er~~~~   78 (455)
                      +|||||||+||+.+|..|.++   +.+|+|||+++..
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~   37 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT   37 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence            499999999999999999754   6899999987653

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.08  E-value=3.3e-05  Score=77.02  Aligned_cols=35  Identities=17%  Similarity=0.216  Sum_probs=30.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~   78 (455)
                      .+|||||||+||+.+|..|.+.  ..+|+||++.+..
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~   39 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD   39 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC
Confidence            4899999999999999999886  4679999987643

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.07  E-value=4.8e-05  Score=78.22  Aligned_cols=104  Identities=20%  Similarity=0.323  Sum_probs=76.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+.+.+                   ..                     
T Consensus       183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------~~---------------------  222 (475)
T PRK06327        183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA-------------------AA---------------------  222 (475)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC-------------------cC---------------------
Confidence            46899999999999999999999999999998754310                   00                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                    + ..+.+.+.+.+++.|+                   +++.+++|++++.
T Consensus       223 ------------------------------d-~~~~~~~~~~l~~~gi-------------------~i~~~~~v~~i~~  252 (475)
T PRK06327        223 ------------------------------D-EQVAKEAAKAFTKQGL-------------------DIHLGVKIGEIKT  252 (475)
T ss_pred             ------------------------------C-HHHHHHHHHHHHHcCc-------------------EEEeCcEEEEEEE
Confidence                                          0 1233445555666776                   9999999999987


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      +++.+.+.+.   ++++.+..+.+|.||.|.|.....
T Consensus       253 ~~~~v~v~~~---~~~g~~~~i~~D~vl~a~G~~p~~  286 (475)
T PRK06327        253 GGKGVSVAYT---DADGEAQTLEVDKLIVSIGRVPNT  286 (475)
T ss_pred             cCCEEEEEEE---eCCCceeEEEcCEEEEccCCccCC
Confidence            7666666655   332333478999999999977654

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.07  E-value=5.6e-05  Score=76.27  Aligned_cols=36  Identities=36%  Similarity=0.657  Sum_probs=34.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +..||++|||+||+|..+|+.+++.|.+|.|+|+..
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~   37 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE   37 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence            568999999999999999999999999999999986

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.06  E-value=2e-05  Score=73.42  Aligned_cols=35  Identities=31%  Similarity=0.450  Sum_probs=31.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      .|+|||+|+|||+++..+-..|-.|+|+|+.....
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~G   45 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIG   45 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcC
Confidence            59999999999999999998877799999998764

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.04  E-value=6.2e-05  Score=77.20  Aligned_cols=106  Identities=20%  Similarity=0.312  Sum_probs=76.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEe
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~  121 (455)
                      ...+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.                   +++                    
T Consensus       173 ~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il-------------------~~~--------------------  213 (466)
T PRK06115        173 VPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-------------------PGT--------------------  213 (466)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-------------------CCC--------------------
Confidence            34689999999999999999999999999999865431                   010                    


Q ss_pred             ecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEee
Q 012845          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (455)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~  201 (455)
                                                     + ..+.+.+.+.+++.|+                   +++.+++|.+++
T Consensus       214 -------------------------------d-~~~~~~l~~~l~~~gV-------------------~i~~~~~V~~i~  242 (466)
T PRK06115        214 -------------------------------D-TETAKTLQKALTKQGM-------------------KFKLGSKVTGAT  242 (466)
T ss_pred             -------------------------------C-HHHHHHHHHHHHhcCC-------------------EEEECcEEEEEE
Confidence                                           0 1233445666677776                   999999999998


Q ss_pred             ecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       202 ~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      .+++++.+.+...++|+  ...+.+|.||.|.|.....
T Consensus       243 ~~~~~v~v~~~~~~~g~--~~~i~~D~vi~a~G~~pn~  278 (466)
T PRK06115        243 AGADGVSLTLEPAAGGA--AETLQADYVLVAIGRRPYT  278 (466)
T ss_pred             EcCCeEEEEEEEcCCCc--eeEEEeCEEEEccCCcccc
Confidence            76666655554222232  2378999999999976543

>TIGR02053 MerA mercuric reductase

Probab=98.04  E-value=6e-05  Score=77.33  Aligned_cols=103  Identities=14%  Similarity=0.282  Sum_probs=74.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||.+|+-+|..|++.|.+|+|+|+.+.+.                   |..                     
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------~~~---------------------  205 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL-------------------PRE---------------------  205 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC-------------------Ccc---------------------
Confidence            4689999999999999999999999999999875431                   000                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                     ...+...+.+.+++.|+                   +++.+++|++++.
T Consensus       206 -------------------------------d~~~~~~l~~~l~~~gV-------------------~i~~~~~V~~i~~  235 (463)
T TIGR02053       206 -------------------------------EPEISAAVEEALAEEGI-------------------EVVTSAQVKAVSV  235 (463)
T ss_pred             -------------------------------CHHHHHHHHHHHHHcCC-------------------EEEcCcEEEEEEE
Confidence                                           01233345556667776                   9999999999987


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      +++...+.+..  ++.  ..++.+|.||.|.|.....
T Consensus       236 ~~~~~~v~~~~--~~~--~~~i~~D~ViiA~G~~p~~  268 (463)
T TIGR02053       236 RGGGKIITVEK--PGG--QGEVEADELLVATGRRPNT  268 (463)
T ss_pred             cCCEEEEEEEe--CCC--ceEEEeCEEEEeECCCcCC
Confidence            65555555441  121  1378999999999976543

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.04  E-value=6.6e-05  Score=76.42  Aligned_cols=98  Identities=20%  Similarity=0.299  Sum_probs=72.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.                   +..                     
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------~~~---------------------  196 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL-------------------PRE---------------------  196 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC-------------------CCC---------------------
Confidence            4589999999999999999999999999999876431                   000                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                     ...+.+.+.+.+++.|+                   +++.+++|++++.
T Consensus       197 -------------------------------~~~~~~~~~~~l~~~GI-------------------~i~~~~~V~~i~~  226 (438)
T PRK07251        197 -------------------------------EPSVAALAKQYMEEDGI-------------------TFLLNAHTTEVKN  226 (438)
T ss_pred             -------------------------------CHHHHHHHHHHHHHcCC-------------------EEEcCCEEEEEEe
Confidence                                           01233345566677776                   9999999999987


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      +++.+.+. .   ++.    ++.+|.||.|.|....
T Consensus       227 ~~~~v~v~-~---~g~----~i~~D~viva~G~~p~  254 (438)
T PRK07251        227 DGDQVLVV-T---EDE----TYRFDALLYATGRKPN  254 (438)
T ss_pred             cCCEEEEE-E---CCe----EEEcCEEEEeeCCCCC
Confidence            65554443 2   343    7899999999997654

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.02  E-value=7.1e-05  Score=76.84  Aligned_cols=104  Identities=23%  Similarity=0.393  Sum_probs=75.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+.+-                   |..                     
T Consensus       172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-------------------~~~---------------------  211 (466)
T PRK07818        172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL-------------------PNE---------------------  211 (466)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------Ccc---------------------
Confidence            3589999999999999999999999999999765431                   000                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                     -..+.+.+.+.+++.|+                   +++.+++|++++.
T Consensus       212 -------------------------------d~~~~~~l~~~l~~~gV-------------------~i~~~~~v~~i~~  241 (466)
T PRK07818        212 -------------------------------DAEVSKEIAKQYKKLGV-------------------KILTGTKVESIDD  241 (466)
T ss_pred             -------------------------------CHHHHHHHHHHHHHCCC-------------------EEEECCEEEEEEE
Confidence                                           01233446666777776                   9999999999987


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      +++.+.+.+.. .+|+  ..++.+|.||.|.|.....
T Consensus       242 ~~~~~~v~~~~-~~g~--~~~i~~D~vi~a~G~~pn~  275 (466)
T PRK07818        242 NGSKVTVTVSK-KDGK--AQELEADKVLQAIGFAPRV  275 (466)
T ss_pred             eCCeEEEEEEe-cCCC--eEEEEeCEEEECcCcccCC
Confidence            65555554431 1332  2378999999999976654

>PRK06370 mercuric reductase; Validated

Probab=98.02  E-value=6.8e-05  Score=76.91  Aligned_cols=103  Identities=17%  Similarity=0.283  Sum_probs=74.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.                   +..                     
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-------------------~~~---------------------  210 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL-------------------PRE---------------------  210 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC-------------------ccc---------------------
Confidence            4689999999999999999999999999999876431                   000                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                     -..+.+.+.+.+++.|+                   +++.+++|++++.
T Consensus       211 -------------------------------~~~~~~~l~~~l~~~GV-------------------~i~~~~~V~~i~~  240 (463)
T PRK06370        211 -------------------------------DEDVAAAVREILEREGI-------------------DVRLNAECIRVER  240 (463)
T ss_pred             -------------------------------CHHHHHHHHHHHHhCCC-------------------EEEeCCEEEEEEE
Confidence                                           01233445566677776                   9999999999987


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      +++...+.+...+++    .++.+|.||.|.|.....
T Consensus       241 ~~~~~~v~~~~~~~~----~~i~~D~Vi~A~G~~pn~  273 (463)
T PRK06370        241 DGDGIAVGLDCNGGA----PEITGSHILVAVGRVPNT  273 (463)
T ss_pred             cCCEEEEEEEeCCCc----eEEEeCEEEECcCCCcCC
Confidence            666555544321122    368999999999976543

>TIGR02730 carot_isom carotene isomerase

Probab=98.02  E-value=5.4e-06  Score=85.68  Aligned_cols=36  Identities=31%  Similarity=0.381  Sum_probs=34.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      +||+|||||++||++|..|+++|++|+|+||+..+.
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~G   36 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPG   36 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCC
Confidence            699999999999999999999999999999998764

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.01  E-value=1.7e-05  Score=79.12  Aligned_cols=150  Identities=16%  Similarity=0.240  Sum_probs=82.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC-CCCCcccccCh----hHHHHHHhhhchHHHHHhcCCCcccc
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-STHPQAHFINN----RYALVFRKLDGLAEEIERSQPPVDLW  115 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~-~~~~~~~~l~~----~~~~~l~~~~gl~~~l~~~~~~~~~~  115 (455)
                      +..|||+|||||-||+-+|++.+|.|.++.|+--+..- ..-.|.-.|..    ..++-++.+.|+--...+...     
T Consensus         2 ~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~-----   76 (621)
T COG0445           2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAG-----   76 (621)
T ss_pred             CCCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcC-----
Confidence            34699999999999999999999999999988876432 11111111110    011222233344333322111     


Q ss_pred             cceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEecc
Q 012845          116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH  195 (455)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~  195 (455)
                      -++.......|..+..                .-..++|....+.+.+.++....                  ..+ +..
T Consensus        77 IQ~r~LN~sKGPAVra----------------~RaQaDk~~Y~~~mk~~le~~~N------------------L~l-~q~  121 (621)
T COG0445          77 IQFRMLNSSKGPAVRA----------------PRAQADKWLYRRAMKNELENQPN------------------LHL-LQG  121 (621)
T ss_pred             CchhhccCCCcchhcc----------------hhhhhhHHHHHHHHHHHHhcCCC------------------cee-hHh
Confidence            0111111112221111                11345566666666666665442                  233 455


Q ss_pred             EEEEeeecCCc-eE-EEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          196 ECVSVSATDQC-IN-VIASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       196 ~v~~i~~~~~~-~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                      .|+++..+++. +. |.+.   +|.    .+.|+.||.++|.+-
T Consensus       122 ~v~dli~e~~~~v~GV~t~---~G~----~~~a~aVVlTTGTFL  158 (621)
T COG0445         122 EVEDLIVEEGQRVVGVVTA---DGP----EFHAKAVVLTTGTFL  158 (621)
T ss_pred             hhHHHhhcCCCeEEEEEeC---CCC----eeecCEEEEeecccc
Confidence            66777665543 44 5555   776    889999999999764

>PRK07846 mycothione reductase; Reviewed

Probab=98.00  E-value=6.6e-05  Score=76.60  Aligned_cols=32  Identities=19%  Similarity=0.295  Sum_probs=27.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +|||+||||||+|..+|..  +.|.+|.|+|+..
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~   32 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGT   32 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence            4899999999999988866  4699999999853

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.00  E-value=9e-06  Score=83.17  Aligned_cols=59  Identities=22%  Similarity=0.275  Sum_probs=44.8

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC------------cc----cccChhHHHHHHhhhchHHH
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP------------QA----HFINNRYALVFRKLDGLAEE  104 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~------------~~----~~l~~~~~~~l~~~~gl~~~  104 (455)
                      +|+|||||++||++|+.|+++|++|+|||+.+.+..+.            .|    ....++.+++++++ |+.+.
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~l-g~~~~   75 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKEL-NIEDR   75 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHc-CCccc
Confidence            59999999999999999999999999999997654211            11    11136677888888 77543

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK06116 glutathione reductase; Validated

Probab=97.99  E-value=7.2e-05  Score=76.44  Aligned_cols=100  Identities=19%  Similarity=0.301  Sum_probs=75.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||++|+-+|..|++.|.+|+++++.+.+.                .   .+                     
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l----------------~---~~---------------------  206 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL----------------R---GF---------------------  206 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc----------------c---cc---------------------
Confidence            4689999999999999999999999999999875431                0   00                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                     -..+.+.+.+.+++.|+                   +++.+++|.+++.
T Consensus       207 -------------------------------~~~~~~~l~~~L~~~GV-------------------~i~~~~~V~~i~~  236 (450)
T PRK06116        207 -------------------------------DPDIRETLVEEMEKKGI-------------------RLHTNAVPKAVEK  236 (450)
T ss_pred             -------------------------------CHHHHHHHHHHHHHCCc-------------------EEECCCEEEEEEE
Confidence                                           01233445566677776                   9999999999987


Q ss_pred             cCCc-eEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          203 TDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       203 ~~~~-~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      ++++ +.+.+.   +|.    ++.+|.||.|.|.....
T Consensus       237 ~~~g~~~v~~~---~g~----~i~~D~Vv~a~G~~p~~  267 (450)
T PRK06116        237 NADGSLTLTLE---DGE----TLTVDCLIWAIGREPNT  267 (450)
T ss_pred             cCCceEEEEEc---CCc----EEEeCEEEEeeCCCcCC
Confidence            6554 555554   554    78999999999976544

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=97.98  E-value=7e-06  Score=82.84  Aligned_cols=44  Identities=23%  Similarity=0.326  Sum_probs=38.9

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCc
Q 012845           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQ   83 (455)
Q Consensus        40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~   83 (455)
                      |+.++||+|||+|++|+.+|..|++.|.+|+++||++..+...+
T Consensus         1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~a   44 (443)
T PTZ00363          1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESA   44 (443)
T ss_pred             CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccc
Confidence            35689999999999999999999999999999999987754333

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.98  E-value=8.8e-05  Score=75.94  Aligned_cols=101  Identities=20%  Similarity=0.339  Sum_probs=73.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.                   ++.                     
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll-------------------~~~---------------------  209 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL-------------------PGE---------------------  209 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------ccc---------------------
Confidence            4689999999999999999999999999999875431                   000                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                     -.++.+.+.+.+++.|+                   +++.+++|++++.
T Consensus       210 -------------------------------d~e~~~~l~~~L~~~GI-------------------~i~~~~~V~~i~~  239 (458)
T PRK06912        210 -------------------------------DEDIAHILREKLENDGV-------------------KIFTGAALKGLNS  239 (458)
T ss_pred             -------------------------------cHHHHHHHHHHHHHCCC-------------------EEEECCEEEEEEE
Confidence                                           01234445666777776                   9999999999986


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      ++..+.+. .   ++.  ..++.+|+||.|.|....+
T Consensus       240 ~~~~v~~~-~---~g~--~~~i~~D~vivA~G~~p~~  270 (458)
T PRK06912        240 YKKQALFE-Y---EGS--IQEVNAEFVLVSVGRKPRV  270 (458)
T ss_pred             cCCEEEEE-E---CCc--eEEEEeCEEEEecCCccCC
Confidence            55543332 1   332  2368999999999977654

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.97  E-value=6.9e-05  Score=76.96  Aligned_cols=104  Identities=19%  Similarity=0.315  Sum_probs=74.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.                   |.+.                    
T Consensus       174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il-------------------~~~d--------------------  214 (471)
T PRK06467        174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI-------------------PAAD--------------------  214 (471)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC-------------------CcCC--------------------
Confidence            3689999999999999999999999999999876531                   0000                    


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                      ..+.+.+.+.+++. +                   .++.+++|+.++.
T Consensus       215 --------------------------------~~~~~~~~~~l~~~-v-------------------~i~~~~~v~~i~~  242 (471)
T PRK06467        215 --------------------------------KDIVKVFTKRIKKQ-F-------------------NIMLETKVTAVEA  242 (471)
T ss_pred             --------------------------------HHHHHHHHHHHhhc-e-------------------EEEcCCEEEEEEE
Confidence                                            12233344444444 4                   8889999999987


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhh
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVR  240 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr  240 (455)
                      .++.+.+.+.   ++++...++.+|.||.|.|......
T Consensus       243 ~~~~~~v~~~---~~~~~~~~i~~D~vi~a~G~~pn~~  277 (471)
T PRK06467        243 KEDGIYVTME---GKKAPAEPQRYDAVLVAVGRVPNGK  277 (471)
T ss_pred             cCCEEEEEEE---eCCCcceEEEeCEEEEeecccccCC
Confidence            6666666554   3322224689999999999876543

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=97.97  E-value=7.8e-06  Score=84.53  Aligned_cols=36  Identities=33%  Similarity=0.578  Sum_probs=33.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      .||+|||||++||++|..|+++|++|+|+||++.+.
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~G   37 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPG   37 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            589999999999999999999999999999998764

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=1.4e-05  Score=75.18  Aligned_cols=112  Identities=21%  Similarity=0.362  Sum_probs=75.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEE-cCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVL-EKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~-Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~  119 (455)
                      ...|||+||||||||.++|++.+|.|++.-|+ ||-       .|        +.|+.+ ++...+   +          
T Consensus       209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerf-------GG--------QvldT~-~IENfI---s----------  259 (520)
T COG3634         209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERF-------GG--------QVLDTM-GIENFI---S----------  259 (520)
T ss_pred             cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhh-------CC--------eecccc-chhhee---c----------
Confidence            34699999999999999999999999986433 321       11        223333 332100   0          


Q ss_pred             EeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEE
Q 012845          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (455)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~  199 (455)
                                                   .-...-.+|...|.++++++.+                   .+..-.+.++
T Consensus       260 -----------------------------v~~teGpkl~~ale~Hv~~Y~v-------------------Dimn~qra~~  291 (520)
T COG3634         260 -----------------------------VPETEGPKLAAALEAHVKQYDV-------------------DVMNLQRASK  291 (520)
T ss_pred             -----------------------------cccccchHHHHHHHHHHhhcCc-------------------hhhhhhhhhc
Confidence                                         0011235788889999988876                   5555566666


Q ss_pred             eeec---CCceEEEEEeccCCcceeEEEEeCEEEeecCCC
Q 012845          200 VSAT---DQCINVIASFLKEGKCTERNIQCNILIGTDGAG  236 (455)
Q Consensus       200 i~~~---~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~  236 (455)
                      ++..   ++-+.|++.   +|.    ..+++-||.++|+.
T Consensus       292 l~~a~~~~~l~ev~l~---nGa----vLkaktvIlstGAr  324 (520)
T COG3634         292 LEPAAVEGGLIEVELA---NGA----VLKARTVILATGAR  324 (520)
T ss_pred             ceecCCCCccEEEEec---CCc----eeccceEEEecCcc
Confidence            6553   555778887   776    78999999999964

>PLN02576 protoporphyrinogen oxidase

Probab=97.96  E-value=9.1e-06  Score=84.15  Aligned_cols=39  Identities=28%  Similarity=0.376  Sum_probs=35.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAFST   80 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~-g~~V~l~Er~~~~~~   80 (455)
                      ..+||+|||||++||++|+.|++. |++|+|+|+++....
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG   50 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG   50 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence            457999999999999999999999 999999999987643

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.94  E-value=0.00012  Score=75.26  Aligned_cols=103  Identities=20%  Similarity=0.416  Sum_probs=73.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.                   |..                     
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il-------------------~~~---------------------  219 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL-------------------PTE---------------------  219 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-------------------CcC---------------------
Confidence            4689999999999999999999999999999876431                   000                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                     ...+.+.+.+.+++.|+                   +++.+++|++++.
T Consensus       220 -------------------------------~~~~~~~l~~~l~~~gI-------------------~i~~~~~v~~i~~  249 (472)
T PRK05976        220 -------------------------------DAELSKEVARLLKKLGV-------------------RVVTGAKVLGLTL  249 (472)
T ss_pred             -------------------------------CHHHHHHHHHHHHhcCC-------------------EEEeCcEEEEEEE
Confidence                                           01233445566667776                   9999999999975


Q ss_pred             -cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          203 -TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       203 -~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                       .++++.+...  .+|+  .+.+.+|.||.|.|.....
T Consensus       250 ~~~~~~~~~~~--~~g~--~~~i~~D~vi~a~G~~p~~  283 (472)
T PRK05976        250 KKDGGVLIVAE--HNGE--EKTLEADKVLVSVGRRPNT  283 (472)
T ss_pred             ecCCCEEEEEE--eCCc--eEEEEeCEEEEeeCCccCC
Confidence             2334433221  1443  2368999999999976543

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.93  E-value=1.1e-05  Score=75.30  Aligned_cols=36  Identities=25%  Similarity=0.593  Sum_probs=33.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +++||+|||||+||++||+.|+++|.++.|+-+...
T Consensus         1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs   36 (421)
T COG3075           1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS   36 (421)
T ss_pred             CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh
Confidence            479999999999999999999999999999998754

>TIGR03452 mycothione_red mycothione reductase

Probab=97.93  E-value=0.00017  Score=73.64  Aligned_cols=32  Identities=16%  Similarity=0.252  Sum_probs=27.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +|||+|||+||+|..+|.  ++.|.+|.|+|+..
T Consensus         2 ~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~~   33 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDP--RFADKRIAIVEKGT   33 (452)
T ss_pred             CcCEEEECCCHHHHHHHH--HHCCCeEEEEeCCC
Confidence            589999999999998864  45799999999853

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=97.93  E-value=1.3e-05  Score=82.34  Aligned_cols=60  Identities=22%  Similarity=0.318  Sum_probs=45.3

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCc------cc----------ccChhHHHHHHhhhchHHHH
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQ------AH----------FINNRYALVFRKLDGLAEEI  105 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~------~~----------~l~~~~~~~l~~~~gl~~~l  105 (455)
                      +|+|||||++||++|+.|+++|++|+|+|+++.+..+.+      +.          ...++..++++++ |+.+.+
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~l-g~~~~~   76 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKV-GAEDNL   76 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHc-CCcccc
Confidence            589999999999999999999999999999987642111      11          1225567777777 776554

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.92  E-value=0.00011  Score=75.05  Aligned_cols=100  Identities=19%  Similarity=0.365  Sum_probs=74.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.                   +++.                    
T Consensus       166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-------------------~~~d--------------------  206 (446)
T TIGR01424       166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL-------------------RGFD--------------------  206 (446)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC-------------------cccC--------------------
Confidence            4579999999999999999999999999999865430                   0110                    


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                      .++.+.+.+.+++.|+                   +++.+++|.+++.
T Consensus       207 --------------------------------~~~~~~l~~~l~~~gV-------------------~i~~~~~v~~i~~  235 (446)
T TIGR01424       207 --------------------------------DDMRALLARNMEGRGI-------------------RIHPQTSLTSITK  235 (446)
T ss_pred             --------------------------------HHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEEE
Confidence                                            1233345566677776                   9999999999987


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      .+++..+.+.   +++    ++.+|.||.|.|.....
T Consensus       236 ~~~~~~v~~~---~g~----~i~~D~viva~G~~pn~  265 (446)
T TIGR01424       236 TDDGLKVTLS---HGE----EIVADVVLFATGRSPNT  265 (446)
T ss_pred             cCCeEEEEEc---CCc----EeecCEEEEeeCCCcCC
Confidence            6666656554   554    78999999999976543

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.92  E-value=9.5e-05  Score=75.46  Aligned_cols=101  Identities=20%  Similarity=0.223  Sum_probs=74.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+.+.                   +++                     
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il-------------------~~~---------------------  205 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-------------------RSF---------------------  205 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------ccc---------------------
Confidence            4689999999999999999999999999999876431                   011                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                    + ..+.+.+.+.+++.|+                   +++.+++|++++.
T Consensus       206 ------------------------------d-~~~~~~~~~~l~~~gI-------------------~i~~~~~v~~i~~  235 (450)
T TIGR01421       206 ------------------------------D-SMISETITEEYEKEGI-------------------NVHKLSKPVKVEK  235 (450)
T ss_pred             ------------------------------C-HHHHHHHHHHHHHcCC-------------------EEEcCCEEEEEEE
Confidence                                          0 1234445666677776                   9999999999986


Q ss_pred             cCCc-eEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          203 TDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       203 ~~~~-~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      ++++ ..+.+.   ++.   ..+.+|.||.|.|.....
T Consensus       236 ~~~~~~~v~~~---~g~---~~i~~D~vi~a~G~~pn~  267 (450)
T TIGR01421       236 TVEGKLVIHFE---DGK---SIDDVDELIWAIGRKPNT  267 (450)
T ss_pred             eCCceEEEEEC---CCc---EEEEcCEEEEeeCCCcCc
Confidence            5443 445544   442   268999999999977654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.90  E-value=1.2e-05  Score=79.16  Aligned_cols=36  Identities=36%  Similarity=0.569  Sum_probs=33.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      +||+|||||++|+++|..|++.|.+|+|+|+++...
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iG   37 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIG   37 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence            699999999999999999999999999999986553

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>TIGR02734 crtI_fam phytoene desaturase

Probab=97.89  E-value=1e-05  Score=83.87  Aligned_cols=34  Identities=35%  Similarity=0.550  Sum_probs=32.4

Q ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        46 VvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      |+|||||++||++|..|++.|++|+|+|++..+.
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~G   34 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPG   34 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCc
Confidence            6999999999999999999999999999998875

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PLN02507 glutathione reductase

Probab=97.89  E-value=0.00014  Score=75.22  Aligned_cols=100  Identities=12%  Similarity=0.284  Sum_probs=75.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+++.+.+-                   +++                     
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-------------------~~~---------------------  242 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-------------------RGF---------------------  242 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-------------------ccc---------------------
Confidence            4689999999999999999999999999999875431                   000                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                    + ..+.+.+.+.+++.|+                   +++.+++|++++.
T Consensus       243 ------------------------------d-~~~~~~l~~~l~~~GI-------------------~i~~~~~V~~i~~  272 (499)
T PLN02507        243 ------------------------------D-DEMRAVVARNLEGRGI-------------------NLHPRTNLTQLTK  272 (499)
T ss_pred             ------------------------------C-HHHHHHHHHHHHhCCC-------------------EEEeCCEEEEEEE
Confidence                                          0 1233445556667776                   9999999999987


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      .++++.+...   +|.    ++.+|.||.|.|.....
T Consensus       273 ~~~~~~v~~~---~g~----~i~~D~vl~a~G~~pn~  302 (499)
T PLN02507        273 TEGGIKVITD---HGE----EFVADVVLFATGRAPNT  302 (499)
T ss_pred             eCCeEEEEEC---CCc----EEEcCEEEEeecCCCCC
Confidence            6666655543   554    68999999999977654

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.88  E-value=1.3e-05  Score=87.73  Aligned_cols=37  Identities=32%  Similarity=0.557  Sum_probs=34.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..++|+||||||||+++|+.|++.|++|+|||+.+.+
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~l  572 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKP  572 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence            4579999999999999999999999999999998765

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.87  E-value=0.00016  Score=74.23  Aligned_cols=100  Identities=17%  Similarity=0.286  Sum_probs=75.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+.+.+                   ..                     
T Consensus       177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~-------------------~~---------------------  216 (466)
T PRK07845        177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP-------------------GE---------------------  216 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC-------------------CC---------------------
Confidence            35899999999999999999999999999998654310                   00                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                    + ..+...+.+.+++.|+                   +++.+++|.+++.
T Consensus       217 ------------------------------d-~~~~~~l~~~L~~~gV-------------------~i~~~~~v~~v~~  246 (466)
T PRK07845        217 ------------------------------D-ADAAEVLEEVFARRGM-------------------TVLKRSRAESVER  246 (466)
T ss_pred             ------------------------------C-HHHHHHHHHHHHHCCc-------------------EEEcCCEEEEEEE
Confidence                                          0 1233445666677776                   9999999999987


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      +++++.+.+.   +|+    .+.+|.||.|.|.....
T Consensus       247 ~~~~~~v~~~---~g~----~l~~D~vl~a~G~~pn~  276 (466)
T PRK07845        247 TGDGVVVTLT---DGR----TVEGSHALMAVGSVPNT  276 (466)
T ss_pred             eCCEEEEEEC---CCc----EEEecEEEEeecCCcCC
Confidence            6666666554   554    68999999999987654

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=97.86  E-value=5.4e-05  Score=76.30  Aligned_cols=47  Identities=17%  Similarity=0.292  Sum_probs=37.1

Q ss_pred             ccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhh
Q 012845          187 QGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVR  240 (455)
Q Consensus       187 ~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr  240 (455)
                      .+.+|+++++|++|+.+++++.+++.   +|+    ++.+|.||.|.......+
T Consensus       222 ~g~~i~l~~~V~~I~~~~~~v~v~~~---~g~----~~~ad~VI~a~p~~~l~~  268 (450)
T PF01593_consen  222 LGGEIRLNTPVTRIEREDGGVTVTTE---DGE----TIEADAVISAVPPSVLKN  268 (450)
T ss_dssp             HGGGEESSEEEEEEEEESSEEEEEET---TSS----EEEESEEEE-S-HHHHHT
T ss_pred             cCceeecCCcceeccccccccccccc---cce----EEecceeeecCchhhhhh
Confidence            34589999999999999999888887   776    889999999988555443

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=97.86  E-value=0.0021  Score=59.71  Aligned_cols=39  Identities=23%  Similarity=0.367  Sum_probs=31.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCC-------CCEEEEcCCCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLG-------IKCSVLEKNKAFST   80 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g-------~~V~l~Er~~~~~~   80 (455)
                      +..+|+|||+|+.||+.|+.+.+..       .+|+|++-+..+..
T Consensus         2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T   47 (342)
T KOG3923|consen    2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDT   47 (342)
T ss_pred             CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCcccc
Confidence            3468999999999999998887743       67999987766543

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.86  E-value=7.2e-05  Score=81.62  Aligned_cols=36  Identities=22%  Similarity=0.245  Sum_probs=31.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~----g~~V~l~Er~~~~   78 (455)
                      +.+|||||+|+||+.+|..|.+.    +++|+||++.+.+
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~   42 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI   42 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence            34899999999999999999764    5899999988765

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.85  E-value=0.00021  Score=72.89  Aligned_cols=99  Identities=15%  Similarity=0.288  Sum_probs=73.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+...                   |..                     
T Consensus       158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------~~~---------------------  197 (441)
T PRK08010        158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL-------------------PRE---------------------  197 (441)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC-------------------CCc---------------------
Confidence            4589999999999999999999999999999865321                   000                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                    + ..+.+.+.+.+++.|+                   +++.+++|.+++.
T Consensus       198 ------------------------------~-~~~~~~l~~~l~~~gV-------------------~v~~~~~v~~i~~  227 (441)
T PRK08010        198 ------------------------------D-RDIADNIATILRDQGV-------------------DIILNAHVERISH  227 (441)
T ss_pred             ------------------------------C-HHHHHHHHHHHHhCCC-------------------EEEeCCEEEEEEE
Confidence                                          0 1233446667777786                   9999999999987


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      +++.+.+...   ++     .+.+|.||.|.|.....
T Consensus       228 ~~~~v~v~~~---~g-----~i~~D~vl~a~G~~pn~  256 (441)
T PRK08010        228 HENQVQVHSE---HA-----QLAVDALLIASGRQPAT  256 (441)
T ss_pred             cCCEEEEEEc---CC-----eEEeCEEEEeecCCcCC
Confidence            6655544432   33     57899999999987653

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=97.83  E-value=0.00019  Score=72.78  Aligned_cols=98  Identities=18%  Similarity=0.389  Sum_probs=71.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||++|+-+|..|++.|.+|+++++.+.+.        .       .   .+                     
T Consensus       137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~--------~-------~---~~---------------------  177 (427)
T TIGR03385       137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL--------N-------K---LF---------------------  177 (427)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccC--------c-------c---cc---------------------
Confidence            3589999999999999999999999999999875430        0       0   00                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                    + ..+.+.+.+.+++.|+                   +++.+++|.+++.
T Consensus       178 ------------------------------~-~~~~~~~~~~l~~~gV-------------------~v~~~~~v~~i~~  207 (427)
T TIGR03385       178 ------------------------------D-EEMNQIVEEELKKHEI-------------------NLRLNEEVDSIEG  207 (427)
T ss_pred             ------------------------------C-HHHHHHHHHHHHHcCC-------------------EEEeCCEEEEEec
Confidence                                          0 1234446666677776                   8999999999976


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      ++. + +.+.   +|.    ++.+|.||.|.|....
T Consensus       208 ~~~-~-v~~~---~g~----~i~~D~vi~a~G~~p~  234 (427)
T TIGR03385       208 EER-V-KVFT---SGG----VYQADMVILATGIKPN  234 (427)
T ss_pred             CCC-E-EEEc---CCC----EEEeCEEEECCCccCC
Confidence            432 2 3333   554    7899999999997643

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK07846 mycothione reductase; Reviewed

Probab=97.82  E-value=0.00017  Score=73.55  Aligned_cols=35  Identities=20%  Similarity=0.475  Sum_probs=32.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~  200 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGR  200 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence            46899999999999999999999999999998754

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.78  E-value=7.8e-05  Score=81.18  Aligned_cols=33  Identities=18%  Similarity=0.227  Sum_probs=29.1

Q ss_pred             EEEECCCHHHHHHHHHHHhC---CCCEEEEcCCCCC
Q 012845           46 VLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKAF   78 (455)
Q Consensus        46 VvIVGgG~aGl~~A~~La~~---g~~V~l~Er~~~~   78 (455)
                      |||||||+||+.+|..|.+.   +++|+|||+.+.+
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~   36 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP   36 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence            69999999999999998775   5789999988765

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.77  E-value=0.00025  Score=72.38  Aligned_cols=35  Identities=23%  Similarity=0.429  Sum_probs=31.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|+|||||++|+-+|..|++.|.+|+++++.+.
T Consensus       149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~  183 (444)
T PRK09564        149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR  183 (444)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence            35899999999999999999999999999987643

>PLN02785 Protein HOTHEAD

Probab=97.77  E-value=4.1e-05  Score=80.27  Aligned_cols=66  Identities=20%  Similarity=0.314  Sum_probs=45.1

Q ss_pred             ccccccccCCCCCc-cccccc-CCCcccccCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           12 CFSRIKTFPYPYGY-TQCRAL-SDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        12 ~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      |=....+..||.+. .+..+. +++.+.+-....||++|||||.||+.+|..|++ +.+|+|||+...+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~~   89 (587)
T PLN02785         22 GKSHFTPYRYPFIDKASSFSSSSSSSSSSGGDSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGVP   89 (587)
T ss_pred             ccccCCccCCchhhccccccccccccccccccccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCCC
Confidence            33445566676662 222222 222222223457999999999999999999999 6999999998743

>PRK14694 putative mercuric reductase; Provisional

Probab=97.77  E-value=0.00026  Score=72.73  Aligned_cols=98  Identities=17%  Similarity=0.301  Sum_probs=71.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||+|+.|+-+|..|++.|.+|+|+++.....                    ..                     
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~--------------------~~---------------------  216 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLS--------------------QE---------------------  216 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCC--------------------CC---------------------
Confidence            4689999999999999999999999999998632110                    00                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                     ...+.+.+.+.+++.|+                   +++.+++|.+++.
T Consensus       217 -------------------------------~~~~~~~l~~~l~~~GI-------------------~v~~~~~v~~i~~  246 (468)
T PRK14694        217 -------------------------------DPAVGEAIEAAFRREGI-------------------EVLKQTQASEVDY  246 (468)
T ss_pred             -------------------------------CHHHHHHHHHHHHhCCC-------------------EEEeCCEEEEEEE
Confidence                                           01233446666677776                   9999999999987


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      +++.+.+...   ++     ++.+|.||.|.|.....
T Consensus       247 ~~~~~~v~~~---~~-----~i~~D~vi~a~G~~pn~  275 (468)
T PRK14694        247 NGREFILETN---AG-----TLRAEQLLVATGRTPNT  275 (468)
T ss_pred             cCCEEEEEEC---CC-----EEEeCEEEEccCCCCCc
Confidence            6554444322   33     68999999999987654

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.77  E-value=7.6e-05  Score=72.06  Aligned_cols=157  Identities=18%  Similarity=0.276  Sum_probs=94.9

Q ss_pred             cCCcccCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccc
Q 012845           39 SNEAVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRK  117 (455)
Q Consensus        39 ~~~~~~dVvIVGgG~aGl~~A~~La~~g-~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~  117 (455)
                      ||+..+|++.||-||+-|++|+.|..++ .++..+||.+..+.+... .+....++.     -+..+|.....|...+..
T Consensus         1 ~~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGm-llegstlQv-----~FlkDLVTl~~PTs~ySF   74 (436)
T COG3486           1 MMAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGM-LLEGSTLQV-----PFLKDLVTLVDPTSPYSF   74 (436)
T ss_pred             CCCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCc-ccCCccccc-----cchhhhccccCCCCchHH
Confidence            3567899999999999999999999985 789999999988766542 222111111     122333333333322221


Q ss_pred             eEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEE
Q 012845          118 FIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHEC  197 (455)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v  197 (455)
                      .-+. ...++.....             .....++.|.+..+++.-.+....                    .++++.+|
T Consensus        75 LNYL-~~h~RLy~Fl-------------~~e~f~i~R~Ey~dY~~Waa~~l~--------------------~~rfg~~V  120 (436)
T COG3486          75 LNYL-HEHGRLYEFL-------------NYETFHIPRREYNDYCQWAASQLP--------------------SLRFGEEV  120 (436)
T ss_pred             HHHH-HHcchHhhhh-------------hhhcccccHHHHHHHHHHHHhhCC--------------------ccccCCee
Confidence            1110 1122221111             223467889999999999988875                    79999999


Q ss_pred             EEeeecC-CceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          198 VSVSATD-QCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       198 ~~i~~~~-~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      +.|..-+ +.....+.-..+++    .++|+-||...|..-.+
T Consensus       121 ~~i~~~~~d~~~~~~~~t~~~~----~y~ar~lVlg~G~~P~I  159 (436)
T COG3486         121 TDISSLDGDAVVRLFVVTANGT----VYRARNLVLGVGTQPYI  159 (436)
T ss_pred             ccccccCCcceeEEEEEcCCCc----EEEeeeEEEccCCCcCC
Confidence            9774322 22222111111443    78999999999965433

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=97.77  E-value=2.9e-05  Score=72.46  Aligned_cols=36  Identities=33%  Similarity=0.530  Sum_probs=34.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      +|++|||+|++|+.+|..|+++|.+|+|+||+++++
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIG   37 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIG   37 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCC
Confidence            799999999999999999999999999999999875

>PRK14727 putative mercuric reductase; Provisional

Probab=97.76  E-value=0.0003  Score=72.49  Aligned_cols=98  Identities=16%  Similarity=0.258  Sum_probs=72.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||..|+-+|..|++.|.+|+|+++....                    +.+.                    
T Consensus       188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l--------------------~~~d--------------------  227 (479)
T PRK14727        188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLL--------------------FRED--------------------  227 (479)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCC--------------------Ccch--------------------
Confidence            368999999999999999999999999999864211                    0000                    


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                      ..+.+.+.+.+++.|+                   +++.+++|++++.
T Consensus       228 --------------------------------~~~~~~l~~~L~~~GV-------------------~i~~~~~V~~i~~  256 (479)
T PRK14727        228 --------------------------------PLLGETLTACFEKEGI-------------------EVLNNTQASLVEH  256 (479)
T ss_pred             --------------------------------HHHHHHHHHHHHhCCC-------------------EEEcCcEEEEEEE
Confidence                                            1233445666677776                   8999999999987


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      +++.+.+...   ++     ++.+|.||.|.|.....
T Consensus       257 ~~~~~~v~~~---~g-----~i~aD~VlvA~G~~pn~  285 (479)
T PRK14727        257 DDNGFVLTTG---HG-----ELRAEKLLISTGRHANT  285 (479)
T ss_pred             eCCEEEEEEc---CC-----eEEeCEEEEccCCCCCc
Confidence            6665555432   33     57899999999988754

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.76  E-value=0.00021  Score=77.90  Aligned_cols=98  Identities=19%  Similarity=0.418  Sum_probs=72.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEeec
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~~  123 (455)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+                +..  .+                      
T Consensus       141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l----------------l~~--~l----------------------  180 (785)
T TIGR02374       141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL----------------MAK--QL----------------------  180 (785)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch----------------hhh--hc----------------------
Confidence            57999999999999999999999999999976432                000  00                      


Q ss_pred             CCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeec
Q 012845          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (455)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~  203 (455)
                                                   + ..+.+.+.+.+++.|+                   +++.++.++++..+
T Consensus       181 -----------------------------d-~~~~~~l~~~l~~~GV-------------------~v~~~~~v~~i~~~  211 (785)
T TIGR02374       181 -----------------------------D-QTAGRLLQRELEQKGL-------------------TFLLEKDTVEIVGA  211 (785)
T ss_pred             -----------------------------C-HHHHHHHHHHHHHcCC-------------------EEEeCCceEEEEcC
Confidence                                         0 1233445566677786                   99999999998765


Q ss_pred             CCceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       204 ~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                      +....+++.   +|+    .+.+|+||.|.|...
T Consensus       212 ~~~~~v~~~---dG~----~i~~D~Vi~a~G~~P  238 (785)
T TIGR02374       212 TKADRIRFK---DGS----SLEADLIVMAAGIRP  238 (785)
T ss_pred             CceEEEEEC---CCC----EEEcCEEEECCCCCc
Confidence            443445555   665    789999999999764

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.76  E-value=3e-05  Score=76.02  Aligned_cols=38  Identities=26%  Similarity=0.551  Sum_probs=35.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      ...+|+|||||+||+++|+.|++.|++|.|+||.+...
T Consensus       123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiG  160 (622)
T COG1148         123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIG  160 (622)
T ss_pred             hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccc
Confidence            45689999999999999999999999999999999875

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.75  E-value=0.00016  Score=71.36  Aligned_cols=37  Identities=16%  Similarity=0.276  Sum_probs=32.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g--~~V~l~Er~~~~   78 (455)
                      .+.+|||||||-+|+.+|..|.++-  .+|+++||+...
T Consensus         2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h   40 (405)
T COG1252           2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH   40 (405)
T ss_pred             CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc
Confidence            3568999999999999999999984  899999998764

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.74  E-value=2.9e-05  Score=83.83  Aligned_cols=35  Identities=29%  Similarity=0.516  Sum_probs=32.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ...+|+||||||||+++|+.|++.|++|+|||+.+
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~  416 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK  416 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence            46789999999999999999999999999999863

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.73  E-value=2.8e-05  Score=74.73  Aligned_cols=35  Identities=34%  Similarity=0.490  Sum_probs=30.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAF   78 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g-~~V~l~Er~~~~   78 (455)
                      ||+||||+|++|+.+|..|++.| .+|+|+|+.+..
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~   36 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRY   36 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSC
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccC
Confidence            79999999999999999999997 799999999754

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.72  E-value=4e-05  Score=78.17  Aligned_cols=38  Identities=32%  Similarity=0.427  Sum_probs=34.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...++|+|||||++|+++|..|++.|++|+|||+.+.+
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~  168 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP  168 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            35689999999999999999999999999999998654

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.72  E-value=0.00041  Score=71.39  Aligned_cols=102  Identities=14%  Similarity=0.183  Sum_probs=73.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+++. .+.                   +.+.                    
T Consensus       180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l-------------------~~~d--------------------  219 (484)
T TIGR01438       180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL-------------------RGFD--------------------  219 (484)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccc-------------------cccC--------------------
Confidence            357999999999999999999999999999863 210                   0110                    


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                      ..+.+.+.+.+++.|+                   .++.++.+..++.
T Consensus       220 --------------------------------~~~~~~l~~~L~~~gV-------------------~i~~~~~v~~v~~  248 (484)
T TIGR01438       220 --------------------------------QDCANKVGEHMEEHGV-------------------KFKRQFVPIKVEQ  248 (484)
T ss_pred             --------------------------------HHHHHHHHHHHHHcCC-------------------EEEeCceEEEEEE
Confidence                                            1233445666677776                   9999999999887


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      .++.+.+.+.   +++. ..++.+|.||.|.|.....
T Consensus       249 ~~~~~~v~~~---~~~~-~~~i~~D~vl~a~G~~pn~  281 (484)
T TIGR01438       249 IEAKVKVTFT---DSTN-GIEEEYDTVLLAIGRDACT  281 (484)
T ss_pred             cCCeEEEEEe---cCCc-ceEEEeCEEEEEecCCcCC
Confidence            6555555554   4321 1368999999999976543

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.71  E-value=0.00035  Score=72.26  Aligned_cols=98  Identities=21%  Similarity=0.312  Sum_probs=72.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEeec
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~~  123 (455)
                      .+|+|||||+.|+-+|..|++.|.+|+|+++. .+.                .   .+.                     
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l----------------~---~~d---------------------  221 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPL----------------R---GFD---------------------  221 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccc----------------c---cCC---------------------
Confidence            48999999999999999999999999999863 210                0   010                     


Q ss_pred             CCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeec
Q 012845          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (455)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~  203 (455)
                                                     ..+.+.+.+.+++.|+                   +++.++++..++..
T Consensus       222 -------------------------------~~~~~~l~~~l~~~GV-------------------~i~~~~~v~~v~~~  251 (499)
T PTZ00052        222 -------------------------------RQCSEKVVEYMKEQGT-------------------LFLEGVVPINIEKM  251 (499)
T ss_pred             -------------------------------HHHHHHHHHHHHHcCC-------------------EEEcCCeEEEEEEc
Confidence                                           1233445566677776                   89999999988765


Q ss_pred             CCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       204 ~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      ++...+.+.   +|.    ++.+|.||.|.|.....
T Consensus       252 ~~~~~v~~~---~g~----~i~~D~vl~a~G~~pn~  280 (499)
T PTZ00052        252 DDKIKVLFS---DGT----TELFDTVLYATGRKPDI  280 (499)
T ss_pred             CCeEEEEEC---CCC----EEEcCEEEEeeCCCCCc
Confidence            555555554   554    67899999999987654

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.71  E-value=0.00034  Score=71.94  Aligned_cols=100  Identities=21%  Similarity=0.280  Sum_probs=73.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceE
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~---g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~  119 (455)
                      ..+|+|||||+.|+-+|..|+..   |.+|+|+|+.+.+.                   +.+                  
T Consensus       187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il-------------------~~~------------------  229 (486)
T TIGR01423       187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL-------------------RGF------------------  229 (486)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc-------------------ccc------------------
Confidence            46899999999999999877554   99999999876531                   000                  


Q ss_pred             EeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEE
Q 012845          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (455)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~  199 (455)
                                                       + ..+.+.+.+.+++.|+                   +++.++.|++
T Consensus       230 ---------------------------------d-~~~~~~l~~~L~~~GI-------------------~i~~~~~v~~  256 (486)
T TIGR01423       230 ---------------------------------D-STLRKELTKQLRANGI-------------------NIMTNENPAK  256 (486)
T ss_pred             ---------------------------------C-HHHHHHHHHHHHHcCC-------------------EEEcCCEEEE
Confidence                                             0 1344556666777776                   9999999999


Q ss_pred             eeecCCc-eEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          200 VSATDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       200 i~~~~~~-~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      ++.++++ ..+.+.   ++.    .+.+|.||.|.|.....
T Consensus       257 i~~~~~~~~~v~~~---~g~----~i~~D~vl~a~G~~Pn~  290 (486)
T TIGR01423       257 VTLNADGSKHVTFE---SGK----TLDVDVVMMAIGRVPRT  290 (486)
T ss_pred             EEEcCCceEEEEEc---CCC----EEEcCEEEEeeCCCcCc
Confidence            9865444 345444   454    78999999999977654

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.70  E-value=0.00035  Score=71.13  Aligned_cols=34  Identities=24%  Similarity=0.368  Sum_probs=31.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .+|+|||||..|+-+|..|++.|.+|+|+|+.+.
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~  182 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDK  182 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence            5899999999999999999999999999998754

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.70  E-value=0.00034  Score=70.31  Aligned_cols=98  Identities=27%  Similarity=0.446  Sum_probs=75.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEeec
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~~  123 (455)
                      .+|+|||+|++|+.+|..|+++|++|+++|+.+.+.....                                        
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~----------------------------------------  176 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL----------------------------------------  176 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh----------------------------------------
Confidence            6999999999999999999999999999999876520000                                        


Q ss_pred             CCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeec
Q 012845          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (455)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~  203 (455)
                                                   . ..+.+.+.+.+++.|+                   .++.+..++.++..
T Consensus       177 -----------------------------~-~~~~~~~~~~l~~~gi-------------------~~~~~~~~~~i~~~  207 (415)
T COG0446         177 -----------------------------D-PEVAEELAELLEKYGV-------------------ELLLGTKVVGVEGK  207 (415)
T ss_pred             -----------------------------h-HHHHHHHHHHHHHCCc-------------------EEEeCCceEEEEcc
Confidence                                         0 2445556677777776                   89999999999987


Q ss_pred             CCceE---EEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          204 DQCIN---VIASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       204 ~~~~~---v~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                      ++...   +...   ++.    .+.+|+++.+.|..-
T Consensus       208 ~~~~~~~~~~~~---~~~----~~~~d~~~~~~g~~p  237 (415)
T COG0446         208 GNTLVVERVVGI---DGE----EIKADLVIIGPGERP  237 (415)
T ss_pred             cCcceeeEEEEe---CCc----EEEeeEEEEeecccc
Confidence            66543   2333   443    789999999998654

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.69  E-value=4.2e-05  Score=81.80  Aligned_cols=37  Identities=30%  Similarity=0.559  Sum_probs=34.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...+|+|||||||||++|..|++.|++|+|||+.+.+
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~  362 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEI  362 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            4579999999999999999999999999999998765

>PRK02106 choline dehydrogenase; Validated

Probab=97.69  E-value=4.2e-05  Score=80.29  Aligned_cols=38  Identities=26%  Similarity=0.385  Sum_probs=34.8

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHh-CCCCEEEEcCCCC
Q 012845           40 NEAVVPVLIVGAGPVGLVLSILLTK-LGIKCSVLEKNKA   77 (455)
Q Consensus        40 ~~~~~dVvIVGgG~aGl~~A~~La~-~g~~V~l~Er~~~   77 (455)
                      +...+|++|||||++|+.+|..|++ .|++|+|||+.+.
T Consensus         2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~   40 (560)
T PRK02106          2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP   40 (560)
T ss_pred             CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence            4567999999999999999999999 7999999999964

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.68  E-value=0.00016  Score=70.91  Aligned_cols=36  Identities=22%  Similarity=0.412  Sum_probs=32.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ..+|||||||||=||+-+|.+.+|.|-+.+++-.+-
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l   61 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL   61 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence            468999999999999999999999999988887664

>TIGR03452 mycothione_red mycothione reductase

Probab=97.67  E-value=0.00047  Score=70.43  Aligned_cols=35  Identities=17%  Similarity=0.457  Sum_probs=32.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~  203 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTK  203 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence            46899999999999999999999999999998653

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.66  E-value=0.00058  Score=70.02  Aligned_cols=37  Identities=30%  Similarity=0.605  Sum_probs=33.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...+|+|||||+.|+-+|..|++.|.+|+|+|+.+..
T Consensus       168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  204 (460)
T PRK06292        168 LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI  204 (460)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence            3468999999999999999999999999999987543

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.66  E-value=5.1e-05  Score=76.41  Aligned_cols=38  Identities=29%  Similarity=0.296  Sum_probs=33.2

Q ss_pred             cccCEEEECCCHHHHHHHHHH-HhCCCCEEEEcCCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILL-TKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~L-a~~g~~V~l~Er~~~~~   79 (455)
                      ...+|+||||||||+.+|..| ++.|++|+||||.+.+.
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg   76 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY   76 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence            346799999999999999976 56799999999998874

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.65  E-value=4.9e-05  Score=84.48  Aligned_cols=38  Identities=32%  Similarity=0.485  Sum_probs=34.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      ...+|+|||||||||++|..|++.|++|+|||+.+.+.
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~G  466 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVG  466 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCc
Confidence            35799999999999999999999999999999987653

>PRK13748 putative mercuric reductase; Provisional

Probab=97.65  E-value=0.00044  Score=72.80  Aligned_cols=98  Identities=16%  Similarity=0.288  Sum_probs=71.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+++....          +          ..                     
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l----------~----------~~---------------------  308 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLF----------F----------RE---------------------  308 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc----------c----------cc---------------------
Confidence            468999999999999999999999999999974211          0          00                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                     -..+.+.+.+.+++.|+                   +++.+++|++++.
T Consensus       309 -------------------------------d~~~~~~l~~~l~~~gI-------------------~i~~~~~v~~i~~  338 (561)
T PRK13748        309 -------------------------------DPAIGEAVTAAFRAEGI-------------------EVLEHTQASQVAH  338 (561)
T ss_pred             -------------------------------CHHHHHHHHHHHHHCCC-------------------EEEcCCEEEEEEe
Confidence                                           01233345566677776                   9999999999987


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      +++.+.+...   ++     .+.+|.||.|.|.....
T Consensus       339 ~~~~~~v~~~---~~-----~i~~D~vi~a~G~~pn~  367 (561)
T PRK13748        339 VDGEFVLTTG---HG-----ELRADKLLVATGRAPNT  367 (561)
T ss_pred             cCCEEEEEec---CC-----eEEeCEEEEccCCCcCC
Confidence            6655444432   33     57999999999976544

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.64  E-value=5.6e-05  Score=75.81  Aligned_cols=34  Identities=24%  Similarity=0.504  Sum_probs=32.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ++||+|||+|++|+++|+.|++.|.+|+|+|+..
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~   35 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ   35 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence            5899999999999999999999999999999874

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.63  E-value=0.0011  Score=64.83  Aligned_cols=140  Identities=16%  Similarity=0.163  Sum_probs=79.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCCCCC----CCcccccChhHHHHHHhhh-chHHHHHhcCCCcc
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKAFST----HPQAHFINNRYALVFRKLD-GLAEEIERSQPPVD  113 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~~~~~----~~~~~~l~~~~~~~l~~~~-gl~~~l~~~~~~~~  113 (455)
                      .....|+|||||.++.-++..|.+.+.  +|+++=|+....+    .......+|..++.+..+| ....++.....   
T Consensus       188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~---  264 (341)
T PF13434_consen  188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQR---  264 (341)
T ss_dssp             ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTG---
T ss_pred             cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhH---
Confidence            456899999999999999999999875  7999999876532    2223456777776666552 11111111100   


Q ss_pred             cccceEEeecCCCCccccccCCCccccccccCCccccccchhh---HHHHHHHH-HHhcccccccCCCcccccccccccc
Q 012845          114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYK---LNKLLLKQ-LEKLNFKICTSEGTEGLHNHLLQGR  189 (455)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~---l~~~L~~~-~~~~g~~~~~~~~~~~~~~~~~~~~  189 (455)
                                                      ..++..|+...   |.+.|.+. +...+                  ..
T Consensus       265 --------------------------------~~ny~~i~~~~l~~iy~~lY~~~v~g~~------------------~~  294 (341)
T PF13434_consen  265 --------------------------------HTNYGGIDPDLLEAIYDRLYEQRVSGRG------------------RL  294 (341)
T ss_dssp             --------------------------------GGTSSEB-HHHHHHHHHHHHHHHHHT---------------------S
T ss_pred             --------------------------------hhcCCCCCHHHHHHHHHHHHHHHhcCCC------------------Ce
Confidence                                            01122343332   23333322 11111                  24


Q ss_pred             eEEeccEEEEeeecC-CceEEEEEeccCCcceeEEEEeCEEEeecCC
Q 012845          190 EILMGHECVSVSATD-QCINVIASFLKEGKCTERNIQCNILIGTDGA  235 (455)
Q Consensus       190 ~i~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~  235 (455)
                      +++-+++|++++..+ +++.+++.....  +...++.+|.||.|+|.
T Consensus       295 ~l~~~~~v~~~~~~~~~~~~l~~~~~~~--~~~~~~~~D~VilATGy  339 (341)
T PF13434_consen  295 RLLPNTEVTSAEQDGDGGVRLTLRHRQT--GEEETLEVDAVILATGY  339 (341)
T ss_dssp             EEETTEEEEEEEEES-SSEEEEEEETTT----EEEEEESEEEE---E
T ss_pred             EEeCCCEEEEEEECCCCEEEEEEEECCC--CCeEEEecCEEEEcCCc
Confidence            889999999999888 488888874333  34568899999999994

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.63  E-value=6.4e-05  Score=77.18  Aligned_cols=37  Identities=32%  Similarity=0.527  Sum_probs=34.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..++|+||||||+|+++|..|++.|++|+|||+.+.+
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~  178 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI  178 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            4579999999999999999999999999999998765

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.62  E-value=0.00042  Score=75.75  Aligned_cols=99  Identities=15%  Similarity=0.271  Sum_probs=72.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEeec
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~~  123 (455)
                      ..++|||||+.|+-+|..|++.|.+|+|+|+.+..                +..  .+                      
T Consensus       146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~l----------------l~~--~l----------------------  185 (847)
T PRK14989        146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPML----------------MAE--QL----------------------  185 (847)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc----------------hhh--hc----------------------
Confidence            47999999999999999999999999999986532                000  00                      


Q ss_pred             CCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeec
Q 012845          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (455)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~  203 (455)
                                                   + ....+.|.+.+++.|+                   +++.++.++++..+
T Consensus       186 -----------------------------d-~~~~~~l~~~L~~~GV-------------------~v~~~~~v~~I~~~  216 (847)
T PRK14989        186 -----------------------------D-QMGGEQLRRKIESMGV-------------------RVHTSKNTLEIVQE  216 (847)
T ss_pred             -----------------------------C-HHHHHHHHHHHHHCCC-------------------EEEcCCeEEEEEec
Confidence                                         0 1233456666777787                   99999999999754


Q ss_pred             CC--ceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          204 DQ--CINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       204 ~~--~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      +.  ...+.+.   +|+    .+.+|+||.|.|....
T Consensus       217 ~~~~~~~v~~~---dG~----~i~~D~Vv~A~G~rPn  246 (847)
T PRK14989        217 GVEARKTMRFA---DGS----ELEVDFIVFSTGIRPQ  246 (847)
T ss_pred             CCCceEEEEEC---CCC----EEEcCEEEECCCcccC
Confidence            32  2334444   665    7899999999997654

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.62  E-value=5.9e-05  Score=81.97  Aligned_cols=37  Identities=30%  Similarity=0.446  Sum_probs=33.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...+|+||||||||+++|..|++.|++|+|||+.+.+
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~  466 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEI  466 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            4679999999999999999999999999999987654

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.61  E-value=6.7e-05  Score=72.71  Aligned_cols=65  Identities=23%  Similarity=0.359  Sum_probs=45.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCE--EEEcCCCCCCCCC-----ccc--------cc------ChhHHHHHHhhhc
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKC--SVLEKNKAFSTHP-----QAH--------FI------NNRYALVFRKLDG  100 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V--~l~Er~~~~~~~~-----~~~--------~l------~~~~~~~l~~~~g  100 (455)
                      ...+|+|||||++||++|++|++++.+|  +|||..+......     ...        .+      ..+.+.++..+ |
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dL-G   88 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDL-G   88 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHc-C
Confidence            4578999999999999999999998764  6699887543210     000        11      12466777788 8


Q ss_pred             hHHHHHh
Q 012845          101 LAEEIER  107 (455)
Q Consensus       101 l~~~l~~  107 (455)
                      +.+++..
T Consensus        89 l~~e~~~   95 (491)
T KOG1276|consen   89 LEDELQP   95 (491)
T ss_pred             ccceeee
Confidence            8766644

>PTZ00058 glutathione reductase; Provisional

Probab=97.58  E-value=0.00062  Score=71.03  Aligned_cols=100  Identities=14%  Similarity=0.266  Sum_probs=72.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+.+.                   +.+                     
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il-------------------~~~---------------------  276 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL-------------------RKF---------------------  276 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc-------------------ccC---------------------
Confidence            5689999999999999999999999999999875421                   000                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                    + ..+.+.+.+.+++.|+                   +++.++.|.+++.
T Consensus       277 ------------------------------d-~~i~~~l~~~L~~~GV-------------------~i~~~~~V~~I~~  306 (561)
T PTZ00058        277 ------------------------------D-ETIINELENDMKKNNI-------------------NIITHANVEEIEK  306 (561)
T ss_pred             ------------------------------C-HHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEEe
Confidence                                          0 1233445566677776                   9999999999986


Q ss_pred             cCC-ceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          203 TDQ-CINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       203 ~~~-~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      +++ ++.+...   ++.   .++.+|.||.|.|....
T Consensus       307 ~~~~~v~v~~~---~~~---~~i~aD~VlvA~Gr~Pn  337 (561)
T PTZ00058        307 VKEKNLTIYLS---DGR---KYEHFDYVIYCVGRSPN  337 (561)
T ss_pred             cCCCcEEEEEC---CCC---EEEECCEEEECcCCCCC
Confidence            543 3444332   322   26899999999997654

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.58  E-value=7.8e-05  Score=76.31  Aligned_cols=38  Identities=26%  Similarity=0.470  Sum_probs=34.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ....+|+||||||+|+++|..|++.|++|+|||+.+.+
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~  175 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA  175 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence            34579999999999999999999999999999998754

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.50  E-value=0.00011  Score=78.35  Aligned_cols=37  Identities=30%  Similarity=0.519  Sum_probs=34.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...+|+||||||+|+++|+.|++.|++|+|||+.+.+
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~  228 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA  228 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            4579999999999999999999999999999998765

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.49  E-value=0.00012  Score=74.99  Aligned_cols=37  Identities=27%  Similarity=0.581  Sum_probs=34.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      +..+|+||||||+|+++|..|++.|++|+|||+.+.+
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~  176 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI  176 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            4579999999999999999999999999999998765

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.44  E-value=0.00015  Score=77.24  Aligned_cols=37  Identities=27%  Similarity=0.574  Sum_probs=34.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...+|+||||||+||++|..|++.|++|+|||+.+.+
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~  345 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI  345 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence            4678999999999999999999999999999998865

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.43  E-value=0.00066  Score=63.71  Aligned_cols=35  Identities=23%  Similarity=0.372  Sum_probs=32.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ...|-|||||+||.-+|+.++++|++|.|+|.++.
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~   37 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV   37 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence            45699999999999999999999999999999864

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.43  E-value=0.0002  Score=71.16  Aligned_cols=34  Identities=29%  Similarity=0.661  Sum_probs=31.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +||+|||||++|+++|+.|+++|++|.|+|+...
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~~   34 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQS   34 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCCc
Confidence            5999999999999999999999999999998753

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=97.42  E-value=0.00099  Score=66.51  Aligned_cols=62  Identities=16%  Similarity=0.279  Sum_probs=50.3

Q ss_pred             cccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEE
Q 012845          150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNIL  229 (455)
Q Consensus       150 ~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~v  229 (455)
                      .+++...+...|.+.+.+ |+                   +++.+++|.+++.+++.+.+.+.   +|.    .+.+|.|
T Consensus       130 g~idp~~~~~~l~~~~~~-G~-------------------~i~~~~~V~~i~~~~~~~~v~t~---~g~----~~~a~~v  182 (381)
T TIGR03197       130 GWLSPPQLCRALLAHAGI-RL-------------------TLHFNTEITSLERDGEGWQLLDA---NGE----VIAASVV  182 (381)
T ss_pred             cccChHHHHHHHHhccCC-Cc-------------------EEEeCCEEEEEEEcCCeEEEEeC---CCC----EEEcCEE
Confidence            456777788888888877 76                   99999999999987777766655   664    5799999


Q ss_pred             EeecCCCch
Q 012845          230 IGTDGAGST  238 (455)
Q Consensus       230 V~AdG~~S~  238 (455)
                      |.|+|.++.
T Consensus       183 V~a~G~~~~  191 (381)
T TIGR03197       183 VLANGAQAG  191 (381)
T ss_pred             EEcCCcccc
Confidence            999999985

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.40  E-value=0.0013  Score=66.75  Aligned_cols=93  Identities=23%  Similarity=0.380  Sum_probs=67.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHh--------------CCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcC
Q 012845           44 VPVLIVGAGPVGLVLSILLTK--------------LGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQ  109 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~--------------~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~  109 (455)
                      ..|+|||||++|+-+|..|+.              .+.+|+|+|+.+.+-                   +.+        
T Consensus       174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll-------------------~~~--------  226 (424)
T PTZ00318        174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL-------------------GSF--------  226 (424)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc-------------------ccC--------
Confidence            379999999999999999975              367899998765431                   000        


Q ss_pred             CCcccccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccc
Q 012845          110 PPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGR  189 (455)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~  189 (455)
                                                                 + ..+.+.+.+.+++.|+                   
T Consensus       227 -------------------------------------------~-~~~~~~~~~~L~~~gV-------------------  243 (424)
T PTZ00318        227 -------------------------------------------D-QALRKYGQRRLRRLGV-------------------  243 (424)
T ss_pred             -------------------------------------------C-HHHHHHHHHHHHHCCC-------------------
Confidence                                                       0 1344556666777786                   


Q ss_pred             eEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          190 EILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       190 ~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                      +++.+++|+++..  +.  +.+.   +|+    ++.+|++|.|.|...
T Consensus       244 ~v~~~~~v~~v~~--~~--v~~~---~g~----~i~~d~vi~~~G~~~  280 (424)
T PTZ00318        244 DIRTKTAVKEVLD--KE--VVLK---DGE----VIPTGLVVWSTGVGP  280 (424)
T ss_pred             EEEeCCeEEEEeC--CE--EEEC---CCC----EEEccEEEEccCCCC
Confidence            9999999999864  22  4444   665    789999999999543

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.39  E-value=0.0021  Score=68.19  Aligned_cols=36  Identities=28%  Similarity=0.324  Sum_probs=32.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+.+
T Consensus       312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l  347 (659)
T PTZ00153        312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL  347 (659)
T ss_pred             CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence            358999999999999999999999999999987653

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.39  E-value=0.00023  Score=70.21  Aligned_cols=38  Identities=34%  Similarity=0.420  Sum_probs=34.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ....+|+|||||++|+.+|..|++.|++|+|||+.+.+
T Consensus        16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~   53 (352)
T PRK12770         16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP   53 (352)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            34569999999999999999999999999999998765

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.39  E-value=0.00025  Score=66.55  Aligned_cols=40  Identities=28%  Similarity=0.425  Sum_probs=36.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST   80 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~   80 (455)
                      +...||+|||+|+|||.+|..|+.+|.+|+|+|+..+.+-
T Consensus         3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnl   42 (552)
T COG3573           3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNL   42 (552)
T ss_pred             cccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccc
Confidence            4578999999999999999999999999999999876544

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.34  E-value=0.0018  Score=67.24  Aligned_cols=34  Identities=26%  Similarity=0.320  Sum_probs=31.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+
T Consensus       352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~  385 (515)
T TIGR03140       352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD  385 (515)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence            3589999999999999999999999999998654

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=97.34  E-value=0.00048  Score=67.86  Aligned_cols=69  Identities=16%  Similarity=0.258  Sum_probs=51.8

Q ss_pred             chhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEee
Q 012845          153 SQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGT  232 (455)
Q Consensus       153 ~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~A  232 (455)
                      .-..+.+.|...+++.|+                   +|+++++|+++  +++++.+.+.   ++.   ..+++|.||.|
T Consensus        84 ~A~sVv~~L~~~l~~~gV-------------------~i~~~~~V~~i--~~~~~~v~~~---~~~---~~~~a~~vIlA  136 (376)
T TIGR03862        84 KAAPLLRAWLKRLAEQGV-------------------QFHTRHRWIGW--QGGTLRFETP---DGQ---STIEADAVVLA  136 (376)
T ss_pred             CHHHHHHHHHHHHHHCCC-------------------EEEeCCEEEEE--eCCcEEEEEC---CCc---eEEecCEEEEc
Confidence            456799999999999997                   99999999999  3334555543   222   26899999999


Q ss_pred             cCCCc-----------hhhhhcCCCcc
Q 012845          233 DGAGS-----------TVRKLVGIDLV  248 (455)
Q Consensus       233 dG~~S-----------~vr~~l~~~~~  248 (455)
                      +|..|           .+.+++|....
T Consensus       137 tGG~s~p~~Gs~g~gy~la~~lGh~i~  163 (376)
T TIGR03862       137 LGGASWSQLGSDGAWQQVLDQRGVSVA  163 (376)
T ss_pred             CCCccccccCCCcHHHHHHHHCCCccc
Confidence            99876           46666775544

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=97.33  E-value=0.00016  Score=71.13  Aligned_cols=40  Identities=25%  Similarity=0.413  Sum_probs=34.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAFST   80 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~~~~   80 (455)
                      ....+|+|||||+|||++|..|.+.|+ +|+|+|-.+.+..
T Consensus        19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG   59 (498)
T KOG0685|consen   19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG   59 (498)
T ss_pred             cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence            345689999999999999999997765 6999999887754

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=97.33  E-value=0.0021  Score=61.60  Aligned_cols=34  Identities=21%  Similarity=0.407  Sum_probs=31.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ..+|+|||+|++|+-+|..|++.+.+|+++++.+
T Consensus       141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~  174 (300)
T TIGR01292       141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD  174 (300)
T ss_pred             CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence            4589999999999999999999999999999854

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PLN02546 glutathione reductase

Probab=97.33  E-value=0.0017  Score=67.71  Aligned_cols=35  Identities=23%  Similarity=0.329  Sum_probs=32.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+.
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~  286 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKK  286 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccc
Confidence            46899999999999999999999999999998654

>PRK10262 thioredoxin reductase; Provisional

Probab=97.32  E-value=0.0027  Score=61.78  Aligned_cols=34  Identities=12%  Similarity=0.351  Sum_probs=31.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ..+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus       146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~  179 (321)
T PRK10262        146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD  179 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence            4689999999999999999999999999999865

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.32  E-value=0.0002  Score=72.40  Aligned_cols=37  Identities=30%  Similarity=0.416  Sum_probs=34.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      -.+|+||||||+||++|..|++.|++|+|+|+.+.+.
T Consensus       123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~G  159 (457)
T COG0493         123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDG  159 (457)
T ss_pred             CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCc
Confidence            3789999999999999999999999999999998764

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=97.31  E-value=0.0066  Score=60.88  Aligned_cols=37  Identities=24%  Similarity=0.325  Sum_probs=31.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAFS   79 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~----g~~V~l~Er~~~~~   79 (455)
                      +.++=|||+|+|+|++|.+|-|-    |-+|+|||+.+.+.
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~G   42 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPG   42 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCC
Confidence            35678999999999999999886    57899999987653

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=97.31  E-value=0.00075  Score=59.37  Aligned_cols=44  Identities=27%  Similarity=0.442  Sum_probs=36.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCCCCcccccCh
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTHPQAHFINN   89 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~~~~~~~~~l~~   89 (455)
                      ..||+|||+|-+||++|+..+++  +.+|.|||..-.|   +.|.+|..
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaP---GGGaWLGG  121 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAP---GGGAWLGG  121 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecC---CCcccccc
Confidence            35999999999999999999976  6789999988776   44545543

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.31  E-value=0.00024  Score=73.97  Aligned_cols=38  Identities=32%  Similarity=0.439  Sum_probs=35.0

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +..++|+||||+|.+|+.+|..|+..|++|+|+|+...
T Consensus         4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~   41 (542)
T COG2303           4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGP   41 (542)
T ss_pred             ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCC
Confidence            35689999999999999999999988999999999964

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.28  E-value=0.0003  Score=72.43  Aligned_cols=37  Identities=30%  Similarity=0.493  Sum_probs=33.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...+|+|||||++|+++|..|++.|++|+|||+.+.+
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~  178 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC  178 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            3469999999999999999999999999999998754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.27  E-value=0.00032  Score=73.73  Aligned_cols=37  Identities=24%  Similarity=0.504  Sum_probs=34.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...+|+|||+||+||++|..|++.|++|+|+|+.+.+
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~  172 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL  172 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            4568999999999999999999999999999998765

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.26  E-value=0.01  Score=56.20  Aligned_cols=46  Identities=17%  Similarity=0.222  Sum_probs=37.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCccccc
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFI   87 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l   87 (455)
                      ..+||.+|||||-+||+||...+..|-+|.++|-- .|.+.+..|+|
T Consensus        17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV-~PtP~GtsWGl   62 (503)
T KOG4716|consen   17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFV-KPTPQGTSWGL   62 (503)
T ss_pred             cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeec-ccCCCCCcccc
Confidence            46799999999999999999999999999999954 44444444443

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=97.24  E-value=0.00032  Score=66.27  Aligned_cols=38  Identities=18%  Similarity=0.403  Sum_probs=33.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST   80 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~   80 (455)
                      ...+|+|||+|++||++|+.|++ ..+|+|||.+.....
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~-rhdVTLfEA~~rlGG   44 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSR-RHDVTLFEADRRLGG   44 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhc-ccceEEEeccccccC
Confidence            46799999999999999999998 579999999876643

>PRK13984 putative oxidoreductase; Provisional

Probab=97.08  E-value=0.0006  Score=72.36  Aligned_cols=37  Identities=32%  Similarity=0.484  Sum_probs=34.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...+|+|||+|++|+++|..|++.|++|+|||+.+.+
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~  318 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKP  318 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            4578999999999999999999999999999998765

>TIGR01810 betA choline dehydrogenase

Probab=97.04  E-value=0.00051  Score=71.75  Aligned_cols=33  Identities=30%  Similarity=0.347  Sum_probs=31.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g-~~V~l~Er~~~   77 (455)
                      |+||||||.+|+.+|..|++.| ++|+|+|+.+.
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~   34 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS   34 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence            8999999999999999999998 79999999964

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.04  E-value=0.0052  Score=63.96  Aligned_cols=35  Identities=26%  Similarity=0.292  Sum_probs=31.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|+|||||.+|+-+|..|+..+.+|+|+++.+.
T Consensus       351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~  385 (517)
T PRK15317        351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPE  385 (517)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcc
Confidence            35899999999999999999999999999987654

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.04  E-value=0.0024  Score=63.18  Aligned_cols=59  Identities=29%  Similarity=0.417  Sum_probs=42.7

Q ss_pred             hHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCC
Q 012845          156 KLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGA  235 (455)
Q Consensus       156 ~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~  235 (455)
                      ++.+...+.+++.|+                   .|+.++.|++++.+  +  |++.   +|..   .+.++.+|-|.|.
T Consensus       210 ~l~~~a~~~L~~~GV-------------------~v~l~~~Vt~v~~~--~--v~~~---~g~~---~I~~~tvvWaaGv  260 (405)
T COG1252         210 KLSKYAERALEKLGV-------------------EVLLGTPVTEVTPD--G--VTLK---DGEE---EIPADTVVWAAGV  260 (405)
T ss_pred             HHHHHHHHHHHHCCC-------------------EEEcCCceEEECCC--c--EEEc---cCCe---eEecCEEEEcCCC
Confidence            455667777888887                   99999999999764  3  3433   4431   5899999999997


Q ss_pred             C-chhhhhc
Q 012845          236 G-STVRKLV  243 (455)
Q Consensus       236 ~-S~vr~~l  243 (455)
                      . |++-+.+
T Consensus       261 ~a~~~~~~l  269 (405)
T COG1252         261 RASPLLKDL  269 (405)
T ss_pred             cCChhhhhc
Confidence            6 4455553

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=96.96  E-value=0.0047  Score=60.92  Aligned_cols=33  Identities=21%  Similarity=0.292  Sum_probs=30.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~-V~l~Er~~   76 (455)
                      ..|+|||+|+.|+-+|..|.+.|.+ |+|+++..
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~  206 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT  206 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence            5799999999999999999999997 99998753

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=96.93  E-value=0.032  Score=58.08  Aligned_cols=75  Identities=13%  Similarity=0.219  Sum_probs=56.3

Q ss_pred             cccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCE
Q 012845          150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNI  228 (455)
Q Consensus       150 ~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~  228 (455)
                      ..++-..+...+.+.+.+.|+                   +|+.+++|+++..+++.+. +++....+|.  ...+.++.
T Consensus       123 g~vdp~~l~~al~~~A~~~Ga-------------------~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~--~~~i~a~~  181 (516)
T TIGR03377       123 GTVDPFRLVAANVLDAQEHGA-------------------RIFTYTKVTGLIREGGRVTGVKVEDHKTGE--EERIEAQV  181 (516)
T ss_pred             cEECHHHHHHHHHHHHHHcCC-------------------EEEcCcEEEEEEEECCEEEEEEEEEcCCCc--EEEEEcCE
Confidence            457788899999999999997                   9999999999998766543 4443111232  23789999


Q ss_pred             EEeecCCCch-hhhhcCC
Q 012845          229 LIGTDGAGST-VRKLVGI  245 (455)
Q Consensus       229 vV~AdG~~S~-vr~~l~~  245 (455)
                      ||.|.|.++. +.+..|.
T Consensus       182 VVnAaG~wa~~l~~~~g~  199 (516)
T TIGR03377       182 VINAAGIWAGRIAEYAGL  199 (516)
T ss_pred             EEECCCcchHHHHHhcCC
Confidence            9999999987 5555554

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=96.91  E-value=0.0011  Score=63.58  Aligned_cols=36  Identities=31%  Similarity=0.382  Sum_probs=32.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~   78 (455)
                      +..|.|||+||||..+|..|.++  ++.|+|+|+.+.|
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP   57 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP   57 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence            45899999999999999999884  7899999999876

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=96.84  E-value=0.052  Score=52.86  Aligned_cols=63  Identities=27%  Similarity=0.363  Sum_probs=51.2

Q ss_pred             ccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeC
Q 012845          149 VAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCN  227 (455)
Q Consensus       149 ~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d  227 (455)
                      ...++-..+...|.+.+.+.|+                   +++.+++|++++.+++.+. |.+.   +|     ++.+|
T Consensus       131 ~g~v~p~~l~~~l~~~~~~~g~-------------------~~~~~~~v~~i~~~~~~~~~v~~~---~g-----~~~a~  183 (337)
T TIGR02352       131 DAHVDPRALLKALEKALEKLGV-------------------EIIEHTEVQHIEIRGEKVTAIVTP---SG-----DVQAD  183 (337)
T ss_pred             CceEChHHHHHHHHHHHHHcCC-------------------EEEccceEEEEEeeCCEEEEEEcC---CC-----EEECC
Confidence            3456778899999999999887                   9999999999998777654 3322   44     67899


Q ss_pred             EEEeecCCCch
Q 012845          228 ILIGTDGAGST  238 (455)
Q Consensus       228 ~vV~AdG~~S~  238 (455)
                      .||.|+|.++.
T Consensus       184 ~vV~a~G~~~~  194 (337)
T TIGR02352       184 QVVLAAGAWAG  194 (337)
T ss_pred             EEEEcCChhhh
Confidence            99999999986

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=96.83  E-value=0.00096  Score=71.61  Aligned_cols=37  Identities=32%  Similarity=0.490  Sum_probs=34.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      +-.+|+|||+|||||++|-.|-+.|+.|+||||.+.+
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRV 1820 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCc
Confidence            3479999999999999999999999999999999876

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=96.77  E-value=0.011  Score=60.50  Aligned_cols=34  Identities=18%  Similarity=0.293  Sum_probs=31.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ..+|+|||||..|+-+|..|.+.|.+|+|+++..
T Consensus       272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~  305 (449)
T TIGR01316       272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT  305 (449)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence            3589999999999999999999999999999874

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=96.72  E-value=0.0012  Score=61.88  Aligned_cols=37  Identities=22%  Similarity=0.372  Sum_probs=31.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC-C-CCEEEEcCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKL-G-IKCSVLEKNKA   77 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~-g-~~V~l~Er~~~   77 (455)
                      ..+++|+|||||-+|+.+|..+.+. | -+|-|+|-...
T Consensus        37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~   75 (446)
T KOG3851|consen   37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED   75 (446)
T ss_pred             ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence            5689999999999999999999887 4 46999996543

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=96.62  E-value=0.0025  Score=65.55  Aligned_cols=38  Identities=24%  Similarity=0.337  Sum_probs=35.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~-g~~V~l~Er~~~~   78 (455)
                      ...||.+|||||.||+.+|..|++. .++|+|+|+...+
T Consensus        55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            5689999999999999999999998 7999999999876

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=96.60  E-value=0.018  Score=57.01  Aligned_cols=50  Identities=18%  Similarity=0.383  Sum_probs=36.1

Q ss_pred             HHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          158 NKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       158 ~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                      ...+.+.+++.|+                   +++.++++.+++.  +  .+.+.   +|.    ++.+|.||.|.|...
T Consensus       194 ~~~~~~~l~~~gV-------------------~v~~~~~v~~i~~--~--~v~~~---~g~----~i~~D~vi~a~G~~p  243 (364)
T TIGR03169       194 RRLVLRLLARRGI-------------------EVHEGAPVTRGPD--G--ALILA---DGR----TLPADAILWATGARA  243 (364)
T ss_pred             HHHHHHHHHHCCC-------------------EEEeCCeeEEEcC--C--eEEeC---CCC----EEecCEEEEccCCCh
Confidence            3445666677776                   8999999998853  2  34444   554    789999999999654

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=96.54  E-value=0.018  Score=60.46  Aligned_cols=34  Identities=21%  Similarity=0.392  Sum_probs=31.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ..+|+|||||..|+-+|..|++.|.+|+|+++.+
T Consensus       143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~  176 (555)
T TIGR03143       143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP  176 (555)
T ss_pred             CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence            4689999999999999999999999999999875

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=96.52  E-value=0.0021  Score=62.90  Aligned_cols=36  Identities=25%  Similarity=0.499  Sum_probs=33.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ...+|++|||+|.-||.+|..|++.|.+|.++||+.
T Consensus        12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrh   47 (561)
T KOG4254|consen   12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRH   47 (561)
T ss_pred             CcccceEEecCCccchhHHHHHHhcCcceEEEEEee
Confidence            457999999999999999999999999999999983

>PRK12831 putative oxidoreductase; Provisional

Probab=96.43  E-value=0.031  Score=57.27  Aligned_cols=34  Identities=21%  Similarity=0.317  Sum_probs=31.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ..+|+|||||..|+-+|..|.+.|.+|+|+++..
T Consensus       281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~  314 (464)
T PRK12831        281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS  314 (464)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence            4689999999999999999999999999999764

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=96.42  E-value=0.032  Score=55.47  Aligned_cols=100  Identities=15%  Similarity=0.205  Sum_probs=75.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      .-.|+|||+|..|+-+|..|.-.+.+|+++++.+.+-+                   .+.                    
T Consensus       213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~-------------------~lf--------------------  253 (478)
T KOG1336|consen  213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLP-------------------RLF--------------------  253 (478)
T ss_pred             CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchh-------------------hhh--------------------
Confidence            56799999999999999999999999999998765410                   100                    


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                     -..+.+...+.+++.|+                   +++.++.+.+++.
T Consensus       254 -------------------------------~~~i~~~~~~y~e~kgV-------------------k~~~~t~~s~l~~  283 (478)
T KOG1336|consen  254 -------------------------------GPSIGQFYEDYYENKGV-------------------KFYLGTVVSSLEG  283 (478)
T ss_pred             -------------------------------hHHHHHHHHHHHHhcCe-------------------EEEEecceeeccc
Confidence                                           11344445566677776                   9999999999987


Q ss_pred             cCCc--eEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          203 TDQC--INVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       203 ~~~~--~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      +.++  ..|.+.   +|+    ++.+|+||...|+.+.
T Consensus       284 ~~~Gev~~V~l~---dg~----~l~adlvv~GiG~~p~  314 (478)
T KOG1336|consen  284 NSDGEVSEVKLK---DGK----TLEADLVVVGIGIKPN  314 (478)
T ss_pred             CCCCcEEEEEec---cCC----EeccCeEEEeeccccc
Confidence            6643  445555   776    8899999999997654

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.37  E-value=0.0037  Score=54.00  Aligned_cols=32  Identities=25%  Similarity=0.510  Sum_probs=30.3

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +|.|+|||-.|.++|..|+++|++|+|+.|+.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            58999999999999999999999999999874

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.29  E-value=0.0048  Score=54.55  Aligned_cols=33  Identities=21%  Similarity=0.541  Sum_probs=28.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +|.|||+|..|...|..++++|++|+++|+++.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   33 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            489999999999999999999999999998653

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=96.20  E-value=0.031  Score=57.20  Aligned_cols=34  Identities=15%  Similarity=0.315  Sum_probs=30.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      ..+|+|||||..|+-+|..|.+.|. +|+++++..
T Consensus       273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~  307 (457)
T PRK11749        273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG  307 (457)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            4689999999999999999999998 799999764

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=96.05  E-value=0.0078  Score=60.42  Aligned_cols=40  Identities=23%  Similarity=0.410  Sum_probs=31.2

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      |..+|||+|+|.|+.-+.+|.+|++.|.+|+.+||++--+
T Consensus         1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYG   40 (438)
T PF00996_consen    1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYG   40 (438)
T ss_dssp             --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSC
T ss_pred             CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcC
Confidence            4578999999999999999999999999999999998764

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.98  E-value=0.23  Score=52.34  Aligned_cols=64  Identities=19%  Similarity=0.170  Sum_probs=46.2

Q ss_pred             hhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeec-CCceE-EEEEeccCCcceeEEEEeCEEEee
Q 012845          155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT-DQCIN-VIASFLKEGKCTERNIQCNILIGT  232 (455)
Q Consensus       155 ~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~-~~~~~-v~~~~~~~g~~~~~~~~~d~vV~A  232 (455)
                      ..+...|.+.+.+.|+                   +++.++.++++..+ ++.+. +......+|  ....+.++.||.|
T Consensus       126 ~~i~~~L~~~~~~~gi-------------------~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g--~~~~i~AkaVVLA  184 (570)
T PRK05675        126 HALLHTLYQGNLKNGT-------------------TFLNEWYAVDLVKNQDGAVVGVIAICIETG--ETVYIKSKATVLA  184 (570)
T ss_pred             HHHHHHHHHHHhccCC-------------------EEEECcEEEEEEEcCCCeEEEEEEEEcCCC--cEEEEecCeEEEC
Confidence            5688888888888776                   99999999999875 34443 333211233  3457899999999


Q ss_pred             cCCCchh
Q 012845          233 DGAGSTV  239 (455)
Q Consensus       233 dG~~S~v  239 (455)
                      +|..+.+
T Consensus       185 TGG~~~~  191 (570)
T PRK05675        185 TGGAGRI  191 (570)
T ss_pred             CCCcccc
Confidence            9988854

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=95.91  E-value=0.087  Score=51.70  Aligned_cols=38  Identities=16%  Similarity=0.149  Sum_probs=33.0

Q ss_pred             cCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        39 ~~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ....+.+|||+|.|.+|.++...|-..-++|+|+..+.
T Consensus        51 ~~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRn   88 (491)
T KOG2495|consen   51 NGGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRN   88 (491)
T ss_pred             CCCCCceEEEEcCchHHHHHHHhccccccceEEecccc
Confidence            34568899999999999999999998899999998554

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=95.87  E-value=0.077  Score=54.58  Aligned_cols=34  Identities=15%  Similarity=0.172  Sum_probs=28.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      ..+|+|||||..|+-+|..+.+.|. +|++++...
T Consensus       281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~  315 (471)
T PRK12810        281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP  315 (471)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence            4589999999999999999999886 688766543

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=95.81  E-value=0.087  Score=57.54  Aligned_cols=34  Identities=18%  Similarity=0.305  Sum_probs=31.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~-V~l~Er~~   76 (455)
                      ..+|+|||||..|+-+|..|.+.|.+ |+|+++++
T Consensus       570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~  604 (752)
T PRK12778        570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS  604 (752)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            36899999999999999999999997 99999764

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=95.75  E-value=0.032  Score=55.42  Aligned_cols=37  Identities=19%  Similarity=0.462  Sum_probs=31.4

Q ss_pred             eEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCC
Q 012845          190 EILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGA  235 (455)
Q Consensus       190 ~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~  235 (455)
                      .+++++.|+.++.....  +.+.   +|.    ++.++.+|.|+|.
T Consensus       143 e~~~~t~v~~~D~~~K~--l~~~---~Ge----~~kys~LilATGs  179 (478)
T KOG1336|consen  143 ELILGTSVVKADLASKT--LVLG---NGE----TLKYSKLIIATGS  179 (478)
T ss_pred             eEEEcceeEEeeccccE--EEeC---CCc----eeecceEEEeecC
Confidence            89999999999987765  4444   665    8899999999998

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=95.74  E-value=0.095  Score=56.17  Aligned_cols=34  Identities=18%  Similarity=0.338  Sum_probs=30.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      ..+|+|||||..|+-+|..|.+.|. +|+|+++..
T Consensus       323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~  357 (652)
T PRK12814        323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT  357 (652)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            4689999999999999999999997 599998765

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.74  E-value=0.011  Score=56.42  Aligned_cols=35  Identities=26%  Similarity=0.446  Sum_probs=32.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      .+|.|||+|..|...|..|+++|++|+++|+++..
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~   40 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL   40 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            37999999999999999999999999999988653

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.72  E-value=0.012  Score=56.50  Aligned_cols=36  Identities=19%  Similarity=0.273  Sum_probs=32.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ...+|.|||+|..|..+|..|+++|++|+++|+++.
T Consensus         3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (292)
T PRK07530          3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD   38 (292)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            345799999999999999999999999999998753

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=95.68  E-value=0.042  Score=53.51  Aligned_cols=48  Identities=15%  Similarity=0.257  Sum_probs=37.7

Q ss_pred             eEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCC--CchhhhhcC
Q 012845          190 EILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGA--GSTVRKLVG  244 (455)
Q Consensus       190 ~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~--~S~vr~~l~  244 (455)
                      .|+-+..|.++......+.+.+.   +|.    ++..|+||.|.|.  ||.+...-|
T Consensus       409 ~V~pna~v~sv~~~~~nl~lkL~---dG~----~l~tD~vVvavG~ePN~ela~~sg  458 (659)
T KOG1346|consen  409 DVRPNAKVESVRKCCKNLVLKLS---DGS----ELRTDLVVVAVGEEPNSELAEASG  458 (659)
T ss_pred             eeccchhhhhhhhhccceEEEec---CCC----eeeeeeEEEEecCCCchhhccccc
Confidence            88888888888877777777777   887    8899999999994  565555444

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=95.67  E-value=0.11  Score=58.42  Aligned_cols=34  Identities=9%  Similarity=0.135  Sum_probs=30.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~-V~l~Er~~   76 (455)
                      ..+|+|||+|+.|+-+|..|++.|.+ |+|+|+.+
T Consensus       317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~  351 (985)
T TIGR01372       317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARA  351 (985)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCc
Confidence            36899999999999999999999964 89998753

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=95.65  E-value=0.015  Score=56.38  Aligned_cols=35  Identities=20%  Similarity=0.424  Sum_probs=31.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      .+.+|+|||+|-.|.++|..|++.|++|+++.|+.
T Consensus         4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            34579999999999999999999999999999863

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.62  E-value=0.015  Score=56.19  Aligned_cols=34  Identities=12%  Similarity=0.168  Sum_probs=31.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..|.|||+|..|...|..|+.+|++|+++|+.+.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~   41 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG   41 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4699999999999999999999999999998764

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=95.60  E-value=0.04  Score=57.60  Aligned_cols=34  Identities=24%  Similarity=0.414  Sum_probs=30.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +...+|||||+=||=+|..|.+.|.+|+|++-.+
T Consensus       145 ~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~  178 (793)
T COG1251         145 KKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAP  178 (793)
T ss_pred             cCCcEEEccchhhhHHHHHHHhCCCceEEEeecc
Confidence            3457999999999999999999999999998654

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.58  E-value=0.013  Score=56.62  Aligned_cols=33  Identities=27%  Similarity=0.543  Sum_probs=31.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +|.|||+|..|..+|..|+++|++|+++|+++.
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            599999999999999999999999999998854

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.48  E-value=0.016  Score=59.47  Aligned_cols=34  Identities=24%  Similarity=0.377  Sum_probs=31.7

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      +|+|||.|++|+++|..|++.|++|+++|++..+
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            5899999999999999999999999999988664

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.46  E-value=0.017  Score=59.55  Aligned_cols=34  Identities=24%  Similarity=0.452  Sum_probs=31.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ..+|+|||+|.+|+.+|..|+++|++|+++|+.+
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4579999999999999999999999999999765

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=95.37  E-value=0.1  Score=51.19  Aligned_cols=47  Identities=21%  Similarity=0.333  Sum_probs=31.9

Q ss_pred             eEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc-hhhhhc
Q 012845          190 EILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS-TVRKLV  243 (455)
Q Consensus       190 ~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S-~vr~~l  243 (455)
                      .+..++.|..+..+  .+.+.+.   +|+  .+++.+-++|.|+|... ++-+.+
T Consensus       289 ~~~~~t~Vk~V~~~--~I~~~~~---~g~--~~~iPYG~lVWatG~~~rp~~k~l  336 (491)
T KOG2495|consen  289 DLDTGTMVKKVTEK--TIHAKTK---DGE--IEEIPYGLLVWATGNGPRPVIKDL  336 (491)
T ss_pred             eeecccEEEeecCc--EEEEEcC---CCc--eeeecceEEEecCCCCCchhhhhH
Confidence            89999999998643  3333333   444  35788999999999764 344444

>TIGR02734 crtI_fam phytoene desaturase

Probab=95.36  E-value=3.2  Score=42.96  Aligned_cols=63  Identities=17%  Similarity=0.260  Sum_probs=48.4

Q ss_pred             hhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCc-eEEEEEeccCCcceeEEEEeCEEEeec
Q 012845          155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCNILIGTD  233 (455)
Q Consensus       155 ~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~-~~v~~~~~~~g~~~~~~~~~d~vV~Ad  233 (455)
                      ..+.+.|.+.+++.|+                   +|++++.|++|..+++. +.|.+.   +|.    ++.+|.||.|.
T Consensus       219 ~~l~~al~~~~~~~G~-------------------~i~~~~~V~~i~~~~~~~~~V~~~---~g~----~~~ad~VI~a~  272 (502)
T TIGR02734       219 GALVAAMAKLAEDLGG-------------------ELRLNAEVIRIETEGGRATAVHLA---DGE----RLDADAVVSNA  272 (502)
T ss_pred             HHHHHHHHHHHHHCCC-------------------EEEECCeEEEEEeeCCEEEEEEEC---CCC----EEECCEEEECC
Confidence            5677888888888876                   99999999999877665 335544   554    67999999998


Q ss_pred             CCCchhhhhc
Q 012845          234 GAGSTVRKLV  243 (455)
Q Consensus       234 G~~S~vr~~l  243 (455)
                      +....+...+
T Consensus       273 ~~~~~~~~l~  282 (502)
T TIGR02734       273 DLHHTYRRLL  282 (502)
T ss_pred             cHHHHHHHhc
Confidence            8776665555

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.34  E-value=0.022  Score=48.60  Aligned_cols=31  Identities=26%  Similarity=0.599  Sum_probs=29.4

Q ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        46 VvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      |+|+|+|-.|+..|..|++.|++|+++.|..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            7899999999999999999999999999875

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.32  E-value=0.16  Score=48.49  Aligned_cols=35  Identities=20%  Similarity=0.246  Sum_probs=32.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      ...||.+|||||-.|++.|...+.+|.+|.|+|-.
T Consensus        18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~   52 (478)
T KOG0405|consen   18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELP   52 (478)
T ss_pred             ccccceEEEcCCcchhHHhHHHHhcCceEEEEecC
Confidence            45899999999999999999999999999999954

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.28  E-value=0.021  Score=52.43  Aligned_cols=34  Identities=24%  Similarity=0.490  Sum_probs=32.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      +++|||+|..|..+|..|.+.|++|+++|+++..
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~   35 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEER   35 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHH
Confidence            6999999999999999999999999999998754

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=95.08  E-value=0.83  Score=45.82  Aligned_cols=44  Identities=16%  Similarity=0.272  Sum_probs=33.0

Q ss_pred             cceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          188 GREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       188 ~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                      +++|+++++|++|+.+++++.+.+.  .+|.    ++.+|.||.|.-...
T Consensus       211 g~~i~~~~~V~~i~~~~~~~~~~~~--~~g~----~~~~d~vi~a~p~~~  254 (419)
T TIGR03467       211 GGEVRLGTRVRSIEANAGGIRALVL--SGGE----TLPADAVVLAVPPRH  254 (419)
T ss_pred             CCEEEcCCeeeEEEEcCCcceEEEe--cCCc----cccCCEEEEcCCHHH
Confidence            5699999999999988887665443  1343    678999999866443

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.05  E-value=0.028  Score=57.40  Aligned_cols=35  Identities=40%  Similarity=0.584  Sum_probs=32.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ...+|+|||+|.+|+.+|..|++.|++|+++|+..
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            45789999999999999999999999999999875

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.02  E-value=0.028  Score=53.74  Aligned_cols=34  Identities=18%  Similarity=0.329  Sum_probs=31.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .+|.|||+|..|..+|..|+++|++|+++|+++.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE   37 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            3699999999999999999999999999997643

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.98  E-value=0.026  Score=53.95  Aligned_cols=33  Identities=18%  Similarity=0.470  Sum_probs=30.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +|.|||+|..|..+|..|+++|++|+++|+++.
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   35 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE   35 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence            599999999999999999999999999998754

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=94.89  E-value=0.025  Score=50.18  Aligned_cols=33  Identities=24%  Similarity=0.425  Sum_probs=27.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +|.|||.|-.||.+|..|++.|++|+.+|.++.
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            699999999999999999999999999998753

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.85  E-value=0.54  Score=46.16  Aligned_cols=48  Identities=13%  Similarity=0.093  Sum_probs=38.0

Q ss_pred             cceEEeccEEEEeeecCCc-eEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          188 GREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       188 ~~~i~~~~~v~~i~~~~~~-~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                      ++.+.-+++|.+++..+++ +.+.+..  ..++..++++.|.||.|+|..-
T Consensus       292 ~v~l~~~~ev~~~~~~G~g~~~l~~~~--~~~~~~~t~~~D~vIlATGY~~  340 (436)
T COG3486         292 DVRLLSLSEVQSVEPAGDGRYRLTLRH--HETGELETVETDAVILATGYRR  340 (436)
T ss_pred             CeeeccccceeeeecCCCceEEEEEee--ccCCCceEEEeeEEEEeccccc
Confidence            3588899999999998877 6677664  3344456889999999999873

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.68  E-value=0.036  Score=53.09  Aligned_cols=34  Identities=15%  Similarity=0.405  Sum_probs=31.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE   37 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            4699999999999999999999999999998753

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=94.57  E-value=0.042  Score=52.76  Aligned_cols=34  Identities=29%  Similarity=0.433  Sum_probs=31.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .+|.|||+|..|...|..|+++|++|.++|+++.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~   38 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA   38 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            4699999999999999999999999999998754

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=94.56  E-value=0.045  Score=52.77  Aligned_cols=33  Identities=21%  Similarity=0.489  Sum_probs=30.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      .+|+|||+|-.|...|..|++.|.+|+++.|..
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            469999999999999999999999999999864

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.55  E-value=0.044  Score=53.00  Aligned_cols=34  Identities=21%  Similarity=0.482  Sum_probs=31.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .+|.|||+|..|..+|..|++.|++|+++|++..
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~   38 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEG   38 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            4699999999999999999999999999997653

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.53  E-value=0.24  Score=53.23  Aligned_cols=35  Identities=11%  Similarity=0.201  Sum_probs=30.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~   77 (455)
                      ..+|+|||||..|+-+|..+.+.|. +|+++.+++.
T Consensus       468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~  503 (654)
T PRK12769        468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDE  503 (654)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCC
Confidence            3589999999999999999999997 6999887643

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=94.52  E-value=0.3  Score=50.18  Aligned_cols=35  Identities=14%  Similarity=0.224  Sum_probs=31.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~   77 (455)
                      ..+|+|||+|..|+-+|..+.+.|. +|+|+++.+.
T Consensus       282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~  317 (467)
T TIGR01318       282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE  317 (467)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence            4689999999999999999999996 6999998653

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=94.30  E-value=0.42  Score=53.32  Aligned_cols=34  Identities=15%  Similarity=0.303  Sum_probs=31.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ..+|+|||||..|+-+|..+.+.|.+|+++.+++
T Consensus       447 Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~  480 (944)
T PRK12779        447 GKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT  480 (944)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence            4689999999999999999999999999998764

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=94.26  E-value=0.049  Score=52.38  Aligned_cols=32  Identities=22%  Similarity=0.494  Sum_probs=30.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +|+|||+|-.|.++|..|++.|++|++++|+.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            59999999999999999999999999999853

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=94.26  E-value=0.053  Score=56.08  Aligned_cols=36  Identities=17%  Similarity=0.366  Sum_probs=32.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      -..|.|||+|..|...|..|+++|++|+++|+++..
T Consensus         7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~   42 (507)
T PRK08268          7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGA   42 (507)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            356999999999999999999999999999988653

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=94.22  E-value=0.056  Score=52.03  Aligned_cols=30  Identities=30%  Similarity=0.429  Sum_probs=29.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEK   74 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er   74 (455)
                      +|+|||+|..|.++|..|++.|++|++++|
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            599999999999999999999999999998

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=94.22  E-value=0.074  Score=48.00  Aligned_cols=33  Identities=36%  Similarity=0.476  Sum_probs=30.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      ...|+|||||.+|...+..|.+.|.+|+|++..
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~   41 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE   41 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            458999999999999999999999999999864

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.18  E-value=0.056  Score=51.49  Aligned_cols=33  Identities=18%  Similarity=0.356  Sum_probs=30.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~   37 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA   37 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence            599999999999999999999999999998754

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=94.18  E-value=0.073  Score=45.84  Aligned_cols=32  Identities=22%  Similarity=0.272  Sum_probs=29.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEc
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLE   73 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~E   73 (455)
                      ....|+|||||..|..-|..|.+.|.+|+|+.
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            45789999999999999999999999999995

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=94.08  E-value=0.038  Score=43.86  Aligned_cols=35  Identities=34%  Similarity=0.458  Sum_probs=31.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +...|+|||||..|..-+..|.+.|.+|+|+.+..
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            46789999999999999999999999999998763

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=94.06  E-value=0.059  Score=55.68  Aligned_cols=33  Identities=18%  Similarity=0.298  Sum_probs=30.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~   38 (495)
T PRK07531          6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE   38 (495)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            699999999999999999999999999998654

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=94.04  E-value=0.065  Score=52.54  Aligned_cols=31  Identities=23%  Similarity=0.468  Sum_probs=29.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      +|.|||+|..|...|..|+++|++|++++|.
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~   34 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA   34 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence            5999999999999999999999999999974

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=93.99  E-value=0.081  Score=47.56  Aligned_cols=34  Identities=29%  Similarity=0.443  Sum_probs=31.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKN   75 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~   75 (455)
                      .+.+|+|||+|-.|...|..|++.|+ +++|+|.+
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            35789999999999999999999999 59999977

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=93.98  E-value=0.07  Score=46.54  Aligned_cols=35  Identities=26%  Similarity=0.369  Sum_probs=30.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      .+..|+|+|+|.+|..+|..|...|.+|+++|..+
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            35789999999999999999999999999999764

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.97  E-value=0.074  Score=51.86  Aligned_cols=32  Identities=25%  Similarity=0.489  Sum_probs=30.4

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +|.|||+|..|.+.|..|++.|++|++++|++
T Consensus         6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            69999999999999999999999999999864

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=93.93  E-value=0.059  Score=54.33  Aligned_cols=34  Identities=15%  Similarity=0.244  Sum_probs=31.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .+|.|||.|-.|+.+|..|+++|++|+++|+++.
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            4699999999999999999999999999998754

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=93.92  E-value=0.64  Score=44.68  Aligned_cols=37  Identities=19%  Similarity=0.433  Sum_probs=33.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...+|+|||||-+.+--|+.|++.+-+|+|+=|++..
T Consensus       142 ~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~  178 (305)
T COG0492         142 KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEF  178 (305)
T ss_pred             cCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCccc
Confidence            4459999999999999999999999999999998765

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=93.84  E-value=0.092  Score=47.29  Aligned_cols=34  Identities=32%  Similarity=0.374  Sum_probs=30.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      ....|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            4568999999999999999999999999999853

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=93.79  E-value=0.074  Score=47.58  Aligned_cols=38  Identities=24%  Similarity=0.394  Sum_probs=34.2

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      |.....|.|||+|..|.-.|...+..|++|.|+|++..
T Consensus         8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~   45 (298)
T KOG2304|consen    8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED   45 (298)
T ss_pred             cccccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence            34567899999999999999999999999999998864

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=93.68  E-value=0.072  Score=47.71  Aligned_cols=35  Identities=20%  Similarity=0.361  Sum_probs=29.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ...+|+|||+|.++.-+|..|++.|-+|+++=|.+
T Consensus       166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~  200 (203)
T PF13738_consen  166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP  200 (203)
T ss_dssp             TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred             CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence            45789999999999999999999999999998875

...

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=93.66  E-value=0.49  Score=47.72  Aligned_cols=37  Identities=24%  Similarity=0.344  Sum_probs=31.1

Q ss_pred             CcEEEEcCccccCCCC-cCccchhhHHHHHHHHHHHHH
Q 012845          359 NQIILAGDACHRFPPA-GGFGMNTGVQDAHNLAWKIAS  395 (455)
Q Consensus       359 ~~vvliGDAAh~~~P~-~G~G~~~Al~da~~La~~L~~  395 (455)
                      .|+..+|+...-.+|. -|.|-..|+..|...++.+.+
T Consensus       381 ~nl~a~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~~~  418 (422)
T PRK05329        381 ENLYAAGAVLGGYDPIREGCGSGVALATALHAAEQIAE  418 (422)
T ss_pred             cceEEeeehhcCCchHHhCCCchhHHHHHHHHHHHHHH
Confidence            7999999998888876 667777889999999988765

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.52  E-value=0.095  Score=50.63  Aligned_cols=35  Identities=26%  Similarity=0.354  Sum_probs=32.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|.|||+|-.|.++|..|++.|++|++++|+..
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~   38 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG   38 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            34699999999999999999999999999999754

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=93.43  E-value=0.08  Score=54.64  Aligned_cols=35  Identities=20%  Similarity=0.358  Sum_probs=32.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      .+|.|||+|..|...|..|+++|++|+++|+++..
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~   40 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEA   40 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            45999999999999999999999999999988653

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.33  E-value=0.097  Score=51.00  Aligned_cols=32  Identities=28%  Similarity=0.513  Sum_probs=30.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +|.|||+|-.|.++|..|++.|++|+++.|+.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            49999999999999999999999999999864

>TIGR00518 alaDH alanine dehydrogenase

Probab=93.33  E-value=0.096  Score=51.91  Aligned_cols=34  Identities=29%  Similarity=0.407  Sum_probs=31.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ..+|+|||+|.+|+.+|..|.+.|.+|+++|++.
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4579999999999999999999999999999864

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=93.30  E-value=0.14  Score=42.77  Aligned_cols=35  Identities=26%  Similarity=0.446  Sum_probs=32.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~-V~l~Er~~   76 (455)
                      ....|+|||+|-+|-+++..|+..|.+ |+|+-|+.
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            457899999999999999999999998 99999874

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=93.29  E-value=0.1  Score=50.39  Aligned_cols=33  Identities=39%  Similarity=0.477  Sum_probs=30.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~~   77 (455)
                      +|.|||+|..|.++|+.|++.|.  +|.++|++..
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~   36 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA   36 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence            59999999999999999999994  7999998754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=93.28  E-value=0.083  Score=44.23  Aligned_cols=32  Identities=31%  Similarity=0.530  Sum_probs=28.3

Q ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        46 VvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ++|+|+|+.+.++|..++..|++|+|+|.++.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            58999999999999999999999999998865

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=93.26  E-value=0.85  Score=50.86  Aligned_cols=35  Identities=20%  Similarity=0.343  Sum_probs=30.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhC-CC-CEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKL-GI-KCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~-g~-~V~l~Er~~   76 (455)
                      ...+|+|||||..|+-+|..+.+. |. +|+|++|+.
T Consensus       665 ~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~  701 (1012)
T TIGR03315       665 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  701 (1012)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence            356899999999999999999886 86 799999875

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK04148 hypothetical protein; Provisional

Probab=93.25  E-value=0.07  Score=44.27  Aligned_cols=33  Identities=18%  Similarity=0.306  Sum_probs=30.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .+|++||.| .|...|..|++.|++|+.+|.++.
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            579999999 999999999999999999998754

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=93.25  E-value=9.3  Score=39.32  Aligned_cols=32  Identities=19%  Similarity=0.099  Sum_probs=26.8

Q ss_pred             CcEEEEcCccccCCCCcCccchhhHHHHHHHHHHH
Q 012845          359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKI  393 (455)
Q Consensus       359 ~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L  393 (455)
                      .+++|.||--..--|   .+|+-|+..+..+|+.|
T Consensus       442 ~~l~lAGD~t~~~~p---as~egAv~sG~~aA~~i  473 (474)
T TIGR02732       442 SNFFLAGSYTQQDYI---DSMEGATLSGRQAAAAI  473 (474)
T ss_pred             CCeEEeccccccCch---HHHhHHHHHHHHHHHHh
Confidence            799999998876666   48999999999888765

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=93.24  E-value=0.12  Score=44.96  Aligned_cols=35  Identities=29%  Similarity=0.300  Sum_probs=31.4

Q ss_pred             CcccCEEEECCCH-HHHHHHHHHHhCCCCEEEEcCC
Q 012845           41 EAVVPVLIVGAGP-VGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        41 ~~~~dVvIVGgG~-aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      -...+|+|||+|- +|..+|..|.+.|.+|+++.|+
T Consensus        42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            3568999999995 7999999999999999999986

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=93.13  E-value=0.072  Score=48.87  Aligned_cols=33  Identities=18%  Similarity=0.337  Sum_probs=26.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~   77 (455)
                      +.+|||||+||.+||-.|+++  .-+|+|+-..+.
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~   35 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF   35 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence            368999999999999999988  456888775543

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=93.09  E-value=0.13  Score=49.53  Aligned_cols=34  Identities=21%  Similarity=0.336  Sum_probs=30.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~   77 (455)
                      .+|.|||+|..|+..|..|+..|+ +|.++|....
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~   36 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG   36 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence            369999999999999999999887 8999998533

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=93.09  E-value=0.14  Score=41.37  Aligned_cols=32  Identities=28%  Similarity=0.540  Sum_probs=28.6

Q ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        46 VvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      |+|||.|..|..++..|.+.+++|+++|+++.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence            79999999999999999998889999998853

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PLN02852 ferredoxin-NADP+ reductase

Probab=93.06  E-value=1.2  Score=45.94  Aligned_cols=23  Identities=22%  Similarity=0.338  Sum_probs=20.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKL   65 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~   65 (455)
                      ..+|+|||+|..|+-+|..|.+.
T Consensus       166 gk~VvVIGgGnvAlD~Ar~L~~~  188 (491)
T PLN02852        166 SDTAVVLGQGNVALDCARILLRP  188 (491)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC
Confidence            35899999999999999999876

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=93.00  E-value=0.096  Score=53.78  Aligned_cols=35  Identities=26%  Similarity=0.355  Sum_probs=32.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|+|+|+|++|+.++..++..|.+|.++|+++.
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~  199 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE  199 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            56899999999999999999999999999998754

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=92.93  E-value=0.15  Score=49.43  Aligned_cols=37  Identities=16%  Similarity=0.349  Sum_probs=32.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~~   78 (455)
                      ...+|+|||+|-.|..+|+.|+..|+ +|.|+|.++..
T Consensus         5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~   42 (321)
T PTZ00082          5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI   42 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence            44689999999999999999999996 89999987654

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=92.92  E-value=0.11  Score=49.41  Aligned_cols=32  Identities=28%  Similarity=0.377  Sum_probs=29.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +|.|||.|..|.++|..|+++|++|.++++++
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            59999999999999999999999999999864

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=92.92  E-value=0.13  Score=44.52  Aligned_cols=34  Identities=21%  Similarity=0.431  Sum_probs=29.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .+|.|||-|-.|..+|..|.++|++|.+|||++.
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~   35 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPE   35 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchh
Confidence            3699999999999999999999999999998853

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=92.91  E-value=0.61  Score=46.60  Aligned_cols=34  Identities=26%  Similarity=0.584  Sum_probs=28.1

Q ss_pred             EEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCC
Q 012845           46 VLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFS   79 (455)
Q Consensus        46 VvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~~   79 (455)
                      ++|||+|++|+.+|..|.+.  +.+|+++.+.....
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~   36 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYS   36 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCC
Confidence            58999999999999999886  46788888776543

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=92.90  E-value=0.13  Score=42.99  Aligned_cols=34  Identities=32%  Similarity=0.519  Sum_probs=30.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      +.+|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            4679999999999999999999999 599999764

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=92.84  E-value=0.16  Score=47.78  Aligned_cols=36  Identities=25%  Similarity=0.409  Sum_probs=31.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~   77 (455)
                      .+..|+|||+|-.|..+|..|++.|+ +++|+|.+..
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V   65 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV   65 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence            45789999999999999999999996 6999997643

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=92.80  E-value=0.13  Score=49.93  Aligned_cols=32  Identities=25%  Similarity=0.542  Sum_probs=30.3

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +|.|||+|..|..+|..|++.|++|++++|++
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            59999999999999999999999999999864

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=92.74  E-value=0.11  Score=52.42  Aligned_cols=33  Identities=30%  Similarity=0.565  Sum_probs=31.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +|.|||.|-.|+.+|..|++.|++|+++|+++.
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            599999999999999999999999999998764

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=92.61  E-value=0.18  Score=48.80  Aligned_cols=37  Identities=30%  Similarity=0.477  Sum_probs=32.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA   77 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~~   77 (455)
                      ....+|+|||+|-.|.++|+.|+..|+  ++.|||.+..
T Consensus         4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~   42 (315)
T PRK00066          4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE   42 (315)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence            345799999999999999999999998  7999998644

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=92.58  E-value=0.2  Score=48.29  Aligned_cols=39  Identities=26%  Similarity=0.373  Sum_probs=36.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST   80 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~   80 (455)
                      ..+||+|+|.|+.-+.++.+|+..|.+|+.|||++.-+.
T Consensus         5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~   43 (434)
T COG5044           5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGS   43 (434)
T ss_pred             ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCc
Confidence            479999999999999999999999999999999987654

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=92.51  E-value=15  Score=38.02  Aligned_cols=61  Identities=15%  Similarity=0.237  Sum_probs=43.1

Q ss_pred             hhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceE-EEEEeccCC-cceeEEEEeCEEEee
Q 012845          155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEG-KCTERNIQCNILIGT  232 (455)
Q Consensus       155 ~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g-~~~~~~~~~d~vV~A  232 (455)
                      ..|.+.|.+.+++.|+                   +|+++++|++|..+++... +.+.   ++ ++..+.+.+|.||.+
T Consensus       232 ~~l~~aL~~~~~~~G~-------------------~i~~~~~V~~I~~~~~~~~gv~~~---~~~~~~~~~~~ad~VI~~  289 (492)
T TIGR02733       232 QTLSDRLVEALKRDGG-------------------NLLTGQRVTAIHTKGGRAGWVVVV---DSRKQEDLNVKADDVVAN  289 (492)
T ss_pred             HHHHHHHHHHHHhcCC-------------------EEeCCceEEEEEEeCCeEEEEEEe---cCCCCceEEEECCEEEEC
Confidence            4578888888888775                   9999999999998776432 3333   32 121236789999988


Q ss_pred             cCCCc
Q 012845          233 DGAGS  237 (455)
Q Consensus       233 dG~~S  237 (455)
                      .-...
T Consensus       290 ~~~~~  294 (492)
T TIGR02733       290 LPPQS  294 (492)
T ss_pred             CCHHH
Confidence            77643

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=92.32  E-value=1.3  Score=49.35  Aligned_cols=34  Identities=21%  Similarity=0.308  Sum_probs=29.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC-C-CCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKL-G-IKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~-g-~~V~l~Er~~   76 (455)
                      ..+|+|||||..|+-+|..+.+. | .+|+|+.|++
T Consensus       668 GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~  703 (1019)
T PRK09853        668 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  703 (1019)
T ss_pred             CCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence            46899999999999999999887 5 3799999875

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=92.29  E-value=0.19  Score=49.13  Aligned_cols=35  Identities=34%  Similarity=0.511  Sum_probs=32.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      .+..|+|||+|-.|..+|..|++.|+ +++|+|++.
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            35689999999999999999999998 799999875

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=92.28  E-value=1.1  Score=50.36  Aligned_cols=34  Identities=18%  Similarity=0.288  Sum_probs=29.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKN   75 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~-V~l~Er~   75 (455)
                      ...+|+|||||..|+-+|..+.+.|.+ |+++.|+
T Consensus       570 ~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr  604 (1006)
T PRK12775        570 LGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR  604 (1006)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence            346899999999999999999999985 7777654

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=92.25  E-value=0.13  Score=55.52  Aligned_cols=35  Identities=17%  Similarity=0.226  Sum_probs=32.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..|.|||+|..|...|..++++|++|+++|.++..
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~  348 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKA  348 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            46999999999999999999999999999987543

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=92.23  E-value=0.21  Score=42.17  Aligned_cols=33  Identities=36%  Similarity=0.668  Sum_probs=29.5

Q ss_pred             CEEEECC-CHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 012845           45 PVLIVGA-GPVGLVLSILLTKLGI--KCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGg-G~aGl~~A~~La~~g~--~V~l~Er~~~   77 (455)
                      +|.|||+ |-.|.++|+.|...++  ++.|+|++..
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~   37 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED   37 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc
Confidence            6999999 9999999999999975  6999998743

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=92.14  E-value=0.17  Score=50.66  Aligned_cols=35  Identities=23%  Similarity=0.206  Sum_probs=31.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ...|+|+|+|+.|+.+|..|+..|.+|+++|+++.
T Consensus       202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~  236 (413)
T cd00401         202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI  236 (413)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            45899999999999999999999999999998653

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.13  E-value=0.21  Score=50.98  Aligned_cols=36  Identities=19%  Similarity=0.315  Sum_probs=32.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...|+|+|.|.+|.++|..|+++|++|+++|..+.+
T Consensus         5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~   40 (445)
T PRK04308          5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP   40 (445)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence            457999999999999999999999999999977653

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=92.11  E-value=0.75  Score=46.10  Aligned_cols=69  Identities=13%  Similarity=0.209  Sum_probs=51.8

Q ss_pred             cchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEe
Q 012845          152 FSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIG  231 (455)
Q Consensus       152 i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~  231 (455)
                      +.-..|.+.|.+.+++.|+                   ++..+++|.++..+++.+....+  +++.  +..+++|.+|.
T Consensus       260 v~G~RL~~aL~~~~~~~Gg-------------------~il~g~~V~~i~~~~~~v~~V~t--~~g~--~~~l~AD~vVL  316 (419)
T TIGR03378       260 LLGIRLEEALKHRFEQLGG-------------------VMLPGDRVLRAEFEGNRVTRIHT--RNHR--DIPLRADHFVL  316 (419)
T ss_pred             CcHHHHHHHHHHHHHHCCC-------------------EEEECcEEEEEEeeCCeEEEEEe--cCCc--cceEECCEEEE
Confidence            3456788889999999987                   89999999999988877664332  1331  12789999999


Q ss_pred             ecCCC-ch-hhhhc
Q 012845          232 TDGAG-ST-VRKLV  243 (455)
Q Consensus       232 AdG~~-S~-vr~~l  243 (455)
                      |+|.+ |. +.+.+
T Consensus       317 AaGaw~S~gL~a~l  330 (419)
T TIGR03378       317 ASGSFFSNGLVAEF  330 (419)
T ss_pred             ccCCCcCHHHHhhc
Confidence            99999 75 44444

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=92.08  E-value=0.24  Score=44.62  Aligned_cols=35  Identities=26%  Similarity=0.488  Sum_probs=31.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      .+.+|+|||.|-.|..+|..|++.|+ +++|+|.+.
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~   55 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH   55 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            46789999999999999999999998 799999764

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=91.96  E-value=0.17  Score=54.57  Aligned_cols=36  Identities=19%  Similarity=0.206  Sum_probs=32.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      -..|.|||+|..|...|..++++|++|+++|.+...
T Consensus       313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~  348 (714)
T TIGR02437       313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHS  348 (714)
T ss_pred             cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            346999999999999999999999999999988653

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=91.94  E-value=0.42  Score=49.76  Aligned_cols=36  Identities=25%  Similarity=0.369  Sum_probs=30.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ...+|+|||+|.+|.=.|..|++..-+|.+.=|+..
T Consensus       182 ~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~  217 (531)
T PF00743_consen  182 KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGA  217 (531)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---
T ss_pred             CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccc
Confidence            357899999999999999999999999999888753

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.88  E-value=0.22  Score=50.86  Aligned_cols=35  Identities=29%  Similarity=0.377  Sum_probs=31.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ...|+|+|+|.+|.++|..|++.|.+|.+.|++..
T Consensus         5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~   39 (447)
T PRK02472          5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF   39 (447)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence            35699999999999999999999999999997653

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=91.81  E-value=0.18  Score=48.20  Aligned_cols=33  Identities=30%  Similarity=0.347  Sum_probs=30.5

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +|.|||.|..|..+|..|++.|++|++++|++.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~   33 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPE   33 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            489999999999999999999999999998753

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK06223 malate dehydrogenase; Reviewed

Probab=91.78  E-value=0.22  Score=48.02  Aligned_cols=34  Identities=26%  Similarity=0.413  Sum_probs=30.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~   77 (455)
                      .+|+|||+|..|..+|..|+..|+ +|.++|.+..
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~   37 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG   37 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence            479999999999999999999876 9999998654

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=91.66  E-value=0.22  Score=45.50  Aligned_cols=32  Identities=25%  Similarity=0.388  Sum_probs=29.2

Q ss_pred             CEEEEC-CCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           45 PVLIVG-AGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        45 dVvIVG-gG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +|.||| +|..|.++|..|++.|++|.+++|++
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            599997 79999999999999999999998764

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=91.65  E-value=0.18  Score=54.63  Aligned_cols=35  Identities=20%  Similarity=0.299  Sum_probs=32.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..|.|||+|..|...|..++.+|++|+++|.++..
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~  370 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAG  370 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHH
Confidence            46999999999999999999999999999988653

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=91.65  E-value=0.23  Score=49.34  Aligned_cols=34  Identities=35%  Similarity=0.667  Sum_probs=31.1

Q ss_pred             cccCEEEEC-CCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           42 AVVPVLIVG-AGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        42 ~~~dVvIVG-gG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      ....|+||| .|..|.++|..|+++|++|++++++
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~  131 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD  131 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence            346799999 8999999999999999999999985

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=91.47  E-value=0.26  Score=48.12  Aligned_cols=35  Identities=29%  Similarity=0.580  Sum_probs=32.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      .+.+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            35789999999999999999999999 799999864

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=91.41  E-value=0.24  Score=47.38  Aligned_cols=34  Identities=18%  Similarity=0.333  Sum_probs=31.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..|.|||||..|.-.|..++..|++|+++|.+..
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~   37 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPE   37 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhhcCCceEEEeCCHH
Confidence            5799999999999999999998899999998843

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=91.26  E-value=0.26  Score=47.58  Aligned_cols=33  Identities=33%  Similarity=0.567  Sum_probs=30.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~~   77 (455)
                      +|+|||+|-+|.++|..|+..|.  ++.|+|++..
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~   36 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE   36 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            69999999999999999999994  7999999754

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=91.23  E-value=0.34  Score=42.46  Aligned_cols=32  Identities=28%  Similarity=0.496  Sum_probs=29.5

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK   76 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~-V~l~Er~~   76 (455)
                      +|+|||+|-.|...|..|++.|+. ++|+|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            489999999999999999999995 99999764

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK13984 putative oxidoreductase; Provisional

Probab=91.22  E-value=1.6  Score=46.36  Aligned_cols=34  Identities=26%  Similarity=0.233  Sum_probs=28.4

Q ss_pred             CcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHc
Q 012845          359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK  398 (455)
Q Consensus       359 ~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~  398 (455)
                      .+|+.+||+++.      ..+..|+.++..+|..|.+++.
T Consensus       569 ~gVfAaGD~~~~------~~~v~Ai~~G~~AA~~I~~~L~  602 (604)
T PRK13984        569 PWLFAGGDIVHG------PDIIHGVADGYWAAEGIDMYLR  602 (604)
T ss_pred             CCEEEecCcCCc------hHHHHHHHHHHHHHHHHHHHhc
Confidence            789999999863      2467899999999999988764

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=91.19  E-value=0.28  Score=45.61  Aligned_cols=36  Identities=28%  Similarity=0.398  Sum_probs=33.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .+..++|+|+|+.+..+|..++..|++|+|+|-++.
T Consensus        99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964        99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            457999999999999999999999999999997755

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=91.15  E-value=0.25  Score=47.35  Aligned_cols=35  Identities=31%  Similarity=0.465  Sum_probs=32.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|+|||.|.+|..+|..|++.|.+|++++|++.
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~  186 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA  186 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            57899999999999999999999999999998843

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=91.05  E-value=0.32  Score=45.07  Aligned_cols=36  Identities=31%  Similarity=0.466  Sum_probs=31.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~   77 (455)
                      ...+|+|||+|-.|..+|..|++.|+ +++|+|.+.-
T Consensus        23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v   59 (240)
T TIGR02355        23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV   59 (240)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence            45789999999999999999999998 5999997643

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=91.04  E-value=0.24  Score=49.88  Aligned_cols=36  Identities=33%  Similarity=0.450  Sum_probs=33.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..+|+|+|-|.+|+++|..|.+.|.+|+++|.++.+
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            578999999999999999999999999999987766

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=90.97  E-value=0.13  Score=42.53  Aligned_cols=34  Identities=29%  Similarity=0.384  Sum_probs=27.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEK   74 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er   74 (455)
                      ..+.+|.|||+|-.|..+|..|.+.|+.|.-+..
T Consensus         8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~s   41 (127)
T PF10727_consen    8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYS   41 (127)
T ss_dssp             ----EEEEECTSCCCCHHHHHHHHTTSEEEEESS
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEe
Confidence            4578999999999999999999999999876654

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=90.93  E-value=0.27  Score=47.23  Aligned_cols=33  Identities=24%  Similarity=0.403  Sum_probs=30.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +|.|||.|..|..+|..|+++|++|+++++++.
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~   35 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQ   35 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            699999999999999999999999999998754

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=90.90  E-value=0.33  Score=44.56  Aligned_cols=34  Identities=32%  Similarity=0.533  Sum_probs=31.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCC---EEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIK---CSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~---V~l~Er~~   76 (455)
                      ..+|+|+|+|-+|...|..|.+.|.+   |.|++|+.
T Consensus        25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            45799999999999999999999985   99999984

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=90.88  E-value=0.28  Score=48.88  Aligned_cols=33  Identities=24%  Similarity=0.349  Sum_probs=29.5

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      +|.|||.|-.|+.+|..|+. |++|+++|++...
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~k   34 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSR   34 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHH
Confidence            59999999999999988886 9999999998643

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.86  E-value=0.28  Score=50.25  Aligned_cols=34  Identities=32%  Similarity=0.492  Sum_probs=31.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .+|+|+|.|.+|.++|..|.+.|++|++.|+++.
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~   48 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE   48 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            4799999999999999999999999999998754

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=90.84  E-value=0.32  Score=46.37  Aligned_cols=34  Identities=24%  Similarity=0.492  Sum_probs=30.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      ..+|+|+|+|-+|.++|..|++.|. +|+|++|+.
T Consensus       127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            3579999999999999999999998 699999874

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=90.81  E-value=0.4  Score=43.51  Aligned_cols=35  Identities=23%  Similarity=0.385  Sum_probs=31.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~-V~l~Er~~   76 (455)
                      .+..|+|||+|-.|..+|..|++.|+. ++|+|.+.
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~   62 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV   62 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            457899999999999999999999985 99999764

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=90.75  E-value=0.41  Score=40.38  Aligned_cols=33  Identities=27%  Similarity=0.567  Sum_probs=29.8

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~   77 (455)
                      +|+|||.|-.|..+|..|++.|+ +++|+|.+..
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v   34 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTV   34 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence            48999999999999999999998 5999997643

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.75  E-value=0.27  Score=50.73  Aligned_cols=34  Identities=32%  Similarity=0.548  Sum_probs=30.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ...|+|+|.|.+|++++..|.+.|.+|++.|+.+
T Consensus        12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~   45 (488)
T PRK03369         12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDP   45 (488)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3479999999999999999999999999999653

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=90.75  E-value=2.2  Score=45.74  Aligned_cols=35  Identities=11%  Similarity=0.131  Sum_probs=30.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~   77 (455)
                      ..+|+|||+|..|+-+|..+.+.|- +|+++++++.
T Consensus       451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~  486 (639)
T PRK12809        451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDE  486 (639)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            4689999999999999999888885 7999987643

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=90.72  E-value=0.3  Score=47.11  Aligned_cols=33  Identities=21%  Similarity=0.422  Sum_probs=29.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~   76 (455)
                      .+|+|||+|..|.++|..|.+.|+  +|.++++++
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~   41 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA   41 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            469999999999999999999995  799999864

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=90.68  E-value=0.33  Score=47.95  Aligned_cols=34  Identities=29%  Similarity=0.564  Sum_probs=31.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g-~~V~l~Er~~~   77 (455)
                      .+|+|||+|-.|..+|..|+++| .+|+|-+|...
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~   36 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE   36 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence            47999999999999999999999 89999999843

>PTZ00117 malate dehydrogenase; Provisional

Probab=90.63  E-value=0.36  Score=46.86  Aligned_cols=37  Identities=16%  Similarity=0.314  Sum_probs=32.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g-~~V~l~Er~~~~   78 (455)
                      .+.+|+|||+|-.|.++|+.|+..| .++.|+|.+...
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~   41 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGV   41 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCcc
Confidence            4568999999999999999999999 589999987543

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=90.55  E-value=0.26  Score=53.24  Aligned_cols=34  Identities=26%  Similarity=0.335  Sum_probs=30.7

Q ss_pred             cCEEEECCCHHHHHHHHHHH-hCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLT-KLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La-~~g~~V~l~Er~~~   77 (455)
                      ..|.|||+|..|...|..++ ++|++|+++|.++.
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~  339 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ  339 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            46999999999999999998 58999999998754

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=90.52  E-value=0.24  Score=53.57  Aligned_cols=34  Identities=21%  Similarity=0.320  Sum_probs=31.0

Q ss_pred             cCEEEECCCHHHHHHHHHHH-hCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLT-KLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La-~~g~~V~l~Er~~~   77 (455)
                      ..|.|||+|..|...|..++ +.|++|+++|.++.
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~  344 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQ  344 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHH
Confidence            57999999999999999999 88999999998654

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=90.47  E-value=0.32  Score=46.58  Aligned_cols=33  Identities=30%  Similarity=0.368  Sum_probs=30.7

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +|.|||.|..|..+|..|++.|++|.++++++.
T Consensus         4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~   36 (296)
T PRK11559          4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPE   36 (296)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            699999999999999999999999999998753

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=90.47  E-value=0.38  Score=44.72  Aligned_cols=35  Identities=26%  Similarity=0.452  Sum_probs=31.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      .+.+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   66 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT   66 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            35789999999999999999999998 699999764

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=90.38  E-value=0.52  Score=35.86  Aligned_cols=32  Identities=31%  Similarity=0.474  Sum_probs=29.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEK   74 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~-g~~V~l~Er   74 (455)
                      ..+++|+|.|-+|..+|..|.+. +.+|.+++|
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            45799999999999999999998 678999998

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=90.36  E-value=0.32  Score=46.79  Aligned_cols=32  Identities=31%  Similarity=0.486  Sum_probs=29.0

Q ss_pred             EEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845           46 VLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (455)
Q Consensus        46 VvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~   77 (455)
                      |.|||+|-.|..+|..|+..|+ +|.++|.+..
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~   33 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEG   33 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCc
Confidence            6899999999999999999887 9999998743

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=90.35  E-value=0.33  Score=47.53  Aligned_cols=34  Identities=26%  Similarity=0.542  Sum_probs=31.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ++|.|||.|-.||..|..|++.|++|+.+|....
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~   34 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDES   34 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            3699999999999999999999999999998753

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=90.28  E-value=0.25  Score=46.55  Aligned_cols=35  Identities=26%  Similarity=0.419  Sum_probs=32.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      .+-+|+|+|||.+|.-+|..+.-.|-+|+|+|.+.
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~  201 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI  201 (371)
T ss_pred             CCccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence            35799999999999999999999999999999874

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=90.27  E-value=0.34  Score=49.71  Aligned_cols=35  Identities=26%  Similarity=0.370  Sum_probs=31.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|+|+|+|++|++++..+...|.+|.++|++..
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~  198 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  198 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999998753

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.24  E-value=0.34  Score=49.75  Aligned_cols=35  Identities=17%  Similarity=-0.098  Sum_probs=31.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|+|+|.|.+|.++|..|.+.|.+|++.|.+..
T Consensus         8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~   42 (468)
T PRK04690          8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNA   42 (468)
T ss_pred             CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence            35799999999999999999999999999997644

>TIGR02730 carot_isom carotene isomerase

Probab=90.16  E-value=0.99  Score=46.72  Aligned_cols=64  Identities=19%  Similarity=0.174  Sum_probs=51.0

Q ss_pred             hhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCEEEeec
Q 012845          155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTD  233 (455)
Q Consensus       155 ~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~Ad  233 (455)
                      ..+.+.|.+.+++.|+                   +|+.+++|++|..+++.+. |.+.   +|.    ++++|.||.|.
T Consensus       229 ~~l~~~L~~~~~~~G~-------------------~i~~~~~V~~I~~~~~~~~gv~~~---~g~----~~~ad~vV~a~  282 (493)
T TIGR02730       229 GQIAESLVKGLEKHGG-------------------QIRYRARVTKIILENGKAVGVKLA---DGE----KIYAKRIVSNA  282 (493)
T ss_pred             HHHHHHHHHHHHHCCC-------------------EEEeCCeeeEEEecCCcEEEEEeC---CCC----EEEcCEEEECC
Confidence            5688889999999887                   9999999999987665443 4444   554    68899999999


Q ss_pred             CCCchhhhhcC
Q 012845          234 GAGSTVRKLVG  244 (455)
Q Consensus       234 G~~S~vr~~l~  244 (455)
                      |.+..+++.++
T Consensus       283 ~~~~~~~~Ll~  293 (493)
T TIGR02730       283 TRWDTFGKLLK  293 (493)
T ss_pred             ChHHHHHHhCC
Confidence            99888877664

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.12  E-value=0.32  Score=49.14  Aligned_cols=34  Identities=21%  Similarity=0.373  Sum_probs=31.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .+|+|||-|.+|.++|..|.+.|++|+++|++..
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~   37 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE   37 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4699999999999999999999999999997654

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=90.11  E-value=0.45  Score=47.23  Aligned_cols=37  Identities=19%  Similarity=0.148  Sum_probs=33.1

Q ss_pred             CCcccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           40 NEAVVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        40 ~~~~~dVvIVGg-G~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +..+.+|+|.|| |..|..++..|.++|++|+.++|..
T Consensus        18 ~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~   55 (370)
T PLN02695         18 PSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK   55 (370)
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence            345678999999 9999999999999999999999864

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.11  E-value=0.37  Score=49.92  Aligned_cols=33  Identities=24%  Similarity=0.438  Sum_probs=30.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ..|.|+|.|-+|.++|..|.+.|++|.+.|.+.
T Consensus         8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            469999999999999999999999999999765

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=90.08  E-value=0.32  Score=46.77  Aligned_cols=33  Identities=21%  Similarity=0.411  Sum_probs=30.7

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +|.|||.|..|..+|..|+++|++|.+++|++.
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~   34 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQD   34 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            599999999999999999999999999998753

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=90.05  E-value=0.26  Score=50.31  Aligned_cols=34  Identities=21%  Similarity=0.321  Sum_probs=31.7

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      +|.|||.|..|..+|..|+++|++|.+++|++..
T Consensus         3 ~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~   36 (470)
T PTZ00142          3 DIGLIGLAVMGQNLALNIASRGFKISVYNRTYEK   36 (470)
T ss_pred             EEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence            6999999999999999999999999999998653

>TIGR00936 ahcY adenosylhomocysteinase

Probab=90.00  E-value=0.36  Score=48.13  Aligned_cols=36  Identities=22%  Similarity=0.271  Sum_probs=32.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ....|+|||.|+.|..+|..|+..|.+|+++|+++.
T Consensus       194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~  229 (406)
T TIGR00936       194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI  229 (406)
T ss_pred             CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence            356899999999999999999999999999998764

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=89.94  E-value=0.45  Score=45.93  Aligned_cols=35  Identities=23%  Similarity=0.398  Sum_probs=30.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~~   77 (455)
                      +.+|+|||+|-.|.++|+.|+..|+  ++.|||.+..
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~   39 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVED   39 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            4589999999999999999999876  5999998753

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=89.87  E-value=0.46  Score=42.42  Aligned_cols=33  Identities=24%  Similarity=0.569  Sum_probs=30.1

Q ss_pred             ccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           43 VVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        43 ~~dVvIVGg-G~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      ..+|+|+|| |..|..+|..|++.|.+|+++.|+
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            457999997 999999999999999999999876

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=89.80  E-value=0.49  Score=43.52  Aligned_cols=35  Identities=29%  Similarity=0.461  Sum_probs=31.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      .+.+|+|||+|-.|...|..|++.|+ +++|+|.+.
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            35789999999999999999999998 699999764

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK08328 hypothetical protein; Provisional

Probab=89.78  E-value=0.49  Score=43.59  Aligned_cols=35  Identities=20%  Similarity=0.439  Sum_probs=31.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      .+.+|+|||+|=.|..+|..|++.|+ +++|+|.+.
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~   61 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT   61 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            35789999999999999999999998 599998664

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=89.72  E-value=0.37  Score=46.43  Aligned_cols=33  Identities=33%  Similarity=0.623  Sum_probs=29.8

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +|.|+|+|-.|+..|+.|++.|.+|+++=|.+.
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~   34 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR   34 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence            699999999999999999999988888887653

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=89.64  E-value=0.39  Score=45.76  Aligned_cols=35  Identities=23%  Similarity=0.414  Sum_probs=32.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ...|+|+|.|-.|.++|..|+..|.+|++++|+..
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~  185 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA  185 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999998753

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=89.56  E-value=0.43  Score=46.96  Aligned_cols=33  Identities=36%  Similarity=0.654  Sum_probs=27.4

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~   77 (455)
                      .|+|+|+||.||+++..++..|. +|.++|+.+.
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~  204 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE  204 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH
Confidence            59999999999999888888886 5777787643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	455
3ihg_A	535	Crystal Structure Of A Ternary Complex Of Aklavinon		6e-30
2r0c_A	549	Structure Of The Substrate-Free Form Of The Rebecca		3e-27
4eip_A	549	Native And K252c Bound Rebc-10x Length = 549		7e-27
2qa2_A	499	Crystal Structure Of Cabe, An Aromatic Hydroxylase		9e-19
1pn0_A	665	Phenol Hydroxylase From Trichosporon Cutaneum Lengt		8e-16
2qa1_A	500	Crystal Structure Of Pgae, An Aromatic Hydroxylase		2e-15
1foh_A	664	Phenol Hydroxylase From Trichosporon Cutaneum Lengt		1e-14
3fmw_A	570	The Crystal Structure Of Mtmoiv, A Baeyer-Villiger		1e-13
2dkh_A	639	Crystal Structure Of 3-Hydroxybenzoate Hydroxylase		1e-12
4hb9_A	412	Crystal Structure Of A Putative Fad Containing Mono		2e-05

>pdb|3IHG|A Chain A, Crystal Structure Of A Ternary Complex Of Aklavinone-11 Hydroxylase With Fad And Aklavinone Length = 535

Iteration: 1
 Score =  128 bits (322), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 119/427 (27%), Positives = 189/427 (44%), Gaps = 42/427 (9%)
Query: 40  NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLD 99
           N+  V VL+VGAG  GL  ++ L + G++  V+E+    S +P+A   N R   + R + 
Sbjct: 2   NDHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLR-IG 60
Query: 100 GLAEEIERSQPPVDLWRKFI--YCTSVTGPILGSVDHMQPQDFEKVV------SPVSVAH 151
           G+A+E+ R+         F+     SV G IL +V     + F+ +V      +P   A 
Sbjct: 61  GVADEVVRADDIRGTQGDFVIRLAESVRGEILRTVS----ESFDDMVAATEPCTPAGWAM 116
Query: 152 FSQYXXXXXXXXXXXXXXXXICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIA 211
            SQ                 I  ++  +        G  I  G   +S    D       
Sbjct: 117 LSQ------------DKLEPILLAQARK-------HGGAIRFGTRLLSFRQHDDDAGAGV 157
Query: 212 SFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLL 271
           +    G   E +++   L+G DG  S VR+ +GI   G   L  +V V F   DL   + 
Sbjct: 158 TARLAGPDGEYDLRAGYLVGADGNRSLVRESLGIGRYGHGTLTHMVGVIF-DADLSGIM- 215
Query: 272 NERPGM--LFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKL 328
              PG    +++ + E  G     D +     L V + P + +  EDF+P+ C +LI   
Sbjct: 216 --EPGTTGWYYLHHPEFKGTFGPTD-RPDRHTLFVEYDPDEGERPEDFTPQRCVELIGLA 272
Query: 329 VGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHN 388
           +       +++DI+ W M A +AE++     ++ LAGDA    PP GG   N  V D  +
Sbjct: 273 LDAPEVKPELVDIQGWEMAARIAERWR--EGRVFLAGDAAKVTPPTGGMSGNAAVADGFD 330
Query: 389 LAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSE 448
           LAWK+A+VL+  A A +L+TYE ERK  AE   A ++  +   M    A   D ++   E
Sbjct: 331 LAWKLAAVLQGQAGAGLLDTYEDERKVAAELVVAEALAIYAQRMAPHMAEVWDKSVGYPE 390
Query: 449 GIAGRNF 455
            + G  +
Sbjct: 391 TLLGFRY 397

>pdb|2R0C|A Chain A, Structure Of The Substrate-Free Form Of The Rebeccamycin Biosynthetic Enzyme Rebc Length = 549

Iteration: 1
 Score =  119 bits (299), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 170/400 (42%), Gaps = 39/400 (9%)
Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEI 105
           VLI+G GPVG+ L++ L    +   V+E+     THP+   I  R   +FR+  G+A++I
Sbjct: 29  VLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRW-GVAKQI 87
Query: 106 ERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYXXXXXXXXXX 165
             +  P D      + T V G              E    P+  A               
Sbjct: 88  RTAGWPGDHPLDAAWVTRVGG-------------HEVYRIPLGTA-------DTRATPEH 127
Query: 166 XXXXXXICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQ 225
                 IC       L    + G  +       S    D  +    + L+ G    R + 
Sbjct: 128 TPEPDAICPQHWLAPLLAEAV-GERLRTRSRLDSFEQRDDHVRATITDLRTGAT--RAVH 184
Query: 226 CNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTE 285
              L+  DGA S  RK +GID       Q   ++ F + +L   LL ER  + FF+  + 
Sbjct: 185 ARYLVACDGASSPTRKALGIDAPPRHRTQVFRNILFRAPEL-RSLLGERAALFFFLMLSS 243
Query: 286 AIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICE--KLIFKLVGWELSDIDVIDIKP 343
           ++   +      G + L V        ++D S    +  +L+ + V ++ ++I+V+    
Sbjct: 244 SLRFPLRALDGRGLYRLTV-------GVDDASKSTMDSFELVRRAVAFD-TEIEVLSDSE 295
Query: 344 WVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPA 403
           W +   VA+ F     ++ L GDA H   P+GGFGMNTG+  A +L WK+A+ L+  A  
Sbjct: 296 WHLTHRVADSF--SAGRVFLTGDAAHTLSPSGGFGMNTGIGSAADLGWKLAATLRGWAGP 353
Query: 404 SILNTYETERKPIAEFNTALSVQNFRAAM--EVPSALGLD 441
            +L TYE ER+P+A  +   +  N R  M  E+P  L  D
Sbjct: 354 GLLATYEEERRPVAITSLEEANVNLRRTMDRELPPGLHDD 393

>pdb|4EIP|A Chain A, Native And K252c Bound Rebc-10x Length = 549

Iteration: 1
 Score =  118 bits (295), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 171/405 (42%), Gaps = 49/405 (12%)
Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEI 105
           VLI+G GPVG+ L++ L    +   V++      THP+   I  R   +FR+  G+A++I
Sbjct: 29  VLILGGGPVGMALALDLAHRQVGHLVVDAGDGTITHPKVSTIGPRSMELFRRW-GVAKQI 87
Query: 106 ERSQPPVDLWRKFIYCTSVTGP-----ILGSVDHMQPQDFEKVVSPVSVAHFSQYXXXXX 160
             +  P D      + T V G       LG+ D     +       +  AH+        
Sbjct: 88  RTAGWPGDHPLDAAWVTRVGGHEVYRIPLGTADTRATPEHTPEPDAICPAHWLAPLLAEA 147
Query: 161 XXXXXXXXXXXICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCT 220
                                      G  +       S    D  +    + L+ G   
Sbjct: 148 V--------------------------GERLRTRSRLDSFEQRDDHVRATITDLRTGAT- 180
Query: 221 ERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF 280
            R +    L+  DGA S  RK +GID       Q   ++ F + +L   LL ER  ++FF
Sbjct: 181 -RAVHARYLVACDGASSPTRKALGIDAPPRHRTQVFRNILFRAPEL-RSLLGERAALVFF 238
Query: 281 IFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICE--KLIFKLVGWELSDIDV 338
           +  + ++   +      G + L V        ++D S    +  +L+ + V ++ ++I+V
Sbjct: 239 LMLSSSLRFPLRSLDGRGLYNLVV-------GVDDASKSTMDSFELVRRAVAFD-TEIEV 290
Query: 339 IDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK 398
           +    W +   VA+ F     ++ L GDA H   P+GGFGMNTG+  A +L WK+A+ L+
Sbjct: 291 LSDSEWHLTHRVADSF--SAGRVFLTGDAAHTLSPSGGFGMNTGIGSAADLGWKLAATLR 348
Query: 399 DIAPASILNTYETERKPIAEFNTALSVQNFRAAM--EVPSALGLD 441
             A   +L TYE ER+P+A  +   +  N R  M  E+P  L  D
Sbjct: 349 GWAGPGLLATYEEERRPVAITSLEEANVNLRRTMDRELPPGLHDD 393

>pdb|2QA2|A Chain A, Crystal Structure Of Cabe, An Aromatic Hydroxylase From Angucycline Biosynthesis, Determined To 2.7 A Resolution Length = 499

Iteration: 1
 Score = 91.7 bits (226), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 117/238 (49%), Gaps = 22/238 (9%)
Query: 185 LLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVG 244
           L +G E+L GH   ++  TD+  +V+     EG    R++    ++G DG  STVRK  G
Sbjct: 118 LGRGAELLRGHTVRAL--TDEGDHVVVEV--EGPDGPRSLTTRYVVGCDGGRSTVRKAAG 173
Query: 245 IDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEG-EFILQ 303
            D  G    +++    FL+ D+    +  RP     I  T  +G++++  L +G + I+ 
Sbjct: 174 FDFPGTSASREM----FLA-DIRGCEITPRP-----IGETVPLGMVMSAPLGDGVDRIIV 223
Query: 304 VPFYPPQQNLEDFSP-EICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY--NQ 360
                P +      P +       +L G ++S  + +    WV       + +  Y   +
Sbjct: 224 CERGAPARRRTGPPPYQEVAAAWQRLTGQDISHGEPV----WVSAFGDPARQVSAYRRGR 279
Query: 361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE 418
           ++LAGD+ H   PAGG GMN  VQD+ NL WK+A+V+   APA +L+TY  ER P+  
Sbjct: 280 VLLAGDSAHVHLPAGGQGMNVSVQDSVNLGWKLAAVVSGRAPAGLLDTYHEERHPVGR 337

>pdb|1PN0|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum Length = 665

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 110/257 (42%), Gaps = 46/257 (17%)
Query: 224 IQCNILIGTDGAGSTVRKLVGIDLVGEK-----------------DLQKLVSVHFLSKDL 266
           + C  +IG DG  S VR+ +G +++GE+                 D++   ++H  S + 
Sbjct: 217 VHCKYVIGCDGGHSWVRRTLGFEMIGEQTDYIWGVLDAVPASNFPDIRSRCAIH--SAES 274
Query: 267 GDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEIC---EK 323
           G  ++  R   L   +       L A   K G             +   F+PE+     K
Sbjct: 275 GSIMIIPRENNLVRFYVQ-----LQARAEKGGRV-----------DRTKFTPEVVIANAK 318
Query: 324 LIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGV 383
            IF    +++  +D      + +   V EKF     ++ +AGDACH   P  G GMNT +
Sbjct: 319 KIFHPYTFDVQQLDWF--TAYHIGQRVTEKF-SKDERVFIAGDACHTHSPKAGQGMNTSM 375
Query: 384 QDAHNLAWKIASVLKDIAPASILNTYETERKPIAE----FNTALS-VQNFRAAMEVPSAL 438
            D +NL WK+  VL   A   IL TYE ER+P A+    F+   S + + R A +V   +
Sbjct: 376 MDTYNLGWKLGLVLTGRAKRDILKTYEEERQPFAQALIDFDHQFSRLFSGRPAKDVADEM 435
Query: 439 GLDPTIANSEGIAGRNF 455
           G+   +     + G  F
Sbjct: 436 GVSMDVFKEAFVKGNEF 452

>pdb|2QA1|A Chain A, Crystal Structure Of Pgae, An Aromatic Hydroxylase Involved In Angucycline Biosynthesis Length = 500

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 107/237 (45%), Gaps = 26/237 (10%)
Query: 188 GREILMGHECVSVSATDQCINVIASFLK-EGKCTERNIQCNILIGTDGAGSTVRKLVGID 246
           G +I  GHE +S+  TD    V       EGK T   ++   L+G DG  S+VRK  G D
Sbjct: 120 GADIRRGHEVLSL--TDDGAGVTVEVRGPEGKHT---LRAAYLVGCDGGRSSVRKAAGFD 174
Query: 247 LVGEKDLQKLVSVHFLSKDLGDYLLNER-PGMLFFIFNTEAIGVLVAHDLKEG--EFILQ 303
             G     ++        +L   ++ E  PG           G+++   L  G    I+ 
Sbjct: 175 FPGTAATMEMYLADIKGVELQPRMIGETLPG-----------GMVMVGPLPGGITRIIVC 223
Query: 304 VPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY--NQI 361
               PPQ+     S         +L G +++  + +    WV     A + +  Y   ++
Sbjct: 224 ERGTPPQRRETPPSWHEVADAWKRLTGDDIAHAEPV----WVSAFGNATRQVTEYRRGRV 279
Query: 362 ILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE 418
           ILAGD+ H   PAGG GMNT +QDA NL WK+ +V+   A   +L++Y +ER  + +
Sbjct: 280 ILAGDSAHIHLPAGGQGMNTSIQDAVNLGWKLGAVVNGTATEELLDSYHSERHAVGK 336

>pdb|1FOH|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum Length = 664

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 108/257 (42%), Gaps = 46/257 (17%)
Query: 224 IQCNILIGTDGAGSTVRKLVGIDLVGEK-----------------DLQKLVSVHFLSKDL 266
           + C  +IG DG  S VR+ +G +++GE+                 D++   ++H  S + 
Sbjct: 216 VHCKYVIGCDGGHSWVRRTLGFEMIGEQTDYIWGVLDAVPASNFPDIRSRCAIH--SAES 273
Query: 267 GDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEIC---EK 323
           G  ++  R   L   +       L A   K G             +   F+PE+     K
Sbjct: 274 GSIMIIPRENNLVRFYVQ-----LQARAEKGGRV-----------DRTKFTPEVVIANAK 317
Query: 324 LIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGV 383
            IF    +++  +D      + +   V EKF     ++ +AGDACH   P  G GMNT +
Sbjct: 318 KIFHPYTFDVQQLDWF--TAYHIGQRVTEKF-SKDERVFIAGDACHTHSPKAGQGMNTSM 374
Query: 384 QDAHNLAWKIASVLKDIAPASILNTYETERKPIAE----FNTALS-VQNFRAAMEVPSAL 438
            D +NL WK+  VL   A   IL TYE ER   A+    F+   S + + R A +V   +
Sbjct: 375 MDTYNLGWKLGLVLTGRAKRDILKTYEEERHAFAQALIDFDHQFSRLFSGRPAKDVADEM 434
Query: 439 GLDPTIANSEGIAGRNF 455
           G+   +     + G  F
Sbjct: 435 GVSMDVFKEAFVKGNEF 451

>pdb|3FMW|A Chain A, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger Monooxygenase From The Mithramycin Biosynthetic Pathway In Streptomyces Argillaceus. Length = 570

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 97/235 (41%), Gaps = 19/235 (8%)
Query: 188 GREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDL 247
           G EI  GHE   +    + + V  +    G      ++    +G DG  STVR+L     
Sbjct: 162 GAEIPRGHEVTRLRQDAEAVEVTVA----GPSGPYPVRARYGVGCDGGRSTVRRLAADRF 217
Query: 248 VG-EKDLQKLVS-VHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVP 305
            G E  ++ L+  V    +++         G+L   F  E         L  G       
Sbjct: 218 PGTEATVRALIGYVTTPEREVPRRWERTPDGILVLAFPPEG-------GLGPGWSSSSTG 270
Query: 306 FYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY--NQIIL 363
             P      D  P   E L   +     + + + +   W+     A +    Y   +++L
Sbjct: 271 HSP----AADEGPVTLEDLGAAVARVRGTPLTLTEPVSWLSRFGDASRQAKRYRSGRVLL 326
Query: 364 AGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE 418
           AGDA H   P GG G+NTG+QDA NL WK+A+ ++      +L+TY  ER P+AE
Sbjct: 327 AGDAAHVHFPIGGQGLNTGLQDAVNLGWKLAARVRGWGSEELLDTYHDERHPVAE 381

>pdb|2DKH|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From Comamonas Testosteroni, In Complex With The Substrate Length = 639

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 100/217 (46%), Gaps = 33/217 (15%)
Query: 223 NIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI- 281
            +Q   ++G DGA S VR+ +G  LVG+   Q    +  L+       + + P + + + 
Sbjct: 197 TVQARYVVGCDGARSNVRRAIGRQLVGDSANQAWGVMDVLA-------VTDFPDVRYKVA 249
Query: 282 FNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIF--KLVGWELSDIDVI 339
             +E   VL+    +EG  +++  FY     L D    +  + I   +L+      +   
Sbjct: 250 IQSEQGNVLIIP--REGGHLVR--FYVEMDKL-DADERVASRNITVEQLIATAQRVLHPY 304
Query: 340 DIK----PWVMHAEVAEKFLCCYNQII--------------LAGDACHRFPPAGGFGMNT 381
            ++    PW    E+ ++    Y+ ++              +AGDACH   P  G GMN 
Sbjct: 305 KLEVKNVPWWSVYEIGQRICAKYDDVVDAVATPDSPLPRVFIAGDACHTHSPKAGQGMNF 364
Query: 382 GVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE 418
            +QD+ NL WK+A+VL+      +L+TY +ER+ +A+
Sbjct: 365 SMQDSFNLGWKLAAVLRKQCAPELLHTYSSERQVVAQ 401

>pdb|4HB9|A Chain A, Crystal Structure Of A Putative Fad Containing Monooxygenase From Photorhabdus Luminescens Subsp. Laumondii Tto1 (Target Psi-012791) Length = 412

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 83/197 (42%), Gaps = 29/197 (14%)
Query: 226 CNILIGTDGAGSTVRKL---------VGID-LVGEKDLQKLVSVHFLSKDLGDYLLN--- 272
            ++L+G DG+ S VRK          VG+  ++G   L   ++   L ++  D   N   
Sbjct: 155 VDVLVGADGSNSKVRKQYLPFIERFDVGVSXIIGRARLTPALTA-LLPQNFRDGTPNSIV 213
Query: 273 -ERPGMLFFIFNTEAIGVLVAHDLKE-GEFILQVPFYPPQQ---NLEDFSPE-ICEKLIF 326
            + P  LF       + + V   L E   FI+ V          N+ DFS E +C+ +  
Sbjct: 214 PKSPDWLFISXWRAPVNIHVEASLAEIDNFIVWVYVAATDSLPDNITDFSAEALCDLVQS 273
Query: 327 KLVGWELS------DIDVIDIKPWVMHAEVAEKFLCCYNQII-LAGDACHRFPPAGGFGM 379
           + + W+ S        D  +I P  +H       L   +  + L GDA H   P  G G 
Sbjct: 274 RXISWDPSLHTLVQQSDXENISP--LHLRSXPHLLPWKSSTVTLLGDAIHNXTPXTGSGA 331
Query: 380 NTGVQDAHNLAWKIASV 396
           NT ++DA  L  K+ASV
Sbjct: 332 NTALRDALLLTQKLASV 348

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	455
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	4e-98
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	2e-95
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	3e-69
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	5e-69
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	1e-66
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	3e-57
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	2e-51
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	3e-51
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	2e-33
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	3e-22
2bry_A	497	NEDD9 interacting protein with calponin homology a	2e-21
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	8e-18
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	5e-15
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	3e-14
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	3e-13
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	5e-13
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	2e-11
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	8e-10
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	3e-05
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	4e-05
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	5e-05
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	1e-04
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	2e-04
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	5e-04
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	7e-04
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	8e-04

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535

 Score =  303 bits (778), Expect = 4e-98
 Identities = 118/415 (28%), Positives = 182/415 (43%), Gaps = 38/415 (9%)

Query: 40  NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYAL-VFRKL 98
           N+  V VL+VGAG  GL  ++ L + G++  V+E+    S +P+A   N R  + + R  
Sbjct: 2   NDHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPR-TMELLRIG 60

Query: 99  DGLAEEIERSQPPVDLWRKFIY--CTSVTGPILGSVDHMQPQDFEKV--VSPVSVAHFSQ 154
            G+A+E+ R+         F+     SV G IL +V              +P   A  SQ
Sbjct: 61  -GVADEVVRADDIRGTQGDFVIRLAESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQ 119

Query: 155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFL 214
            KL  +LL Q  K                    G  I  G   +S    D       +  
Sbjct: 120 DKLEPILLAQARKH-------------------GGAIRFGTRLLSFRQHDDDAGAGVTAR 160

Query: 215 KEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNER 274
             G   E +++   L+G DG  S VR+ +GI   G   L  +V V F + DL   +    
Sbjct: 161 LAGPDGEYDLRAGYLVGADGNRSLVRESLGIGRYGHGTLTHMVGVIFDA-DLSGIM-EPG 218

Query: 275 PGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWEL 333
               +++ + E  G     D +     L V + P + +  EDF+P+ C +LI   +    
Sbjct: 219 TTGWYYLHHPEFKGTFGPTD-RPDRHTLFVEYDPDEGERPEDFTPQRCVELIGLALDAPE 277

Query: 334 SDIDVIDIKPWVMHAEVAEKFLCCYNQ---IILAGDACHRFPPAGGFGMNTGVQDAHNLA 390
              +++DI+ W M A +AE++     +   + LAGDA    PP GG   N  V D  +LA
Sbjct: 278 VKPELVDIQGWEMAARIAERW-----REGRVFLAGDAAKVTPPTGGMSGNAAVADGFDLA 332

Query: 391 WKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIA 445
           WK+A+VL+  A A +L+TYE ERK  AE   A ++  +   M    A   D ++ 
Sbjct: 333 WKLAAVLQGQAGAGLLDTYEDERKVAAELVVAEALAIYAQRMAPHMAEVWDKSVG 387

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549

 Score =  297 bits (761), Expect = 2e-95
 Identities = 103/402 (25%), Positives = 165/402 (41%), Gaps = 43/402 (10%)

Query: 44  VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYAL-VFRKLDGLA 102
             VLI+G GPVG+ L++ L    +   V+E+     THP+   I  R ++ +FR+  G+A
Sbjct: 27  TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPR-SMELFRRW-GVA 84

Query: 103 EEIERSQPPVDLWRKFIYCTSVTGPILGSVDH-MQPQDFEKVVSPVSVAHFSQYKLNKLL 161
           ++I  +  P D      + T V G  +  +             +P   A   Q+ L  LL
Sbjct: 85  KQIRTAGWPGDHPLDAAWVTRVGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLL 144

Query: 162 LKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTE 221
            + +                      G  +       S    D    V A+         
Sbjct: 145 AEAV----------------------GERLRTRSRLDSFEQRDDH--VRATITDLRTGAT 180

Query: 222 RNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI 281
           R +    L+  DGA S  RK +GID       Q   ++ F + +L   L  ER  + FF+
Sbjct: 181 RAVHARYLVACDGASSPTRKALGIDAPPRHRTQVFRNILFRAPELRSLLG-ERAALFFFL 239

Query: 282 FNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDI 341
             + ++   +      G + L V            S     +L+ + V ++  +I+V+  
Sbjct: 240 MLSSSLRFPLRALDGRGLYRLTVGVDD-----ASKSTMDSFELVRRAVAFDT-EIEVLSD 293

Query: 342 KPWVMHAEVAEKFLCCYNQ---IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK 398
             W +   VA+ F         + L GDA H   P+GGFGMNTG+  A +L WK+A+ L+
Sbjct: 294 SEWHLTHRVADSF-----SAGRVFLTGDAAHTLSPSGGFGMNTGIGSAADLGWKLAATLR 348

Query: 399 DIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGL 440
             A   +L TYE ER+P+A  +   +  N R  M+     GL
Sbjct: 349 GWAGPGLLATYEEERRPVAITSLEEANVNLRRTMDRELPPGL 390

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Length = 500

 Score =  227 bits (581), Expect = 3e-69
 Identities = 85/405 (20%), Positives = 143/405 (35%), Gaps = 56/405 (13%)

Query: 39  SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKL 98
            + +   V++VGAGP G++L+  L   G++  VLE+    +   +      R   VF + 
Sbjct: 7   HHRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQR 66

Query: 99  DGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAH-FSQYKL 157
            G+       +                           P DF  +      A    Q   
Sbjct: 67  -GILPRFGEVETSTQGHF-----------------GGLPIDFGVLEGAWQAAKTVPQSVT 108

Query: 158 NKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEG 217
              L +    L                   G +I  GHE +S++     + V       G
Sbjct: 109 ETHLEQWATGL-------------------GADIRRGHEVLSLTDDGAGVTVEV----RG 145

Query: 218 KCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM 277
              +  ++   L+G DG  S+VRK  G D  G                L D    E    
Sbjct: 146 PEGKHTLRAAYLVGCDGGRSSVRKAAGFDFPGTAATM-----EMY---LADIKGVELQPR 197

Query: 278 LFFIFNTEAIGVLVAHDLKEGEF--ILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSD 335
           +         G+++   L  G    I+     PPQ+     S         +L G +++ 
Sbjct: 198 MIGETLPG--GMVMVGPLPGGITRIIVCERGTPPQRRETPPSWHEVADAWKRLTGDDIAH 255

Query: 336 IDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIAS 395
            + + +  +        ++     ++ILAGD+ H   PAGG GMNT +QDA NL WK+ +
Sbjct: 256 AEPVWVSAFGNATRQVTEYRR--GRVILAGDSAHIHLPAGGQGMNTSIQDAVNLGWKLGA 313

Query: 396 VLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGL 440
           V+   A   +L++Y +ER  + +     +       +  P    L
Sbjct: 314 VVNGTATEELLDSYHSERHAVGKRLLMNTQAQGLLFLSGPEVQPL 358

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Length = 499

 Score =  226 bits (579), Expect = 5e-69
 Identities = 88/405 (21%), Positives = 145/405 (35%), Gaps = 56/405 (13%)

Query: 39  SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKL 98
            + +   V++VGAGP GL+L+  L   G+   VLE+    +   +      R   VF + 
Sbjct: 8   HHRSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQR 67

Query: 99  DGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVS-VAHFSQYKL 157
            G+       +                          +P DF  +      V    Q   
Sbjct: 68  -GILPAFGPVETSTQGHF-----------------GGRPVDFGVLEGAHYGVKAVPQSTT 109

Query: 158 NKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEG 217
             +L +                        G E+L GH   +++     + V      EG
Sbjct: 110 ESVLEEWALGR-------------------GAELLRGHTVRALTDEGDHVVVEV----EG 146

Query: 218 KCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM 277
               R++    ++G DG  STVRK  G D  G        S       L D    E    
Sbjct: 147 PDGPRSLTTRYVVGCDGGRSTVRKAAGFDFPGTS-----ASREMF---LADIRGCEITPR 198

Query: 278 LFFIFNTEAIGVLVAHDLKEGE--FILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSD 335
                    +G++++  L +G    I+     P ++       +       +L G ++S 
Sbjct: 199 PIGETV--PLGMVMSAPLGDGVDRIIVCERGAPARRRTGPPPYQEVAAAWQRLTGQDISH 256

Query: 336 IDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIAS 395
            + + +  +   A     +     +++LAGD+ H   PAGG GMN  VQD+ NL WK+A+
Sbjct: 257 GEPVWVSAFGDPARQVSAYRR--GRVLLAGDSAHVHLPAGGQGMNVSVQDSVNLGWKLAA 314

Query: 396 VLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGL 440
           V+   APA +L+TY  ER P+       +       +       L
Sbjct: 315 VVSGRAPAGLLDTYHEERHPVGRRLLMNTQAQGMLFLSGDEMQPL 359

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Length = 570

 Score =  222 bits (567), Expect = 1e-66
 Identities = 87/398 (21%), Positives = 141/398 (35%), Gaps = 61/398 (15%)

Query: 44  VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAE 103
             V++VG GPVGL+L+  L   G+   VLEK      H +A  ++ R         GL +
Sbjct: 50  TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLR-GLLD 108

Query: 104 EIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHF-SQYKLNKLLL 162
                                           Q  DF  V +         Q +   LL 
Sbjct: 109 RFLEGTQVAKGLPFA-------------GIFTQGLDFGLVDTRHPYTGLVPQSRTEALLA 155

Query: 163 KQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTER 222
           +   +                    G EI  GHE   +    +   V  +    G     
Sbjct: 156 EHAREA-------------------GAEIPRGHEVTRLRQDAEA--VEVTV--AGPSGPY 192

Query: 223 NIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF 282
            ++    +G DG  STVR+L      G +          L   +G     ER     +  
Sbjct: 193 PVRARYGVGCDGGRSTVRRLAADRFPGTEATV-----RAL---IGYVTTPEREVPRRWER 244

Query: 283 NTEAIGVLVAHDLKEGE----FILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDV 338
             +  G+LV     EG     +      + P  +    + E     + ++ G   + + +
Sbjct: 245 TPD--GILVLAFPPEGGLGPGWSSSSTGHSPAADEGPVTLEDLGAAVARVRG---TPLTL 299

Query: 339 IDIKPWV----MHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIA 394
            +   W+      +  A+++     +++LAGDA H   P GG G+NTG+QDA NL WK+A
Sbjct: 300 TEPVSWLSRFGDASRQAKRYRS--GRVLLAGDAAHVHFPIGGQGLNTGLQDAVNLGWKLA 357

Query: 395 SVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAM 432
           + ++      +L+TY  ER P+AE     +        
Sbjct: 358 ARVRGWGSEELLDTYHDERHPVAERVLLNTRAQLALMR 395

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* Length = 665

 Score =  199 bits (507), Expect = 3e-57
 Identities = 90/423 (21%), Positives = 158/423 (37%), Gaps = 59/423 (13%)

Query: 39  SNEAVVPVLIVGAGPVGLVLSILLTKL-----GIKCSVLEKNKAFSTHPQAHFINNRYAL 93
            +E+   VLIVGAGP GL+ + +L++       +K  +++K      + QA  +  R   
Sbjct: 4   YSESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLE 63

Query: 94  VFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFS 153
             + L GLA++I      +      +Y     G I       +  D    +S        
Sbjct: 64  SLKNL-GLADKILSEANDMSTIA--LYNPDENGHI---RRTDRIPDTLPGISRYHQVVLH 117

Query: 154 QYKLNKLLLKQLEKLNFKICTSE-----------------------------GTEGLHNH 184
           Q ++ + +L  + +++      E                              +E     
Sbjct: 118 QGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTP 177

Query: 185 LLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVG 244
           L  G +   G    ++   ++          +       + C  +IG DG  S VR+ +G
Sbjct: 178 LQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTLG 237

Query: 245 IDLVGEK-DLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGE--FI 301
            +++GE+ D    V     + +  D              ++   G ++    +     F 
Sbjct: 238 FEMIGEQTDYIWGVLDAVPASNFPD-------IRSRCAIHSAESGSIMIIPRENNLVRFY 290

Query: 302 LQVPFYPP---QQNLEDFSPEICEKLIFKLVGWELSDIDVIDIK---PWVMHAEVAEKFL 355
           +Q+        + +   F+PE+      K+        DV  +     + +   V EKF 
Sbjct: 291 VQLQARAEKGGRVDRTKFTPEVVIANAKKIFHPY--TFDVQQLDWFTAYHIGQRVTEKF- 347

Query: 356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKP 415
               ++ +AGDACH   P  G GMNT + D +NL WK+  VL   A   IL TYE ER+P
Sbjct: 348 SKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLTGRAKRDILKTYEEERQP 407

Query: 416 IAE 418
            A+
Sbjct: 408 FAQ 410

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Length = 394

 Score =  177 bits (451), Expect = 2e-51
 Identities = 67/411 (16%), Positives = 124/411 (30%), Gaps = 52/411 (12%)

Query: 44  VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQ--AHFINNRYALVFRKLDGL 101
             V I+GAGP GL+L  LL K GI   +LE+        +  A  +      + R+  G+
Sbjct: 3   TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREA-GV 61

Query: 102 AEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLL 161
              + R     +               +      +  D +++    +V  + Q ++ + L
Sbjct: 62  DRRMARDGLVHEGVE------------IAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDL 109

Query: 162 LKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTE 221
           ++  E                        +    E        +      +F ++G    
Sbjct: 110 MEAREACG------------------ATTVYQAAEVRLHDLQGE--RPYVTFERDG--ER 147

Query: 222 RNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI 281
             + C+ + G DG     R+ +  + +   +        +    LG              
Sbjct: 148 LRLDCDYIAGCDGFHGISRQSIPAERLKVFE------RVYPFGWLGLLADTPPVSHELIY 201

Query: 282 FNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPE-ICEKLIFKL---VGWELSDID 337
            N      L +               P  + +ED+S E    +L  +L   V  +L    
Sbjct: 202 ANHPRGFALCSQR--SATRSQYYVQVPLSEKVEDWSDERFWTELKARLPSEVAEKLVTGP 259

Query: 338 VIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL 397
            ++     + + V E     + ++ LAGDA H  PP G  G+N    D   L   +    
Sbjct: 260 SLEKSIAPLRSFVVEPM--QHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAY 317

Query: 398 KDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSE 448
           ++     +L  Y              S          P        I  +E
Sbjct: 318 RE-GRGELLERYSAICLRRIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTE 367

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Length = 639

 Score =  182 bits (463), Expect = 3e-51
 Identities = 83/425 (19%), Positives = 156/425 (36%), Gaps = 50/425 (11%)

Query: 39  SNEAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAFSTHPQAHFINNRYAL-VFR 96
           +  + V VLIVG GP GL L+  L     I+  ++E+ +      QA  I  R  + +F 
Sbjct: 28  AVPSQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACR-TMEMFE 86

Query: 97  KLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYK 156
                A+ I +    ++    +       G I     H + QD E  +S       +Q +
Sbjct: 87  AF-EFADSILKEACWINDVTFWKPDPGQPGRI---ARHGRVQDTEDGLSEFPHVILNQAR 142

Query: 157 LNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKE 216
           ++   L+++     ++      E  +   +   ++  G     V+ T      +      
Sbjct: 143 VHDHYLERMRNSPSRL------EPHYARRVLDVKVDHGAADYPVTVT------LERCDAA 190

Query: 217 GKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLL--NER 274
                  +Q   ++G DGA S VR+ +G  LVG+       +  +    + D L   +  
Sbjct: 191 HAGQIETVQARYVVGCDGARSNVRRAIGRQLVGDS-----ANQAWG---VMDVLAVTDFP 242

Query: 275 PGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQN----LEDFSPEICEKLIFKLVG 330
                    +E   VL+            V       +      + + E       +++ 
Sbjct: 243 DVRYKVAIQSEQGNVLIIPREGGHLVRFYVEMDKLDADERVASRNITVEQLIATAQRVLH 302

Query: 331 WELSDIDVIDIKPWVM----HAEVAEKF----------LCCYNQIILAGDACHRFPPAGG 376
                ++V ++  W         +  K+               ++ +AGDACH   P  G
Sbjct: 303 PY--KLEVKNVP-WWSVYEIGQRICAKYDDVVDAVATPDSPLPRVFIAGDACHTHSPKAG 359

Query: 377 FGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPS 436
            GMN  +QD+ NL WK+A+VL+      +L+TY +ER+ +A+       +  +   +   
Sbjct: 360 QGMNFSMQDSFNLGWKLAAVLRKQCAPELLHTYSSERQVVAQQLIDFDREWAKMFSDPAK 419

Query: 437 ALGLD 441
             G  
Sbjct: 420 EGGQG 424

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399

 Score =  128 bits (325), Expect = 2e-33
 Identities = 65/395 (16%), Positives = 131/395 (33%), Gaps = 79/395 (20%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEI 105
           VLI G G  G +L+ LL + G +  V+E+ +       A  +      V     GL  E+
Sbjct: 9   VLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAA-GLLAEV 67

Query: 106 -ERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHF----SQYKLNKL 160
             R                  G +L   ++          S V    +        L +L
Sbjct: 68  TRRGGRVRHELE-----VYHDGELLRYFNY----------SSVDARGYFILMPCESLRRL 112

Query: 161 LLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCT 220
           +L++++                       E+L      +V   ++        L +G   
Sbjct: 113 VLEKIDGEA------------------TVEMLFETRIEAVQRDERHAIDQVR-LNDG--- 150

Query: 221 ERNIQCNILIGTDGAGSTVRK-LVGIDLVG--------------EKDLQKLVSVHFLSKD 265
            R ++  +++G DG  S VR+ L+ ID+                   + +   ++  S  
Sbjct: 151 -RVLRPRVVVGADGIASYVRRRLLDIDVERRPYPSPMLVGTFALAPCVAERNRLYVDS-- 207

Query: 266 LGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLI 325
                  +     F+    +   ++V+   +E   ++            +      ++ +
Sbjct: 208 -------QGGLAYFYPIGFDRARLVVSFPREEARELMADT-------RGESLRRRLQRFV 253

Query: 326 FKLVGWELSDI-DVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQ 384
                  ++ +      K   +     +++    + + + GDA H   P  G GMN  ++
Sbjct: 254 GDESAEAIAAVTGTSRFKGIPIGYLNLDRYWA--DNVAMLGDAIHNVHPITGQGMNLAIE 311

Query: 385 DAHNLAWKIASVLK-DIAPASILNTYETERKPIAE 418
           DA  LA  +   L+   A    L  Y+ ER P+ +
Sbjct: 312 DASALADALDLALRDACALEDALAGYQAERFPVNQ 346

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398

 Score = 97.5 bits (243), Expect = 3e-22
 Identities = 72/413 (17%), Positives = 124/413 (30%), Gaps = 87/413 (21%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFIN---NRYALVFRKLDGLA 102
           V I+G GPVGL ++ LL + GI  SV E++           ++          +K  GL 
Sbjct: 29  VAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKA-GLL 87

Query: 103 EEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLL 162
           +       P+      +      G IL +    +    E       +   ++  L  +LL
Sbjct: 88  QTYYDLALPMG-----VNIADEKGNILST----KNVKPENRFDNPEI---NRNDLRAILL 135

Query: 163 KQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTER 222
             LE            + +              + V +    +      +F +       
Sbjct: 136 NSLEN-----------DTVIW----------DRKLVMLEPGKK--KWTLTF-ENK----P 167

Query: 223 NIQCNILIGTDGAGSTVRKLV--------------------GIDLVGEKDLQKLVSVHFL 262
           +   +++I  +G  S VRK V                     I+  G   L     +   
Sbjct: 168 SETADLVILANGGMSKVRKFVTDTEVEETGTFNIQADIHQPEINCPGFFQLCNGNRLMAS 227

Query: 263 SKDLGDYLLNERPGML---FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPE 319
            +    +      G L         +        D +    ++        +   D+   
Sbjct: 228 HQGNLLFANPNNNGALHFGISFKTPDEWKNQTQVDFQNRNSVVDF-L---LKEFSDWDER 283

Query: 320 ICEKLIFK---LVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGG 376
             E LI      VG       +   KPW                I + GDA H  PP  G
Sbjct: 284 YKE-LIHTTLSFVGLATRIFPLE--KPWKSKRP---------LPITMIGDAAHLMPPFAG 331

Query: 377 FGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR 429
            G+N+G+ DA  L+  +A    + +    +  YE +     +     S QN  
Sbjct: 332 QGVNSGLVDALILSDNLADGKFN-SIEEAVKNYEQQMFIYGKEAQEESTQNEI 383

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* Length = 497

 Score = 95.6 bits (237), Expect = 2e-21
 Identities = 75/445 (16%), Positives = 136/445 (30%), Gaps = 113/445 (25%)

Query: 44  VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAE 103
              L+VGAGP GL  ++ L  LG +  ++EK   FS H   H                  
Sbjct: 93  TKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLH------------------ 134

Query: 104 EIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLK 163
                     LW   I                   D   + +      F    L+ + ++
Sbjct: 135 ----------LWPFTI------------------HDLRALGAKKFYGRFCTGTLDHISIR 166

Query: 164 QLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA-TDQCINVIASFLKEGKCTER 222
           QL+ L  K+            LL G EI  G +   +     +     A           
Sbjct: 167 QLQLLLLKVA-----------LLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLA 215

Query: 223 NIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKD-LGDYLLNERPGM---- 277
           + + ++LI   G           ++ G+  +   ++ +F++   + +  + E  G+    
Sbjct: 216 SYEFDVLISAAGGKFVPEGFTIREMRGKLAIG--ITANFVNGRTVEETQVPEISGVARIY 273

Query: 278 --LFFIFNTEAIGV---LVAHDLKEGEFILQVPFYPP----------------------- 309
              FF    +A G+    + +   E  + +                              
Sbjct: 274 NQKFFQSLLKATGIDLENIVYYKDETHYFVMTAKKQCLLRLGVLRQDLSETDQLLGKANV 333

Query: 310 -QQNLEDFSPEICE--------KLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQ 360
             + L+ F+    +        KL F        D+   D    +M AE + +    +  
Sbjct: 334 VPEALQRFARAAADFATHGKLGKLEFAQDARGRPDVAAFDFT-SMMRAESSARVQEKHGA 392

Query: 361 ---IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIA 417
              + L GD         G G+  G   A + AW +    +   P  +L     ER+ + 
Sbjct: 393 RLLLGLVGDCLVEPFWPLGTGVARGFLAAFDAAWMVKRWAEGAGPLEVL----AERESLY 448

Query: 418 EFNTALSVQNFRAAMEVPSALGLDP 442
           +  +  S +N        +  GLDP
Sbjct: 449 QLLSQTSPENM---HRNVAQYGLDP 470

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Length = 381

 Score = 84.1 bits (207), Expect = 8e-18
 Identities = 54/408 (13%), Positives = 104/408 (25%), Gaps = 77/408 (18%)

Query: 46  VLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAE 103
           +L++GAGP GLV +  L +        ++EKN           +  R            +
Sbjct: 3   ILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLD 62

Query: 104 EIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLK 163
             ER  P                P L S                 +    +  L   L  
Sbjct: 63  APERLNPQF--LE-DFKLVHHNEPSLMSTGV-------------LLCGVERRGLVHALRD 106

Query: 164 QLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERN 223
           +                       G  I      +                         
Sbjct: 107 KCRSQ-------------------GIAIRFESPLLEHGEL------------------PL 129

Query: 224 IQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP-GMLFFIF 282
              ++++  +G            LV + D  +         +   +    +    +  +F
Sbjct: 130 ADYDLVVLANGVNHKTAHFTEA-LVPQVDYGR---------NKYIWYGTSQLFDQMNLVF 179

Query: 283 NTEAIGVLVAH--DLKEGEFILQVPFYPPQQN---LEDFSPEICEKLIFKLVGWELSDID 337
            T    + +AH     +      V           L + S E   + + K+   EL    
Sbjct: 180 RTHGKDIFIAHAYKYSDTMSTFIVECSEETYARARLGEMSEEASAEYVAKVFQAELGGHG 239

Query: 338 VI--DIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIAS 395
           ++      W     ++    C   +++L GDA      + G G    V  A  L   + +
Sbjct: 240 LVSQPGLGWRNFMTLSHD-RCHDGKLVLLGDALQSGHFSIGHGTTMAVVVAQLLVKALCT 298

Query: 396 VLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPT 443
              +    + L  +E    P+ +     +  +      V   + L   
Sbjct: 299 ---EDGVPAALKRFEERALPLVQLFRGHADNSRVWFETVEERMHLSSA 343

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 75.6 bits (186), Expect = 5e-15
 Identities = 52/375 (13%), Positives = 110/375 (29%), Gaps = 75/375 (20%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-------STHPQAHFINNRYALVFRKL 98
           VL++GAGP G V + L+ K G K  ++EK + F       S  P+             + 
Sbjct: 8   VLVIGAGPAGTVAASLVNKSGFKVKIVEK-QKFPRFVIGESLLPRC-------MEHLDEA 59

Query: 99  DGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDF-EKVVSPVSVA-HFSQYK 156
            G  + ++          KF+               +   +F ++  +  +      +  
Sbjct: 60  -GFLDAVKAQGFQQKFGAKFVRG-----------KEIADFNFSDQFSNGWNWTWQVPRGN 107

Query: 157 LNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKE 216
            +K L  +  +                   QG ++        +             +++
Sbjct: 108 FDKTLADEAAR-------------------QGVDVEYEVGVTDIKFFGTDSVTT---IED 145

Query: 217 GKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPG 276
               +R I+   +I   G G  + ++ G+D     + ++ +  H   KD+   +  E  G
Sbjct: 146 INGNKREIEARFIIDASGYGRVIPRMFGLDKPSGFESRRTLFTHI--KDVKRPVAAEMEG 203

Query: 277 MLFFIFNTEAIGVLVAHDLKEGEFILQVPFYP---------PQQNLEDF---SPEICEKL 324
                   +    +       G   +     P         P++ +         I E+ 
Sbjct: 204 NRITAVVHKPKVWIWVIPFSNGNTSVGFVGEPSYFDEYTGTPEERMRAMIANEGHIAERF 263

Query: 325 IFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQ 384
                  E    +   I+ + + A          +  +L G+A     P    G    ++
Sbjct: 264 K----SEEFLF-EPRTIEGYAISASK-----LYGDGFVLTGNATEFLDPIFSSGATFAME 313

Query: 385 DAHNLAWKIASVLKD 399
                       LK 
Sbjct: 314 SGSKGGKLAVQFLKG 328

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 73.9 bits (181), Expect = 3e-14
 Identities = 60/396 (15%), Positives = 117/396 (29%), Gaps = 84/396 (21%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-------STHPQAHFINNRYALVFRKL 98
           V I+G GP G V  + L KLG   ++ E+  AF       S  P    I         +L
Sbjct: 26  VAIIGGGPAGSVAGLTLHKLGHDVTIYER-SAFPRYRVGESLLPGTMSI-------LNRL 77

Query: 99  DGLAEEIERSQPPVDLWRKFIYCTSVT---GPILGSVDHMQPQDFEKVVSPVSVAHFSQY 155
            GL E+I+         + ++   S T   G                           + 
Sbjct: 78  -GLQEKIDA--------QNYVKKPSATFLWGQDQAPWTFSFAAPKVAPWVFDHAVQVKRE 128

Query: 156 KLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLK 215
           + +KLLL +                          +        V  +D    V+ +  +
Sbjct: 129 EFDKLLLDEARSRGI-------------------TVHEETPVTDVDLSDPDR-VVLTVRR 168

Query: 216 EGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSV--HFLS-------KDL 266
            G      ++ + +I   G+G  + + +G  +    +  +  +V  +F            
Sbjct: 169 GG--ESVTVESDFVIDAGGSGGPISRKLG--VRQYDEFYRNFAVWSYFKLKDPFEGDLKG 224

Query: 267 GDYLLNERPG-MLFFIF--NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDF---SPEI 320
             Y +    G +       +  ++G++V           +V                 + 
Sbjct: 225 TTYSITFEDGWVWMIPIKDDLYSVGLVVDRS-----KSAEVREQGADAFYSSTLAKCAKA 279

Query: 321 CEKLIFKLVGWELSDI-DVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGM 379
            + L           + +V  ++ W    EV        ++  L GDA     P    G+
Sbjct: 280 MDIL------GGAEQVDEVRIVQDWSYDTEV-----FSADRFFLCGDAACFTDPLFSQGV 328

Query: 380 NTGVQDAHNLAWKIASVLK-DIAPASILNTYETERK 414
           +   Q A + A  I  + +      ++   Y    +
Sbjct: 329 HLASQSAVSAAAAIDRITRHGDEKDAVHAWYNRTYR 364

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 70.7 bits (173), Expect = 3e-13
 Identities = 61/398 (15%), Positives = 120/398 (30%), Gaps = 84/398 (21%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-------STHPQAHFINNRYALVFRKL 98
           ++++G GP G  L+  +   G +  +LE+ +AF       S  P           +   L
Sbjct: 10  LIVIGGGPGGSTLASFVAMRGHRVLLLER-EAFPRHQIGESLLPAT------VHGICAML 62

Query: 99  DGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDF--EKVVSPVSVAHFSQYK 156
            GL +E++R+  P+     F +         G         F               + +
Sbjct: 63  -GLTDEMKRAGFPIKRGGTFRW---------GKEPEPWTFGFTRHPDDPYGFAYQVERAR 112

Query: 157 LNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKE 216
            + +LL+  E+                   +G ++   HE + V    +    +     E
Sbjct: 113 FDDMLLRNSER-------------------KGVDVRERHEVIDVLFEGERAVGVRYRNTE 153

Query: 217 GKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSV--HF-----LSKDLGDY 269
           G   E       ++   G  + V + VG          + V++  +F     L       
Sbjct: 154 G--VELMAHARFIVDASGNRTRVSQAVG--ERVYSRFFQNVALYGYFENGKRLPAPRQGN 209

Query: 270 LLNERP----GMLFFIFNTEA-IGVLVAHDLKEGEFILQVPFYPPQQNLEDF-------S 317
           +L+            + +T   +G +V+ +  E            +   E          
Sbjct: 210 ILSAAFQDGWFWYIPLSDTLTSVGAVVSREAAE----------AIKDGHEAALLRYIDRC 259

Query: 318 PEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGF 377
           P I E L            ++   K +              N + L GDA     P    
Sbjct: 260 PIIKEYLAPATRVTTGDYGEIRIRKDYSYCNTS-----FWKNGMALVGDAACFVDPVFSS 314

Query: 378 GMNTGVQDAHNLAWKIASVLK-DIAPASILNTYETERK 414
           G++     A  +A  I + L  +++       +E   +
Sbjct: 315 GVHLATYSALLVARAINTCLAGEMSEQRCFEEFERRYR 352

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407

 Score = 69.6 bits (171), Expect = 5e-13
 Identities = 69/423 (16%), Positives = 120/423 (28%), Gaps = 123/423 (29%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST-------HPQAHFINNRYALVFRKL 98
            +++GAG  GL  ++ L + GI C V E  K            P             + +
Sbjct: 26  AIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNG----------VKCM 75

Query: 99  D--GLAEEIER-SQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQY 155
              G+ + +E    P     R+  Y    +G  +           E+  S       ++ 
Sbjct: 76  AHLGMGDIMETFGGPL----RRMAYRDFRSGENMTQFS--LAPLIERTGSRPCPVSRAE- 128

Query: 156 KLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLK 215
            L + +L              G + +            G              V   F  
Sbjct: 129 -LQREMLDYW-----------GRDSVQF----------GKRVTRCEEDAD--GVTVWF-T 163

Query: 216 EGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQK---------LVSVHFLSKDL 266
           +G     +   ++LI  DG+ S +R      ++G    ++         LV +       
Sbjct: 164 DG----SSASGDLLIAADGSHSALRPW----VLGFTPQRRYAGYVNWNGLVEIDEALAPG 215

Query: 267 GDYLLNERPGMLFFIFNTEAIGV---LVAHDLKEGEFILQVPFYPP-------------- 309
             +              T  +G    +    +  G F        P              
Sbjct: 216 DQW--------------TTFVGEGKQVSLMPVSAGRFYFFFDVPLPAGLAEDRDTLRADL 261

Query: 310 QQNLEDFSPEICEKLI-----FKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILA 364
            +    ++P + +KLI           E+ DI+       V              ++ L 
Sbjct: 262 SRYFAGWAPPV-QKLIAALDPQTTNRIEIHDIEPFS--RLV------------RGRVALL 306

Query: 365 GDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALS 424
           GDA H   P  G G    ++DA  L        +DIA A  L  YE +R          +
Sbjct: 307 GDAGHSTTPDIGQGGCAAMEDAVVLGAVFRQT-RDIAAA--LREYEAQRCDRVRDLVLKA 363

Query: 425 VQN 427
            + 
Sbjct: 364 RKR 366

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 68/420 (16%), Positives = 119/420 (28%), Gaps = 101/420 (24%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEK-NKAF-------STHPQAHFINNRYALVFRK 97
           + +VG    GL  +++L   G+   V E+  +            P+              
Sbjct: 8   IAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPEL----------VHY 57

Query: 98  LDGLAEEIE-RSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYK 156
           L     E++  S P         Y  ++TG  +GSV                   +    
Sbjct: 58  LLEQGVELDSISVPS----SSMEYVDALTGERVGSVPA-----------DWRFTSYDS-- 100

Query: 157 LNKLLLKQLEKLNFKICTSEGTEGLHNHL---LQGREILMGHECVSVSATDQCINVIASF 213
                                   ++  L               V +S   +   V   F
Sbjct: 101 ------------------------IYGGLYELFGPERYHTSKCLVGLSQDSE--TVQMRF 134

Query: 214 LKEGKCTERNIQCNILIGTDGAGSTVRK-LVGID-----------LVGEKDLQKLVSVHF 261
             +G       + N +IG DG  S VRK L+GI+           ++   ++   V  +F
Sbjct: 135 -SDG----TKAEANWVIGADGGASVVRKRLLGIEPTYAGYVTWRGVLQPGEVADDVWNYF 189

Query: 262 LSK---DLGD------YLLNERPGMLFFIFNTEAI-GVLVAHDLKEGEFILQVPFYPPQQ 311
             K    L D      Y +  R        N +    V    DL E    ++    P   
Sbjct: 190 NDKFTYGLLDDGHLIAYPIPGRENAESPRLNFQWYWNVAEGPDLDELMTDVRGIRLPTSV 249

Query: 312 NLEDFSPEICEKLIFKLVGWELSDIDVID----IKPWVMHAEVAEKFLCCYNQIILAGDA 367
           +    +P    +   K         D++         V+     ++    + +++L GDA
Sbjct: 250 HNNSLNPHNLRQFHSKGESLFKPFRDLVLNASSPFVTVVADATVDRM--VHGRVLLIGDA 307

Query: 368 CHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQN 427
                P    G      DA  LA        D+  +  L ++ET +            + 
Sbjct: 308 AVTPRPHAAAGGAKASDDARTLAEVFTK-NHDLRGS--LQSWETRQLQQGHAYLNKVKKM 364

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410

 Score = 59.2 bits (144), Expect = 8e-10
 Identities = 72/416 (17%), Positives = 122/416 (29%), Gaps = 112/416 (26%)

Query: 46  VLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAFST-------HPQAHFINNRYALVFRK 97
           +LI GAG  GL  ++ L + GI K ++LE +             P A            +
Sbjct: 7   ILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAA-------VEALAE 59

Query: 98  LDGLAEEIER-SQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYK 156
           L GL   +   + P  +L          +G  + S              P    H  +  
Sbjct: 60  L-GLGPALAATAIPTHELRYI-----DQSGATVWSEPRGVEAGNA---YPQYSIHRGE-- 108

Query: 157 LNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKE 216
           L  +LL  + +                  L  + +  G     +   D    V+    ++
Sbjct: 109 LQMILLAAVRER-----------------LGQQAVRTGLGVERIEERDG--RVLIGA-RD 148

Query: 217 GKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQK---------LVSVHFLSKDLG 267
           G    + +  ++L+G DG  S VR      L  ++             +           
Sbjct: 149 GHGKPQALGADVLVGADGIHSAVRAH----LHPDQRPLSHGGITMWRGVTEFDRFLDGKT 204

Query: 268 DYLLNERPGMLFFIFNTEAIGVLVAHDLKEGE---FILQVPFYPPQQN------------ 312
             + N+        +      +   H  +      ++  VP     Q             
Sbjct: 205 MIVANDEHWSRLVAY-----PISARHAAEGKSLVNWVCMVPSAAVGQLDNEADWNRDGRL 259

Query: 313 ------LEDFSPEICEKLIFKLVG-------WELSDIDVIDIKPWVMHAEVAEKFLCCYN 359
                   D+     +  I  L+        + + D D +    W               
Sbjct: 260 EDVLPFFADWDLGWFD--IRDLLTRNQLILQYPMVDRDPLP--HWG------------RG 303

Query: 360 QIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKP 415
           +I L GDA H   P G  G +  + D   LA  +A    D+A A  L  YE  R+P
Sbjct: 304 RITLLGDAAHLMYPMGANGASQAILDGIELAAALAR-NADVAAA--LREYEEARRP 356

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379

 Score = 56.9 bits (138), Expect = 5e-09
 Identities = 65/413 (15%), Positives = 120/413 (29%), Gaps = 111/413 (26%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST-------HPQAHFINNRYALVFRKL 98
             + G G  GL  +I L + G    + EK+                     R   V   L
Sbjct: 14  AEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNG----LR---VLEGL 66

Query: 99  DGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLN 158
            G  +++ +       +  +     +    +                P  +   S   L+
Sbjct: 67  -GALDDVLQGSHTPPTYETW-----MHNKSVSKETFNGL--------PWRIMTRSH--LH 110

Query: 159 KLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGK 218
             L+ +   L                   G +I +  E V+                 G+
Sbjct: 111 DALVNRARAL-------------------GVDISVNSEAVAADPV-------------GR 138

Query: 219 CTERN---IQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVS---------VHFLSKDL 266
            T +    ++ ++++G DG GS VR  +G         Q             V  + K+L
Sbjct: 139 LTLQTGEVLEADLIVGADGVGSKVRDSIGFK-------QDRWVSKDGLIRLIVPRMKKEL 191

Query: 267 GDYLLNERPGMLFFIFNTEAIG-----------VLVAHDLKEGEFILQVPFYPPQQNLED 315
           G    +    M  F    + I             L+A         + +      +    
Sbjct: 192 GHGEWDNTIDMWNFWPRVQRILYSPCNENELYLGLMAPAADPRGSSVPIDLEVWVEMFPF 251

Query: 316 FSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAG 375
             P + E    K   ++  +   +D   W               ++ L GDA H   PA 
Sbjct: 252 LEPCLIEAAKLKTARYDKYETTKLD--SWT------------RGKVALVGDAAHAMCPAL 297

Query: 376 GFGMNTGVQDAHNLAWKIASVLKDIA-PASILNTYETERKPIAEFNTALSVQN 427
             G    + +    A+ ++  L++ +     L  +ET  +PI +   ALS   
Sbjct: 298 AQGAGCAMVN----AFSLSQDLEEGSSVEDALVAWETRIRPITDRCQALSGDY 346

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 5e-08
 Identities = 72/412 (17%), Positives = 126/412 (30%), Gaps = 137/412 (33%)

Query: 28  CRALSDS-KTIVSNEAVVPVLIVGAGPVG--LVLSILLTK--------LGIKCSVLEKN- 75
           C+ + D  K+I+S E +  +++      G   +   LL+K        +     VL  N 
Sbjct: 35  CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE---EVLRINY 91

Query: 76  ----KAFSTHPQA------HFINNRYAL-----VFRKLDGLAEEIERSQPPVDLWRK--- 117
                   T  +        +I  R  L     VF K +     + R QP + L R+   
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN-----VSRLQPYLKL-RQALL 145

Query: 118 --------FIY----C--TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLK 163
                    I        T V   +  S       DF+     +   +       + +L+
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK-----IFWLNLKNCNSPETVLE 200

Query: 164 QLEKLNFKICTSEGTEGLHN--------HLLQG--REILMGH---ECVSVSATD--QCIN 208
            L+KL ++I     T    +        H +Q   R +L       C+ V      Q   
Sbjct: 201 MLQKLLYQI-DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV--LLNVQNAK 257

Query: 209 VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHF---LSKD 265
              +F         N+ C IL+       T R     D +       +   H    L+ D
Sbjct: 258 AWNAF---------NLSCKILL-------TTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 266 LGDYL----LNERPGMLFFIFNTEAIGV------LVAHDLKEG----EFILQVPF----- 306
               L    L+ RP  L      E +        ++A  +++G    +    V       
Sbjct: 302 EVKSLLLKYLDCRPQDL----PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 307 ---------YPP--QQNLEDFS--PE---ICEKLIFKLVGW-ELSDIDVIDI 341
                     P   ++  +  S  P    I   L+  +  W ++   DV+ +
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI--WFDVIKSDVMVV 407

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 47/266 (17%), Positives = 86/266 (32%), Gaps = 69/266 (25%)

Query: 3   IAAFTRGLNCFSRIKTFPYPYGYTQCRALSDS-KTIVSNE--------AVVP--VLIVGA 51
           IA   R  +  +    + +         +  S   +   E        +V P    I   
Sbjct: 333 IAESIR--DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI--- 387

Query: 52  GPVGLVLSIL------------LTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLD 99
            P   +LS++            + KL  K S++EK    ST      I + Y  +  KL+
Sbjct: 388 -PTI-LLSLIWFDVIKSDVMVVVNKL-HKYSLVEKQPKESTI----SIPSIYLELKVKLE 440

Query: 100 GLAE---------EIERSQPPVDL----WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSP 146
                         I ++    DL      ++ Y        +G   H++  +  +    
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS------HIG--HHLKNIEHPE---- 488

Query: 147 VSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC 206
             +  F    L+   L+Q  K+     T+    G   + LQ  +    + C +    ++ 
Sbjct: 489 -RMTLFRMVFLDFRFLEQ--KIR-HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544

Query: 207 INVIASFLKEGKCTERNIQC---NIL 229
           +N I  FL   K  E  I     ++L
Sbjct: 545 VNAILDFLP--KIEENLICSKYTDLL 568

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 8e-04
 Identities = 63/473 (13%), Positives = 123/473 (26%), Gaps = 183/473 (38%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEI 105
           VLI G    G            K + +  +   S   Q       + L  +  +     +
Sbjct: 153 VLIDGVLGSG------------K-TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 106 ERSQPPVDLWRKFIYCTSVTGPILGSVDHMQ--PQDFEKVVSPVSVAHFSQYKLNKLLL- 162
           E  Q    L         +        DH          + + +             LL 
Sbjct: 200 EMLQ---KL------LYQIDPNWTSRSDHSSNIKLRIHSIQAELRR-LLKSKPYENCLLV 249

Query: 163 -------KQLEKLNFKIC----TS--------------------EGTEGLHNHLLQGREI 191
                  K     N   C    T+                      +  L     + + +
Sbjct: 250 LLNVQNAKAWNAFNLS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD--EVKSL 306

Query: 192 LMGHECVSVSATD----------QCINVIASFLKEGKCTE---RNIQCNILIGTDGAGST 238
           L+  + +     D          + +++IA  +++G  T    +++ C+ L       +T
Sbjct: 307 LL--KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL-------TT 357

Query: 239 VRKLVGIDLVGEKDLQKL------------VSVHFLS---------------KDLGDY-L 270
           + +   ++++   + +K+            +    LS                 L  Y L
Sbjct: 358 IIE-SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416

Query: 271 LNERPGMLFFIFNTEAIGVLVAHDL-------KEGEFILQ---VPFYPPQQNL--EDFSP 318
           + ++P           I +     +        E E+ L    V  Y   +    +D  P
Sbjct: 417 VEKQP-------KESTISI---PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466

Query: 319 EICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFG 378
              ++  +  +G  L +I+         H E    F      + L               
Sbjct: 467 PYLDQYFYSHIGHHLKNIE---------HPERMTLF----RMVFL--------------- 498

Query: 379 MNTGVQDAHNLAW---KI-ASVLKDIAPASILNT------YE---TERKPIAE 418
                    +  +   KI        A  SILNT      Y+    +  P  E
Sbjct: 499 ---------DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 44.7 bits (105), Expect = 3e-05
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
           +IVG+G  G V +  L KL  K  V+EK 
Sbjct: 4  YIIVGSGLFGAVCANELKKLNKKVLVIEKR 33

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 44.7 bits (105), Expect = 4e-05
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
          +LIVGAG  G V+   L + G +  ++++ 
Sbjct: 6  ILIVGAGFSGAVIGRQLAEKGHQVHIIDQR 35

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 44.4 bits (104), Expect = 5e-05
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEK 74
           LIVGAG  G VL+  L   G +  ++++
Sbjct: 32 YLIVGAGFAGSVLAERLASSGQRVLIVDR 60

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Length = 463

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 5/49 (10%)

Query: 39 SNEAVVPVLIVGAGPVGLVLSILLTKLG-----IKCSVLEKNKAFSTHP 82
          +   V  ++ VG GP  + L+I L +       ++   L+K   +  H 
Sbjct: 26 ATAVVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHG 74

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 376

 Score = 41.5 bits (96), Expect = 5e-04
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76
          +LIVGAG  GLV   LLT+ G   ++LE N 
Sbjct: 47 ILIVGAGIAGLVAGDLLTRAGHDVTILEANA 77

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 40.5 bits (94), Expect = 7e-04
 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 46 VLIVGAGPVGLVLS-ILLTKLGIKCSVLEK 74
          + +VG+G  GL ++  + T+L  +  VLE+
Sbjct: 10 LFVVGSGFFGLTIAERVATQLDKRVLVLER 39

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Length = 475

 Score = 40.7 bits (94), Expect = 8e-04
 Identities = 26/98 (26%), Positives = 40/98 (40%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEI 105
           V+I+G G    +LS LL+  G K  VL++N  +     +  + N Y     K +  ++  
Sbjct: 23  VIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIPSKYG 82

Query: 106 ERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKV 143
           E     VDL  KFI        IL         ++  V
Sbjct: 83  ENRHWNVDLIPKFILVGGNLVKILKKTRVTNYLEWLVV 120

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	455
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	100.0
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	100.0
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	100.0
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	100.0
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	100.0
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	100.0
4hb9_A	412	Similarities with probable monooxygenase; flavin,	100.0
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	100.0
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	100.0
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	100.0
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	100.0
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	100.0
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	100.0
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	100.0
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	100.0
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	100.0
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	100.0
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	100.0
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	100.0
3atr_A	453	Conserved archaeal protein; saturating double bond	100.0
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	100.0
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	100.0
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.97
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	99.97
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	99.96
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	99.96
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	99.96
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	99.93
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.91
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.77
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.66
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.63
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.62
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.6
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.58
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.58
3dme_A	369	Conserved exported protein; structural genomics, P	99.55
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.54
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.52
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.46
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.46
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.46
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.44
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.44
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.43
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.4
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.39
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.39
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.37
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.34
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.33
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.33
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.31
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	99.31
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.3
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.3
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.28
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.27
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.27
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	99.25
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.25
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.25
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.25
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.24
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.23
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	99.21
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.21
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.2
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.19
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.19
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.18
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.18
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.17
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.16
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.16
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.15
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	99.12
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.12
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.11
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.11
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.11
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.11
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.1
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.1
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.1
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.09
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.09
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.09
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.08
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.07
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	99.07
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.07
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	99.07
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.07
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.07
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	99.06
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.06
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.04
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.04
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.04
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.03
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.01
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.99
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.97
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.96
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.89
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.88
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.87
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.87
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.87
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.86
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.86
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.85
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	98.85
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.8
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.77
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.76
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.73
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.72
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.7
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.68
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.67
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.63
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.62
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.61
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.6
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.59
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.59
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.57
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.57
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.57
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.56
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.55
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.54
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.53
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.52
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.51
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.51
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.49
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.49
4dna_A	463	Probable glutathione reductase; structural genomic	98.49
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.48
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.48
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.48
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.47
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.47
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.46
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.46
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.46
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.46
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.44
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.43
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.43
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.42
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.41
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.4
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.4
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.4
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.39
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.38
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.36
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.35
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.35
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.35
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.35
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.35
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.34
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.33
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.33
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.31
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.31
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.3
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.29
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.29
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.29
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.27
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.25
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.25
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.24
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.22
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.21
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.21
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.19
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.19
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.18
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.18
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.17
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.17
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.14
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.13
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.13
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.1
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.09
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.08
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.07
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.07
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.06
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.05
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.05
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.05
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.05
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.05
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.04
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.04
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.04
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.03
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.02
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.01
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	98.01
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.01
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.0
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.0
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.99
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.99
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.98
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.98
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.97
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.97
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	97.96
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.96
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.96
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.95
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.94
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.93
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.93
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.92
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.92
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.92
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.92
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.9
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.89
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.86
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.82
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.81
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.8
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.75
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.74
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.73
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.72
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.68
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.67
4dna_A	463	Probable glutathione reductase; structural genomic	97.66
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.65
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.64
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.63
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.62
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.6
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.6
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.6
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.6
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.6
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.59
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.59
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.58
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.57
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.57
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.56
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.55
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.51
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.48
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.48
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.47
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.45
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.43
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.42
3r9u_A	315	Thioredoxin reductase; structural genomics, center	97.41
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	97.4
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.38
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.35
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.33
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.32
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	97.31
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	97.29
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.29
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.24
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.23
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	97.21
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.2
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.17
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.08
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.04
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	96.94
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	96.61
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	96.51
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	96.48
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	96.47
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.33
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.33
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	96.29
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	96.27
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.23
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.11
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	96.05
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.05
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	96.03
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.0
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	95.99
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	95.93
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	95.83
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	95.79
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	95.69
3qha_A	296	Putative oxidoreductase; seattle structural genomi	95.56
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	95.44
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	95.42
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.36
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	95.36
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	95.32
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	95.28
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	95.25
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.23
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	95.1
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	95.09
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	95.03
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	95.03
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	95.03
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	95.02
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	94.98
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	94.97
3tl2_A	315	Malate dehydrogenase; center for structural genomi	94.95
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	94.91
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	94.84
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	94.77
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	94.71
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	94.7
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	94.67
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	94.65
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	94.57
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	94.55
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	94.54
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	94.5
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	94.35
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	94.31
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	94.31
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	94.26
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	94.23
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	94.15
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	94.14
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	94.09
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	94.09
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	94.07
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	94.05
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	94.01
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	93.97
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	93.96
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	93.94
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	93.91
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	93.85
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	93.83
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	93.81
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	93.81
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	93.8
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	93.79
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	93.75
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	93.72
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	93.7
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	93.69
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	93.66
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	93.59
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	93.59
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	93.54
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	93.48
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	93.47
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	93.46
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	93.44
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	93.43
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	93.39
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	93.39
4ezb_A	317	Uncharacterized conserved protein; structural geno	93.39
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	93.36
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	93.34
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	93.33
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	93.33
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	93.3
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	93.29
4g65_A	461	TRK system potassium uptake protein TRKA; structur	93.27
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	93.25
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	93.21
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	93.2
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	93.15
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	93.11
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	93.1
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	93.09
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	93.03
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	92.88
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	92.86
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	92.81
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	92.8
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	92.76
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	92.71
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	92.66
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	92.61
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	92.56
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	92.48
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	92.45
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	92.45
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	92.43
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	92.34
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	92.34
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	92.27
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	92.27
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	92.26
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	92.2
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	92.18
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	92.16
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	92.1
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	92.04
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	91.99
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	91.9
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	91.88
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	91.87
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	91.87
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	91.83
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	91.79
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	91.74
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	91.73
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	91.73
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	91.65
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	91.57
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	91.53
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	91.53
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	91.52
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	91.51
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	91.51
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	91.47
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	91.47
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	91.42
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	91.4
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	91.32
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	91.18
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	91.18
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	91.17
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	91.11
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	91.09
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	91.05
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	91.02
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	91.0
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	90.93
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	90.91
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	90.85
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	90.78
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	90.77
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	90.63
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	90.61
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	90.6
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	90.57
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	90.53
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	90.53
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	90.38
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	90.38
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	90.35
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	90.2
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	90.2
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	90.18
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	90.15
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	90.09
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	90.07
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	89.97
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	89.92
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	89.92
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	89.88
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	89.87
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	89.82
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	89.72
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	89.72
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	89.69
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	89.65
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	89.16
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	89.58
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	89.54
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	89.5
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	89.5
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	89.5
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	89.45
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	89.44
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	89.38
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	89.35
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	89.28
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	89.08
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	89.04
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	88.95
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	88.92
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	88.87
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	88.79
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	88.53
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	88.52
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	88.48
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	88.48
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	88.47
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	88.45
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	88.44
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	88.42
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	88.39
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	88.39
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	88.32
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	88.31
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	88.28
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	88.27
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	88.22
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	88.14
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	88.04

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=100.00  E-value=7.6e-42  Score=354.48  Aligned_cols=363  Identities=31%  Similarity=0.461  Sum_probs=277.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceE-
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI-  119 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~-  119 (455)
                      +.++||+||||||+||++|+.|+++|++|+||||.+.+....++..+++++++.|+++ |+++.+...+.+......+. 
T Consensus         3 ~~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~l-Gl~~~~~~~~~~~~~~~~~~~   81 (535)
T 3ihg_A            3 DHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIG-GVADEVVRADDIRGTQGDFVI   81 (535)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHT-TCHHHHHHSCCSSCTTSCCEE
T ss_pred             CccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHc-CCHHHHHhhCCCcccccceee
Confidence            4578999999999999999999999999999999998888889999999999999999 99999988777654433222 


Q ss_pred             -EeecCCCCccccccCCCcc---ccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEecc
Q 012845          120 -YCTSVTGPILGSVDHMQPQ---DFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH  195 (455)
Q Consensus       120 -~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~  195 (455)
                       ......+..+.........   ... ...+.....++|..|.+.|.+.+.+.|+                   +|++++
T Consensus        82 ~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~l~~~L~~~a~~~gv-------------------~i~~~~  141 (535)
T 3ihg_A           82 RLAESVRGEILRTVSESFDDMVAATE-PCTPAGWAMLSQDKLEPILLAQARKHGG-------------------AIRFGT  141 (535)
T ss_dssp             EEESSSSSCEEEEEESCHHHHHHTTG-GGCSCCCBCCCHHHHHHHHHHHHHHTTC-------------------EEESSC
T ss_pred             eEEeccCCceeeeccccccccccccc-cCCCCcccccCHHHHHHHHHHHHHhCCC-------------------EEEeCC
Confidence             2333344433311100000   000 1113335678999999999999999886                   999999


Q ss_pred             EEEEeeecCC----ceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccc
Q 012845          196 ECVSVSATDQ----CINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLL  271 (455)
Q Consensus       196 ~v~~i~~~~~----~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (455)
                      +|++++.+++    ++.+++.   ++.+ ..++++|+||+|||.+|.+|+++|....+..+....+.+.+.. +.... .
T Consensus       142 ~v~~i~~~~~~~~~~v~v~~~---~~~~-~~~i~a~~vV~AdG~~S~vR~~lgi~~~~~~~~~~~~~~~~~~-~~~~~-~  215 (535)
T 3ihg_A          142 RLLSFRQHDDDAGAGVTARLA---GPDG-EYDLRAGYLVGADGNRSLVRESLGIGRYGHGTLTHMVGVIFDA-DLSGI-M  215 (535)
T ss_dssp             EEEEEEEECGGGCSEEEEEEE---ETTE-EEEEEEEEEEECCCTTCHHHHHTTCCEEEEEEEEEEEEEEEEC-CGGGT-S
T ss_pred             EEEEEEECCCCccccEEEEEE---cCCC-eEEEEeCEEEECCCCcchHHHHcCCCcCCCCccceEEEEEEec-cChhh-c
Confidence            9999999887    7777776   4433 3589999999999999999999998877666655555444433 22221 1


Q ss_pred             cCCCceEEEEEccCceEEEEeecCCCCeEEEEeecCCCC-CCCCCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEeceee
Q 012845          272 NERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEV  350 (455)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  350 (455)
                      ...+...++++.++...++++.+. ...+.+.+...... .....++.+.+.+.+++.++......++.....|++....
T Consensus       216 ~~~~~~~~~~~~p~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  294 (535)
T 3ihg_A          216 EPGTTGWYYLHHPEFKGTFGPTDR-PDRHTLFVEYDPDEGERPEDFTPQRCVELIGLALDAPEVKPELVDIQGWEMAARI  294 (535)
T ss_dssp             CTTCCEEEEEECSSCEEEEEECSS-TTEEEEEEEECTTTTCCGGGCCHHHHHHHHHHHHTCSSCCCEEEEEEEEEEEEEE
T ss_pred             cCCceEEEEEECCCceEEEEEecC-CCEEEEEEeeCccccCccccCCHHHHHHHHHHHhCCCCCceeEEEeeEeeeeEEE
Confidence            223445566667776666655443 24555555444332 3456778888899999888765555667777788888888


Q ss_pred             ecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHH
Q 012845          351 AEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRA  430 (455)
Q Consensus       351 ~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~  430 (455)
                      .+.|..  +||+|+|||||.|+|++|||+|+||+||..|+++|...+++.....+|+.|+++|+++++.+++.|+.+++.
T Consensus       295 a~~~~~--grv~LvGDAAH~~~P~~GqG~n~ai~DA~~La~~La~~l~g~~~~~lL~~Ye~eR~p~a~~~~~~s~~~~~~  372 (535)
T 3ihg_A          295 AERWRE--GRVFLAGDAAKVTPPTGGMSGNAAVADGFDLAWKLAAVLQGQAGAGLLDTYEDERKVAAELVVAEALAIYAQ  372 (535)
T ss_dssp             ESCSEE--TTEEECTTTTEECCSTTSCHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ECcccc--CCEEEEecccccCCCccCCccccccccHHHHHHHHHHHhcCCCcHHHHHhhHHHHHHHHHHHHHHHHHhhHh
Confidence            888875  999999999999999999999999999999999999988877788999999999999999999999999987


Q ss_pred             Hhc
Q 012845          431 AME  433 (455)
Q Consensus       431 ~~~  433 (455)
                      ++.
T Consensus       373 ~~~  375 (535)
T 3ihg_A          373 RMA  375 (535)
T ss_dssp             HTC
T ss_pred             hcc
Confidence            654

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=100.00  E-value=3.3e-40  Score=338.38  Aligned_cols=339  Identities=22%  Similarity=0.254  Sum_probs=246.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      ++++||+||||||+||++|+.|+++|++|+||||.+.+...+++..++++++++|+++ |+++++... .+   +....+
T Consensus         9 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~l-Gl~~~~~~~-~~---~~~~~~   83 (500)
T 2qa1_A            9 RSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQR-GILPRFGEV-ET---STQGHF   83 (500)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTT-TCGGGGCSC-CB---CCEEEE
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHC-CCHHHHHhc-cc---cccccc
Confidence            5679999999999999999999999999999999998888889999999999999999 998877554 21   111111


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                          .+..+   +..   ...  ........++|..|.+.|.+.+.+.|+                   +|+++++|+++
T Consensus        84 ----~~~~~---~~~---~~~--~~~~~~~~i~~~~l~~~L~~~~~~~gv-------------------~v~~~~~v~~i  132 (500)
T 2qa1_A           84 ----GGLPI---DFG---VLE--GAWQAAKTVPQSVTETHLEQWATGLGA-------------------DIRRGHEVLSL  132 (500)
T ss_dssp             ----TTEEE---EGG---GST--TGGGCEEEEEHHHHHHHHHHHHHHTTC-------------------EEEETCEEEEE
T ss_pred             ----cceec---ccc---cCC--CCCCceeecCHHHHHHHHHHHHHHCCC-------------------EEECCcEEEEE
Confidence                11111   000   000  001124668899999999999999886                   99999999999


Q ss_pred             eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEE
Q 012845          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF  280 (455)
Q Consensus       201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (455)
                      +.+++++.+++.   ++++ ++++++|+||+|||.+|.||+++|..+.+..+...++...+....        .+...++
T Consensus       133 ~~~~~~v~v~~~---~~~g-~~~~~a~~vVgADG~~S~VR~~lg~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~  200 (500)
T 2qa1_A          133 TDDGAGVTVEVR---GPEG-KHTLRAAYLVGCDGGRSSVRKAAGFDFPGTAATMEMYLADIKGVE--------LQPRMIG  200 (500)
T ss_dssp             EEETTEEEEEEE---ETTE-EEEEEESEEEECCCTTCHHHHHTTCCCCEECCCCEEEEEEEESCC--------CCCEEEE
T ss_pred             EEcCCeEEEEEE---cCCC-CEEEEeCEEEECCCcchHHHHHcCCCcCCCccceEEEEEEEEeCC--------CCCceEE
Confidence            998888888776   5544 357899999999999999999999877665555444444332221        1222344


Q ss_pred             EEccCceEEEEeecCCCCeEEEEeecCCC--CCCCCCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEeceeeecccccCC
Q 012845          281 IFNTEAIGVLVAHDLKEGEFILQVPFYPP--QQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY  358 (455)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (455)
                      .+.+++..++.+.  ..+.+.+.+.....  .......+.+.+.+.+++.++......+......|+......+.|..  
T Consensus       201 ~~~~~g~~~~~p~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--  276 (500)
T 2qa1_A          201 ETLPGGMVMVGPL--PGGITRIIVCERGTPPQRRETPPSWHEVADAWKRLTGDDIAHAEPVWVSAFGNATRQVTEYRR--  276 (500)
T ss_dssp             EEETTEEEEEEEE--TTTEEEEEEEETTCCC-----CCCHHHHHHHHHHHHSCCCTTSEEEEEEEEECCEEECSCSEE--
T ss_pred             EECCCcEEEEEEc--CCCEEEEEEEcCCCCCccccCCCCHHHHHHHHHHhcCCCCCccceeEEEEeccCcEEcccccc--
Confidence            5556655444444  34444444332221  12234567788888888877654333333333456666666777765  


Q ss_pred             CcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHH
Q 012845          359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA  431 (455)
Q Consensus       359 ~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~  431 (455)
                      +||+|+|||||.++|+.|||+|+||+||..|+++|...+++.....+|+.|+++|++++..++..++.+...+
T Consensus       277 grv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~~~~~~~~s~~~~~l~  349 (500)
T 2qa1_A          277 GRVILAGDSAHIHLPAGGQGMNTSIQDAVNLGWKLGAVVNGTATEELLDSYHSERHAVGKRLLMNTQAQGLLF  349 (500)
T ss_dssp             TTEEECGGGTEECCCCSSCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEccccCCCCccccchhhhHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999887766789999999999999999999887665443

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=100.00  E-value=4e-40  Score=337.64  Aligned_cols=339  Identities=22%  Similarity=0.253  Sum_probs=247.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      ++++||+||||||+||++|+.|+++|++|+||||.+.+...+++..++++++++|+++ |+++++... .+   +....+
T Consensus        10 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~l-Gl~~~~~~~-~~---~~~~~~   84 (499)
T 2qa2_A           10 RSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQR-GILPAFGPV-ET---STQGHF   84 (499)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHT-TCGGGGCSC-CE---ESEEEE
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHC-CCHHHHHhc-cc---ccccee
Confidence            4578999999999999999999999999999999998888889999999999999999 998877554 11   111110


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                          .+..+.. .     ...  ........++|..|.+.|.+.+.+.|+                   +|+++++|+++
T Consensus        85 ----~~~~~~~-~-----~~~--~~~~~~~~i~~~~l~~~L~~~~~~~gv-------------------~v~~~~~v~~i  133 (499)
T 2qa2_A           85 ----GGRPVDF-G-----VLE--GAHYGVKAVPQSTTESVLEEWALGRGA-------------------ELLRGHTVRAL  133 (499)
T ss_dssp             ----TTEEEEG-G-----GST--TCCCEEEEEEHHHHHHHHHHHHHHTTC-------------------EEEESCEEEEE
T ss_pred             ----cceeccc-c-----cCC--CCCCceEecCHHHHHHHHHHHHHhCCC-------------------EEEcCCEEEEE
Confidence                1111100 0     000  001124678999999999999999886                   99999999999


Q ss_pred             eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEE
Q 012845          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF  280 (455)
Q Consensus       201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (455)
                      +.+++++.+++.   ++++ ++++++|+||+|||.+|.||+++|..+.+..+...++...+....        .+...++
T Consensus       134 ~~~~~~v~v~~~---~~~g-~~~~~a~~vVgADG~~S~VR~~lg~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~  201 (499)
T 2qa2_A          134 TDEGDHVVVEVE---GPDG-PRSLTTRYVVGCDGGRSTVRKAAGFDFPGTSASREMFLADIRGCE--------ITPRPIG  201 (499)
T ss_dssp             EECSSCEEEEEE---CSSC-EEEEEEEEEEECCCTTCHHHHHTTCCCCEECCCCCEEEEEEESCC--------CCCEEEE
T ss_pred             EEeCCEEEEEEE---cCCC-cEEEEeCEEEEccCcccHHHHHcCCCCCCCCCccEEEEEEEEECC--------CCcceEE
Confidence            998888888777   5544 357899999999999999999999877665555444444333221        1222344


Q ss_pred             EEccCceEEEEeecCCCCeEEEEeecCC--CCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEeceeeecccccCC
Q 012845          281 IFNTEAIGVLVAHDLKEGEFILQVPFYP--PQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY  358 (455)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (455)
                      .+.+++..++++.  ..+.+.+.+....  ........+.+.+.+.+++.++......+......|+......+.|..  
T Consensus       202 ~~~~~g~~~~~P~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--  277 (499)
T 2qa2_A          202 ETVPLGMVMSAPL--GDGVDRIIVCERGAPARRRTGPPPYQEVAAAWQRLTGQDISHGEPVWVSAFGDPARQVSAYRR--  277 (499)
T ss_dssp             EEETTEEEEEEEC--SSSCEEEEEEETTCCCCCCSSSCCHHHHHHHHHHHHSCCCTTCEEEEEEEECCCEEECSCSEE--
T ss_pred             EECCCeEEEEEEc--CCCEEEEEEEecCCCCccccCCCCHHHHHHHHHHHhCCCCCccceeEEEEEeCCcEEcccccC--
Confidence            5556655444444  3444444433222  122334567788888888887654433333333456555566777764  


Q ss_pred             CcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHH
Q 012845          359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA  431 (455)
Q Consensus       359 ~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~  431 (455)
                      +||+|+|||||.|+|+.|||+|+||+||..|+++|...+++.....+|+.|+++|++++..++..++.+...+
T Consensus       278 grv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~~~~~~L~~Ye~eR~~~~~~~~~~s~~~~~l~  350 (499)
T 2qa2_A          278 GRVLLAGDSAHVHLPAGGQGMNVSVQDSVNLGWKLAAVVSGRAPAGLLDTYHEERHPVGRRLLMNTQAQGMLF  350 (499)
T ss_dssp             TTEEECGGGTEEECCCSSCHHHHHHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999887767789999999999999999999887665443

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=100.00  E-value=1.3e-39  Score=337.92  Aligned_cols=358  Identities=29%  Similarity=0.430  Sum_probs=250.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      +.++||+||||||+||++|+.|+++|++|+||||.+.+....++..+++++++.|+++ |+.+.+.+.+.+........+
T Consensus        24 ~~~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~l-Gl~~~~~~~~~~~~~~~~~~~  102 (549)
T 2r0c_A           24 PIETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRW-GVAKQIRTAGWPGDHPLDAAW  102 (549)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHT-TCHHHHHTSSCCTTSBCCEEE
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHc-CChHHHHhhcCCcccccceEE
Confidence            3468999999999999999999999999999999998888888999999999999999 999999887766533222222


Q ss_pred             eecCCCCccccccCCCccc-cccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEE
Q 012845          121 CTSVTGPILGSVDHMQPQD-FEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~  199 (455)
                      .....|..+...+...... ......+.....++|..|.+.|.+.+.+                     . |+++++|++
T Consensus       103 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~---------------------~-v~~~~~v~~  160 (549)
T 2r0c_A          103 VTRVGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGE---------------------R-LRTRSRLDS  160 (549)
T ss_dssp             ESSBTSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGG---------------------G-EECSEEEEE
T ss_pred             eccCCCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHH---------------------h-cccCcEEEE
Confidence            2223343332222111000 0000112334678999999999998876                     2 789999999


Q ss_pred             eeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEE
Q 012845          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF  279 (455)
Q Consensus       200 i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (455)
                      ++.+++++.+++...++|.  ..++++|+||+|||.+|.+|+++|..+.+..+.+.++...+........+ ...+...+
T Consensus       161 ~~~~~~~v~v~~~~~~~G~--~~~i~a~~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  237 (549)
T 2r0c_A          161 FEQRDDHVRATITDLRTGA--TRAVHARYLVACDGASSPTRKALGIDAPPRHRTQVFRNILFRAPELRSLL-GERAALFF  237 (549)
T ss_dssp             EEECSSCEEEEEEETTTCC--EEEEEEEEEEECCCTTCHHHHHHTCCCCBSSCCEEEEEEEEECTTHHHHH-GGGCCSEE
T ss_pred             EEEeCCEEEEEEEECCCCC--EEEEEeCEEEECCCCCcHHHHHcCCCCCCCcccceEEEEEEECCchHHhc-CCCCceEE
Confidence            9998888887776222242  34789999999999999999999988777666655554444432221111 11233445


Q ss_pred             EEEccC-ceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEeceeeecccccCC
Q 012845          280 FIFNTE-AIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY  358 (455)
Q Consensus       280 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (455)
                      +++.++ ...++++.+ ....|.+.++...  ..   ++.+.+.+.+++.++... ..++.....|++.....+.|..  
T Consensus       238 ~~~~p~~~~~~~~p~~-~~~~~~~~~~~~~--~~---~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~--  308 (549)
T 2r0c_A          238 FLMLSSSLRFPLRALD-GRGLYRLTVGVDD--AS---KSTMDSFELVRRAVAFDT-EIEVLSDSEWHLTHRVADSFSA--  308 (549)
T ss_dssp             EEEEETTEEEEEEESS-SSSEEEEEEECST--TC---CSCCCHHHHHHHHBCSCC-CCEEEEEEEEEECCEECSCSEE--
T ss_pred             EEECCCCcEEEEEEEC-CCcEEEEEecCCC--CC---CCHHHHHHHHHHHhCCCC-ceeEEEEecchhHhhhHHhhcC--
Confidence            555555 444444443 2345555543221  11   455667778888776532 2355566678877777777764  


Q ss_pred             CcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHhc
Q 012845          359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAME  433 (455)
Q Consensus       359 ~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~  433 (455)
                      +||+|+|||||.++|+.|||+|+||+||..|+++|...+++.....+|+.|+++|+++++.+++.|+.++..++.
T Consensus       309 grv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~a~~~lL~~Y~~eR~~~a~~~~~~s~~~~~~~~~  383 (549)
T 2r0c_A          309 GRVFLTGDAAHTLSPSGGFGMNTGIGSAADLGWKLAATLRGWAGPGLLATYEEERRPVAITSLEEANVNLRRTMD  383 (549)
T ss_dssp             TTEEECGGGTEECCCGGGHHHHHHHHHHHHHHHHHHHHHHTCSCTTTTHHHHHHHHHHHHHHHHC----------
T ss_pred             CcEEEEccccccCCCccCCccccccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999999999999988777778999999999999999999999988876653

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=100.00  E-value=9.4e-40  Score=339.33  Aligned_cols=345  Identities=24%  Similarity=0.301  Sum_probs=244.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      .+++||+||||||+||++|+.|+++|++|+||||.+.+....++..|+++++++|+++ |+++.+...+....... +  
T Consensus        47 ~~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~l-Gl~~~l~~~~~~~~~~~-~--  122 (570)
T 3fmw_A           47 ALTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLR-GLLDRFLEGTQVAKGLP-F--  122 (570)
T ss_dssp             ----CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTT-TCHHHHTTSCCBCSBCC-B--
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHc-CChHHHHhcCcccCCce-e--
Confidence            4578999999999999999999999999999999998888899999999999999999 99999977654332100 0  


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                          .+......+.   ....  ........+++..|.+.|.+.+.+.|+                   +|+++++|+++
T Consensus       123 ----~~~~~~~~~~---~~~~--~~~~~~~~i~~~~l~~~L~~~a~~~gv-------------------~i~~~~~v~~l  174 (570)
T 3fmw_A          123 ----AGIFTQGLDF---GLVD--TRHPYTGLVPQSRTEALLAEHAREAGA-------------------EIPRGHEVTRL  174 (570)
T ss_dssp             ----TTBCTTCCBG---GGSC--CSCCSBBCCCHHHHHHHHHHHHHHHTE-------------------ECCBSCEEEEC
T ss_pred             ----CCcccccccc---cccC--CCCCeeEEeCHHHHHHHHHHHHHhCCC-------------------EEEeCCEEEEE
Confidence                1110000000   0000  011124568999999999999999886                   99999999999


Q ss_pred             eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEE
Q 012845          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF  280 (455)
Q Consensus       201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (455)
                      +.+++++.+++.. .+|.   .++++|+||+|||.+|.+|+++|..+.+..+....+..........      .+  ..+
T Consensus       175 ~~~~~~v~v~~~~-~~G~---~~~~a~~vV~ADG~~S~vR~~lGi~~~~~~~~~~~~~~~v~~~~~~------~~--~~~  242 (570)
T 3fmw_A          175 RQDAEAVEVTVAG-PSGP---YPVRARYGVGCDGGRSTVRRLAADRFPGTEATVRALIGYVTTPERE------VP--RRW  242 (570)
T ss_dssp             CBCSSCEEEEEEE-TTEE---EEEEESEEEECSCSSCHHHHHTTCCCCCCCCCEEEEEEECCCCSCS------SC--CCC
T ss_pred             EEcCCeEEEEEEe-CCCc---EEEEeCEEEEcCCCCchHHHHcCCCCccceeeeEEEEEEEEecCCC------cc--eEE
Confidence            9988888887741 1331   3789999999999999999999988877776666555443322211      01  111


Q ss_pred             EEccCceEEEEeecCCCC---eEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEE-EeeceEeceeeeccccc
Q 012845          281 IFNTEAIGVLVAHDLKEG---EFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVI-DIKPWVMHAEVAEKFLC  356 (455)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  356 (455)
                      .+.+.+..++ .+|...+   ++.+..+...........+.+.+.+.+++.++......+.. ....|++.....+.|..
T Consensus       243 ~~~~~G~~~~-~~P~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  321 (570)
T 3fmw_A          243 ERTPDGILVL-AFPPEGGLGPGWSSSSTGHSPAADEGPVTLEDLGAAVARVRGTPLTLTEPVSWLSRFGDASRQAKRYRS  321 (570)
T ss_dssp             CCCCSSCEEE-CCCC------CEEEEEESCC-----CCCCHHHHHHHTTSSSSCCCCCCSCCEEEEEECCCCEECSCSEE
T ss_pred             EecCCEEEEE-EeecCCCeEEEEEEEeCCCCccccccCCCHHHHHHHHHHHhhcccccceeeeeeEEeeccccccccccc
Confidence            2333333322 1344434   34444432222233445667777777777666544433333 34456666677777775


Q ss_pred             CCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHh
Q 012845          357 CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAM  432 (455)
Q Consensus       357 ~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~  432 (455)
                        +||+|+|||||.++|++|||+|+||+||..|+++|.+.+++.....+|+.|+++|+++...++..++.+...+.
T Consensus       322 --grv~LvGDAAH~~~P~~GqG~n~gl~DA~~La~~La~~~~g~~~~~lL~~Ye~eR~~~~~~~~~~s~~~~~l~~  395 (570)
T 3fmw_A          322 --GRVLLAGDAAHVHFPIGGQGLNTGLQDAVNLGWKLAARVRGWGSEELLDTYHDERHPVAERVLLNTRAQLALMR  395 (570)
T ss_dssp             --TTEEECGGGTEECCCCSSCHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             --CCEEEEEecceecCCCcCcCHhHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence              99999999999999999999999999999999999998877778899999999999999999999987765544

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=100.00  E-value=2.6e-38  Score=334.23  Aligned_cols=359  Identities=22%  Similarity=0.308  Sum_probs=243.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHh-----CCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCccccc
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTK-----LGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWR  116 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~-----~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~  116 (455)
                      .++||+||||||+||++|+.|++     .|++|+||||.+.+...+++..|+++++++|+++ |+++.+...+.+.....
T Consensus         7 ~~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~gra~~l~~~tle~l~~l-Gl~~~l~~~~~~~~~~~   85 (665)
T 1pn0_A            7 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNL-GLADKILSEANDMSTIA   85 (665)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTT-TCHHHHHTTCBCCCEEE
T ss_pred             CCCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCCCceeEEChHHHHHHHHC-CCHHHHHHhccccceEE
Confidence            46899999999999999999999     9999999999988888889999999999999999 99999987666543221


Q ss_pred             ceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcc---cccccCCCcccccccccccceEEe
Q 012845          117 KFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLN---FKICTSEGTEGLHNHLLQGREILM  193 (455)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~i~~  193 (455)
                      .  +.....+........ ...  ...........++|..|++.|++.+.+.|   +                   +|++
T Consensus        86 ~--~~~~~~g~i~~~~~~-~~~--~~~~~~~~~~~l~q~~le~~L~~~~~~~g~~~v-------------------~v~~  141 (665)
T 1pn0_A           86 L--YNPDENGHIRRTDRI-PDT--LPGISRYHQVVLHQGRIERRILDSIAEISDTRI-------------------KVER  141 (665)
T ss_dssp             E--EEECTTSCEEEEEEE-ESS--CTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSS-------------------CEEC
T ss_pred             E--EeCCCCcceEeeccc-Ccc--cCCCCCCeeEEeeHHHHHHHHHHHHHhcCCCce-------------------EEEe
Confidence            1  111212222110000 000  00011223466899999999999999887   5                   8999


Q ss_pred             ccEEEEeeecC--------CceEEEEEecc--------------C-----------------------CcceeEEEEeCE
Q 012845          194 GHECVSVSATD--------QCINVIASFLK--------------E-----------------------GKCTERNIQCNI  228 (455)
Q Consensus       194 ~~~v~~i~~~~--------~~~~v~~~~~~--------------~-----------------------g~~~~~~~~~d~  228 (455)
                      +++|++++.++        ..+.+++....              +                       ..+..+++++|+
T Consensus       142 g~~v~~~~~d~~~~~~~~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~G~~~~i~A~~  221 (665)
T 1pn0_A          142 PLIPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKY  221 (665)
T ss_dssp             SEEEEEEEECGGGTTCTTCCCEEEEEEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEE
T ss_pred             CCEEEEEEecCcccccCCCCCEEEEEEecccccccccccccccccccccccccccccccccccccccCCCCceEEEEeCE
Confidence            99999998764        35666665210              0                       122235789999


Q ss_pred             EEeecCCCchhhhhcCCCccCCcccceeEEEEEec-CCcccccccCCCceEEEEEccCceEEEEeecCCCCeEEEEeecC
Q 012845          229 LIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLS-KDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFY  307 (455)
Q Consensus       229 vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (455)
                      ||+|||.+|.||+++|..+.+..+...+....... ...+     ......+....+.+..++++.  ..+.+.+.+.+.
T Consensus       222 VVGADG~~S~VR~~lg~~~~g~~~~~~~~v~d~~~~~~~p-----~~~~~~~~~~~~~g~~~~~P~--~~~~~r~~~~~~  294 (665)
T 1pn0_A          222 VIGCDGGHSWVRRTLGFEMIGEQTDYIWGVLDAVPASNFP-----DIRSRCAIHSAESGSIMIIPR--ENNLVRFYVQLQ  294 (665)
T ss_dssp             EEECCCTTCHHHHHHTCCCEEEEEEEEEEEEEEEEECCCT-----TTTSEEEEECSSSCEEEEEEC--STTCEEEEEEEC
T ss_pred             EEeccCCCCHHHHhcCCCCCCCCccEEEEEEEEEECCCCC-----CcceEEEEEeCCCceEEEEEc--CCCEEEEEEEeC
Confidence            99999999999999998766554433332222211 1111     111122222223444444444  334333333322


Q ss_pred             CCC-----CCCCCCCHHHHHHHHHHhhCCCCCCee-EEEeeceEeceeeecccccCCCcEEEEcCccccCCCCcCccchh
Q 012845          308 PPQ-----QNLEDFSPEICEKLIFKLVGWELSDID-VIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNT  381 (455)
Q Consensus       308 ~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~  381 (455)
                      ...     ......+.+.+.+.+++.++....... +.....|++..+..+.|.. .+||+|+|||||.++|+.|||||+
T Consensus       295 ~~~~~~~~~~~~~~t~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~~~~~-~gRV~L~GDAAH~~~P~~GqG~N~  373 (665)
T 1pn0_A          295 ARAEKGGRVDRTKFTPEVVIANAKKIFHPYTFDVQQLDWFTAYHIGQRVTEKFSK-DERVFIAGDACHTHSPKAGQGMNT  373 (665)
T ss_dssp             C----------CCCCHHHHHHHHHHHHTTSCCEEEEEEEEEEEEEEEEECSCSEE-TTTEEECGGGTEECCSTTCCHHHH
T ss_pred             CccccccccCcCCCCHHHHHHHHHHHhCcccCceeeEEEEEeeeccceehhhccc-CCCEEEEECccccCCCcccCCcch
Confidence            211     123456777788878777653221221 2222344555566777751 399999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHhc
Q 012845          382 GVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAME  433 (455)
Q Consensus       382 Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~  433 (455)
                      ||+||..|+++|...+++.....+|+.|+++|+++++.++..++.+.+.+..
T Consensus       374 gi~DA~nLawkLa~vl~g~a~~~lL~tYe~eR~p~a~~~i~~s~~~~~l~~~  425 (665)
T 1pn0_A          374 SMMDTYNLGWKLGLVLTGRAKRDILKTYEEERQPFAQALIDFDHQFSRLFSG  425 (665)
T ss_dssp             HHHHHHHHHHHHHHHHTTCBCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999988877778999999999999999999999887776653

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=100.00  E-value=7.9e-39  Score=320.44  Aligned_cols=354  Identities=22%  Similarity=0.204  Sum_probs=211.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC--CcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEe
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH--PQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~--~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~  121 (455)
                      .+|+||||||+||++|+.|+++|++|+||||.+.+...  +.++.+.+++++.|+++ |+.+.+................
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~l-g~~~~~~~~~~~~~~~~~~~~~   80 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQEC-LPAENWLAFEEASRYIGGQSRF   80 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHH-SCHHHHHHHHHHCEEECCCCEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHc-CChHHHHHhhhhhcccCcceeE
Confidence            47999999999999999999999999999999887655  45667889999999999 8887664321111000000011


Q ss_pred             ecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEee
Q 012845          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (455)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~  201 (455)
                      ....+.............  ..........+.|..|.+.|.+.+..                      .|+++++|++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~R~~L~~~L~~~~~~----------------------~v~~~~~v~~~~  136 (412)
T 4hb9_A           81 YNERMRLLAVHGGISPMA--GKIISEQRLSISRTELKEILNKGLAN----------------------TIQWNKTFVRYE  136 (412)
T ss_dssp             ECTTSCEEEC----------------CEEEEEHHHHHHHHHTTCTT----------------------TEECSCCEEEEE
T ss_pred             ecCCcceecccCCccccc--cccccccceEeeHHHHHHHHHhhccc----------------------eEEEEEEEEeee
Confidence            111222221111111000  00112224567899999988765422                      789999999998


Q ss_pred             ecCC-ceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCC-cccc-cccCCCceE
Q 012845          202 ATDQ-CINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKD-LGDY-LLNERPGML  278 (455)
Q Consensus       202 ~~~~-~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~  278 (455)
                      ..++ .+.+++.   +|+    ++++|+||+|||.+|.||++++............+........ .... .........
T Consensus       137 ~~~~~~v~v~~~---dG~----~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (412)
T 4hb9_A          137 HIENGGIKIFFA---DGS----HENVDVLVGADGSNSKVRKQYLPFIERFDVGVSMIIGRARLTPALTALLPQNFRDGTP  209 (412)
T ss_dssp             ECTTSCEEEEET---TSC----EEEESEEEECCCTTCHHHHHHSTTCCCEEEEEEEEEEEEECCHHHHHHSCGGGTSSCC
T ss_pred             EcCCCeEEEEEC---CCC----EEEeeEEEECCCCCcchHHHhCCCccccccceeEEEEEEecchhhhcchhhhhccCCc
Confidence            7554 5667766   776    7899999999999999999997655443333222222221110 0000 000011111


Q ss_pred             EEEEccCceEEE---Eeec---------CCCCeEEEEe---ecCCCCCCCCCCCHHHHHHHHHHhhC-CCCCCeeE----
Q 012845          279 FFIFNTEAIGVL---VAHD---------LKEGEFILQV---PFYPPQQNLEDFSPEICEKLIFKLVG-WELSDIDV----  338 (455)
Q Consensus       279 ~~~~~~~~~~~~---~~~~---------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~----  338 (455)
                      ...........+   +..+         .....+.+.+   ..........+++.+.+.+.+.+.+. |.+....+    
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~li~~~  289 (412)
T 4hb9_A          210 NSIVPKSPDWLFISMWRAPVNIHVEASLAEIDNFIVWVYVAATDSLPDNITDFSAEALCDLVQSRMISWDPSLHTLVQQS  289 (412)
T ss_dssp             EEECCSSSEEEEEEEEEEESCTTSCGGGCCEEEEEEEEEEEEGGGSCTTGGGCCHHHHHHHHHHHTTTSCHHHHHHHHTS
T ss_pred             ceEeecCCCcceeeeeecCCceeEEEeccCCCceEEEEEecccccccccccccchHHHHHHHHHHhccCChHHHHHHHhc
Confidence            111111111110   1111         1111222211   11222234456666666666665443 22111000    


Q ss_pred             --EEeeceEece-eeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCC-CchhhhhHHHhhh
Q 012845          339 --IDIKPWVMHA-EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIA-PASILNTYETERK  414 (455)
Q Consensus       339 --~~~~~~~~~~-~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~-~~~al~~Y~~~r~  414 (455)
                        ....++.... .....|.  .+||+|||||||.|+|+.|||+|+||+||..|+++|.+..++.. ...+|+.|+++|+
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~--~grv~LiGDAAH~~~P~~GqG~n~ai~DA~~La~~L~~~~~~~~~~~~aL~~Ye~~R~  367 (412)
T 4hb9_A          290 DMENISPLHLRSMPHLLPWK--SSTVTLLGDAIHNMTPMTGSGANTALRDALLLTQKLASVASGHEELVKAISDYEQQMR  367 (412)
T ss_dssp             CTTCCEEEEEEECCCCCCCC--CCSEEECTHHHHCSSCCSSSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             ccceeccchhcccccccccc--ccCEEEEEcccccCCCchhhHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Confidence              0111222221 2233444  49999999999999999999999999999999999999876543 4789999999999


Q ss_pred             HHHHHhHHhHHHHHHHH
Q 012845          415 PIAEFNTALSVQNFRAA  431 (455)
Q Consensus       415 ~~~~~~~~~s~~~~~~~  431 (455)
                      ++++.+++.|+++...+
T Consensus       368 ~~~~~~~~~s~~~~~~~  384 (412)
T 4hb9_A          368 AYANEIVGISLRSAQNA  384 (412)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999998887643

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=100.00  E-value=3.3e-38  Score=316.26  Aligned_cols=342  Identities=16%  Similarity=0.169  Sum_probs=225.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      ++++||+||||||+||++|+.|+++|++|+||||.+.+...++++.+.+++++.|+++ |+++.+...+.+...   ..+
T Consensus        21 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~l-g~~~~~~~~~~~~~~---~~~   96 (407)
T 3rp8_A           21 QGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHL-GMGDIMETFGGPLRR---MAY   96 (407)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHT-TCHHHHHHHSCCCCE---EEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHC-CCHHHHHhhcCCCcc---eEE
Confidence            4579999999999999999999999999999999998888889999999999999999 999999887765532   222


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                      .....|..+...+...   ... ........++|..|.+.|.+.+.+  +                   +|+++++|+++
T Consensus        97 ~~~~~g~~~~~~~~~~---~~~-~~~~~~~~i~r~~l~~~L~~~~~~--~-------------------~i~~~~~v~~i  151 (407)
T 3rp8_A           97 RDFRSGENMTQFSLAP---LIE-RTGSRPCPVSRAELQREMLDYWGR--D-------------------SVQFGKRVTRC  151 (407)
T ss_dssp             EETTTCCEEEEEECHH---HHH-HHSSCCEEEEHHHHHHHHHHHHCG--G-------------------GEEESCCEEEE
T ss_pred             EECCCCCEeEEecchh---hhh-hcCCceEEEEHHHHHHHHHHhCCc--C-------------------EEEECCEEEEE
Confidence            2222244333322110   000 001235678999999999999877  4                   89999999999


Q ss_pred             eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhc-CCCccCCcccceeEEEEEecCCcccccccCCCceEE
Q 012845          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLV-GIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF  279 (455)
Q Consensus       201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (455)
                      +.+++++.+++.   +|+    ++++|+||+|||.+|.+|+++ +............+........     .......+.
T Consensus       152 ~~~~~~v~v~~~---~g~----~~~a~~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  219 (407)
T 3rp8_A          152 EEDADGVTVWFT---DGS----SASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGLVEIDE-----ALAPGDQWT  219 (407)
T ss_dssp             EEETTEEEEEET---TSC----EEEESEEEECCCTTCSSHHHHHSSCCCCEEEEEEEEEEEEECCT-----TTCCTTEEE
T ss_pred             EecCCcEEEEEc---CCC----EEeeCEEEECCCcChHHHHHhcCCCCCCcccCcEEEEEEEeccc-----ccCCCCceE
Confidence            998888887776   665    789999999999999999999 6432221111111111111111     011223333


Q ss_pred             EEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhC-CCCC---------CeeEEEeeceEecee
Q 012845          280 FIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVG-WELS---------DIDVIDIKPWVMHAE  349 (455)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~---------~~~~~~~~~~~~~~~  349 (455)
                      .++.+++..+++  |...+...+.+....+...  ..+.+...+.+.+.+. +...         .........++.  .
T Consensus       220 ~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  293 (407)
T 3rp8_A          220 TFVGEGKQVSLM--PVSAGRFYFFFDVPLPAGL--AEDRDTLRADLSRYFAGWAPPVQKLIAALDPQTTNRIEIHDI--E  293 (407)
T ss_dssp             EEEETTEEEEEE--EETTTEEEEEEEEECCTTC--SCCTTTHHHHHHHHTTTCCHHHHHHHHHSCGGGCEEEEEEEC--C
T ss_pred             EEECCCcEEEEE--EcCCCeEEEEEEeCCCcCC--CCCchhHHHHHHHHhcCCChHHHHHHHcCCccceeEEeeEec--C
Confidence            444555554444  4445555555443222211  1122223333333322 2110         001111111222  1


Q ss_pred             eecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHH
Q 012845          350 VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR  429 (455)
Q Consensus       350 ~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~  429 (455)
                      ....|..  +||+|||||||.++|++|||+|+||+||..|+++|.+.  + +...+|+.|++.|++++..+++.|+...+
T Consensus       294 ~~~~~~~--~rv~LvGDAAh~~~P~~GqG~~~al~da~~La~~L~~~--~-~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~  368 (407)
T 3rp8_A          294 PFSRLVR--GRVALLGDAGHSTTPDIGQGGCAAMEDAVVLGAVFRQT--R-DIAAALREYEAQRCDRVRDLVLKARKRCD  368 (407)
T ss_dssp             CCSCCEE--TTEEECGGGTCCCCGGGSCHHHHHHHHHHHHHHHHHSC--C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCceec--CCEEEEEcccccCCcchhhhHHHHHHHHHHHHHHHhcC--C-CHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            2255553  89999999999999999999999999999999999853  2 56789999999999999999999999988


Q ss_pred             HHhcc
Q 012845          430 AAMEV  434 (455)
Q Consensus       430 ~~~~~  434 (455)
                      .++..
T Consensus       369 ~~~~~  373 (407)
T 3rp8_A          369 ITHGK  373 (407)
T ss_dssp             HHTTT
T ss_pred             hhhcC
Confidence            77643

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=100.00  E-value=2.1e-37  Score=326.65  Aligned_cols=352  Identities=22%  Similarity=0.309  Sum_probs=234.0

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHh-CCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTK-LGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~-~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~  119 (455)
                      ..++||+||||||+||++|+.|++ .|++|+||||.+.+...+++..++++++++|+++ |+.+.+...+.+....   .
T Consensus        30 ~~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~l-Gl~~~~~~~~~~~~~~---~  105 (639)
T 2dkh_A           30 PSQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAF-EFADSILKEACWINDV---T  105 (639)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHT-TCHHHHHHHSEEECEE---E
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHc-CcHHHHHHhcccccce---E
Confidence            457899999999999999999999 9999999999998888889999999999999999 9999987765443221   1


Q ss_pred             EeecC---CCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccE
Q 012845          120 YCTSV---TGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHE  196 (455)
Q Consensus       120 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~  196 (455)
                      +....   .+........ ....  ..........++|..|.+.|.+.+.+.|+.                 ++|+++++
T Consensus       106 ~~~~~~~~~g~~~~~~~~-~~~~--~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~-----------------v~v~~~~~  165 (639)
T 2dkh_A          106 FWKPDPGQPGRIARHGRV-QDTE--DGLSEFPHVILNQARVHDHYLERMRNSPSR-----------------LEPHYARR  165 (639)
T ss_dssp             EEEECTTSTTCEEEEEEE-ESSC--TTSCSSCEEECCHHHHHHHHHHHHHHSTTC-----------------CCCBCSEE
T ss_pred             EECCCCCCCcceEeeccc-Cccc--CCCCCCceEeeCHHHHHHHHHHHHHhCCCC-----------------cEEecCCE
Confidence            11110   1221110000 0000  000122245689999999999999998731                 38999999


Q ss_pred             EEEeeecCC----ceEEEEEec---cCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEec-CCccc
Q 012845          197 CVSVSATDQ----CINVIASFL---KEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLS-KDLGD  268 (455)
Q Consensus       197 v~~i~~~~~----~~~v~~~~~---~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~-~~~~~  268 (455)
                      |++++.+++    .+.+++...   .+|.  ..++++|+||+|||.+|.||+++|....+..+...+....... ...+ 
T Consensus       166 v~~l~~~~~~~~~~v~v~~~~~~~~~~G~--~~~i~a~~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~~~~~~~~~p-  242 (639)
T 2dkh_A          166 VLDVKVDHGAADYPVTVTLERCDAAHAGQ--IETVQARYVVGCDGARSNVRRAIGRQLVGDSANQAWGVMDVLAVTDFP-  242 (639)
T ss_dssp             EEEEEECTTCSSCCEEEEEEECSGGGTTC--EEEEEEEEEEECCCTTCHHHHHTTCCCEECSCSCCEEEEEEEEEECCT-
T ss_pred             EEEEEECCCCCcCCEEEEEEeccccCCCC--eEEEEeCEEEECCCcchHHHHHhCCCCCCCCccceEEEEEEEEccCCC-
Confidence            999988653    466665520   1232  3478999999999999999999998766555444333322211 1111 


Q ss_pred             ccccCCCceEEEEEccCceEEEEeecCCCC-eEEEEeecCC--CC--CCCCCCCHHHHHHHHHHhhCCCCCCeeEEEe--
Q 012845          269 YLLNERPGMLFFIFNTEAIGVLVAHDLKEG-EFILQVPFYP--PQ--QNLEDFSPEICEKLIFKLVGWELSDIDVIDI--  341 (455)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--  341 (455)
                          .......+.. +.+..+++  |...+ .+.+.+....  ..  ......+.+.+.+.+++.++..  ..++...  
T Consensus       243 ----~~~~~~~~~~-~~g~~~~~--P~~~~~~~r~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~--~~~~~~~~~  313 (639)
T 2dkh_A          243 ----DVRYKVAIQS-EQGNVLII--PREGGHLVRFYVEMDKLDADERVASRNITVEQLIATAQRVLHPY--KLEVKNVPW  313 (639)
T ss_dssp             ----TTTSEEEEEE-TTEEEEEE--ECTTSSCEEEEEECC-----------CCCHHHHHHHHHHHHTTS--CEEEEEEEE
T ss_pred             ----ccceeEEEEc-CCceEEEE--EcCCCcEEEEEEECCCcCcccccccCCCCHHHHHHHHHHHhCcc--cCcceeeeE
Confidence                1111222222 44444443  33333 3333332221  11  1233456777777777766532  1222222  


Q ss_pred             -eceEeceeeecccc----------cCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHH
Q 012845          342 -KPWVMHAEVAEKFL----------CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYE  410 (455)
Q Consensus       342 -~~~~~~~~~~~~~~----------~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~  410 (455)
                       ..|++..+..+.|.          ...+||+|+|||||.++|+.|||+|+||+||..|+++|...+++.....+|+.|+
T Consensus       314 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~gRV~L~GDAAH~~~P~~GqG~n~ai~DA~nLawkLa~vl~g~a~~~lL~~Ye  393 (639)
T 2dkh_A          314 WSVYEIGQRICAKYDDVVDAVATPDSPLPRVFIAGDACHTHSPKAGQGMNFSMQDSFNLGWKLAAVLRKQCAPELLHTYS  393 (639)
T ss_dssp             EEEECCCCEECSCSBSCCCSSCCTTSCCCCEEECGGGTEECCGGGCCTTHHHHHHHHHHHHHHHHHHTTSBCGGGGHHHH
T ss_pred             EEecccccchhhhhhccccccccccCccCcEEEEecccccCCCcccccchhhHHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence             23333445555654          0149999999999999999999999999999999999999887767788999999


Q ss_pred             HhhhHHHHHhHHhHHHHH
Q 012845          411 TERKPIAEFNTALSVQNF  428 (455)
Q Consensus       411 ~~r~~~~~~~~~~s~~~~  428 (455)
                      ++|+++++.+++.++.+.
T Consensus       394 ~eR~~~a~~~~~~s~~~~  411 (639)
T 2dkh_A          394 SERQVVAQQLIDFDREWA  411 (639)
T ss_dssp             HHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999887543

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=100.00  E-value=4.9e-37  Score=306.70  Aligned_cols=352  Identities=16%  Similarity=0.142  Sum_probs=223.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC-CCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~-~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~  119 (455)
                      +.++||+||||||+||++|+.|+++|++|+||||.+.+ ...+++..+.+++++.|+.+ |+.+  .....+..   ...
T Consensus         3 ~~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~-g~~~--~~~~~~~~---~~~   76 (397)
T 2vou_A            3 PTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQ-GVEL--DSISVPSS---SME   76 (397)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHT-TCCG--GGTCBCCC---EEE
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHc-CCcc--cccccccc---ceE
Confidence            45689999999999999999999999999999999775 44567888999999999999 8876  33333321   111


Q ss_pred             EeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEE
Q 012845          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (455)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~  199 (455)
                      +.....|..+...+.           +  ...+.+..|.+.|.+.+  .|+                   +|+++++|++
T Consensus        77 ~~~~~~g~~~~~~~~-----------~--~~~~~~~~l~~~L~~~~--~~~-------------------~i~~~~~v~~  122 (397)
T 2vou_A           77 YVDALTGERVGSVPA-----------D--WRFTSYDSIYGGLYELF--GPE-------------------RYHTSKCLVG  122 (397)
T ss_dssp             EEETTTCCEEEEEEC-----------C--CCEEEHHHHHHHHHHHH--CST-------------------TEETTCCEEE
T ss_pred             EEecCCCCccccccC-----------c--ccccCHHHHHHHHHHhC--CCc-------------------EEEcCCEEEE
Confidence            211113333221110           1  12356778888888775  244                   8999999999


Q ss_pred             eeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecC-CcccccccCCCceE
Q 012845          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSK-DLGDYLLNERPGML  278 (455)
Q Consensus       200 i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  278 (455)
                      ++.+++++.+++.   +|+    ++++|+||+|||.+|.+|++++ +.. ..+............ ..............
T Consensus       123 i~~~~~~v~v~~~---~g~----~~~ad~vV~AdG~~S~vr~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (397)
T 2vou_A          123 LSQDSETVQMRFS---DGT----KAEANWVIGADGGASVVRKRLL-GIE-PTYAGYVTWRGVLQPGEVADDVWNYFNDKF  193 (397)
T ss_dssp             EEECSSCEEEEET---TSC----EEEESEEEECCCTTCHHHHHHH-CCC-CEEEEEEEEEEEECTTSSCHHHHHHHTTEE
T ss_pred             EEecCCEEEEEEC---CCC----EEECCEEEECCCcchhHHHHhc-cCC-CCccceEEEEEEeeccccChhhhhhhcCce
Confidence            9988888877765   665    7899999999999999999997 432 222111111111211 11110000001122


Q ss_pred             EEEEccCceEEEEeecCCCC----e--EEEEeecCCCC--C-CC--------------CCCCHHHHHHHHHHhhC-CCCC
Q 012845          279 FFIFNTEAIGVLVAHDLKEG----E--FILQVPFYPPQ--Q-NL--------------EDFSPEICEKLIFKLVG-WELS  334 (455)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~--~-~~--------------~~~~~~~~~~~l~~~~~-~~~~  334 (455)
                      .+...+++...+++.+...+    .  +.|..+.....  . ..              ...+++.+.+++..+.. +.. 
T Consensus       194 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  272 (397)
T 2vou_A          194 TYGLLDDGHLIAYPIPGRENAESPRLNFQWYWNVAEGPDLDELMTDVRGIRLPTSVHNNSLNPHNLRQFHSKGESLFKP-  272 (397)
T ss_dssp             EEEEETTEEEEEEEECCSSTTSCCEEEEEEEEECCTTHHHHHHTBCTTSCBCSSEECGGGCCHHHHHHHHHHHTTSCHH-
T ss_pred             eEEecCCCEEEEEECCCCCCccceeEEEEEEecCCCccchhhhccCCCCcccccccCcccCCHHHHHHHHHHHHhhChH-
Confidence            33334444444444443322    2  34443322100  0 00              00133444444433321 111 


Q ss_pred             CeeEE----EeeceEeceeeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHH
Q 012845          335 DIDVI----DIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYE  410 (455)
Q Consensus       335 ~~~~~----~~~~~~~~~~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~  410 (455)
                      ..+++    ....+++.....+.|..  +||+|||||||.|+|+.|||+|+||+||..|+++|..   ..+...+|+.|+
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~--grv~LiGDAAH~~~P~~GqG~n~ai~DA~~La~~L~~---~~~~~~~L~~Ye  347 (397)
T 2vou_A          273 FRDLVLNASSPFVTVVADATVDRMVH--GRVLLIGDAAVTPRPHAAAGGAKASDDARTLAEVFTK---NHDLRGSLQSWE  347 (397)
T ss_dssp             HHHHHHHCSSCEEEEEEEBCCSCSEE--TTEEECGGGTSBCCGGGSCHHHHHHHHHHHHHHHHHH---CSCHHHHHHHHH
T ss_pred             HHHHHhccCCcceeeeeeecCCceec--CcEEEEeccccccCCcchhhHHHHHHHHHHHHHHHhc---CCCHHHHHHHHH
Confidence            00100    01123444334455654  9999999999999999999999999999999999975   334578999999


Q ss_pred             HhhhHHHHHhHHhHHHHHHHHhccccccCCCcccccc
Q 012845          411 TERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANS  447 (455)
Q Consensus       411 ~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  447 (455)
                      ++|++++..++..|+.....++..+...-.|++.+..
T Consensus       348 ~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~d~~~~~~  384 (397)
T 2vou_A          348 TRQLQQGHAYLNKVKKMASRLQHGGSFEPGNPAFAFG  384 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTCCCCTTCGGGSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccCCCCChhHhcc
Confidence            9999999999999999988887665566666666643

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=100.00  E-value=1.1e-37  Score=311.53  Aligned_cols=340  Identities=19%  Similarity=0.206  Sum_probs=230.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEe
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~  121 (455)
                      .++||+||||||+|+++|+.|+++|++|+||||.+.+...+++..+.+++.+.|+++ |+++.+.....+....   .+.
T Consensus         5 ~~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~-g~~~~~~~~~~~~~~~---~~~   80 (399)
T 2x3n_A            5 NHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAA-GLLAEVTRRGGRVRHE---LEV   80 (399)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHT-TCHHHHHHTTCEEECE---EEE
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHc-CcHHHHHHhCCCccee---EEE
Confidence            468999999999999999999999999999999988777888999999999999999 9999887655443221   111


Q ss_pred             ecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhc-ccccccCCCcccccccccccceEEeccEEEEe
Q 012845          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                       ...|......+....      ..+.....++|..|.+.|.+.+.+. |+                   +|+++++|+++
T Consensus        81 -~~~g~~~~~~~~~~~------~~~~~~~~~~r~~l~~~L~~~~~~~~gv-------------------~i~~~~~v~~i  134 (399)
T 2x3n_A           81 -YHDGELLRYFNYSSV------DARGYFILMPCESLRRLVLEKIDGEATV-------------------EMLFETRIEAV  134 (399)
T ss_dssp             -EETTEEEEEEETTSS------CGGGCEEECCHHHHHHHHHHHHTTCTTE-------------------EEECSCCEEEE
T ss_pred             -eCCCCEEEecchHHh------cccCccccccHHHHHHHHHHHhhhcCCc-------------------EEEcCCEEEEE
Confidence             112322221111100      0012246789999999999999987 76                   99999999999


Q ss_pred             eecCCce--EEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCC--cccc--eeEEEEEecCCcccccccCC
Q 012845          201 SATDQCI--NVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGE--KDLQ--KLVSVHFLSKDLGDYLLNER  274 (455)
Q Consensus       201 ~~~~~~~--~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~  274 (455)
                      +.+++++  .+++.   +|+    ++++|+||+|||.+|.+|+.++......  .+.+  ..+.. ......     + .
T Consensus       135 ~~~~~~v~g~v~~~---~g~----~~~ad~vV~AdG~~s~vr~~lg~~~~~~~p~~~~~~~~~~~-~~~~~~-----~-~  200 (399)
T 2x3n_A          135 QRDERHAIDQVRLN---DGR----VLRPRVVVGADGIASYVRRRLLDIDVERRPYPSPMLVGTFA-LAPCVA-----E-R  200 (399)
T ss_dssp             EECTTSCEEEEEET---TSC----EEEEEEEEECCCTTCHHHHHTSCCCCCCCCCSSCEEEEEEE-CCHHHH-----H-C
T ss_pred             EEcCCceEEEEEEC---CCC----EEECCEEEECCCCChHHHHHhCCCccccCCCCCCceEEEEE-EecCCC-----C-C
Confidence            9888877  67665   665    7899999999999999999998665433  2222  22221 111110     1 1


Q ss_pred             CceEEEEEcc-CceEEEEeecCCCCeEEEEeecCCCC-CCC-CCCCHHHHHHHHHHhhCCCC--CCeeEE---EeeceEe
Q 012845          275 PGMLFFIFNT-EAIGVLVAHDLKEGEFILQVPFYPPQ-QNL-EDFSPEICEKLIFKLVGWEL--SDIDVI---DIKPWVM  346 (455)
Q Consensus       275 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~~~~~~~~--~~~~~~---~~~~~~~  346 (455)
                      .  . ..+.+ ++..++++.+  ...+.|.+...... ... ...+.+.+.+.+..+ ....  ..++..   ....|++
T Consensus       201 ~--~-~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  274 (399)
T 2x3n_A          201 N--R-LYVDSQGGLAYFYPIG--FDRARLVVSFPREEARELMADTRGESLRRRLQRF-VGDESAEAIAAVTGTSRFKGIP  274 (399)
T ss_dssp             E--E-EEECTTSCEEEEEEET--TTEEEEEEECCHHHHHHHHHSTTSHHHHHHHHTT-CCGGGHHHHHTCCCSTTCEECC
T ss_pred             c--c-EEEcCCCcEEEEEEcC--CCEEEEEEEeCccccccccccCCHHHHHHHHhhc-CCcchhhHHhcCCccceEEech
Confidence            1  2 44555 5555554443  36666665321110 000 012334455555432 1111  111111   1123444


Q ss_pred             ce-eeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHc-CCCCchhhhhHHHhhhHHHHHhHHhH
Q 012845          347 HA-EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-DIAPASILNTYETERKPIAEFNTALS  424 (455)
Q Consensus       347 ~~-~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~-~~~~~~al~~Y~~~r~~~~~~~~~~s  424 (455)
                      .. ...+.|..  +||+|||||||.|+|++|||+|+||+||..|+++|.+.++ +.+...+|+.|++.|++++..++..+
T Consensus       275 ~~~~~~~~~~~--~rv~lvGDAAh~~~P~~GqG~~~al~da~~La~~L~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s  352 (399)
T 2x3n_A          275 IGYLNLDRYWA--DNVAMLGDAIHNVHPITGQGMNLAIEDASALADALDLALRDACALEDALAGYQAERFPVNQAIVSYG  352 (399)
T ss_dssp             CCCEECSCSEE--TTEEECGGGTEECCGGGCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhccccccccc--CcEEEEechhccCCCcccccHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHhccHHHHHHHHH
Confidence            44 45556654  9999999999999999999999999999999999998775 33457899999999999999999999


Q ss_pred             HHHHHHHhc
Q 012845          425 VQNFRAAME  433 (455)
Q Consensus       425 ~~~~~~~~~  433 (455)
                      +.+.+.++.
T Consensus       353 ~~~~~~~~~  361 (399)
T 2x3n_A          353 HALATSLED  361 (399)
T ss_dssp             HHHHHHTTC
T ss_pred             HHhhhhhcc
Confidence            888776553

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=100.00  E-value=4.1e-36  Score=299.65  Aligned_cols=343  Identities=17%  Similarity=0.229  Sum_probs=221.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC--CCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF--STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~--~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      ++||+||||||+|+++|+.|++.|++|+||||.+.+  ....++..+.+++++.|+++ |+++.+...+.+...   ..+
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~l-g~~~~~~~~~~~~~~---~~~   77 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREA-GVDRRMARDGLVHEG---VEI   77 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHT-TCCHHHHHHCEEESC---EEE
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHc-CCcHHHHhcCCccce---EEE
Confidence            579999999999999999999999999999998753  23345557999999999999 999988775544322   111


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                      ...  +... ..+      +...........+.+..+.+.|.+.+.+.|+                   +|+++++|+++
T Consensus        78 ~~~--~~~~-~~~------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~-------------------~i~~~~~v~~i  129 (394)
T 1k0i_A           78 AFA--GQRR-RID------LKRLSGGKTVTVYGQTEVTRDLMEAREACGA-------------------TTVYQAAEVRL  129 (394)
T ss_dssp             EET--TEEE-EEC------HHHHHTSCCEEECCHHHHHHHHHHHHHHTTC-------------------EEESSCEEEEE
T ss_pred             EEC--CceE-Eec------cccccCCCceEEechHHHHHHHHHHHHhcCC-------------------eEEeceeEEEE
Confidence            111  1110 000      0000001224567888999999999988776                   99999999999


Q ss_pred             eecC-CceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeE---EEEEecCCcccccccCCCc
Q 012845          201 SATD-QCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLV---SVHFLSKDLGDYLLNERPG  276 (455)
Q Consensus       201 ~~~~-~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  276 (455)
                      +.++ +.+.|++.  ++|+  ..++++|+||+|||.+|.+|++++.....  .+...+   ....... ..    ...+.
T Consensus       130 ~~~~~~~~~v~~~--~~g~--~~~~~a~~vV~AdG~~S~vr~~l~~~~~~--~~~~~~~~~~~~~~~~-~~----~~~~~  198 (394)
T 1k0i_A          130 HDLQGERPYVTFE--RDGE--RLRLDCDYIAGCDGFHGISRQSIPAERLK--VFERVYPFGWLGLLAD-TP----PVSHE  198 (394)
T ss_dssp             ECTTSSSCEEEEE--ETTE--EEEEECSEEEECCCTTCSTGGGSCGGGCE--EEEEEEEEEEEEEEES-SC----CSCSS
T ss_pred             EEecCCceEEEEe--cCCc--EEEEEeCEEEECCCCCcHHHHhcCccccc--cccccccceeEEEecC-CC----CCccc
Confidence            8763 55777762  1553  23689999999999999999999754211  111111   1111111 10    11122


Q ss_pred             eEEEEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCC----CCCCeeEEEeeceEeceeeec
Q 012845          277 MLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGW----ELSDIDVIDIKPWVMHAEVAE  352 (455)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~  352 (455)
                      ..+ ...++++.++....  .+...+.+.... ......++.+...+.+.+.+..    ............+++.....+
T Consensus       199 ~~~-~~~~~g~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (394)
T 1k0i_A          199 LIY-ANHPRGFALCSQRS--ATRSQYYVQVPL-SEKVEDWSDERFWTELKARLPSEVAEKLVTGPSLEKSIAPLRSFVVE  274 (394)
T ss_dssp             CEE-ECCTTCCEEEEEEE--TTEEEEEEEECT-TCCGGGCCHHHHHHHHHHTSCHHHHHHCCCCCEEEEEEEEEEEEEEE
T ss_pred             eEE-EEcCCceEEEEecC--CCcEEEEEEeCC-CCCccccCHHHHHHHHHHhhCcccccccccCcceeeEEEEhhhhhcc
Confidence            222 22344444433322  233333332222 2233455665555555544322    111112222233444444455


Q ss_pred             ccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHh
Q 012845          353 KFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAM  432 (455)
Q Consensus       353 ~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~  432 (455)
                      ++..  +||+|||||||.|+|++|||+|+||+||..|+++|.+..++ +...+|+.|++.|++++..+++.|+.....++
T Consensus       275 ~~~~--grv~LvGDAAh~~~P~~GqG~~~ai~da~~La~~L~~~~~~-~~~~~L~~Y~~~r~~~~~~~~~~s~~~~~~~~  351 (394)
T 1k0i_A          275 PMQH--GRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYRE-GRGELLERYSAICLRRIWKAERFSWWMTSVLH  351 (394)
T ss_dssp             CSEE--TTEEECGGGTEECCGGGTCHHHHHHHHHHHHHHHHHHHHHH-CCGGGGGGHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cccc--CCEEEEechhhcCCCcccchHHHHHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6654  99999999999999999999999999999999999887643 34789999999999999999999988766655


Q ss_pred             ccc
Q 012845          433 EVP  435 (455)
Q Consensus       433 ~~~  435 (455)
                      .++
T Consensus       352 ~~~  354 (394)
T 1k0i_A          352 RFP  354 (394)
T ss_dssp             CCT
T ss_pred             cCC
Confidence            443

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=100.00  E-value=4.2e-36  Score=298.84  Aligned_cols=337  Identities=12%  Similarity=0.082  Sum_probs=201.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-CCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS-THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~-~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~  119 (455)
                      |.+|||+|||||||||++|+.|+++|++|+||||++.+. +..+|..|+++.   ++.+ ++.........   .+....
T Consensus         2 Me~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~---l~~l-~~~~~~~~~~~---~~~~~~   74 (397)
T 3oz2_A            2 METYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGI---LNEA-DIKADRSFIAN---EVKGAR   74 (397)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHH---HHHT-TCCCCTTTEEE---EESEEE
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHH---HHHc-CCCchhhhhhc---ccceEE
Confidence            457999999999999999999999999999999988764 345677887754   4444 44321111000   011111


Q ss_pred             EeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEE
Q 012845          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (455)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~  199 (455)
                      +. ...+.........       .......+.++|..+.+.|.+.+.+.|+                   +++++++|++
T Consensus        75 ~~-~~~~~~~~~~~~~-------~~~~~~~~~i~R~~~~~~L~~~a~~~G~-------------------~~~~~~~v~~  127 (397)
T 3oz2_A           75 IY-GPSEKRPIILQSE-------KAGNEVGYVLERDKFDKHLAALAAKAGA-------------------DVWVKSPALG  127 (397)
T ss_dssp             EE-CTTCSSCEEEECS-------SSSCCCEEEECHHHHHHHHHHHHHHHTC-------------------EEESSCCEEE
T ss_pred             EE-eCCCceEeecccc-------ccCCceeEEEEHHHHHHHHHHHHHhcCc-------------------EEeeeeeeee
Confidence            11 1111111110000       0112234678999999999999999987                   9999999999


Q ss_pred             eeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEE
Q 012845          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF  279 (455)
Q Consensus       200 i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (455)
                      +..+++.+...... .++  ...++++|+||+|||.+|.+|++++................+.....     ...+....
T Consensus       128 ~~~~~~~~~~v~~~-~~~--~~~~~~a~~vIgAdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  199 (397)
T 3oz2_A          128 VIKENGKVAGAKIR-HNN--EIVDVRAKMVIAADGFESEFGRWAGLKSVILARNDIISALQYRMINV-----DVDPDYTD  199 (397)
T ss_dssp             EEEETTEEEEEEEE-ETT--EEEEEEEEEEEECCCTTCHHHHHHTCGGGCCCGGGEEEEEEEEEESC-----CCCTTEEE
T ss_pred             eeeccceeeeeeec-ccc--cceEEEEeEEEeCCccccHHHHHcCCCcccccceeeeeeEEEEeecc-----ccCcccce
Confidence            98887776543331 122  23478999999999999999999987654444333333332221111     11222222


Q ss_pred             EEEc---cCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCC--CeeEEEeeceEec-eeeecc
Q 012845          280 FIFN---TEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELS--DIDVIDIKPWVMH-AEVAEK  353 (455)
Q Consensus       280 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~  353 (455)
                      +.+.   +.++.++  .+...+...+.+....+..    .......+.+.++....+.  ...........++ ......
T Consensus       200 ~~~~~~~~~g~~~~--~~~~~~~~~vg~~~~~~~~----~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  273 (397)
T 3oz2_A          200 FYLGSIAPAGYIWV--FPKGEGMANVGIGSSINWI----HNRFELKNYLDRFIENHPGLKKGQDIQLVTGGVSVSKVKMP  273 (397)
T ss_dssp             EECSTTSTTEEEEE--EEEETTEEEEEEEEETTTS----CSHHHHHHHHHHHHHTCHHHHTSEEEEEEEEEEECCCCCSC
T ss_pred             eeeeccCCCceEEE--eecccceeEEEEeeccchh----hhhhhHHHHHHHHHHhCccccccceeeeeeccccccCcccc
Confidence            2221   2233333  3333444443332211111    1122333444433322111  1111111111121 122233


Q ss_pred             cccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHc-CCCCchhhhhHHHhhhHHHHHhHHhHHHH
Q 012845          354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-DIAPASILNTYETERKPIAEFNTALSVQN  427 (455)
Q Consensus       354 ~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~-~~~~~~al~~Y~~~r~~~~~~~~~~s~~~  427 (455)
                      +.  .+|++|+|||||.++|++|||+|+||+||..||++|.++++ ++...++|+.|++.++++..+........
T Consensus       274 ~~--~~~v~lvGDAA~~~~P~~G~Gi~~A~~~g~~~A~~i~~~l~~~~~~~~~L~~Ye~~~~~~~~~~~~~~~~~  346 (397)
T 3oz2_A          274 IT--MPGLMLVGDAARLIDPITGGGIANAIVSGMYAAQVTKEAIESNDYSPQMMQKYEKLIKERFERKHLRNWVA  346 (397)
T ss_dssp             CE--ETTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ee--eeeEEEcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33  38999999999999999999999999999999999999875 44567899999999988876555444333

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=100.00  E-value=7.3e-36  Score=299.45  Aligned_cols=349  Identities=19%  Similarity=0.202  Sum_probs=218.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~-V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~  119 (455)
                      +.++||+||||||+||++|+.|+++|++ |+||||.+.+...+++..+.+++++.|+.+ |+++.+...+.+...   ..
T Consensus         2 ~~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~l-g~~~~l~~~~~~~~~---~~   77 (410)
T 3c96_A            2 SEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAEL-GLGPALAATAIPTHE---LR   77 (410)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHT-TCHHHHHHHSEEECE---EE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHC-CChHHHHhhCCCcce---EE
Confidence            4568999999999999999999999999 999999988877888999999999999999 999998776544322   11


Q ss_pred             EeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHh-cccccccCCCcccccccccccceEEeccEEE
Q 012845          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILMGHECV  198 (455)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~  198 (455)
                      + .+..|..+...+......     .......++|..|.+.|.+.+.+ .|.                  ++|+++++|+
T Consensus        78 ~-~~~~g~~~~~~~~~~~~~-----~~~~~~~i~r~~l~~~L~~~~~~~~g~------------------~~v~~~~~v~  133 (410)
T 3c96_A           78 Y-IDQSGATVWSEPRGVEAG-----NAYPQYSIHRGELQMILLAAVRERLGQ------------------QAVRTGLGVE  133 (410)
T ss_dssp             E-ECTTSCEEEEEECGGGGT-----CSSCEEEEEHHHHHHHHHHHHHHHHCT------------------TSEEESEEEE
T ss_pred             E-EcCCCCEEeeccCCcccc-----CCCCeeeeeHHHHHHHHHHHHHhhCCC------------------cEEEECCEEE
Confidence            1 122333322111000000     01123568999999999999987 353                  3799999999


Q ss_pred             EeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceE
Q 012845          199 SVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML  278 (455)
Q Consensus       199 ~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (455)
                      +++. ++++.+++....+|+  ..++++|+||+|||.+|.+|++++.......+....+........      ...++..
T Consensus       134 ~i~~-~~~v~v~~~~~~~g~--~~~~~ad~vV~AdG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~  204 (410)
T 3c96_A          134 RIEE-RDGRVLIGARDGHGK--PQALGADVLVGADGIHSAVRAHLHPDQRPLSHGGITMWRGVTEFD------RFLDGKT  204 (410)
T ss_dssp             EEEE-ETTEEEEEEEETTSC--EEEEEESEEEECCCTTCHHHHHHCTTCCCCEEEEEEEEEEEEEES------CCTTSSE
T ss_pred             EEec-CCccEEEEecCCCCC--ceEEecCEEEECCCccchhHHHhcCCCCCCCcCCeeEEEeecccc------cccCCCe
Confidence            9998 777777766211242  237899999999999999999996543211111111111111110      0112222


Q ss_pred             EEEEcc--CceEEEEeecC-----CCCeEEEEeecCCC----CCCCCCCCH-HHHHHHHHHhhCCCCCCe---eE----E
Q 012845          279 FFIFNT--EAIGVLVAHDL-----KEGEFILQVPFYPP----QQNLEDFSP-EICEKLIFKLVGWELSDI---DV----I  339 (455)
Q Consensus       279 ~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~l~~~~~~~~~~~---~~----~  339 (455)
                      +..+..  .+..++++...     ....+.|.+.....    ......+.. ....+++..+..+.....   .+    .
T Consensus       205 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~  284 (410)
T 3c96_A          205 MIVANDEHWSRLVAYPISARHAAEGKSLVNWVCMVPSAAVGQLDNEADWNRDGRLEDVLPFFADWDLGWFDIRDLLTRNQ  284 (410)
T ss_dssp             EEEEECTTCCEEEEEECCHHHHTTTCEEEEEEEEEEHHHHCCCCSSCCTTCBCCHHHHHHHHTTCCBTTBCHHHHHHTCS
T ss_pred             EEEecCCCCcEEEEEecCCcccCCCCcEEEEEEEecCcccccCCCccccCCCCCHHHHHHHhcCCCCchhHHHHHHhcCc
Confidence            333332  33334433321     11233343322110    111122211 112222222222221100   00    0


Q ss_pred             EeeceEece-eeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHH
Q 012845          340 DIKPWVMHA-EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE  418 (455)
Q Consensus       340 ~~~~~~~~~-~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~  418 (455)
                      ....|++.. ...+.|..  +||+|||||||.|+|++|||+|+||+||..|+++|.+.   .+...+|+.|++.|++++.
T Consensus       285 ~~~~~~~~~~~~~~~~~~--grv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~---~~~~~~L~~Ye~~r~~~~~  359 (410)
T 3c96_A          285 LILQYPMVDRDPLPHWGR--GRITLLGDAAHLMYPMGANGASQAILDGIELAAALARN---ADVAAALREYEEARRPTAN  359 (410)
T ss_dssp             EEEEEEEEECCCCSCCCB--TTEEECTHHHHCCCSSTTCTHHHHHHHHHHHHHHHHHC---SSHHHHHHHHHHHHHHHHH
T ss_pred             ccceeecccCCCcccccc--CCEEEEecccCCCCCccchhHHHHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHH
Confidence            112334332 22345553  99999999999999999999999999999999999863   3457899999999999999


Q ss_pred             HhHHhHHHHHHHH
Q 012845          419 FNTALSVQNFRAA  431 (455)
Q Consensus       419 ~~~~~s~~~~~~~  431 (455)
                      .++..|++.+..+
T Consensus       360 ~~~~~s~~~~~~~  372 (410)
T 3c96_A          360 KIILANREREKEE  372 (410)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHhh
Confidence            9999998665544

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=100.00  E-value=3e-35  Score=293.83  Aligned_cols=345  Identities=18%  Similarity=0.251  Sum_probs=213.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC--CcccccCh-hHHHHHHhhhchHHHHHhcCCCcccccc
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH--PQAHFINN-RYALVFRKLDGLAEEIERSQPPVDLWRK  117 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~--~~~~~l~~-~~~~~l~~~~gl~~~l~~~~~~~~~~~~  117 (455)
                      +.++||+||||||+|+++|+.|++.|++|+||||.+.+..+  +.++.+.+ .+.+.|+++ |+++.+.....+...   
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~~~~---   99 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKA-GLLQTYYDLALPMGV---   99 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHT-TCHHHHHHHCBCCCE---
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhc-ChHHHHHHhhcccce---
Confidence            45689999999999999999999999999999999776543  33444444 568999999 999998776554422   


Q ss_pred             eEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEE
Q 012845          118 FIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHEC  197 (455)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v  197 (455)
                        ...+..|..+..... ...      .......++|..|.+.|.+.+.+  +                   .|+++++|
T Consensus       100 --~~~~~~g~~~~~~~~-~~~------~~~~~~~i~r~~l~~~L~~~~~~--~-------------------~i~~~~~v  149 (398)
T 2xdo_A          100 --NIADEKGNILSTKNV-KPE------NRFDNPEINRNDLRAILLNSLEN--D-------------------TVIWDRKL  149 (398)
T ss_dssp             --EEECSSSEEEEECCC-GGG------TTSSCCEECHHHHHHHHHHTSCT--T-------------------SEEESCCE
T ss_pred             --EEECCCCCchhhccc-ccc------CCCCCceECHHHHHHHHHhhcCC--C-------------------EEEECCEE
Confidence              111223333221100 000      01112357899999999887643  2                   78999999


Q ss_pred             EEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecC-Cc--ccccccCC
Q 012845          198 VSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSK-DL--GDYLLNER  274 (455)
Q Consensus       198 ~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~  274 (455)
                      ++++.+++++.+++.   +|+    ++++|+||+|||.+|.+|++++...  ..+............ ..  .... ...
T Consensus       150 ~~i~~~~~~v~v~~~---~g~----~~~ad~vV~AdG~~S~vR~~l~~~~--~~~~g~~~~~~~~~~~~~~~~~~~-~~~  219 (398)
T 2xdo_A          150 VMLEPGKKKWTLTFE---NKP----SETADLVILANGGMSKVRKFVTDTE--VEETGTFNIQADIHQPEINCPGFF-QLC  219 (398)
T ss_dssp             EEEEECSSSEEEEET---TSC----CEEESEEEECSCTTCSCCTTTCCCC--CEEEEEEEEEEEESSHHHHSHHHH-HHH
T ss_pred             EEEEECCCEEEEEEC---CCc----EEecCEEEECCCcchhHHhhccCCC--ceEcceEEEEEEeCchhccCchhH-hhc
Confidence            999988887777765   664    6799999999999999999986321  111111111111111 00  0000 001


Q ss_pred             CceEEEEEccCceEEEEeecCCCCeEEEEeecCCCCCCC-----CCCCHHHHHHHHHHhhC-CCCCCeeEE----Eeece
Q 012845          275 PGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNL-----EDFSPEICEKLIFKLVG-WELSDIDVI----DIKPW  344 (455)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~-~~~~~~~~~----~~~~~  344 (455)
                      +....+.+.++....+  .+...+.+.+.+....+....     ...+.+...+.+.+.+. |.....+++    ....+
T Consensus       220 ~~g~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  297 (398)
T 2xdo_A          220 NGNRLMASHQGNLLFA--NPNNNGALHFGISFKTPDEWKNQTQVDFQNRNSVVDFLLKEFSDWDERYKELIHTTLSFVGL  297 (398)
T ss_dssp             TTSEEEEEETTEEEEE--EEEETTEEEEEEEEECCTTC---CCSCTTCHHHHHHHHHHHTTTSCHHHHHHHHHCSCCEEE
T ss_pred             CCceEEEecCCCeEEE--EeCCCCcEEEEEEEecCcccccccccCcCCHHHHHHHHHHHHcCCChHHHHHHhCcccceee
Confidence            1222333444433332  343445554444332222111     11244444444444332 211000000    01112


Q ss_pred             Eece-eeecccccCCC--cEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCC-CchhhhhHHHhhhHHHHHh
Q 012845          345 VMHA-EVAEKFLCCYN--QIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIA-PASILNTYETERKPIAEFN  420 (455)
Q Consensus       345 ~~~~-~~~~~~~~~~~--~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~-~~~al~~Y~~~r~~~~~~~  420 (455)
                      ++.. .....|.. .+  ||+|||||||.|+|++|||+|+||+||..|+++|.+.  ..+ ...+|+.|+++|++++..+
T Consensus       298 ~~~~~~~~~~~~~-~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~--~~~~~~~~L~~Y~~~r~~~~~~~  374 (398)
T 2xdo_A          298 ATRIFPLEKPWKS-KRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADG--KFNSIEEAVKNYEQQMFIYGKEA  374 (398)
T ss_dssp             EEEECCCCSCCCS-CCSSCEEECTHHHHCCCCTTSCSHHHHHHHHHHHHHHHHSC--CSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             eeEeccCCCCccc-CCCccEEEEeehhccCCCccCccHHHHHHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHHHHHHH
Confidence            2221 12224432 24  8999999999999999999999999999999999863  223 4689999999999999999


Q ss_pred             HHhHHHHHHHHhcc
Q 012845          421 TALSVQNFRAAMEV  434 (455)
Q Consensus       421 ~~~s~~~~~~~~~~  434 (455)
                      +..|+..+..++..
T Consensus       375 ~~~s~~~~~~~~~~  388 (398)
T 2xdo_A          375 QEESTQNEIEMFKP  388 (398)
T ss_dssp             HHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHhCC
Confidence            99999998877654

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=100.00  E-value=1.8e-33  Score=279.19  Aligned_cols=324  Identities=15%  Similarity=0.167  Sum_probs=211.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEe
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~  121 (455)
                      ..+||+||||||+|+++|+.|+++|++|+||||.+.+...+++..+++++++.|+++ |+++.+...+.+...   ..+.
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~-g~~~~~~~~~~~~~~---~~~~   85 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGL-GALDDVLQGSHTPPT---YETW   85 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHT-TCHHHHHTTCBCCSC---EEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHc-CCHHHHHhhCCCccc---eEEE
Confidence            468999999999999999999999999999999988877788999999999999999 999998876655432   2222


Q ss_pred             ecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEee
Q 012845          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (455)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~  201 (455)
                      ..  |..+...+..          ......++|..|.+.|.+.+.+.|+                   +|+++++|++++
T Consensus        86 ~~--g~~~~~~~~~----------~~~~~~~~r~~l~~~L~~~~~~~gv-------------------~i~~~~~v~~i~  134 (379)
T 3alj_A           86 MH--NKSVSKETFN----------GLPWRIMTRSHLHDALVNRARALGV-------------------DISVNSEAVAAD  134 (379)
T ss_dssp             ET--TEEEEEECGG----------GCCEEEEEHHHHHHHHHHHHHHTTC-------------------EEESSCCEEEEE
T ss_pred             eC--CceeeeccCC----------CCceEEECHHHHHHHHHHHHHhcCC-------------------EEEeCCEEEEEE
Confidence            21  3332221110          1124678999999999999999886                   999999999998


Q ss_pred             ecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEE-
Q 012845          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF-  280 (455)
Q Consensus       202 ~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  280 (455)
                      .  ++ .|++.   +|+    ++++|+||+|||.+|.+|++++..... .+................. ....+..... 
T Consensus       135 ~--~~-~v~~~---~g~----~~~ad~vV~AdG~~s~vr~~l~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  202 (379)
T 3alj_A          135 P--VG-RLTLQ---TGE----VLEADLIVGADGVGSKVRDSIGFKQDR-WVSKDGLIRLIVPRMKKEL-GHGEWDNTIDM  202 (379)
T ss_dssp             T--TT-EEEET---TSC----EEECSEEEECCCTTCHHHHHHCCCEEE-EEEEEEEEEEEEECCHHHH-CSSCTTSEEEE
T ss_pred             e--CC-EEEEC---CCC----EEEcCEEEECCCccHHHHHHhcCCCCc-CcCCcEEEEEEechhhccC-CcCCccccccc
Confidence            7  33 56654   564    789999999999999999999753211 1111111111111110000 0011111111 


Q ss_pred             --EEccCceEEEEeecCCCCeEEEEeecCCCC---CCCCCCCHHH---HH---HHHHHhhCCCCCCeeEEEeeceEece-
Q 012845          281 --IFNTEAIGVLVAHDLKEGEFILQVPFYPPQ---QNLEDFSPEI---CE---KLIFKLVGWELSDIDVIDIKPWVMHA-  348 (455)
Q Consensus       281 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~---~~l~~~~~~~~~~~~~~~~~~~~~~~-  348 (455)
                        .+.+++..+  .+|...+...|.+......   +.+...-.+.   +.   +.+.......        ...|++.. 
T Consensus       203 ~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~  272 (379)
T 3alj_A          203 WNFWPRVQRIL--YSPCNENELYLGLMAPAADPRGSSVPIDLEVWVEMFPFLEPCLIEAAKLK--------TARYDKYET  272 (379)
T ss_dssp             ECCSSSCCEEE--EEECSSSEEEEEEEECTTCTTTTCSSCCHHHHHHHCGGGHHHHHHHHTCT--------TCCEEEEEE
T ss_pred             ceEECCCCEEE--EEECCCCcEEEEEEecCCCCCHHHHHHHHhcCCchhccHHHHHhhCCccc--------eEEeccccc
Confidence              234444444  3455555555444332211   1111111110   00   1222111111        11233332 


Q ss_pred             eeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHH
Q 012845          349 EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQN  427 (455)
Q Consensus       349 ~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~  427 (455)
                      ...+.|..  +||+|||||||.++|++|||+|+||+||..|+++|.+   ..+...+|+.|++.|++++..++..+.+.
T Consensus       273 ~~~~~~~~--~rv~lvGDAAh~~~P~~GqG~~~ai~da~~La~~L~~---~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~  346 (379)
T 3alj_A          273 TKLDSWTR--GKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEE---GSSVEDALVAWETRIRPITDRCQALSGDY  346 (379)
T ss_dssp             EEESCSEE--TTEEECTHHHHCCCGGGSCHHHHHHHHHHHHHHHTTS---SSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCccc--CcEEEEEcccCCCCcchhhhHHHHHHHHHHHHHHhcc---ccCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            23455553  8999999999999999999999999999999999964   22446899999999999999999999543

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=100.00  E-value=3.3e-32  Score=280.41  Aligned_cols=353  Identities=14%  Similarity=0.123  Sum_probs=218.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHH-HHHhhhchHHHHHhcCCCcccccceE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYAL-VFRKLDGLAEEIERSQPPVDLWRKFI  119 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~-~l~~~~gl~~~l~~~~~~~~~~~~~~  119 (455)
                      +.++||+||||||+|+++|+.|+++|++|+||||.+.+.. ..+..+.+.... +++.+ |+++.+.....+......+.
T Consensus         5 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~-~~g~~~~~~~~~~~l~~l-gl~~~~~~~~~~~~~~~~~~   82 (512)
T 3e1t_A            5 PEVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRH-QIGESLLPATVHGICAML-GLTDEMKRAGFPIKRGGTFR   82 (512)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCC-CSCCBCCHHHHTTHHHHT-TCHHHHHTTTCCEECEEEEE
T ss_pred             CccCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCC-CCCcccCcchHHHHHHHh-CcHHHHHHcCCccccCceEE
Confidence            4579999999999999999999999999999999975543 345666676554 88888 99998877665543221111


Q ss_pred             EeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEE
Q 012845          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (455)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~  199 (455)
                        .......+. .......    .......++++|..|.+.|.+.+.+.|+                   +|+++++|++
T Consensus        83 --~~~~~~~~~-~~~~~~~----~~~~~~~~~v~r~~l~~~L~~~a~~~Gv-------------------~i~~~~~V~~  136 (512)
T 3e1t_A           83 --WGKEPEPWT-FGFTRHP----DDPYGFAYQVERARFDDMLLRNSERKGV-------------------DVRERHEVID  136 (512)
T ss_dssp             --CSSCSSCEE-EESSSSS----SSTTCCEEBCCHHHHHHHHHHHHHHTTC-------------------EEESSCEEEE
T ss_pred             --ecCCccccc-cccccCC----CCCcceeeEecHHHHHHHHHHHHHhCCC-------------------EEEcCCEEEE
Confidence              111111000 0000000    0112235678999999999999999886                   9999999999


Q ss_pred             eeecCCceE-EEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceE
Q 012845          200 VSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML  278 (455)
Q Consensus       200 i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (455)
                      +..+++.+. |.+.. .+|+  ..++++|+||+|||.+|.+|++++.......+ .......+...... .. .......
T Consensus       137 v~~~~~~v~gv~~~~-~dG~--~~~i~ad~VI~AdG~~S~vr~~lg~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~  210 (512)
T 3e1t_A          137 VLFEGERAVGVRYRN-TEGV--ELMAHARFIVDASGNRTRVSQAVGERVYSRFF-QNVALYGYFENGKR-LP-APRQGNI  210 (512)
T ss_dssp             EEEETTEEEEEEEEC-SSSC--EEEEEEEEEEECCCTTCSSGGGTCCEEECSTT-CEEEEEEEEESCCC-CS-TTCTTSE
T ss_pred             EEEECCEEEEEEEEe-CCCC--EEEEEcCEEEECCCcchHHHHHcCCCccCchh-cceEEEEEecCCcc-CC-CCCcCce
Confidence            998877654 55541 1332  34789999999999999999999754332222 22222222221110 01 1112223


Q ss_pred             EEEEccCceEEEEeecCCCCeEEEEeecCCCC-CCCCCCCHHHHHHHHHH------hhCCCCCCeeEEEeeceEece---
Q 012845          279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFK------LVGWELSDIDVIDIKPWVMHA---  348 (455)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~---  348 (455)
                      +..+.+.++.+  .+|...+...+.+...... ........+.+..++..      .+..... .........++..   
T Consensus       211 ~~~~~~~G~~~--~~Pl~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~l~~~~~-~~~~~~~~i~~~~~~~  287 (512)
T 3e1t_A          211 LSAAFQDGWFW--YIPLSDTLTSVGAVVSREAAEAIKDGHEAALLRYIDRCPIIKEYLAPATR-VTTGDYGEIRIRKDYS  287 (512)
T ss_dssp             EEEEETTEEEE--EEECSSSEEEEEEEEEHHHHTTTSSCHHHHHHHHHHTSHHHHHHHTTCEE-CCSSTTSSCEEEESCC
T ss_pred             EEEEeCCceEE--EEEeCCCeEEEEEEecHHHhhhhcCCHHHHHHHHHHhCchHHHHHhcCcc-ccccccccceeecccc
Confidence            33444444444  4455555444433221111 11112223333333321      1111100 0000000111111   


Q ss_pred             eeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCC-CCchhhhhHHHhhhHHHHHhHHhHHHH
Q 012845          349 EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI-APASILNTYETERKPIAEFNTALSVQN  427 (455)
Q Consensus       349 ~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~-~~~~al~~Y~~~r~~~~~~~~~~s~~~  427 (455)
                      .....+.  .+||+|||||||+++|++|||+|+|++||..|+++|...+.+. +...+|+.|++.|+++...+.++...+
T Consensus       288 ~~~~~~~--~~~vvlvGDAAh~~~P~~GqG~~~Al~dA~~La~~L~~~l~~~~~~~~aL~~Ye~~~~~~~~~~~~~~~~~  365 (512)
T 3e1t_A          288 YCNTSFW--KNGMALVGDAACFVDPVFSSGVHLATYSALLVARAINTCLAGEMSEQRCFEEFERRYRREYGNFYQFLVAF  365 (512)
T ss_dssp             EEESCSB--CSSEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccc--cCCEEEEechhhcCCCccccCHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1233443  4899999999999999999999999999999999999876543 345789999999999999999999988


Q ss_pred             HHHHh
Q 012845          428 FRAAM  432 (455)
Q Consensus       428 ~~~~~  432 (455)
                      |....
T Consensus       366 y~~~~  370 (512)
T 3e1t_A          366 YDMNQ  370 (512)
T ss_dssp             HHHCC
T ss_pred             Hhhhc
Confidence            88654

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=100.00  E-value=3.3e-32  Score=273.62  Aligned_cols=350  Identities=13%  Similarity=0.115  Sum_probs=220.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      +.++||+||||||+|+++|+.|+++|++|+||||.+.+. ...|..+.+.+...++.+ |+++.+...+.+.....  .+
T Consensus         3 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~-~~~g~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~--~~   78 (421)
T 3nix_A            3 REKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPR-FVIGESLLPRCMEHLDEA-GFLDAVKAQGFQQKFGA--KF   78 (421)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSC-CCSCCBCCGGGHHHHHHT-TCHHHHHHTTCEEECEE--EE
T ss_pred             CccCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCC-CcccCcccHhHHHHHHHc-CChHHHHHcCCcccCCc--EE
Confidence            356899999999999999999999999999999997654 367888999999999999 99998887654332111  11


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                      ..   +......+......    .......+++|..|.+.|.+.+.+.|+                   +++++++|+++
T Consensus        79 ~~---~~~~~~~~~~~~~~----~~~~~~~~~~r~~~~~~L~~~a~~~gv-------------------~i~~~~~v~~i  132 (421)
T 3nix_A           79 VR---GKEIADFNFSDQFS----NGWNWTWQVPRGNFDKTLADEAARQGV-------------------DVEYEVGVTDI  132 (421)
T ss_dssp             EE---TTEEEEEETTSCSS----CSCCCEEECCHHHHHHHHHHHHHHHTC-------------------EEECSEEEEEE
T ss_pred             Ee---CCeeEEEeehhhcC----CCCCceeEECHHHHHHHHHHHHHhCCC-------------------EEEcCCEEEEE
Confidence            11   11111111110000    012235678999999999999999887                   99999999999


Q ss_pred             eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEE
Q 012845          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF  280 (455)
Q Consensus       201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (455)
                      +.+++++.+.+.. .+|+  ..++++|+||+|||.+|.+|+.++............+.............  ......+.
T Consensus       133 ~~~~~~~~v~v~~-~~g~--~~~~~a~~vV~A~G~~s~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  207 (421)
T 3nix_A          133 KFFGTDSVTTIED-INGN--KREIEARFIIDASGYGRVIPRMFGLDKPSGFESRRTLFTHIKDVKRPVAA--EMEGNRIT  207 (421)
T ss_dssp             EEETTEEEEEEEE-TTSC--EEEEEEEEEEECCGGGCHHHHHTTCEECCSSCCCEEEEEEEECTTCCC------CCSEEE
T ss_pred             EEeCCEEEEEEEc-CCCC--EEEEEcCEEEECCCCchhhHHhcCCCCCCcCCCcEEEEEEECCCcCCCcc--CCCCeEEE
Confidence            9887776665552 2342  34689999999999999999999876655444444444433322211110  11222233


Q ss_pred             EEccCceEEEEeecCCCCeEEEEeecCCCCC-CCCCCCHHHHHHHHHHhhCCCC---CCeeE-EEeeceEeceeeecccc
Q 012845          281 IFNTEAIGVLVAHDLKEGEFILQVPFYPPQQ-NLEDFSPEICEKLIFKLVGWEL---SDIDV-IDIKPWVMHAEVAEKFL  355 (455)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~  355 (455)
                      .......++++..|..++...+.+....... .......+.+.+++... +...   ..... .....++........+.
T Consensus       208 ~~~~~~~g~~~~~P~~~~~~~vg~~~~~~~~~~~~~~~~~~l~~~~~~~-p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  286 (421)
T 3nix_A          208 AVVHKPKVWIWVIPFSNGNTSVGFVGEPSYFDEYTGTPEERMRAMIANE-GHIAERFKSEEFLFEPRTIEGYAISASKLY  286 (421)
T ss_dssp             EEEEETTEEEEEEECTTSEEEEEEEECHHHHTTSCSCHHHHHHHHHHTC-TTTHHHHTTCCBSSCCEEEECCCBEESCSE
T ss_pred             EEeCCCCEEEEEEEECCCCEEEEEEecHHHhhhcCCCHHHHHHHHHHhC-cHHHHHHhcCccccCceeecccceeeeeec
Confidence            3222233455555666666555543322111 11111223333333221 1100   00000 01112222223334444


Q ss_pred             cCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHH
Q 012845          356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR  429 (455)
Q Consensus       356 ~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~  429 (455)
                        .+++++||||||+++|++|+|+++|++||..|+++|.+.+++. ..+.++.|++.++........+....|.
T Consensus       287 --~~~v~lvGDAa~~~~P~~G~G~~~A~~~a~~la~~l~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~~  357 (421)
T 3nix_A          287 --GDGFVLTGNATEFLDPIFSSGATFAMESGSKGGKLAVQFLKGE-EVNWEKDFVEHMMQGIDTFRSFVTGWYD  357 (421)
T ss_dssp             --ETTEEECGGGTCBCCSTTCCHHHHHHHHHHHHHHHHHHHHTTC-CCCHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred             --cCCEEEecccccccCCcccccHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence              3899999999999999999999999999999999999987654 3457889999988876666555444443

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=100.00  E-value=3.2e-32  Score=276.42  Aligned_cols=339  Identities=15%  Similarity=0.056  Sum_probs=205.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC--CCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccce
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS--THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKF  118 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~--~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~  118 (455)
                      ++++||+||||||+|+++|+.|+++|++|+||||.+.+.  ...++..+   +...++.+ |+.+.+...  ....+...
T Consensus         4 ~~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l---~~~~l~~l-g~~~~~~~~--~~~~~~~~   77 (453)
T 3atr_A            4 ELKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAV---SKAHFDKL-GMPYPKGEE--LENKINGI   77 (453)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEE---EHHHHHHT-TCCCCCGGG--EEEEEEEE
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccc---cHHHHHHh-cCCCCchHH--HHhhhcce
Confidence            457999999999999999999999999999999987642  33455555   34566666 654311100  00001111


Q ss_pred             EEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEE
Q 012845          119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV  198 (455)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~  198 (455)
                      .+. ...+..        ...+     +.....++|..|.+.|.+.+.+.|+                   +++++++|+
T Consensus        78 ~~~-~~~~~~--------~~~~-----~~~~~~i~r~~l~~~L~~~a~~~gv-------------------~i~~~~~v~  124 (453)
T 3atr_A           78 KLY-SPDMQT--------VWTV-----NGEGFELNAPLYNQRVLKEAQDRGV-------------------EIWDLTTAM  124 (453)
T ss_dssp             EEE-CTTSSC--------EEEE-----EEEEEEECHHHHHHHHHHHHHHTTC-------------------EEESSEEEE
T ss_pred             EEE-CCCCce--------EEeE-----CCCcEEEcHHHHHHHHHHHHHHcCC-------------------EEEeCcEEE
Confidence            111 111100        0000     1124568999999999999999886                   999999999


Q ss_pred             EeeecCCceE-EEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCcc--CCcc---cceeEEEEEecCCccccccc
Q 012845          199 SVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLV--GEKD---LQKLVSVHFLSKDLGDYLLN  272 (455)
Q Consensus       199 ~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~  272 (455)
                      ++..+++.+. |++....+|  ...++++|+||+|||.+|.+|+.++....  ....   ....+.........     .
T Consensus       125 ~i~~~~~~v~gv~~~~~~~G--~~~~~~ad~VV~AdG~~s~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  197 (453)
T 3atr_A          125 KPIFEDGYVKGAVLFNRRTN--EELTVYSKVVVEATGYSRSFRSKLPPELPITEDLDDKDADVAYREVLLTKED-----I  197 (453)
T ss_dssp             EEEEETTEEEEEEEEETTTT--EEEEEECSEEEECCGGGCTTGGGSCTTSGGGCCCCGGGEEEEEEEEEEESSC-----C
T ss_pred             EEEEECCEEEEEEEEEcCCC--ceEEEEcCEEEECcCCchhhHHhcCCCCCcccCCCcccceeeeEEEEecCCC-----c
Confidence            9998777654 555421123  23478999999999999999999976431  1111   11111111111111     0


Q ss_pred             CCCceEEEEEc----cCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEec-
Q 012845          273 ERPGMLFFIFN----TEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMH-  347 (455)
Q Consensus       273 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-  347 (455)
                      ..+......+.    ++++.++++.  ..+.+.+.+.........  -..+.+.+.+.+..+. ....++.....+.++ 
T Consensus       198 ~~~~~~~~~~~~~~~~~g~~~~~P~--~~~~~~vg~~~~~~~~~~--~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~  272 (453)
T 3atr_A          198 EDHDYLRIFIDQETSPGGYWWYFPK--GKNKVNVGLGIQGGMGYP--SIHEYYKKYLDKYAPD-VDKSKLLVKGGALVPT  272 (453)
T ss_dssp             TTTTEEEEECCTTTSTTSCEEEEEE--ETTEEEEEEEEESSSCCC--CHHHHHHHHHHHHCTT-EEEEEEEEEEEEEEEC
T ss_pred             cCCCeEEEEECCCCCCCcEEEEEEC--CCCeEEEEEEecCCCCCC--CHHHHHHHHHHhhhhh-cCCCeEEeccceeccC
Confidence            12233222222    4455555444  334444443322211111  1234555555543221 111223222222222 


Q ss_pred             eeeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHc-CCCCchhhhhHHHhhhHHHHHhHHhHHH
Q 012845          348 AEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-DIAPASILNTYETERKPIAEFNTALSVQ  426 (455)
Q Consensus       348 ~~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~-~~~~~~al~~Y~~~r~~~~~~~~~~s~~  426 (455)
                      ....+.+..  +|++|||||||.++|++|||+++|++||..|+++|.+.++ ++...++|+.|++.|+++....+..+..
T Consensus       273 ~~~~~~~~~--~~v~lvGDAAh~~~P~~G~G~~~Ai~da~~la~~l~~~l~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~  350 (453)
T 3atr_A          273 RRPLYTMAW--NGIIVIGDSGFTVNPVHGGGKGSAMISGYCAAKAILSAFETGDFSASGLWDMNICYVNEYGAKQASLDI  350 (453)
T ss_dssp             SSCCSCSEE--TTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHHHHTCCSTTTTTHHHHHHHHHTHHHHHHHHH
T ss_pred             CCCCCceec--CCEEEEeCcccCCCCCccccHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            223344543  8999999999999999999999999999999999998765 3334689999999999999888887765


Q ss_pred             HHHHHh
Q 012845          427 NFRAAM  432 (455)
Q Consensus       427 ~~~~~~  432 (455)
                      ..+.+.
T Consensus       351 ~~~~~~  356 (453)
T 3atr_A          351 FRRFLQ  356 (453)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            554443

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=100.00  E-value=2.1e-32  Score=284.62  Aligned_cols=350  Identities=15%  Similarity=0.160  Sum_probs=217.4

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceE
Q 012845           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (455)
Q Consensus        40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~  119 (455)
                      ||+++||+||||||+|+++|+.|+++|++|+|||+.+.+.. ..+..+.+.+...++.+ |+++.+............+.
T Consensus        20 ~M~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~-~~G~~l~p~~~~~l~~l-Gl~~~l~~~~~~~~~~~~~~   97 (591)
T 3i3l_A           20 HMTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRY-RVGESLLPGTMSILNRL-GLQEKIDAQNYVKKPSATFL   97 (591)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCC-CCCCBCCHHHHHHHHHT-TCHHHHHHHCCEEECEEEEE
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCC-ceeeeECHHHHHHHHHc-CCcHHHHhcCCcccCCcEEE
Confidence            35579999999999999999999999999999999876543 45788999999999999 99998877544321111111


Q ss_pred             EeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEE
Q 012845          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (455)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~  199 (455)
                        ........ ........ ... .......+++|..|.+.|.+.+.+.|+                   +++++++|++
T Consensus        98 --~~~~~~~~-~~~~~~~~-~~~-~~~~~~~~v~r~~l~~~L~~~a~~~Gv-------------------~i~~g~~V~~  153 (591)
T 3i3l_A           98 --WGQDQAPW-TFSFAAPK-VAP-WVFDHAVQVKREEFDKLLLDEARSRGI-------------------TVHEETPVTD  153 (591)
T ss_dssp             --CSSSCCCE-EEECCCC---CT-TCCSCEEECCHHHHHHHHHHHHHHTTC-------------------EEETTCCEEE
T ss_pred             --ecCCCccc-eeeccccc-ccc-cccCeeEEEcHHHHHHHHHHHHHhCCC-------------------EEEeCCEEEE
Confidence              11111100 00000000 000 012235678999999999999999887                   9999999999


Q ss_pred             eeec-CCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceE
Q 012845          200 VSAT-DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML  278 (455)
Q Consensus       200 i~~~-~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (455)
                      +..+ ++.+.|++..  +|  ...++.+|+||+|||.+|.+|++++.......+....+...+.....   .........
T Consensus       154 v~~~~g~~~~V~~~~--~G--~~~~i~AdlVV~AdG~~S~lr~~lg~~~~~~~~~~~av~~~~~~~~~---~~~~~~~~~  226 (591)
T 3i3l_A          154 VDLSDPDRVVLTVRR--GG--ESVTVESDFVIDAGGSGGPISRKLGVRQYDEFYRNFAVWSYFKLKDP---FEGDLKGTT  226 (591)
T ss_dssp             EECCSTTCEEEEEEE--TT--EEEEEEESEEEECCGGGCHHHHHHTCEEEEEEEEEEEEEEEEECCCS---CCSTTTTCE
T ss_pred             EEEcCCCEEEEEEec--CC--ceEEEEcCEEEECCCCcchhHHHcCCCCCCccccceEEEEEEecCcc---ccCCCCCce
Confidence            9875 4455566651  33  22478999999999999999999976533211111111221221111   111222333


Q ss_pred             EEEEccCceEEEEeecCCCCeEEEEeecCCCCC-CCCCCCHHHHHHHHHHhhCCCCC------CeeE-EEeeceEeceee
Q 012845          279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQ-NLEDFSPEICEKLIFKLVGWELS------DIDV-IDIKPWVMHAEV  350 (455)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~------~~~~-~~~~~~~~~~~~  350 (455)
                      +..+.+.+..+.  +|...+.+.+.+....... .+...+.+   +++..+....+.      .... .....++.....
T Consensus       227 ~~~~~~~G~~w~--iPl~~~~~sv~~~~~~~~~~~l~~~~~~---~~~~~l~~~~p~l~~~l~~~~~~~~~~~~~~~~~~  301 (591)
T 3i3l_A          227 YSITFEDGWVWM--IPIKDDLYSVGLVVDRSKSAEVREQGAD---AFYSSTLAKCAKAMDILGGAEQVDEVRIVQDWSYD  301 (591)
T ss_dssp             EEEEETTEEEEE--EECSSSEEEEEEEEEGGGHHHHHHHCHH---HHHHHHHTTCHHHHHHHTTCEECSCCEEEEEEEEE
T ss_pred             EEEEcCCcEEEE--EECCCCeEEEEEEcCHHHHhhhccCCHH---HHHHHHHHhCHHHHHHHhcCccccCceEecccccc
Confidence            344445544444  4444555544432211110 00011112   122221111100      0000 001111112222


Q ss_pred             ecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCC-CchhhhhHHHhhhHHHHHhHHhHHHHHH
Q 012845          351 AEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIA-PASILNTYETERKPIAEFNTALSVQNFR  429 (455)
Q Consensus       351 ~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~-~~~al~~Y~~~r~~~~~~~~~~s~~~~~  429 (455)
                      ...+.  .+|+++||||||+++|+.|||+++|++||..|+++|.+.+.+.+ ...+++.|++.|+++...+.++...+|.
T Consensus       302 ~~~~~--~~rvvLIGDAAh~~~Pl~GqGinlAl~dA~~LA~~L~~~l~~~~~~~~al~~Y~~~~~~~~~~i~~~~~~~Y~  379 (591)
T 3i3l_A          302 TEVFS--ADRFFLCGDAACFTDPLFSQGVHLASQSAVSAAAAIDRITRHGDEKDAVHAWYNRTYREAYEQYHQFLASFYT  379 (591)
T ss_dssp             ESCSE--ETTEEECGGGTCBCCGGGCCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcc--cCCEEEEccccccCCCcccccHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444  38999999999999999999999999999999999998875433 3568999999999999999999999994

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=100.00  E-value=2.2e-33  Score=278.69  Aligned_cols=331  Identities=15%  Similarity=0.078  Sum_probs=201.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchH-HH-HHhcCCCcccccceE
Q 012845           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLA-EE-IERSQPPVDLWRKFI  119 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~-~~-l~~~~~~~~~~~~~~  119 (455)
                      .||+||||||+|+++|+.|+++  |++|+||||.+.+...+++..++++++..+... ++. +. +.....+   +....
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~   76 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANP-LSYLDAPERLNPQF---LEDFK   76 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCG-GGGSSCGGGGCCEE---ECCEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCc-chhhhhhHHHhhcc---ccceE
Confidence            3899999999999999999999  999999999988877788888887766522111 333 22 2221111   11111


Q ss_pred             EeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEE
Q 012845          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (455)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~  199 (455)
                      +..  .|..+..       ..     ......+.|..|.+.|.+.+.+.|+                   +++++++|++
T Consensus        77 ~~~--~g~~~~~-------~~-----~~~~~~~~r~~l~~~L~~~~~~~gv-------------------~i~~~~~v~~  123 (381)
T 3c4a_A           77 LVH--HNEPSLM-------ST-----GVLLCGVERRGLVHALRDKCRSQGI-------------------AIRFESPLLE  123 (381)
T ss_dssp             EEE--SSSEEEC-------CC-----CSCEEEEEHHHHHHHHHHHHHHTTC-------------------EEETTCCCCS
T ss_pred             EEe--CCeeEEe-------cC-----CCceeeecHHHHHHHHHHHHHHCCC-------------------EEEeCCEecc
Confidence            111  2222210       00     1123468999999999999999886                   8999999998


Q ss_pred             eeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccC-CcccceeEEEEEecCCcccccccCCCceE
Q 012845          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVG-EKDLQKLVSVHFLSKDLGDYLLNERPGML  278 (455)
Q Consensus       200 i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (455)
                      ++..        .          ++++|+||+|||.+|. |+++...... ................       ..+...
T Consensus       124 i~~~--------~----------~~~ad~vV~AdG~~S~-R~~l~~~~g~~~~~~~~~~~~~~~~~~-------~~~~~~  177 (381)
T 3c4a_A          124 HGEL--------P----------LADYDLVVLANGVNHK-TAHFTEALVPQVDYGRNKYIWYGTSQL-------FDQMNL  177 (381)
T ss_dssp             GGGC--------C----------GGGCSEEEECCGGGGG-TCCSSGGGCCCCEEEEEEEEEEEESSC-------CSSEEE
T ss_pred             chhc--------c----------cccCCEEEECCCCCch-HHhhhhhcCCCcccCCccEEEEecCCC-------CCccee
Confidence            8642        0          1369999999999999 9887321110 0000111111111110       011112


Q ss_pred             EEEEccCceEEEEeecCCCCeEEEEeecCCCC---CCCCCCCHHHHHHHHHHhhCCCCCCeeEEEee--ceEece-eeec
Q 012845          279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ---QNLEDFSPEICEKLIFKLVGWELSDIDVIDIK--PWVMHA-EVAE  352 (455)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~-~~~~  352 (455)
                      .+.+.+.+..++..++...+...+.+......   .....++.+...+.+.+.+.......+++...  .|+... ...+
T Consensus       178 ~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  257 (381)
T 3c4a_A          178 VFRTHGKDIFIAHAYKYSDTMSTFIVECSEETYARARLGEMSEEASAEYVAKVFQAELGGHGLVSQPGLGWRNFMTLSHD  257 (381)
T ss_dssp             EEEEETTEEEEEEEEECSSSCEEEEEEECHHHHHHTTSSSSCHHHHHHHHHHHTHHHHTTCCCBCCTTTCSEEEEECCCS
T ss_pred             eEeeCCCcEEEEEEEEecCCeEEEEEECCccccccCCcccCChHHHHHHHHHHhcccCCCchhhcCCCcceeeeccccCC
Confidence            22223333333334454444444333221110   12234455554444444332110011222111  344432 3345


Q ss_pred             ccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHh
Q 012845          353 KFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAM  432 (455)
Q Consensus       353 ~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~  432 (455)
                      .|..  +||+|||||||.|+|++|||+|+||+||..|+++|.+.   .+...+|+.|++.|++++..++..++.+..++.
T Consensus       258 ~~~~--grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~---~~~~~aL~~Y~~~r~~~~~~~~~~s~~~~~~~~  332 (381)
T 3c4a_A          258 RCHD--GKLVLLGDALQSGHFSIGHGTTMAVVVAQLLVKALCTE---DGVPAALKRFEERALPLVQLFRGHADNSRVWFE  332 (381)
T ss_dssp             CSEE--TTEEECGGGTCCCCGGGCCHHHHHHHHHHHHHHHHHHS---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Cccc--CCEEEEEccccccCCCccccHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            5654  99999999999999999999999999999999999863   345789999999999999999999999998888


Q ss_pred             ccccccCCCc
Q 012845          433 EVPSALGLDP  442 (455)
Q Consensus       433 ~~~~~~~~~~  442 (455)
                      .+++..+.+|
T Consensus       333 ~~~~~~~~~~  342 (381)
T 3c4a_A          333 TVEERMHLSS  342 (381)
T ss_dssp             TCSCC-----
T ss_pred             chhhhhcCCH
Confidence            8777766544

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.97  E-value=5.1e-29  Score=259.74  Aligned_cols=344  Identities=15%  Similarity=0.087  Sum_probs=194.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC------CCCEEEEcCCCCCCCC-CcccccChhHHHHHHhhhchHHHHHhcCCCcc
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKL------GIKCSVLEKNKAFSTH-PQAHFINNRYALVFRKLDGLAEEIERSQPPVD  113 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~------g~~V~l~Er~~~~~~~-~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~  113 (455)
                      .+++||+||||||+||++|+.|+++      |++|+||||.+.+..+ .++..+.+++++.|  + +-+   ...+.+..
T Consensus        33 ~~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~l--l-~~~---~~~g~~~~  106 (584)
T 2gmh_A           33 AEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEEL--F-PDW---KEKGAPLN  106 (584)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHH--C-TTH---HHHTCCCC
T ss_pred             ccCCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHH--H-HHH---HhcCCcee
Confidence            4579999999999999999999999      9999999999876543 45677888777655  3 222   22233321


Q ss_pred             c--cc-ceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccce
Q 012845          114 L--WR-KFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGRE  190 (455)
Q Consensus       114 ~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  190 (455)
                      .  .. .+.+. ...+. + ..+.......    .......++|..|.++|.+.+++.|+                   +
T Consensus       107 ~~~~~~~~~~~-~~~~~-~-~~~~~~~~~~----~~~~~~~v~r~~l~~~L~~~a~~~Gv-------------------~  160 (584)
T 2gmh_A          107 TPVTEDRFGIL-TEKYR-I-PVPILPGLPM----NNHGNYVVRLGHLVSWMGEQAEALGV-------------------E  160 (584)
T ss_dssp             EECCEEEEEEE-CSSCE-E-ECCCCTTSTT----CCTTCEECCHHHHHHHHHHHHHHTTC-------------------E
T ss_pred             eeechhheeee-ccCCC-c-cccccCcccc----ccCCCEEEeHHHHHHHHHHHHHHcCC-------------------E
Confidence            1  00 11111 11111 0 0110000000    11224568999999999999999887                   9


Q ss_pred             EEeccEEEEeeecCCc-eE-EEEEe---ccCCcc-----eeEEEEeCEEEeecCCCchhhhhc----CCCccCCccccee
Q 012845          191 ILMGHECVSVSATDQC-IN-VIASF---LKEGKC-----TERNIQCNILIGTDGAGSTVRKLV----GIDLVGEKDLQKL  256 (455)
Q Consensus       191 i~~~~~v~~i~~~~~~-~~-v~~~~---~~~g~~-----~~~~~~~d~vV~AdG~~S~vr~~l----~~~~~~~~~~~~~  256 (455)
                      |+++++|+++..++++ +. |.+..   ..+|..     ...++.+|+||+|||.+|.+|+++    +............
T Consensus       161 i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~vr~~l~~~~gl~~~~~p~~~g~  240 (584)
T 2gmh_A          161 VYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQTYGI  240 (584)
T ss_dssp             EETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCCEEE
T ss_pred             EEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCchHHHHHHHHhCCCCCCCchhHHh
Confidence            9999999999887643 43 44431   012310     013789999999999999999887    5432211111111


Q ss_pred             EEEEEecCCcccccccCCCceEEEEEc------cCceEEEEeecCCCCeEEEEeecCCCCCCCCCCC-HHHHHHHHH---
Q 012845          257 VSVHFLSKDLGDYLLNERPGMLFFIFN------TEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFS-PEICEKLIF---  326 (455)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~---  326 (455)
                      .......-..    ....++.....+.      ..+..+++..+...+.+.+.+........ ...+ .+.+.+++.   
T Consensus       241 g~~~~~~v~~----~~~~~~~~~~~~g~~~~~~~~gg~~~~~~~~~~~~~~vg~~~~~~~~~-~~~~~~~~l~~~~~~p~  315 (584)
T 2gmh_A          241 GLKELWVIDE----KKWKPGRVDHTVGWPLDRHTYGGSFLYHLNEGEPLLALGFVVGLDYQN-PYLSPFREFQRWKHHPS  315 (584)
T ss_dssp             EEEEEEECCG----GGCCTTEEEEEEETTSCTTSCEEEEEEECCSSSCEEEEEEEEETTCCC-TTCCHHHHHHHHTTSTT
T ss_pred             hhhhheecCc----ccccCCeEEEEEeccccCCcCCceEEEEecCCCCeEEEEEEEecCccc-ccCChHHHHHHHHhChH
Confidence            1111111110    0112333222221      01223333332113444444322111111 1112 233333211   


Q ss_pred             --HhhCCCCCCeeEEEeec---eEeceeeecccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCC-
Q 012845          327 --KLVGWELSDIDVIDIKP---WVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI-  400 (455)
Q Consensus       327 --~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~-  400 (455)
                        ..+.    ..+......   ++......+.+.  .+|++|||||||+++|+.|||+|+||+||..|+++|.++++.. 
T Consensus       316 i~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~--~~rv~LvGDAAh~~~P~~GqG~~~Ai~da~~LA~~L~~~~~~g~  389 (584)
T 2gmh_A          316 IKPTLE----GGKRIAYGARALNEGGFQSIPKLT--FPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLTSEN  389 (584)
T ss_dssp             THHHHT----TCEEEEEEEEEEECCGGGGCCCCE--ETTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHhC----CCeEEEecceEccCCCcccCCccc--cCCEEEEcccccccCccccccHHHHHHHHHHHHHHHHHHHHcCC
Confidence              1111    112221111   111122234444  3899999999999999999999999999999999999987533 


Q ss_pred             -CCchh---hhhHHHhhhHH-HHHhHHhHHHH
Q 012845          401 -APASI---LNTYETERKPI-AEFNTALSVQN  427 (455)
Q Consensus       401 -~~~~a---l~~Y~~~r~~~-~~~~~~~s~~~  427 (455)
                       ....+   |+.|++.|+++ +.+.+..+++.
T Consensus       390 ~~~~~a~~~L~~Ye~~r~~~~v~~~l~~~r~~  421 (584)
T 2gmh_A          390 LQSKTIGLHVTEYEDNLKNSWVWKELYSVRNI  421 (584)
T ss_dssp             CCCSSSSCCCTHHHHHHHTSHHHHHHHHTTTT
T ss_pred             cchhhhhhhHHHHHHHHHHhHHHHHHHHHhCh
Confidence             34554   99999999987 56666655544

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=99.97  E-value=5.1e-30  Score=264.90  Aligned_cols=346  Identities=13%  Similarity=0.117  Sum_probs=205.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHh------------CCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHH--HHh
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTK------------LGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEE--IER  107 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~------------~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~--l~~  107 (455)
                      ..+||+||||||+|+++|+.|++            .|++|+|||+.+.+.. +.|..+.+++..+|+.+ |+.+.  +..
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~~~~-g~g~~~~p~~~~~l~~l-Gi~e~~~~~~   83 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVATI-GVGEGTWPSMRSTLSKI-GIDENDFIRQ   83 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSCCCC-CSCEECCTHHHHHHHHH-TCCHHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCCCCc-ceeeechHhHHHHHHHc-CCCHHHHHHH
Confidence            46899999999999999999999            8999999999765543 34788899999999999 99886  555


Q ss_pred             cCCCcc------cccc--------eEEeecCCCCccccccC----C---Ccccc----------------------ccc-
Q 012845          108 SQPPVD------LWRK--------FIYCTSVTGPILGSVDH----M---QPQDF----------------------EKV-  143 (455)
Q Consensus       108 ~~~~~~------~~~~--------~~~~~~~~~~~~~~~~~----~---~~~~~----------------------~~~-  143 (455)
                      ......      .|..        ..++....+......+.    .   ....+                      ... 
T Consensus        84 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~v~~q~~~~~~~~~~~~~~~~~~~  163 (526)
T 2pyx_A           84 CDASFKQGSRFINWCKDPQSNVADSYLHPFSLPHGHQELDLCPYWLPHAEQVSFAEAVCSQQVLTQLGLAPKSIVTAQYH  163 (526)
T ss_dssp             TTCEEECEEEEESCSSCCBTTBCCEEEEESSCCTTTTTCCCHHHHGGGTTTSCHHHHHCSHHHHHHTTBCSSCTTSCTTC
T ss_pred             cCCEEECCCcccCCCccccCCCCCceecCCCCCCCCCCCChhHHHHhhhhccCchhhcccccchhhhccchhhhhccccC
Confidence            432211      1211        00111000000000000    0   00000                      000 


Q ss_pred             cCCccccccchhhHHHHHHHHHHh-cccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeE
Q 012845          144 VSPVSVAHFSQYKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTER  222 (455)
Q Consensus       144 ~~~~~~~~i~r~~l~~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~  222 (455)
                      .......+++|..|.+.|.+.+.+ .|+                   +++++ +|++++.++++..+.+.. .+|.    
T Consensus       164 ~~~~~~~~~~r~~l~~~L~~~a~~~~Gv-------------------~i~~~-~v~~i~~~~~g~~~~v~~-~~g~----  218 (526)
T 2pyx_A          164 FQNNYGYHLNAAKFSQLLTEHCTQKLGV-------------------THIRD-HVSQIINNQHGDIEKLIT-KQNG----  218 (526)
T ss_dssp             CSSCCEEEECHHHHHHHHHHHHHHTSCC-------------------EEEEC-CEEEEEECTTSCEEEEEE-SSSC----
T ss_pred             CCCCeeEEEcHHHHHHHHHHHHHhcCCC-------------------EEEEe-EEEEEEecCCCcEEEEEE-CCCC----
Confidence            112234678999999999999998 787                   88999 699998765554333221 1443    


Q ss_pred             EEEeCEEEeecCCCchh-hhhcCCCccCCcc---cceeEEEEEecCCcccccccCCCceEEEEEccCceEEEEeecCCCC
Q 012845          223 NIQCNILIGTDGAGSTV-RKLVGIDLVGEKD---LQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEG  298 (455)
Q Consensus       223 ~~~~d~vV~AdG~~S~v-r~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (455)
                      ++++|+||+|||.+|.+ ++.++........   ....+...........   ...+.... ...+.+..+.  .+....
T Consensus       219 ~i~ad~vV~AdG~~S~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~g~~~~--~pl~~~  292 (526)
T 2pyx_A          219 EISGQLFIDCTGAKSLLLGEHLQVPFLSQKSVLFNDRALAIQVPYSDANS---PIASCTHS-TAQPNGWIWD--IGLPTR  292 (526)
T ss_dssp             EEECSEEEECSGGGCCCCCCCTCCCEEECHHHHCCCEEEEEEEECSSTTC---CCCSSEEE-EEETTEEEEE--EECSSE
T ss_pred             EEEcCEEEECCCcchHHHHHHhCCCcccccccccCccEEEEEeeccCCCC---CCCCceeE-EecCCCeEEE--eeCCCc
Confidence            58999999999999999 6677765432221   1122222221111000   11122222 2333333333  343332


Q ss_pred             eEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEeceeeecccccCCCcEEEEcCccccCCCCcCcc
Q 012845          299 EFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFG  378 (455)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAAh~~~P~~G~G  378 (455)
                      .....+ +...     ..+++...+.+.+.+..............+++.......+.  .+||+|||||||+++|+.|||
T Consensus       293 ~~~~~v-~~~~-----~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~--~grv~LiGDAAh~~~P~~GqG  364 (526)
T 2pyx_A          293 KGVGYV-YSSS-----HTNDIDAQKTLFNYLGVDGAAADKLEPRQLAINPGYRAKCW--QNNCIAIGMAAGFIEPLEASA  364 (526)
T ss_dssp             EEEEEE-ECTT-----TCCHHHHHHHHHHHHTCCHHHHHHCCCEEEECCCEEESCSE--ETTEEECGGGTEECCCTTCHH
T ss_pred             eEEEEE-ecCC-----CCChHHHHHHHHHHHHhcCcccccCCceEEecccCcccccc--CCCEEEEEhhhcccCcccccc
Confidence            222211 1111     12334445555554422110110011123333333344444  399999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHH
Q 012845          379 MNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRA  430 (455)
Q Consensus       379 ~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~  430 (455)
                      +|+|++||..|+++|...  ......+++.|++.|+++.+.+.++...+|..
T Consensus       365 i~~ai~da~~La~~L~~~--~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~y~~  414 (526)
T 2pyx_A          365 LALIEWTASTLAQQLPPN--RMVMDTISARVNERYQQHWQQIIDFLKLHYVI  414 (526)
T ss_dssp             HHHHHHHHHHHHHTCCSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhhhc--CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999888521  11235789999999999999999988888764

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=99.96  E-value=2.8e-28  Score=251.20  Aligned_cols=338  Identities=14%  Similarity=0.133  Sum_probs=202.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHh---CCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHH--HHhcCCCcc----
Q 012845           43 VVPVLIVGAGPVGLVLSILLTK---LGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEE--IERSQPPVD----  113 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~---~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~--l~~~~~~~~----  113 (455)
                      .+||+|||||++|+++|+.|++   .|++|+||||.+.+ ..+.+..+.+.....++.+ |+.+.  +........    
T Consensus         2 ~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~~-~~~~g~~~~~~~~~~l~~l-gi~~~~~~~~~~~~~~~~~~   79 (511)
T 2weu_A            2 IRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVR-RIGVGEATFSTVRHFFDYL-GLDEREWLPRCAGGYKLGIR   79 (511)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--------CCEECCTTHHHHHHHH-TCCHHHHHHHTTCEEECEEE
T ss_pred             cceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCCC-ceeeccccCcchHHHHHHc-CCCHHHHHHHcCCeEeccce
Confidence            4699999999999999999999   99999999998643 3345667788888999999 88764  444332111    


Q ss_pred             --cccc---eEEeecC-----CCCcc------------c------------cccCCC----cccc----c------c--c
Q 012845          114 --LWRK---FIYCTSV-----TGPIL------------G------------SVDHMQ----PQDF----E------K--V  143 (455)
Q Consensus       114 --~~~~---~~~~~~~-----~~~~~------------~------------~~~~~~----~~~~----~------~--~  143 (455)
                        .|..   ..++...     .+...            .            ......    ...+    .      .  .
T Consensus        80 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  159 (511)
T 2weu_A           80 FENWSEPGEYFYHPFERLRVVDGFNMAEWWLAVGDRRTSFSEACYLTHRLCEAKRAPRMLDGSLFASQVDESLGRSTLAE  159 (511)
T ss_dssp             EESSSSTTCEEEEESCCCCEETTEEHHHHHHHHC----CHHHHHCHHHHHHHTTBCSBCTTSCBCC------CCSCCGGG
T ss_pred             ecCCCCCCCceEcCCCCCCCCCCCchHHHHHhccccccCcccccccccCHHHhhhhHHhHhcCCcccccccccccccccc
Confidence              1110   0000000     00000            0            000000    0000    0      0  0


Q ss_pred             cC--CccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCc--eEEEEEeccCCcc
Q 012845          144 VS--PVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC--INVIASFLKEGKC  219 (455)
Q Consensus       144 ~~--~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~--~~v~~~~~~~g~~  219 (455)
                      ..  .....+++|..|.+.|.+.+.+.|+                   +++++ +|++++.++++  +.|++.   +|. 
T Consensus       160 ~~~~~~~~~~~~~~~l~~~L~~~a~~~gv-------------------~~~~~-~v~~i~~~~~~~~~~v~~~---~g~-  215 (511)
T 2weu_A          160 QRAQFPYAYHFDADEVARYLSEYAIARGV-------------------RHVVD-DVQHVGQDERGWISGVHTK---QHG-  215 (511)
T ss_dssp             CCSCCSCEEEECHHHHHHHHHHHHHHTTC-------------------EEEEC-CEEEEEECTTSCEEEEEES---SSC-
T ss_pred             CcCCCCeeEEEcHHHHHHHHHHHHHHCCC-------------------EEEEC-eEeEEEEcCCCCEEEEEEC---CCC-
Confidence            00  1234678999999999999999887                   89999 99999886555  334444   554 


Q ss_pred             eeEEEEeCEEEeecCCCchhhh-hcCCCccCC---cccceeEEEEEecCCcccccccCCCceEEEEEccCceEEEEeecC
Q 012845          220 TERNIQCNILIGTDGAGSTVRK-LVGIDLVGE---KDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDL  295 (455)
Q Consensus       220 ~~~~~~~d~vV~AdG~~S~vr~-~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (455)
                         ++++|+||+|||.+|.+++ .++......   ......+.........    ....+.. .....+.+..+++  |.
T Consensus       216 ---~~~ad~vV~A~G~~S~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~g~~~~~--P~  285 (511)
T 2weu_A          216 ---EISGDLFVDCTGFRGLLINQTLGGRFQSFSDVLPNNRAVALRVPREND----EDMRPYT-TATAMSAGWMWTI--PL  285 (511)
T ss_dssp             ---EEECSEEEECCGGGCCCCCCCTCCCEEECTTTCCCCEEEEEEEECSSG----GGCCSSE-EEEEETTEEEEEE--EC
T ss_pred             ---EEEcCEEEECCCcchHHHHHHhCCCCccccccCcccceEEEEeccCCC----CCCCcce-eceecCCCcEEEE--EC
Confidence               7899999999999999954 556544321   1112222222211111    0011222 2233444444443  33


Q ss_pred             CCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEeceeeecccccCCCcEEEEcCccccCCCCc
Q 012845          296 KEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAG  375 (455)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAAh~~~P~~  375 (455)
                      .+ +..+.+.+..     ...+++...+.+.+.++..+...+   ...+++.....+.+.  .+|+++||||||+++|+.
T Consensus       286 ~~-~~~~g~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~rv~liGDAAh~~~P~~  354 (511)
T 2weu_A          286 FK-RDGNGYVYSD-----EFISPEEAERELRSTVAPGRDDLE---ANHIQMRIGRNERTW--INNCVAVGLSAAFVEPLE  354 (511)
T ss_dssp             SS-EEEEEEEECT-----TTSCHHHHHHHHHHHHCTTCTTSC---CEEEECCCEEESCSE--ETTEEECGGGTEECCGGG
T ss_pred             CC-ceEEEEEECC-----CCCCHHHHHHHHHHHhCccccccc---ceeEEeecccccccc--CCCEEEEechhhccCccc
Confidence            33 3333322221     123455566666666654422111   111222222333433  389999999999999999


Q ss_pred             CccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHH
Q 012845          376 GFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRA  430 (455)
Q Consensus       376 G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~  430 (455)
                      |+|+++|++||..|+++|.+   +.....+|+.|++.|+++.+.+.++...+|..
T Consensus       355 g~G~~~a~~da~~La~~l~~---~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~y~~  406 (511)
T 2weu_A          355 STGIFFIQHAIEQLVKHFPG---ERWDPVLISAYNERMAHMVDGVKEFLVLHYKG  406 (511)
T ss_dssp             CCHHHHHHHHHHHHHHTCCC---TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999998863   34456899999999999999999888777763

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=99.96  E-value=4.2e-28  Score=251.30  Aligned_cols=339  Identities=13%  Similarity=0.132  Sum_probs=203.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHh---CCCCEEEEcCCCCCCCCCcccccChhHHH-HHHhhhchHHH--HHhcCCCcc-
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTK---LGIKCSVLEKNKAFSTHPQAHFINNRYAL-VFRKLDGLAEE--IERSQPPVD-  113 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~---~g~~V~l~Er~~~~~~~~~~~~l~~~~~~-~l~~~~gl~~~--l~~~~~~~~-  113 (455)
                      +..+||+|||||++|+++|+.|++   .|++|+|||+...+. .+.+..+.+.... +++.+ |+.+.  +........ 
T Consensus         3 ~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~~-~~~g~~~~~~~~~~~l~~l-G~~~~~~~~~~~~~~~~   80 (538)
T 2aqj_A            3 KPIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIPR-IGVGEATIPSLQKVFFDFL-GIPEREWMPQVNGAFKA   80 (538)
T ss_dssp             CBCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSSCC-CCSCEECCTHHHHHTHHHH-TCCHHHHGGGGTCEEEC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCCCC-cCCCcccchhHHHHHHHHh-CCCHHHHHHhcCchhhC
Confidence            346899999999999999999999   999999999976543 3346778888888 89988 88754  333222111 


Q ss_pred             -----cccce------EEeecCCCCccccccCCC-------------ccc--------------------cccccCCccc
Q 012845          114 -----LWRKF------IYCTSVTGPILGSVDHMQ-------------PQD--------------------FEKVVSPVSV  149 (455)
Q Consensus       114 -----~~~~~------~~~~~~~~~~~~~~~~~~-------------~~~--------------------~~~~~~~~~~  149 (455)
                           .|...      .......|... ......             ...                    ..........
T Consensus        81 g~~~~~w~~~l~~~~~~~~~~~~g~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  159 (538)
T 2aqj_A           81 AIKFVNWRKSPDPSRDDHFYHLFGNVP-NCDGVPLTHYWLRKREQGFQQPMEYACYPQPGALDGKLAPCLSDGTRQMSHA  159 (538)
T ss_dssp             EEEEESCSSSCCTTSCCEEEEESSCCC-EETTEEHHHHHHHHHHTTCCSCHHHHHCSCHHHHHTTBCSBCTTCCBCSCCE
T ss_pred             CccccCcCcccccCCCCceECCCCccC-ccccCchhHHHHHhcccccccCccccccccccHhhhccchHhhcCCcCCCcc
Confidence                 11100      00000111100 000000             000                    0000011234


Q ss_pred             cccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCce--EEEEEeccCCcceeEEEEeC
Q 012845          150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCI--NVIASFLKEGKCTERNIQCN  227 (455)
Q Consensus       150 ~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~--~v~~~~~~~g~~~~~~~~~d  227 (455)
                      .++++..|.+.|.+.+.+.|+                   +++.+ +|+++..++++.  .|.+.   +|.    ++++|
T Consensus       160 ~~i~~~~l~~~L~~~a~~~gv-------------------~~~~~-~v~~i~~~~~g~~~~v~~~---~g~----~i~ad  212 (538)
T 2aqj_A          160 WHFDAHLVADFLKRWAVERGV-------------------NRVVD-EVVDVRLNNRGYISNLLTK---EGR----TLEAD  212 (538)
T ss_dssp             EEECHHHHHHHHHHHHHHTTC-------------------EEEEC-CEEEEEECTTSCEEEEEET---TSC----EECCS
T ss_pred             EEEeHHHHHHHHHHHHHHCCC-------------------EEEEe-eEeEEEEcCCCcEEEEEEC---CCc----EEEeC
Confidence            678999999999999999886                   88899 899998765543  34443   553    78999


Q ss_pred             EEEeecCCCchhhh-hcCCCccCCcc---cceeEEEEEecCCcccccccCCCceEEEEEccCceEEEEeecCCCCeEEEE
Q 012845          228 ILIGTDGAGSTVRK-LVGIDLVGEKD---LQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQ  303 (455)
Q Consensus       228 ~vV~AdG~~S~vr~-~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (455)
                      +||+|||.+|.+|+ .++..+.....   ....+..........   ....+... ....+.+..+.++.  .+. ..+.
T Consensus       213 ~vV~A~G~~s~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~g~~~~~p~--~~~-~~~g  285 (538)
T 2aqj_A          213 LFIDCSGMRGLLINQALKEPFIDMSDYLLCDSAVASAVPNDDAR---DGVEPYTS-SIAMNSGWTWKIPM--LGR-FGSG  285 (538)
T ss_dssp             EEEECCGGGCCCCCCCTCCCEEECTTTCCCCEEEEEEEECCHHH---HCCCSSEE-EEECSSEEEEEEEE--TTE-EEEE
T ss_pred             EEEECCCCchhhHHHHhCCCccccccccccceEEEEecccCCcc---cCCCCcee-eeecCCceEEEecC--CCc-eEEE
Confidence            99999999999954 45654322211   112222222111000   00111111 22334444344333  332 2222


Q ss_pred             eecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEeceeeecccccCCCcEEEEcCccccCCCCcCccchhhH
Q 012845          304 VPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGV  383 (455)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al  383 (455)
                      ..+..     ...+++...+.+.+.+.....    .....+++.......+.  .+||+|||||||+++|+.|||+|+|+
T Consensus       286 ~v~~~-----~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~--~grvvliGDAAh~~~P~~gqG~~~a~  354 (538)
T 2aqj_A          286 YVFSS-----HFTSRDQATADFLKLWGLSDN----QPLNQIKFRVGRNKRAW--VNNCVSIGLSSCFLEPLESTGIYFIY  354 (538)
T ss_dssp             EEECT-----TTSCHHHHHHHHHHHHTCCTT----CCCEEEECCCEEESCSE--ETTEEECGGGTEECCGGGSCHHHHHH
T ss_pred             EEEcC-----CCCChHHHHHHHHHHhcCCCC----CCceEEeeccccccccc--cCCEEEEcccccccCcchhccHHHHH
Confidence            22211     112445566666666643211    11122333333344444  39999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHH
Q 012845          384 QDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRA  430 (455)
Q Consensus       384 ~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~  430 (455)
                      +||..|+++|.   .+.....+|+.|++.|+++.+.+.++...+|..
T Consensus       355 ~da~~La~~L~---~~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~y~~  398 (538)
T 2aqj_A          355 AALYQLVKHFP---DTSFDPRLSDAFNAEIVHMFDDCRDFVQAHYFT  398 (538)
T ss_dssp             HHHHHHHHTCC---BTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhh---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999998875   234456899999999999999988877777753

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=99.96  E-value=6.7e-28  Score=250.17  Aligned_cols=339  Identities=11%  Similarity=0.073  Sum_probs=205.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHh---CCCCEEEEcCCCCCCCCCcccccChhHHH-HHHhhhchHHH--HHhcCCCc---
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTK---LGIKCSVLEKNKAFSTHPQAHFINNRYAL-VFRKLDGLAEE--IERSQPPV---  112 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~---~g~~V~l~Er~~~~~~~~~~~~l~~~~~~-~l~~~~gl~~~--l~~~~~~~---  112 (455)
                      ..+||+|||||++|+++|+.|++   .|++|+|||+.+.+. .+.+..+.+.+.. +++.+ |+.+.  +.......   
T Consensus        24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~~-~~~g~~~~p~~~~~~l~~l-Gi~~~~~~~~~~~~~~~g  101 (550)
T 2e4g_A           24 KIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPT-LGVGEATIPNLQTAFFDFL-GIPEDEWMRECNASYKVA  101 (550)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCCCC-CCCCEECCTHHHHHTHHHH-TCCHHHHHHHTTCEEECE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCCCc-cceeeeechhHHHHHHHHh-CCChHHHHHhcCCeEEEe
Confidence            46899999999999999999999   999999999976543 3346788888888 99999 98765  54432211   


Q ss_pred             ---ccccce---------------EEeecCCCCcc-------ccc----c-----CCC----------cccc-------c
Q 012845          113 ---DLWRKF---------------IYCTSVTGPIL-------GSV----D-----HMQ----------PQDF-------E  141 (455)
Q Consensus       113 ---~~~~~~---------------~~~~~~~~~~~-------~~~----~-----~~~----------~~~~-------~  141 (455)
                         ..|...               .+.. ..+...       ...    .     ...          ..+.       .
T Consensus       102 ~~~~~w~~~~~~~~~~~l~~~~~~~~~~-~~g~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (550)
T 2e4g_A          102 IKFINWRTAGEGTSEARELDGGPDHFYH-SFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLD  180 (550)
T ss_dssp             EEEESSSSCCCCCSSCCEETTEESEEEE-ESSCCCEETTEEHHHHHHHHHHTTSCCCCHHHHHCSHHHHHHTTBCSBCTT
T ss_pred             eeEeecccccccccccccccCCCCeeEe-cCCccCCCCcccHHHHHHhhcccccccccccccccchhhHHHhhhhhHhhc
Confidence               112110               0000 001000       000    0     000          0000       0


Q ss_pred             cccCCccccccchhhHHHHHHHHHHhc-ccccccCCCcccccccccccceEEeccEEEEeeecCCc--eEEEEEeccCCc
Q 012845          142 KVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC--INVIASFLKEGK  218 (455)
Q Consensus       142 ~~~~~~~~~~i~r~~l~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~--~~v~~~~~~~g~  218 (455)
                      .........++++..|.+.|.+.+.+. |+                   +++++ +|+++..++++  +.|.+.   +|.
T Consensus       181 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~Gv-------------------~i~~~-~V~~i~~~~~g~~~~v~~~---~G~  237 (550)
T 2e4g_A          181 GSKVTNYAWHFDAHLVADFLRRFATEKLGV-------------------RHVED-RVEHVQRDANGNIESVRTA---TGR  237 (550)
T ss_dssp             SCBCSCCEEEECHHHHHHHHHHHHHHHSCC-------------------EEEEC-CEEEEEECTTSCEEEEEET---TSC
T ss_pred             CCCCCCcceEEcHHHHHHHHHHHHHhcCCc-------------------EEEEC-eEeEEEEcCCCCEEEEEEC---CCC
Confidence            000112246689999999999999998 87                   89999 99999876554  334443   554


Q ss_pred             ceeEEEEeCEEEeecCCCchh-hhhcCCCccCCc---ccceeEEEEEecCCcccccccCCCceEEEEEccCceEEEEeec
Q 012845          219 CTERNIQCNILIGTDGAGSTV-RKLVGIDLVGEK---DLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHD  294 (455)
Q Consensus       219 ~~~~~~~~d~vV~AdG~~S~v-r~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (455)
                          ++.+|+||+|||.+|.+ ++.++..+....   .....+.........   .....+... ....+.+..+.++. 
T Consensus       238 ----~i~ad~vI~A~G~~S~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~g~~~~ipl-  308 (550)
T 2e4g_A          238 ----VFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDD---ANGVEPFTS-AIAMKSGWTWKIPM-  308 (550)
T ss_dssp             ----EEECSEEEECCGGGCCCCCCCTCCCEEECTTTCCCCEEEEEEEECCHH---HHCCCSSEE-EEECSSEEEEEEEC-
T ss_pred             ----EEECCEEEECCCCchhhHHHHhCCCcccccccccccceEEEeecccCC---cccCCCcee-eeecCCceEEEccC-
Confidence                78999999999999998 556665433221   111122211111100   000112222 22223333333333 


Q ss_pred             CCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEeceeeecccccCCCcEEEEcCccccCCCC
Q 012845          295 LKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPA  374 (455)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvliGDAAh~~~P~  374 (455)
                       .. .......+..     ...+++...+.+.+.++..+...+   ...+++.....+.+.  .+|+++||||||+++|+
T Consensus       309 -~~-~~~~g~v~~~-----~~~~~~~~~~~l~~~~~~~p~l~~---~~~i~~~~~~~~~~~--~~rvvliGDAAh~~~P~  376 (550)
T 2e4g_A          309 -LG-RFGTGYVYSS-----RFATEDEAVREFCEMWHLDPETQP---LNRIRFRVGRNRRAW--VGNCVSIGTSSCFVEPL  376 (550)
T ss_dssp             -SS-EEEEEEEECT-----TTSCHHHHHHHHHHHTTCCTTTSC---CEEEECCCEEESCSE--ETTEEECSTTTEECCGG
T ss_pred             -CC-ccceEEEEec-----CCCChHHHHHHHHHhhCcCcccCC---CceEEecCCCccccc--cCCEEEEehhhcccCcc
Confidence             22 2222222211     112455566666666654321111   111222223333333  38999999999999999


Q ss_pred             cCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHH
Q 012845          375 GGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRA  430 (455)
Q Consensus       375 ~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~  430 (455)
                      +|||+++|++||..|+++|.+   +.....+|+.|++.|+++...+.++...+|..
T Consensus       377 ~GqGi~~a~~da~~La~~L~~---~~~~~~~l~~Y~~~~~~~~~~i~~~~~~~y~~  429 (550)
T 2e4g_A          377 ESTGIYFVYAALYQLVKHFPD---KSLNPVLTARFNREIETMFDDTRDFIQAHFYF  429 (550)
T ss_dssp             GSCHHHHHHHHHHHHHHTCCC---TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             chhhHHHHHHHHHHHHHhccc---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999988752   34567899999999999999999998888874

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=99.93  E-value=1.3e-25  Score=226.11  Aligned_cols=323  Identities=13%  Similarity=0.013  Sum_probs=175.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC----cccccChhHHHHHHhhhch--HHHHHhcCCCcccc
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP----QAHFINNRYALVFRKLDGL--AEEIERSQPPVDLW  115 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~----~~~~l~~~~~~~l~~~~gl--~~~l~~~~~~~~~~  115 (455)
                      +++||+||||||+|+++|+.|+++|++|+||||.+.+....    ....+...++..++.+ |+  +....   .+.   
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~g~~~~~~~~~~~~~~~~~~l-g~~~~~~~~---~~~---   93 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTVQREVAL-DVNEWPSEE---FGY---   93 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCCGGGSTTSCCCCCCCBCHHHHHHHHHT-TCCCSCHHH---HCE---
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCChHhhcccccccchhccchhhhhhhhc-Chhhhhhhc---ccc---
Confidence            45799999999999999999999999999999987432211    1223345566666665 43  11111   011   


Q ss_pred             cceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEecc
Q 012845          116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH  195 (455)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~  195 (455)
                      ..........+ .         .++.... ......+++..+...|.+.+.+.|+                   ++++..
T Consensus        94 ~~~~~~~~~~~-~---------~~~~~~~-~~~~~~v~~~~l~~~L~~~~~~~Gv-------------------~v~~~~  143 (430)
T 3ihm_A           94 FGHYYYVGGPQ-P---------MRFYGDL-KAPSRAVDYRLYQPMLMRALEARGG-------------------KFCYDA  143 (430)
T ss_dssp             EEEEEEECSSS-C---------EEEEEEE-EEEEBEECHHHHHHHHHHHHHHTTC-------------------EEEECC
T ss_pred             cceeEEECCCC-c---------cccchhc-CCcceeecHHHHHHHHHHHHHHcCC-------------------EEEEEe
Confidence            11111111110 0         0110000 1123567889999999999999886                   665521


Q ss_pred             -EEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCC-CccCCcccceeEEEEEecCCcccccccC
Q 012845          196 -ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGI-DLVGEKDLQKLVSVHFLSKDLGDYLLNE  273 (455)
Q Consensus       196 -~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (455)
                       .+.+++.              -     ...+|+||+|||.+|.++..... ........+......+......    ..
T Consensus       144 v~~~~l~~--------------~-----~~~ad~VV~AdG~~S~~~~~~~~~~~~~~~~p~r~~~~~~~~g~~~----~~  200 (430)
T 3ihm_A          144 VSAEDLEG--------------L-----SEQYDLLVVCTGKYALGKVFEKQSENSPFEKPQRALCVGLFKGIKE----AP  200 (430)
T ss_dssp             CCGGGHHH--------------H-----HTTSSEEEECCCCTTGGGGSCBCGGGCCCSSCSSEEEEEEEESBCC----CS
T ss_pred             cchhhhhh--------------h-----cccCCEEEECCCCcchHHhccCCCCCCcccCCCeeEEEEEEccCCC----CC
Confidence             0111100              0     11489999999999988643311 1111222222222222222111    11


Q ss_pred             CCceEEEEEccCceEEEEeecCCCCeEEEEeecCCCCCC---CCC----CCHHH----HHHHHHHhhCCC---C---C--
Q 012845          274 RPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQN---LED----FSPEI----CEKLIFKLVGWE---L---S--  334 (455)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~----~~~~l~~~~~~~---~---~--  334 (455)
                      .....+.++.+.+..++++.....+...+.+.+..+...   ...    .+++.    +.+.+..+.++.   .   .  
T Consensus       201 ~~~~~~~~~~~~G~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (430)
T 3ihm_A          201 IRAVTMSFSPGHGELIEIPTLSFNGMSTALVLENHIGSDLEVLAHTKYDDDPRAFLDLMLEKLGKHHPSVAERIDPAEFD  280 (430)
T ss_dssp             SCCEEEEEETTTEEEEEEEEEETTEEEEEEEEEECTTSSSGGGGTSCTTTCHHHHHHHHHHHHHHHCHHHHTTBCTTTCE
T ss_pred             cCeeeeeecCCCcceEEecccCCCcceEEEEEEecCCCcHHHhccccCCCCHHHHHHHHHHHHHHhCccHHHHHhhchhc
Confidence            233444455544444444433233333332222222211   111    13332    233333322110   0   1  


Q ss_pred             ----CeeEEEeeceEeceeeecccccCCCcEEE-EcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhH
Q 012845          335 ----DIDVIDIKPWVMHAEVAEKFLCCYNQIIL-AGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTY  409 (455)
Q Consensus       335 ----~~~~~~~~~~~~~~~~~~~~~~~~~~vvl-iGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y  409 (455)
                          ...+.....|+........|.  .++++| +|||||.++|++|||+|+||+||..|+++|.+.   .+...+|..|
T Consensus       281 ~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~ll~GDAah~~~p~~g~G~~~a~~da~~l~~~l~~~---~~~~~~~~~~  355 (430)
T 3ihm_A          281 LANSSLDILQGGVVPAFRDGHATLN--NGKTIIGLGDIQATVDPVLGQGANMASYAAWILGEEILAH---SVYDLRFSEH  355 (430)
T ss_dssp             ESSSTTSEEEECCCCEEBCSEEECT--TSCEEEECGGGTEECCGGGCCHHHHHHHHHHHHHHHHHHC---SCCSHHHHHH
T ss_pred             cccCccceeecceeecccccccccC--CCCEEEEecCccccCCCchhhhHHHHHHHHHHHHHHHHhc---CCHHHHHHHH
Confidence                111222223333333344554  488888 999999999999999999999999999999874   3478999999


Q ss_pred             HHhhh-HHHHHhHHhHHHHHH
Q 012845          410 ETERK-PIAEFNTALSVQNFR  429 (455)
Q Consensus       410 ~~~r~-~~~~~~~~~s~~~~~  429 (455)
                      +..|+ .+++...++++....
T Consensus       356 ~~~r~~~~~~~~~~~~~~~~~  376 (430)
T 3ihm_A          356 LERRRQDRVLCATRWTNFTLS  376 (430)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhC
Confidence            99998 777777777766643

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.91  E-value=4e-24  Score=218.81  Aligned_cols=316  Identities=20%  Similarity=0.214  Sum_probs=181.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      ...+||+|||||++|+++|+.|++.|++|+||||.+.+.. .....+.+.+++.+..+ |+++....          +  
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~-~~~~~~~~~~~~~l~~~-g~~~~~~~----------~--  155 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSR-HNVLHLWPFTIHDLRAL-GAKKFYGR----------F--  155 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCC-CCEEECCHHHHHHHHTT-THHHHCTT----------T--
T ss_pred             cCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCC-CCcccCChhHHHHHHHc-CCcccccc----------c--
Confidence            3568999999999999999999999999999999876532 24456778888888888 77642100          0  


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                              .                ......+++..+.+.|.+.+.+.|+                   +|+++++|+++
T Consensus       156 --------~----------------~~~~~~~~~~~l~~~L~~~~~~~gv-------------------~v~~~~~v~~i  192 (497)
T 2bry_A          156 --------C----------------TGTLDHISIRQLQLLLLKVALLLGV-------------------EIHWGVKFTGL  192 (497)
T ss_dssp             --------T----------------CTTCCEEEHHHHHHHHHHHHHHTTC-------------------EEEESCEEEEE
T ss_pred             --------c----------------ccccccCCHHHHHHHHHHHHHhCCC-------------------EEEeCCEEEEE
Confidence                    0                0001246788999999999998886                   99999999999


Q ss_pred             eec---CCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCce
Q 012845          201 SAT---DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM  277 (455)
Q Consensus       201 ~~~---~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (455)
                      +.+   ++.+.|++....+|  ...++.+|+||+|||.+|.+|+..+....+...+......... ............+.
T Consensus       193 ~~~~~~~~~~~v~~~~~~~g--~~~~i~ad~VV~A~G~~S~~r~~~~~~~~g~~~~~~~~~l~~~-~~~~~~~~~~~~G~  269 (497)
T 2bry_A          193 QPPPRKGSGWRAQLQPNPPA--QLASYEFDVLISAAGGKFVPEGFTIREMRGKLAIGITANFVNG-RTVEETQVPEISGV  269 (497)
T ss_dssp             ECCCSTTCCBEEEEESCCCH--HHHTCCBSEEEECCCTTCCCTTCEEEEEECSCCEEEEEEEECC-CCHHHHTSCCBCC-
T ss_pred             EEecCCCCEEEEEEEECCCC--CEEEEEcCEEEECCCCCcccccccchhhcCceeEeeeeeeeee-ccccccchhhcCce
Confidence            864   34566666411022  1125789999999999999998776555544332222111100 00000000001111


Q ss_pred             EEEEEcc---------Cc--eEEEEeecCCCCeEEEEee---------cCCCCC------CCCCCCHHHHHH---HHHHh
Q 012845          278 LFFIFNT---------EA--IGVLVAHDLKEGEFILQVP---------FYPPQQ------NLEDFSPEICEK---LIFKL  328 (455)
Q Consensus       278 ~~~~~~~---------~~--~~~~~~~~~~~~~~~~~~~---------~~~~~~------~~~~~~~~~~~~---~l~~~  328 (455)
                      .+ .+.+         .+  ...++..+.....+.....         +.....      .....+.+.+..   ....+
T Consensus       270 ~~-~~~~~~f~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  348 (497)
T 2bry_A          270 AR-IYNQKFFQSLLKATGIDLENIVYYKDETHYFVMTAKKQCLLRLGVLRQDLSETDQLLGKANVVPEALQRFARAAADF  348 (497)
T ss_dssp             ----CCSSHHHHHHHHHCCCEEEEEEEESSEEEEEEEECHHHHHHTTSBSSCCSSHHHHTSTTTBCHHHHHHHHHHHHHH
T ss_pred             EE-ecChhhhHhHHhhcCCCcccccccCCCeEEEEeccccccccccceeeccccchHhhhhhccCCHHHHHHhhcccccc
Confidence            11 0000         00  1111111111111111100         000000      001122222111   01111


Q ss_pred             h--------C---CCCC--Ce---eEEEeeceEeceeeecccccCCCc-EEEEcCccccCCCCcCccchhhHHHHHHHHH
Q 012845          329 V--------G---WELS--DI---DVIDIKPWVMHAEVAEKFLCCYNQ-IILAGDACHRFPPAGGFGMNTGVQDAHNLAW  391 (455)
Q Consensus       329 ~--------~---~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~-vvliGDAAh~~~P~~G~G~~~Al~da~~La~  391 (455)
                      .        .   ....  ..   ++.....|++.....+.|..  +| ++|+|||+|...|-.|||+|.++.||..|++
T Consensus       349 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~a~~~~~--gRr~~l~Gda~~~~~~p~g~G~n~g~~~a~~l~~  426 (497)
T 2bry_A          349 ATHGKLGKLEFAQDARGRPDVAAFDFTSMMRAESSARVQEKHGA--RLLLGLVGDCLVEPFWPLGTGVARGFLAAFDAAW  426 (497)
T ss_dssp             HTTTTTCSCCBCBCTTSSBCEEEEECSEEEEESCSEEEEEETTE--EEEEEECGGGTBCCCGGGCCHHHHHHHHHHHHHH
T ss_pred             chhhccccchhhhhccCCCCCceeeeEEEEecchhhHHHHhcCC--cccceEeccccccCcCccccchhhHHHHHHHHHH
Confidence            1        1   1111  11   22334456666777788875  87 9999999994443399999999999999999


Q ss_pred             HHHHhHcCCCCchhhhhHHHhhhHHHHHhHHh
Q 012845          392 KIASVLKDIAPASILNTYETERKPIAEFNTAL  423 (455)
Q Consensus       392 ~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~  423 (455)
                      .|...+++....+.|    ..|++..+.+.+.
T Consensus       427 ~l~~~~~g~~~~~~l----~~r~~~~~~l~~~  454 (497)
T 2bry_A          427 MVKRWAEGAGPLEVL----AERESLYQLLSQT  454 (497)
T ss_dssp             HHHHHHTTCCHHHHH----HHHHHHHTTGGGC
T ss_pred             HHHHHhCCCCccchh----hhHHHHhhhhhhc
Confidence            999987665555555    6777766654443

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.66  E-value=2.3e-15  Score=148.67  Aligned_cols=70  Identities=20%  Similarity=0.297  Sum_probs=56.8

Q ss_pred             cccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEE
Q 012845          150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNIL  229 (455)
Q Consensus       150 ~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~v  229 (455)
                      ..++...+.+.|.+.+.+.|+                   +++.+++|++++.+++.+.|.+.   +|     ++.+|.|
T Consensus       159 ~~~~~~~~~~~l~~~~~~~g~-------------------~i~~~~~v~~i~~~~~~~~v~~~---~g-----~~~a~~v  211 (382)
T 1ryi_A          159 VHVEPYFVCKAYVKAAKMLGA-------------------EIFEHTPVLHVERDGEALFIKTP---SG-----DVWANHV  211 (382)
T ss_dssp             CBCCHHHHHHHHHHHHHHTTC-------------------EEETTCCCCEEECSSSSEEEEET---TE-----EEEEEEE
T ss_pred             eEEcHHHHHHHHHHHHHHCCC-------------------EEEcCCcEEEEEEECCEEEEEcC---Cc-----eEEcCEE
Confidence            456778899999999999887                   99999999999887777755443   33     6799999


Q ss_pred             EeecCCCch-hhhhcCCC
Q 012845          230 IGTDGAGST-VRKLVGID  246 (455)
Q Consensus       230 V~AdG~~S~-vr~~l~~~  246 (455)
                      |.|+|.+|. +.+.++..
T Consensus       212 V~A~G~~s~~l~~~~~~~  229 (382)
T 1ryi_A          212 VVASGVWSGMFFKQLGLN  229 (382)
T ss_dssp             EECCGGGTHHHHHHTTCC
T ss_pred             EECCChhHHHHHHhcCCC
Confidence            999999987 77777643

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.63  E-value=9.5e-15  Score=144.25  Aligned_cols=70  Identities=14%  Similarity=0.230  Sum_probs=56.4

Q ss_pred             cccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCE
Q 012845          150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNI  228 (455)
Q Consensus       150 ~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~  228 (455)
                      ..++...+.+.|.+.+.+.|+                   +++.+++|++++.+++.+. |.+.   +|     ++.+|.
T Consensus       144 ~~~~~~~l~~~l~~~~~~~Gv-------------------~i~~~~~v~~i~~~~~~v~gv~~~---~g-----~i~a~~  196 (382)
T 1y56_B          144 GKADPFEATTAFAVKAKEYGA-------------------KLLEYTEVKGFLIENNEIKGVKTN---KG-----IIKTGI  196 (382)
T ss_dssp             CEECHHHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEESSSBEEEEEET---TE-----EEECSE
T ss_pred             eeECHHHHHHHHHHHHHHCCC-------------------EEECCceEEEEEEECCEEEEEEEC---Cc-----EEECCE
Confidence            346778899999999999887                   9999999999998877766 5543   44     689999


Q ss_pred             EEeecCCCc-hhhhhcCCC
Q 012845          229 LIGTDGAGS-TVRKLVGID  246 (455)
Q Consensus       229 vV~AdG~~S-~vr~~l~~~  246 (455)
                      ||.|+|.+| .+.+.++..
T Consensus       197 VV~A~G~~s~~l~~~~g~~  215 (382)
T 1y56_B          197 VVNATNAWANLINAMAGIK  215 (382)
T ss_dssp             EEECCGGGHHHHHHHHTCC
T ss_pred             EEECcchhHHHHHHHcCCC
Confidence            999999998 466766643

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.62  E-value=9.8e-15  Score=145.19  Aligned_cols=71  Identities=11%  Similarity=0.221  Sum_probs=55.8

Q ss_pred             cccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCce-EEEEEeccCCcceeEEEEeCE
Q 012845          150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCI-NVIASFLKEGKCTERNIQCNI  228 (455)
Q Consensus       150 ~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~-~v~~~~~~~g~~~~~~~~~d~  228 (455)
                      ..++...+.+.|.+.+++.|+                   +++++++|+++..+++.+ .+.+.   +|     ++.+|.
T Consensus       169 ~~~~~~~~~~~l~~~~~~~g~-------------------~i~~~~~v~~i~~~~~~~~~v~~~---~g-----~~~a~~  221 (405)
T 2gag_B          169 GIAKHDHVAWAFARKANEMGV-------------------DIIQNCEVTGFIKDGEKVTGVKTT---RG-----TIHAGK  221 (405)
T ss_dssp             BBCCHHHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEESSSBEEEEEET---TC-----CEEEEE
T ss_pred             ccCCHHHHHHHHHHHHHHCCC-------------------EEEcCCeEEEEEEeCCEEEEEEeC---Cc-----eEECCE
Confidence            445667899999999999887                   999999999998876653 34433   44     578999


Q ss_pred             EEeecCCCc-hhhhhcCCCc
Q 012845          229 LIGTDGAGS-TVRKLVGIDL  247 (455)
Q Consensus       229 vV~AdG~~S-~vr~~l~~~~  247 (455)
                      ||.|+|.+| .+++.++...
T Consensus       222 vV~a~G~~s~~l~~~~g~~~  241 (405)
T 2gag_B          222 VALAGAGHSSVLAEMAGFEL  241 (405)
T ss_dssp             EEECCGGGHHHHHHHHTCCC
T ss_pred             EEECCchhHHHHHHHcCCCC
Confidence            999999998 5788777554

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.60  E-value=2.5e-14  Score=133.45  Aligned_cols=37  Identities=30%  Similarity=0.539  Sum_probs=34.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      ++||+|||||||||++|+.|+++|++|+||||.+.+.
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~G   38 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSG   38 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence            5899999999999999999999999999999988764

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.58  E-value=2.5e-13  Score=134.27  Aligned_cols=173  Identities=14%  Similarity=0.194  Sum_probs=99.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCc----cccc------ChhHHHH-HHhhhchHHHHHhc-CC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQ----AHFI------NNRYALV-FRKLDGLAEEIERS-QP  110 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~----~~~l------~~~~~~~-l~~~~gl~~~l~~~-~~  110 (455)
                      ++||+|||||++|+++|+.|+++|++|+|||+.......+.    +..+      .+...++ ...+ .+++++.+. +.
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~l~~~~~~   81 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQ-ELWYELEKETHH   81 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSCSSSSSCSSEEEECSSCTTCGGGHHHHHHHH-HHHHHHHHHCSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCcchhhhhhhcCCchHHHHHHHHH-HHHHHHHHHhCC
Confidence            58999999999999999999999999999999875541111    1111      1111222 2222 445555432 11


Q ss_pred             Cc-ccccceEEeecCC--------------CCccccc---------cCCCcccc-ccccCCccccccchhhHHHHHHHHH
Q 012845          111 PV-DLWRKFIYCTSVT--------------GPILGSV---------DHMQPQDF-EKVVSPVSVAHFSQYKLNKLLLKQL  165 (455)
Q Consensus       111 ~~-~~~~~~~~~~~~~--------------~~~~~~~---------~~~~~~~~-~~~~~~~~~~~i~r~~l~~~L~~~~  165 (455)
                      .. .......+.....              |......         +....... .... ......++...+.+.|.+.+
T Consensus        82 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~  160 (389)
T 2gf3_A           82 KIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIF-EPNSGVLFSENCIRAYRELA  160 (389)
T ss_dssp             CCEECCCEEEEEETTCCHHHHHHHHHHHHTTCCCEEEETHHHHHHSTTCCCCTTEEEEE-ETTCEEEEHHHHHHHHHHHH
T ss_pred             cceeecceEEEcCCCchHHHHHHHHHHHHcCCCcEEcCHHHHHHhCCCcccCCCceEEE-eCCCcEEeHHHHHHHHHHHH
Confidence            11 0000111111100              0000000         00000000 0000 01123456678999999999


Q ss_pred             HhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch-hhhhcC
Q 012845          166 EKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST-VRKLVG  244 (455)
Q Consensus       166 ~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~-vr~~l~  244 (455)
                      ++.|+                   +++.+++|++++.+++++.+.+.   ++     ++.+|.||.|+|.+|. +.+.++
T Consensus       161 ~~~Gv-------------------~i~~~~~v~~i~~~~~~~~v~~~---~g-----~~~a~~vV~A~G~~~~~l~~~~g  213 (389)
T 2gf3_A          161 EARGA-------------------KVLTHTRVEDFDISPDSVKIETA---NG-----SYTADKLIVSMGAWNSKLLSKLN  213 (389)
T ss_dssp             HHTTC-------------------EEECSCCEEEEEECSSCEEEEET---TE-----EEEEEEEEECCGGGHHHHGGGGT
T ss_pred             HHCCC-------------------EEEcCcEEEEEEecCCeEEEEeC---CC-----EEEeCEEEEecCccHHHHhhhhc
Confidence            99887                   99999999999987777666543   33     6899999999999975 455554

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.58  E-value=2.1e-13  Score=135.39  Aligned_cols=176  Identities=14%  Similarity=0.158  Sum_probs=100.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcc----cccC-----hhHH-HHHHhhhchHHHHHhc-CC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQA----HFIN-----NRYA-LVFRKLDGLAEEIERS-QP  110 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~----~~l~-----~~~~-~~l~~~~gl~~~l~~~-~~  110 (455)
                      ..+||+|||||++|+++|+.|+++|++|+|+||.......+..    ..+.     +... ..+..+ .+++++.+. +.
T Consensus         3 ~~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~~~~~gas~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~   81 (397)
T 2oln_A            3 ESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENGGTSGAERHWRLQYTQEDLFRLTLETL-PLWRALESRCER   81 (397)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTCSSSSCCSSEEEECSCCSSHHHHHHHHHHH-HHHHHHHHHHTC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCcCeEEEeccCcchhhhHHHHHH-HHHHHHHHHhCc
Confidence            4589999999999999999999999999999998765421211    1111     1111 112223 444444321 11


Q ss_pred             CcccccceEEeecCCC----Cccc-------cccCC----Ccccc----cccc-C-------CccccccchhhHHHHHHH
Q 012845          111 PVDLWRKFIYCTSVTG----PILG-------SVDHM----QPQDF----EKVV-S-------PVSVAHFSQYKLNKLLLK  163 (455)
Q Consensus       111 ~~~~~~~~~~~~~~~~----~~~~-------~~~~~----~~~~~----~~~~-~-------~~~~~~i~r~~l~~~L~~  163 (455)
                      ................    ..+.       .....    ...+.    .... .       ......++...+.+.|.+
T Consensus        82 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~  161 (397)
T 2oln_A           82 RLIHEIGSLWFGDTDVVTNEGQISGTAAMMDKLSVRYEWLKATDIERRFGFRGLPRDYEGFLQPDGGTIDVRGTLAALFT  161 (397)
T ss_dssp             CCEECCCEEEEECSSCCBTTBCHHHHHHHHHHTTCCCEEEEHHHHHHHHCCCSCCTTCEEEEETTCEEEEHHHHHHHHHH
T ss_pred             cHHHHCCcEEEcCCCccchhHHHHHHHHHHHHcCCCceecCHHHHHhhCcCccCCCceeEEEcCCCCEEcHHHHHHHHHH
Confidence            1100000011111110    0000       00000    00000    0000 0       001224556678889999


Q ss_pred             HHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc-hhhhh
Q 012845          164 QLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS-TVRKL  242 (455)
Q Consensus       164 ~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S-~vr~~  242 (455)
                      .+.+.|+                   +|+++++|++++.+++++.|.+.   ++     ++.+|.||.|+|.+| .+++.
T Consensus       162 ~a~~~Gv-------------------~i~~~~~V~~i~~~~~~v~v~t~---~g-----~i~a~~VV~A~G~~s~~l~~~  214 (397)
T 2oln_A          162 LAQAAGA-------------------TLRAGETVTELVPDADGVSVTTD---RG-----TYRAGKVVLACGPYTNDLLEP  214 (397)
T ss_dssp             HHHHTTC-------------------EEEESCCEEEEEEETTEEEEEES---SC-----EEEEEEEEECCGGGHHHHHGG
T ss_pred             HHHHcCC-------------------EEECCCEEEEEEEcCCeEEEEEC---CC-----EEEcCEEEEcCCcChHHHhhh
Confidence            9988887                   99999999999987777665433   33     689999999999995 47777


Q ss_pred             cCC
Q 012845          243 VGI  245 (455)
Q Consensus       243 l~~  245 (455)
                      ++.
T Consensus       215 ~g~  217 (397)
T 2oln_A          215 LGA  217 (397)
T ss_dssp             GTC
T ss_pred             cCC
Confidence            764

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.55  E-value=9.8e-14  Score=135.88  Aligned_cols=73  Identities=11%  Similarity=0.172  Sum_probs=58.2

Q ss_pred             cccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCc-eEEEEEeccCCcceeEEEEeCE
Q 012845          150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCNI  228 (455)
Q Consensus       150 ~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~-~~v~~~~~~~g~~~~~~~~~d~  228 (455)
                      ..++...+.+.|.+.+++.|+                   +|+++++|+++..++++ +.|.+.   +|+  ..++.+|.
T Consensus       145 ~~~~~~~~~~~l~~~~~~~Gv-------------------~i~~~~~v~~i~~~~~~~~~v~~~---~g~--~~~~~a~~  200 (369)
T 3dme_A          145 GIVDSHALMLAYQGDAESDGA-------------------QLVFHTPLIAGRVRPEGGFELDFG---GAE--PMTLSCRV  200 (369)
T ss_dssp             EEECHHHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEECTTSSEEEEEC---TTS--CEEEEEEE
T ss_pred             EEECHHHHHHHHHHHHHHCCC-------------------EEECCCEEEEEEEcCCceEEEEEC---CCc--eeEEEeCE
Confidence            346778899999999999987                   99999999999987665 666554   553  23789999


Q ss_pred             EEeecCCCch-hhhhc-CCC
Q 012845          229 LIGTDGAGST-VRKLV-GID  246 (455)
Q Consensus       229 vV~AdG~~S~-vr~~l-~~~  246 (455)
                      ||.|+|.+|. +.+.+ |.+
T Consensus       201 VV~A~G~~s~~l~~~~~g~~  220 (369)
T 3dme_A          201 LINAAGLHAPGLARRIEGIP  220 (369)
T ss_dssp             EEECCGGGHHHHHHTEETSC
T ss_pred             EEECCCcchHHHHHHhcCCC
Confidence            9999999994 67777 654

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.54  E-value=3.8e-13  Score=132.44  Aligned_cols=70  Identities=20%  Similarity=0.358  Sum_probs=56.9

Q ss_pred             cccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEE
Q 012845          150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNIL  229 (455)
Q Consensus       150 ~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~v  229 (455)
                      ..++...+...|.+.+++.|+                   +|+++++|+++..+++++.|.+.   +|     ++.+|.|
T Consensus       149 ~~~~~~~~~~~l~~~a~~~Gv-------------------~i~~~~~V~~i~~~~~~~~V~t~---~g-----~i~a~~V  201 (381)
T 3nyc_A          149 ADIDTDALHQGYLRGIRRNQG-------------------QVLCNHEALEIRRVDGAWEVRCD---AG-----SYRAAVL  201 (381)
T ss_dssp             EEECHHHHHHHHHHHHHHTTC-------------------EEESSCCCCEEEEETTEEEEECS---SE-----EEEESEE
T ss_pred             ceECHHHHHHHHHHHHHHCCC-------------------EEEcCCEEEEEEEeCCeEEEEeC---CC-----EEEcCEE
Confidence            446778899999999999887                   99999999999988877666543   44     6899999


Q ss_pred             EeecCCCch-hhhhcCCC
Q 012845          230 IGTDGAGST-VRKLVGID  246 (455)
Q Consensus       230 V~AdG~~S~-vr~~l~~~  246 (455)
                      |.|+|.+|. +.+.++..
T Consensus       202 V~A~G~~s~~l~~~~g~~  219 (381)
T 3nyc_A          202 VNAAGAWCDAIAGLAGVR  219 (381)
T ss_dssp             EECCGGGHHHHHHHHTCC
T ss_pred             EECCChhHHHHHHHhCCC
Confidence            999999984 66766643

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.52  E-value=8.4e-14  Score=138.81  Aligned_cols=143  Identities=17%  Similarity=0.218  Sum_probs=91.2

Q ss_pred             cCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC----ccc-c-----cC---------hhHHHHHHhhh
Q 012845           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP----QAH-F-----IN---------NRYALVFRKLD   99 (455)
Q Consensus        39 ~~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~----~~~-~-----l~---------~~~~~~l~~~~   99 (455)
                      ||+.++||+|||||++|+++|+.|+++|++|+||||.+.+..+.    .+. .     ..         ......+..+ 
T Consensus        23 M~~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~-  101 (417)
T 3v76_A           23 MVAEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARY-  101 (417)
T ss_dssp             -----CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHS-
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhc-
Confidence            44667999999999999999999999999999999998753211    000 0     00         0011222222 


Q ss_pred             chH---HHHHhcCCCcccccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCC
Q 012845          100 GLA---EEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSE  176 (455)
Q Consensus       100 gl~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~  176 (455)
                      ...   +.+...+.+..        ....+                    ..........+.+.|.+.+++.|+      
T Consensus       102 ~~~~~~~~~~~~Gi~~~--------~~~~g--------------------~~~~~~~~~~l~~~L~~~l~~~Gv------  147 (417)
T 3v76_A          102 RPQDFVALVERHGIGWH--------EKTLG--------------------QLFCDHSAKDIIRMLMAEMKEAGV------  147 (417)
T ss_dssp             CHHHHHHHHHHTTCCEE--------ECSTT--------------------EEEESSCHHHHHHHHHHHHHHHTC------
T ss_pred             CHHHHHHHHHHcCCCcE--------EeeCC--------------------EEeeCCCHHHHHHHHHHHHHHCCC------
Confidence            111   11122221110        00000                    001123567899999999999887      


Q ss_pred             CcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          177 GTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       177 ~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                                   +|+++++|+++..+++++.|.+.   +|     ++.+|.||.|+|.+|
T Consensus       148 -------------~i~~~~~V~~i~~~~~~~~V~~~---~g-----~i~ad~VIlAtG~~S  187 (417)
T 3v76_A          148 -------------QLRLETSIGEVERTASGFRVTTS---AG-----TVDAASLVVASGGKS  187 (417)
T ss_dssp             -------------EEECSCCEEEEEEETTEEEEEET---TE-----EEEESEEEECCCCSS
T ss_pred             -------------EEEECCEEEEEEEeCCEEEEEEC---Cc-----EEEeeEEEECCCCcc
Confidence                         99999999999988877766654   44     689999999999999

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.46  E-value=2.5e-12  Score=112.95  Aligned_cols=117  Identities=23%  Similarity=0.310  Sum_probs=86.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEeec
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~~  123 (455)
                      +||+|||||++|+.+|..|++.|.+|+|+|+.+......               . .           ...+        
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~---------------~-~-----------~~~~--------   46 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGV---------------S-R-----------VPNY--------   46 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTC---------------S-C-----------CCCS--------
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCc---------------h-h-----------hhcc--------
Confidence            689999999999999999999999999999986321000               0 0           0000        


Q ss_pred             CCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeec
Q 012845          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (455)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~  203 (455)
                       .+             +     +   ..+....+.+.+.+.+++.|+                   +++.+ +|++++.+
T Consensus        47 -~~-------------~-----~---~~~~~~~~~~~l~~~~~~~gv-------------------~v~~~-~v~~i~~~   84 (180)
T 2ywl_A           47 -PG-------------L-----L---DEPSGEELLRRLEAHARRYGA-------------------EVRPG-VVKGVRDM   84 (180)
T ss_dssp             -TT-------------C-----T---TCCCHHHHHHHHHHHHHHTTC-------------------EEEEC-CCCEEEEC
T ss_pred             -CC-------------C-----c---CCCCHHHHHHHHHHHHHHcCC-------------------EEEeC-EEEEEEEc
Confidence             00             0     0   123456888899999999887                   89999 99999887


Q ss_pred             CCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCC
Q 012845          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGI  245 (455)
Q Consensus       204 ~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~  245 (455)
                      ++.+.+.+.   +|     ++.+|.||.|+|..+.+++.++.
T Consensus        85 ~~~~~v~~~---~g-----~i~ad~vI~A~G~~~~~~~~~g~  118 (180)
T 2ywl_A           85 GGVFEVETE---EG-----VEKAERLLLCTHKDPTLPSLLGL  118 (180)
T ss_dssp             SSSEEEECS---SC-----EEEEEEEEECCTTCCHHHHHHTC
T ss_pred             CCEEEEEEC---CC-----EEEECEEEECCCCCCCccccCCC
Confidence            777666544   44     67999999999999988777764

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.46  E-value=5e-14  Score=142.21  Aligned_cols=163  Identities=18%  Similarity=0.248  Sum_probs=94.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHH----------HHHHhhh---ch-HHHHH
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYA----------LVFRKLD---GL-AEEIE  106 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~----------~~l~~~~---gl-~~~l~  106 (455)
                      .+++||+|||||++|+++|+.|+++|.+|+||||.+.+..   ...++..+.          .++..++   .+ ...+.
T Consensus        24 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~---~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (447)
T 2i0z_A           24 AMHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGR---KLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFS  100 (447)
T ss_dssp             -CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCH---HHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHH
T ss_pred             cCCCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCc---eeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHH
Confidence            3468999999999999999999999999999999876531   111111000          1111110   00 00000


Q ss_pred             hcCCCcccccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCccccccccc
Q 012845          107 RSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLL  186 (455)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~  186 (455)
                      .... ......+    ...|..+..      ....... +   .......+.+.|.+.+++.|+                
T Consensus       101 ~~~~-~~~~~~~----~~~G~~~~~------~~~g~~~-p---~~~~~~~l~~~L~~~~~~~GV----------------  149 (447)
T 2i0z_A          101 IFNN-EDIITFF----ENLGVKLKE------EDHGRMF-P---VSNKAQSVVDALLTRLKDLGV----------------  149 (447)
T ss_dssp             HSCH-HHHHHHH----HHTTCCEEE------CGGGEEE-E---TTCCHHHHHHHHHHHHHHTTC----------------
T ss_pred             hcCH-HHHHHHH----HhcCCceEE------eeCCEEE-C---CCCCHHHHHHHHHHHHHHCCC----------------
Confidence            0000 0000000    000000000      0000000 0   011356788999999999886                


Q ss_pred             ccceEEeccEEEEeeecCCc-eEEEEEeccCCcceeEEEEeCEEEeecCCCc-----------hhhhhcCCCc
Q 012845          187 QGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGS-----------TVRKLVGIDL  247 (455)
Q Consensus       187 ~~~~i~~~~~v~~i~~~~~~-~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S-----------~vr~~l~~~~  247 (455)
                         +|+++++|+++..+++. +.|.+.   +|.    ++.+|.||.|+|.+|           .+++.+|...
T Consensus       150 ---~i~~~~~V~~i~~~~~~v~~V~~~---~G~----~i~Ad~VVlAtGg~s~~~~g~tG~g~~la~~~G~~~  212 (447)
T 2i0z_A          150 ---KIRTNTPVETIEYENGQTKAVILQ---TGE----VLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHTI  212 (447)
T ss_dssp             ---EEECSCCEEEEEEETTEEEEEEET---TCC----EEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCCE
T ss_pred             ---EEEeCcEEEEEEecCCcEEEEEEC---CCC----EEECCEEEECCCCCcCCCCCCCcHHHHHHHHCCCCc
Confidence               99999999999877665 445544   553    689999999999999           7888887653

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.46  E-value=1.1e-11  Score=121.76  Aligned_cols=167  Identities=14%  Similarity=0.223  Sum_probs=95.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC----cccccC------hhHHH-HHHhhhchHHHHHhcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP----QAHFIN------NRYAL-VFRKLDGLAEEIERSQPP  111 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~----~~~~l~------~~~~~-~l~~~~gl~~~l~~~~~~  111 (455)
                      ++||+|||||++|+++|+.|+++|++|+|||+.......+    .+..+.      ..... ....+ .+++++.+.+..
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~l~~~~~~   80 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHHGDTRLIRHAYGEGEKYVPLVLRAQ-MLWDELSRHNED   80 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCSSSSSSSCCSSEEEECSSCTTCGGGHHHHHHHH-HHHHHHHTTCSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCccceeeeccCCCchHHHHHHHHH-HHHHHHHHhCCC
Confidence            5799999999999999999999999999999987653211    110111      11111 12222 445555421110


Q ss_pred             cccc---cceEEeecCC-------------CCccccc---------cCC-CccccccccCCccccccchhhHHHHHHHHH
Q 012845          112 VDLW---RKFIYCTSVT-------------GPILGSV---------DHM-QPQDFEKVVSPVSVAHFSQYKLNKLLLKQL  165 (455)
Q Consensus       112 ~~~~---~~~~~~~~~~-------------~~~~~~~---------~~~-~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~  165 (455)
                      ...+   ....+.....             |......         +.. ......... ......++...+.+.|.+.+
T Consensus        81 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~-~~~~g~~~~~~l~~~l~~~~  159 (372)
T 2uzz_A           81 DPIFVRSGVINLGPADSTFLANVAHSAEQWQLNVEKLDAQGIMARWPEIRVPDNYIGLF-ETDSGFLRSELAIKTWIQLA  159 (372)
T ss_dssp             SCSEECCCEEEEEETTCHHHHHHHHHHHHTTCCEEEEEHHHHHHHCTTCCCCTTEEEEE-ESSCEEEEHHHHHHHHHHHH
T ss_pred             ccceeeeceEEEeCCCcHHHHHHHHHHHHcCCCcEecCHHHHHhhCCCccCCCCceEEE-eCCCcEEcHHHHHHHHHHHH
Confidence            0000   0011111000             0000000         000 000000000 01123456678999999999


Q ss_pred             HhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          166 EKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       166 ~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      .+.|+                   +++.+++|++++.+++++.+.+.   +|     ++.+|.||.|+|.+|.
T Consensus       160 ~~~G~-------------------~i~~~~~V~~i~~~~~~~~v~~~---~g-----~~~a~~vV~a~G~~s~  205 (372)
T 2uzz_A          160 KEAGC-------------------AQLFNCPVTAIRHDDDGVTIETA---DG-----EYQAKKAIVCAGTWVK  205 (372)
T ss_dssp             HHTTC-------------------EEECSCCEEEEEECSSSEEEEES---SC-----EEEEEEEEECCGGGGG
T ss_pred             HHCCC-------------------EEEcCCEEEEEEEcCCEEEEEEC---CC-----eEEcCEEEEcCCccHH
Confidence            99887                   99999999999987777666544   44     5899999999999884

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.44  E-value=6.1e-11  Score=121.29  Aligned_cols=74  Identities=15%  Similarity=0.054  Sum_probs=56.5

Q ss_pred             cccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEE
Q 012845          150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNIL  229 (455)
Q Consensus       150 ~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~v  229 (455)
                      ..++...+...|.+.+.+.|+                   +++.+++|+++..+++.+.|.+....+|.  ..++.+|.|
T Consensus       144 g~v~~~~l~~~l~~~a~~~Gv-------------------~i~~~~~V~~l~~~~~~~~V~~~d~~~G~--~~~i~A~~V  202 (501)
T 2qcu_A          144 CWVDDARLVLANAQMVVRKGG-------------------EVLTRTRATSARRENGLWIVEAEDIDTGK--KYSWQARGL  202 (501)
T ss_dssp             EEECHHHHHHHHHHHHHHTTC-------------------EEECSEEEEEEEEETTEEEEEEEETTTCC--EEEEEESCE
T ss_pred             CEEcHHHHHHHHHHHHHHcCC-------------------EEEcCcEEEEEEEeCCEEEEEEEECCCCC--EEEEECCEE
Confidence            346788899999999999887                   99999999999987765556654212332  346899999


Q ss_pred             EeecCCCch-hhhh-cC
Q 012845          230 IGTDGAGST-VRKL-VG  244 (455)
Q Consensus       230 V~AdG~~S~-vr~~-l~  244 (455)
                      |.|+|.+|. +++. ++
T Consensus       203 V~AtG~~s~~l~~~~l~  219 (501)
T 2qcu_A          203 VNATGPWVKQFFDDGMH  219 (501)
T ss_dssp             EECCGGGHHHHHHHHTC
T ss_pred             EECCChhHHHHHHHhcc
Confidence            999999996 5554 54

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.44  E-value=1.8e-12  Score=137.49  Aligned_cols=69  Identities=10%  Similarity=0.176  Sum_probs=55.7

Q ss_pred             cccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEE
Q 012845          150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNIL  229 (455)
Q Consensus       150 ~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~v  229 (455)
                      ..++...+...|.+.+++.|+                   +|+++++|+++..+++++.|.+.   +|.    ++.+|.|
T Consensus       412 g~v~p~~l~~aL~~~a~~~Gv-------------------~i~~~t~V~~l~~~~~~v~V~t~---~G~----~i~Ad~V  465 (676)
T 3ps9_A          412 GWLCPAELTRNVLELAQQQGL-------------------QIYYQYQLQNFSRKDDCWLLNFA---GDQ----QATHSVV  465 (676)
T ss_dssp             EEECHHHHHHHHHHHHHHTTC-------------------EEEESCCEEEEEEETTEEEEEET---TSC----EEEESEE
T ss_pred             eeeCHHHHHHHHHHHHHhCCC-------------------EEEeCCeeeEEEEeCCeEEEEEC---CCC----EEECCEE
Confidence            446678899999999999887                   99999999999988888766654   544    6899999


Q ss_pred             EeecCCCch-hhhhcC
Q 012845          230 IGTDGAGST-VRKLVG  244 (455)
Q Consensus       230 V~AdG~~S~-vr~~l~  244 (455)
                      |.|+|.+|. +.+..+
T Consensus       466 VlAtG~~s~~l~~~~~  481 (676)
T 3ps9_A          466 VLANGHQISRFSQTST  481 (676)
T ss_dssp             EECCGGGGGCSTTTTT
T ss_pred             EECCCcchhccccccC
Confidence            999999986 444333

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.43  E-value=2.3e-12  Score=136.89  Aligned_cols=69  Identities=10%  Similarity=0.064  Sum_probs=54.1

Q ss_pred             cccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEE
Q 012845          150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNIL  229 (455)
Q Consensus       150 ~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~v  229 (455)
                      ..++...+.+.|.+.+.+.|+                   +|+++++|+++..+++++.|.+.   +|.   .++.+|.|
T Consensus       407 g~v~p~~l~~aL~~~a~~~Gv-------------------~i~~~t~V~~l~~~~~~v~V~t~---~G~---~~i~Ad~V  461 (689)
T 3pvc_A          407 GWLCPSDLTHALMMLAQQNGM-------------------TCHYQHELQRLKRIDSQWQLTFG---QSQ---AAKHHATV  461 (689)
T ss_dssp             EEECHHHHHHHHHHHHHHTTC-------------------EEEESCCEEEEEECSSSEEEEEC----CC---CCEEESEE
T ss_pred             eEECHHHHHHHHHHHHHhCCC-------------------EEEeCCeEeEEEEeCCeEEEEeC---CCc---EEEECCEE
Confidence            345678899999999999887                   99999999999998888776654   442   14789999


Q ss_pred             EeecCCCch-hhhhc
Q 012845          230 IGTDGAGST-VRKLV  243 (455)
Q Consensus       230 V~AdG~~S~-vr~~l  243 (455)
                      |.|+|.+|. +...+
T Consensus       462 VlAtG~~s~~l~~~~  476 (689)
T 3pvc_A          462 ILATGHRLPEWEQTH  476 (689)
T ss_dssp             EECCGGGTTCSTTTT
T ss_pred             EECCCcchhcccccc
Confidence            999999985 33333

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.40  E-value=1.1e-10  Score=120.70  Aligned_cols=75  Identities=15%  Similarity=0.037  Sum_probs=58.4

Q ss_pred             ccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCEE
Q 012845          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNIL  229 (455)
Q Consensus       151 ~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~v  229 (455)
                      .++...|...|.+.+.+.|+                   +|+.+++|+++..+++.+. |.+....+|  ...++.+|.|
T Consensus       166 ~vd~~~l~~~L~~~a~~~G~-------------------~i~~~~~V~~l~~~~g~v~gV~~~d~~tg--~~~~i~A~~V  224 (561)
T 3da1_A          166 RTDDARLTLEIMKEAVARGA-------------------VALNYMKVESFIYDQGKVVGVVAKDRLTD--TTHTIYAKKV  224 (561)
T ss_dssp             ECCHHHHHHHHHHHHHHTTC-------------------EEEESEEEEEEEEETTEEEEEEEEETTTC--CEEEEEEEEE
T ss_pred             eEcHHHHHHHHHHHHHHcCC-------------------EEEcCCEEEEEEEcCCeEEEEEEEEcCCC--ceEEEECCEE
Confidence            56778899999999999887                   9999999999998877643 655522223  2347899999


Q ss_pred             EeecCCCc-hhhhhcCCC
Q 012845          230 IGTDGAGS-TVRKLVGID  246 (455)
Q Consensus       230 V~AdG~~S-~vr~~l~~~  246 (455)
                      |.|+|.+| .+++.++..
T Consensus       225 V~AaG~~s~~l~~~~g~~  242 (561)
T 3da1_A          225 VNAAGPWVDTLREKDRSK  242 (561)
T ss_dssp             EECCGGGHHHHHHTTTCC
T ss_pred             EECCCcchHHHHHhcCCC
Confidence            99999999 477777643

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.39  E-value=3.5e-12  Score=126.63  Aligned_cols=142  Identities=18%  Similarity=0.239  Sum_probs=88.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC----ccc------ccChh---------HHHHHHhhh--
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP----QAH------FINNR---------YALVFRKLD--   99 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~----~~~------~l~~~---------~~~~l~~~~--   99 (455)
                      |.++||+|||||++|+++|+.|+++|.+|+||||.+.+..+.    .+.      ...+.         ....+..+.  
T Consensus         2 M~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (401)
T 2gqf_A            2 SQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNW   81 (401)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHH
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHH
Confidence            457999999999999999999999999999999987652110    000      00000         001111110  


Q ss_pred             chHHHHHhcCCCcccccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcc
Q 012845          100 GLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTE  179 (455)
Q Consensus       100 gl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~  179 (455)
                      .+.+.+...+.+..        ....+               ..+ +   .. ....+.+.|.+.+++.|+         
T Consensus        82 ~~~~~~~~~Gi~~~--------~~~~g---------------~~~-p---~~-~~~~l~~~L~~~~~~~Gv---------  124 (401)
T 2gqf_A           82 DFISLVAEQGITYH--------EKELG---------------QLF-C---DE-GAEQIVEMLKSECDKYGA---------  124 (401)
T ss_dssp             HHHHHHHHTTCCEE--------ECSTT---------------EEE-E---TT-CTHHHHHHHHHHHHHHTC---------
T ss_pred             HHHHHHHhCCCceE--------ECcCC---------------EEc-c---CC-CHHHHHHHHHHHHHHCCC---------
Confidence            01111111111110        00000               000 0   01 567888899999999887         


Q ss_pred             cccccccccceEEeccEEEEeeec----CCceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          180 GLHNHLLQGREILMGHECVSVSAT----DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       180 ~~~~~~~~~~~i~~~~~v~~i~~~----~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                                +++++++|+++..+    ++.+.|.+.   ++     ++++|.||.|+|.+|
T Consensus       125 ----------~i~~~~~v~~i~~~~~g~~~~~~v~~~---~g-----~i~ad~VVlAtG~~s  168 (401)
T 2gqf_A          125 ----------KILLRSEVSQVERIQNDEKVRFVLQVN---ST-----QWQCKNLIVATGGLS  168 (401)
T ss_dssp             ----------EEECSCCEEEEEECCSCSSCCEEEEET---TE-----EEEESEEEECCCCSS
T ss_pred             ----------EEEeCCEEEEEEcccCcCCCeEEEEEC---CC-----EEECCEEEECCCCcc
Confidence                      99999999999876    555655443   33     689999999999999

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.39  E-value=1.2e-12  Score=131.68  Aligned_cols=63  Identities=10%  Similarity=0.165  Sum_probs=53.3

Q ss_pred             cccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEecc---EEEEeeecCCceE-EEEEeccCCcceeEEEE
Q 012845          150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH---ECVSVSATDQCIN-VIASFLKEGKCTERNIQ  225 (455)
Q Consensus       150 ~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~---~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~  225 (455)
                      ..++...+...|.+.+++.|+                   +|++++   +|+++..+++.+. |.+.   +|.    ++.
T Consensus       156 g~~~~~~~~~~L~~~a~~~Gv-------------------~i~~~t~~~~V~~i~~~~~~v~gV~t~---~G~----~i~  209 (438)
T 3dje_A          156 GWAHARNALVAAAREAQRMGV-------------------KFVTGTPQGRVVTLIFENNDVKGAVTA---DGK----IWR  209 (438)
T ss_dssp             EEECHHHHHHHHHHHHHHTTC-------------------EEEESTTTTCEEEEEEETTEEEEEEET---TTE----EEE
T ss_pred             EEecHHHHHHHHHHHHHhcCC-------------------EEEeCCcCceEEEEEecCCeEEEEEEC---CCC----EEE
Confidence            455667899999999999887                   999999   9999998877776 6655   664    789


Q ss_pred             eCEEEeecCCCch
Q 012845          226 CNILIGTDGAGST  238 (455)
Q Consensus       226 ~d~vV~AdG~~S~  238 (455)
                      +|.||.|+|.+|.
T Consensus       210 Ad~VV~AtG~~s~  222 (438)
T 3dje_A          210 AERTFLCAGASAG  222 (438)
T ss_dssp             CSEEEECCGGGGG
T ss_pred             CCEEEECCCCChh
Confidence            9999999999985

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.37  E-value=4e-12  Score=130.34  Aligned_cols=68  Identities=16%  Similarity=0.166  Sum_probs=53.4

Q ss_pred             chhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCEEEe
Q 012845          153 SQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIG  231 (455)
Q Consensus       153 ~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~  231 (455)
                      ....+.+.|.+.+++.|+                   +|+++++|+++..+++.+. |.+.   +|+    ++.+|+||.
T Consensus       218 ~~~~l~~~L~~~l~~~Gv-------------------~I~~~t~V~~I~~~~~~v~gV~l~---~G~----~i~Ad~VVl  271 (549)
T 3nlc_A          218 KLVTMIEKMRATIIELGG-------------------EIRFSTRVDDLHMEDGQITGVTLS---NGE----EIKSRHVVL  271 (549)
T ss_dssp             HHHHHHHHHHHHHHHTTC-------------------EEESSCCEEEEEESSSBEEEEEET---TSC----EEECSCEEE
T ss_pred             hHHHHHHHHHHHHHhcCC-------------------EEEeCCEEEEEEEeCCEEEEEEEC---CCC----EEECCEEEE
Confidence            456788889999998887                   9999999999998777654 5554   664    789999999


Q ss_pred             ecCCCch----hhhhcCCC
Q 012845          232 TDGAGST----VRKLVGID  246 (455)
Q Consensus       232 AdG~~S~----vr~~l~~~  246 (455)
                      |+|.+|.    ..+.+|..
T Consensus       272 A~G~~s~~~~~~l~~~Gi~  290 (549)
T 3nlc_A          272 AVGHSARDTFEMLHERGVY  290 (549)
T ss_dssp             CCCTTCHHHHHHHHHTTCC
T ss_pred             CCCCChhhHHHHHHHcCCC
Confidence            9999994    33444544

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.34  E-value=6.4e-11  Score=119.86  Aligned_cols=62  Identities=19%  Similarity=0.259  Sum_probs=45.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCC------CCEEEEcCCCCCCCCCcc---------------cccChhHHHHHHhhhc
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLG------IKCSVLEKNKAFSTHPQA---------------HFINNRYALVFRKLDG  100 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g------~~V~l~Er~~~~~~~~~~---------------~~l~~~~~~~l~~~~g  100 (455)
                      +.+||+|||||++||++|+.|+++|      ++|+|||+.+.+..+...               ....+...++++++ |
T Consensus         4 ~~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~l-g   82 (470)
T 3i6d_A            4 GKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGPDSFLERKKSAPQLVKDL-G   82 (470)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCEECCTTCCEESSCCCEETTCTHHHHHHHHT-T
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEEeccCCEEeccChhhhhhCCHHHHHHHHHc-C
Confidence            3589999999999999999999999      999999998766422111               11235566777777 6


Q ss_pred             hHHH
Q 012845          101 LAEE  104 (455)
Q Consensus       101 l~~~  104 (455)
                      +.+.
T Consensus        83 l~~~   86 (470)
T 3i6d_A           83 LEHL   86 (470)
T ss_dssp             CCTT
T ss_pred             Ccce
Confidence            6543

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.33  E-value=1.1e-11  Score=117.09  Aligned_cols=143  Identities=13%  Similarity=0.215  Sum_probs=90.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCCCCC--Cccccc-----ChhHHHHHHhhhchHHHHHhcCCCcc
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAFSTH--PQAHFI-----NNRYALVFRKLDGLAEEIERSQPPVD  113 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~-g~~V~l~Er~~~~~~~--~~~~~l-----~~~~~~~l~~~~gl~~~l~~~~~~~~  113 (455)
                      .++||+|||||++|+++|+.|+++ |.+|+|+||.+.+...  .++..+     .....++++++ |+         +..
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~-G~---------~~~  107 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEI-GV---------AYD  107 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHH-TC---------CCE
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHc-CC---------Ccc
Confidence            468999999999999999999997 9999999998765321  111111     11122222222 21         110


Q ss_pred             cccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHh-cccccccCCCcccccccccccceEE
Q 012845          114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREIL  192 (455)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~i~  192 (455)
                      .          .+                    ..........+...|.+.+.+ .|+                   +++
T Consensus       108 ~----------~~--------------------~~~~~~~~~~~~~~l~~~~~~~~gv-------------------~i~  138 (284)
T 1rp0_A          108 E----------QD--------------------TYVVVKHAALFTSTIMSKLLARPNV-------------------KLF  138 (284)
T ss_dssp             E----------CS--------------------SEEEESCHHHHHHHHHHHHHTSTTE-------------------EEE
T ss_pred             c----------CC--------------------CEEEecCHHHHHHHHHHHHHhcCCC-------------------EEE
Confidence            0          00                    000112456777888888766 565                   999


Q ss_pred             eccEEEEeeecCCceE-EEEEec----c--CC-cceeEEEEeCEEEeecCCCchhhhhc
Q 012845          193 MGHECVSVSATDQCIN-VIASFL----K--EG-KCTERNIQCNILIGTDGAGSTVRKLV  243 (455)
Q Consensus       193 ~~~~v~~i~~~~~~~~-v~~~~~----~--~g-~~~~~~~~~d~vV~AdG~~S~vr~~l  243 (455)
                      ++++|+++..+++.+. +.+...    +  ++ .+...++.+|.||.|+|.+|.++...
T Consensus       139 ~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~  197 (284)
T 1rp0_A          139 NAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATG  197 (284)
T ss_dssp             ETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHH
T ss_pred             cCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHH
Confidence            9999999988766543 333310    0  11 11224789999999999999887654

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.33  E-value=3.3e-12  Score=127.18  Aligned_cols=175  Identities=14%  Similarity=0.129  Sum_probs=94.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCCCC--ccc-cc-ChhH------HHHHHhhhchHHHHHhc-
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTHP--QAH-FI-NNRY------ALVFRKLDGLAEEIERS-  108 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~~~~~--~~~-~l-~~~~------~~~l~~~~gl~~~l~~~-  108 (455)
                      ..+||+|||||++|+++|+.|+++  |++|+|||+........  .+. .+ .+..      ......+ .++.+.... 
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~~s~~~~g~~i~~~~~~~~~~~~l~~~~~-~~~~~~~~~~  113 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPAGQEAQAEWTR-EQLLGALGSG  113 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCTTSHHHHCCCEECGGGCCTTCHHHHHHHH-HHHHTGGGSS
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcchhccCCcceeecccCCchHHHHHHHHH-HHHHHHhCCC
Confidence            468999999999999999999999  99999999986543221  111 23 2211      1111112 222220000 


Q ss_pred             -CCCcccccceEEeec--CCCCccccccCCC-----------ccccccccCCccccccchhhHHHHHHHHHHhccccccc
Q 012845          109 -QPPVDLWRKFIYCTS--VTGPILGSVDHMQ-----------PQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICT  174 (455)
Q Consensus       109 -~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~  174 (455)
                       ...............  ..| .+...+...           ........ ......++...+...|.+.+.+.|+    
T Consensus       114 ~~~~~~~~g~l~~~~~~~~~g-~l~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~g~v~~~~l~~~L~~~~~~~Gv----  187 (405)
T 3c4n_A          114 KTLEVEDRPLLHLLPAGEGSG-LTPTLDALADFPEALALLDPARLPVARV-DPRALTYRPGSLALLAAQQAIGQGA----  187 (405)
T ss_dssp             CCCCEEECCEEEEESSCCSSS-CEEHHHHTTTCHHHHTTSCTTTSCEEEE-ETTCEEECHHHHHHHHHHHHHTTTC----
T ss_pred             CCCcEEeeCeEEehhhHhHCC-CCCHHHHHHhCCCccccccCCcceEEEE-cCCCEEEcHHHHHHHHHHHHHHCCC----
Confidence             000000000000000  001 000000000           00000000 1113456778899999999999887    


Q ss_pred             CCCcccccccccccceEEeccEEE---------EeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc-hhhh-hc
Q 012845          175 SEGTEGLHNHLLQGREILMGHECV---------SVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS-TVRK-LV  243 (455)
Q Consensus       175 ~~~~~~~~~~~~~~~~i~~~~~v~---------~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S-~vr~-~l  243 (455)
                                     +++++++|+         ++..+++.+.|.+.   ++     ++.+|.||.|+|.+| .+++ .+
T Consensus       188 ---------------~i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~---~g-----~i~a~~VV~A~G~~s~~l~~~~~  244 (405)
T 3c4n_A          188 ---------------GLLLNTRAELVPGGVRLHRLTVTNTHQIVVHE---TR-----QIRAGVIIVAAGAAGPALVEQGL  244 (405)
T ss_dssp             ---------------EEECSCEEEEETTEEEEECBCC-------CBC---CE-----EEEEEEEEECCGGGHHHHHHHHH
T ss_pred             ---------------EEEcCCEEEeccccccccceEeeCCeEEEEEC---Cc-----EEECCEEEECCCccHHHHHHHhc
Confidence                           899999999         88876666544322   33     689999999999999 5777 77


Q ss_pred             CCC
Q 012845          244 GID  246 (455)
Q Consensus       244 ~~~  246 (455)
                      +..
T Consensus       245 g~~  247 (405)
T 3c4n_A          245 GLH  247 (405)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            654

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.31  E-value=1.3e-10  Score=117.14  Aligned_cols=70  Identities=19%  Similarity=0.279  Sum_probs=53.9

Q ss_pred             cccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee---------------cCCce-EEEEEe
Q 012845          150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA---------------TDQCI-NVIASF  213 (455)
Q Consensus       150 ~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~---------------~~~~~-~v~~~~  213 (455)
                      ..++...+.+.|.+.+.+.|+                   +|+.+++|+++..               +++.+ .|.+. 
T Consensus       176 ~~~~~~~l~~~L~~~~~~~Gv-------------------~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~-  235 (448)
T 3axb_A          176 GFLDAEKVVDYYYRRASGAGV-------------------EFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLS-  235 (448)
T ss_dssp             EECCHHHHHHHHHHHHHHTTC-------------------EEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEET-
T ss_pred             eEEcHHHHHHHHHHHHHhCCC-------------------EEEcCCeEEEEEecccccccccccccccCCCceEEEEeC-
Confidence            446677899999999999887                   9999999999987               44443 24433 


Q ss_pred             ccCCcceeEEE--EeCEEEeecCCCch-hhhhcCCC
Q 012845          214 LKEGKCTERNI--QCNILIGTDGAGST-VRKLVGID  246 (455)
Q Consensus       214 ~~~g~~~~~~~--~~d~vV~AdG~~S~-vr~~l~~~  246 (455)
                        +|     ++  .+|.||.|+|.+|. +.+.++..
T Consensus       236 --~g-----~i~~~Ad~VV~AtG~~s~~l~~~~g~~  264 (448)
T 3axb_A          236 --DG-----TRVEVGEKLVVAAGVWSNRLLNPLGID  264 (448)
T ss_dssp             --TS-----CEEEEEEEEEECCGGGHHHHHGGGTCC
T ss_pred             --CC-----EEeecCCEEEECCCcCHHHHHHHcCCC
Confidence              44     56  89999999999987 67776643

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=99.31  E-value=2.6e-11  Score=116.22  Aligned_cols=143  Identities=17%  Similarity=0.284  Sum_probs=89.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCCCCc-------ccccChhHHHHHHhhhchHHHHHhcCCCc
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTHPQ-------AHFINNRYALVFRKLDGLAEEIERSQPPV  112 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~~~~~~-------~~~l~~~~~~~l~~~~gl~~~l~~~~~~~  112 (455)
                      ..+||+|||||++|+++|+.|+++  |++|+|||+.+.+.....       ...+.+....+|+.+ |+         +.
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~-Gv---------~~  147 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEV-GV---------PY  147 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHH-TC---------CC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHc-CC---------cc
Confidence            468999999999999999999997  999999999876531110       011112233333333 22         11


Q ss_pred             ccccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhc-ccccccCCCcccccccccccceE
Q 012845          113 DLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREI  191 (455)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i  191 (455)
                      ..          .+..                    ........+.+.|.+.+.+. |+                   ++
T Consensus       148 ~~----------~G~~--------------------~~~~~~~d~~~~L~~~a~~~~gV-------------------~i  178 (344)
T 3jsk_A          148 ED----------EGDY--------------------VVVKHAALFTSTVLSKVLQRPNV-------------------KL  178 (344)
T ss_dssp             EE----------CSSE--------------------EEESCHHHHHHHHHHHHHTCTTE-------------------EE
T ss_pred             cc----------cCCe--------------------EEEecHHHHHHHHHHHHHhCCCC-------------------EE
Confidence            00          0000                    01112456778888888874 65                   99


Q ss_pred             EeccEEEEeeecCC-------------------ceE-EEEEec---cCCcc----eeEEEEeCEEEeecCCCchhhhhc
Q 012845          192 LMGHECVSVSATDQ-------------------CIN-VIASFL---KEGKC----TERNIQCNILIGTDGAGSTVRKLV  243 (455)
Q Consensus       192 ~~~~~v~~i~~~~~-------------------~~~-v~~~~~---~~g~~----~~~~~~~d~vV~AdG~~S~vr~~l  243 (455)
                      +++++|+++..+++                   .+. |.+.+.   .++..    ...++.+++||+|||..|++++.+
T Consensus       179 ~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~Ak~VV~ATG~~s~v~~~~  257 (344)
T 3jsk_A          179 FNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTINAPVIISTTGHDGPFGAFS  257 (344)
T ss_dssp             EETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEECSEEEECCCSSSSSSCHH
T ss_pred             EeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEEEcCEEEECCCCCchhhHHH
Confidence            99999999987652                   222 222211   12211    234889999999999999976554

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.30  E-value=3.7e-11  Score=120.11  Aligned_cols=36  Identities=33%  Similarity=0.504  Sum_probs=33.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      +||+|||||++||++|+.|+++|++|+|||+++.+.
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~G   36 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIG   36 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            389999999999999999999999999999987764

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.30  E-value=1.7e-11  Score=118.52  Aligned_cols=126  Identities=21%  Similarity=0.283  Sum_probs=87.8

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceE
Q 012845           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (455)
Q Consensus        40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~  119 (455)
                      |+.++||+|||||++|+++|+.|++.|++|+|||+.+...                    |.+...    .+...     
T Consensus         2 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g--------------------g~~~~~----~~~~~-----   52 (335)
T 2zbw_A            2 AADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPG--------------------GQLTAL----YPEKY-----   52 (335)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSC--------------------HHHHHT----CTTSE-----
T ss_pred             CCCcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCC--------------------Ceeecc----CCCce-----
Confidence            3457899999999999999999999999999999986542                    111000    01000     


Q ss_pred             EeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEE
Q 012845          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (455)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~  199 (455)
                               +....            .  ...+.+..+.+.|.+.+.+.++                   .++++++|+.
T Consensus        53 ---------~~~~~------------~--~~~~~~~~~~~~l~~~~~~~~~-------------------~~~~~~~v~~   90 (335)
T 2zbw_A           53 ---------IYDVA------------G--FPKVYAKDLVKGLVEQVAPFNP-------------------VYSLGERAET   90 (335)
T ss_dssp             ---------ECCST------------T--CSSEEHHHHHHHHHHHHGGGCC-------------------EEEESCCEEE
T ss_pred             ---------eeccC------------C--CCCCCHHHHHHHHHHHHHHcCC-------------------EEEeCCEEEE
Confidence                     00000            0  0123456788888888888776                   8889999999


Q ss_pred             eeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhc
Q 012845          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLV  243 (455)
Q Consensus       200 i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l  243 (455)
                      ++.+++.+.+.+.   ++.    ++.+|.||.|+|..|...+..
T Consensus        91 i~~~~~~~~v~~~---~g~----~~~~~~lv~AtG~~~~~p~~~  127 (335)
T 2zbw_A           91 LEREGDLFKVTTS---QGN----AYTAKAVIIAAGVGAFEPRRI  127 (335)
T ss_dssp             EEEETTEEEEEET---TSC----EEEEEEEEECCTTSEEEECCC
T ss_pred             EEECCCEEEEEEC---CCC----EEEeCEEEECCCCCCCCCCCC
Confidence            9887766666654   554    689999999999987554444

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.28  E-value=2.1e-11  Score=118.56  Aligned_cols=131  Identities=15%  Similarity=0.178  Sum_probs=88.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEe
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~  121 (455)
                      .++||+|||||++|+++|+.|+++|++|+|||+.+.+.    +.+..        .+|.+.     ...+.         
T Consensus         2 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g----g~~~~--------~~~~~~-----~~~~~---------   55 (357)
T 4a9w_A            2 DSVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPG----GAWQH--------AWHSLH-----LFSPA---------   55 (357)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSS----GGGGG--------SCTTCB-----CSSCG---------
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC----CcccC--------CCCCcE-----ecCch---------
Confidence            45899999999999999999999999999999987652    11000        011100     00000         


Q ss_pred             ecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEee
Q 012845          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (455)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~  201 (455)
                            ...........       ........+..+.+.|.+.+++.|+                   +++++++|++++
T Consensus        56 ------~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~-------------------~~~~~~~v~~i~  103 (357)
T 4a9w_A           56 ------GWSSIPGWPMP-------ASQGPYPARAEVLAYLAQYEQKYAL-------------------PVLRPIRVQRVS  103 (357)
T ss_dssp             ------GGSCCSSSCCC-------CCSSSSCBHHHHHHHHHHHHHHTTC-------------------CEECSCCEEEEE
T ss_pred             ------hhhhCCCCCCC-------CCccCCCCHHHHHHHHHHHHHHcCC-------------------EEEcCCEEEEEE
Confidence                  00000000000       1112234678899999999999887                   899999999999


Q ss_pred             ecCCceE-EEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          202 ATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       202 ~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      .+++.+. |.+.   ++     ++.+|.||.|+|.+|.
T Consensus       104 ~~~~~~~~v~~~---~g-----~~~~d~vV~AtG~~~~  133 (357)
T 4a9w_A          104 HFGERLRVVARD---GR-----QWLARAVISATGTWGE  133 (357)
T ss_dssp             EETTEEEEEETT---SC-----EEEEEEEEECCCSGGG
T ss_pred             ECCCcEEEEEeC---CC-----EEEeCEEEECCCCCCC
Confidence            8888776 6543   44     6899999999998773

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.27  E-value=5.8e-11  Score=123.27  Aligned_cols=161  Identities=16%  Similarity=0.169  Sum_probs=94.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC--cccccChhHHHHHHhhhch-----------------
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP--QAHFINNRYALVFRKLDGL-----------------  101 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~--~~~~l~~~~~~~l~~~~gl-----------------  101 (455)
                      ..++||+|||||++|+++|+.|+++|.+|+||||.+.+....  .+.++........+.+ |+                 
T Consensus       119 ~~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~-g~~ds~~~~~~~~~~~~~~  197 (566)
T 1qo8_A          119 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAH-GVEDKVEWFIEDAMKGGRQ  197 (566)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHT-TCCCCHHHHHHHHHHHTTT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHh-CCCCCHHHHHHHHHHhcCC
Confidence            467899999999999999999999999999999998764211  1111211111111111 11                 


Q ss_pred             -----------------HHHHHhcCCCcccccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHH
Q 012845          102 -----------------AEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQ  164 (455)
Q Consensus       102 -----------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~  164 (455)
                                       .+.+.+.+.+...   .   ....+..           +.....+ ....++...+.+.|.+.
T Consensus       198 ~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~---~---~~~~g~~-----------~~r~~~~-~~~~~~~~~l~~~L~~~  259 (566)
T 1qo8_A          198 QNDIKLVTILAEQSADGVQWLESLGANLDD---L---KRSGGAR-----------VDRTHRP-HGGKSSGPEIIDTLRKA  259 (566)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHTTCCCCE---E---ECCTTCS-----------SCCEEEC-SSSSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhccHHHHHHHHhcCCcccc---c---cccCCCC-----------CCceeec-CCCCCCHHHHHHHHHHH
Confidence                             1111111111100   0   0000000           0000000 01124467899999999


Q ss_pred             HHhcccccccCCCcccccccccccceEEeccEEEEeeecC-CceE-EEEEeccCCcceeEEEEeCEEEeecCCCchhhhh
Q 012845          165 LEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD-QCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKL  242 (455)
Q Consensus       165 ~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~-~~~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~  242 (455)
                      +.+.|+                   +|+++++|+++..++ +.+. |.+.. .+|  ...++.+|.||.|+|.+|..++.
T Consensus       260 ~~~~gv-------------------~i~~~~~v~~l~~~~~g~v~Gv~~~~-~~g--~~~~i~A~~VVlAtGg~s~~~~~  317 (566)
T 1qo8_A          260 AKEQGI-------------------DTRLNSRVVKLVVNDDHSVVGAVVHG-KHT--GYYMIGAKSVVLATGGYGMNKEM  317 (566)
T ss_dssp             HHHTTC-------------------CEECSEEEEEEEECTTSBEEEEEEEE-TTT--EEEEEEEEEEEECCCCCTTCHHH
T ss_pred             HHhcCC-------------------EEEeCCEEEEEEECCCCcEEEEEEEe-CCC--cEEEEEcCEEEEecCCcccCHHH
Confidence            999887                   999999999998876 5543 44441 133  23468999999999999976443

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.27  E-value=1.7e-11  Score=112.29  Aligned_cols=130  Identities=18%  Similarity=0.168  Sum_probs=86.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEe
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~  121 (455)
                      +++||+|||||++|+.+|+.|++.|.+|+|+|+.....    +..+.+.       ++++.                   
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~----G~~~~~~-------~~~~~-------------------   51 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAV----MMPFLPP-------KPPFP-------------------   51 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGT----TCCSSCC-------CSCCC-------------------
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcC----CcccCcc-------ccccc-------------------
Confidence            46899999999999999999999999999999974211    0111110       00000                   


Q ss_pred             ecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhc-ccccccCCCcccccccccccceEEeccEEEEe
Q 012845          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                         .+.....++   + .    ..+      ++..+.+.|.+.+++. |+                   +++ +++|+++
T Consensus        52 ---~~~~~~~~~---d-~----~g~------~~~~~~~~l~~~~~~~~gv-------------------~i~-~~~v~~i   94 (232)
T 2cul_A           52 ---PGSLLERAY---D-P----KDE------RVWAFHARAKYLLEGLRPL-------------------HLF-QATATGL   94 (232)
T ss_dssp             ---TTCHHHHHC---C-T----TCC------CHHHHHHHHHHHHHTCTTE-------------------EEE-ECCEEEE
T ss_pred             ---hhhHHhhhc---c-C----CCC------CHHHHHHHHHHHHHcCCCc-------------------EEE-EeEEEEE
Confidence               000000000   0 0    001      5778999999999886 65                   777 6799999


Q ss_pred             eecCCceE-EEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCC
Q 012845          201 SATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGI  245 (455)
Q Consensus       201 ~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~  245 (455)
                      ..+++.+. +.+.   +|.    ++.+|.||.|+|.+|..+..+|.
T Consensus        95 ~~~~~~v~~v~~~---~g~----~i~a~~VV~A~G~~s~~~~~~G~  133 (232)
T 2cul_A           95 LLEGNRVVGVRTW---EGP----PARGEKVVLAVGSFLGARLFLGG  133 (232)
T ss_dssp             EEETTEEEEEEET---TSC----CEECSEEEECCTTCSSCEEEETT
T ss_pred             EEeCCEEEEEEEC---CCC----EEECCEEEECCCCChhhceecCC
Confidence            88766643 4443   554    68999999999999987776653

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=99.25  E-value=4e-10  Score=110.25  Aligned_cols=39  Identities=21%  Similarity=0.449  Sum_probs=35.2

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      |.+++||+|||||++|+++|+.|+++|++|+|+||....
T Consensus         3 m~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~   41 (363)
T 1c0p_A            3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPE   41 (363)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCC
Confidence            456789999999999999999999999999999998643

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.25  E-value=1.8e-10  Score=119.71  Aligned_cols=159  Identities=15%  Similarity=0.172  Sum_probs=92.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC--cccccChhHHHHHHhhhch-----------------
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP--QAHFINNRYALVFRKLDGL-----------------  101 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~--~~~~l~~~~~~~l~~~~gl-----------------  101 (455)
                      ..++||+|||||++|+++|+.|+++|.+|+||||.+......  .+.++........+++ |+                 
T Consensus       124 ~~~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~-g~~ds~~~~~~~~~~~g~~  202 (571)
T 1y0p_A          124 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAK-KITDSPELMFEDTMKGGQN  202 (571)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHT-TCCCCHHHHHHHHHHHTTT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHh-CCCCCHHHHHHHHHHhcCC
Confidence            447899999999999999999999999999999998764211  1111110000111111 11                 


Q ss_pred             -----------------HHHHHhcCCCcccccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHH
Q 012845          102 -----------------AEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQ  164 (455)
Q Consensus       102 -----------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~  164 (455)
                                       .+.+.+.+.+..   ..   ....+..           +.....+. ........+.+.|.+.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~---~~---~~~~g~~-----------~~r~~~~~-~g~~~g~~l~~~L~~~  264 (571)
T 1y0p_A          203 INDPALVKVLSSHSKDSVDWMTAMGADLT---DV---GMMGGAS-----------VNRAHRPT-GGAGVGAHVVQVLYDN  264 (571)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHTTCCCC---EE---ECCTTCS-----------SCCEEEST-TTCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHccHHHHHHHHhcCCCCc---cC---cccCCcC-----------CCeeEecC-CCCCCHHHHHHHHHHH
Confidence                             011111111110   00   0000000           00000000 0113456789999999


Q ss_pred             HHhcccccccCCCcccccccccccceEEeccEEEEeeecC-CceE-EEEEeccCCcceeEEEEeCEEEeecCCCchhh
Q 012845          165 LEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD-QCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVR  240 (455)
Q Consensus       165 ~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~-~~~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr  240 (455)
                      +++.|+                   +|+++++|+++..++ +.+. |.+.. .+|  ...++.+|.||.|+|.+|..+
T Consensus       265 ~~~~gv-------------------~i~~~~~v~~l~~~~~g~v~Gv~~~~-~~g--~~~~i~a~~VVlAtGg~~~n~  320 (571)
T 1y0p_A          265 AVKRNI-------------------DLRMNTRGIEVLKDDKGTVKGILVKG-MYK--GYYWVKADAVILATGGFAKNN  320 (571)
T ss_dssp             HHHTTC-------------------EEESSEEEEEEEECTTSCEEEEEEEE-TTT--EEEEEECSEEEECCCCCTTCH
T ss_pred             HHhcCC-------------------EEEeCCEeeEeEEcCCCeEEEEEEEe-CCC--cEEEEECCeEEEeCCCcccCH
Confidence            999887                   999999999998866 5443 44441 123  234789999999999988643

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.25  E-value=3.3e-11  Score=117.82  Aligned_cols=125  Identities=16%  Similarity=0.296  Sum_probs=87.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      +..+||+|||||++|+++|+.|++.|++|+|||+.+.+.                    |.+..+    .+...      
T Consensus        12 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g--------------------g~~~~~----~~~~~------   61 (360)
T 3ab1_A           12 HDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLG--------------------GQLAAL----YPEKH------   61 (360)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC--------------------HHHHHT----CTTSE------
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCC--------------------Cccccc----CCCcc------
Confidence            456899999999999999999999999999999986542                    111000    01000      


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                              ....             + ....+.+..+.+.|.+.+.+.++                   .++++++|+.+
T Consensus        62 --------~~~~-------------~-~~~~~~~~~~~~~l~~~~~~~~~-------------------~~~~~~~v~~i  100 (360)
T 3ab1_A           62 --------IYDV-------------A-GFPEVPAIDLVESLWAQAERYNP-------------------DVVLNETVTKY  100 (360)
T ss_dssp             --------ECCS-------------T-TCSSEEHHHHHHHHHHHHHTTCC-------------------EEECSCCEEEE
T ss_pred             --------cccC-------------C-CCCCCCHHHHHHHHHHHHHHhCC-------------------EEEcCCEEEEE
Confidence                    0000             0 00124567788888888888776                   88999999999


Q ss_pred             eecCC-ceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhc
Q 012845          201 SATDQ-CINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLV  243 (455)
Q Consensus       201 ~~~~~-~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l  243 (455)
                      +..++ .+.+.+.   +|.    .+.+|.||.|+|..|...+.+
T Consensus       101 ~~~~~~~~~v~~~---~g~----~~~~~~li~AtG~~~~~~~~~  137 (360)
T 3ab1_A          101 TKLDDGTFETRTN---TGN----VYRSRAVLIAAGLGAFEPRKL  137 (360)
T ss_dssp             EECTTSCEEEEET---TSC----EEEEEEEEECCTTCSCCBCCC
T ss_pred             EECCCceEEEEEC---CCc----EEEeeEEEEccCCCcCCCCCC
Confidence            88655 5666654   554    789999999999987555443

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.25  E-value=4e-11  Score=116.43  Aligned_cols=35  Identities=34%  Similarity=0.415  Sum_probs=32.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHh---CCCCEEEEcCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTK---LGIKCSVLEKNKAF   78 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~---~g~~V~l~Er~~~~   78 (455)
                      +||+|||||++|+++|+.|++   .|++|+||||.+.+
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~   39 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDS   39 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCC
Confidence            489999999999999999999   99999999998654

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.24  E-value=6.8e-11  Score=122.32  Aligned_cols=153  Identities=15%  Similarity=0.192  Sum_probs=92.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC-CCCCCCcccc---cCh-hHHHHHHhhhchHHHHHhcCCCccccc
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK-AFSTHPQAHF---INN-RYALVFRKLDGLAEEIERSQPPVDLWR  116 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~-~~~~~~~~~~---l~~-~~~~~l~~~~gl~~~l~~~~~~~~~~~  116 (455)
                      .++||+|||||+||+.+|+.|++.|.+|+|+|++. .....+|...   +.. ...+.++.+.+......+..     ..
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~-----gi  101 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQA-----GI  101 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHH-----EE
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhc-----cc
Confidence            46999999999999999999999999999999974 2332222211   111 12222333322222111100     00


Q ss_pred             ceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHh-cccccccCCCcccccccccccceEEecc
Q 012845          117 KFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILMGH  195 (455)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~i~~~~  195 (455)
                      .+.......+...                ......+++..+.+.|.+.+++ .|+                   +| +++
T Consensus       102 ~f~~l~~~kgpav----------------~~~r~~~Dr~~~~~~L~e~Le~~~GV-------------------~I-~~~  145 (651)
T 3ces_A          102 QFRILNASKGPAV----------------RATRAQADRVLYRQAVRTALENQPNL-------------------MI-FQQ  145 (651)
T ss_dssp             EEEEESTTSCGGG----------------CEEEEEECHHHHHHHHHHHHHTCTTE-------------------EE-EEC
T ss_pred             chhhhhcccCccc----------------ccchhhCCHHHHHHHHHHHHHhCCCC-------------------EE-EEE
Confidence            0110000000000                0011356788899999999987 565                   77 678


Q ss_pred             EEEEeeecCCceE-EEEEeccCCcceeEEEEeCEEEeecCCCchhhhh
Q 012845          196 ECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKL  242 (455)
Q Consensus       196 ~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~  242 (455)
                      +|+.+..+++.+. |.+.   +|.    .+.+|.||.|+|.+|..+..
T Consensus       146 ~V~~L~~e~g~V~GV~t~---dG~----~I~Ad~VVLATGt~s~~~~i  186 (651)
T 3ces_A          146 AVEDLIVENDRVVGAVTQ---MGL----KFRAKAVVLTVGTFLDGKIH  186 (651)
T ss_dssp             CEEEEEESSSBEEEEEET---TSE----EEEEEEEEECCSTTTCCEEE
T ss_pred             EEEEEEecCCEEEEEEEC---CCC----EEECCEEEEcCCCCccCccc
Confidence            9999987766653 4443   553    78999999999998865544

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.23  E-value=1.1e-10  Score=120.24  Aligned_cols=153  Identities=15%  Similarity=0.154  Sum_probs=93.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC-CCCCCCccc---ccC-hhHHHHHHhhhchHHHHHhcCCCccccc
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK-AFSTHPQAH---FIN-NRYALVFRKLDGLAEEIERSQPPVDLWR  116 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~-~~~~~~~~~---~l~-~~~~~~l~~~~gl~~~l~~~~~~~~~~~  116 (455)
                      .++||+|||||+||+.+|+.|++.|.+|+|+|++. .....+|..   ++. ....+.++.+++.+....+..     ..
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~-----gi  100 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQT-----GI  100 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHH-----EE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhc-----cc
Confidence            46999999999999999999999999999999984 232222211   111 122233333433332221110     00


Q ss_pred             ceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHh-cccccccCCCcccccccccccceEEecc
Q 012845          117 KFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILMGH  195 (455)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~i~~~~  195 (455)
                      .+.......+...                ......+++..+.+.|.+.+++ .|+                   +| +++
T Consensus       101 ~f~~l~~~kGpav----------------~~~r~~~Dr~~~~~~L~~~Le~~~GV-------------------eI-~~~  144 (637)
T 2zxi_A          101 QFKMLNTRKGKAV----------------QSPRAQADKKRYREYMKKVCENQENL-------------------YI-KQE  144 (637)
T ss_dssp             EEEEESTTSCGGG----------------CEEEEEECHHHHHHHHHHHHHTCTTE-------------------EE-EES
T ss_pred             ceeecccccCccc----------------cchhhhCCHHHHHHHHHHHHHhCCCC-------------------EE-EEe
Confidence            0110000000000                0011346788899999999987 465                   77 578


Q ss_pred             EEEEeeecCCceE-EEEEeccCCcceeEEEEeCEEEeecCCCchhhhh
Q 012845          196 ECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKL  242 (455)
Q Consensus       196 ~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~  242 (455)
                      +|+++..+++.+. |.+.   +|.    .+.+|.||.|+|.++..+..
T Consensus       145 ~Vt~L~~e~g~V~GV~t~---dG~----~i~AdaVVLATG~~s~~~~~  185 (637)
T 2zxi_A          145 EVVDIIVKNNQVVGVRTN---LGV----EYKTKAVVVTTGTFLNGVIY  185 (637)
T ss_dssp             CEEEEEESSSBEEEEEET---TSC----EEECSEEEECCTTCBTCEEE
T ss_pred             EEEEEEecCCEEEEEEEC---CCc----EEEeCEEEEccCCCccCcee
Confidence            9999988777654 5444   564    78999999999998765543

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=99.21  E-value=1.6e-10  Score=119.55  Aligned_cols=151  Identities=18%  Similarity=0.249  Sum_probs=91.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC-CCCCCCcccccC----hhHHHHHHhhhchHHHHHh-cCCCccc
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK-AFSTHPQAHFIN----NRYALVFRKLDGLAEEIER-SQPPVDL  114 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~-~~~~~~~~~~l~----~~~~~~l~~~~gl~~~l~~-~~~~~~~  114 (455)
                      ..++||+|||||+||+.+|+.|++.|.+|+|+|+.. ......|...+.    ...++.+..++++...... .+     
T Consensus        19 ~~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~g-----   93 (641)
T 3cp8_A           19 SHMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATG-----   93 (641)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHE-----
T ss_pred             cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcC-----
Confidence            346999999999999999999999999999999985 232222221111    1122223333333222111 11     


Q ss_pred             ccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhc-ccccccCCCcccccccccccceEEe
Q 012845          115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILM  193 (455)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~~  193 (455)
                       ..+.......+..+                ......+++..+...|.+.+++. |+                   ++ +
T Consensus        94 -i~f~~l~~~kgpav----------------~~~r~~~Dr~~l~~~L~~~l~~~~GV-------------------~I-~  136 (641)
T 3cp8_A           94 -IQFRMLNRSKGPAM----------------HSPRAQADKTQYSLYMRRIVEHEPNI-------------------DL-L  136 (641)
T ss_dssp             -EEEEEECSSSCTTT----------------CEEEEEECHHHHHHHHHHHHHTCTTE-------------------EE-E
T ss_pred             -CchhhcccccCccc----------------cchhhhcCHHHHHHHHHHHHHhCCCC-------------------EE-E
Confidence             01111000000000                00123568888999999998874 65                   77 4


Q ss_pred             ccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCEEEeecCCCchhh
Q 012845          194 GHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVR  240 (455)
Q Consensus       194 ~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr  240 (455)
                      +.+|+.+..+++.+. |.+.   +|.    ++.+|.||.|+|.++...
T Consensus       137 ~~~V~~L~~d~g~V~GV~t~---~G~----~i~Ad~VVLATG~~s~~~  177 (641)
T 3cp8_A          137 QDTVIGVSANSGKFSSVTVR---SGR----AIQAKAAILACGTFLNGL  177 (641)
T ss_dssp             ECCEEEEEEETTEEEEEEET---TSC----EEEEEEEEECCTTCBTCE
T ss_pred             eeEEEEEEecCCEEEEEEEC---CCc----EEEeCEEEECcCCCCCcc
Confidence            568999887777665 5544   554    789999999999987643

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.21  E-value=4.7e-10  Score=112.08  Aligned_cols=36  Identities=28%  Similarity=0.429  Sum_probs=33.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      +||+|||||++||++|+.|+++|++|+|||+++.+.
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~G   36 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITG   36 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSB
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCC
Confidence            489999999999999999999999999999998764

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.20  E-value=9.5e-11  Score=118.12  Aligned_cols=167  Identities=13%  Similarity=0.121  Sum_probs=90.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcc-----
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVD-----  113 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~-----  113 (455)
                      +..+||+||||||+|+++|..|++.|+  +|+||||.+.+..   .+.........+ .+|...+.+.  ..+..     
T Consensus         4 ~~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG---~~~~~~~~~~~~-~ip~~~~~~~--~~~~~~g~~~   77 (447)
T 2gv8_A            4 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGG---VWNYTSTLSNKL-PVPSTNPILT--TEPIVGPAAL   77 (447)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSST---TCSCCSCCCSCC-CSSBCCTTCC--CCCBCCSSSC
T ss_pred             CCCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCC---eecCCCCCCccc-cccccccccc--cccccccccc
Confidence            346899999999999999999999999  9999999865521   000000000000 0000000000  00000     


Q ss_pred             -cccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEE
Q 012845          114 -LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREIL  192 (455)
Q Consensus       114 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~  192 (455)
                       .|....+ ..................+    .........+..+.++|.+.+.+.+.                   .++
T Consensus        78 ~~~~~~~~-~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~-------------------~i~  133 (447)
T 2gv8_A           78 PVYPSPLY-RDLQTNTPIELMGYCDQSF----KPQTLQFPHRHTIQEYQRIYAQPLLP-------------------FIK  133 (447)
T ss_dssp             CBCCCCCC-TTCBCSSCHHHHSCTTCCC----CTTCCSSCBHHHHHHHHHHHHGGGGG-------------------GEE
T ss_pred             CCccCchh-hhhccCCCHHHhccCCCCC----CCCCCCCCCHHHHHHHHHHHHHHhhC-------------------eEE
Confidence             0000000 0000000000000000000    00012335688899999999888764                   788


Q ss_pred             eccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          193 MGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       193 ~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      ++++|++++..++.+.|++....+|.. ..++.+|.||.|+|.+|.
T Consensus       134 ~~t~V~~v~~~~~~~~V~~~~~~~G~~-~~~~~~d~VVvAtG~~s~  178 (447)
T 2gv8_A          134 LATDVLDIEKKDGSWVVTYKGTKAGSP-ISKDIFDAVSICNGHYEV  178 (447)
T ss_dssp             CSEEEEEEEEETTEEEEEEEESSTTCC-EEEEEESEEEECCCSSSS
T ss_pred             eCCEEEEEEeCCCeEEEEEeecCCCCe-eEEEEeCEEEECCCCCCC
Confidence            999999999888878887762111320 236899999999999874

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.19  E-value=7.5e-11  Score=113.83  Aligned_cols=123  Identities=18%  Similarity=0.235  Sum_probs=84.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      .+.+||+|||||++|+++|+.|+++|++|+|||+.+.......+....         . .                .   
T Consensus        20 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~---------~-~----------------~---   70 (338)
T 3itj_A           20 HVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTT---------T-T----------------E---   70 (338)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGG---------S-S----------------E---
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCccccc---------c-h----------------h---
Confidence            457899999999999999999999999999999976222111111000         0 0                0   


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                              ....             +.....+....+...|.+.+.+.|+                   .++.++ |+++
T Consensus        71 --------~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~gv-------------------~i~~~~-v~~i  109 (338)
T 3itj_A           71 --------IENF-------------PGFPDGLTGSELMDRMREQSTKFGT-------------------EIITET-VSKV  109 (338)
T ss_dssp             --------ECCS-------------TTCTTCEEHHHHHHHHHHHHHHTTC-------------------EEECSC-EEEE
T ss_pred             --------hccc-------------CCCcccCCHHHHHHHHHHHHHHcCC-------------------EEEEeE-EEEE
Confidence                    0000             0000124567888999999999887                   888988 9999


Q ss_pred             eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                      +.+++.+.+.+...+++.    .+.+|.||.|+|..+
T Consensus       110 ~~~~~~~~v~~~~~~~~~----~~~~d~vvlAtG~~~  142 (338)
T 3itj_A          110 DLSSKPFKLWTEFNEDAE----PVTTDAIILATGASA  142 (338)
T ss_dssp             ECSSSSEEEEETTCSSSC----CEEEEEEEECCCEEE
T ss_pred             EEcCCEEEEEEEecCCCc----EEEeCEEEECcCCCc
Confidence            988877776653112333    679999999999854

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.19  E-value=7.1e-10  Score=113.61  Aligned_cols=39  Identities=26%  Similarity=0.424  Sum_probs=36.0

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      ...+||||||||++|+++|+.|+++|.+|+|+||.+...
T Consensus        39 ~~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~G   77 (510)
T 4at0_A           39 DYEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWG   77 (510)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            467999999999999999999999999999999998763

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.18  E-value=1.8e-10  Score=125.03  Aligned_cols=70  Identities=16%  Similarity=0.246  Sum_probs=54.6

Q ss_pred             cccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCE
Q 012845          150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNI  228 (455)
Q Consensus       150 ~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~  228 (455)
                      ..++...+...|.+.+.+.|+                   +|+.+++|++++.+++.+. |.+.   +|     ++.+|.
T Consensus       146 g~v~p~~l~~~L~~~a~~~Gv-------------------~i~~~t~V~~i~~~~~~v~~V~t~---~G-----~i~Ad~  198 (830)
T 1pj5_A          146 GLASAARAVQLLIKRTESAGV-------------------TYRGSTTVTGIEQSGGRVTGVQTA---DG-----VIPADI  198 (830)
T ss_dssp             EEECHHHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEEETTEEEEEEET---TE-----EEECSE
T ss_pred             ceEcHHHHHHHHHHHHHHcCC-------------------EEECCceEEEEEEeCCEEEEEEEC---Cc-----EEECCE
Confidence            445778899999999999887                   9999999999998777653 4332   44     689999


Q ss_pred             EEeecCCCchh-hhhcCCC
Q 012845          229 LIGTDGAGSTV-RKLVGID  246 (455)
Q Consensus       229 vV~AdG~~S~v-r~~l~~~  246 (455)
                      ||.|+|.+|.. .+.++..
T Consensus       199 VV~AaG~~s~~l~~~~g~~  217 (830)
T 1pj5_A          199 VVSCAGFWGAKIGAMIGMA  217 (830)
T ss_dssp             EEECCGGGHHHHHHTTTCC
T ss_pred             EEECCccchHHHHHHhCCC
Confidence            99999999963 4445543

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.18  E-value=1.5e-10  Score=119.50  Aligned_cols=139  Identities=16%  Similarity=0.214  Sum_probs=89.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      +.++||+|||||++|+++|+.|++.|++|+|||+++...    |       ......+||+...     .+...+. +  
T Consensus        19 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~G----G-------tw~~~~ypg~~~d-----v~s~~y~-~--   79 (549)
T 4ap3_A           19 TTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVG----G-------VWYWNRYPGARCD-----VESIDYS-Y--   79 (549)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC----T-------HHHHCCCTTCBCS-----SCTTTSS-C--
T ss_pred             CCCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCC----C-------ccccCCCCCceeC-----CCchhcc-c--
Confidence            457899999999999999999999999999999987542    1       1111112222100     0000000 0  


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                        ........      ..       .......++.++.++|.+.+++.++.                 ..++++++|+++
T Consensus        80 --~f~~~~~~------~~-------~~~~~~~~~~ei~~yl~~~~~~~g~~-----------------~~i~~~~~V~~i  127 (549)
T 4ap3_A           80 --SFSPELEQ------EW-------NWSEKYATQPEILAYLEHVADRFDLR-----------------RDIRFDTRVTSA  127 (549)
T ss_dssp             --CSCHHHHH------HC-------CCSSSSCBHHHHHHHHHHHHHHTTCG-----------------GGEECSCCEEEE
T ss_pred             --cccccccc------CC-------CCccCCCCHHHHHHHHHHHHHHcCCC-----------------ccEEECCEEEEE
Confidence              00000000      00       00112357788999999999988752                 278999999999


Q ss_pred             eecCC--ceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          201 SATDQ--CINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       201 ~~~~~--~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                      +.+++  .+.|++.   +|.    ++.+|.||.|+|..|
T Consensus       128 ~~~~~~~~w~V~~~---~G~----~i~ad~lV~AtG~~s  159 (549)
T 4ap3_A          128 VLDEEGLRWTVRTD---RGD----EVSARFLVVAAGPLS  159 (549)
T ss_dssp             EEETTTTEEEEEET---TCC----EEEEEEEEECCCSEE
T ss_pred             EEcCCCCEEEEEEC---CCC----EEEeCEEEECcCCCC
Confidence            87765  5666665   664    789999999999866

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.17  E-value=2.1e-10  Score=118.06  Aligned_cols=140  Identities=17%  Similarity=0.250  Sum_probs=89.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHH-hCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLT-KLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La-~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~  119 (455)
                      +.++||+|||||++|+++|+.|+ +.|++|+|||+++...    |       ......+||+...+     +...     
T Consensus         6 ~~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~G----G-------tw~~~~ypg~~~d~-----~s~~-----   64 (540)
T 3gwf_A            6 THTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPG----G-------TWYWNRYPGALSDT-----ESHL-----   64 (540)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSC----T-------HHHHCCCTTCEEEE-----EGGG-----
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCC----C-------cccccCCCCceecC-----Ccce-----
Confidence            35689999999999999999999 9999999999987552    1       00111112220000     0000     


Q ss_pred             EeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEE
Q 012845          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (455)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~  199 (455)
                                ......  ..... .........++.++.+.|.+.+++.|+.                 ..++++++|++
T Consensus        65 ----------~~~~~~--~~~~~-~~~~~~~~~~~~ei~~~l~~~~~~~g~~-----------------~~i~~~~~V~~  114 (540)
T 3gwf_A           65 ----------YRFSFD--RDLLQ-ESTWKTTYITQPEILEYLEDVVDRFDLR-----------------RHFKFGTEVTS  114 (540)
T ss_dssp             ----------SSCCSC--HHHHH-HCCCSBSEEEHHHHHHHHHHHHHHTTCG-----------------GGEEESCCEEE
T ss_pred             ----------eeeccc--ccccc-CCCCcccCCCHHHHHHHHHHHHHHcCCc-----------------ceeEeccEEEE
Confidence                      000000  00000 0011123356888999999999988752                 27899999999


Q ss_pred             eeecCC--ceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          200 VSATDQ--CINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       200 i~~~~~--~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      ++.+++  .+.|++.   +|+    ++.+|.||.|+|..|.
T Consensus       115 i~~~~~~~~~~V~~~---~G~----~i~ad~lV~AtG~~s~  148 (540)
T 3gwf_A          115 ALYLDDENLWEVTTD---HGE----VYRAKYVVNAVGLLSA  148 (540)
T ss_dssp             EEEETTTTEEEEEET---TSC----EEEEEEEEECCCSCCS
T ss_pred             EEEeCCCCEEEEEEc---CCC----EEEeCEEEECCccccc
Confidence            988765  5666665   665    7899999999998774

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.16  E-value=2.8e-10  Score=117.50  Aligned_cols=140  Identities=19%  Similarity=0.172  Sum_probs=88.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      +.++||+|||||++|+++|+.|++.|++|+|||+.+...   ..+        .....||+.-     ..+..       
T Consensus        14 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~G---G~w--------~~~~~pg~~~-----d~~~~-------   70 (542)
T 1w4x_A           14 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVG---GVW--------YWNRYPGARC-----DIESI-------   70 (542)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC---THH--------HHCCCTTCBC-----SSCTT-------
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCC---Ccc--------cccCCCceee-----ccccc-------
Confidence            457899999999999999999999999999999987652   100        0111122110     00000       


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                              ......... .... . .......++.++.++|...+++.+..                 ..++++++|+++
T Consensus        71 --------~~~~~f~~~-~~~~-~-~~~~~~~~~~~i~~yl~~~~~~~~l~-----------------~~i~~~~~V~~~  122 (542)
T 1w4x_A           71 --------EYCYSFSEE-VLQE-W-NWTERYASQPEILRYINFVADKFDLR-----------------SGITFHTTVTAA  122 (542)
T ss_dssp             --------TSSCCSCHH-HHHH-C-CCCBSSCBHHHHHHHHHHHHHHTTGG-----------------GGEECSCCEEEE
T ss_pred             --------ccccccChh-hhhc-c-CcccccCCHHHHHHHHHHHHHHcCCC-----------------ceEEcCcEEEEE
Confidence                    000000000 0000 0 00012346788889998888877641                 378999999999


Q ss_pred             eecCC--ceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          201 SATDQ--CINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       201 ~~~~~--~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      +.+++  .+.|++.   +|.    ++++|.||.|+|.+|.
T Consensus       123 ~~~~~~~~w~V~~~---~G~----~~~ad~vV~AtG~~s~  155 (542)
T 1w4x_A          123 AFDEATNTWTVDTN---HGD----RIRARYLIMASGQLSV  155 (542)
T ss_dssp             EEETTTTEEEEEET---TCC----EEEEEEEEECCCSCCC
T ss_pred             EEcCCCCeEEEEEC---CCC----EEEeCEEEECcCCCCC
Confidence            87654  4666655   664    7899999999999874

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.16  E-value=2.5e-10  Score=109.26  Aligned_cols=112  Identities=14%  Similarity=0.192  Sum_probs=80.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEe
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~  121 (455)
                      +.+||+|||||++|+++|+.|+++|++|+|||+.  +   +..  +..        .            +.         
T Consensus        14 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~---gg~--~~~--------~------------~~---------   57 (323)
T 3f8d_A           14 EKFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--P---GGQ--LTE--------A------------GI---------   57 (323)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--T---TGG--GGG--------C------------CE---------
T ss_pred             CccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--C---CCe--ecc--------c------------cc---------
Confidence            4689999999999999999999999999999987  2   110  000        0            00         


Q ss_pred             ecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEee
Q 012845          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (455)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~  201 (455)
                             ....+            .  ...+....+.+.+.+.+.+.|+                   +++. ++|++++
T Consensus        58 -------~~~~~------------~--~~~~~~~~~~~~~~~~~~~~~v-------------------~~~~-~~v~~i~   96 (323)
T 3f8d_A           58 -------VDDYL------------G--LIEIQASDMIKVFNKHIEKYEV-------------------PVLL-DIVEKIE   96 (323)
T ss_dssp             -------ECCST------------T--STTEEHHHHHHHHHHHHHTTTC-------------------CEEE-SCEEEEE
T ss_pred             -------ccccC------------C--CCCCCHHHHHHHHHHHHHHcCC-------------------EEEE-EEEEEEE
Confidence                   00000            0  0114567888889999988886                   7777 8999999


Q ss_pred             ecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       202 ~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                      .+++.+.+.+.   ++.    .+.+|.||.|+|...
T Consensus        97 ~~~~~~~v~~~---~g~----~~~~d~lvlAtG~~~  125 (323)
T 3f8d_A           97 NRGDEFVVKTK---RKG----EFKADSVILGIGVKR  125 (323)
T ss_dssp             EC--CEEEEES---SSC----EEEEEEEEECCCCEE
T ss_pred             ecCCEEEEEEC---CCC----EEEcCEEEECcCCCC
Confidence            88777777665   554    789999999999874

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.15  E-value=1.8e-10  Score=110.88  Aligned_cols=118  Identities=20%  Similarity=0.284  Sum_probs=84.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEe
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~  121 (455)
                      ..+||+|||||++|+++|+.|++.|++|+|||+.+...                    |.+...    .|...     . 
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g--------------------G~~~~~----~~~~~-----~-   55 (332)
T 3lzw_A            6 KVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLG--------------------GQLSAL----YPEKY-----I-   55 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC--------------------HHHHHH----CTTSE-----E-
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCC--------------------ceehhc----CCCce-----E-
Confidence            45899999999999999999999999999999987642                    111100    00000     0 


Q ss_pred             ecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEee
Q 012845          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (455)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~  201 (455)
                              ...             + ....+....+...|.+.+.+.++                   .++++++|++++
T Consensus        56 --------~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~v~~i~   94 (332)
T 3lzw_A           56 --------YDV-------------A-GFPKIRAQELINNLKEQMAKFDQ-------------------TICLEQAVESVE   94 (332)
T ss_dssp             --------CCS-------------T-TCSSEEHHHHHHHHHHHHTTSCC-------------------EEECSCCEEEEE
T ss_pred             --------ecc-------------C-CCCCCCHHHHHHHHHHHHHHhCC-------------------cEEccCEEEEEE
Confidence                    000             0 00123567888999999888876                   899999999998


Q ss_pred             ecCC-ceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          202 ATDQ-CINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       202 ~~~~-~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      ..++ .+.+.+.   ++     .+.+|.||.|+|..+.
T Consensus        95 ~~~~~~~~v~~~---~g-----~~~~d~vVlAtG~~~~  124 (332)
T 3lzw_A           95 KQADGVFKLVTN---EE-----THYSKTVIITAGNGAF  124 (332)
T ss_dssp             ECTTSCEEEEES---SE-----EEEEEEEEECCTTSCC
T ss_pred             ECCCCcEEEEEC---CC-----EEEeCEEEECCCCCcC
Confidence            8766 5666654   54     4789999999998653

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=99.12  E-value=6e-10  Score=106.20  Aligned_cols=143  Identities=18%  Similarity=0.264  Sum_probs=86.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCCCCc-c------cccChhHHHHHHhhhchHHHHHhcCCCc
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTHPQ-A------HFINNRYALVFRKLDGLAEEIERSQPPV  112 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~~~~~~-~------~~l~~~~~~~l~~~~gl~~~l~~~~~~~  112 (455)
                      ..+||+||||||+|+++|+.|+++  |++|+|+|+.+.+..... +      ..+.+.....|..+          +.+.
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~----------Gv~~  133 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQEL----------EIPY  133 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHT----------TCCC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhh----------Cccc
Confidence            457999999999999999999998  999999999877631110 0      01111122222222          2111


Q ss_pred             ccccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhc-ccccccCCCcccccccccccceE
Q 012845          113 DLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREI  191 (455)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i  191 (455)
                      ..          .+.                    .........+...|++.+.+. |+                   ++
T Consensus       134 ~~----------~g~--------------------~~~~~~~~~~~~~L~~~a~~~~GV-------------------~i  164 (326)
T 2gjc_A          134 ED----------EGD--------------------YVVVKHAALFISTVLSKVLQLPNV-------------------KL  164 (326)
T ss_dssp             EE----------CSS--------------------EEEESCHHHHHHHHHHHHHTSTTE-------------------EE
T ss_pred             cc----------CCC--------------------eEEEcchHHHHHHHHHHHHHhcCc-------------------EE
Confidence            00          000                    001113456788888888875 65                   99


Q ss_pred             EeccEEEEeeecC----C--ceE-EEEEec---cCC----cceeEEEEe---------------CEEEeecCCCchhhhh
Q 012845          192 LMGHECVSVSATD----Q--CIN-VIASFL---KEG----KCTERNIQC---------------NILIGTDGAGSTVRKL  242 (455)
Q Consensus       192 ~~~~~v~~i~~~~----~--~~~-v~~~~~---~~g----~~~~~~~~~---------------d~vV~AdG~~S~vr~~  242 (455)
                      +.+++|+++..++    +  .+. |.+.+.   .++    .....++.+               |+||+|+|..|++.+.
T Consensus       165 ~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~~~~~~VV~ATG~~~~~~~~  244 (326)
T 2gjc_A          165 FNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAF  244 (326)
T ss_dssp             ETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCSSTTCCEEEECCCCC--CCSH
T ss_pred             EecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeeccccccccccccCCEEEECcCCCchHHHH
Confidence            9999999998763    2  332 333211   111    111247899               9999999999988777


Q ss_pred             c
Q 012845          243 V  243 (455)
Q Consensus       243 l  243 (455)
                      +
T Consensus       245 ~  245 (326)
T 2gjc_A          245 C  245 (326)
T ss_dssp             H
T ss_pred             H
Confidence            6

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.12  E-value=9.6e-10  Score=114.01  Aligned_cols=74  Identities=19%  Similarity=0.084  Sum_probs=53.7

Q ss_pred             ccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCEE
Q 012845          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNIL  229 (455)
Q Consensus       151 ~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~v  229 (455)
                      .++...+...|.+.+.+.|+                   +|+.+++|+++..+++.+. |.+....++.  ..++.+|.|
T Consensus       184 ~v~~~~l~~~l~~~a~~~Ga-------------------~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~--~~~i~A~~V  242 (571)
T 2rgh_A          184 RNNDARLVIDNIKKAAEDGA-------------------YLVSKMKAVGFLYEGDQIVGVKARDLLTDE--VIEIKAKLV  242 (571)
T ss_dssp             ECCHHHHHHHHHHHHHHTTC-------------------EEESSEEEEEEEEETTEEEEEEEEETTTCC--EEEEEBSCE
T ss_pred             eEchHHHHHHHHHHHHHcCC-------------------eEEeccEEEEEEEeCCEEEEEEEEEcCCCC--EEEEEcCEE
Confidence            35566788888888888887                   9999999999998776543 5544111232  236899999


Q ss_pred             EeecCCCch-hhhhcCC
Q 012845          230 IGTDGAGST-VRKLVGI  245 (455)
Q Consensus       230 V~AdG~~S~-vr~~l~~  245 (455)
                      |.|+|.+|. +++..+.
T Consensus       243 V~AaG~ws~~l~~~~g~  259 (571)
T 2rgh_A          243 INTSGPWVDKVRNLNFT  259 (571)
T ss_dssp             EECCGGGHHHHHTTCCS
T ss_pred             EECCChhHHHHHHhhcc
Confidence            999999985 5555543

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.11  E-value=2.6e-10  Score=115.39  Aligned_cols=156  Identities=18%  Similarity=0.198  Sum_probs=89.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHh---CCCC---EEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCc--ccc
Q 012845           44 VPVLIVGAGPVGLVLSILLTK---LGIK---CSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPV--DLW  115 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~---~g~~---V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~--~~~  115 (455)
                      +||+||||||+|+++|..|++   .|++   |+|||+.+.+.   ..+.....        +|+..    .+.+.  ..+
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~G---G~w~~~~~--------~g~~~----~g~~~~~~~y   67 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWG---GQWNYTWR--------TGLDE----NGEPVHSSMY   67 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSC---GGGSCCSC--------CSBCT----TSSBCCCCCC
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCC---CEeecCCC--------CCccc----cCCCCcCccc
Confidence            689999999999999999999   9999   99999987652   11111100        01100    00000  001


Q ss_pred             cceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEecc
Q 012845          116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH  195 (455)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~  195 (455)
                      .....  +....... +.   ...+...........+++..+.+.|.+.+++.|+.                 ..+++++
T Consensus        68 ~~l~~--~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~-----------------~~i~~~~  124 (464)
T 2xve_A           68 RYLWS--NGPKECLE-FA---DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVR-----------------KYIRFNT  124 (464)
T ss_dssp             TTCBC--SSCGGGTC-BT---TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCG-----------------GGEECSE
T ss_pred             cchhh--cCChhhcc-cC---CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCc-----------------ceEEeCC
Confidence            10000  00000000 00   00000000000123457889999999999988861                 1388999


Q ss_pred             EEEEeeecCC--ceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          196 ECVSVSATDQ--CINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       196 ~v~~i~~~~~--~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      +|++++..++  .+.|++....+|  ...++.+|.||.|+|.+|.-
T Consensus       125 ~V~~v~~~~~~~~~~V~~~~~~~g--~~~~~~~d~VVvAtG~~s~p  168 (464)
T 2xve_A          125 AVRHVEFNEDSQTFTVTVQDHTTD--TIYSEEFDYVVCCTGHFSTP  168 (464)
T ss_dssp             EEEEEEEETTTTEEEEEEEETTTT--EEEEEEESEEEECCCSSSSB
T ss_pred             EEEEEEEcCCCCcEEEEEEEcCCC--ceEEEEcCEEEECCCCCCCC
Confidence            9999987765  677776621123  23478999999999987643

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.11  E-value=1.9e-10  Score=109.73  Aligned_cols=36  Identities=25%  Similarity=0.512  Sum_probs=32.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      |++|||+||||||||+++|+.|+|.|++|+|||+..
T Consensus         4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~   39 (304)
T 4fk1_A            4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNT   39 (304)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            678999999999999999999999999999999863

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.11  E-value=7.6e-10  Score=113.93  Aligned_cols=38  Identities=34%  Similarity=0.491  Sum_probs=34.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      ...+||+|||||++||++|+.|++ |.+|+|+||.+...
T Consensus         6 ~~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~   43 (540)
T 1chu_A            6 EHSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTE   43 (540)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC
T ss_pred             CCCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCC
Confidence            457899999999999999999999 99999999987653

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.11  E-value=7.3e-10  Score=112.07  Aligned_cols=154  Identities=16%  Similarity=0.235  Sum_probs=86.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCC-----CCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCccccc
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLG-----IKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWR  116 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g-----~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~  116 (455)
                      ..+||+|||||++|+++|+.|++.|     ++|+|||+.+...... +..+....+.    . .+..++.....|...+.
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~-~~~~~~~~~~----~-~~~~~l~~~~~p~~~~~  102 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHG-NTLVSQSELQ----I-SFLKDLVSLRNPTSPYS  102 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSG-GGCCSSCBCS----S-CTTSSSSTTTCTTCTTS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcC-CCCCCCCcCC----c-chhhccccccCCCCCCC
Confidence            4689999999999999999999999     9999999998654111 0000000000    0 00000000000000000


Q ss_pred             ceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccE
Q 012845          117 KFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHE  196 (455)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~  196 (455)
                      ...+. ...+...         .+    .........+..+.++|...+++.+.                   .++++++
T Consensus       103 ~~~~l-~~~~~~~---------~~----~~~~~~~~~~~~~~~~l~~~~~~~~~-------------------~i~~~~~  149 (463)
T 3s5w_A          103 FVNYL-HKHDRLV---------DF----INLGTFYPCRMEFNDYLRWVASHFQE-------------------QSRYGEE  149 (463)
T ss_dssp             HHHHH-HHTTCHH---------HH----HHHCCSCCBHHHHHHHHHHHHTTCTT-------------------TEEESEE
T ss_pred             hhHhh-hhcCcee---------ec----ccccCCCCCHHHHHHHHHHHHHHcCC-------------------eEEeCCE
Confidence            00000 0000000         00    00011234678888999888888775                   8999999


Q ss_pred             EEEeeec---CCce--EEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          197 CVSVSAT---DQCI--NVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       197 v~~i~~~---~~~~--~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                      |++++..   ++.+  .|.+.   ++.+...++.+|.||.|+|...
T Consensus       150 V~~i~~~~~~~~~~~~~V~~~---~g~g~~~~~~~d~lVlAtG~~p  192 (463)
T 3s5w_A          150 VLRIEPMLSAGQVEALRVISR---NADGEELVRTTRALVVSPGGTP  192 (463)
T ss_dssp             EEEEEEEEETTEEEEEEEEEE---ETTSCEEEEEESEEEECCCCEE
T ss_pred             EEEEEEecCCCceEEEEEEEe---cCCCceEEEEeCEEEECCCCCC
Confidence            9999876   3332  45555   4444444789999999999743

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.10  E-value=8.5e-10  Score=114.95  Aligned_cols=68  Identities=15%  Similarity=0.252  Sum_probs=50.5

Q ss_pred             hhHHHHHHHHHHhcc-cccccCCCcccccccccccceEEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCEEEee
Q 012845          155 YKLNKLLLKQLEKLN-FKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGT  232 (455)
Q Consensus       155 ~~l~~~L~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~A  232 (455)
                      ..+...|.+.+.+.| +                   +|++++.|+++..+++.+. +.+....+|.  ...+.+|.||.|
T Consensus       134 ~~l~~~L~~~~~~~gnv-------------------~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~--~~~i~A~~VVlA  192 (602)
T 1kf6_A          134 FHMLHTLFQTSLQFPQI-------------------QRFDEHFVLDILVDDGHVRGLVAMNMMEGT--LVQIRANAVVMA  192 (602)
T ss_dssp             HHHHHHHHHHHTTCTTE-------------------EEEETEEEEEEEEETTEEEEEEEEETTTTE--EEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHhCCCc-------------------EEEeCCEEEEEEEeCCEEEEEEEEEcCCCc--EEEEEcCeEEEC
Confidence            578888999888877 5                   9999999999988766443 3333112342  346899999999


Q ss_pred             cCCCchhhhhc
Q 012845          233 DGAGSTVRKLV  243 (455)
Q Consensus       233 dG~~S~vr~~l  243 (455)
                      +|.+|.++...
T Consensus       193 tGg~s~~~~~~  203 (602)
T 1kf6_A          193 TGGAGRVYRYN  203 (602)
T ss_dssp             CCCCGGGSSSB
T ss_pred             CCCCcccccCc
Confidence            99999886554

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.10  E-value=4e-09  Score=107.66  Aligned_cols=49  Identities=16%  Similarity=0.269  Sum_probs=33.5

Q ss_pred             ceEEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcC
Q 012845          189 REILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVG  244 (455)
Q Consensus       189 ~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~  244 (455)
                      ++|+++++|++|..+++++. |++.   +|+    ++.+|.||.+.+.....++.++
T Consensus       236 g~I~~~~~V~~I~~~~~~~~gV~~~---~g~----~~~ad~VV~~a~~~~~~~~Ll~  285 (501)
T 4dgk_A          236 GEVVLNARVSHMETTGNKIEAVHLE---DGR----RFLTQAVASNADVVHTYRDLLS  285 (501)
T ss_dssp             CEEECSCCEEEEEEETTEEEEEEET---TSC----EEECSCEEECCC----------
T ss_pred             CceeeecceeEEEeeCCeEEEEEec---CCc----EEEcCEEEECCCHHHHHHHhcc
Confidence            49999999999999888876 5555   775    8899999998888777666664

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.10  E-value=2e-09  Score=111.71  Aligned_cols=66  Identities=11%  Similarity=0.070  Sum_probs=49.0

Q ss_pred             chhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecC-CceE-EEEEeccCCcceeEEEEeCEEE
Q 012845          153 SQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD-QCIN-VIASFLKEGKCTERNIQCNILI  230 (455)
Q Consensus       153 ~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~-~~~~-v~~~~~~~g~~~~~~~~~d~vV  230 (455)
                      ....+.+.|.+.+++.|+                   +|+++++|+++..++ +.+. |.+.. .+|  ...++.+|.||
T Consensus       253 ~g~~l~~~L~~~~~~~gv-------------------~i~~~t~v~~l~~~~~g~v~GV~~~~-~~G--~~~~i~A~~VV  310 (572)
T 1d4d_A          253 VGAHVAQVLWDNAVKRGT-------------------DIRLNSRVVRILEDASGKVTGVLVKG-EYT--GYYVIKADAVV  310 (572)
T ss_dssp             HHHHHHHHHHHHHHHTTC-------------------EEESSEEEEEEEEC--CCEEEEEEEE-TTT--EEEEEECSEEE
T ss_pred             CHHHHHHHHHHHHHHcCC-------------------eEEecCEEEEEEECCCCeEEEEEEEe-CCC--cEEEEEcCEEE
Confidence            356788999999999887                   999999999998765 5443 44441 133  23478999999


Q ss_pred             eecCCCchhh
Q 012845          231 GTDGAGSTVR  240 (455)
Q Consensus       231 ~AdG~~S~vr  240 (455)
                      .|+|.+|..+
T Consensus       311 lAtGg~~~~~  320 (572)
T 1d4d_A          311 IAAGGFAKNN  320 (572)
T ss_dssp             ECCCCCTTCH
T ss_pred             EeCCCCccCH
Confidence            9999988643

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.09  E-value=4.2e-10  Score=107.94  Aligned_cols=114  Identities=18%  Similarity=0.170  Sum_probs=78.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      ++++||+||||||+|+++|+.|++.|++|+|||+.. +   +......          +.           .   .    
T Consensus        14 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~---gg~~~~~----------~~-----------~---~----   61 (319)
T 3cty_A           14 ERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAV-A---GGLTAEA----------PL-----------V---E----   61 (319)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-T---TGGGGGC----------SC-----------B---C----
T ss_pred             cCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC-C---Ccccccc----------ch-----------h---h----
Confidence            457899999999999999999999999999999842 2   1100000          00           0   0    


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                                ..+            ..  ..+.+..+.+.+.+.+.+.|+                   ++++ .+|+.+
T Consensus        62 ----------~~~------------~~--~~~~~~~~~~~~~~~~~~~~v-------------------~~~~-~~v~~i   97 (319)
T 3cty_A           62 ----------NYL------------GF--KSIVGSELAKLFADHAANYAK-------------------IREG-VEVRSI   97 (319)
T ss_dssp             ----------CBT------------TB--SSBCHHHHHHHHHHHHHTTSE-------------------EEET-CCEEEE
T ss_pred             ----------hcC------------CC--cccCHHHHHHHHHHHHHHcCC-------------------EEEE-eeEEEE
Confidence                      000            00  123456777888888888776                   7777 789999


Q ss_pred             eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      +.+++.+.+.+    ++.    .+.+|.||.|+|..+.
T Consensus        98 ~~~~~~~~v~~----~~~----~~~~~~li~AtG~~~~  127 (319)
T 3cty_A           98 KKTQGGFDIET----NDD----TYHAKYVIITTGTTHK  127 (319)
T ss_dssp             EEETTEEEEEE----SSS----EEEEEEEEECCCEEEC
T ss_pred             EEeCCEEEEEE----CCC----EEEeCEEEECCCCCcc
Confidence            88777665543    333    6899999999997653

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.09  E-value=6.3e-10  Score=105.21  Aligned_cols=112  Identities=13%  Similarity=0.095  Sum_probs=79.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ++||+|||||++|+++|+.|++.|++|+|||+.+....                 ++..          ..         
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~-----------------~~~~----------~~---------   45 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNR-----------------FASH----------SH---------   45 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGG-----------------GCSC----------CC---------
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccc-----------------cchh----------hc---------
Confidence            37999999999999999999999999999998652100                 0000          00         


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                         +     .             + .....+...+...+.+.+.+.+.                  +.++ +.+|+.++.
T Consensus        46 ---~-----~-------------~-~~~~~~~~~~~~~~~~~~~~~~~------------------v~~~-~~~v~~i~~   84 (297)
T 3fbs_A           46 ---G-----F-------------L-GQDGKAPGEIIAEARRQIERYPT------------------IHWV-EGRVTDAKG   84 (297)
T ss_dssp             ---S-----S-------------T-TCTTCCHHHHHHHHHHHHTTCTT------------------EEEE-ESCEEEEEE
T ss_pred             ---C-----C-------------c-CCCCCCHHHHHHHHHHHHHhcCC------------------eEEE-EeEEEEEEE
Confidence               0     0             0 00123566788888888887632                  2444 569999998


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      +++.+.+.+.   ++.    ++.+|.||.|+|..+.
T Consensus        85 ~~~~~~v~~~---~g~----~~~~d~vviAtG~~~~  113 (297)
T 3fbs_A           85 SFGEFIVEID---GGR----RETAGRLILAMGVTDE  113 (297)
T ss_dssp             ETTEEEEEET---TSC----EEEEEEEEECCCCEEE
T ss_pred             cCCeEEEEEC---CCC----EEEcCEEEECCCCCCC
Confidence            8877777765   664    7899999999998654

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.09  E-value=7.3e-10  Score=108.37  Aligned_cols=140  Identities=18%  Similarity=0.286  Sum_probs=84.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      +++||+|||||++|+++|+.|++.|+ +|+|||+.+ +.   ..          +..++...    ....+.  +..   
T Consensus         3 ~~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~G---g~----------~~~~~~~~----~~~~~~--~~~---   59 (369)
T 3d1c_A            3 QHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VG---HS----------FKHWPKST----RTITPS--FTS---   59 (369)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TT---HH----------HHTSCTTC----BCSSCC--CCC---
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CC---Cc----------cccCcccc----cccCcc--hhc---
Confidence            36899999999999999999999999 999999986 31   10          00010000    000000  000   


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                        ...+..  .............  ......+++..+...|.+.+++.|+                   .++++++|+++
T Consensus        60 --~~~g~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~gv-------------------~i~~~~~v~~i  114 (369)
T 3d1c_A           60 --NGFGMP--DMNAISMDTSPAF--TFNEEHISGETYAEYLQVVANHYEL-------------------NIFENTVVTNI  114 (369)
T ss_dssp             --GGGTCC--CTTCSSTTCCHHH--HHCCSSCBHHHHHHHHHHHHHHTTC-------------------EEECSCCEEEE
T ss_pred             --ccCCch--hhhhccccccccc--cccccCCCHHHHHHHHHHHHHHcCC-------------------eEEeCCEEEEE
Confidence              000000  0000000000000  0001234567788888888888886                   89999999999


Q ss_pred             eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                      +.+++.+.|.+.   ++     ++.+|.||.|+|..+
T Consensus       115 ~~~~~~~~v~~~---~g-----~~~~d~vVlAtG~~~  143 (369)
T 3d1c_A          115 SADDAYYTIATT---TE-----TYHADYIFVATGDYN  143 (369)
T ss_dssp             EECSSSEEEEES---SC-----CEEEEEEEECCCSTT
T ss_pred             EECCCeEEEEeC---CC-----EEEeCEEEECCCCCC
Confidence            987777777654   44     478999999999876

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.08  E-value=2.9e-08  Score=101.14  Aligned_cols=37  Identities=30%  Similarity=0.405  Sum_probs=34.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      ++||+|||||++||++|+.|+++|++|+|||+++.+.
T Consensus        39 ~~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~G   75 (495)
T 2vvm_A           39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIG   75 (495)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSB
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            4899999999999999999999999999999998764

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.07  E-value=2.2e-10  Score=118.05  Aligned_cols=140  Identities=14%  Similarity=0.252  Sum_probs=88.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      +..+||+|||||++|+++|+.|++.|++|+|||+++...   ..        .....+||+.-     ..+...+. +  
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~G---Gt--------w~~~~yPg~~~-----d~~~~~y~-~--   67 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVG---GT--------WYWNRYPGCRL-----DTESYAYG-Y--   67 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC---TH--------HHHCCCTTCBC-----SSCHHHHC-H--
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCC---Cc--------cccCCCCceee-----cCchhhcc-c--
Confidence            346899999999999999999999999999999987652   11        01111222100     00000000 0  


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                      .+  ......      ..       .......++.++...+.+.+++.++.                 ..++++++|+++
T Consensus        68 ~f--~~~~~~------~~-------~~~~~~~~~~ei~~yl~~~~~~~~l~-----------------~~i~~~~~V~~~  115 (545)
T 3uox_A           68 FA--LKGIIP------EW-------EWSENFASQPEMLRYVNRAADAMDVR-----------------KHYRFNTRVTAA  115 (545)
T ss_dssp             HH--HTTSST------TC-------CCSBSSCBHHHHHHHHHHHHHHHTCG-----------------GGEECSCCEEEE
T ss_pred             cc--Cccccc------CC-------CccccCCCHHHHHHHHHHHHHHcCCc-----------------CcEEECCEEEEE
Confidence            00  000000      00       00112346788999999998887752                 278899999999


Q ss_pred             eecCC--ceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          201 SATDQ--CINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       201 ~~~~~--~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      +.+++  .+.|++.   +|.    ++.+|.||.|+|..|.
T Consensus       116 ~~~~~~~~w~V~~~---~G~----~~~ad~lV~AtG~~s~  148 (545)
T 3uox_A          116 RYVENDRLWEVTLD---NEE----VVTCRFLISATGPLSA  148 (545)
T ss_dssp             EEEGGGTEEEEEET---TTE----EEEEEEEEECCCSCBC
T ss_pred             EEeCCCCEEEEEEC---CCC----EEEeCEEEECcCCCCC
Confidence            87554  5666665   664    7899999999998764

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=99.07  E-value=4.2e-09  Score=109.44  Aligned_cols=38  Identities=21%  Similarity=0.427  Sum_probs=35.0

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..++||+|||||++|+++|+.|++.|.+|+|+||.+..
T Consensus         5 ~~~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~   42 (588)
T 2wdq_A            5 VREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPT   42 (588)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGG
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            45789999999999999999999999999999998654

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.07  E-value=8.6e-10  Score=105.25  Aligned_cols=114  Identities=19%  Similarity=0.296  Sum_probs=80.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      +||+||||||+|+++|+.|++.|+ +|+|||+.. +    .+.....        . .+              .      
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~-~----gg~~~~~--------~-~~--------------~------   47 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGM-P----GGQITGS--------S-EI--------------E------   47 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSSS-T----TCGGGGC--------S-CB--------------C------
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCCC-C----Ccccccc--------c-cc--------------c------
Confidence            699999999999999999999999 999999852 1    1110000        0 00              0      


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                              ..             +.....+++..+.+.|.+.+.+.|+                   +++. ++|++++.
T Consensus        48 --------~~-------------~~~~~~~~~~~~~~~l~~~~~~~~v-------------------~~~~-~~v~~i~~   86 (311)
T 2q0l_A           48 --------NY-------------PGVKEVVSGLDFMQPWQEQCFRFGL-------------------KHEM-TAVQRVSK   86 (311)
T ss_dssp             --------CS-------------TTCCSCBCHHHHHHHHHHHHHTTSC-------------------EEEC-SCEEEEEE
T ss_pred             --------cC-------------CCCcccCCHHHHHHHHHHHHHHcCC-------------------EEEE-EEEEEEEE
Confidence                    00             0000134677888889888888876                   7777 78999988


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      +++.+.+.+.   ++.    ++.+|.||.|+|..+..
T Consensus        87 ~~~~~~v~~~---~g~----~~~~~~vv~AtG~~~~~  116 (311)
T 2q0l_A           87 KDSHFVILAE---DGK----TFEAKSVIIATGGSPKR  116 (311)
T ss_dssp             ETTEEEEEET---TSC----EEEEEEEEECCCEEECC
T ss_pred             cCCEEEEEEc---CCC----EEECCEEEECCCCCCCC
Confidence            7776666554   554    78999999999976643

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=99.07  E-value=4.1e-09  Score=110.60  Aligned_cols=38  Identities=21%  Similarity=0.277  Sum_probs=34.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      +.++||||||||++||++|+.|++.|.+|+|+||....
T Consensus         3 ~~~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~   40 (660)
T 2bs2_A            3 VQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVK   40 (660)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGG
T ss_pred             cccccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence            45789999999999999999999999999999998654

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.07  E-value=1e-10  Score=112.84  Aligned_cols=120  Identities=18%  Similarity=0.217  Sum_probs=80.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      +..+||+||||||+|+++|+.|++.|++|+|||+.........+. +.            .       .      ..   
T Consensus         6 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~-~~------------~-------~------~~---   56 (333)
T 1vdc_A            6 THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQ-LT------------T-------T------TD---   56 (333)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCG-GG------------G-------C------SE---
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCce-ee------------e-------c------cc---
Confidence            356899999999999999999999999999999821110001110 00            0       0      00   


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                              ....             +.....+.+..+...|.+.+.+.|+                   +++.++ |+.+
T Consensus        57 --------~~~~-------------~~~~~~~~~~~~~~~l~~~~~~~gv-------------------~~~~~~-v~~i   95 (333)
T 1vdc_A           57 --------VENF-------------PGFPEGILGVELTDKFRKQSERFGT-------------------TIFTET-VTKV   95 (333)
T ss_dssp             --------ECCS-------------TTCTTCEEHHHHHHHHHHHHHHTTC-------------------EEECCC-CCEE
T ss_pred             --------cccC-------------CCCccCCCHHHHHHHHHHHHHHCCC-------------------EEEEeE-EEEE
Confidence                    0000             0000124567888888888888886                   888887 8888


Q ss_pred             eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      +..++.+.+.+    ++.    ++.+|.||.|+|.++.
T Consensus        96 ~~~~~~~~v~~----~~~----~~~~~~vv~A~G~~~~  125 (333)
T 1vdc_A           96 DFSSKPFKLFT----DSK----AILADAVILAIGAVAK  125 (333)
T ss_dssp             ECSSSSEEEEC----SSE----EEEEEEEEECCCEEEC
T ss_pred             EEcCCEEEEEE----CCc----EEEcCEEEECCCCCcC
Confidence            87777666653    332    7899999999998764

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.07  E-value=1.4e-09  Score=104.49  Aligned_cols=115  Identities=21%  Similarity=0.288  Sum_probs=80.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      +..+||+||||||+|+++|+.|++.|++|+|||+. .+   + +. +..        ...+           ..      
T Consensus         6 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~---g-g~-~~~--------~~~~-----------~~------   54 (325)
T 2q7v_A            6 AHDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MP---G-GQ-IAW--------SEEV-----------EN------   54 (325)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CT---T-GG-GGG--------CSCB-----------CC------
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CC---C-cc-ccc--------cccc-----------cc------
Confidence            35689999999999999999999999999999997 22   1 10 000        0000           00      


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                                 .+     .+     +   ..+++..+.+.+.+.+.+.|+                   +++. .+|+++
T Consensus        55 -----------~~-----~~-----~---~~~~~~~~~~~l~~~~~~~gv-------------------~~~~-~~v~~i   90 (325)
T 2q7v_A           55 -----------FP-----GF-----P---EPIAGMELAQRMHQQAEKFGA-------------------KVEM-DEVQGV   90 (325)
T ss_dssp             -----------ST-----TC-----S---SCBCHHHHHHHHHHHHHHTTC-------------------EEEE-CCEEEE
T ss_pred             -----------CC-----CC-----C---CCCCHHHHHHHHHHHHHHcCC-------------------EEEe-eeEEEE
Confidence                       00     00     0   124566788888888888886                   7776 689998


Q ss_pred             eec--CCc-eEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          201 SAT--DQC-INVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       201 ~~~--~~~-~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                      +..  ++. +.+.+.   +|.    .+.+|.||.|+|..+
T Consensus        91 ~~~~~~~~~~~v~~~---~g~----~~~~~~vv~AtG~~~  123 (325)
T 2q7v_A           91 QHDATSHPYPFTVRG---YNG----EYRAKAVILATGADP  123 (325)
T ss_dssp             EECTTSSSCCEEEEE---SSC----EEEEEEEEECCCEEE
T ss_pred             EeccCCCceEEEEEC---CCC----EEEeCEEEECcCCCc
Confidence            876  443 566655   664    789999999999865

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=99.06  E-value=2.6e-09  Score=111.31  Aligned_cols=64  Identities=11%  Similarity=0.088  Sum_probs=48.0

Q ss_pred             hhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCEEEeec
Q 012845          155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTD  233 (455)
Q Consensus       155 ~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~Ad  233 (455)
                      ..+...|.+.+.+.|+                   +|+.++.|+++..+++.+. |.+....+|.  ...+.++.||.|+
T Consensus       155 ~~l~~~L~~~~~~~gv-------------------~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~--~~~i~A~~VVlAT  213 (621)
T 2h88_A          155 HSLLHTLYGRSLRYDT-------------------SYFVEYFALDLLMENGECRGVIALCIEDGT--IHRFRAKNTVIAT  213 (621)
T ss_dssp             HHHHHHHHHHHTTSCC-------------------EEEETEEEEEEEEETTEEEEEEEEETTTCC--EEEEEEEEEEECC
T ss_pred             HHHHHHHHHHHHhCCC-------------------EEEEceEEEEEEEECCEEEEEEEEEcCCCc--EEEEEcCeEEECC
Confidence            4788889999888776                   9999999999987666543 4443212342  3478999999999


Q ss_pred             CCCchh
Q 012845          234 GAGSTV  239 (455)
Q Consensus       234 G~~S~v  239 (455)
                      |..+.+
T Consensus       214 GG~~~~  219 (621)
T 2h88_A          214 GGYGRT  219 (621)
T ss_dssp             CCCGGG
T ss_pred             Cccccc
Confidence            999864

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=99.06  E-value=1.8e-09  Score=113.21  Aligned_cols=171  Identities=16%  Similarity=0.095  Sum_probs=93.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC------CCCEEEEcCCCCCCCCC--cc-cccC----hhH-HH-------------
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKL------GIKCSVLEKNKAFSTHP--QA-HFIN----NRY-AL-------------   93 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~------g~~V~l~Er~~~~~~~~--~~-~~l~----~~~-~~-------------   93 (455)
                      ..++||||||||+|||++|+.|+++      |.+|+|+||........  .| .+++    ... ..             
T Consensus        20 ~~~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~~s~s~AqG~~gi~a~l~~ds~e~~~~~~~~~~~gl~   99 (662)
T 3gyx_A           20 EHSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLERSGAVAQGLSAINTYLGDNNADDYVRMVRTDLMGLV   99 (662)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTTTCSTTTTCEEEECCCCTTSCHHHHHHHHHHHTTTCC
T ss_pred             eEEcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCCCCcccccCcchheeecCCCCHHHHHHHHHHhcCCCc
Confidence            4579999999999999999999998      99999999986543211  11 1221    100 01             


Q ss_pred             ------HH-HhhhchHHHHHhcCCCcccccceEEeecCCCCccc-----cccCCCccccccccCCccccccchhhHHHHH
Q 012845           94 ------VF-RKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILG-----SVDHMQPQDFEKVVSPVSVAHFSQYKLNKLL  161 (455)
Q Consensus        94 ------~l-~~~~gl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L  161 (455)
                            .+ +..+...+.+...+.+....       ...|....     .+...................++...+.+.|
T Consensus       100 d~~~v~~l~~~a~~~i~~L~~~Gv~f~~~-------~~~G~~~~g~~~~~fg~~~~~gg~~~~r~~~~~~~~G~~i~~~L  172 (662)
T 3gyx_A          100 REDLIYDLGRHVDDSVHLFEEWGLPVWIK-------DEHGHNLDGAQAKAAGKSLRNGDKPVRSGRWQIMINGESYKVIV  172 (662)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTCCBCEE-------CSSSCEECHHHHHHHTCCTTTTCCBCCSSTTCEEEEETSHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcCCCceec-------CCCCccccchhhhccccccccCccccccceecccCCHHHHHHHH
Confidence                  11 01111222333334332110       01111110     0000000000000000001223455788889


Q ss_pred             HHHHHhc--ccccccCCCcccccccccccceEEeccEEEEeeecCC---ceE-EEEEeccCCcceeEEEEeCEEEeecCC
Q 012845          162 LKQLEKL--NFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQ---CIN-VIASFLKEGKCTERNIQCNILIGTDGA  235 (455)
Q Consensus       162 ~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~---~~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~  235 (455)
                      .+.+.+.  |+                   +|+.++.|+++..+++   .+. +......+|.  ...+.++.||.|+|.
T Consensus       173 ~~~a~~~~~gV-------------------~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~--~~~i~Ak~VVLATGG  231 (662)
T 3gyx_A          173 AEAAKNALGQD-------------------RIIERIFIVKLLLDKNTPNRIAGAVGFNLRANE--VHIFKANAMVVACGG  231 (662)
T ss_dssp             HHHHHHHHCTT-------------------TEECSEEECCCEECSSSTTBEEEEEEEESSSSC--EEEEECSEEEECCCC
T ss_pred             HHHHHhcCCCc-------------------EEEEceEEEEEEEeCCccceEEEEEEEEcCCCc--EEEEEeCEEEECCCc
Confidence            9988887  76                   8999999999987765   443 3333112332  347899999999998


Q ss_pred             Cchh
Q 012845          236 GSTV  239 (455)
Q Consensus       236 ~S~v  239 (455)
                      .+.+
T Consensus       232 ~g~~  235 (662)
T 3gyx_A          232 AVNV  235 (662)
T ss_dssp             BCSS
T ss_pred             cccc
Confidence            8853

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.04  E-value=7.7e-10  Score=105.97  Aligned_cols=114  Identities=17%  Similarity=0.288  Sum_probs=79.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      ++++||+||||||+|+++|+.|++.|++|+|||+. .+    .+...         .. .          ..   .    
T Consensus         3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~----gg~~~---------~~-~----------~~---~----   50 (320)
T 1trb_A            3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EK----GGQLT---------TT-T----------EV---E----   50 (320)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-ST----TGGGG---------GC-S----------BC---C----
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC-CC----CceEe---------cc-h----------hh---h----
Confidence            45789999999999999999999999999999964 21    11100         00 0          00   0    


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                                ..             +.....+.+..+.+.+.+.+.+.++                   +++.++ |+.+
T Consensus        51 ----------~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~-v~~i   87 (320)
T 1trb_A           51 ----------NW-------------PGDPNDLTGPLLMERMHEHATKFET-------------------EIIFDH-INKV   87 (320)
T ss_dssp             ----------CS-------------TTCCSSCBHHHHHHHHHHHHHHTTC-------------------EEECCC-EEEE
T ss_pred             ----------hC-------------CCCCCCCCHHHHHHHHHHHHHHCCC-------------------EEEEee-eeEE
Confidence                      00             0000124566788888888888876                   888886 8898


Q ss_pred             eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                      +..++.+.+ ..   ++.    ++.+|.||.|+|..+
T Consensus        88 ~~~~~~~~v-~~---~~~----~~~~~~lv~AtG~~~  116 (320)
T 1trb_A           88 DLQNRPFRL-NG---DNG----EYTCDALIIATGASA  116 (320)
T ss_dssp             ECSSSSEEE-EE---SSC----EEEEEEEEECCCEEE
T ss_pred             EecCCEEEE-Ee---CCC----EEEcCEEEECCCCCc
Confidence            877777766 44   554    789999999999765

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.04  E-value=5.4e-09  Score=106.02  Aligned_cols=62  Identities=18%  Similarity=0.285  Sum_probs=45.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCCCCCC-----cc----------cccChhHHHHHHhhhchHHHH
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFSTHP-----QA----------HFINNRYALVFRKLDGLAEEI  105 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g--~~V~l~Er~~~~~~~~-----~~----------~~l~~~~~~~l~~~~gl~~~l  105 (455)
                      ++||+|||||++||++|+.|+++|  ++|+|||+.+....+.     .+          ....+...++++++ |+.+.+
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~l~~~l-g~~~~~   82 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERGPDSYVARKHILTDLIEAI-GLGEKL   82 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEECSTTCCEESSCCCEETTSTHHHHHHHHT-TCGGGE
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEeeCCEEEecCchhhhcccHHHHHHHHHc-CCcceE
Confidence            579999999999999999999999  9999999987653211     11          11234566777777 765443

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.04  E-value=3e-10  Score=109.83  Aligned_cols=114  Identities=18%  Similarity=0.298  Sum_probs=78.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      +..+||+||||||+|+++|+.|++.|++|+|||+.. +    .+....         .           ....       
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~----gg~~~~---------~-----------~~~~-------   59 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTS-F----GGALMT---------T-----------TDVE-------   59 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSS-C----SCGGGS---------C-----------SCBC-------
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-C----CCceec---------c-----------chhh-------
Confidence            456899999999999999999999999999999652 1    111000         0           0000       


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                                ..             +.....+.+..+...|.+.+.+.|+                   ++++++ |+++
T Consensus        60 ----------~~-------------~~~~~~~~~~~~~~~l~~~~~~~~v-------------------~~~~~~-v~~i   96 (335)
T 2a87_A           60 ----------NY-------------PGFRNGITGPELMDEMREQALRFGA-------------------DLRMED-VESV   96 (335)
T ss_dssp             ----------CS-------------TTCTTCBCHHHHHHHHHHHHHHTTC-------------------EEECCC-EEEE
T ss_pred             ----------hc-------------CCCCCCCCHHHHHHHHHHHHHHcCC-------------------EEEEee-EEEE
Confidence                      00             0000124566788888888888876                   888887 8888


Q ss_pred             eecCCceEE-EEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          201 SATDQCINV-IASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       201 ~~~~~~~~v-~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                      +. ++.+.+ .+.   ++.    ++.+|.||.|+|..+
T Consensus        97 ~~-~~~~~v~~~~---~g~----~~~~d~lviAtG~~~  126 (335)
T 2a87_A           97 SL-HGPLKSVVTA---DGQ----THRARAVILAMGAAA  126 (335)
T ss_dssp             EC-SSSSEEEEET---TSC----EEEEEEEEECCCEEE
T ss_pred             Ee-CCcEEEEEeC---CCC----EEEeCEEEECCCCCc
Confidence            77 555666 443   554    789999999999865

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.03  E-value=2.8e-09  Score=106.68  Aligned_cols=35  Identities=31%  Similarity=0.400  Sum_probs=33.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      +||+|||||++|+++|+.|+++|++|+|||+++.+
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~   36 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERL   36 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            69999999999999999999999999999997655

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.01  E-value=4.8e-10  Score=107.13  Aligned_cols=37  Identities=27%  Similarity=0.406  Sum_probs=33.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +..|||+||||||||+++|+.|+++|++|+|||+...
T Consensus         2 ~~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~   38 (314)
T 4a5l_A            2 SNIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMA   38 (314)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSG
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            3459999999999999999999999999999998653

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.99  E-value=1.7e-08  Score=103.53  Aligned_cols=39  Identities=28%  Similarity=0.456  Sum_probs=35.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      +..+||+|||||++||++|+.|+++|++|+|||+++.+.
T Consensus         2 ~~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~G   40 (520)
T 1s3e_A            2 SNKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVG   40 (520)
T ss_dssp             -CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSB
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            346799999999999999999999999999999988763

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.97  E-value=8.7e-09  Score=104.36  Aligned_cols=31  Identities=29%  Similarity=0.572  Sum_probs=30.4

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      ||+|||||++|+++|+.|++.|.+|+|+||.
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~   31 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR   31 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence            8999999999999999999999999999998

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.96  E-value=3.2e-09  Score=101.18  Aligned_cols=112  Identities=17%  Similarity=0.345  Sum_probs=78.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ++||+||||||+|+++|+.|++.|++|+|+|+..      .|....        .. ++              ..+    
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~------gG~~~~--------~~-~~--------------~~~----   47 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGERF------GGQILD--------TV-DI--------------ENY----   47 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSST------TGGGGG--------CC-EE--------------CCB----
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC------Cceecc--------cc-cc--------------ccc----
Confidence            3799999999999999999999999999998531      111000        00 00              000    


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                            .                .  ....++..+.+.+.+.+.+.|+                   +++.+++|+.++.
T Consensus        48 ------~----------------~--~~~~~~~~~~~~~~~~~~~~~v-------------------~~~~~~~v~~i~~   84 (310)
T 1fl2_A           48 ------I----------------S--VPKTEGQKLAGALKVHVDEYDV-------------------DVIDSQSASKLIP   84 (310)
T ss_dssp             ------T----------------T--BSSEEHHHHHHHHHHHHHTSCE-------------------EEECSCCEEEEEC
T ss_pred             ------c----------------C--cCCCCHHHHHHHHHHHHHHcCC-------------------eEEccCEEEEEEe
Confidence                  0                0  0113456788888888888776                   8999999999976


Q ss_pred             cC---CceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          203 TD---QCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       203 ~~---~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                      +.   +.+.+.+.   +|.    ++.+|.||.|+|..+
T Consensus        85 ~~~~~~~~~v~~~---~g~----~~~~~~lv~AtG~~~  115 (310)
T 1fl2_A           85 AAVEGGLHQIETA---SGA----VLKARSIIVATGAKW  115 (310)
T ss_dssp             CSSTTCCEEEEET---TSC----EEEEEEEEECCCEEE
T ss_pred             cccCCceEEEEEC---CCC----EEEeCEEEECcCCCc
Confidence            43   25666654   554    789999999999865

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.89  E-value=3.5e-08  Score=103.69  Aligned_cols=38  Identities=26%  Similarity=0.309  Sum_probs=34.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHH---h-CCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLT---K-LGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La---~-~g~~V~l~Er~~~~   78 (455)
                      ..++||||||||+|||++|+.|+   + .|.+|+|+||....
T Consensus        20 ~~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~~   61 (643)
T 1jnr_A           20 VVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVE   61 (643)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTT
T ss_pred             eccCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCCC
Confidence            35689999999999999999999   6 89999999998753

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.88  E-value=1.5e-08  Score=102.98  Aligned_cols=34  Identities=21%  Similarity=0.378  Sum_probs=32.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      .++||+|||||++|+++|+.|+++|++|+||||.
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~   58 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGALGKRVAIAEEY   58 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeCC
Confidence            4699999999999999999999999999999994

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.87  E-value=5.7e-09  Score=106.09  Aligned_cols=38  Identities=26%  Similarity=0.538  Sum_probs=34.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      +.++||+|||||++|+++|+.|++.|++|+|||+.+..
T Consensus         4 ~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~   41 (482)
T 1ojt_A            4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL   41 (482)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            45799999999999999999999999999999997654

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.87  E-value=3.2e-09  Score=107.84  Aligned_cols=38  Identities=32%  Similarity=0.576  Sum_probs=34.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      +.++||+||||||+|+++|+.|++.|++|+|||+.+.+
T Consensus         3 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~   40 (478)
T 1v59_A            3 NKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL   40 (478)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCc
Confidence            45689999999999999999999999999999997554

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.87  E-value=1e-08  Score=103.67  Aligned_cols=33  Identities=33%  Similarity=0.623  Sum_probs=32.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      ++||+||||||+|+++|+.|++.|++|+|||+.
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~   35 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK   35 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            589999999999999999999999999999997

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.86  E-value=1.2e-08  Score=97.45  Aligned_cols=36  Identities=25%  Similarity=0.553  Sum_probs=33.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      .++|||+||||||||+++|+.|++.|++|+||||..
T Consensus         4 e~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~   39 (312)
T 4gcm_A            4 EIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGI   39 (312)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            457999999999999999999999999999999853

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.86  E-value=7.1e-08  Score=102.94  Aligned_cols=39  Identities=38%  Similarity=0.618  Sum_probs=35.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST   80 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~   80 (455)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+.+.+..
T Consensus       335 ~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~gg  373 (776)
T 4gut_A          335 HNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGG  373 (776)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceec
Confidence            468999999999999999999999999999999876643

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.85  E-value=4.2e-09  Score=108.10  Aligned_cols=114  Identities=16%  Similarity=0.320  Sum_probs=80.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      +..+||+||||||+|+++|+.|++.|++|+|+|+..      .|....        .. ++           ..+     
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~------GG~~~~--------~~-~~-----------~~~-----  258 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERF------GGQVLD--------TV-DI-----------ENY-----  258 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSST------TGGGTT--------CS-CB-----------CCB-----
T ss_pred             cCcccEEEECCcHHHHHHHHHHHhCCCeEEEEECCC------CCcccc--------cc-cc-----------ccc-----
Confidence            457899999999999999999999999999998631      111000        00 10           000     


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                              .                .  ........+...|.+.+.+.|+                   +++.+++|+.+
T Consensus       259 --------~----------------~--~~~~~~~~l~~~l~~~~~~~gv-------------------~v~~~~~v~~i  293 (521)
T 1hyu_A          259 --------I----------------S--VPKTEGQKLAGALKAHVSDYDV-------------------DVIDSQSASKL  293 (521)
T ss_dssp             --------T----------------T--BSSBCHHHHHHHHHHHHHTSCE-------------------EEECSCCEEEE
T ss_pred             --------C----------------C--CCCCCHHHHHHHHHHHHHHcCC-------------------EEEcCCEEEEE
Confidence                    0                0  0113466788888888888886                   89999999999


Q ss_pred             eecC---CceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          201 SATD---QCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       201 ~~~~---~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                      +.+.   +.+.|.+.   +|.    ++.+|.||.|+|..+
T Consensus       294 ~~~~~~~~~~~V~~~---~g~----~~~~d~vVlAtG~~~  326 (521)
T 1hyu_A          294 VPAATEGGLHQIETA---SGA----VLKARSIIIATGAKW  326 (521)
T ss_dssp             ECCSSTTSCEEEEET---TSC----EEEEEEEEECCCEEE
T ss_pred             EeccCCCceEEEEEC---CCC----EEEcCEEEECCCCCc
Confidence            7542   25666655   664    789999999999765

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=98.85  E-value=6.5e-09  Score=105.37  Aligned_cols=36  Identities=25%  Similarity=0.419  Sum_probs=33.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKAFS   79 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~~~~   79 (455)
                      +||+|||||++||++|+.|+++|.  +|+|||+++.+.
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~G   40 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLG   40 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSB
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCC
Confidence            589999999999999999999999  999999987653

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.80  E-value=1e-08  Score=104.68  Aligned_cols=65  Identities=9%  Similarity=0.048  Sum_probs=50.4

Q ss_pred             cccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecC--------CceEEEEEeccCCccee
Q 012845          150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD--------QCINVIASFLKEGKCTE  221 (455)
Q Consensus       150 ~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~--------~~~~v~~~~~~~g~~~~  221 (455)
                      ....|.++.++|...+++.+.                   .|+++++|++++..+        +.+.|++...+  ++..
T Consensus       140 ~~p~r~E~~~Yl~~~A~~~~~-------------------~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~--~g~~  198 (501)
T 4b63_A          140 FLPARLEFEDYMRWCAQQFSD-------------------VVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVE--TGEI  198 (501)
T ss_dssp             SCCBHHHHHHHHHHHHHTTGG-------------------GEEESEEEEEEEEECSSTTSSCBCEEEEEEEETT--TCCE
T ss_pred             CCCCHHHHHHHHHHHHHHcCC-------------------ceEcceEEEeeccccccccccccceEEEEEecCC--CceE
Confidence            346799999999999998764                   799999999997643        24777776322  3345


Q ss_pred             EEEEeCEEEeecCC
Q 012845          222 RNIQCNILIGTDGA  235 (455)
Q Consensus       222 ~~~~~d~vV~AdG~  235 (455)
                      .++.++.||.|+|.
T Consensus       199 ~~~~ar~vVlatG~  212 (501)
T 4b63_A          199 SARRTRKVVIAIGG  212 (501)
T ss_dssp             EEEEEEEEEECCCC
T ss_pred             EEEEeCEEEECcCC
Confidence            57899999999994

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.77  E-value=3.4e-08  Score=94.03  Aligned_cols=111  Identities=19%  Similarity=0.273  Sum_probs=76.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEE-EcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSV-LEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l-~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      ..+||+|||||++|+++|+.|+++|++|+| +||. .+    .|.....        . .           ...+     
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~-~~----gG~~~~~--------~-~-----------~~~~-----   52 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKG-MP----GGQITSS--------S-E-----------IENY-----   52 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSS-ST----TGGGGGC--------S-C-----------BCCS-----
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC-CC----Cceeeee--------c-e-----------eccC-----
Confidence            458999999999999999999999999999 9993 32    1110000        0 0           0000     


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                                               +.....+....+...+.+.+.+.++                   .++.+ +|+++
T Consensus        53 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~v-------------------~~~~~-~v~~i   87 (315)
T 3r9u_A           53 -------------------------PGVAQVMDGISFMAPWSEQCMRFGL-------------------KHEMV-GVEQI   87 (315)
T ss_dssp             -------------------------TTCCSCBCHHHHHHHHHHHHTTTCC-------------------EEECC-CEEEE
T ss_pred             -------------------------CCCCCCCCHHHHHHHHHHHHHHcCc-------------------EEEEE-EEEEE
Confidence                                     0001124567888889999888886                   78887 88888


Q ss_pred             eecC--CceEEEEEeccCCcceeEEEEeCEEEeecCC
Q 012845          201 SATD--QCINVIASFLKEGKCTERNIQCNILIGTDGA  235 (455)
Q Consensus       201 ~~~~--~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~  235 (455)
                       .++  +.+.+.+.   .+.    ++.+|.||.|+|.
T Consensus        88 -~~~~~~~~~v~~~---~~~----~~~~d~lvlAtG~  116 (315)
T 3r9u_A           88 -LKNSDGSFTIKLE---GGK----TELAKAVIVCTGS  116 (315)
T ss_dssp             -EECTTSCEEEEET---TSC----EEEEEEEEECCCE
T ss_pred             -ecCCCCcEEEEEe---cCC----EEEeCEEEEeeCC
Confidence             655  56664333   332    6789999999997

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.76  E-value=1.4e-08  Score=102.79  Aligned_cols=38  Identities=37%  Similarity=0.589  Sum_probs=34.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      +.++||+|||||++|+++|+.|++.|++|+|||+.+..
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~   41 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGAL   41 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            34689999999999999999999999999999998654

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.73  E-value=2.7e-08  Score=100.59  Aligned_cols=38  Identities=18%  Similarity=0.254  Sum_probs=34.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ++++||+||||||+|+++|+.|++.|++|+||||++..
T Consensus         2 ~~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~   39 (466)
T 3l8k_A            2 SLKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGEL   39 (466)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSS
T ss_pred             CccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCC
Confidence            45799999999999999999999999999999987654

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.72  E-value=2.8e-08  Score=100.73  Aligned_cols=62  Identities=23%  Similarity=0.322  Sum_probs=46.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCccc-------------cc--ChhHHHHHHhhhchHHH
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAH-------------FI--NNRYALVFRKLDGLAEE  104 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~-------------~l--~~~~~~~l~~~~gl~~~  104 (455)
                      .++||+|||||++||++|+.|+++|++|+|||+++.+..+....             ..  .+...++++++ |+.+.
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~~~g~~~~~~~~~~~~~~~~~~-gl~~~   91 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPATRALAAAL-NLEGR   91 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETTEEEESSCCCEETTCHHHHHHHHHT-TCGGG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeeccCCeeeecChhhhhhhhHHHHHHHHHc-CCcce
Confidence            46899999999999999999999999999999998764322111             11  35667788887 77543

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.70  E-value=2.3e-09  Score=104.22  Aligned_cols=35  Identities=20%  Similarity=0.356  Sum_probs=32.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCC------CCEEEEcCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLG------IKCSVLEKNKAF   78 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g------~~V~l~Er~~~~   78 (455)
                      +||+|||||++|+++|+.|+++|      .+|+|+|+....
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~~   41 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTP   41 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCGG
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCCC
Confidence            38999999999999999999998      999999998643

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.68  E-value=8.9e-08  Score=97.50  Aligned_cols=38  Identities=32%  Similarity=0.640  Sum_probs=33.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ++++||+||||||+|+++|+.|++.|++|+||||.+..
T Consensus        23 m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~   60 (491)
T 3urh_A           23 MMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTY   60 (491)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            45799999999999999999999999999999987654

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.67  E-value=4.4e-08  Score=98.04  Aligned_cols=36  Identities=25%  Similarity=0.329  Sum_probs=32.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA   77 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~~   77 (455)
                      +++||+|||||++|+++|..|++.|+  +|+|||+.+.
T Consensus         3 ~~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~   40 (431)
T 1q1r_A            3 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATV   40 (431)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCS
T ss_pred             CCCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCC
Confidence            46899999999999999999999998  6999998754

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.63  E-value=5e-08  Score=96.90  Aligned_cols=34  Identities=21%  Similarity=0.277  Sum_probs=31.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHh---CCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTK---LGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~---~g~~V~l~Er~~~   77 (455)
                      .||+|||||++|+++|+.|++   .|++|+|||+++.
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~   38 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRF   38 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCC
Confidence            379999999999999999999   8999999999873

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.62  E-value=1.1e-07  Score=93.69  Aligned_cols=38  Identities=21%  Similarity=0.330  Sum_probs=34.0

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      .++.+|+|||||+||+++|..|++.+.+|+|||+.+..
T Consensus         7 ~~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~   44 (385)
T 3klj_A            7 HKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYL   44 (385)
T ss_dssp             -CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSC
T ss_pred             cCCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence            45789999999999999999998889999999998764

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.61  E-value=1.5e-07  Score=98.07  Aligned_cols=37  Identities=16%  Similarity=0.251  Sum_probs=34.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~   78 (455)
                      +..||+|||||+||+++|..|++.  |++|+|||+.+..
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~   73 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYI   73 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCS
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCc
Confidence            457999999999999999999998  8999999998765

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.60  E-value=9.4e-08  Score=95.13  Aligned_cols=38  Identities=29%  Similarity=0.406  Sum_probs=34.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCC--EEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIK--CSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~--V~l~Er~~~~   78 (455)
                      ++++||+|||||++|+++|..|+++|++  |+|+|+.+.+
T Consensus         7 ~~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~   46 (415)
T 3lxd_A            7 AERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEI   46 (415)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSC
T ss_pred             CCCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCC
Confidence            3568999999999999999999999987  9999998754

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.59  E-value=7.5e-08  Score=96.98  Aligned_cols=35  Identities=23%  Similarity=0.390  Sum_probs=32.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~   78 (455)
                      +||+|||||++|+++|..|++.  |.+|+|||+.+..
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~   39 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATV   39 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            5899999999999999999998  8999999998765

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.59  E-value=3.3e-07  Score=92.28  Aligned_cols=34  Identities=41%  Similarity=0.641  Sum_probs=32.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      .++||+|||||++|+++|..|++.|++|+|||+.
T Consensus         2 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~   35 (455)
T 1ebd_A            2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (455)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            3589999999999999999999999999999997

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.57  E-value=8.9e-08  Score=96.99  Aligned_cols=36  Identities=14%  Similarity=0.330  Sum_probs=31.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~   78 (455)
                      ++||+|||||++|+++|..|++.  |++|+|||+.+..
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~   40 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRI   40 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcc
Confidence            46899999999999999999999  8999999998765

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.57  E-value=1.3e-07  Score=95.59  Aligned_cols=36  Identities=39%  Similarity=0.636  Sum_probs=33.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ++||+|||||++|+++|+.|++.|++|+|||+.+.+
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~   37 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGAL   37 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            479999999999999999999999999999998654

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.57  E-value=1.1e-07  Score=96.67  Aligned_cols=37  Identities=16%  Similarity=0.138  Sum_probs=33.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCC---CCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLG---IKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g---~~V~l~Er~~~~   78 (455)
                      +++||+|||||++|+++|..|++.|   .+|+|||+.+..
T Consensus        34 m~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~~   73 (490)
T 2bc0_A           34 WGSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNI   73 (490)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCC
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCCC
Confidence            4689999999999999999999988   999999998754

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.56  E-value=1.3e-07  Score=95.80  Aligned_cols=38  Identities=34%  Similarity=0.573  Sum_probs=34.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      +.++||+|||||++|+++|..|++.|++|+|||+.+.+
T Consensus         4 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~   41 (474)
T 1zmd_A            4 PIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETL   41 (474)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            35689999999999999999999999999999998654

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.55  E-value=8.6e-07  Score=90.78  Aligned_cols=36  Identities=25%  Similarity=0.311  Sum_probs=33.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +.++||+||||||+|+++|+.|++.|.+|+||||.+
T Consensus        30 ~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~   65 (519)
T 3qfa_A           30 SYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVT   65 (519)
T ss_dssp             SCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence            457999999999999999999999999999999975

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.54  E-value=3.3e-07  Score=92.87  Aligned_cols=37  Identities=38%  Similarity=0.624  Sum_probs=34.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      +++||+|||||++|+++|+.|++.|++|+||||.+.+
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~   38 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGK   38 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCcc
Confidence            4699999999999999999999999999999998744

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.53  E-value=1.6e-06  Score=88.96  Aligned_cols=38  Identities=16%  Similarity=0.266  Sum_probs=34.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      +.++||+|||||++|+++|+.|++.|++|+|||+.+..
T Consensus        41 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~   78 (523)
T 1mo9_A           41 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFL   78 (523)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            45689999999999999999999999999999998643

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.52  E-value=2.1e-07  Score=93.74  Aligned_cols=35  Identities=17%  Similarity=0.197  Sum_probs=32.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~   78 (455)
                      +||+|||||++|+++|..|++.  |.+|+|||+.+..
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~   37 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNI   37 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            4899999999999999999998  9999999998754

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.51  E-value=6.7e-08  Score=96.91  Aligned_cols=34  Identities=24%  Similarity=0.413  Sum_probs=31.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHh---CCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTK---LGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~---~g~~V~l~Er~~~   77 (455)
                      .||+|||||++|+++|..|++   .|++|+|||+.+.
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~   41 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDY   41 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCC
Confidence            689999999999999999999   8999999999874

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.51  E-value=1.9e-07  Score=94.63  Aligned_cols=35  Identities=29%  Similarity=0.453  Sum_probs=32.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      +.++||+||||||+|+++|+.|++.|++|+||||.
T Consensus        18 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~   52 (478)
T 3dk9_A           18 VASYDYLVIGGGSGGLASARRAAELGARAAVVESH   52 (478)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            45799999999999999999999999999999976

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.49  E-value=9.4e-07  Score=89.59  Aligned_cols=36  Identities=19%  Similarity=0.294  Sum_probs=33.0

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +.++||+|||||++|+++|+.|++.|.+|+||||+.
T Consensus         9 ~~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~   44 (479)
T 2hqm_A            9 TKHYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA   44 (479)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSC
T ss_pred             cccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            357899999999999999999999999999999973

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.49  E-value=1.8e-07  Score=94.06  Aligned_cols=36  Identities=22%  Similarity=0.405  Sum_probs=33.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~   78 (455)
                      .+||+|||||++|+++|..|++.  |++|+|||+.+..
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~   40 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWV   40 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCcc
Confidence            47999999999999999999998  8899999998754

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.49  E-value=1.7e-07  Score=94.72  Aligned_cols=33  Identities=24%  Similarity=0.391  Sum_probs=31.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEK   74 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er   74 (455)
                      .++||+||||||+|+++|+.|+++|++|+||||
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk   36 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE   36 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEEES
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC
Confidence            469999999999999999999999999999999

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.48  E-value=2.9e-07  Score=95.41  Aligned_cols=35  Identities=17%  Similarity=0.241  Sum_probs=32.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~   78 (455)
                      .||+|||||+||+++|..|++.  |++|+|||+.+..
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~   38 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYV   38 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCc
Confidence            4799999999999999999998  8899999998765

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.48  E-value=7.3e-08  Score=98.46  Aligned_cols=40  Identities=30%  Similarity=0.524  Sum_probs=36.1

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCCC
Q 012845           40 NEAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAFS   79 (455)
Q Consensus        40 ~~~~~dVvIVGgG~aGl~~A~~La~~-g~~V~l~Er~~~~~   79 (455)
                      +.+++||+|||||++||++|+.|+++ |++|+|||+++.+.
T Consensus         7 p~~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~G   47 (513)
T 4gde_A            7 PDISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPG   47 (513)
T ss_dssp             CSEEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCC
T ss_pred             CCCCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCc
Confidence            35679999999999999999999985 99999999998764

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.48  E-value=3.6e-07  Score=92.06  Aligned_cols=35  Identities=46%  Similarity=0.761  Sum_probs=32.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      +||+||||||+|+++|+.|++.|++|+|||+.+..
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~   36 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKAL   36 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            79999999999999999999999999999998654

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.47  E-value=3.9e-07  Score=89.09  Aligned_cols=36  Identities=31%  Similarity=0.421  Sum_probs=31.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      .-.||+|||||+||+++|..|++.| +|+|||+.+..
T Consensus         7 ~~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~   42 (367)
T 1xhc_A            7 HGSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVP   42 (367)
T ss_dssp             --CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSC
T ss_pred             CCCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCC
Confidence            3479999999999999999999999 99999998754

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.47  E-value=3.9e-07  Score=92.41  Aligned_cols=35  Identities=17%  Similarity=0.419  Sum_probs=32.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~   78 (455)
                      +||+|||||++|+++|..|++.  |.+|+|||+.+..
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~   73 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIY   73 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCC
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            5999999999999999999996  8999999998754

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.46  E-value=3.5e-07  Score=90.62  Aligned_cols=35  Identities=26%  Similarity=0.483  Sum_probs=32.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKAF   78 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~~~   78 (455)
                      .||+|||||++|+++|..|++.|+  +|+|||+.+..
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~   38 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHL   38 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSS
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCC
Confidence            589999999999999999999998  89999998743

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.46  E-value=6.9e-07  Score=90.29  Aligned_cols=35  Identities=20%  Similarity=0.468  Sum_probs=33.0

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      +.++||+|||||++|+++|+.|++.|++|+|||+.
T Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~   36 (467)
T 1zk7_A            2 EPPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG   36 (467)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            45789999999999999999999999999999987

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.46  E-value=3.4e-07  Score=91.96  Aligned_cols=35  Identities=20%  Similarity=0.228  Sum_probs=32.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~   78 (455)
                      +||+|||||++|+++|..|++.  |.+|+|||+.+..
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~   37 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCcc
Confidence            3899999999999999999998  9999999998754

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.46  E-value=3e-06  Score=88.48  Aligned_cols=39  Identities=28%  Similarity=0.442  Sum_probs=34.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      +..+||+|||||++|+++|+.|+++|++|+|+|+.+...
T Consensus        44 ~~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~g   82 (623)
T 3pl8_A           44 DIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDS   82 (623)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS
T ss_pred             cccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCC
Confidence            457999999999999999999999999999999987654

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.44  E-value=1e-06  Score=86.68  Aligned_cols=108  Identities=19%  Similarity=0.284  Sum_probs=81.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...                                         
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-----------------------------------------  183 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPG-----------------------------------------  183 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhc-----------------------------------------
Confidence            468999999999999999999999999999987653110                                         


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                   .....+.+.|.+.+++.|+                   +++.+++|++++.
T Consensus       184 -----------------------------~~~~~~~~~l~~~l~~~gv-------------------~i~~~~~v~~i~~  215 (384)
T 2v3a_A          184 -----------------------------LLHPAAAKAVQAGLEGLGV-------------------RFHLGPVLASLKK  215 (384)
T ss_dssp             -----------------------------TSCHHHHHHHHHHHHTTTC-------------------EEEESCCEEEEEE
T ss_pred             -----------------------------ccCHHHHHHHHHHHHHcCC-------------------EEEeCCEEEEEEe
Confidence                                         0012445566777777786                   9999999999988


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh--hhhcCCC
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV--RKLVGID  246 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v--r~~l~~~  246 (455)
                      +++.+.+.+.   +|.    ++.+|.||.|+|..+..  -+.++..
T Consensus       216 ~~~~~~v~~~---~g~----~i~~d~vv~a~G~~p~~~l~~~~g~~  254 (384)
T 2v3a_A          216 AGEGLEAHLS---DGE----VIPCDLVVSAVGLRPRTELAFAAGLA  254 (384)
T ss_dssp             ETTEEEEEET---TSC----EEEESEEEECSCEEECCHHHHHTTCC
T ss_pred             cCCEEEEEEC---CCC----EEECCEEEECcCCCcCHHHHHHCCCC
Confidence            7776666655   664    78999999999987653  3444543

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.43  E-value=2.8e-07  Score=91.58  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=32.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCC--EEEEcCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIK--CSVLEKNKAF   78 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~--V~l~Er~~~~   78 (455)
                      .+|+|||||+||+++|..|++.|++  |+|||+.+..
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~   39 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHL   39 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSS
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCC
Confidence            4899999999999999999999988  9999998754

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.43  E-value=1.9e-06  Score=91.36  Aligned_cols=38  Identities=34%  Similarity=0.484  Sum_probs=35.0

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..++||+|||||++|+++|+.|+++|++|+|||+.+..
T Consensus       389 ~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~  426 (690)
T 3k30_A          389 ESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDL  426 (690)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             cccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            45689999999999999999999999999999998754

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.42  E-value=5.4e-07  Score=89.39  Aligned_cols=38  Identities=21%  Similarity=0.361  Sum_probs=33.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCC--EEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIK--CSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~--V~l~Er~~~~   78 (455)
                      .+++||+|||||++|+++|..|++.|++  |+|||+.+..
T Consensus         5 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~   44 (408)
T 2gqw_A            5 ALKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAER   44 (408)
T ss_dssp             -CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSC
T ss_pred             CCCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCC
Confidence            3568999999999999999999999984  9999998653

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.41  E-value=1.2e-07  Score=96.53  Aligned_cols=35  Identities=26%  Similarity=0.259  Sum_probs=32.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      .++||+||||||+|+++|+.|++.|++|+|+||.+
T Consensus         7 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~   41 (492)
T 3ic9_A            7 INVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA   41 (492)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            46999999999999999999999999999999864

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.40  E-value=1.2e-06  Score=88.06  Aligned_cols=100  Identities=18%  Similarity=0.298  Sum_probs=77.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+                   .+                     
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~-------------------~~---------------------  206 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILP-------------------TM---------------------  206 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT-------------------TS---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCcccc-------------------cc---------------------
Confidence            46899999999999999999999999999998765310                   00                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                     ...+.+.|.+.+++.|+                   +++.+++|++++.
T Consensus       207 -------------------------------~~~~~~~l~~~l~~~Gv-------------------~i~~~~~V~~i~~  236 (455)
T 2yqu_A          207 -------------------------------DLEVSRAAERVFKKQGL-------------------TIRTGVRVTAVVP  236 (455)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHHTC-------------------EEECSCCEEEEEE
T ss_pred             -------------------------------CHHHHHHHHHHHHHCCC-------------------EEEECCEEEEEEE
Confidence                                           01344445666677776                   9999999999998


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      +++.+.+.+.   +|.    ++.+|.||.|+|..+..
T Consensus       237 ~~~~v~v~~~---~g~----~i~~D~vv~A~G~~p~~  266 (455)
T 2yqu_A          237 EAKGARVELE---GGE----VLEADRVLVAVGRRPYT  266 (455)
T ss_dssp             ETTEEEEEET---TSC----EEEESEEEECSCEEECC
T ss_pred             eCCEEEEEEC---CCe----EEEcCEEEECcCCCcCC
Confidence            7776666554   554    78999999999987754

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.40  E-value=8.6e-07  Score=90.35  Aligned_cols=34  Identities=21%  Similarity=0.488  Sum_probs=32.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~---g~~V~l~Er~~   76 (455)
                      ++||+|||||++|+++|+.|++.   |++|+|||+.+
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~   38 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   38 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC
Confidence            48999999999999999999999   99999999976

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.39  E-value=7.4e-07  Score=89.97  Aligned_cols=35  Identities=26%  Similarity=0.525  Sum_probs=33.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      .++||+|||||++|+++|..|++.|++|+|||+.+
T Consensus         5 ~~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~   39 (464)
T 2eq6_A            5 KTYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE   39 (464)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            36899999999999999999999999999999976

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.38  E-value=1.1e-06  Score=88.57  Aligned_cols=35  Identities=17%  Similarity=0.401  Sum_probs=33.0

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      +.++||+|||||++|+++|..|++.|++|+|||+.
T Consensus         2 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~   36 (463)
T 2r9z_A            2 TQHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK   36 (463)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC
Confidence            35689999999999999999999999999999987

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.36  E-value=5.8e-07  Score=91.63  Aligned_cols=34  Identities=21%  Similarity=0.453  Sum_probs=32.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ++||+|||||++|+++|..|++.|.+|+|||+..
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   35 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   35 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            4899999999999999999999999999999974

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.35  E-value=8.8e-07  Score=87.10  Aligned_cols=36  Identities=22%  Similarity=0.378  Sum_probs=31.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNK   76 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g--~~V~l~Er~~   76 (455)
                      +.++||+|||||++|+++|..|++.|  .+|+|+|++.
T Consensus         2 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~   39 (384)
T 2v3a_A            2 SERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD   39 (384)
T ss_dssp             --CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC
T ss_pred             CCCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            34689999999999999999999998  5699999875

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.35  E-value=2.3e-06  Score=86.92  Aligned_cols=36  Identities=25%  Similarity=0.405  Sum_probs=33.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ..++||+||||||+|+++|+.|++.|.+|+||||.+
T Consensus         4 ~~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~   39 (488)
T 3dgz_A            4 QQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVE   39 (488)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecc
Confidence            357999999999999999999999999999999854

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.35  E-value=2.8e-07  Score=88.53  Aligned_cols=38  Identities=37%  Similarity=0.541  Sum_probs=33.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHh--CCCCEEEEcCCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTK--LGIKCSVLEKNKAFS   79 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~--~g~~V~l~Er~~~~~   79 (455)
                      ..+||+|||||||||++|+.|++  .|++|+||||.+.+.
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~G  103 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG  103 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCC
Confidence            35799999999999999999975  599999999987764

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.35  E-value=1.9e-06  Score=86.28  Aligned_cols=35  Identities=20%  Similarity=0.350  Sum_probs=30.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAF   78 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g--~~V~l~Er~~~~   78 (455)
                      ++|+|||||+||+++|..|++.|  .+|+|||+.+..
T Consensus         1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~   37 (437)
T 4eqs_A            1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM   37 (437)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence            47999999999999999999988  569999997643

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.35  E-value=3.9e-07  Score=91.70  Aligned_cols=40  Identities=25%  Similarity=0.370  Sum_probs=36.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST   80 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~   80 (455)
                      +.++||+|||||++||++|+.|+++|++|+|+|+++.+..
T Consensus         9 ~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG   48 (453)
T 2bcg_G            9 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGG   48 (453)
T ss_dssp             CCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCc
Confidence            4578999999999999999999999999999999987753

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.34  E-value=3.6e-06  Score=86.27  Aligned_cols=35  Identities=17%  Similarity=0.316  Sum_probs=33.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +|||+||||||+|+.+|+.+++.|.+|.|+|+...
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~   76 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKP   76 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            59999999999999999999999999999998764

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.33  E-value=3e-06  Score=85.32  Aligned_cols=34  Identities=35%  Similarity=0.578  Sum_probs=32.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      .++||+|||||++|+++|..|++.|++|+|||+.
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~   37 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEccC
Confidence            5689999999999999999999999999999983

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.33  E-value=3.5e-07  Score=91.44  Aligned_cols=34  Identities=21%  Similarity=0.365  Sum_probs=30.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g--~~V~l~Er~~~   77 (455)
                      .+|||||||+||+++|..|++.+  ++|+|||+++.
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~   38 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPY   38 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSE
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCC
Confidence            36999999999999999999875  78999998764

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.31  E-value=5.8e-06  Score=83.80  Aligned_cols=35  Identities=17%  Similarity=0.270  Sum_probs=32.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      +.++||+||||||+|+++|+.|++.|++|+||||.
T Consensus         7 ~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~   41 (483)
T 3dgh_A            7 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFV   41 (483)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEec
Confidence            35799999999999999999999999999999964

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.31  E-value=2e-06  Score=83.09  Aligned_cols=34  Identities=29%  Similarity=0.398  Sum_probs=32.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +||+|||||+||+.+|+.|++.|.+|+|+|+++.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~   35 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPK   35 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            5899999999999999999999999999999873

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.30  E-value=1.6e-06  Score=88.17  Aligned_cols=34  Identities=21%  Similarity=0.383  Sum_probs=31.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHh-CCCCEEEEcC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTK-LGIKCSVLEK   74 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~-~g~~V~l~Er   74 (455)
                      +.++||+|||||++|+++|+.|++ .|++|+|||+
T Consensus         5 ~~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~   39 (495)
T 2wpf_A            5 SKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDV   39 (495)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             ccccCEEEECCChhHHHHHHHHHHhcCCeEEEEec
Confidence            457999999999999999999999 9999999994

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.29  E-value=6e-07  Score=91.36  Aligned_cols=37  Identities=27%  Similarity=0.539  Sum_probs=33.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..++||+|||||++|+++|+.|+++ ++|+|||+.+.+
T Consensus       106 ~~~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~  142 (493)
T 1y56_A          106 RVVVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWL  142 (493)
T ss_dssp             EEEESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSS
T ss_pred             cccCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCC
Confidence            3468999999999999999999999 999999998764

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.29  E-value=6e-06  Score=83.26  Aligned_cols=103  Identities=18%  Similarity=0.277  Sum_probs=78.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+                   .+                     
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------~~---------------------  208 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP-------------------QG---------------------  208 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-------------------TS---------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcccc-------------------cc---------------------
Confidence            46899999999999999999999999999998765411                   00                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                     ...+.+.|.+.+++.|+                   +++.+++|++++.
T Consensus       209 -------------------------------~~~~~~~l~~~l~~~gV-------------------~i~~~~~v~~i~~  238 (464)
T 2eq6_A          209 -------------------------------DPETAALLRRALEKEGI-------------------RVRTKTKAVGYEK  238 (464)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHTTC-------------------EEECSEEEEEEEE
T ss_pred             -------------------------------CHHHHHHHHHHHHhcCC-------------------EEEcCCEEEEEEE
Confidence                                           01344556677777786                   9999999999988


Q ss_pred             cCCceEEEEEeccC--CcceeEEEEeCEEEeecCCCchh
Q 012845          203 TDQCINVIASFLKE--GKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       203 ~~~~~~v~~~~~~~--g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      +++.+.+.+.  ++  |+  ..++.+|.||.|+|..+..
T Consensus       239 ~~~~~~v~~~--~~~~g~--~~~i~~D~vv~a~G~~p~~  273 (464)
T 2eq6_A          239 KKDGLHVRLE--PAEGGE--GEEVVVDKVLVAVGRKPRT  273 (464)
T ss_dssp             ETTEEEEEEE--ETTCCS--CEEEEESEEEECSCEEESC
T ss_pred             eCCEEEEEEe--ecCCCc--eeEEEcCEEEECCCcccCC
Confidence            7766656554  13  32  2368999999999977654

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.29  E-value=8.6e-07  Score=89.06  Aligned_cols=40  Identities=35%  Similarity=0.505  Sum_probs=36.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST   80 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~   80 (455)
                      +.++||+|||||++||++|+.|++.|++|+|||+++.+..
T Consensus         3 ~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG   42 (453)
T 2yg5_A            3 TLQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGG   42 (453)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCC
Confidence            4578999999999999999999999999999999877643

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.27  E-value=9.4e-07  Score=90.08  Aligned_cols=62  Identities=24%  Similarity=0.383  Sum_probs=47.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCc------------cccc---ChhHHHHHHhhhchHH
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQ------------AHFI---NNRYALVFRKLDGLAE  103 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~------------~~~l---~~~~~~~l~~~~gl~~  103 (455)
                      ...+||+|||||++||++|+.|+++|++|+|||+++.+..+..            +..+   .+...++++++ |+.+
T Consensus        11 ~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l-gl~~   87 (504)
T 1sez_A           11 SSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSL-GLRE   87 (504)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCCCSHHHHHHHHHT-TCGG
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCeEEecCCcccccCcHHHHHHHHHc-CCcc
Confidence            4568999999999999999999999999999999987643211            1122   25677788888 7754

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.25  E-value=4.2e-06  Score=84.05  Aligned_cols=100  Identities=18%  Similarity=0.206  Sum_probs=76.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+..                   .+                     
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------~~---------------------  206 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP-------------------SF---------------------  206 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-------------------TS---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhh-------------------hh---------------------
Confidence            46899999999999999999999999999998764310                   00                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                    + ..+.+.|.+.+++.|+                   +++.+++|++++.
T Consensus       207 ------------------------------~-~~~~~~l~~~l~~~Gv-------------------~i~~~~~v~~i~~  236 (450)
T 1ges_A          207 ------------------------------D-PMISETLVEVMNAEGP-------------------QLHTNAIPKAVVK  236 (450)
T ss_dssp             ------------------------------C-HHHHHHHHHHHHHHSC-------------------EEECSCCEEEEEE
T ss_pred             ------------------------------h-HHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEEE
Confidence                                          0 1244456666777786                   9999999999987


Q ss_pred             cCCc-eEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          203 TDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       203 ~~~~-~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      ++++ +.+.+.   +|+    ++.+|.||.|+|..+..
T Consensus       237 ~~~~~~~v~~~---~g~----~i~~D~vv~a~G~~p~~  267 (450)
T 1ges_A          237 NTDGSLTLELE---DGR----SETVDCLIWAIGREPAN  267 (450)
T ss_dssp             CTTSCEEEEET---TSC----EEEESEEEECSCEEESC
T ss_pred             eCCcEEEEEEC---CCc----EEEcCEEEECCCCCcCC
Confidence            6544 556554   664    78999999999987654

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.25  E-value=1.1e-06  Score=89.33  Aligned_cols=33  Identities=18%  Similarity=0.287  Sum_probs=31.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHh-CCCCEEEEcC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTK-LGIKCSVLEK   74 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~-~g~~V~l~Er   74 (455)
                      .++||+||||||+|+++|+.|++ .|.+|+|||+
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~   35 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDL   35 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcCCEEEEEec
Confidence            35899999999999999999999 9999999994

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.24  E-value=7.7e-07  Score=88.02  Aligned_cols=38  Identities=24%  Similarity=0.381  Sum_probs=35.0

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~-g~~V~l~Er~~~~   78 (455)
                      +.++||+|||||++||++|+.|++. |++|+|||+++.+
T Consensus         5 ~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~   43 (399)
T 1v0j_A            5 TARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHI   43 (399)
T ss_dssp             CCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSS
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            4478999999999999999999999 9999999999765

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.22  E-value=1.9e-06  Score=87.66  Aligned_cols=37  Identities=16%  Similarity=0.170  Sum_probs=33.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+++|||||||+||+.+|..|++.+++|+|||+++.
T Consensus        40 ~~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~   76 (502)
T 4g6h_A           40 SDKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY   76 (502)
T ss_dssp             CSSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE
T ss_pred             CCCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC
Confidence            3467899999999999999999999999999999864

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.21  E-value=1.1e-06  Score=86.50  Aligned_cols=38  Identities=29%  Similarity=0.390  Sum_probs=35.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...+||+|||||++|+++|+.|++.|.+|+|+|+++..
T Consensus        27 ~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~   64 (397)
T 3hdq_A           27 SKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHI   64 (397)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCC
Confidence            45789999999999999999999999999999998765

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.21  E-value=1.4e-05  Score=80.77  Aligned_cols=105  Identities=19%  Similarity=0.357  Sum_probs=77.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.+                   .+                     
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------~~---------------------  222 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA-------------------SM---------------------  222 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS-------------------SS---------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcccc-------------------cc---------------------
Confidence            46899999999999999999999999999999865411                   00                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                     -..+.+.+.+.+++.|+                   +++.+++|++++.
T Consensus       223 -------------------------------~~~~~~~l~~~l~~~gv-------------------~i~~~~~v~~i~~  252 (478)
T 1v59_A          223 -------------------------------DGEVAKATQKFLKKQGL-------------------DFKLSTKVISAKR  252 (478)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHTTC-------------------EEECSEEEEEEEE
T ss_pred             -------------------------------CHHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEEE
Confidence                                           01344556667777786                   9999999999987


Q ss_pred             --cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          203 --TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       203 --~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                        +++.+.+.+....+|+  ..++.+|.||.|.|.....
T Consensus       253 ~~~~~~~~v~~~~~~~g~--~~~~~~D~vv~a~G~~p~~  289 (478)
T 1v59_A          253 NDDKNVVEIVVEDTKTNK--QENLEAEVLLVAVGRRPYI  289 (478)
T ss_dssp             ETTTTEEEEEEEETTTTE--EEEEEESEEEECSCEEECC
T ss_pred             ecCCCeEEEEEEEcCCCC--ceEEECCEEEECCCCCcCC
Confidence              4555555554211222  2378999999999976544

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.19  E-value=1.1e-06  Score=90.05  Aligned_cols=40  Identities=35%  Similarity=0.476  Sum_probs=36.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFST   80 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g-~~V~l~Er~~~~~~   80 (455)
                      +.++||+|||||++||++|+.|+++| ++|+|||+++.+..
T Consensus         6 ~~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGG   46 (516)
T 1rsg_A            6 PAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGG   46 (516)
T ss_dssp             CEEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBT
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCC
Confidence            45689999999999999999999999 99999999987643

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.19  E-value=1.5e-05  Score=83.02  Aligned_cols=35  Identities=26%  Similarity=0.372  Sum_probs=32.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      ...+||+||||||||+++|..|++.|++|+|||+.
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            35689999999999999999999999999999984

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.18  E-value=1.2e-05  Score=80.82  Aligned_cols=102  Identities=18%  Similarity=0.377  Sum_probs=76.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+                   .+                     
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------~~---------------------  209 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS-------------------GF---------------------  209 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-------------------TS---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc-------------------cc---------------------
Confidence            46899999999999999999999999999998765410                   00                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                     ...+.+.+.+.+++.|+                   +++.+++|++++.
T Consensus       210 -------------------------------~~~~~~~l~~~l~~~gv-------------------~i~~~~~v~~i~~  239 (455)
T 1ebd_A          210 -------------------------------EKQMAAIIKKRLKKKGV-------------------EVVTNALAKGAEE  239 (455)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHTTC-------------------EEEESEEEEEEEE
T ss_pred             -------------------------------CHHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEEE
Confidence                                           01344456666777786                   9999999999987


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      +++.+.+.+.  .+|+  ..++.+|.||.|.|....
T Consensus       240 ~~~~~~v~~~--~~g~--~~~~~~D~vv~a~G~~p~  271 (455)
T 1ebd_A          240 REDGVTVTYE--ANGE--TKTIDADYVLVTVGRRPN  271 (455)
T ss_dssp             ETTEEEEEEE--ETTE--EEEEEESEEEECSCEEES
T ss_pred             eCCeEEEEEE--eCCc--eeEEEcCEEEECcCCCcc
Confidence            7666656554  1222  237899999999997654

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.18  E-value=2.3e-06  Score=87.05  Aligned_cols=38  Identities=16%  Similarity=0.420  Sum_probs=33.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~   78 (455)
                      +.++||+|||||+||+++|..|++.  |.+|+|||+.+..
T Consensus         9 ~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~   48 (493)
T 1m6i_A            9 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   48 (493)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            4568999999999999999999887  8899999998754

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.17  E-value=1.1e-05  Score=80.85  Aligned_cols=99  Identities=17%  Similarity=0.291  Sum_probs=74.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEe
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~  121 (455)
                      ...+|+|||||++|+.+|..|++.|.+|+|+|+.+.+..+               .+                       
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~---------------~~-----------------------  189 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV---------------YL-----------------------  189 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT---------------TC-----------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccc---------------cC-----------------------
Confidence            4578999999999999999999999999999987643110               00                       


Q ss_pred             ecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEee
Q 012845          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (455)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~  201 (455)
                                                      ...+.+.+.+.+++.|+                   +++.+++|++++
T Consensus       190 --------------------------------~~~~~~~l~~~l~~~gv-------------------~i~~~~~v~~i~  218 (447)
T 1nhp_A          190 --------------------------------DKEFTDVLTEEMEANNI-------------------TIATGETVERYE  218 (447)
T ss_dssp             --------------------------------CHHHHHHHHHHHHTTTE-------------------EEEESCCEEEEE
T ss_pred             --------------------------------CHHHHHHHHHHHHhCCC-------------------EEEcCCEEEEEE
Confidence                                            02345567777788886                   999999999998


Q ss_pred             ecCCce-EEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          202 ATDQCI-NVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       202 ~~~~~~-~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      .+ +.+ .+.+    ++.    ++.+|.||.|.|....
T Consensus       219 ~~-~~v~~v~~----~~~----~i~~d~vi~a~G~~p~  247 (447)
T 1nhp_A          219 GD-GRVQKVVT----DKN----AYDADLVVVAVGVRPN  247 (447)
T ss_dssp             CS-SBCCEEEE----SSC----EEECSEEEECSCEEES
T ss_pred             cc-CcEEEEEE----CCC----EEECCEEEECcCCCCC
Confidence            65 333 2332    343    7899999999997654

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.17  E-value=1.9e-06  Score=85.66  Aligned_cols=38  Identities=29%  Similarity=0.559  Sum_probs=35.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFS   79 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g-~~V~l~Er~~~~~   79 (455)
                      +++||+|||||++||++|+.|+++| ++|+|||+++.+.
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~G   43 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVG   43 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCC
Confidence            5689999999999999999999999 8999999988764

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.14  E-value=9.3e-06  Score=89.11  Aligned_cols=37  Identities=30%  Similarity=0.499  Sum_probs=34.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      .++||+||||||||+++|+.|++.|++|+|||+.+.+
T Consensus       127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~  163 (965)
T 2gag_A          127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEA  163 (965)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            4689999999999999999999999999999998654

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.13  E-value=2e-06  Score=83.86  Aligned_cols=38  Identities=42%  Similarity=0.570  Sum_probs=34.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC-CCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN-KAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~-~~~   78 (455)
                      ...+||+|||||++||++|+.|+++|++|+|||++ +.+
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~v   80 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRV   80 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCC
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEecccccc
Confidence            45689999999999999999999999999999998 554

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.13  E-value=2.2e-06  Score=87.05  Aligned_cols=40  Identities=33%  Similarity=0.508  Sum_probs=36.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST   80 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~   80 (455)
                      ++++||+|||||++||++|+.|+++|++|+|||+.+.+..
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG   48 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGG   48 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence            4568999999999999999999999999999999987643

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.10  E-value=1.5e-05  Score=80.68  Aligned_cols=100  Identities=21%  Similarity=0.284  Sum_probs=77.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+.+.+                   .+                     
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~-------------------~~---------------------  224 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ-------------------GA---------------------  224 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST-------------------TS---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc-------------------cc---------------------
Confidence            46899999999999999999999999999998765310                   00                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                     -..+.+.+.+.+++.|+                   +++.+++|++++.
T Consensus       225 -------------------------------~~~~~~~l~~~l~~~gV-------------------~i~~~~~v~~i~~  254 (482)
T 1ojt_A          225 -------------------------------DRDLVKVWQKQNEYRFD-------------------NIMVNTKTVAVEP  254 (482)
T ss_dssp             -------------------------------CHHHHHHHHHHHGGGEE-------------------EEECSCEEEEEEE
T ss_pred             -------------------------------CHHHHHHHHHHHHhcCC-------------------EEEECCEEEEEEE
Confidence                                           01334456667777786                   9999999999987


Q ss_pred             cCCceEEEEEeccC----CcceeEEEEeCEEEeecCCCchh
Q 012845          203 TDQCINVIASFLKE----GKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       203 ~~~~~~v~~~~~~~----g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      +++.+.+++.   +    |+    ++.+|.||.|.|.....
T Consensus       255 ~~~~~~v~~~---~~~~~g~----~~~~D~vv~a~G~~p~~  288 (482)
T 1ojt_A          255 KEDGVYVTFE---GANAPKE----PQRYDAVLVAAGRAPNG  288 (482)
T ss_dssp             ETTEEEEEEE---SSSCCSS----CEEESCEEECCCEEECG
T ss_pred             cCCeEEEEEe---ccCCCce----EEEcCEEEECcCCCcCC
Confidence            7666666665   4    43    57899999999976543

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.09  E-value=1.4e-05  Score=80.49  Aligned_cols=101  Identities=19%  Similarity=0.246  Sum_probs=75.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||.+|+-+|..|++.|.+|+|+|+.+.+..                   .+.                    
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~-------------------~~~--------------------  206 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLF-------------------QFD--------------------  206 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-------------------TSC--------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcccc-------------------ccC--------------------
Confidence            45899999999999999999999999999998764310                   000                    


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                      ..+.+.+.+.+++.|+                   +++.+++|++++.
T Consensus       207 --------------------------------~~~~~~l~~~l~~~gv-------------------~i~~~~~v~~i~~  235 (463)
T 2r9z_A          207 --------------------------------PLLSATLAENMHAQGI-------------------ETHLEFAVAALER  235 (463)
T ss_dssp             --------------------------------HHHHHHHHHHHHHTTC-------------------EEESSCCEEEEEE
T ss_pred             --------------------------------HHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEEE
Confidence                                            1223345666677776                   9999999999987


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      +++++.+.+.   +|+.   ++.+|.||.|.|.....
T Consensus       236 ~~~~~~v~~~---~G~~---~i~~D~vv~a~G~~p~~  266 (463)
T 2r9z_A          236 DAQGTTLVAQ---DGTR---LEGFDSVIWAVGRAPNT  266 (463)
T ss_dssp             ETTEEEEEET---TCCE---EEEESEEEECSCEEESC
T ss_pred             eCCeEEEEEe---CCcE---EEEcCEEEECCCCCcCC
Confidence            6666666654   5531   57999999999976543

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.08  E-value=2.5e-05  Score=77.46  Aligned_cols=107  Identities=18%  Similarity=0.262  Sum_probs=80.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||+|..|+-+|..|++.|.+|+++|+.+.+....                                        
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~----------------------------------------  191 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARV----------------------------------------  191 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhh----------------------------------------
Confidence            4679999999999999999999999999999876541000                                        


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                    ....+.+.+.+.+++.|+                   +++.+++|++++.
T Consensus       192 ------------------------------~~~~~~~~l~~~l~~~GV-------------------~i~~~~~v~~i~~  222 (415)
T 3lxd_A          192 ------------------------------AGEALSEFYQAEHRAHGV-------------------DLRTGAAMDCIEG  222 (415)
T ss_dssp             ------------------------------SCHHHHHHHHHHHHHTTC-------------------EEEETCCEEEEEE
T ss_pred             ------------------------------cCHHHHHHHHHHHHhCCC-------------------EEEECCEEEEEEe
Confidence                                          012455556777778887                   9999999999988


Q ss_pred             cCCce-EEEEEeccCCcceeEEEEeCEEEeecCCCch--hhhhcCC
Q 012845          203 TDQCI-NVIASFLKEGKCTERNIQCNILIGTDGAGST--VRKLVGI  245 (455)
Q Consensus       203 ~~~~~-~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~--vr~~l~~  245 (455)
                      +++.+ .+.+.   +|+    ++.+|.||.|.|....  +.+..+.
T Consensus       223 ~~~~v~~v~l~---dG~----~i~aD~Vv~a~G~~p~~~l~~~~gl  261 (415)
T 3lxd_A          223 DGTKVTGVRMQ---DGS----VIPADIVIVGIGIVPCVGALISAGA  261 (415)
T ss_dssp             SSSBEEEEEES---SSC----EEECSEEEECSCCEESCHHHHHTTC
T ss_pred             cCCcEEEEEeC---CCC----EEEcCEEEECCCCccChHHHHhCCC
Confidence            76655 35555   665    7899999999997654  3344443

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.07  E-value=3e-05  Score=77.95  Aligned_cols=138  Identities=11%  Similarity=0.126  Sum_probs=81.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCCCCcc----cccChhHHHHHHhhh-chHHHHHhcCCCcccc
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTHPQA----HFINNRYALVFRKLD-GLAEEIERSQPPVDLW  115 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~~~~~~~----~~l~~~~~~~l~~~~-gl~~~l~~~~~~~~~~  115 (455)
                      ..+|+|||||.+|+-+|..|++.  |.+|++++|.+...+....    ....+...+.+..++ .....+......    
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~----  302 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHN----  302 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGG----
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhc----
Confidence            56899999999999999999999  8999999998765332211    122233333333331 111111110000    


Q ss_pred             cceEEeecCCCCccccccCCCccccccccCCccccccch---hhHHHHHHH-HHHh-cccccccCCCcccccccccccce
Q 012845          116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQ---YKLNKLLLK-QLEK-LNFKICTSEGTEGLHNHLLQGRE  190 (455)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r---~~l~~~L~~-~~~~-~g~~~~~~~~~~~~~~~~~~~~~  190 (455)
                                                     .....++-   ..+.+.+.+ .+.. .|                   ++
T Consensus       303 -------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------------------v~  332 (463)
T 3s5w_A          303 -------------------------------TNYSVVDTDLIERIYGVFYRQKVSGIPR-------------------HA  332 (463)
T ss_dssp             -------------------------------GTSSCBCHHHHHHHHHHHHHHHHHCCCC-------------------SE
T ss_pred             -------------------------------cCCCcCCHHHHHHHHHHHHHHHhcCCCC-------------------eE
Confidence                                           00000111   122222222 2222 34                   49


Q ss_pred             EEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCC
Q 012845          191 ILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAG  236 (455)
Q Consensus       191 i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~  236 (455)
                      ++.+++|++++.+++.+.+++....+|+  ..++.+|+||.|+|..
T Consensus       333 i~~~~~v~~v~~~~~~~~v~~~~~~~g~--~~~~~~D~Vv~AtG~~  376 (463)
T 3s5w_A          333 FRCMTTVERATATAQGIELALRDAGSGE--LSVETYDAVILATGYE  376 (463)
T ss_dssp             EETTEEEEEEEEETTEEEEEEEETTTCC--EEEEEESEEEECCCEE
T ss_pred             EEeCCEEEEEEecCCEEEEEEEEcCCCC--eEEEECCEEEEeeCCC
Confidence            9999999999988888878776443443  3468999999999964

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.07  E-value=4.1e-05  Score=77.22  Aligned_cols=103  Identities=18%  Similarity=0.357  Sum_probs=76.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+.+.+                   .+                     
T Consensus       174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------~~---------------------  213 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAP-------------------TL---------------------  213 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-------------------TS---------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccc-------------------cC---------------------
Confidence            46899999999999999999999999999998865310                   00                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHH-HhcccccccCCCcccccccccccceEEeccEEEEee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQL-EKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~  201 (455)
                                                     ...+.+.+.+.+ ++.|+                   +++.+++|++++
T Consensus       214 -------------------------------d~~~~~~l~~~l~~~~gv-------------------~i~~~~~v~~i~  243 (468)
T 2qae_A          214 -------------------------------DEDVTNALVGALAKNEKM-------------------KFMTSTKVVGGT  243 (468)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHHTCC-------------------EEECSCEEEEEE
T ss_pred             -------------------------------CHHHHHHHHHHHhhcCCc-------------------EEEeCCEEEEEE
Confidence                                           013445566667 77786                   999999999998


Q ss_pred             ecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       202 ~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      .+++.+.+.+.. .+|+  ..++.+|.||.|.|..+.
T Consensus       244 ~~~~~~~v~~~~-~~g~--~~~i~~D~vv~a~G~~p~  277 (468)
T 2qae_A          244 NNGDSVSLEVEG-KNGK--RETVTCEALLVSVGRRPF  277 (468)
T ss_dssp             ECSSSEEEEEEC-C-----EEEEEESEEEECSCEEEC
T ss_pred             EcCCeEEEEEEc-CCCc--eEEEECCEEEECCCcccC
Confidence            876666665541 1231  237899999999997664

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.06  E-value=1.7e-05  Score=78.66  Aligned_cols=108  Identities=25%  Similarity=0.399  Sum_probs=80.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||..|+-+|..|++.|.+|+++|+.+.+.         ++      .+                        
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l---------~~------~~------------------------  183 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELL---------VR------VL------------------------  183 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS---------HH------HH------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccc---------hh------hc------------------------
Confidence            4689999999999999999999999999999876541         00      00                        


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                     -..+.+.+.+.+++.|+                   +++.+++|++++.
T Consensus       184 -------------------------------~~~~~~~l~~~l~~~GV-------------------~i~~~~~v~~i~~  213 (410)
T 3ef6_A          184 -------------------------------GRRIGAWLRGLLTELGV-------------------QVELGTGVVGFSG  213 (410)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHHTC-------------------EEECSCCEEEEEC
T ss_pred             -------------------------------CHHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEec
Confidence                                           01344556667777786                   9999999999987


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch--hhhhcCCC
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST--VRKLVGID  246 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~--vr~~l~~~  246 (455)
                      ++....+.+.   +|+    ++.+|+||.|.|....  +.+.+|..
T Consensus       214 ~~~~~~v~~~---dg~----~i~aD~Vv~a~G~~p~~~l~~~~gl~  252 (410)
T 3ef6_A          214 EGQLEQVMAS---DGR----SFVADSALICVGAEPADQLARQAGLA  252 (410)
T ss_dssp             SSSCCEEEET---TSC----EEECSEEEECSCEEECCHHHHHTTCC
T ss_pred             cCcEEEEEEC---CCC----EEEcCEEEEeeCCeecHHHHHhCCCc
Confidence            6544456665   665    7899999999997654  34445543

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.05  E-value=4.4e-05  Score=77.09  Aligned_cols=105  Identities=20%  Similarity=0.358  Sum_probs=76.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.++                  .+                     
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~~---------------------  218 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGV------------------GI---------------------  218 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCS------------------SC---------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCc------------------cc---------------------
Confidence            468999999999999999999999999999988654210                  00                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                     ...+.+.+.+.+++.|+                   +++.+++|++++.
T Consensus       219 -------------------------------~~~~~~~l~~~l~~~Gv-------------------~i~~~~~v~~i~~  248 (474)
T 1zmd_A          219 -------------------------------DMEISKNFQRILQKQGF-------------------KFKLNTKVTGATK  248 (474)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHTTC-------------------EEECSEEEEEEEE
T ss_pred             -------------------------------CHHHHHHHHHHHHHCCC-------------------EEEeCceEEEEEE
Confidence                                           01344456677777786                   9999999999987


Q ss_pred             cCCc-eEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          203 TDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       203 ~~~~-~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      ++++ +.+.+.....++  ..++.+|.||.|.|....
T Consensus       249 ~~~~~~~v~~~~~~~~~--~~~i~~D~vv~a~G~~p~  283 (474)
T 1zmd_A          249 KSDGKIDVSIEAASGGK--AEVITCDVLLVCIGRRPF  283 (474)
T ss_dssp             CTTSCEEEEEEETTSCC--CEEEEESEEEECSCEEEC
T ss_pred             cCCceEEEEEEecCCCC--ceEEEcCEEEECcCCCcC
Confidence            7665 656543111122  237899999999997654

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.05  E-value=2.3e-05  Score=79.36  Aligned_cols=101  Identities=18%  Similarity=0.222  Sum_probs=75.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+.+.+                   .+                     
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------~~---------------------  224 (479)
T 2hqm_A          185 PKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLR-------------------KF---------------------  224 (479)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCT-------------------TS---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcccc-------------------cc---------------------
Confidence            46899999999999999999999999999998765310                   00                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                     -..+.+.+.+.+++.|+                   +++.+++|++++.
T Consensus       225 -------------------------------d~~~~~~l~~~l~~~Gv-------------------~i~~~~~v~~i~~  254 (479)
T 2hqm_A          225 -------------------------------DECIQNTITDHYVKEGI-------------------NVHKLSKIVKVEK  254 (479)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHHTC-------------------EEECSCCEEEEEE
T ss_pred             -------------------------------CHHHHHHHHHHHHhCCe-------------------EEEeCCEEEEEEE
Confidence                                           01233445666677786                   9999999999987


Q ss_pred             cCCc--eEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          203 TDQC--INVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       203 ~~~~--~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      ++++  +.+.+.   +|+   .++.+|.||.|.|.....
T Consensus       255 ~~~~~~~~v~~~---~G~---~~i~~D~vv~a~G~~p~~  287 (479)
T 2hqm_A          255 NVETDKLKIHMN---DSK---SIDDVDELIWTIGRKSHL  287 (479)
T ss_dssp             CC-CCCEEEEET---TSC---EEEEESEEEECSCEEECC
T ss_pred             cCCCcEEEEEEC---CCc---EEEEcCEEEECCCCCCcc
Confidence            6544  456554   552   278999999999976543

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.05  E-value=2.8e-05  Score=76.85  Aligned_cols=108  Identities=16%  Similarity=0.327  Sum_probs=80.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++|+.+.+....                                        
T Consensus       142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~----------------------------------------  181 (404)
T 3fg2_P          142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARV----------------------------------------  181 (404)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhc----------------------------------------
Confidence            4679999999999999999999999999999876431000                                        


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                    .-..+.+.+.+.+++.|+                   +++.+++|++++.
T Consensus       182 ------------------------------~~~~~~~~l~~~l~~~GV-------------------~i~~~~~v~~i~~  212 (404)
T 3fg2_P          182 ------------------------------VTPEISSYFHDRHSGAGI-------------------RMHYGVRATEIAA  212 (404)
T ss_dssp             ------------------------------SCHHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEE
T ss_pred             ------------------------------cCHHHHHHHHHHHHhCCc-------------------EEEECCEEEEEEe
Confidence                                          012455566777778887                   9999999999987


Q ss_pred             cCCceE-EEEEeccCCcceeEEEEeCEEEeecCCCch--hhhhcCCC
Q 012845          203 TDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGST--VRKLVGID  246 (455)
Q Consensus       203 ~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~--vr~~l~~~  246 (455)
                      +++.+. |.+.   +|+    ++.+|.||.|.|....  +.+..|..
T Consensus       213 ~~~~v~~V~~~---dG~----~i~aD~Vv~a~G~~p~~~l~~~~gl~  252 (404)
T 3fg2_P          213 EGDRVTGVVLS---DGN----TLPCDLVVVGVGVIPNVEIAAAAGLP  252 (404)
T ss_dssp             ETTEEEEEEET---TSC----EEECSEEEECCCEEECCHHHHHTTCC
T ss_pred             cCCcEEEEEeC---CCC----EEEcCEEEECcCCccCHHHHHhCCCC
Confidence            766543 5554   665    7899999999997543  44445543

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.05  E-value=4.4e-05  Score=77.13  Aligned_cols=103  Identities=23%  Similarity=0.336  Sum_probs=79.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEe
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~  121 (455)
                      ...+|+|||||+.|+-+|..|++.|.+|+++++.+.+.+                   .+                    
T Consensus       179 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------~~--------------------  219 (476)
T 3lad_A          179 VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP-------------------AV--------------------  219 (476)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-------------------TS--------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc-------------------cc--------------------
Confidence            346899999999999999999999999999998764310                   00                    


Q ss_pred             ecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEee
Q 012845          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (455)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~  201 (455)
                                                      -..+.+.+.+.+++.|+                   +++.+++|++++
T Consensus       220 --------------------------------~~~~~~~l~~~l~~~Gv-------------------~v~~~~~v~~i~  248 (476)
T 3lad_A          220 --------------------------------DEQVAKEAQKILTKQGL-------------------KILLGARVTGTE  248 (476)
T ss_dssp             --------------------------------CHHHHHHHHHHHHHTTE-------------------EEEETCEEEEEE
T ss_pred             --------------------------------CHHHHHHHHHHHHhCCC-------------------EEEECCEEEEEE
Confidence                                            01344556667777786                   999999999999


Q ss_pred             ecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       202 ~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      .+++.+.+.+.   ++.+ ...+.+|.||.|.|....
T Consensus       249 ~~~~~~~v~~~---~~~g-~~~~~~D~vi~a~G~~p~  281 (476)
T 3lad_A          249 VKNKQVTVKFV---DAEG-EKSQAFDKLIVAVGRRPV  281 (476)
T ss_dssp             ECSSCEEEEEE---SSSE-EEEEEESEEEECSCEEEC
T ss_pred             EcCCEEEEEEE---eCCC-cEEEECCEEEEeeCCccc
Confidence            88777777776   5433 347899999999997543

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.05  E-value=2.7e-05  Score=77.62  Aligned_cols=108  Identities=13%  Similarity=0.269  Sum_probs=78.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...                   .                     
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~-------------------~---------------------  188 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLER-------------------V---------------------  188 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT-------------------T---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc-------------------h---------------------
Confidence            468999999999999999999999999999987543100                   0                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                   + -..+.+.+.+.+++.|+                   +++.+++|++++.
T Consensus       189 -----------------------------~-~~~~~~~l~~~l~~~GV-------------------~i~~~~~v~~i~~  219 (431)
T 1q1r_A          189 -----------------------------T-APPVSAFYEHLHREAGV-------------------DIRTGTQVCGFEM  219 (431)
T ss_dssp             -----------------------------S-CHHHHHHHHHHHHHHTC-------------------EEECSCCEEEEEE
T ss_pred             -----------------------------h-hHHHHHHHHHHHHhCCe-------------------EEEeCCEEEEEEe
Confidence                                         0 01344456667777786                   9999999999986


Q ss_pred             --cCCce-EEEEEeccCCcceeEEEEeCEEEeecCCCc--hhhhhcCCC
Q 012845          203 --TDQCI-NVIASFLKEGKCTERNIQCNILIGTDGAGS--TVRKLVGID  246 (455)
Q Consensus       203 --~~~~~-~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S--~vr~~l~~~  246 (455)
                        +++.+ .+.+.   +|+    ++.+|.||.|.|...  .+-+.++..
T Consensus       220 ~~~~~~v~~v~~~---~G~----~i~~D~Vv~a~G~~p~~~l~~~~gl~  261 (431)
T 1q1r_A          220 STDQQKVTAVLCE---DGT----RLPADLVIAGIGLIPNCELASAAGLQ  261 (431)
T ss_dssp             CTTTCCEEEEEET---TSC----EEECSEEEECCCEEECCHHHHHTTCC
T ss_pred             ccCCCcEEEEEeC---CCC----EEEcCEEEECCCCCcCcchhhccCCC
Confidence              44444 35554   564    789999999999654  344445543

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.04  E-value=2.5e-05  Score=78.77  Aligned_cols=104  Identities=16%  Similarity=0.335  Sum_probs=77.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.+                   .+                     
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-------------------~~---------------------  216 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP-------------------TM---------------------  216 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST-------------------TS---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc-------------------cc---------------------
Confidence            46899999999999999999999999999998865310                   00                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                     ...+.+.+.+.+++.|+                   +++.+++|++++.
T Consensus       217 -------------------------------~~~~~~~l~~~l~~~gv-------------------~i~~~~~v~~i~~  246 (470)
T 1dxl_A          217 -------------------------------DAEIRKQFQRSLEKQGM-------------------KFKLKTKVVGVDT  246 (470)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHSSC-------------------CEECSEEEEEEEC
T ss_pred             -------------------------------cHHHHHHHHHHHHHcCC-------------------EEEeCCEEEEEEE
Confidence                                           01344456667777786                   9999999999987


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      +++.+.+.+....+|+  ..++.+|.||.|.|....
T Consensus       247 ~~~~~~v~~~~~~~g~--~~~~~~D~vv~a~G~~p~  280 (470)
T 1dxl_A          247 SGDGVKLTVEPSAGGE--QTIIEADVVLVSAGRTPF  280 (470)
T ss_dssp             SSSSEEEEEEESSSCC--CEEEEESEEECCCCEEEC
T ss_pred             cCCeEEEEEEecCCCc--ceEEECCEEEECCCCCcC
Confidence            6666666654211232  237899999999997654

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.04  E-value=4.7e-05  Score=77.25  Aligned_cols=103  Identities=17%  Similarity=0.277  Sum_probs=75.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEe
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~  121 (455)
                      ...+|+|||||..|+-+|..|++.|.+|+|+|+.+.+..                   .+                    
T Consensus       173 ~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------~~--------------------  213 (492)
T 3ic9_A          173 LPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVAN-------------------LQ--------------------  213 (492)
T ss_dssp             CCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTT-------------------CC--------------------
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc-------------------cC--------------------
Confidence            356899999999999999999999999999998865410                   00                    


Q ss_pred             ecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEee
Q 012845          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (455)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~  201 (455)
                                                      -..+.+.+.+.+++. +                   +++.+++|++++
T Consensus       214 --------------------------------d~~~~~~l~~~l~~~-V-------------------~i~~~~~v~~i~  241 (492)
T 3ic9_A          214 --------------------------------DEEMKRYAEKTFNEE-F-------------------YFDAKARVISTI  241 (492)
T ss_dssp             --------------------------------CHHHHHHHHHHHHTT-S-------------------EEETTCEEEEEE
T ss_pred             --------------------------------CHHHHHHHHHHHhhC-c-------------------EEEECCEEEEEE
Confidence                                            012334445555554 5                   899999999999


Q ss_pred             ecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       202 ~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      .+++.+.+.+.. .+|  ...++.+|.||.|.|....
T Consensus       242 ~~~~~v~v~~~~-~~G--~~~~i~~D~Vi~a~G~~p~  275 (492)
T 3ic9_A          242 EKEDAVEVIYFD-KSG--QKTTESFQYVLAATGRKAN  275 (492)
T ss_dssp             ECSSSEEEEEEC-TTC--CEEEEEESEEEECSCCEES
T ss_pred             EcCCEEEEEEEe-CCC--ceEEEECCEEEEeeCCccC
Confidence            877777766641 123  2247899999999997543

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.04  E-value=3.9e-05  Score=77.89  Aligned_cols=105  Identities=20%  Similarity=0.363  Sum_probs=79.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEe
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~  121 (455)
                      ...+|+|||||..|+-+|..|++.|.+|+|+|+.+....                   .+                    
T Consensus       197 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------~~--------------------  237 (491)
T 3urh_A          197 VPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILG-------------------GM--------------------  237 (491)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSS-------------------SS--------------------
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccc-------------------cC--------------------
Confidence            346899999999999999999999999999998764310                   00                    


Q ss_pred             ecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEee
Q 012845          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (455)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~  201 (455)
                                                      -..+.+.+.+.+++.|+                   +++.+++|++++
T Consensus       238 --------------------------------d~~~~~~l~~~l~~~gV-------------------~v~~~~~v~~i~  266 (491)
T 3urh_A          238 --------------------------------DGEVAKQLQRMLTKQGI-------------------DFKLGAKVTGAV  266 (491)
T ss_dssp             --------------------------------CHHHHHHHHHHHHHTTC-------------------EEECSEEEEEEE
T ss_pred             --------------------------------CHHHHHHHHHHHHhCCC-------------------EEEECCeEEEEE
Confidence                                            01344456666777776                   999999999999


Q ss_pred             ecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       202 ~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      .+++.+.+.+...++|.  ..++.+|.||.|.|....
T Consensus       267 ~~~~~~~v~~~~~~~g~--~~~i~~D~Vi~a~G~~p~  301 (491)
T 3urh_A          267 KSGDGAKVTFEPVKGGE--ATTLDAEVVLIATGRKPS  301 (491)
T ss_dssp             EETTEEEEEEEETTSCC--CEEEEESEEEECCCCEEC
T ss_pred             EeCCEEEEEEEecCCCc--eEEEEcCEEEEeeCCccC
Confidence            88877777766222232  247899999999997644

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.03  E-value=3.2e-05  Score=78.72  Aligned_cols=100  Identities=17%  Similarity=0.278  Sum_probs=75.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-+                   .+                     
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------~~---------------------  215 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR-------------------KF---------------------  215 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT-------------------TS---------------------
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCc-------------------cc---------------------
Confidence            46899999999999999999999999999998765310                   00                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                     -..+.+.+.+.+++.|+                   +++.+++|++++.
T Consensus       216 -------------------------------d~~~~~~l~~~l~~~gv-------------------~i~~~~~v~~i~~  245 (500)
T 1onf_A          216 -------------------------------DESVINVLENDMKKNNI-------------------NIVTFADVVEIKK  245 (500)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEE
T ss_pred             -------------------------------chhhHHHHHHHHHhCCC-------------------EEEECCEEEEEEE
Confidence                                           01333446667777786                   9999999999987


Q ss_pred             cCCc-eEEEEEeccCCcceeEE-EEeCEEEeecCCCchh
Q 012845          203 TDQC-INVIASFLKEGKCTERN-IQCNILIGTDGAGSTV  239 (455)
Q Consensus       203 ~~~~-~~v~~~~~~~g~~~~~~-~~~d~vV~AdG~~S~v  239 (455)
                      ++++ +.+.+.   +|+    + +.+|.||.|.|.....
T Consensus       246 ~~~~~~~v~~~---~g~----~~~~~D~vi~a~G~~p~~  277 (500)
T 1onf_A          246 VSDKNLSIHLS---DGR----IYEHFDHVIYCVGRSPDT  277 (500)
T ss_dssp             SSTTCEEEEET---TSC----EEEEESEEEECCCBCCTT
T ss_pred             cCCceEEEEEC---CCc----EEEECCEEEECCCCCcCC
Confidence            6543 556554   664    4 8999999999976644

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.02  E-value=5.8e-06  Score=82.61  Aligned_cols=39  Identities=21%  Similarity=0.384  Sum_probs=35.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      +.++||+|||||++|+++|..|++.|++|+|+|+++.+.
T Consensus         4 ~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~g   42 (433)
T 1d5t_A            4 DEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYG   42 (433)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCcc
Confidence            457899999999999999999999999999999997664

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.01  E-value=3.6e-05  Score=77.68  Aligned_cols=108  Identities=20%  Similarity=0.417  Sum_probs=82.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEe
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~-g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~  121 (455)
                      ..+|+|||||.+|+-+|..|++. |.+|+++|+.+...+.                   .                    
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~-------------------~--------------------  199 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPG-------------------F--------------------  199 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTT-------------------T--------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCccccc-------------------c--------------------
Confidence            46899999999999999999999 9999999987543100                   0                    


Q ss_pred             ecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEee
Q 012845          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (455)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~  201 (455)
                                                    + -..+.+.|.+.+++.|+                   +++.+++|++++
T Consensus       200 ------------------------------~-~~~~~~~l~~~l~~~GV-------------------~i~~~~~v~~i~  229 (472)
T 3iwa_A          200 ------------------------------T-SKSLSQMLRHDLEKNDV-------------------VVHTGEKVVRLE  229 (472)
T ss_dssp             ------------------------------S-CHHHHHHHHHHHHHTTC-------------------EEECSCCEEEEE
T ss_pred             ------------------------------c-CHHHHHHHHHHHHhcCC-------------------EEEeCCEEEEEE
Confidence                                          0 12455567777778886                   999999999998


Q ss_pred             ecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch--hhhhcCCC
Q 012845          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST--VRKLVGID  246 (455)
Q Consensus       202 ~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~--vr~~l~~~  246 (455)
                      .+++.+.+.+.   +|+    ++.+|.||.|.|....  +.+.+|..
T Consensus       230 ~~~~~v~v~~~---~g~----~i~aD~Vv~a~G~~p~~~l~~~~gl~  269 (472)
T 3iwa_A          230 GENGKVARVIT---DKR----TLDADLVILAAGVSPNTQLARDAGLE  269 (472)
T ss_dssp             ESSSBEEEEEE---SSC----EEECSEEEECSCEEECCHHHHHHTCC
T ss_pred             ccCCeEEEEEe---CCC----EEEcCEEEECCCCCcCHHHHHhCCcc
Confidence            86777777666   665    7899999999998543  44444543

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=98.01  E-value=6.7e-06  Score=84.86  Aligned_cols=37  Identities=19%  Similarity=0.271  Sum_probs=34.0

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKA   77 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g-~~V~l~Er~~~   77 (455)
                      ...||+||||||.||+.+|..|++.| .+|+|||+.+.
T Consensus         4 ~~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            4 GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             TCEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CCcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            35699999999999999999999997 79999999876

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.01  E-value=1.4e-05  Score=78.86  Aligned_cols=34  Identities=24%  Similarity=0.417  Sum_probs=30.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g--~~V~l~Er~~~   77 (455)
                      .+|||||||+||+++|..|++.+  .+|+|||+++.
T Consensus         3 KkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~   38 (401)
T 3vrd_B            3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNET   38 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCC
Confidence            47999999999999999998876  58999998764

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.00  E-value=4.3e-05  Score=77.71  Aligned_cols=101  Identities=16%  Similarity=0.213  Sum_probs=77.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEe
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~  121 (455)
                      ...+|+|||||..|+-+|..|++.|.+|+++|+.+.+.+                   .+                    
T Consensus       181 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------~~--------------------  221 (499)
T 1xdi_A          181 LPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLP-------------------YE--------------------  221 (499)
T ss_dssp             CCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSC-------------------CS--------------------
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc-------------------cc--------------------
Confidence            346899999999999999999999999999998765310                   00                    


Q ss_pred             ecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEee
Q 012845          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (455)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~  201 (455)
                                                      -..+.+.+.+.+++.|+                   +|+.+++|++++
T Consensus       222 --------------------------------d~~~~~~l~~~l~~~GV-------------------~i~~~~~V~~i~  250 (499)
T 1xdi_A          222 --------------------------------DADAALVLEESFAERGV-------------------RLFKNARAASVT  250 (499)
T ss_dssp             --------------------------------SHHHHHHHHHHHHHTTC-------------------EEETTCCEEEEE
T ss_pred             --------------------------------CHHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEE
Confidence                                            01344556667778786                   999999999998


Q ss_pred             ecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       202 ~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      .+++++.+...   +|.    ++.+|.||.|.|.....
T Consensus       251 ~~~~~v~v~~~---~g~----~i~aD~Vv~a~G~~p~~  281 (499)
T 1xdi_A          251 RTGAGVLVTMT---DGR----TVEGSHALMTIGSVPNT  281 (499)
T ss_dssp             ECSSSEEEEET---TSC----EEEESEEEECCCEEECC
T ss_pred             EeCCEEEEEEC---CCc----EEEcCEEEECCCCCcCC
Confidence            87666655543   554    78999999999987643

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.00  E-value=2.6e-05  Score=79.88  Aligned_cols=101  Identities=19%  Similarity=0.150  Sum_probs=78.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      ..+.+++|||||..|+=+|..|++.|.+|+|+++....                    +++.                  
T Consensus       221 ~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L--------------------~~~D------------------  262 (542)
T 4b1b_A          221 KDPGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVL--------------------RGFD------------------  262 (542)
T ss_dssp             SCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSS--------------------TTSC------------------
T ss_pred             cCCceEEEECCCHHHHHHHHHHHhcCCeEEEecccccc--------------------cccc------------------
Confidence            44578999999999999999999999999999874321                    0110                  


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                                                        .++.+.+.+.+++.|+                   .++.+..+..+
T Consensus       263 ----------------------------------~ei~~~l~~~l~~~gi-------------------~~~~~~~v~~~  289 (542)
T 4b1b_A          263 ----------------------------------QQCAVKVKLYMEEQGV-------------------MFKNGILPKKL  289 (542)
T ss_dssp             ----------------------------------HHHHHHHHHHHHHTTC-------------------EEEETCCEEEE
T ss_pred             ----------------------------------hhHHHHHHHHHHhhcc-------------------eeecceEEEEE
Confidence                                              1344556777788886                   99999999999


Q ss_pred             eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      +..++.+.+.+.   ++.    .+.+|.|+.|.|+.-.+
T Consensus       290 ~~~~~~~~v~~~---~~~----~~~~D~vLvAvGR~Pnt  321 (542)
T 4b1b_A          290 TKMDDKILVEFS---DKT----SELYDTVLYAIGRKGDI  321 (542)
T ss_dssp             EEETTEEEEEET---TSC----EEEESEEEECSCEEESC
T ss_pred             EecCCeEEEEEc---CCC----eEEEEEEEEcccccCCc
Confidence            998888777765   554    67899999999975443

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.99  E-value=5.2e-06  Score=84.18  Aligned_cols=38  Identities=34%  Similarity=0.496  Sum_probs=34.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g-~~V~l~Er~~~~   78 (455)
                      ++.+||+|||||++||++|+.|+++| .+|+|||+++.+
T Consensus         7 ~~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~   45 (484)
T 4dsg_A            7 LLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTP   45 (484)
T ss_dssp             CCSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSS
T ss_pred             ccCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence            35689999999999999999999998 799999999765

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.99  E-value=1.8e-05  Score=79.69  Aligned_cols=99  Identities=21%  Similarity=0.324  Sum_probs=72.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+                   .+                     
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------~~---------------------  210 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP-------------------TY---------------------  210 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST-------------------TS---------------------
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccc-------------------cc---------------------
Confidence            46899999999999999999999999999999865310                   00                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                     ...+.+.+.+.+++.|+                   +++.+++|++++.
T Consensus       211 -------------------------------~~~~~~~l~~~l~~~gv-------------------~i~~~~~v~~i~~  240 (458)
T 1lvl_A          211 -------------------------------DSELTAPVAESLKKLGI-------------------ALHLGHSVEGYEN  240 (458)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHHTC-------------------EEETTCEEEEEET
T ss_pred             -------------------------------CHHHHHHHHHHHHHCCC-------------------EEEECCEEEEEEe
Confidence                                           01233445666677786                   9999999999986


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                       ++ +.+.   .++|+  ..++.+|.||.|.|....
T Consensus       241 -~~-v~v~---~~~G~--~~~i~~D~vv~a~G~~p~  269 (458)
T 1lvl_A          241 -GC-LLAN---DGKGG--QLRLEADRVLVAVGRRPR  269 (458)
T ss_dssp             -TE-EEEE---CSSSC--CCEECCSCEEECCCEEEC
T ss_pred             -CC-EEEE---ECCCc--eEEEECCEEEECcCCCcC
Confidence             33 4343   12342  127899999999997654

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.98  E-value=4.7e-06  Score=81.37  Aligned_cols=36  Identities=36%  Similarity=0.442  Sum_probs=33.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      +||+|||||++|+++|+.|++.|.+|+|+|+++.+.
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~G   37 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIG   37 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence            699999999999999999999999999999987653

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.98  E-value=3.9e-05  Score=75.89  Aligned_cols=104  Identities=16%  Similarity=0.303  Sum_probs=76.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+.+..+                  .+                     
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~~---------------------  185 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR------------------AA---------------------  185 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT------------------TS---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc------------------cc---------------------
Confidence            468999999999999999999999999999988643100                  00                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                     -..+.+.+.+.+++.|+                   +++.+++|++++ 
T Consensus       186 -------------------------------~~~~~~~l~~~l~~~GV-------------------~i~~~~~v~~i~-  214 (408)
T 2gqw_A          186 -------------------------------PATLADFVARYHAAQGV-------------------DLRFERSVTGSV-  214 (408)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHTTC-------------------EEEESCCEEEEE-
T ss_pred             -------------------------------CHHHHHHHHHHHHHcCc-------------------EEEeCCEEEEEE-
Confidence                                           01344456667777786                   999999999998 


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch--hhhhcCCC
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST--VRKLVGID  246 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~--vr~~l~~~  246 (455)
                      + +  .+++.   +|+    ++.+|.||.|.|....  +-+..+..
T Consensus       215 ~-~--~v~~~---~g~----~i~~D~vi~a~G~~p~~~l~~~~gl~  250 (408)
T 2gqw_A          215 D-G--VVLLD---DGT----RIAADMVVVGIGVLANDALARAAGLA  250 (408)
T ss_dssp             T-T--EEEET---TSC----EEECSEEEECSCEEECCHHHHHHTCC
T ss_pred             C-C--EEEEC---CCC----EEEcCEEEECcCCCccHHHHHhCCCC
Confidence            3 3  45554   664    7899999999996543  34444543

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.97  E-value=7.3e-05  Score=75.25  Aligned_cols=102  Identities=20%  Similarity=0.353  Sum_probs=76.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+.+.+                   .+                     
T Consensus       171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------~~---------------------  210 (464)
T 2a8x_A          171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALP-------------------NE---------------------  210 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-------------------TS---------------------
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcccc-------------------cc---------------------
Confidence            46899999999999999999999999999998865310                   00                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                     -..+.+.+.+.+++.|+                   +++.+++|++++.
T Consensus       211 -------------------------------~~~~~~~l~~~l~~~gv-------------------~i~~~~~v~~i~~  240 (464)
T 2a8x_A          211 -------------------------------DADVSKEIEKQFKKLGV-------------------TILTATKVESIAD  240 (464)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHHTC-------------------EEECSCEEEEEEE
T ss_pred             -------------------------------CHHHHHHHHHHHHHcCC-------------------EEEeCcEEEEEEE
Confidence                                           01233446666677786                   9999999999987


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      +++.+.+.+.  ++|+  ..++.+|.||.|.|....
T Consensus       241 ~~~~~~v~~~--~~g~--~~~~~~D~vv~a~G~~p~  272 (464)
T 2a8x_A          241 GGSQVTVTVT--KDGV--AQELKAEKVLQAIGFAPN  272 (464)
T ss_dssp             CSSCEEEEEE--SSSC--EEEEEESEEEECSCEEEC
T ss_pred             cCCeEEEEEE--cCCc--eEEEEcCEEEECCCCCcc
Confidence            6666655553  2342  237899999999997653

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.97  E-value=4.7e-06  Score=81.88  Aligned_cols=37  Identities=27%  Similarity=0.460  Sum_probs=34.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      ++||+|||||++|+++|+.|++.|++|+|||+++.+.
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~G   39 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG   39 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcC
Confidence            4799999999999999999999999999999987653

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=97.96  E-value=6.1e-06  Score=82.78  Aligned_cols=40  Identities=33%  Similarity=0.453  Sum_probs=36.6

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      |+..+||+|||+|++|+++|+.|++.|.+|+|+||++...
T Consensus        17 ~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~G   56 (475)
T 3p1w_A           17 QGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYG   56 (475)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCC
Confidence            3567999999999999999999999999999999998664

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.96  E-value=8.2e-05  Score=70.60  Aligned_cols=101  Identities=14%  Similarity=0.199  Sum_probs=73.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||+|++|+-+|..|++.|.+|+++++.+....       .                                  
T Consensus       145 ~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------~----------------------------------  183 (320)
T 1trb_A          145 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA-------E----------------------------------  183 (320)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCC-------C----------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCcccc-------C----------------------------------
Confidence            46899999999999999999999999999998754310       0                                  


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                      ..+.+.+.+.+++.|+                   +++.+++|+++..
T Consensus       184 --------------------------------~~~~~~l~~~l~~~gv-------------------~i~~~~~v~~i~~  212 (320)
T 1trb_A          184 --------------------------------KILIKRLMDKVENGNI-------------------ILHTNRTLEEVTG  212 (320)
T ss_dssp             --------------------------------HHHHHHHHHHHHTSSE-------------------EEECSCEEEEEEE
T ss_pred             --------------------------------HHHHHHHHHhcccCCe-------------------EEEcCceeEEEEc
Confidence                                            1223335556667776                   9999999999987


Q ss_pred             cCCceE-EEEEeccC-CcceeEEEEeCEEEeecCCCc
Q 012845          203 TDQCIN-VIASFLKE-GKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       203 ~~~~~~-v~~~~~~~-g~~~~~~~~~d~vV~AdG~~S  237 (455)
                      +++.+. +.+....+ |+  ..++.+|.||.|.|...
T Consensus       213 ~~~~v~~v~~~~~~~~g~--~~~i~~D~vv~a~G~~p  247 (320)
T 1trb_A          213 DQMGVTGVRLRDTQNSDN--IESLDVAGLFVAIGHSP  247 (320)
T ss_dssp             CSSSEEEEEEECCTTCCC--CEEEECSEEEECSCEEE
T ss_pred             CCCceEEEEEEeccCCCc--eEEEEcCEEEEEeCCCC
Confidence            665543 55551111 32  24789999999999643

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.96  E-value=4.9e-06  Score=83.54  Aligned_cols=35  Identities=20%  Similarity=0.365  Sum_probs=32.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      +.++||+|||||++|+++|+.|++.|++|+|||+.
T Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~   36 (450)
T 1ges_A            2 TKHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK   36 (450)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC
Confidence            35689999999999999999999999999999997

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.95  E-value=9.2e-05  Score=74.81  Aligned_cols=103  Identities=18%  Similarity=0.225  Sum_probs=74.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||..|+-+|..|++.|.+|+|+++.+.+-.                   .+                     
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------~~---------------------  226 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR-------------------SF---------------------  226 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT-------------------TS---------------------
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCcccc-------------------cc---------------------
Confidence            46899999999999999999999999999998764310                   00                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                     -..+.+.+.+.+++.|+                   +++.+++|++++.
T Consensus       227 -------------------------------d~~~~~~~~~~l~~~gv-------------------~i~~~~~v~~i~~  256 (478)
T 3dk9_A          227 -------------------------------DSMISTNCTEELENAGV-------------------EVLKFSQVKEVKK  256 (478)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHTTC-------------------EEETTEEEEEEEE
T ss_pred             -------------------------------CHHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEEE
Confidence                                           01234456666777786                   9999999999987


Q ss_pred             cCCc--eEEEEEeccCCcce--eEEEEeCEEEeecCCCc
Q 012845          203 TDQC--INVIASFLKEGKCT--ERNIQCNILIGTDGAGS  237 (455)
Q Consensus       203 ~~~~--~~v~~~~~~~g~~~--~~~~~~d~vV~AdG~~S  237 (455)
                      .+++  +.+.+.  +.+++.  ..++.+|.||.|.|...
T Consensus       257 ~~~~~~~~v~~~--~~~~g~~~g~~~~~D~vi~a~G~~p  293 (478)
T 3dk9_A          257 TLSGLEVSMVTA--VPGRLPVMTMIPDVDCLLWAIGRVP  293 (478)
T ss_dssp             CSSSEEEEEEEC--CTTSCCEEEEEEEESEEEECSCEEE
T ss_pred             cCCCcEEEEEEc--cCCCCcccceEEEcCEEEEeecccc
Confidence            6665  444443  222121  14789999999999654

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.94  E-value=5.7e-05  Score=75.79  Aligned_cols=100  Identities=17%  Similarity=0.291  Sum_probs=74.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+.+...                  .+                     
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~~---------------------  189 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYK------------------YF---------------------  189 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTT------------------TS---------------------
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhh------------------hh---------------------
Confidence            468999999999999999999999999999987643110                  00                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                     -..+.+.+.+.+++.|+                   +++.+++|++++.
T Consensus       190 -------------------------------~~~~~~~l~~~l~~~Gv-------------------~i~~~~~v~~i~~  219 (452)
T 2cdu_A          190 -------------------------------DKEFTDILAKDYEAHGV-------------------NLVLGSKVAAFEE  219 (452)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHTTC-------------------EEEESSCEEEEEE
T ss_pred             -------------------------------hhhHHHHHHHHHHHCCC-------------------EEEcCCeeEEEEc
Confidence                                           01344556677778886                   9999999999986


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      .++.+.....   +|.    ++.+|.||.|.|....
T Consensus       220 ~~~~v~~v~~---~g~----~i~~D~vv~a~G~~p~  248 (452)
T 2cdu_A          220 VDDEIITKTL---DGK----EIKSDIAILCIGFRPN  248 (452)
T ss_dssp             ETTEEEEEET---TSC----EEEESEEEECCCEEEC
T ss_pred             CCCeEEEEEe---CCC----EEECCEEEECcCCCCC
Confidence            5555432222   443    7899999999997654

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.93  E-value=3.5e-05  Score=78.19  Aligned_cols=100  Identities=15%  Similarity=0.214  Sum_probs=76.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceE
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~---g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~  119 (455)
                      ..+|+|||||..|+-+|..|++.   |.+|+|+|+.+.+-+                   .+                  
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~-------------------~~------------------  229 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR-------------------GF------------------  229 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST-------------------TS------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCccc-------------------cc------------------
Confidence            46899999999999999999999   999999998864310                   00                  


Q ss_pred             EeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEE
Q 012845          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (455)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~  199 (455)
                                                        -..+.+.|.+.+++.|+                   +|+.+++|++
T Consensus       230 ----------------------------------d~~~~~~l~~~l~~~GV-------------------~i~~~~~v~~  256 (490)
T 1fec_A          230 ----------------------------------DSELRKQLTEQLRANGI-------------------NVRTHENPAK  256 (490)
T ss_dssp             ----------------------------------CHHHHHHHHHHHHHTTE-------------------EEEETCCEEE
T ss_pred             ----------------------------------CHHHHHHHHHHHHhCCC-------------------EEEeCCEEEE
Confidence                                              01344556677777786                   9999999999


Q ss_pred             eeecCCc-eEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          200 VSATDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       200 i~~~~~~-~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      ++.++++ +.+.+.   +|+    ++.+|.||.|.|.....
T Consensus       257 i~~~~~~~~~v~~~---~G~----~i~~D~vv~a~G~~p~~  290 (490)
T 1fec_A          257 VTKNADGTRHVVFE---SGA----EADYDVVMLAIGRVPRS  290 (490)
T ss_dssp             EEECTTSCEEEEET---TSC----EEEESEEEECSCEEESC
T ss_pred             EEEcCCCEEEEEEC---CCc----EEEcCEEEEccCCCcCc
Confidence            9876543 556554   664    78999999999976543

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.93  E-value=6.4e-05  Score=75.40  Aligned_cols=98  Identities=22%  Similarity=0.277  Sum_probs=75.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||..|+-+|..|++.|.+|+++|+.+.+..                   ..                     
T Consensus       147 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------~~---------------------  186 (452)
T 3oc4_A          147 SQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLP-------------------KY---------------------  186 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-------------------TT---------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcccc-------------------cc---------------------
Confidence            46899999999999999999999999999998765310                   00                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                   + -..+.+.+.+.+++.|+                   +++.+++|++++.
T Consensus       187 -----------------------------~-d~~~~~~l~~~l~~~GV-------------------~i~~~~~v~~i~~  217 (452)
T 3oc4_A          187 -----------------------------F-DKEMVAEVQKSLEKQAV-------------------IFHFEETVLGIEE  217 (452)
T ss_dssp             -----------------------------C-CHHHHHHHHHHHHTTTE-------------------EEEETCCEEEEEE
T ss_pred             -----------------------------C-CHHHHHHHHHHHHHcCC-------------------EEEeCCEEEEEEc
Confidence                                         0 01345556777777786                   9999999999987


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                      .++.+.+.+.   ++     ++.+|.||.|.|...
T Consensus       218 ~~~~v~v~~~---~g-----~i~aD~Vv~A~G~~p  244 (452)
T 3oc4_A          218 TANGIVLETS---EQ-----EISCDSGIFALNLHP  244 (452)
T ss_dssp             CSSCEEEEES---SC-----EEEESEEEECSCCBC
T ss_pred             cCCeEEEEEC---CC-----EEEeCEEEECcCCCC
Confidence            6666655443   43     679999999999754

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.92  E-value=5.2e-05  Score=77.01  Aligned_cols=100  Identities=20%  Similarity=0.266  Sum_probs=76.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceE
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~---g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~  119 (455)
                      ..+|+|||||..|+-+|..|++.   |.+|+|+|+.+.+-+                   .+                  
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~-------------------~~------------------  233 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILR-------------------GF------------------  233 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCT-------------------TS------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcccc-------------------cc------------------
Confidence            46899999999999999999999   999999998765310                   00                  


Q ss_pred             EeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEE
Q 012845          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (455)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~  199 (455)
                                                        -..+.+.|.+.+++.|+                   +++.+++|++
T Consensus       234 ----------------------------------d~~~~~~l~~~l~~~GV-------------------~i~~~~~v~~  260 (495)
T 2wpf_A          234 ----------------------------------DETIREEVTKQLTANGI-------------------EIMTNENPAK  260 (495)
T ss_dssp             ----------------------------------CHHHHHHHHHHHHHTTC-------------------EEEESCCEEE
T ss_pred             ----------------------------------CHHHHHHHHHHHHhCCC-------------------EEEeCCEEEE
Confidence                                              01234456666777786                   9999999999


Q ss_pred             eeecCCc-eEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          200 VSATDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       200 i~~~~~~-~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      ++.++++ +.+.+.   +|+    ++.+|.||.|.|.....
T Consensus       261 i~~~~~~~~~v~~~---~G~----~i~~D~vv~a~G~~p~~  294 (495)
T 2wpf_A          261 VSLNTDGSKHVTFE---SGK----TLDVDVVMMAIGRIPRT  294 (495)
T ss_dssp             EEECTTSCEEEEET---TSC----EEEESEEEECSCEEECC
T ss_pred             EEEcCCceEEEEEC---CCc----EEEcCEEEECCCCcccc
Confidence            9876543 556554   664    78999999999976543

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.92  E-value=5.9e-05  Score=77.91  Aligned_cols=35  Identities=34%  Similarity=0.488  Sum_probs=32.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      .+|+|||||..|+-+|..|++.|.+|+++|+.+..
T Consensus       152 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  186 (565)
T 3ntd_A          152 EHATVVGGGFIGLEMMESLHHLGIKTTLLELADQV  186 (565)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCcc
Confidence            48999999999999999999999999999987643

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.92  E-value=5.3e-05  Score=76.33  Aligned_cols=98  Identities=17%  Similarity=0.266  Sum_probs=74.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+.+-+      +.                                  
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------~~----------------------------------  215 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR------ED----------------------------------  215 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT------SC----------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC------CC----------------------------------
Confidence            46899999999999999999999999999998764310      00                                  


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                      ..+.+.+.+.+++.|+                   +++.+++|++++.
T Consensus       216 --------------------------------~~~~~~l~~~l~~~Gv-------------------~i~~~~~v~~i~~  244 (467)
T 1zk7_A          216 --------------------------------PAIGEAVTAAFRAEGI-------------------EVLEHTQASQVAH  244 (467)
T ss_dssp             --------------------------------HHHHHHHHHHHHHTTC-------------------EEETTCCEEEEEE
T ss_pred             --------------------------------HHHHHHHHHHHHhCCC-------------------EEEcCCEEEEEEE
Confidence                                            1334456666777786                   9999999999987


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      +++.+.+.+    ++.    ++.+|.||.|.|.....
T Consensus       245 ~~~~~~v~~----~~~----~i~aD~Vv~a~G~~p~~  273 (467)
T 1zk7_A          245 MDGEFVLTT----THG----ELRADKLLVATGRTPNT  273 (467)
T ss_dssp             ETTEEEEEE----TTE----EEEESEEEECSCEEESC
T ss_pred             eCCEEEEEE----CCc----EEEcCEEEECCCCCcCC
Confidence            665544443    232    78999999999987653

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.92  E-value=7.8e-06  Score=82.12  Aligned_cols=37  Identities=27%  Similarity=0.437  Sum_probs=34.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..+||+||||||||+++|+.|++.|++|+|||+.+.+
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~  157 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRM  157 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            4579999999999999999999999999999998754

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.90  E-value=6.9e-06  Score=83.54  Aligned_cols=40  Identities=33%  Similarity=0.410  Sum_probs=35.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST   80 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~   80 (455)
                      ...+||+|||||++||++|+.|++.|++|+|+|+++.+..
T Consensus        31 ~~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg   70 (498)
T 2iid_A           31 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG   70 (498)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCC
Confidence            3467999999999999999999999999999999876643

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.89  E-value=4.3e-05  Score=77.34  Aligned_cols=99  Identities=19%  Similarity=0.388  Sum_probs=73.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEe
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~  121 (455)
                      ...+|+|||||++|+-+|..|++.|.+|+|+|+.+.+..                .+                       
T Consensus       185 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~----------------~~-----------------------  225 (480)
T 3cgb_A          185 KVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT----------------IY-----------------------  225 (480)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTS----------------SS-----------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhh----------------cC-----------------------
Confidence            356899999999999999999999999999998754310                00                       


Q ss_pred             ecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEee
Q 012845          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (455)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~  201 (455)
                                                      -..+.+.+.+.+++.|+                   +++.+++|++++
T Consensus       226 --------------------------------~~~~~~~l~~~l~~~Gv-------------------~i~~~~~v~~i~  254 (480)
T 3cgb_A          226 --------------------------------DGDMAEYIYKEADKHHI-------------------EILTNENVKAFK  254 (480)
T ss_dssp             --------------------------------CHHHHHHHHHHHHHTTC-------------------EEECSCCEEEEE
T ss_pred             --------------------------------CHHHHHHHHHHHHHcCc-------------------EEEcCCEEEEEE
Confidence                                            01344556777778886                   999999999998


Q ss_pred             ecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       202 ~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      .+ +.+.....   ++.    ++.+|.||.|.|....
T Consensus       255 ~~-~~v~~v~~---~~~----~i~~D~vi~a~G~~p~  283 (480)
T 3cgb_A          255 GN-ERVEAVET---DKG----TYKADLVLVSVGVKPN  283 (480)
T ss_dssp             ES-SBEEEEEE---TTE----EEECSEEEECSCEEES
T ss_pred             cC-CcEEEEEE---CCC----EEEcCEEEECcCCCcC
Confidence            65 33322222   332    6899999999997653

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.86  E-value=8.1e-05  Score=75.49  Aligned_cols=99  Identities=17%  Similarity=0.319  Sum_probs=73.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEe
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~  121 (455)
                      ...+|+|||||..|+-+|..|++.|.+|+|+|+.+.+...                  .+                    
T Consensus       193 ~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------~~--------------------  234 (490)
T 2bc0_A          193 DIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAG------------------YY--------------------  234 (490)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT------------------TS--------------------
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhh------------------HH--------------------
Confidence            3468999999999999999999999999999987643110                  00                    


Q ss_pred             ecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEee
Q 012845          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (455)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~  201 (455)
                                                      -..+.+.+.+.+++.|+                   +++.+++|++++
T Consensus       235 --------------------------------~~~~~~~l~~~l~~~GV-------------------~i~~~~~v~~i~  263 (490)
T 2bc0_A          235 --------------------------------DRDLTDLMAKNMEEHGI-------------------QLAFGETVKEVA  263 (490)
T ss_dssp             --------------------------------CHHHHHHHHHHHHTTTC-------------------EEEETCCEEEEE
T ss_pred             --------------------------------HHHHHHHHHHHHHhCCe-------------------EEEeCCEEEEEE
Confidence                                            01344556677778786                   999999999998


Q ss_pred             ecCCceE-EEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          202 ATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       202 ~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      . ++.+. +.+    +|.    ++.+|.||.|.|....
T Consensus       264 ~-~~~v~~v~~----~g~----~i~~D~Vi~a~G~~p~  292 (490)
T 2bc0_A          264 G-NGKVEKIIT----DKN----EYDVDMVILAVGFRPN  292 (490)
T ss_dssp             C-SSSCCEEEE----SSC----EEECSEEEECCCEEEC
T ss_pred             c-CCcEEEEEE----CCc----EEECCEEEECCCCCcC
Confidence            6 33332 332    443    7899999999996543

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.82  E-value=9.9e-05  Score=74.89  Aligned_cols=107  Identities=17%  Similarity=0.291  Sum_probs=77.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHh----CCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccce
Q 012845           43 VVPVLIVGAGPVGLVLSILLTK----LGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKF  118 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~----~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~  118 (455)
                      ..+|+|||||..|+-+|..|++    .|.+|+++++.+.+..+                   +                 
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~-------------------~-----------------  223 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGK-------------------I-----------------  223 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTT-------------------T-----------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccc-------------------c-----------------
Confidence            4689999999999999999987    47899999876432100                   0                 


Q ss_pred             EEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEE
Q 012845          119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV  198 (455)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~  198 (455)
                                                       ++ ..+.+.+.+.+++.|+                   +++.+++|+
T Consensus       224 ---------------------------------l~-~~~~~~~~~~l~~~GV-------------------~v~~~~~V~  250 (493)
T 1m6i_A          224 ---------------------------------LP-EYLSNWTMEKVRREGV-------------------KVMPNAIVQ  250 (493)
T ss_dssp             ---------------------------------SC-HHHHHHHHHHHHTTTC-------------------EEECSCCEE
T ss_pred             ---------------------------------CC-HHHHHHHHHHHHhcCC-------------------EEEeCCEEE
Confidence                                             00 1344456667778786                   999999999


Q ss_pred             EeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch--hhhhcCC
Q 012845          199 SVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST--VRKLVGI  245 (455)
Q Consensus       199 ~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~--vr~~l~~  245 (455)
                      +++.+++.+.+.+.   +|+    ++.+|+||.|.|....  +.+..|.
T Consensus       251 ~i~~~~~~~~v~l~---dG~----~i~aD~Vv~a~G~~pn~~l~~~~gl  292 (493)
T 1m6i_A          251 SVGVSSGKLLIKLK---DGR----KVETDHIVAAVGLEPNVELAKTGGL  292 (493)
T ss_dssp             EEEEETTEEEEEET---TSC----EEEESEEEECCCEEECCTTHHHHTC
T ss_pred             EEEecCCeEEEEEC---CCC----EEECCEEEECCCCCccHHHHHHcCC
Confidence            99876666556655   664    7899999999997643  3444444

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.81  E-value=0.00014  Score=73.46  Aligned_cols=101  Identities=21%  Similarity=0.251  Sum_probs=74.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||..|+-+|..|++.|.+|+|+++....                    +.+                     
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l--------------------~~~---------------------  225 (483)
T 3dgh_A          187 PGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVL--------------------RGF---------------------  225 (483)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSS--------------------TTS---------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC--------------------ccc---------------------
Confidence            457999999999999999999999999999974211                    011                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                     -..+.+.+.+.+++.|+                   +++.+++|++++.
T Consensus       226 -------------------------------d~~~~~~l~~~l~~~Gv-------------------~i~~~~~v~~i~~  255 (483)
T 3dgh_A          226 -------------------------------DQQMAELVAASMEERGI-------------------PFLRKTVPLSVEK  255 (483)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHTTC-------------------CEEETEEEEEEEE
T ss_pred             -------------------------------CHHHHHHHHHHHHhCCC-------------------EEEeCCEEEEEEE
Confidence                                           01344456667777786                   9999999999987


Q ss_pred             cCC-ceEEEEEeccCCc-ceeEEEEeCEEEeecCCCc
Q 012845          203 TDQ-CINVIASFLKEGK-CTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       203 ~~~-~~~v~~~~~~~g~-~~~~~~~~d~vV~AdG~~S  237 (455)
                      .++ .+.+++.   ++. +...++.+|.||.|.|...
T Consensus       256 ~~~~~~~v~~~---~~~~~~~~~~~~D~vi~a~G~~p  289 (483)
T 3dgh_A          256 QDDGKLLVKYK---NVETGEESEDVYDTVLWAIGRKG  289 (483)
T ss_dssp             CTTSCEEEEEE---ETTTCCEEEEEESEEEECSCEEE
T ss_pred             cCCCcEEEEEe---cCCCCceeEEEcCEEEECccccc
Confidence            544 4556665   332 3344789999999999754

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.80  E-value=0.00022  Score=72.18  Aligned_cols=103  Identities=18%  Similarity=0.233  Sum_probs=74.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEe
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~  121 (455)
                      ...+|+|||||..|+-+|..|++.|.+|+|+++....                    +.+.                   
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l--------------------~~~d-------------------  224 (488)
T 3dgz_A          184 SPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPL--------------------RGFD-------------------  224 (488)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSS--------------------TTSC-------------------
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCccc--------------------ccCC-------------------
Confidence            3457999999999999999999999999999975311                    0110                   


Q ss_pred             ecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEee
Q 012845          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (455)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~  201 (455)
                                                       ..+.+.+.+.+++.|+                   +++.++++.++.
T Consensus       225 ---------------------------------~~~~~~l~~~l~~~gv-------------------~~~~~~~v~~i~  252 (488)
T 3dgz_A          225 ---------------------------------QQMSSLVTEHMESHGT-------------------QFLKGCVPSHIK  252 (488)
T ss_dssp             ---------------------------------HHHHHHHHHHHHHTTC-------------------EEEETEEEEEEE
T ss_pred             ---------------------------------HHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEE
Confidence                                             1244456666777786                   999999999998


Q ss_pred             ec-CCceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          202 AT-DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       202 ~~-~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                      .. ++.+.+.+...++|  ...++.+|.||.|.|...
T Consensus       253 ~~~~~~~~v~~~~~~~g--~~~~~~~D~vi~a~G~~p  287 (488)
T 3dgz_A          253 KLPTNQLQVTWEDHASG--KEDTGTFDTVLWAIGRVP  287 (488)
T ss_dssp             ECTTSCEEEEEEETTTT--EEEEEEESEEEECSCEEE
T ss_pred             EcCCCcEEEEEEeCCCC--eeEEEECCEEEEcccCCc
Confidence            74 34455666522223  233578999999999654

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.75  E-value=0.0002  Score=68.36  Aligned_cols=36  Identities=25%  Similarity=0.388  Sum_probs=32.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..+|+|||+|++|+-+|..|++.|.+|+++++.+..
T Consensus       173 ~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~  208 (338)
T 3itj_A          173 NKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHL  208 (338)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcc
Confidence            467999999999999999999999999999987643

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.74  E-value=2.3e-05  Score=79.07  Aligned_cols=38  Identities=29%  Similarity=0.421  Sum_probs=33.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAFS   79 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~~~   79 (455)
                      ..+||+|||||++|+++|+.|++.|+ +|+|||+.+.+.
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~g   41 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIG   41 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSB
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCC
Confidence            46899999999999999999999999 899999987654

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.73  E-value=0.00022  Score=68.12  Aligned_cols=35  Identities=20%  Similarity=0.295  Sum_probs=32.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus       152 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~  186 (335)
T 2zbw_A          152 GKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQ  186 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCc
Confidence            46899999999999999999999999999998754

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.72  E-value=0.00013  Score=71.13  Aligned_cols=35  Identities=26%  Similarity=0.484  Sum_probs=32.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+.+
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  178 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF  178 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCee
Confidence            68999999999999999999999999999988653

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.68  E-value=0.00018  Score=69.63  Aligned_cols=35  Identities=23%  Similarity=0.310  Sum_probs=32.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus       163 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~  197 (360)
T 3ab1_A          163 GKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHE  197 (360)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCC
Confidence            45899999999999999999999999999998764

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.67  E-value=3.2e-05  Score=79.65  Aligned_cols=37  Identities=32%  Similarity=0.473  Sum_probs=34.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..+|++|||+|++|+.+|..|++.|++|+|+|+....
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~~   42 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPS   42 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            5699999999999999999999999999999998754

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.66  E-value=0.00024  Score=71.42  Aligned_cols=98  Identities=19%  Similarity=0.269  Sum_probs=75.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||+.|+-+|..|++.|.+|+++++.+.+..                   .+                     
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~-------------------~~---------------------  209 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILS-------------------RF---------------------  209 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-------------------TS---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc-------------------cc---------------------
Confidence            56899999999999999999999999999998764210                   00                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                     -..+.+.+.+.+++.|+                   +++.+++|++++.
T Consensus       210 -------------------------------~~~~~~~l~~~l~~~Gv-------------------~i~~~~~v~~i~~  239 (463)
T 4dna_A          210 -------------------------------DQDMRRGLHAAMEEKGI-------------------RILCEDIIQSVSA  239 (463)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEE
T ss_pred             -------------------------------CHHHHHHHHHHHHHCCC-------------------EEECCCEEEEEEE
Confidence                                           01345556777788887                   9999999999988


Q ss_pred             cCCc-eEEE-EEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          203 TDQC-INVI-ASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       203 ~~~~-~~v~-~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      ++++ +.+. +.   +|     .+.+|.||.|.|....
T Consensus       240 ~~~~~~~v~~~~---~g-----~i~aD~Vv~a~G~~p~  269 (463)
T 4dna_A          240 DADGRRVATTMK---HG-----EIVADQVMLALGRMPN  269 (463)
T ss_dssp             CTTSCEEEEESS---SC-----EEEESEEEECSCEEES
T ss_pred             cCCCEEEEEEcC---CC-----eEEeCEEEEeeCcccC
Confidence            7555 4454 33   55     2789999999997654

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.65  E-value=3.2e-05  Score=82.42  Aligned_cols=38  Identities=29%  Similarity=0.428  Sum_probs=34.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...+||+||||||||+++|+.|+++|++|+|||+.+..
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~  424 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI  424 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            34689999999999999999999999999999998764

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.64  E-value=3.2e-05  Score=79.11  Aligned_cols=36  Identities=22%  Similarity=0.418  Sum_probs=32.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHh-CCCCEEEEcCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTK-LGIKCSVLEKNKA   77 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~-~g~~V~l~Er~~~   77 (455)
                      ..||+||||||+||+.+|..|++ .|++|+|||+...
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            47999999999999999999998 5899999999865

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.63  E-value=0.00025  Score=73.56  Aligned_cols=97  Identities=16%  Similarity=0.306  Sum_probs=73.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||.+|+-+|..|++.|.+|+++|+.+...+                   .+                     
T Consensus       187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------~~---------------------  226 (588)
T 3ics_A          187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMP-------------------PI---------------------  226 (588)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT-------------------TS---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcccc-------------------cC---------------------
Confidence            46899999999999999999999999999998764311                   00                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                     ...+.+.+.+.+++.|+                   +++.+++|++++.
T Consensus       227 -------------------------------~~~~~~~l~~~l~~~GV-------------------~i~~~~~v~~i~~  256 (588)
T 3ics_A          227 -------------------------------DYEMAAYVHEHMKNHDV-------------------ELVFEDGVDALEE  256 (588)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEG
T ss_pred             -------------------------------CHHHHHHHHHHHHHcCC-------------------EEEECCeEEEEec
Confidence                                           01334456666777786                   9999999999987


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      +++.  +.+.   +|+    ++.+|.||.|.|....
T Consensus       257 ~~~~--v~~~---~g~----~i~~D~Vi~a~G~~p~  283 (588)
T 3ics_A          257 NGAV--VRLK---SGS----VIQTDMLILAIGVQPE  283 (588)
T ss_dssp             GGTE--EEET---TSC----EEECSEEEECSCEEEC
T ss_pred             CCCE--EEEC---CCC----EEEcCEEEEccCCCCC
Confidence            6553  4444   664    7899999999997543

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.62  E-value=2.4e-05  Score=78.55  Aligned_cols=37  Identities=24%  Similarity=0.286  Sum_probs=33.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHh-C------CCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTK-L------GIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~-~------g~~V~l~Er~~~~   78 (455)
                      .++||+||||||||+++|..|++ .      |++|+|||+.+.+
T Consensus         2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~   45 (456)
T 1lqt_A            2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   45 (456)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCC
Confidence            35799999999999999999999 7      9999999998654

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.60  E-value=0.00028  Score=68.28  Aligned_cols=105  Identities=10%  Similarity=0.128  Sum_probs=70.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||.+|+-+|..|++.|.+|+++++.+.....               .+   .        +.          
T Consensus       166 ~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~---------------~~---d--------~~----------  209 (369)
T 3d1c_A          166 KGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDP---------------DA---D--------PS----------  209 (369)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCEEEEECC------------------------------------CT----------
T ss_pred             CCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCC---------------CC---C--------CC----------
Confidence            347999999999999999999999999999987543100               00   0        00          


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcc-cccccCCCcccccccccccceEEeccEEEEee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLN-FKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~  201 (455)
                                                 ..+ ...+.+.+.+.+++.| +                   +++.+++|++++
T Consensus       210 ---------------------------~~~-~~~~~~~l~~~l~~~g~v-------------------~~~~~~~v~~i~  242 (369)
T 3d1c_A          210 ---------------------------VRL-SPYTRQRLGNVIKQGARI-------------------EMNVHYTVKDID  242 (369)
T ss_dssp             ---------------------------TSC-CHHHHHHHHHHHHTTCCE-------------------EEECSCCEEEEE
T ss_pred             ---------------------------ccC-CHHHHHHHHHHHhhCCcE-------------------EEecCcEEEEEE
Confidence                                       000 1234455666666665 6                   899999999997


Q ss_pred             ecCCceEEEEEeccCCcceeEEE-EeCEEEeecCCCc
Q 012845          202 ATDQCINVIASFLKEGKCTERNI-QCNILIGTDGAGS  237 (455)
Q Consensus       202 ~~~~~~~v~~~~~~~g~~~~~~~-~~d~vV~AdG~~S  237 (455)
                      .+++.+.+.+.   +|+    .+ .+|.||.|.|...
T Consensus       243 ~~~~~~~v~~~---~g~----~~~~~d~vi~a~G~~~  272 (369)
T 3d1c_A          243 FNNGQYHISFD---SGQ----SVHTPHEPILATGFDA  272 (369)
T ss_dssp             EETTEEEEEES---SSC----CEEESSCCEECCCBCG
T ss_pred             ecCCceEEEec---CCe----EeccCCceEEeeccCC
Confidence            66666556655   664    34 4699999999654

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.60  E-value=0.00044  Score=65.18  Aligned_cols=35  Identities=23%  Similarity=0.271  Sum_probs=32.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|+|||+|++|+-+|..|++.|.+|+++++.+.
T Consensus       144 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  178 (310)
T 1fl2_A          144 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE  178 (310)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcc
Confidence            46899999999999999999999999999998754

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.60  E-value=0.00065  Score=64.00  Aligned_cols=35  Identities=17%  Similarity=0.314  Sum_probs=32.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|+|||+|++|+-+|..|++.|.+|+++++.+.
T Consensus       143 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  177 (311)
T 2q0l_A          143 NKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDG  177 (311)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence            46899999999999999999999999999998754

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.60  E-value=0.00051  Score=70.09  Aligned_cols=33  Identities=27%  Similarity=0.403  Sum_probs=30.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      ..+|+|||||..|+-+|..|++.|.+|+|+++.
T Consensus       210 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~  242 (519)
T 3qfa_A          210 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS  242 (519)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc
Confidence            457999999999999999999999999999974

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.60  E-value=4.3e-05  Score=80.47  Aligned_cols=38  Identities=26%  Similarity=0.475  Sum_probs=35.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      ..+||+|||||++|+++|+.|++.|++|+|||+.+.+.
T Consensus       106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~g  143 (662)
T 2z3y_A          106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVG  143 (662)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSB
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            46799999999999999999999999999999987654

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.59  E-value=5.1e-05  Score=81.60  Aligned_cols=38  Identities=26%  Similarity=0.475  Sum_probs=35.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      ..++|+|||||++||++|+.|++.|++|+|||+.+.+.
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~G  314 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVG  314 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCC
Confidence            45799999999999999999999999999999988764

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.59  E-value=8e-05  Score=77.21  Aligned_cols=38  Identities=32%  Similarity=0.336  Sum_probs=34.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHh-CCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTK-LGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~-~g~~V~l~Er~~~~   78 (455)
                      +..+|++|||+|++|+.+|..|++ .|.+|+|+|+....
T Consensus        22 ~~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             cccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            467999999999999999999999 79999999998754

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.58  E-value=0.00032  Score=70.18  Aligned_cols=34  Identities=18%  Similarity=0.435  Sum_probs=31.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .+|+|||||..|+-+|..|++.|.+|+|+|+.+.
T Consensus       149 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  182 (449)
T 3kd9_A          149 ENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGER  182 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCc
Confidence            5899999999999999999999999999998764

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.57  E-value=0.0002  Score=71.39  Aligned_cols=36  Identities=31%  Similarity=0.421  Sum_probs=32.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+..
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l  182 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKI  182 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCC
T ss_pred             CcEEEEECCccchhhhHHHHHhcCCcceeeeeeccc
Confidence            347999999999999999999999999999987653

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.57  E-value=4.6e-05  Score=80.43  Aligned_cols=38  Identities=24%  Similarity=0.452  Sum_probs=34.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...+||+|||||+||+.+|..|++.|++|+|||+.+..
T Consensus       371 ~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~  408 (671)
T 1ps9_A          371 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI  408 (671)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            34689999999999999999999999999999998764

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.56  E-value=0.00069  Score=69.42  Aligned_cols=55  Identities=16%  Similarity=0.138  Sum_probs=41.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHH
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFR   96 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~   96 (455)
                      ...+|+|||+|.+|+-+|..|++.|.+|+|++|.+..-.......+.+.....|+
T Consensus       177 ~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~  231 (540)
T 3gwf_A          177 AGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIK  231 (540)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHH
T ss_pred             ccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHH
Confidence            3568999999999999999999999999999999863111223345555556665

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.55  E-value=3.2e-05  Score=79.31  Aligned_cols=37  Identities=32%  Similarity=0.395  Sum_probs=34.0

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...+|+||||||+||+.+|..|++ |.+|+|+|+....
T Consensus        24 ~~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~   60 (536)
T 1ju2_A           24 EGSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLP   60 (536)
T ss_dssp             EEEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCG
T ss_pred             cCcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCc
Confidence            356999999999999999999999 9999999998754

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.51  E-value=7.1e-05  Score=82.70  Aligned_cols=37  Identities=24%  Similarity=0.522  Sum_probs=33.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~~   78 (455)
                      ..+||+||||||||+++|..|++.|+ +|+|||+.+.+
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~  223 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYV  223 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCC
Confidence            46899999999999999999999999 79999997654

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.48  E-value=0.00089  Score=63.40  Aligned_cols=35  Identities=17%  Similarity=0.292  Sum_probs=31.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|+|||+|++|+-+|..|++.|.+|+++++.+.
T Consensus       155 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~  189 (319)
T 3cty_A          155 GKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPK  189 (319)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCc
Confidence            46899999999999999999999999999998653

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.48  E-value=0.00052  Score=68.99  Aligned_cols=36  Identities=22%  Similarity=0.477  Sum_probs=32.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+++.+..
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  207 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRA  207 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcC
Confidence            468999999999999999999999999999987654

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.47  E-value=6.5e-05  Score=75.52  Aligned_cols=37  Identities=24%  Similarity=0.354  Sum_probs=33.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g--~~V~l~Er~~~~   78 (455)
                      ..+||+||||||+|+.+|..|++.|  ++|+|||+.+.+
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~   43 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   43 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcC
Confidence            4579999999999999999999998  999999998754

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.45  E-value=0.0012  Score=68.56  Aligned_cols=33  Identities=27%  Similarity=0.351  Sum_probs=30.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      ..+|+|||||..|+-+|..|++.|.+|+|+++.
T Consensus       286 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          286 PGKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            357999999999999999999999999999986

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.43  E-value=0.0014  Score=62.16  Aligned_cols=35  Identities=20%  Similarity=0.413  Sum_probs=32.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus       152 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  186 (325)
T 2q7v_A          152 GKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDT  186 (325)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCc
Confidence            46899999999999999999999999999998754

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.42  E-value=0.00035  Score=71.71  Aligned_cols=55  Identities=13%  Similarity=0.172  Sum_probs=41.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHH
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFR   96 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~   96 (455)
                      ...+|+|||+|.+|+-+|..|++.+.+|+|++|.+..-.......+.+.....|+
T Consensus       184 ~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~  238 (545)
T 3uox_A          184 TGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCTPLGNSPMSKEKMDSLR  238 (545)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCCCEECCCCBCCHHHHHHHH
T ss_pred             CCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCccccCCcCCCCHHHHHHHH
Confidence            4568999999999999999999999999999999863221222334555555554

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=97.41  E-value=0.0011  Score=62.33  Aligned_cols=35  Identities=17%  Similarity=0.311  Sum_probs=32.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+.
T Consensus       147 ~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~  181 (315)
T 3r9u_A          147 NKEVAVLGGGDTALEEALYLANICSKIYLIHRRDE  181 (315)
T ss_dssp             TSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSS
T ss_pred             cCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCC
Confidence            46899999999999999999999999999998754

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=97.40  E-value=0.00013  Score=75.32  Aligned_cols=36  Identities=31%  Similarity=0.403  Sum_probs=33.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNK   76 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~-g~~V~l~Er~~   76 (455)
                      ...||+||||||.||+.+|..|++. +.+|+|||+.+
T Consensus        17 ~~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           17 GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CCCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            4579999999999999999999975 89999999987

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.38  E-value=0.001  Score=63.33  Aligned_cols=36  Identities=28%  Similarity=0.523  Sum_probs=32.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       159 ~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~  194 (333)
T 1vdc_A          159 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF  194 (333)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcC
Confidence            468999999999999999999999999999987643

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.35  E-value=9.2e-05  Score=77.65  Aligned_cols=37  Identities=27%  Similarity=0.450  Sum_probs=33.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCC--------CCEEEEcCCC-CC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLG--------IKCSVLEKNK-AF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g--------~~V~l~Er~~-~~   78 (455)
                      ..++|+|||||++||++|+.|++.|        ++|+|||+++ ..
T Consensus        55 ~~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           55 GNYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            3578999999999999999999998        9999999987 55

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.33  E-value=0.0012  Score=63.06  Aligned_cols=35  Identities=11%  Similarity=0.330  Sum_probs=32.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus       155 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~  189 (335)
T 2a87_A          155 DQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDE  189 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCc
Confidence            46899999999999999999999999999998754

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.32  E-value=0.00017  Score=73.32  Aligned_cols=37  Identities=24%  Similarity=0.468  Sum_probs=34.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      .++|++|||+|++|+.+|..|++.|.+|+|+|+....
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~   40 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLW   40 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            4689999999999999999999999999999998743

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=97.31  E-value=0.00022  Score=73.32  Aligned_cols=37  Identities=16%  Similarity=0.308  Sum_probs=34.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~-g~~V~l~Er~~~~   78 (455)
                      ..+|++|||+|++|+.+|..|++. |.+|+|+|+....
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~   49 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD   49 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence            579999999999999999999998 9999999998654

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=97.29  E-value=0.0012  Score=62.50  Aligned_cols=35  Identities=17%  Similarity=0.349  Sum_probs=32.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus       154 ~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~  188 (332)
T 3lzw_A          154 GRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDK  188 (332)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSS
T ss_pred             CCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCc
Confidence            46899999999999999999999999999998754

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.29  E-value=0.0002  Score=72.85  Aligned_cols=38  Identities=32%  Similarity=0.586  Sum_probs=34.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..++|++|||+|++|+.+|..|++.|.+|+|+|+....
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~   46 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSW   46 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            35799999999999999999999999999999998643

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.24  E-value=0.00038  Score=72.09  Aligned_cols=40  Identities=10%  Similarity=0.272  Sum_probs=37.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST   80 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~   80 (455)
                      .++|||+|||+|+.|+.+|..|++.|.+|+++||++....
T Consensus         6 ~~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg   45 (650)
T 1vg0_A            6 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGG   45 (650)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             CCcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccC
Confidence            4579999999999999999999999999999999998753

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.23  E-value=0.00013  Score=74.99  Aligned_cols=36  Identities=31%  Similarity=0.352  Sum_probs=33.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHh-CCCCEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTK-LGIKCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~-~g~~V~l~Er~~~~   78 (455)
                      .||+||||||+||+.+|..|++ .|.+|+|||+.+..
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            4899999999999999999999 69999999998654

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=97.21  E-value=0.0025  Score=60.10  Aligned_cols=36  Identities=19%  Similarity=0.340  Sum_probs=32.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+..
T Consensus       154 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~  189 (323)
T 3f8d_A          154 NRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTF  189 (323)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCC
Confidence            468999999999999999999999999999987543

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.20  E-value=0.0028  Score=63.49  Aligned_cols=36  Identities=19%  Similarity=0.392  Sum_probs=30.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC--------------------CC-CEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKL--------------------GI-KCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~--------------------g~-~V~l~Er~~~~   78 (455)
                      ..+|+|||+|.+|+-+|..|++.                    |. +|+|++|+...
T Consensus       147 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~  203 (456)
T 1lqt_A          147 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL  203 (456)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChh
Confidence            45799999999999999999974                    65 89999998654

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.17  E-value=0.0048  Score=61.81  Aligned_cols=36  Identities=17%  Similarity=0.322  Sum_probs=31.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHH--------------------hCCC-CEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLT--------------------KLGI-KCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La--------------------~~g~-~V~l~Er~~~~   78 (455)
                      ..+|+|||+|..|+-+|..|+                    +.|. +|+|++|+...
T Consensus       145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~  201 (460)
T 1cjc_A          145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL  201 (460)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChH
Confidence            468999999999999999999                    6788 69999998654

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.08  E-value=0.003  Score=64.33  Aligned_cols=35  Identities=23%  Similarity=0.271  Sum_probs=32.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|+|||||.+|+-+|..|++.|.+|+++++.+.
T Consensus       355 ~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~  389 (521)
T 1hyu_A          355 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE  389 (521)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcc
Confidence            46899999999999999999999999999998754

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.04  E-value=0.00053  Score=70.40  Aligned_cols=55  Identities=11%  Similarity=0.155  Sum_probs=39.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHH
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFR   96 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~   96 (455)
                      ...+|+|||+|.+|+-+|..|++.+.+|++++|.+..-.......+++.....++
T Consensus       190 ~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~ilp~~~~~~~~~~~~~l~  244 (549)
T 4ap3_A          190 TGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANYSIPAGNVPLDDATRAEQK  244 (549)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECC----CHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCcCCCCCHHHHHHHH
Confidence            4568999999999999999999999999999999863111122334555555555

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=96.94  E-value=0.0016  Score=60.68  Aligned_cols=33  Identities=12%  Similarity=0.324  Sum_probs=30.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ..+|+|||+|++|+-+|..|++.| +|+++++.+
T Consensus       141 ~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~  173 (297)
T 3fbs_A          141 QGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGI  173 (297)
T ss_dssp             TCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTT
T ss_pred             CCEEEEEecCccHHHHHHHhhhcC-cEEEEECCC
Confidence            468999999999999999999999 999998654

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=96.61  E-value=0.017  Score=54.17  Aligned_cols=35  Identities=29%  Similarity=0.462  Sum_probs=32.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|+|||||..|+-+|..|++.|.+|+|+||...
T Consensus       152 ~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~  186 (314)
T 4a5l_A          152 NKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDA  186 (314)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHhCCeeeeeccccc
Confidence            36799999999999999999999999999998654

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=96.51  E-value=0.0028  Score=61.99  Aligned_cols=37  Identities=19%  Similarity=0.170  Sum_probs=34.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+.+.
T Consensus       146 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l  182 (385)
T 3klj_A          146 KGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPL  182 (385)
T ss_dssp             HSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccc
Confidence            4689999999999999999999999999999988764

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=96.48  E-value=0.0067  Score=64.43  Aligned_cols=34  Identities=15%  Similarity=0.104  Sum_probs=31.6

Q ss_pred             ccCEEEEC--CCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVG--AGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVG--gG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ..+|+|||  ||..|+-+|..|++.|.+|+|+++.+
T Consensus       528 gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          528 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence            35899998  99999999999999999999999876

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=96.47  E-value=0.0089  Score=65.51  Aligned_cols=34  Identities=12%  Similarity=0.133  Sum_probs=31.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .+|+|||+|+.|+-+|..|++.|.+|+|+|+.+.
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~  318 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSS  318 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSS
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCc
Confidence            5899999999999999999999999999998754

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.33  E-value=0.0031  Score=52.97  Aligned_cols=35  Identities=26%  Similarity=0.429  Sum_probs=32.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ...|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            46799999999999999999999999999998754

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.33  E-value=0.005  Score=50.69  Aligned_cols=36  Identities=31%  Similarity=0.380  Sum_probs=32.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .+-.|+|||+|..|..+|..|.+.|++|+++|+++.
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~   41 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRT   41 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            456899999999999999999999999999998753

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=96.29  E-value=0.0033  Score=59.17  Aligned_cols=33  Identities=15%  Similarity=0.356  Sum_probs=30.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      .+|.|||+|..|..+|..|+++|++|+++|+++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            369999999999999999999999999999874

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=96.27  E-value=0.016  Score=60.90  Aligned_cols=28  Identities=29%  Similarity=0.439  Sum_probs=25.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEE
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCS   70 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~   70 (455)
                      ..+|+|||||..|+-+|..|++.|.+|+
T Consensus       494 ~~~VvVIGgG~~g~E~A~~l~~~G~~vt  521 (671)
T 1ps9_A          494 GNKVAIIGCGGIGFDTAMYLSQPGESTS  521 (671)
T ss_dssp             CSEEEEECCHHHHHHHHHHHTCCSSCGG
T ss_pred             CCeEEEECCChhHHHHHHHHHhcCCCcc
Confidence            4689999999999999999999987664

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.23  E-value=0.0054  Score=51.30  Aligned_cols=35  Identities=11%  Similarity=0.180  Sum_probs=31.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      .+..|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            34679999999999999999999999999999864

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.11  E-value=0.0047  Score=50.39  Aligned_cols=33  Identities=27%  Similarity=0.495  Sum_probs=30.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      .+|+|||+|..|..+|..|.+.|++|+++|+++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            479999999999999999999999999999854

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=96.05  E-value=0.045  Score=60.40  Aligned_cols=33  Identities=15%  Similarity=0.264  Sum_probs=30.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      .+|+|||||..|+-+|..|++.|. +|+|+++.+
T Consensus       333 ~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          333 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CcEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            489999999999999999999997 899999875

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.05  E-value=0.005  Score=48.57  Aligned_cols=33  Identities=24%  Similarity=0.460  Sum_probs=30.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g-~~V~l~Er~~   76 (455)
                      .+|+|+|+|..|..++..|.+.| ++|.+++|++
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            47999999999999999999999 8999999864

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=96.03  E-value=0.0078  Score=61.60  Aligned_cols=37  Identities=22%  Similarity=0.353  Sum_probs=33.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...+|+|||+|.+|+-+|..|++.|.+|++++|.+..
T Consensus       185 ~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~  221 (542)
T 1w4x_A          185 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHF  221 (542)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             CCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcc
Confidence            3568999999999999999999999999999998754

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.00  E-value=0.0075  Score=49.52  Aligned_cols=33  Identities=27%  Similarity=0.394  Sum_probs=30.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ..|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            479999999999999999999999999999864

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=95.99  E-value=0.016  Score=57.80  Aligned_cols=37  Identities=16%  Similarity=0.180  Sum_probs=32.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~-V~l~Er~~~~   78 (455)
                      ...+|+|||||..|+-+|..|.+.|.+ |++++|++..
T Consensus       263 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~  300 (456)
T 2vdc_G          263 AGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRK  300 (456)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCST
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCcc
Confidence            346899999999999999999999985 9999987643

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=95.93  E-value=0.039  Score=54.62  Aligned_cols=56  Identities=14%  Similarity=0.116  Sum_probs=36.6

Q ss_pred             HHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCc-ceeEEEEeCEEEeecCC
Q 012845          158 NKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGK-CTERNIQCNILIGTDGA  235 (455)
Q Consensus       158 ~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~-~~~~~~~~d~vV~AdG~  235 (455)
                      .+.+.+.+++.|+                   +++.+++|++++.  +.+.+.... .+|. ....++.+|+||.|.|.
T Consensus       211 ~~~~~~~l~~~gI-------------------~~~~~~~v~~v~~--~~v~~~~~~-~~g~~~~~~~i~~D~vv~~~g~  267 (437)
T 3sx6_A          211 KGILTKGLKEEGI-------------------EAYTNCKVTKVED--NKMYVTQVD-EKGETIKEMVLPVKFGMMIPAF  267 (437)
T ss_dssp             HHHHHHHHHHTTC-------------------EEECSEEEEEEET--TEEEEEEEC-TTSCEEEEEEEECSEEEEECCE
T ss_pred             HHHHHHHHHHCCC-------------------EEEcCCEEEEEEC--CeEEEEecc-cCCccccceEEEEeEEEEcCCC
Confidence            3446666777786                   9999999999864  344443321 1222 11347899999999883

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=95.83  E-value=0.0076  Score=56.11  Aligned_cols=35  Identities=17%  Similarity=0.348  Sum_probs=31.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTD   38 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            35799999999999999999999999999998753

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=95.79  E-value=0.0079  Score=56.57  Aligned_cols=36  Identities=17%  Similarity=0.376  Sum_probs=33.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+..
T Consensus       145 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  180 (312)
T 4gcm_A          145 NKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDEL  180 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeccccc
Confidence            358999999999999999999999999999998754

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=95.69  E-value=0.0077  Score=56.89  Aligned_cols=34  Identities=29%  Similarity=0.472  Sum_probs=31.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ..+|.|||+|..|...|..++.+|++|+|+|.++
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3579999999999999999999999999999764

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=95.56  E-value=0.01  Score=55.66  Aligned_cols=37  Identities=14%  Similarity=0.154  Sum_probs=33.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ++.+|.|||.|..|..+|..|++.|++|++++|++..
T Consensus        14 ~~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~   50 (296)
T 3qha_A           14 EQLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEA   50 (296)
T ss_dssp             -CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTT
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence            3568999999999999999999999999999998753

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=95.42  E-value=0.013  Score=55.95  Aligned_cols=36  Identities=17%  Similarity=0.253  Sum_probs=32.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~   77 (455)
                      ++.+|+|||+|-.|.++|..|++.|+ +|.++|++..
T Consensus         8 ~~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~   44 (331)
T 1pzg_A            8 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   44 (331)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            34689999999999999999999998 9999998753

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.36  E-value=0.015  Score=50.04  Aligned_cols=34  Identities=26%  Similarity=0.219  Sum_probs=31.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~-g~~V~l~Er~~   76 (455)
                      ...|+|||+|..|..+|..|.+. |++|+++|+++
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            45799999999999999999999 99999999864

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=95.36  E-value=0.016  Score=55.75  Aligned_cols=34  Identities=29%  Similarity=0.522  Sum_probs=31.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ..+|.|||+|-.|.++|..|++.|++|++++|++
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4689999999999999999999999999999864

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=95.32  E-value=0.015  Score=47.49  Aligned_cols=33  Identities=18%  Similarity=0.332  Sum_probs=30.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ..|+|+|+|..|..+|..|.+.|++|+++|++.
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999999864

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=95.25  E-value=0.014  Score=55.57  Aligned_cols=33  Identities=15%  Similarity=0.319  Sum_probs=30.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ..+|+|||+|.+|+-+|..|++.| +|+++.+..
T Consensus       163 ~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~  195 (357)
T 4a9w_A          163 GMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHE  195 (357)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSC
T ss_pred             CCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCC
Confidence            468999999999999999999998 699999874

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.23  E-value=0.015  Score=55.09  Aligned_cols=32  Identities=31%  Similarity=0.614  Sum_probs=30.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      .+|+|||+|-.|.++|..|++.|.+|++++|+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~   34 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRS   34 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            47999999999999999999999999999985

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=95.10  E-value=0.07  Score=52.18  Aligned_cols=51  Identities=12%  Similarity=0.183  Sum_probs=37.3

Q ss_pred             hHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCC
Q 012845          156 KLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGA  235 (455)
Q Consensus       156 ~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~  235 (455)
                      .+.+.+.+.+++.|+                   +++.+++|++++.+  .  +++.   +|+    ++.+|+||.|.|.
T Consensus       219 ~~~~~~~~~l~~~gV-------------------~~~~~~~v~~i~~~--~--v~~~---~g~----~~~~D~vi~a~G~  268 (409)
T 3h8l_A          219 NSRKAVASIYNQLGI-------------------KLVHNFKIKEIREH--E--IVDE---KGN----TIPADITILLPPY  268 (409)
T ss_dssp             HHHHHHHHHHHHHTC-------------------EEECSCCEEEECSS--E--EEET---TSC----EEECSEEEEECCE
T ss_pred             HHHHHHHHHHHHCCC-------------------EEEcCCceEEECCC--e--EEEC---CCC----EEeeeEEEECCCC
Confidence            344456666677776                   99999999998753  2  4444   665    7899999999995


Q ss_pred             C
Q 012845          236 G  236 (455)
Q Consensus       236 ~  236 (455)
                      .
T Consensus       269 ~  269 (409)
T 3h8l_A          269 T  269 (409)
T ss_dssp             E
T ss_pred             C
Confidence            4

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=95.09  E-value=0.017  Score=54.74  Aligned_cols=36  Identities=11%  Similarity=0.326  Sum_probs=32.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~   77 (455)
                      +..+|+|||+|-.|..+|..|++.|+ +|.++|++..
T Consensus         3 ~~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~   39 (317)
T 2ewd_A            3 ERRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEG   39 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCch
Confidence            34579999999999999999999998 9999998753

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=95.03  E-value=0.018  Score=54.05  Aligned_cols=34  Identities=24%  Similarity=0.215  Sum_probs=31.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ..+|.|||.|-.|..+|..|++.|++|++++|++
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4579999999999999999999999999999874

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=95.03  E-value=0.019  Score=54.19  Aligned_cols=32  Identities=34%  Similarity=0.564  Sum_probs=29.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      .+|+|||+|-.|.++|..|++.|.+|++++|+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~   34 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRR   34 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcC
Confidence            47999999999999999999999999999985

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=95.03  E-value=0.018  Score=55.39  Aligned_cols=34  Identities=15%  Similarity=0.196  Sum_probs=31.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ..+|+|||+|-.|..+|..|++.|++|++++|++
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3579999999999999999999999999999864

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=95.02  E-value=0.029  Score=55.68  Aligned_cols=34  Identities=26%  Similarity=0.483  Sum_probs=31.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            4799999999999999999999999999998865

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=94.98  E-value=0.023  Score=54.22  Aligned_cols=32  Identities=38%  Similarity=0.470  Sum_probs=30.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      .+|+|||+|-.|.++|..|++.|++|++++|.
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            47999999999999999999999999999974

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=94.97  E-value=0.019  Score=50.97  Aligned_cols=33  Identities=15%  Similarity=0.299  Sum_probs=30.8

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +|+|||+|..|..+|..|.+.|++|+++|+++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~   34 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRE   34 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            699999999999999999999999999998753

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=94.95  E-value=0.021  Score=53.84  Aligned_cols=36  Identities=19%  Similarity=0.301  Sum_probs=32.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      +...+|.|||+|..|..+|..|++.|+ +|.++|+++
T Consensus         6 ~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~   42 (315)
T 3tl2_A            6 IKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQ   42 (315)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGG
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccc
Confidence            445689999999999999999999999 999999873

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=94.91  E-value=0.34  Score=48.74  Aligned_cols=36  Identities=14%  Similarity=0.244  Sum_probs=31.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~   78 (455)
                      ..+|+|||+|-+|.-++..|++.  +.+|+++=|.+..
T Consensus       246 gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~~  283 (501)
T 4b63_A          246 PYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSAM  283 (501)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSSC
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence            35799999999999999999875  6789999988654

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=94.84  E-value=0.034  Score=52.26  Aligned_cols=36  Identities=19%  Similarity=0.447  Sum_probs=32.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ...+|.|||.|..|..+|..|++.|++|++++|++.
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   43 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPG   43 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            346899999999999999999999999999998753

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=94.77  E-value=0.028  Score=49.63  Aligned_cols=35  Identities=14%  Similarity=0.243  Sum_probs=31.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|.|||+|-.|.++|..|++.|++|++++|++.
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            45799999999999999999999999999998865

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=94.71  E-value=0.028  Score=52.15  Aligned_cols=33  Identities=18%  Similarity=0.283  Sum_probs=31.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +|.|||+|..|.++|..|++.|++|++++|++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            599999999999999999999999999998764

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=94.70  E-value=0.025  Score=52.77  Aligned_cols=35  Identities=17%  Similarity=0.329  Sum_probs=31.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ..+.+|.|||+|..|...|..|+ +|++|+++|+++
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            45689999999999999999999 999999999875

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=94.67  E-value=0.024  Score=56.51  Aligned_cols=35  Identities=29%  Similarity=0.348  Sum_probs=32.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ...+|.|||.|.+|+++|..|+++|++|+++|++.
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            34689999999999999999999999999999875

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=94.65  E-value=0.031  Score=56.10  Aligned_cols=35  Identities=17%  Similarity=0.342  Sum_probs=31.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   39 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAE   39 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            35799999999999999999999999999998753

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=94.57  E-value=0.024  Score=53.00  Aligned_cols=33  Identities=21%  Similarity=0.402  Sum_probs=31.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      .+|+|||+|-.|.++|..|++.|.+|++++|+.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            479999999999999999999999999999874

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=94.55  E-value=0.038  Score=49.20  Aligned_cols=35  Identities=20%  Similarity=0.190  Sum_probs=31.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      .....|+|||||..|...|..|.+.|.+|+|++..
T Consensus        29 L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           29 LKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            34578999999999999999999999999999964

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=94.54  E-value=0.037  Score=52.19  Aligned_cols=35  Identities=20%  Similarity=0.258  Sum_probs=32.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|.|||+|..|..+|..|++.|++|+++++++.
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            35799999999999999999999999999998754

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=94.50  E-value=0.029  Score=52.64  Aligned_cols=32  Identities=28%  Similarity=0.499  Sum_probs=30.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +|.|||+|-.|..+|..|++.|++|++++|++
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            5 KIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            69999999999999999999999999999863

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=94.35  E-value=0.033  Score=53.58  Aligned_cols=37  Identities=24%  Similarity=0.339  Sum_probs=32.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +...+|.|||.|..|..+|..|++.|++|++++|++.
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~   56 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVN   56 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            3456899999999999999999999999999998753

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=94.31  E-value=0.04  Score=52.21  Aligned_cols=35  Identities=20%  Similarity=0.447  Sum_probs=31.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~   77 (455)
                      ..+|+|||+|-.|..+|..|+..|+ +|.++|.+..
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~   39 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN   39 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHH
Confidence            3579999999999999999999998 9999998743

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=94.31  E-value=0.029  Score=55.71  Aligned_cols=36  Identities=22%  Similarity=0.286  Sum_probs=32.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..+|+|||.|.+|+++|..|+++|++|+++|.+..+
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~   40 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSC
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCc
Confidence            357999999999999999999999999999987654

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=94.26  E-value=0.025  Score=54.55  Aligned_cols=35  Identities=23%  Similarity=0.344  Sum_probs=32.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|+|||+|.+|+.+|..|...|.+|+++|+++.
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  218 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRPE  218 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGG
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999998854

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=94.23  E-value=0.041  Score=53.48  Aligned_cols=35  Identities=26%  Similarity=0.390  Sum_probs=32.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|+|+|+|++|+.+|..|...|.+|+++|+++.
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            46899999999999999999999999999998864

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=94.15  E-value=0.044  Score=52.08  Aligned_cols=34  Identities=21%  Similarity=0.456  Sum_probs=31.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~   77 (455)
                      .+|.|||+|-.|..+|..|++.|+ +|.++|++..
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~   49 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEG   49 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence            579999999999999999999999 9999998753

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=94.14  E-value=0.037  Score=55.01  Aligned_cols=34  Identities=26%  Similarity=0.564  Sum_probs=31.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .+|.|||.|-.|+.+|..|++.|++|+++|+++.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~   36 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRN   36 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHH
Confidence            4799999999999999999999999999998753

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=94.09  E-value=0.027  Score=53.08  Aligned_cols=31  Identities=23%  Similarity=0.441  Sum_probs=29.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC-----C-CCEEEEcC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKL-----G-IKCSVLEK   74 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~-----g-~~V~l~Er   74 (455)
                      .+|.|||+|..|.++|..|++.     | ++|++++|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            4799999999999999999999     9 99999987

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=94.09  E-value=0.054  Score=51.66  Aligned_cols=34  Identities=24%  Similarity=0.230  Sum_probs=31.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ..+|.|||.|..|.++|..|++.|++|.++++++
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999999864

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=94.07  E-value=0.041  Score=52.38  Aligned_cols=36  Identities=22%  Similarity=0.410  Sum_probs=31.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      .+..+|.|||+|-.|.++|..|++.|++|++++|++
T Consensus        12 ~~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~   47 (335)
T 1z82_A           12 HMEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK   47 (335)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            346789999999999999999999999999999863

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=94.05  E-value=0.041  Score=51.78  Aligned_cols=34  Identities=29%  Similarity=0.432  Sum_probs=31.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .+|.|||.|..|..+|..|++.|++|++++|++.
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4799999999999999999999999999999864

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=94.01  E-value=0.048  Score=51.57  Aligned_cols=35  Identities=23%  Similarity=0.267  Sum_probs=30.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~   76 (455)
                      .+.+|+|||+|-.|.++|..|+..|+  +|.++|.+.
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            35789999999999999999999998  899999874

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=93.97  E-value=0.04  Score=52.15  Aligned_cols=35  Identities=23%  Similarity=0.404  Sum_probs=32.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|.|||.|..|..+|..|++.|++|++++|++.
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   65 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPA   65 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHH
Confidence            35799999999999999999999999999998753

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=93.96  E-value=0.045  Score=49.62  Aligned_cols=36  Identities=19%  Similarity=0.398  Sum_probs=32.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ...+|.|||+|-.|.++|..|++.|++|++++|++.
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~   53 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK   53 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            456899999999999999999999999999998754

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=93.94  E-value=0.046  Score=51.63  Aligned_cols=33  Identities=27%  Similarity=0.464  Sum_probs=30.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~   76 (455)
                      .+|+|||+|-.|.++|..|++.|+  +|+++|++.
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            479999999999999999999998  999999864

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=93.91  E-value=0.032  Score=49.70  Aligned_cols=34  Identities=26%  Similarity=0.373  Sum_probs=31.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEE-EcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSV-LEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l-~Er~~~   77 (455)
                      .+|.|||+|-.|.++|..|++.|++|++ ++|++.
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~   58 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPA   58 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHH
Confidence            4799999999999999999999999999 888754

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=93.85  E-value=0.057  Score=54.17  Aligned_cols=37  Identities=16%  Similarity=0.319  Sum_probs=32.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +.+.+|.|||.|..|..+|..|+++|++|++++|++.
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~   49 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSRE   49 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHH
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4567899999999999999999999999999998753

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=93.83  E-value=0.039  Score=55.10  Aligned_cols=35  Identities=20%  Similarity=0.386  Sum_probs=32.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC-CC-CEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKL-GI-KCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~-g~-~V~l~Er~~~   77 (455)
                      ..+|.|||+|-.|+.+|..|+++ |+ +|+++|+++.
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            35799999999999999999999 99 9999999876

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=93.81  E-value=0.051  Score=54.26  Aligned_cols=34  Identities=24%  Similarity=0.467  Sum_probs=31.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .+|.|||+|..|..+|..|+++|++|+++|+++.
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~   71 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPK   71 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            3699999999999999999999999999998753

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=93.81  E-value=0.065  Score=47.49  Aligned_cols=33  Identities=30%  Similarity=0.319  Sum_probs=30.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      .+|.|||+|-.|..+|..|++.|++|.+++|+.
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            579999999999999999999999999999874

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=93.80  E-value=0.058  Score=49.39  Aligned_cols=34  Identities=24%  Similarity=0.511  Sum_probs=30.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~-V~l~Er~~   76 (455)
                      ..+|.|||+|-.|..+|..|++.|++ |.+++|++
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            35799999999999999999999999 89999864

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=93.79  E-value=0.047  Score=54.71  Aligned_cols=34  Identities=29%  Similarity=0.539  Sum_probs=31.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ..+|.|||.|-.|+.+|..|++.|++|+++|+++
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4689999999999999999999999999999874

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=93.75  E-value=0.017  Score=51.73  Aligned_cols=32  Identities=22%  Similarity=0.236  Sum_probs=30.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEK   74 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er   74 (455)
                      ..+|.|||.|..|.++|..|+++|++|+++++
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~   37 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHA   37 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTCEEEECSS
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecC
Confidence            45799999999999999999999999999998

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=93.72  E-value=0.051  Score=51.07  Aligned_cols=32  Identities=28%  Similarity=0.529  Sum_probs=29.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      .+|+|||+|-.|.++|..|+ .|.+|++++|+.
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            47999999999999999999 999999999864

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=93.70  E-value=0.061  Score=50.75  Aligned_cols=34  Identities=32%  Similarity=0.373  Sum_probs=31.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~   76 (455)
                      ..+|.|||.|..|.++|..|++.|+  +|.++|+++
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            3579999999999999999999999  899999864

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=93.69  E-value=0.049  Score=50.62  Aligned_cols=34  Identities=18%  Similarity=0.310  Sum_probs=31.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .+|.|||.|..|..+|..|++.|++|++++|++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            3699999999999999999999999999999865

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=93.66  E-value=0.051  Score=51.49  Aligned_cols=34  Identities=35%  Similarity=0.495  Sum_probs=30.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKN   75 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~   75 (455)
                      ...+|+|||+|..|.++|..|+..|+  ++.++|.+
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~   39 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVN   39 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence            45689999999999999999999997  89999975

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=93.59  E-value=0.061  Score=50.91  Aligned_cols=36  Identities=22%  Similarity=0.265  Sum_probs=31.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCC----CCEEEEcCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLG----IKCSVLEKNKA   77 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g----~~V~l~Er~~~   77 (455)
                      ...+|.|||+|-.|.++|..|++.|    ++|++++|+..
T Consensus        21 ~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~   60 (322)
T 2izz_A           21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMD   60 (322)
T ss_dssp             -CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCcc
Confidence            3457999999999999999999999    79999998754

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=93.59  E-value=0.024  Score=46.67  Aligned_cols=34  Identities=21%  Similarity=0.249  Sum_probs=31.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ..+|+|||+|..|..+|..|++.|++|++++|+.
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            4579999999999999999999999999999874

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=93.54  E-value=0.054  Score=54.12  Aligned_cols=35  Identities=23%  Similarity=0.100  Sum_probs=32.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|+|||||.+|+-+|..|++.|.+|+|+++.+.
T Consensus       197 ~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~  231 (464)
T 2xve_A          197 DKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA  231 (464)
T ss_dssp             TSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCC
Confidence            46899999999999999999999999999998765

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=93.48  E-value=0.044  Score=52.85  Aligned_cols=32  Identities=25%  Similarity=0.461  Sum_probs=30.2

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +|.|||+|-.|.++|..|++.|++|++++|++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            69999999999999999999999999999863

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=93.47  E-value=0.069  Score=52.97  Aligned_cols=36  Identities=19%  Similarity=0.002  Sum_probs=32.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~-V~l~Er~~~~   78 (455)
                      ..+|+|||||.+|+-+|..|++.|.+ |+|++|.+..
T Consensus       212 ~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~  248 (447)
T 2gv8_A          212 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD  248 (447)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS
T ss_pred             CCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence            46899999999999999999999999 9999997643

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=93.46  E-value=0.062  Score=53.24  Aligned_cols=36  Identities=25%  Similarity=0.457  Sum_probs=33.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..+|.|||.|-.|+.+|..|+++|++|+++|+++..
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~k   43 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARK   43 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTT
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            468999999999999999999999999999998753

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=93.44  E-value=0.054  Score=50.55  Aligned_cols=34  Identities=21%  Similarity=0.379  Sum_probs=31.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ..+|.|||+|-.|...|..|++.|++|+++++++
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4579999999999999999999999999999874

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=93.43  E-value=0.032  Score=51.34  Aligned_cols=35  Identities=26%  Similarity=0.389  Sum_probs=31.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ....|+|||||-.|+..|..|.+.|.+|+|++...
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            35679999999999999999999999999999654

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=93.39  E-value=0.061  Score=50.84  Aligned_cols=32  Identities=28%  Similarity=0.438  Sum_probs=29.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      ..+|+|||+|-.|.++|..|++.|++|+++ ++
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~   50 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-AR   50 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-Ec
Confidence            467999999999999999999999999999 65

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=93.39  E-value=0.072  Score=50.38  Aligned_cols=35  Identities=14%  Similarity=0.267  Sum_probs=31.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~   77 (455)
                      ..+|.|||+|-.|.++|..|+..|+ +|.++|.+..
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~   42 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEG   42 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence            4579999999999999999999999 9999998754

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=93.39  E-value=0.044  Score=51.82  Aligned_cols=34  Identities=9%  Similarity=0.085  Sum_probs=31.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g-~~V~l~Er~~~   77 (455)
                      .+|.|||.|-.|..+|..|++.| ++|+++++++.
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~   59 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFN   59 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence            46999999999999999999999 99999999863

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=93.36  E-value=0.051  Score=50.48  Aligned_cols=33  Identities=24%  Similarity=0.364  Sum_probs=31.2

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +|.|||.|..|..+|..|++.|++|++++|++.
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            699999999999999999999999999999864

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=93.34  E-value=0.053  Score=49.32  Aligned_cols=34  Identities=32%  Similarity=0.471  Sum_probs=31.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|++.
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            5689999999999999999999998 799999875

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=93.33  E-value=0.068  Score=50.16  Aligned_cols=32  Identities=25%  Similarity=0.398  Sum_probs=30.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~   76 (455)
                      +|+|||+|-.|.++|..|+..|+  +|.++|++.
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            69999999999999999999998  899999864

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=93.33  E-value=0.071  Score=48.63  Aligned_cols=35  Identities=14%  Similarity=0.138  Sum_probs=31.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCC----CCEEEEcCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLG----IKCSVLEKNKAF   78 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g----~~V~l~Er~~~~   78 (455)
                      .+|.|||+|-.|.++|..|++.|    ++|.+++|++..
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~   43 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN   43 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc
Confidence            47999999999999999999999    699999998653

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=93.30  E-value=0.087  Score=52.69  Aligned_cols=35  Identities=11%  Similarity=0.284  Sum_probs=32.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|.|||.|..|..+|..|+++|++|++++|++.
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~   38 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   38 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35799999999999999999999999999999864

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=93.29  E-value=0.058  Score=50.33  Aligned_cols=33  Identities=30%  Similarity=0.363  Sum_probs=30.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      .+|.|||+|..|..+|..|++.|++|.++++++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            479999999999999999999999999999864

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=93.27  E-value=0.036  Score=55.33  Aligned_cols=34  Identities=26%  Similarity=0.426  Sum_probs=31.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ++|+|+|+|-.|..+|..|...|++|+|+|+++.
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~   37 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENNDITIVDKDGD   37 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            4699999999999999999999999999999853

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=93.25  E-value=0.095  Score=53.21  Aligned_cols=36  Identities=14%  Similarity=0.336  Sum_probs=33.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      .+|+|||||..|+-+|..|++.|.+|+|+|+.+.+.
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l  250 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK  250 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccc
Confidence            689999999999999999999999999999987653

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=93.21  E-value=0.048  Score=51.01  Aligned_cols=35  Identities=17%  Similarity=0.326  Sum_probs=27.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      .+|.+||-|..|..+|..|.++|++|++|+|++..
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~   40 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASK   40 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC------
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence            46999999999999999999999999999998754

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=93.20  E-value=0.067  Score=52.62  Aligned_cols=34  Identities=26%  Similarity=0.430  Sum_probs=30.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|.|||.|-.|+.+|..|++ |++|+++|+++.
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~   69 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQA   69 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHH
Confidence            3579999999999999999999 999999998754

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=93.15  E-value=0.094  Score=48.53  Aligned_cols=35  Identities=14%  Similarity=0.257  Sum_probs=31.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC---CEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGI---KCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~---~V~l~Er~~~   77 (455)
                      ..+|.|||+|-.|.++|..|.+.|+   +|.+++|++.
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~   40 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLD   40 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHH
Confidence            3579999999999999999999999   8999998753

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=93.11  E-value=0.088  Score=48.79  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=30.5

Q ss_pred             cCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           44 VPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGg-G~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      .+|.|||+ |-.|..+|..|++.|++|++++|++
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            36999999 9999999999999999999999863

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=93.10  E-value=0.093  Score=52.79  Aligned_cols=36  Identities=11%  Similarity=0.209  Sum_probs=33.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +..+|.|||.|..|..+|..|+++|++|++++|++.
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~   44 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQS   44 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSH
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            456899999999999999999999999999999753

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=93.09  E-value=0.063  Score=50.58  Aligned_cols=33  Identities=12%  Similarity=0.224  Sum_probs=31.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      .+|.|||.|..|..+|..|++.|+ +|+++++++
T Consensus        25 ~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~   58 (312)
T 3qsg_A           25 MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAAS   58 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            579999999999999999999999 999999974

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=93.03  E-value=0.092  Score=49.61  Aligned_cols=35  Identities=20%  Similarity=0.300  Sum_probs=31.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~   77 (455)
                      ..+|.|||+|..|.++|..|+..|+ +|.++|.+..
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~   40 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQG   40 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChH
Confidence            4579999999999999999999988 9999998753

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=92.88  E-value=0.11  Score=52.08  Aligned_cols=34  Identities=15%  Similarity=0.269  Sum_probs=31.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +.+|.|||.|..|..+|..|+++|++|.+++|++
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~   38 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTT   38 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            4679999999999999999999999999999874

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=92.86  E-value=0.11  Score=48.57  Aligned_cols=34  Identities=26%  Similarity=0.438  Sum_probs=31.1

Q ss_pred             cCEEEEC-CCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVG-AGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVG-gG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .+|.||| .|-.|.++|..|++.|++|+++++++.
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~   56 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   56 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            3699999 999999999999999999999998653

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=92.81  E-value=0.1  Score=51.27  Aligned_cols=35  Identities=31%  Similarity=0.480  Sum_probs=32.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +..|+|||.|..|..+|..|.+.|++|+++|+++.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            35799999999999999999999999999999854

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=92.80  E-value=0.079  Score=51.79  Aligned_cols=35  Identities=23%  Similarity=0.358  Sum_probs=31.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ...|+|+|+|.+|+.+|..|...|.+|+++|+++.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~  206 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  206 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            46799999999999999999999999999998754

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=92.76  E-value=0.092  Score=51.01  Aligned_cols=35  Identities=26%  Similarity=0.325  Sum_probs=32.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|+|+|+|.+|+.+|..|...|.+|+++|+++.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~  206 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA  206 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999998754

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=92.71  E-value=0.1  Score=49.14  Aligned_cols=33  Identities=21%  Similarity=0.368  Sum_probs=29.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~   77 (455)
                      +|+|||+|-.|..+|..|++.  |.+|.++|++..
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~   36 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChh
Confidence            699999999999999999985  789999999753

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=92.66  E-value=0.073  Score=50.46  Aligned_cols=30  Identities=33%  Similarity=0.463  Sum_probs=28.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEK   74 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er   74 (455)
                      +|.|||+|-.|.++|..|++.|++|++++|
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            599999999999999999999999999998

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=92.61  E-value=0.11  Score=48.92  Aligned_cols=33  Identities=24%  Similarity=0.308  Sum_probs=30.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      .+|+|||+|-.|..+|..|+..|+ +|.++|.+.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            479999999999999999999997 999999874

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=92.56  E-value=0.08  Score=52.44  Aligned_cols=32  Identities=25%  Similarity=0.273  Sum_probs=30.3

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +|.|||+|-.|+.+|..|++.|++|+++|+++
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            59999999999999999999999999999874

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=92.48  E-value=0.13  Score=51.65  Aligned_cols=34  Identities=12%  Similarity=0.307  Sum_probs=31.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .+|.|||.|..|..+|..|+++|++|.+++|++.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~   36 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   36 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4799999999999999999999999999998753

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=92.45  E-value=0.057  Score=51.72  Aligned_cols=34  Identities=18%  Similarity=0.229  Sum_probs=31.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCC-------CCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLG-------IKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g-------~~V~l~Er~~~   77 (455)
                      .+|.|||+|-.|.++|..|++.|       ++|++++|++.
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            47999999999999999999999       89999998765

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=92.45  E-value=0.1  Score=49.39  Aligned_cols=34  Identities=18%  Similarity=0.220  Sum_probs=30.9

Q ss_pred             cCEEEECCCHHHHH-HHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLV-LSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~-~A~~La~~g~~V~l~Er~~~   77 (455)
                      .+|.|||.|.+|.+ +|..|.++|++|+++|++..
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            46999999999996 89999999999999998764

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=92.34  E-value=0.14  Score=46.31  Aligned_cols=33  Identities=15%  Similarity=0.236  Sum_probs=30.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC----CEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGI----KCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~----~V~l~Er~~   76 (455)
                      .+|.|||+|-.|.++|..|.+.|+    +|.+++|++
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT   39 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence            469999999999999999999998    999999864

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=92.34  E-value=0.12  Score=54.67  Aligned_cols=34  Identities=24%  Similarity=0.257  Sum_probs=31.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .+|.|||+|..|..+|..|+++|++|+++|+++.
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~  346 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEK  346 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHH
Confidence            3699999999999999999999999999998753

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=92.27  E-value=0.081  Score=52.87  Aligned_cols=34  Identities=24%  Similarity=0.422  Sum_probs=31.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~   77 (455)
                      .+|.|||.|-.|+.+|..|++.  |++|+++|+++.
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~   41 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNES   41 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence            4799999999999999999999  899999998753

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=92.27  E-value=0.13  Score=47.87  Aligned_cols=33  Identities=24%  Similarity=0.313  Sum_probs=30.7

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +|.|||+|-.|..+|..|++.|++|++++|++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~   34 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPD   34 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            599999999999999999999999999998753

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=92.26  E-value=0.1  Score=50.19  Aligned_cols=33  Identities=27%  Similarity=0.439  Sum_probs=30.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ..|+|+|+|.+|+.++..|+..|.+|+++++++
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            679999999999999999999999999999864

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=92.20  E-value=0.12  Score=45.41  Aligned_cols=32  Identities=28%  Similarity=0.450  Sum_probs=29.8

Q ss_pred             CEEEEC-CCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           45 PVLIVG-AGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        45 dVvIVG-gG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +|+||| +|-.|..+|..|++.|++|.+++|++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            589999 99999999999999999999999864

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=92.18  E-value=0.16  Score=46.84  Aligned_cols=35  Identities=31%  Similarity=0.434  Sum_probs=31.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..|+|.|+|..|..++..|.+.|++|+++.|+...
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~   38 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQP   38 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            46999999999999999999999999999997643

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=92.16  E-value=0.12  Score=47.52  Aligned_cols=32  Identities=22%  Similarity=0.265  Sum_probs=29.8

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +|.|||+|..|.++|..|++.|++|.++++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            59999999999999999999999999999763

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=92.10  E-value=0.11  Score=50.35  Aligned_cols=33  Identities=12%  Similarity=0.191  Sum_probs=31.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC-------CCEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLG-------IKCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g-------~~V~l~Er~~~   77 (455)
                      +|.|||+|-.|.++|..|++.|       ++|++++|++.
T Consensus        23 kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           23 KISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            6999999999999999999999       99999998765

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=92.04  E-value=0.06  Score=48.26  Aligned_cols=35  Identities=17%  Similarity=0.063  Sum_probs=30.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .+..|+|+|+|..|..+|..|.+.|+ |+++|+++.
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~   42 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV-FVLAEDENV   42 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence            34579999999999999999999999 999998753

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=91.99  E-value=0.16  Score=47.96  Aligned_cols=35  Identities=14%  Similarity=0.294  Sum_probs=31.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~   76 (455)
                      ...+|.|||+|..|..+|..|+..|+  +|.++|.+.
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~   56 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVME   56 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCH
Confidence            34689999999999999999999998  899999853

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=91.90  E-value=0.11  Score=50.08  Aligned_cols=36  Identities=28%  Similarity=0.434  Sum_probs=32.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      ..+.+|+|+|||.+|..+|..|...|. +|+++|++-
T Consensus       186 l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          186 LDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            346789999999999999999999999 899999874

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=91.88  E-value=0.11  Score=49.00  Aligned_cols=32  Identities=28%  Similarity=0.420  Sum_probs=29.8

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~   76 (455)
                      +|+|||+|-.|.++|..|++.|+  +|.++|++.
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            59999999999999999999999  999999864

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=91.87  E-value=0.11  Score=48.54  Aligned_cols=34  Identities=21%  Similarity=0.522  Sum_probs=30.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~~   77 (455)
                      .+|.|||+|-.|..+|+.|+..|+  +|.|+|.+..
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~   50 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSEG   50 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC--
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence            579999999999999999999998  8999998753

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=91.87  E-value=0.12  Score=47.16  Aligned_cols=32  Identities=19%  Similarity=0.312  Sum_probs=29.8

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g-~~V~l~Er~~   76 (455)
                      +|.|||+|-.|..+|..|++.| ++|.+++|++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            5999999999999999999999 9999999864

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=91.83  E-value=0.19  Score=48.64  Aligned_cols=36  Identities=25%  Similarity=0.426  Sum_probs=32.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ....|+|||+|..|..+|..+.+.|++|.++|..+.
T Consensus        11 ~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~   46 (377)
T 3orq_A           11 FGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED   46 (377)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            456799999999999999999999999999997654

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=91.79  E-value=0.15  Score=47.19  Aligned_cols=31  Identities=19%  Similarity=0.319  Sum_probs=29.2

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +|.|||+|..|...|..|++ |++|++++|++
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~   33 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF   33 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            69999999999999999999 99999999864

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=91.74  E-value=0.17  Score=47.91  Aligned_cols=38  Identities=18%  Similarity=0.239  Sum_probs=31.6

Q ss_pred             CcccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGg-G~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      .....|+|.|| |-.|..++..|.+.|++|.++.|....
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~   55 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG   55 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC
Confidence            34568999999 999999999999999999999998643

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=91.73  E-value=0.17  Score=46.37  Aligned_cols=35  Identities=34%  Similarity=0.470  Sum_probs=32.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|+|+|+|-+|.++|..|++.|.+|+|+.|+..
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~  152 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSR  152 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            45799999999999999999999988999999864

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=91.73  E-value=0.17  Score=50.67  Aligned_cols=32  Identities=28%  Similarity=0.485  Sum_probs=30.4

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +|.|||+|..|..+|..|+++|++|++++|++
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~   34 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            69999999999999999999999999999864

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=91.65  E-value=0.14  Score=48.23  Aligned_cols=35  Identities=23%  Similarity=0.425  Sum_probs=31.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKN   75 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~   75 (455)
                      .++.+|+|||+|-.|.++|+.|+..+.  ++.|+|.+
T Consensus         3 ~~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~   39 (318)
T 1ez4_A            3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (318)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            456789999999999999999999886  79999975

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=91.57  E-value=0.12  Score=50.42  Aligned_cols=31  Identities=26%  Similarity=0.478  Sum_probs=29.2

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +|.|||.|-.|+.+|..|++ |++|+++|+++
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            59999999999999999999 99999999874

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=91.53  E-value=0.13  Score=47.30  Aligned_cols=33  Identities=27%  Similarity=0.234  Sum_probs=30.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      .+|+|.|+|..|..++..|.++|++|+++.|++
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            469999999999999999999999999999864

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=91.53  E-value=0.21  Score=47.56  Aligned_cols=34  Identities=24%  Similarity=0.304  Sum_probs=31.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .+|.|||.|..|.++|..|++.|++|.+++++..
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~   50 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGS   50 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTC
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEEECChH
Confidence            4799999999999999999999999999998753

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=91.52  E-value=0.15  Score=45.56  Aligned_cols=36  Identities=31%  Similarity=0.344  Sum_probs=31.8

Q ss_pred             cccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           42 AVVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        42 ~~~dVvIVGg-G~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +...|+|.|| |-.|..++..|.+.|++|.++.|+..
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   56 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEE   56 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChH
Confidence            3457999998 99999999999999999999998753

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=91.51  E-value=0.24  Score=49.65  Aligned_cols=101  Identities=22%  Similarity=0.431  Sum_probs=78.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEe
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~  121 (455)
                      ...+|+|||+|+.|+-+|..|++.|.+|+++++.+....                   .+.                   
T Consensus       190 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-------------------~~~-------------------  231 (484)
T 3o0h_A          190 LPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILR-------------------NFD-------------------  231 (484)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-------------------TSC-------------------
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcccc-------------------ccC-------------------
Confidence            356899999999999999999999999999998764310                   000                   


Q ss_pred             ecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEee
Q 012845          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (455)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~  201 (455)
                                                       ..+.+.|.+.+++.|+                   +++.+++|++++
T Consensus       232 ---------------------------------~~~~~~l~~~l~~~Gv-------------------~i~~~~~V~~i~  259 (484)
T 3o0h_A          232 ---------------------------------YDLRQLLNDAMVAKGI-------------------SIIYEATVSQVQ  259 (484)
T ss_dssp             ---------------------------------HHHHHHHHHHHHHHTC-------------------EEESSCCEEEEE
T ss_pred             ---------------------------------HHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEE
Confidence                                             1344456667777786                   999999999999


Q ss_pred             ecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       202 ~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      .+++.+.+.+.   +|+    ++.+|.||.|.|..+..
T Consensus       260 ~~~~~v~v~~~---~g~----~i~aD~Vi~A~G~~p~~  290 (484)
T 3o0h_A          260 STENCYNVVLT---NGQ----TICADRVMLATGRVPNT  290 (484)
T ss_dssp             ECSSSEEEEET---TSC----EEEESEEEECCCEEECC
T ss_pred             eeCCEEEEEEC---CCc----EEEcCEEEEeeCCCcCC
Confidence            88777767665   664    78999999999976543

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=91.51  E-value=0.17  Score=46.52  Aligned_cols=34  Identities=18%  Similarity=0.304  Sum_probs=31.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ...|+|+|+|-+|.++|..|++.|.+|+|++|+.
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            3579999999999999999999999999999864

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=91.47  E-value=0.13  Score=49.45  Aligned_cols=35  Identities=23%  Similarity=0.458  Sum_probs=32.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKN   75 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~   75 (455)
                      ....+|+|+|+|-+|..+|..|...|. +|+++||+
T Consensus       190 l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          190 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            356799999999999999999999998 69999987

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=91.47  E-value=0.16  Score=46.80  Aligned_cols=32  Identities=34%  Similarity=0.395  Sum_probs=29.5

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~   76 (455)
                      +|.|||+|..|.++|..|++.|+  +|.++++++
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            59999999999999999999998  899999763

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=91.42  E-value=0.14  Score=47.74  Aligned_cols=32  Identities=19%  Similarity=0.134  Sum_probs=29.8

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~   76 (455)
                      +|.|||+|-.|.++|..|++.|+  +|.++|+++
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            69999999999999999999998  899999864

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=91.40  E-value=0.14  Score=53.93  Aligned_cols=34  Identities=18%  Similarity=0.198  Sum_probs=31.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .+|.|||+|..|..+|..|+++|++|+++|+++.
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~  348 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH  348 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CEEEEECCChhhHHHHHHHHhCCCEEEEEECCHH
Confidence            4699999999999999999999999999998753

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=91.32  E-value=0.15  Score=49.18  Aligned_cols=34  Identities=26%  Similarity=0.502  Sum_probs=31.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ...|+|+|+|..|+.+|..|+..|.+|+++|+++
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4679999999999999999999999999999764

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=91.18  E-value=0.19  Score=46.94  Aligned_cols=34  Identities=15%  Similarity=0.188  Sum_probs=31.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      ...|+|+|+|-+|.++|..|++.|. +|+|+.|+.
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            3579999999999999999999998 899999874

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=91.18  E-value=0.16  Score=47.97  Aligned_cols=34  Identities=21%  Similarity=0.390  Sum_probs=30.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKN   75 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~   75 (455)
                      ...+|+|||+|-.|.++|..|+..|+  ++.++|.+
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~   40 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD   40 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            34689999999999999999999885  79999975

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=91.17  E-value=0.18  Score=46.47  Aligned_cols=36  Identities=22%  Similarity=0.184  Sum_probs=32.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~~   78 (455)
                      ...|+|+|+|-+|.++|..|++.|. +|+|+.|+...
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~  153 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKIVRPTLTVANRTMSR  153 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGG
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHH
Confidence            4689999999999999999999999 89999998643

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=91.11  E-value=0.17  Score=47.71  Aligned_cols=34  Identities=29%  Similarity=0.490  Sum_probs=30.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~   76 (455)
                      ..+|+|||+|..|.++|+.|+..|.  +|.++|.+.
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~   41 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence            4589999999999999999998886  799999863

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=91.09  E-value=0.12  Score=50.43  Aligned_cols=30  Identities=30%  Similarity=0.330  Sum_probs=28.0

Q ss_pred             CEEEECCCHHHHHHHHHHHh-CCCCEEEEcC
Q 012845           45 PVLIVGAGPVGLVLSILLTK-LGIKCSVLEK   74 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~-~g~~V~l~Er   74 (455)
                      +|+|||+|-.|.++|..|++ .|++|+++++
T Consensus         4 kI~ViGaG~~G~~~a~~La~~~G~~V~~~~~   34 (404)
T 3c7a_A            4 KVCVCGGGNGAHTLSGLAASRDGVEVRVLTL   34 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTEEEEEECC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEEeC
Confidence            69999999999999999998 5999999994

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=91.05  E-value=0.15  Score=47.82  Aligned_cols=32  Identities=25%  Similarity=0.365  Sum_probs=29.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g--~~V~l~Er~~   76 (455)
                      +|+|||+|-.|.++|..|++.|  .+|.++|++.
T Consensus         3 kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            6999999999999999999999  6899999864

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=91.02  E-value=0.17  Score=47.52  Aligned_cols=33  Identities=18%  Similarity=0.431  Sum_probs=30.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~~   77 (455)
                      +|+|||+|..|.++|..|++.|+  ++.++|.+..
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~   36 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDG   36 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTT
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchH
Confidence            59999999999999999999987  8999998753

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=91.00  E-value=0.17  Score=47.83  Aligned_cols=34  Identities=24%  Similarity=0.392  Sum_probs=30.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKN   75 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~   75 (455)
                      ...+|+|||+|..|.++|..|+..|+  ++.|+|.+
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~   43 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            44689999999999999999999987  79999985

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=90.93  E-value=0.18  Score=50.92  Aligned_cols=36  Identities=19%  Similarity=0.385  Sum_probs=30.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC--------------CCCEEEEcCCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKL--------------GIKCSVLEKNKAFS   79 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~--------------g~~V~l~Er~~~~~   79 (455)
                      ..++|||||+.|+=+|..|++.              +.+|+|+|..+...
T Consensus       218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il  267 (502)
T 4g6h_A          218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVL  267 (502)
T ss_dssp             TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSS
T ss_pred             cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccc
Confidence            3699999999999999988753              36899999988753

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=90.91  E-value=0.18  Score=48.89  Aligned_cols=34  Identities=26%  Similarity=0.468  Sum_probs=31.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ...|+|+|+|..|+.+|..|+..|.+|+++|+++
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            4679999999999999999999999999999864

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=90.85  E-value=0.2  Score=48.11  Aligned_cols=34  Identities=26%  Similarity=0.408  Sum_probs=31.2

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      .|+|+|||..|..+|+.+++.|++|.++|.++..
T Consensus         3 ~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~~   36 (363)
T 4ffl_A            3 TICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQA   36 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence            5999999999999999999999999999987653

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=90.78  E-value=0.19  Score=46.35  Aligned_cols=34  Identities=26%  Similarity=0.377  Sum_probs=31.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ..+|+|||+|-+|.++|..|.+.|.+|++++|+.
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            3579999999999999999999999999999874

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=90.77  E-value=0.2  Score=47.44  Aligned_cols=35  Identities=29%  Similarity=0.498  Sum_probs=31.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      ...+|+|||+|-.|+.+|..|++.|+ +++|+|.+.
T Consensus        33 ~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           33 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             hCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            35789999999999999999999998 599999875

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=90.63  E-value=0.19  Score=49.07  Aligned_cols=36  Identities=25%  Similarity=0.336  Sum_probs=32.3

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      |+....|+|+|||..|..++.++.+.|++|.+++ .+
T Consensus        21 mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~   56 (403)
T 3k5i_A           21 MWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-AD   56 (403)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-ST
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CC
Confidence            4456789999999999999999999999999999 54

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=90.61  E-value=0.25  Score=46.02  Aligned_cols=35  Identities=29%  Similarity=0.379  Sum_probs=32.2

Q ss_pred             ccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGg-G~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ...|+|.|| |..|..++..|.+.|++|+++.|...
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            457999999 99999999999999999999999765

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=90.60  E-value=0.2  Score=46.52  Aligned_cols=35  Identities=40%  Similarity=0.572  Sum_probs=31.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      ...+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            46799999999999999999999998 699999764

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=90.57  E-value=0.25  Score=46.85  Aligned_cols=34  Identities=24%  Similarity=0.233  Sum_probs=31.2

Q ss_pred             ccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGg-G~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +..|+|.|| |-.|..++..|.+.|++|.++.|.+
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   44 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPG   44 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            457999999 9999999999999999999999976

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=90.53  E-value=0.16  Score=50.94  Aligned_cols=34  Identities=32%  Similarity=0.412  Sum_probs=30.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~   77 (455)
                      .+|.|||.|-.|+.+|..|++.  |++|+++|+++.
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~   45 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTA   45 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence            3699999999999999999998  799999998753

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=90.53  E-value=0.28  Score=48.13  Aligned_cols=36  Identities=22%  Similarity=0.404  Sum_probs=32.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ...+|+|+|+|..|..++.++.+.|++|.++|..+.
T Consensus        34 ~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~   69 (419)
T 4e4t_A           34 PGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPA   69 (419)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            456899999999999999999999999999986543

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=90.38  E-value=0.23  Score=42.83  Aligned_cols=34  Identities=26%  Similarity=0.425  Sum_probs=31.2

Q ss_pred             cCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGg-G~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..|+|.|| |-.|..++..|.+.|++|.++.|++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~   38 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChh
Confidence            46999999 99999999999999999999999764

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=90.38  E-value=0.22  Score=45.26  Aligned_cols=32  Identities=13%  Similarity=0.106  Sum_probs=30.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +|.|||+|-.|...|..|.+.|++|.+++|++
T Consensus         5 ~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~   36 (259)
T 2ahr_A            5 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL   36 (259)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence            69999999999999999999999999999864

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=90.35  E-value=0.2  Score=49.80  Aligned_cols=35  Identities=29%  Similarity=0.236  Sum_probs=31.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ....|+|||||.+|...|..|.+.|.+|+|++...
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~   45 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence            34679999999999999999999999999999753

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=90.20  E-value=0.2  Score=44.26  Aligned_cols=35  Identities=20%  Similarity=0.297  Sum_probs=31.6

Q ss_pred             cCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           44 VPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        44 ~dVvIVGg-G~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      .+|+|.|| |..|..++..|.+.|++|.++.|++..
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   40 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEK   40 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGG
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCccc
Confidence            46999996 999999999999999999999998653

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=90.20  E-value=0.21  Score=45.54  Aligned_cols=30  Identities=23%  Similarity=0.267  Sum_probs=28.3

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEK   74 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er   74 (455)
                      +|.|||+|-.|..+|..|++.|++|+++++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            599999999999999999999999999876

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=90.18  E-value=0.31  Score=44.29  Aligned_cols=33  Identities=27%  Similarity=0.505  Sum_probs=30.8

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~   77 (455)
                      .|+|||+|-+|.+++..|.+.|. +|+|+.|+..
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~  143 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIE  143 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHH
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence            89999999999999999999998 8999999753

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=90.15  E-value=0.32  Score=44.36  Aligned_cols=32  Identities=28%  Similarity=0.576  Sum_probs=30.3

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +|+|||+|-+|.++|..|.+.|.+|++++|+.
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            79999999999999999999999999999874

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=90.09  E-value=0.32  Score=47.15  Aligned_cols=36  Identities=25%  Similarity=0.491  Sum_probs=32.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ....|+|+|+|..|..+|.++.+.|++|.+++..+.
T Consensus        13 ~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~   48 (389)
T 3q2o_A           13 PGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKN   48 (389)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence            345899999999999999999999999999997654

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=90.07  E-value=0.28  Score=46.46  Aligned_cols=34  Identities=18%  Similarity=0.352  Sum_probs=30.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKN   75 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~   75 (455)
                      ...+|+|||+|-.|.++|+.|+..|+  ++.|+|.+
T Consensus        18 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~   53 (331)
T 4aj2_A           18 PQNKITVVGVGAVGMACAISILMKDLADELALVDVI   53 (331)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence            45689999999999999999999997  79999975

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=89.97  E-value=0.27  Score=43.00  Aligned_cols=32  Identities=22%  Similarity=0.308  Sum_probs=29.7

Q ss_pred             CEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           45 PVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGg-G~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +|+|.|| |-.|..++..|.++|++|+++.|++
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            4999996 9999999999999999999999874

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=89.92  E-value=0.23  Score=52.33  Aligned_cols=35  Identities=26%  Similarity=0.486  Sum_probs=32.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      -.+|.|||+|..|...|..++.+|++|+++|.++.
T Consensus       316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~  350 (742)
T 3zwc_A          316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPK  350 (742)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCCCchhcccchHh
Confidence            46899999999999999999999999999998754

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=89.92  E-value=0.19  Score=46.20  Aligned_cols=34  Identities=21%  Similarity=0.163  Sum_probs=31.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ...|+|+|+|-+|.++|..|++.|.+|+|+.|+.
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3579999999999999999999999999999874

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=89.88  E-value=15  Score=36.39  Aligned_cols=34  Identities=21%  Similarity=0.279  Sum_probs=28.9

Q ss_pred             CcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHc
Q 012845          359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK  398 (455)
Q Consensus       359 ~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~  398 (455)
                      +++.++||+.+      |.|++-|+.+|...|+.|.+.+.
T Consensus       461 ~~l~~aG~~~~------g~~v~gai~sG~~aA~~il~~l~  494 (504)
T 1sez_A          461 PGLFYAGNHRG------GLSVGKALSSGCNAADLVISYLE  494 (504)
T ss_dssp             TTEEECCSSSS------CSSHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeecCC------CCCHHHHHHHHHHHHHHHHHHHh
Confidence            78999999864      56899999999999998877653

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=89.87  E-value=0.27  Score=45.88  Aligned_cols=35  Identities=20%  Similarity=0.364  Sum_probs=31.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ....|+|||+|..|..+|..|...|.+|+++++..
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34679999999999999999999999999999874

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=89.82  E-value=0.31  Score=45.96  Aligned_cols=37  Identities=16%  Similarity=0.232  Sum_probs=32.3

Q ss_pred             cccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGg-G~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      +...|+|.|| |-.|..++..|++.|++|.+++|....
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~   41 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNS   41 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSS
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcc
Confidence            4457999995 999999999999999999999987643

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=89.72  E-value=0.29  Score=48.19  Aligned_cols=33  Identities=24%  Similarity=0.391  Sum_probs=31.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      .+|.|||.|-.||.+|..|++.|++|+.+|-++
T Consensus        22 ~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A           22 ASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            579999999999999999999999999999874

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=89.72  E-value=0.28  Score=45.57  Aligned_cols=35  Identities=26%  Similarity=0.396  Sum_probs=31.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ....|+|||.|..|..+|..|...|.+|+++++..
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            34679999999999999999999999999999874

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=89.69  E-value=0.32  Score=45.60  Aligned_cols=32  Identities=25%  Similarity=0.507  Sum_probs=29.3

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      +|.|||+|-.|..+|..|+..|+ +|.|+|.+.
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~   33 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTP   33 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSST
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCCh
Confidence            58999999999999999999898 699999874

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=89.65  E-value=0.25  Score=51.90  Aligned_cols=36  Identities=19%  Similarity=0.213  Sum_probs=32.6

Q ss_pred             ccCEEEEC--CCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           43 VVPVLIVG--AGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVG--gG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..+|+|||  +|..|+-+|..|++.|.+|+++++.+..
T Consensus       523 g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l  560 (690)
T 3k30_A          523 GKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQV  560 (690)
T ss_dssp             SSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccccc
Confidence            34699999  9999999999999999999999988764

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=89.16  E-value=0.065  Score=46.98  Aligned_cols=35  Identities=23%  Similarity=0.281  Sum_probs=31.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..+|.|||+|-.|.++|..|.+.|++|++++|+..
T Consensus        19 ~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~   53 (201)
T 2yjz_A           19 QGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ   53 (201)
Confidence            34699999999999999999999999999998754

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=89.58  E-value=0.33  Score=45.39  Aligned_cols=34  Identities=26%  Similarity=0.339  Sum_probs=30.9

Q ss_pred             cCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGg-G~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..|+|+|| |-.|..++..|.+.|++|.++.|++.
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~   46 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS   46 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCC
Confidence            46999997 99999999999999999999998764

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=89.54  E-value=0.25  Score=45.73  Aligned_cols=33  Identities=18%  Similarity=0.290  Sum_probs=29.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~   76 (455)
                      .+|.|||+|-.|.++|..|++.  |.+|.++++++
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   41 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSD   41 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSH
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence            4699999999999999999988  67899999763

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=89.50  E-value=0.32  Score=45.78  Aligned_cols=35  Identities=23%  Similarity=0.260  Sum_probs=31.3

Q ss_pred             ccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGg-G~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ...|+|.|| |-.|..++..|++.|++|+++.|...
T Consensus        20 ~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~   55 (330)
T 2pzm_A           20 HMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFAT   55 (330)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCc
Confidence            457999998 99999999999999999999998643

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=89.50  E-value=0.27  Score=45.16  Aligned_cols=58  Identities=16%  Similarity=0.163  Sum_probs=31.7

Q ss_pred             ccccCCCCCcccccccCCCcccccCCcccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           16 IKTFPYPYGYTQCRALSDSKTIVSNEAVVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGg-G~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +.|.|.+.+....++..+..    ......|+|.|| |-.|..+|..|+++|.+|.+++|+..
T Consensus         9 ~~~~~~~~~g~~~m~~~~~~----~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~   67 (276)
T 3r1i_A            9 MGTLEAQTQGPGSMSVLDLF----DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSD   67 (276)
T ss_dssp             --------------CGGGGG----CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             ccceeccccCCCCccccccc----CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            45666666554333322211    123456888886 67799999999999999999998643

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=89.50  E-value=0.36  Score=45.88  Aligned_cols=33  Identities=18%  Similarity=0.260  Sum_probs=29.6

Q ss_pred             ccCEEEECC-CHHHHHHHHHHHhCCC--CEEEEcCC
Q 012845           43 VVPVLIVGA-GPVGLVLSILLTKLGI--KCSVLEKN   75 (455)
Q Consensus        43 ~~dVvIVGg-G~aGl~~A~~La~~g~--~V~l~Er~   75 (455)
                      ..+|+|||+ |-.|.++|..|+..|.  +|.++|.+
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~   43 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF   43 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            457999998 9999999999999985  79999975

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=89.45  E-value=0.33  Score=48.24  Aligned_cols=35  Identities=26%  Similarity=0.283  Sum_probs=31.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ....|+|+|+|..|..+|..|+..|.+|.++|+++
T Consensus       264 ~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          264 AGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            35679999999999999999999999999999864

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=89.44  E-value=0.32  Score=44.21  Aligned_cols=35  Identities=17%  Similarity=0.153  Sum_probs=30.6

Q ss_pred             cccCEEEECC-C-HHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           42 AVVPVLIVGA-G-PVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGg-G-~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ....|+|.|| | -.|..+|..|+++|++|.+++|+.
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~   57 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHE   57 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCH
Confidence            3567999999 7 499999999999999999999874

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=89.38  E-value=0.35  Score=49.48  Aligned_cols=35  Identities=14%  Similarity=0.392  Sum_probs=33.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..|+|||+|..|..+|..|.+.|++|+++|+++..
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~  383 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESP  383 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHH
Confidence            68999999999999999999999999999999765

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=89.35  E-value=0.34  Score=44.84  Aligned_cols=34  Identities=26%  Similarity=0.439  Sum_probs=31.0

Q ss_pred             CEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           45 PVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        45 dVvIVGg-G~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      +|+|.|| |..|..++..|.++|++|+++-|++..
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~   36 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGP   36 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            5999999 999999999999999999999987543

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=89.28  E-value=0.31  Score=44.23  Aligned_cols=34  Identities=24%  Similarity=0.441  Sum_probs=31.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            5689999999999999999999998 689999764

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=89.08  E-value=0.21  Score=46.24  Aligned_cols=32  Identities=22%  Similarity=0.295  Sum_probs=29.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +|.|||+|-.|..+|..|++.|++|++++ ++.
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~   36 (295)
T 1yb4_A            5 KLGFIGLGIMGSPMAINLARAGHQLHVTT-IGP   36 (295)
T ss_dssp             EEEECCCSTTHHHHHHHHHHTTCEEEECC-SSC
T ss_pred             EEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHH
Confidence            69999999999999999999999999999 644

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=89.04  E-value=0.34  Score=42.55  Aligned_cols=32  Identities=16%  Similarity=0.321  Sum_probs=29.8

Q ss_pred             CEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           45 PVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGg-G~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +|+|.|| |-.|..++..|.+.|++|.++.|+.
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            4999998 9999999999999999999999874

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=88.95  E-value=0.17  Score=49.04  Aligned_cols=39  Identities=13%  Similarity=0.190  Sum_probs=32.3

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCC--------CEEEEcCCCCC
Q 012845           40 NEAVVPVLIVGAGPVGLVLSILLTKLGI--------KCSVLEKNKAF   78 (455)
Q Consensus        40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~--------~V~l~Er~~~~   78 (455)
                      ..++.+|.|||+|-=|.++|..|+++|.        +|+++-|++..
T Consensus        31 ~~~p~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~   77 (391)
T 4fgw_A           31 AEKPFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEI   77 (391)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBS
T ss_pred             cCCCCeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHh
Confidence            3567799999999999999999999864        49999887654

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=88.92  E-value=0.26  Score=46.63  Aligned_cols=34  Identities=26%  Similarity=0.350  Sum_probs=29.9

Q ss_pred             ccCEEEECC-CHHHHHHHHHHHhCCC-------CEEEEcCCC
Q 012845           43 VVPVLIVGA-GPVGLVLSILLTKLGI-------KCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGg-G~aGl~~A~~La~~g~-------~V~l~Er~~   76 (455)
                      ..+|+|+|| |-.|..++..|.+.|+       +|.++|+..
T Consensus         4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~   45 (327)
T 1y7t_A            4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQ   45 (327)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCC
Confidence            357999998 9999999999999986       899999753

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=88.87  E-value=0.38  Score=44.43  Aligned_cols=34  Identities=32%  Similarity=0.462  Sum_probs=30.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      ...|+|+|+|-+|.++|..|++.|. +|+|+.|+.
T Consensus       127 ~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~  161 (283)
T 3jyo_A          127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            4579999999999999999999999 599999874

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=88.79  E-value=0.27  Score=46.52  Aligned_cols=33  Identities=21%  Similarity=0.262  Sum_probs=29.7

Q ss_pred             ccCEEEECC-CHHHHHHHHHHHhCCC-------CEEEEcCC
Q 012845           43 VVPVLIVGA-GPVGLVLSILLTKLGI-------KCSVLEKN   75 (455)
Q Consensus        43 ~~dVvIVGg-G~aGl~~A~~La~~g~-------~V~l~Er~   75 (455)
                      +.+|+|+|| |-.|..++..|+..|+       +|.++|..
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~   45 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIP   45 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCS
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCC
Confidence            468999998 9999999999999886       79999976

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=88.53  E-value=0.39  Score=45.12  Aligned_cols=34  Identities=21%  Similarity=0.322  Sum_probs=31.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      ...|+|+|+|-+|.++|..|++.|. +|+|+.|+.
T Consensus       154 gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~  188 (315)
T 3tnl_A          154 GKKMTICGAGGAATAICIQAALDGVKEISIFNRKD  188 (315)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCC
Confidence            4579999999999999999999999 799999874

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=88.52  E-value=0.45  Score=45.27  Aligned_cols=35  Identities=20%  Similarity=0.286  Sum_probs=30.5

Q ss_pred             ccCEEEECC-CHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 012845           43 VVPVLIVGA-GPVGLVLSILLTKLG-IKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGg-G~aGl~~A~~La~~g-~~V~l~Er~~~   77 (455)
                      ...|+|.|| |..|..++..|.+.| ++|.++.|...
T Consensus        46 ~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   82 (357)
T 2x6t_A           46 GRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKD   82 (357)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence            357999998 999999999999999 99999998754

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=88.48  E-value=0.31  Score=47.89  Aligned_cols=35  Identities=29%  Similarity=0.447  Sum_probs=31.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      -.+.-|||.|-.|+.+|..|+++|++|+++|+++.
T Consensus        11 ~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~   45 (431)
T 3ojo_A           11 GSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQ   45 (431)
T ss_dssp             -CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            35789999999999999999999999999999854

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=88.48  E-value=0.35  Score=45.33  Aligned_cols=34  Identities=21%  Similarity=0.238  Sum_probs=30.8

Q ss_pred             cccCEEEECCC-HHHHHHHHHHHhCCCCEEEEcCC
Q 012845           42 AVVPVLIVGAG-PVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        42 ~~~dVvIVGgG-~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      ...+|+|||+| +.|..+|..|...|.+|++.+|+
T Consensus       176 ~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          176 YGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence            45789999999 67999999999999999999876

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=88.47  E-value=0.32  Score=47.43  Aligned_cols=35  Identities=26%  Similarity=0.266  Sum_probs=31.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ....|+|||.|..|..+|..|...|.+|+++|+++
T Consensus       219 ~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          219 GGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            34689999999999999999999999999999864

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=88.45  E-value=0.43  Score=43.80  Aligned_cols=35  Identities=17%  Similarity=0.181  Sum_probs=31.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      ....|+|+|+|-+|.++|..|++.|. +|+|+.|+.
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~  154 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDM  154 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            34679999999999999999999997 899999864

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=88.44  E-value=0.4  Score=44.23  Aligned_cols=34  Identities=18%  Similarity=0.156  Sum_probs=30.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      ...|+|+|+|-+|.++|..|++.|. +|+|+.|+.
T Consensus       126 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  160 (281)
T 3o8q_A          126 GATILLIGAGGAARGVLKPLLDQQPASITVTNRTF  160 (281)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred             CCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCH
Confidence            4679999999999999999999997 899999864

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=88.42  E-value=0.43  Score=43.02  Aligned_cols=36  Identities=11%  Similarity=0.226  Sum_probs=31.2

Q ss_pred             ccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           43 VVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGg-G~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...|+|.|| |-.|..+|..|+++|++|.+++|+...
T Consensus        22 ~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~   58 (251)
T 3orf_A           22 SKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENP   58 (251)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            356899997 578999999999999999999998754

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=88.39  E-value=0.35  Score=44.81  Aligned_cols=33  Identities=18%  Similarity=0.227  Sum_probs=29.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ...|+|+|+|-+|.++|..|++.| +|+|++|+.
T Consensus       128 ~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~  160 (287)
T 1nvt_A          128 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV  160 (287)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CCEEEEECchHHHHHHHHHHHHCC-CEEEEECCH
Confidence            356999999999999999999999 999999863

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=88.39  E-value=0.51  Score=44.33  Aligned_cols=35  Identities=26%  Similarity=0.207  Sum_probs=31.1

Q ss_pred             cccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           42 AVVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGg-G~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ....|+|.|| |-.|..++..|.+.|++|+++.|+.
T Consensus        10 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~   45 (342)
T 1y1p_A           10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSA   45 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3457999998 9999999999999999999998863

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=88.32  E-value=0.45  Score=45.12  Aligned_cols=35  Identities=11%  Similarity=0.255  Sum_probs=31.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ...|.|||.|-.|..+|..|+..|++|.++++...
T Consensus       150 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~  184 (334)
T 2dbq_A          150 GKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRK  184 (334)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcc
Confidence            35699999999999999999999999999998754

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=88.31  E-value=0.3  Score=46.75  Aligned_cols=34  Identities=26%  Similarity=0.572  Sum_probs=31.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus       118 ~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            5789999999999999999999998 599999764

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=88.28  E-value=0.92  Score=45.46  Aligned_cols=42  Identities=17%  Similarity=0.212  Sum_probs=31.3

Q ss_pred             eEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch
Q 012845          190 EILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (455)
Q Consensus       190 ~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~  238 (455)
                      +|+.++.|+++..++....+.+.   +|.    ++.+|+||.|.|....
T Consensus       273 ~v~~~~~v~~i~~~~~v~~v~~~---~g~----~i~aD~Vv~a~G~~p~  314 (493)
T 1y56_A          273 DYVHIPNVKRVEGNEKVERVIDM---NNH----EYKVDALIFADGRRPD  314 (493)
T ss_dssp             EEEECSSEEEEECSSSCCEEEET---TCC----EEECSEEEECCCEEEC
T ss_pred             EEEeCCeeEEEecCCceEEEEeC---CCe----EEEeCEEEECCCcCcC
Confidence            89999999999865443334433   554    7899999999997653

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=88.27  E-value=0.57  Score=44.38  Aligned_cols=36  Identities=22%  Similarity=0.248  Sum_probs=32.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...|.|||.|-.|..+|..|+..|.+|.++++....
T Consensus       164 g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~  199 (333)
T 3ba1_A          164 GKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKP  199 (333)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchh
Confidence            457999999999999999999999999999988654

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=88.22  E-value=0.12  Score=49.12  Aligned_cols=37  Identities=27%  Similarity=0.163  Sum_probs=32.7

Q ss_pred             CcccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           41 EAVVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        41 ~~~~dVvIVGg-G~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ++...|+|.|| |..|..++..|.+.|++|+++.|...
T Consensus        23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   60 (351)
T 3ruf_A           23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFST   60 (351)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            34568999996 99999999999999999999998764

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=88.14  E-value=0.39  Score=45.37  Aligned_cols=34  Identities=24%  Similarity=0.392  Sum_probs=30.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKN   75 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~   75 (455)
                      ++.+|+|||+|-.|.++|+.|+..++  ++.|+|.+
T Consensus         8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~   43 (326)
T 2zqz_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            44789999999999999999998886  79999974

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=88.04  E-value=0.46  Score=47.50  Aligned_cols=35  Identities=31%  Similarity=0.316  Sum_probs=31.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ....|+|||.|..|..+|..|+..|.+|+++|+.+
T Consensus       273 ~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~  307 (494)
T 3ce6_A          273 GGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDP  307 (494)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34679999999999999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	455
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	1e-26
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	6e-13
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	1e-09
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	2e-11
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	1e-10
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	4e-08
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	5e-06
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	6e-06
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	1e-05
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	2e-05
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	2e-05
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	2e-05
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	3e-05
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	3e-05
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	4e-05
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	7e-05
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	1e-04
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	3e-04
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	4e-04
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	4e-04
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	0.001
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	0.001
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	0.001
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	0.001
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	0.001
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	0.002
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	0.002
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	0.002
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	0.002
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	0.003
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	0.004

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score =  108 bits (269), Expect = 1e-26
 Identities = 79/418 (18%), Positives = 126/418 (30%), Gaps = 84/418 (20%)

Query: 39  SNEAVVPVLIVGAGPVGLVLSILL-----TKLGIKCSVLEKNKAFSTHPQAHFINNRYAL 93
            +E+   VLIVGAGP GL+ + +L      K  +K  +++K      + QA  +  R   
Sbjct: 3   YSESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLE 62

Query: 94  VFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFS 153
             + L GLA++I      +      +Y     G I       +  D    +S        
Sbjct: 63  SLKNL-GLADKILSEANDMSTIA--LYNPDENGHI---RRTDRIPDTLPGISRYHQVVLH 116

Query: 154 QYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASF 213
           Q ++ + +L  + +++      E                                     
Sbjct: 117 QGRIERRILDSIAEISDTRIKVERP----------------------------------- 141

Query: 214 LKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNE 273
                     ++ +     D     V   +      E                     ++
Sbjct: 142 -----LIPEKMEIDSSKAEDPEAYPVTMTLRYMSEDES--------------TPLQFGHK 182

Query: 274 RPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWEL 333
               LF             + L EG+                      E +  K V    
Sbjct: 183 TENGLFRSNLQTQEEEDANYRLPEGKE-----------------AGEIETVHCKYVIGCD 225

Query: 334 SDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKI 393
                +          V EKF     ++ +AGDACH   P  G GMNT + D +NL WK+
Sbjct: 226 GGHSWVRRTLGFEM-IVTEKF-SKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKL 283

Query: 394 ASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSEGIA 451
             VL   A   IL TYE ER+P A+       Q  R     P+    D    + +   
Sbjct: 284 GLVLTGRAKRDILKTYEEERQPFAQALIDFDHQFSRLFSGRPAKDVADEMGVSMDVFK 341

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 66.9 bits (162), Expect = 6e-13
 Identities = 35/201 (17%), Positives = 68/201 (33%), Gaps = 37/201 (18%)

Query: 45  PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST--HPQAHFINNRYALVFRKLDGLA 102
            V I+GAGP GL+L  LL K GI   +LE+          +A  +      + R+  G+ 
Sbjct: 4   QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREA-GVD 62

Query: 103 EEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLL 162
             + R     +                      +  D +++    +V  + Q ++ + L+
Sbjct: 63  RRMARDGLVHEGVEIAFAG------------QRRRIDLKRLSGGKTVTVYGQTEVTRDLM 110

Query: 163 KQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTER 222
           +  E                     G   +     V +    Q      +F ++G+    
Sbjct: 111 EAREA-------------------CGATTVYQAAEVRLH-DLQGERPYVTFERDGE--RL 148

Query: 223 NIQCNILIGTDGAGSTVRKLV 243
            + C+ + G DG     R+ +
Sbjct: 149 RLDCDYIAGCDGFHGISRQSI 169

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 56.9 bits (136), Expect = 1e-09
 Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 6/77 (7%)

Query: 356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKP 415
             + ++ LAGDA H  PP G  G+N    D   L   +    ++     +L  Y      
Sbjct: 174 MQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYRE-GRGELLERYSAICLR 232

Query: 416 IAEFNTALSVQNFRAAM 432
                     + F   M
Sbjct: 233 RIW-----KAERFSWWM 244

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 62.1 bits (149), Expect = 2e-11
 Identities = 22/99 (22%), Positives = 33/99 (33%), Gaps = 3/99 (3%)

Query: 338 VIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL 397
           V                     +I L GDA H   P G  G +  + D   LA  +A   
Sbjct: 168 VRAHLHPDQRPLRDPLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALA--- 224

Query: 398 KDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPS 436
           ++   A+ L  YE  R+P A      + +  +      S
Sbjct: 225 RNADVAAALREYEEARRPTANKIILANREREKEEWAAAS 263

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 60.1 bits (144), Expect = 1e-10
 Identities = 29/197 (14%), Positives = 54/197 (27%), Gaps = 31/197 (15%)

Query: 46  VLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEE 104
           +LI GAG  GL  ++ L + GI K ++LE +           I         +L      
Sbjct: 4   ILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPAL 63

Query: 105 IERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQ 164
              +          +     +G  + S               +         L       
Sbjct: 64  AATAI-----PTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAA----- 113

Query: 165 LEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNI 224
                                L  + +  G     +   D  + +     ++G    + +
Sbjct: 114 -----------------VRERLGQQAVRTGLGVERIEERDGRVLIG---ARDGHGKPQAL 153

Query: 225 QCNILIGTDGAGSTVRK 241
             ++L+G DG  S VR 
Sbjct: 154 GADVLVGADGIHSAVRA 170

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 52.0 bits (123), Expect = 4e-08
 Identities = 10/74 (13%), Positives = 23/74 (31%), Gaps = 1/74 (1%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNK-AFSTHPQAHFINNRYALVFRKLDGLAEE 104
           + +VG    GL  +++L   G+   V E++    S       +         +     + 
Sbjct: 7   IAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDS 66

Query: 105 IERSQPPVDLWRKF 118
           I      ++     
Sbjct: 67  ISVPSSSMEYVDAL 80

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 45.4 bits (106), Expect = 5e-06
 Identities = 23/117 (19%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNK------AFSTHPQAHFINNRYALVFRKLD 99
           V+++G GP GL+ +I   + G    +L+K        A S   + +  N        K  
Sbjct: 5   VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHI 64

Query: 100 GLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYK 156
                   S   +      I      G  L   DH +          V  A  ++ K
Sbjct: 65  PGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLK 121

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 45.6 bits (106), Expect = 6e-06
 Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 12/103 (11%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKN------------KAFSTHPQAHFINNRYAL 93
           V ++GAG  GL  +  L   G+  +V E                      A+ +      
Sbjct: 4   VAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGD 63

Query: 94  VFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQ 136
           V   +D L    ++  P     R      +        +D ++
Sbjct: 64  VTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNPIDLIK 106

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 27/196 (13%), Positives = 52/196 (26%), Gaps = 14/196 (7%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKN-----KAFSTHPQ--------AHFINNRYA 92
           V++VG G  G+  + LL   G+   VLE       + ++   Q          ++     
Sbjct: 2   VVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQN 61

Query: 93  LVFRKLDGLAEEIERSQPPVDL-WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAH 151
            + R    L  E  +      L            GP     + +   D       +    
Sbjct: 62  RILRLAKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMG 121

Query: 152 FSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIA 211
                         E+ +         +       +    L  + CV+    +       
Sbjct: 122 REIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFL 181

Query: 212 SFLKEGKCTERNIQCN 227
            ++K+   T R I   
Sbjct: 182 WYVKQCGGTTRIISTT 197

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 47/365 (12%), Positives = 98/365 (26%), Gaps = 35/365 (9%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF----STHPQ--------AHFINNRYAL 93
           V +VG G  GL ++  L   G    +LE +        TH           +   +R   
Sbjct: 3   VAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPA 62

Query: 94  VFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFS 153
                  L  E           R+++Y       +  S       D   + + + VA   
Sbjct: 63  TRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARLRVAGEL 122

Query: 154 QYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASF 213
             +     + +      +         +    +Q        E +SV+AT   +  +   
Sbjct: 123 FSRRAPEGVDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPML--VKME 180

Query: 214 LKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNE 273
            +        I+           +     +   L       +++     +       +  
Sbjct: 181 REHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQVLIDALAASLGDAAHVGA 240

Query: 274 RPGMLFFIFNTEAIGVLVAHDLKEGEF---ILQVPFYPPQQNLEDFSPEICEKLIFKLVG 330
           R   L        + +       E      +L  P +   + L      +          
Sbjct: 241 RVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAA-------- 292

Query: 331 WELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLA 390
             ++ I  +     V      +  L     + L G+A        G G+N  +++A  LA
Sbjct: 293 -LVAGIYNLGHLERV---AAIDAALQRLPGLHLIGNAYK------GVGLNDCIRNAAQLA 342

Query: 391 WKIAS 395
             + +
Sbjct: 343 DALVA 347

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76
           +I+GAG  GL  +  L KLG   +V +  K
Sbjct: 7  NIIIGAGAAGLFCAAQLAKLGKSVTVFDNGK 37

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 43.6 bits (102), Expect = 2e-05
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
          +LIVGAG  G V+   L + G +  ++++ 
Sbjct: 5  ILIVGAGFSGAVIGRQLAEKGHQVHIIDQR 34

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 8/30 (26%), Positives = 18/30 (60%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
          V+++G G    +LS +++  G K   +++N
Sbjct: 9  VIVLGTGLTECILSGIMSVNGKKVLHMDRN 38

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 43.3 bits (101), Expect = 3e-05
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76
           +IVG+G  G V +  L KL  K  V+EK  
Sbjct: 4  YIIVGSGLFGAVCANELKKLNKKVLVIEKRN 34

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 4e-05
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
          V+++G G    +LS LL+  G K   ++K 
Sbjct: 8  VIVLGTGITECILSGLLSVDGKKVLHIDKQ 37

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 42.1 bits (98), Expect = 7e-05
 Identities = 14/35 (40%), Positives = 17/35 (48%)

Query: 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78
          V VL+VGAG  GL     L +LG    V+E     
Sbjct: 8  VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDV 42

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
          V+IVGAG  GL  + +L   G + +VLE +
Sbjct: 33 VVIVGAGMAGLSAAYVLAGAGHQVTVLEAS 62

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 3e-04
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
          V+I+G+G  GL  +  L   G+  ++LE  
Sbjct: 8  VIIIGSGVSGLAAARQLQSFGMDVTLLEAR 37

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 40.3 bits (92), Expect = 4e-04
 Identities = 37/351 (10%), Positives = 82/351 (23%), Gaps = 20/351 (5%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAF----STHPQAHFINNRYALVFRKLDG 100
           V++VGAG  G+  +  L++ GI    +LE              A       A     ++G
Sbjct: 3   VIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNG 62

Query: 101 LAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKL 160
                        L  +               +     D + V   + +A   +    KL
Sbjct: 63  GKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEKL 122

Query: 161 LLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCT 220
                      +          +        +           +       + L+     
Sbjct: 123 SATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTVPL 182

Query: 221 ERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF 280
                    +           +V                    +   + ++ E       
Sbjct: 183 ATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGG 242

Query: 281 IFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID 340
           +        + + D      ++       Q +L  F P+        L  W++  I    
Sbjct: 243 VTVKTEDNSVYSAD----YVMVSASLGVLQSDLIQFKPK--------LPTWKVRAIY--Q 288

Query: 341 IKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFG-MNTGVQDAHNLA 390
             P  ++    ++      ++   G+           G   +G+  A  L 
Sbjct: 289 FWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILI 339

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 39.8 bits (92), Expect = 4e-04
 Identities = 20/120 (16%), Positives = 36/120 (30%), Gaps = 6/120 (5%)

Query: 46  VLIVGAGPVGLVLSILLTKL------GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLD 99
           V+IVGAGP GL  +  L +L       ++  ++EK      H  +    +  A      D
Sbjct: 35  VVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPD 94

Query: 100 GLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNK 159
              +    + P  +     +         +     M       V     V+   +     
Sbjct: 95  WKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEAL 154

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH 81
          V++VG+G  G   +I  T  G K  ++EK      +
Sbjct: 19 VVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGN 54

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAH 85
          V++VGAG +G+     L K G+K  +++      T+   H
Sbjct: 6  VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHH 45

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 15/99 (15%), Positives = 35/99 (35%), Gaps = 3/99 (3%)

Query: 42  AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGL 101
             VP +++G G    V ++ L + G++  +LE  + ++       I        ++    
Sbjct: 1   GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWF 60

Query: 102 AEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDF 140
                R++ P+  +           P  G +D +     
Sbjct: 61  ---KNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQM 96

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH 81
          V+I+G+G  GL  ++     G K  +LEK      +
Sbjct: 26 VVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGN 61

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 6/30 (20%), Positives = 14/30 (46%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
           +++G G +G  ++  L K     ++ E  
Sbjct: 7  AVVIGGGIIGSAIAYYLAKENKNTALFESG 36

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 9/33 (27%), Positives = 18/33 (54%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78
          V+++G GP G   +      G+K +++E+ K  
Sbjct: 9  VVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL 41

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFIN 88
          VLIVG+GP G   +I   + GI+  ++ +             N
Sbjct: 4  VLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIEN 46

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH 81
          VL+VGAG  G   S+   K G    +++K      +
Sbjct: 22 VLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGN 57

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 37.1 bits (85), Expect = 0.002
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78
          V+I+G GP G V +I   +LG K + +EK  A 
Sbjct: 6  VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGAL 38

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 6/31 (19%), Positives = 18/31 (58%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76
          ++++G G  G+  +    +   K +++EK++
Sbjct: 4  LIVIGGGSGGMAAARRAARHNAKVALVEKSR 34

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 36.4 bits (83), Expect = 0.004
 Identities = 8/46 (17%), Positives = 17/46 (36%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRY 91
           + +G G  G+         G KC+++E  +   T      +  + 
Sbjct: 5  YIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKV 50

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	455
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	99.97
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	99.97
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.93
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.9
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.87
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.65
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.58
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.56
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.54
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.42
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.4
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.38
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.34
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.26
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.26
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.26
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.21
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.17
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.15
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.14
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.09
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.08
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.06
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.06
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.03
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.02
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.0
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.99
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.99
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.98
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.98
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.96
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.93
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.92
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.91
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.91
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.89
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.88
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.87
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.86
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.84
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.82
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.82
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.81
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.8
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.8
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.75
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.72
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.66
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.66
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.63
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.61
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.6
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.55
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.54
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.52
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.51
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.51
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.49
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.48
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.47
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.44
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.43
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.43
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.39
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.38
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.37
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.37
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.36
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.36
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.3
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.3
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.27
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.25
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.2
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.18
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.17
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.15
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.13
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.13
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.08
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.01
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.0
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	97.98
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.8
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.71
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.71
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	97.6
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.44
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.31
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.14
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.01
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	96.98
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	96.92
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.87
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	96.82
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.79
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	96.75
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.66
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.66
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.42
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.41
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.22
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.2
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.2
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.2
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.18
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	96.18
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.09
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	95.91
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	95.71
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	95.6
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	95.44
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.43
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	95.26
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.07
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	95.01
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	94.88
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	94.79
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	94.77
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	94.71
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	94.5
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	94.41
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	94.38
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.27
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.16
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	94.1
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	94.09
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	94.04
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.01
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	93.88
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.87
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.85
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	93.73
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	93.72
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	93.7
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	93.69
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	93.57
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	93.55
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	93.48
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	93.23
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	93.06
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	92.92
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	92.59
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	92.54
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	92.44
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	92.44
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	92.36
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	92.35
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	92.25
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	91.98
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	91.86
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	91.69
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	91.65
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	91.64
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	91.61
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	91.4
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	91.28
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.28
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	91.04
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	90.87
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	90.44
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	90.38
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	90.33
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	90.1
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	89.42
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	89.16
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	89.05
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	89.04
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	88.52
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	88.47
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	88.38
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	88.32
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	87.9
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	87.75
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	87.64
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	87.62
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	87.03
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	86.3
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	86.3
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	85.63
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	85.59
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	85.05
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	85.04
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	84.94
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	84.7
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	84.59
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	84.37
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	84.33
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	84.03
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	83.47
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	82.68
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	81.94
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	80.71
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	80.24
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	80.16

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.97  E-value=7.9e-30  Score=239.56  Aligned_cols=260  Identities=22%  Similarity=0.269  Sum_probs=192.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEe
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~  121 (455)
                      ++||+|||||||||++|+.|+++|+ +|+||||.+.+...++++.|.+++++.|+++ ++++.+........    ....
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~-~~~~~~~~~~~~~~----~~~~   75 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAEL-GLGPALAATAIPTH----ELRY   75 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHT-TCHHHHHHHSEEEC----EEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHc-CchhhhHhhhcccc----ccee
Confidence            3699999999999999999999997 8999999999988999999999999999999 99999887654331    1122


Q ss_pred             ecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEee
Q 012845          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (455)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~  201 (455)
                      .+.+|..+..........     .........+......+.+.+.+...                 +..++++++++.+.
T Consensus        76 ~~~~g~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~v~~~~  133 (288)
T d3c96a1          76 IDQSGATVWSEPRGVEAG-----NAYPQYSIHRGELQMILLAAVRERLG-----------------QQAVRTGLGVERIE  133 (288)
T ss_dssp             ECTTSCEEEEEECGGGGT-----CSSCEEEEEHHHHHHHHHHHHHHHHC-----------------TTSEEESEEEEEEE
T ss_pred             EcCCCCEEEecccccccc-----ccCcccccchhhhHHHHHHHHHHhcc-----------------CeeeecCcEEEEee
Confidence            233444443222111111     01112223444444444444433211                 24899999999999


Q ss_pred             ecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEEE
Q 012845          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI  281 (455)
Q Consensus       202 ~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (455)
                      ..++.+.+++.   ++.+..+++.+|+||+|||.+|.+|+.+..........                            
T Consensus       134 ~~~~~v~v~~~---~g~~~~~~~~ad~vi~ADG~~S~vr~~~~~~~~~~~~~----------------------------  182 (288)
T d3c96a1         134 ERDGRVLIGAR---DGHGKPQALGADVLVGADGIHSAVRAHLHPDQRPLRDP----------------------------  182 (288)
T ss_dssp             EETTEEEEEEE---ETTSCEEEEEESEEEECCCTTCHHHHHHCTTCCCCCCC----------------------------
T ss_pred             ecCCcEEEEEE---cCCCCeEEEeeceeeccCCccceeeeeecccccccccc----------------------------
Confidence            99999988888   66666678999999999999999998874221100000                            


Q ss_pred             EccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEeceeeecccccCCCcE
Q 012845          282 FNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQI  361 (455)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  361 (455)
                                                                                           ...+.  .+++
T Consensus       183 ---------------------------------------------------------------------~~~~~--~~~~  191 (288)
T d3c96a1         183 ---------------------------------------------------------------------LPHWG--RGRI  191 (288)
T ss_dssp             ---------------------------------------------------------------------CSCCC--BTTE
T ss_pred             ---------------------------------------------------------------------ccccc--cCcc
Confidence                                                                                 00111  3889


Q ss_pred             EEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHhcc
Q 012845          362 ILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEV  434 (455)
Q Consensus       362 vliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~  434 (455)
                      +++|||+|.++|+.|||++++++|+..|++.|.+   +.+...+|..|++.|+++++.++..++...+..+..
T Consensus       192 ~~~gda~h~~~p~~g~G~~~ai~d~~~l~~~l~~---~~~~~~al~~y~~~r~pr~~~~~~~~~~~~~~~~~~  261 (288)
T d3c96a1         192 TLLGDAAHLMYPMGANGASQAILDGIELAAALAR---NADVAAALREYEEARRPTANKIILANREREKEEWAA  261 (288)
T ss_dssp             EECTHHHHCCCSSTTCTHHHHHHHHHHHHHHHHH---CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecccccceeCCccccchhhhhhhHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            9999999999999999999999999999999975   456678999999999999999999998776655433

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=99.97  E-value=6.8e-30  Score=248.19  Aligned_cols=312  Identities=23%  Similarity=0.265  Sum_probs=183.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHH-----hCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccc
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLT-----KLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLW  115 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La-----~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~  115 (455)
                      ...|||+||||||+||++|..|+     ++|++|+||||++.+...++++.|+++++++|+++ |+++++...+.+....
T Consensus         5 ~~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~~r~~~l~~~~~~~L~~l-Gl~~~i~~~~~~~~~~   83 (360)
T d1pn0a1           5 ESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNL-GLADKILSEANDMSTI   83 (360)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTT-TCHHHHHTTCBCCCEE
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCcCCeEEEECHHHHHHHHHc-CChHHHHhhcCCccee
Confidence            45799999999999999999997     57999999999999999999999999999999999 9999998877665332


Q ss_pred             cceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEecc
Q 012845          116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH  195 (455)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~  195 (455)
                      ...  .....+...........   ...........+.+..+...|.+.+.+...                  .......
T Consensus        84 ~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------~~~~~~~  140 (360)
T d1pn0a1          84 ALY--NPDENGHIRRTDRIPDT---LPGISRYHQVVLHQGRIERRILDSIAEISD------------------TRIKVER  140 (360)
T ss_dssp             EEE--EECTTSCEEEEEEEESS---CTTSCSSCCEECCHHHHHHHHHHHHHHHHT------------------TSSCEEC
T ss_pred             EEE--ecccCCccccccccccc---ccccccchheeecHHHHHHHHHHHHHhccc------------------cceeeeE
Confidence            111  11112221111100000   000112223456788888888888776542                  1111111


Q ss_pred             EEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCC
Q 012845          196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP  275 (455)
Q Consensus       196 ~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (455)
                      .+                  .+    ..+.+|++++|||.+|.+|.............            .... .....
T Consensus       141 ~~------------------~~----~~~~~d~~~~~dg~~s~v~~~~~~~~~~~~~~------------~~~~-~~~~~  185 (360)
T d1pn0a1         141 PL------------------IP----EKMEIDSSKAEDPEAYPVTMTLRYMSEDESTP------------LQFG-HKTEN  185 (360)
T ss_dssp             SE------------------EE----EEEEECGGGTTCTTCCCEEEEEEECCGGGSCC------------CTTC-CCCCS
T ss_pred             ec------------------cc----ceEEeeEEEEeecCCcceEEEEEEeecccccc------------eeee-eecCC
Confidence            10                  11    25679999999999999886542111000000            0000 00000


Q ss_pred             ceEEEEE--ccC-ceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEeceeeec
Q 012845          276 GMLFFIF--NTE-AIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAE  352 (455)
Q Consensus       276 ~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (455)
                      +.+...+  .+. ...+..+.......+.......     .......               .  ......++.......
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~---------------~--~~~~~~~~~~~~~~~  243 (360)
T d1pn0a1         186 GLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKY-----VIGCDGG---------------H--SWVRRTLGFEMIVTE  243 (360)
T ss_dssp             SSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEE-----EEECCCT---------------T--CHHHHHHTCCCEECS
T ss_pred             CceEEeeecCCcccceeecCcccchhhHHHHHHHh-----hcCcccc---------------c--chhhcccccccchhh
Confidence            0000000  000 0000000000000000000000     0000000               0  000000111122233


Q ss_pred             ccccCCCcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHh
Q 012845          353 KFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAM  432 (455)
Q Consensus       353 ~~~~~~~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~  432 (455)
                      .|.. .+||+|||||||.|+|+.|||+|+||+||..|++.|....++.....+|+.|++.|++++..++..++.+.+.+.
T Consensus       244 ~~~~-~grv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~l~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~  322 (360)
T d1pn0a1         244 KFSK-DERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLTGRAKRDILKTYEEERQPFAQALIDFDHQFSRLFS  322 (360)
T ss_dssp             CSEE-TTTEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHHTTCBCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             heee-cCcEEEccCcccccccccCCCCcccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            3332 479999999999999999999999999999999999998877778899999999999999999999998888766


Q ss_pred             cc
Q 012845          433 EV  434 (455)
Q Consensus       433 ~~  434 (455)
                      ..
T Consensus       323 ~~  324 (360)
T d1pn0a1         323 GR  324 (360)
T ss_dssp             SC
T ss_pred             CC
Confidence            44

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=4.5e-26  Score=215.15  Aligned_cols=251  Identities=20%  Similarity=0.279  Sum_probs=185.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC--CCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceE
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF--STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~--~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~  119 (455)
                      |++||+||||||+||++|+.|+++|++|+||||.+.+  ....++..++++++++|+++ |+++.+...+.+...   ..
T Consensus         1 mk~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~l-g~~~~l~~~~~~~~~---~~   76 (292)
T d1k0ia1           1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREA-GVDRRMARDGLVHEG---VE   76 (292)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHT-TCCHHHHHHCEEESC---EE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHc-CchHHHHhhcccccc---eE
Confidence            4679999999999999999999999999999998754  23557888999999999999 999999887655432   11


Q ss_pred             EeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEecc-EEE
Q 012845          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH-ECV  198 (455)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~-~v~  198 (455)
                      +... .+....        .............+.|..+.+.|.+.+.+.+.                   .+.+++ .+.
T Consensus        77 ~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-------------------~~~~~~~~~~  128 (292)
T d1k0ia1          77 IAFA-GQRRRI--------DLKRLSGGKTVTVYGQTEVTRDLMEAREACGA-------------------TTVYQAAEVR  128 (292)
T ss_dssp             EEET-TEEEEE--------CHHHHHTSCCEEECCHHHHHHHHHHHHHHTTC-------------------EEESSCEEEE
T ss_pred             EEec-cccccc--------ccccccccccceeecHHHHHHHHHHHHHhCCC-------------------cEEEcceeee
Confidence            1111 111100        00011112334567899999999999999876                   455555 455


Q ss_pred             EeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceE
Q 012845          199 SVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML  278 (455)
Q Consensus       199 ~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (455)
                      .+..+++.+.|++.  .+|+  +.++++|+||+|||.+|.+|++++.                                 
T Consensus       129 ~~~~~~~~~~v~~~--~~g~--~~~i~a~~vVgADG~~S~vR~~i~~---------------------------------  171 (292)
T d1k0ia1         129 LHDLQGERPYVTFE--RDGE--RLRLDCDYIAGCDGFHGISRQSIPA---------------------------------  171 (292)
T ss_dssp             EECTTSSSCEEEEE--ETTE--EEEEECSEEEECCCTTCSTGGGSCG---------------------------------
T ss_pred             eeeeccCceEEEEe--cCCc--EEEEEeCEEEECCCCCCcccceeee---------------------------------
Confidence            55566677777665  2443  3478999999999999999986410                                 


Q ss_pred             EEEEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEeceeeecccccCC
Q 012845          279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY  358 (455)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (455)
                                                                                               ..+.  .
T Consensus       172 -------------------------------------------------------------------------~~~~--~  176 (292)
T d1k0ia1         172 -------------------------------------------------------------------------ERMQ--H  176 (292)
T ss_dssp             -------------------------------------------------------------------------GGSE--E
T ss_pred             -------------------------------------------------------------------------cccc--c
Confidence                                                                                     0011  2


Q ss_pred             CcEEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHhccccc
Q 012845          359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSA  437 (455)
Q Consensus       359 ~~vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~  437 (455)
                      ++..+.||++|.++|..++|+|.++.|+..|+..+...+.. .....+..|...+..+.....+.+...-..++.++..
T Consensus       177 ~~~~~~~~~~~~~~p~~~~~~n~~~~d~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (292)
T d1k0ia1         177 GRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYRE-GRGELLERYSAICLRRIWKAERFSWWMTSVLHRFPDT  254 (292)
T ss_dssp             TTEEECGGGTEECCGGGTCHHHHHHHHHHHHHHHHHHHHHH-CCGGGGGGHHHHHHHHHHHHHHHHHHHHHHHSCCTTC
T ss_pred             cccccceeeeeecCCccccccccccccccccccceeeEecC-CCHHHhhhhHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence            77889999999999999999999999999999998877643 3467788999888888887777777766666666543

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.90  E-value=1.4e-22  Score=187.73  Aligned_cols=250  Identities=19%  Similarity=0.195  Sum_probs=176.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC-CCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~-~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      ...+|+||||||+||++|+.|+++|++|+||||++.+ ...++++.+++++.+.|+++ |+..++.....     ....+
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~-g~~~~~~~~~~-----~~~~~   76 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQ-GVELDSISVPS-----SSMEY   76 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHT-TCCGGGTCBCC-----CEEEE
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHc-CcchhhhccCC-----Cccee
Confidence            4567999999999999999999999999999998765 44577888999999999999 87654432221     12222


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                      .....+........             .........+.   ...+...+                  +..++++++|+++
T Consensus        77 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~---~~~~~~~~------------------~~~~~~~~~v~~~  122 (265)
T d2voua1          77 VDALTGERVGSVPA-------------DWRFTSYDSIY---GGLYELFG------------------PERYHTSKCLVGL  122 (265)
T ss_dssp             EETTTCCEEEEEEC-------------CCCEEEHHHHH---HHHHHHHC------------------STTEETTCCEEEE
T ss_pred             EeccCCceeccccc-------------ccccchhHHHH---HHHHHhcc------------------cceeecCcEEEEE
Confidence            22223333221110             01111222222   22222222                  1488999999999


Q ss_pred             eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCchhhhhcCCCccCCcccceeEEEEEecCCcccccccCCCceEEE
Q 012845          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF  280 (455)
Q Consensus       201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (455)
                      ...++.+.+++.   +|+    ++++|++|+|||.+|.+|..+.....                                
T Consensus       123 ~~~~~~v~v~~~---dG~----~~~~d~~v~adG~~s~~r~~~~~~~~--------------------------------  163 (265)
T d2voua1         123 SQDSETVQMRFS---DGT----KAEANWVIGADGGASVVRKRLLGIET--------------------------------  163 (265)
T ss_dssp             EECSSCEEEEET---TSC----EEEESEEEECCCTTCHHHHHHHCCCC--------------------------------
T ss_pred             EeeCCceEEEEC---CCC----EEEEEEEecccccccccccccccccc--------------------------------
Confidence            999999888877   776    78999999999999998864311000                                


Q ss_pred             EEccCceEEEEeecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHhhCCCCCCeeEEEeeceEeceeeecccccCCCc
Q 012845          281 IFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQ  360 (455)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (455)
                                                                                            .....  ...
T Consensus       164 ----------------------------------------------------------------------~~~~~--~~~  171 (265)
T d2voua1         164 ----------------------------------------------------------------------VDRMV--HGR  171 (265)
T ss_dssp             ----------------------------------------------------------------------CSCSE--ETT
T ss_pred             ----------------------------------------------------------------------ccccc--ccc
Confidence                                                                                  00000  156


Q ss_pred             EEEEcCccccCCCCcCccchhhHHHHHHHHHHHHHhHcCCCCchhhhhHHHhhhHHHHHhHHhHHHHHHHHhccccccCC
Q 012845          361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGL  440 (455)
Q Consensus       361 vvliGDAAh~~~P~~G~G~~~Al~da~~La~~L~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~  440 (455)
                      +.+.||++|...|..++|.+.+++|+..++..+.+   ..+...+|+.|+..|.++.+.++..++..-...+........
T Consensus       172 ~~~~~~~a~~~~p~~~~g~~~~~~d~~~l~~~l~~---~~~~~~~l~~~~~~r~~~~~~~~~~~r~~g~~~~~~~~~~~~  248 (265)
T d2voua1         172 VLLIGDAAVTPRPHAAAGGAKASDDARTLAEVFTK---NHDLRGSLQSWETRQLQQGHAYLNKVKKMASRLQHGGSFEPG  248 (265)
T ss_dssp             EEECGGGTSBCCGGGSCHHHHHHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCTT
T ss_pred             ccccccccccccccccccceeeeccHHHHHHHHhh---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcC
Confidence            77889999999999999999999999999998875   345678899999999999999998888776666655555555


Q ss_pred             Ccccc
Q 012845          441 DPTIA  445 (455)
Q Consensus       441 ~~~~~  445 (455)
                      +|...
T Consensus       249 ~~~~~  253 (265)
T d2voua1         249 NPAFA  253 (265)
T ss_dssp             CGGGS
T ss_pred             ChhHh
Confidence            55443

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.87  E-value=9.6e-21  Score=184.52  Aligned_cols=165  Identities=18%  Similarity=0.156  Sum_probs=99.3

Q ss_pred             ccccccccCCCCCcccccccCCCcccccCCcccCEEEECCCHHHHHHHHHHHh------CCCCEEEEcCCCCCCCCCc-c
Q 012845           12 CFSRIKTFPYPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTK------LGIKCSVLEKNKAFSTHPQ-A   84 (455)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~~A~~La~------~g~~V~l~Er~~~~~~~~~-~   84 (455)
                      |.-|+.|.+.+.+.........+ .|..+.+.+||||||||||||++|+.|+|      .|++|+||||...++.+.+ |
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~-~m~~~~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~G   80 (380)
T d2gmha1           2 KVPRITTHYTIYPRDQDKRWEGV-NMERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSG   80 (380)
T ss_dssp             CSCCCCCCTTTSCTTSCGGGSSC-CCCCCEEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCC
T ss_pred             CCCcccccccccccccCcccccc-CcccccccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCcccc
Confidence            44566666666554333333333 33334568999999999999999999998      7999999999999977775 5


Q ss_pred             cccChhHHHHHHhhhchHHHHHhcCCCccc--ccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHH
Q 012845           85 HFINNRYALVFRKLDGLAEEIERSQPPVDL--WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLL  162 (455)
Q Consensus        85 ~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~  162 (455)
                      ..+.+++++.|  +|...+   . ..+...  ...........+..  .........    ........+.+..+.+++.
T Consensus        81 gvl~~~~l~~l--~p~~~~---~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~l~  148 (380)
T d2gmha1          81 ACLDPRAFEEL--FPDWKE---K-GAPLNTPVTEDRFGILTEKYRI--PVPILPGLP----MNNHGNYVVRLGHLVSWMG  148 (380)
T ss_dssp             CEECTHHHHHH--CTTHHH---H-TCCCCEECCEEEEEEECSSCEE--ECCCCTTST----TCCTTCEECCHHHHHHHHH
T ss_pred             ccccHHHHHHH--ccchhh---h-ccccccceecceEEEeeccccc--cccccCchh----cccccceeehhhHHHHHHH
Confidence            55677665443  122211   1 111111  11111111111111  111111111    1122345678899999999


Q ss_pred             HHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceE
Q 012845          163 KQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN  208 (455)
Q Consensus       163 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~  208 (455)
                      +.+++.|+                   .+..+..+..+...++++.
T Consensus       149 ~~Ae~~g~-------------------~~~~~~~~~~~l~~~~g~~  175 (380)
T d2gmha1         149 EQAEALGV-------------------EVYPGYAAAEILFHEDGSV  175 (380)
T ss_dssp             HHHHHTTC-------------------EEETTCCEEEEEECTTSSE
T ss_pred             HHHhhccc-------------------eeeeecceeeeeeccCCce
Confidence            99999987                   7788888888777655443

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.65  E-value=4.3e-17  Score=149.23  Aligned_cols=158  Identities=17%  Similarity=0.177  Sum_probs=90.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCc---ccccC---hhHHHHH-Hhhh---chHHHHHhcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQ---AHFIN---NRYALVF-RKLD---GLAEEIERSQPP  111 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~---~~~l~---~~~~~~l-~~~~---gl~~~l~~~~~~  111 (455)
                      ++|||+||||||+|+++|+.|+++|++|+||||++.+..+..   +....   ......+ ...+   ............
T Consensus         1 M~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (251)
T d2i0za1           1 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNN   80 (251)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhh
Confidence            479999999999999999999999999999999987632110   00000   0000111 1000   000000000000


Q ss_pred             cccccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceE
Q 012845          112 VDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREI  191 (455)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i  191 (455)
                      ......+    ...+.....      ....    ...........+.+.|.+.+++.|+                   +|
T Consensus        81 ~~~~~~~----~~~g~~~~~------~~~~----~~~~~~~~~~~i~~~L~~~~~~~gv-------------------~i  127 (251)
T d2i0za1          81 EDIITFF----ENLGVKLKE------EDHG----RMFPVSNKAQSVVDALLTRLKDLGV-------------------KI  127 (251)
T ss_dssp             HHHHHHH----HHTTCCEEE------CGGG----EEEETTCCHHHHHHHHHHHHHHTTC-------------------EE
T ss_pred             HHHHHHH----HhcCCcccc------cccc----ceecccccHHHHHHHHHHHHHHcCC-------------------cc
Confidence            0000000    000000000      0000    0001122346788899999999887                   99


Q ss_pred             EeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCEEEeecCCCchh
Q 012845          192 LMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (455)
Q Consensus       192 ~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~v  239 (455)
                      +++++|+++..+++.+. +.+.   +++    ++++|.||.|+|..|..
T Consensus       128 ~~~~~v~~i~~~~~~~~~v~~~---~g~----~i~a~~vI~AtGg~S~p  169 (251)
T d2i0za1         128 RTNTPVETIEYENGQTKAVILQ---TGE----VLETNHVVIAVGGKSVP  169 (251)
T ss_dssp             ECSCCEEEEEEETTEEEEEEET---TCC----EEECSCEEECCCCSSSG
T ss_pred             cCCcEEEEEEEECCEEEEEEeC---CCC----eEecCeEEEccCCcccc
Confidence            99999999998877765 4444   664    78999999999999854

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.58  E-value=2.7e-15  Score=139.05  Aligned_cols=70  Identities=20%  Similarity=0.297  Sum_probs=59.1

Q ss_pred             cccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEE
Q 012845          150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNIL  229 (455)
Q Consensus       150 ~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~v  229 (455)
                      ..++...+.+.|.+.+.+.|+                   +|+.+++|+.++.+++.+.|.+.   +|     ++.||.|
T Consensus       146 g~i~~~~~~~~l~~~~~~~Gv-------------------~i~~~~~V~~i~~~~~~~~V~t~---~g-----~i~a~~v  198 (276)
T d1ryia1         146 VHVEPYFVCKAYVKAAKMLGA-------------------EIFEHTPVLHVERDGEALFIKTP---SG-----DVWANHV  198 (276)
T ss_dssp             CBCCHHHHHHHHHHHHHHTTC-------------------EEETTCCCCEEECSSSSEEEEET---TE-----EEEEEEE
T ss_pred             eeeecccchhHHHHHHHHcCC-------------------EEecceEEEeEEeecceEEEecC---Ce-----EEEcCEE
Confidence            456778899999999999987                   99999999999988887777665   55     7899999


Q ss_pred             EeecCCCch-hhhhcCCC
Q 012845          230 IGTDGAGST-VRKLVGID  246 (455)
Q Consensus       230 V~AdG~~S~-vr~~l~~~  246 (455)
                      |.|+|.+|. +.+.+|..
T Consensus       199 V~AaG~~s~~l~~~~G~~  216 (276)
T d1ryia1         199 VVASGVWSGMFFKQLGLN  216 (276)
T ss_dssp             EECCGGGTHHHHHHTTCC
T ss_pred             EECCCccHHHHHhhcCCC
Confidence            999999997 67777754

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.56  E-value=1.1e-14  Score=133.26  Aligned_cols=144  Identities=17%  Similarity=0.181  Sum_probs=89.3

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC----cc-cc-------------cChh-HHHHHHhhhc
Q 012845           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP----QA-HF-------------INNR-YALVFRKLDG  100 (455)
Q Consensus        40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~----~~-~~-------------l~~~-~~~~l~~~~g  100 (455)
                      |.+++||+|||||||||++|+.|+++|++|+||||.+.+..+.    .+ ..             ..++ ....|..+ .
T Consensus         1 M~~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~-~   79 (253)
T d2gqfa1           1 MSQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARY-T   79 (253)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHS-C
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhh-c
Confidence            4578999999999999999999999999999999998764210    00 00             0011 11222222 1


Q ss_pred             hHH---HHHhcCCCcccccceEEeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCC
Q 012845          101 LAE---EIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEG  177 (455)
Q Consensus       101 l~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~  177 (455)
                      ..+   .+...+...        .....                    ......-....+.+.|.+.+++.|+       
T Consensus        80 ~~~~~~~~~~~g~~~--------~~~~~--------------------~~~~~~~~a~~i~~~L~~~~~~~gV-------  124 (253)
T d2gqfa1          80 NWDFISLVAEQGITY--------HEKEL--------------------GQLFCDEGAEQIVEMLKSECDKYGA-------  124 (253)
T ss_dssp             HHHHHHHHHHTTCCE--------EECST--------------------TEEEETTCTHHHHHHHHHHHHHHTC-------
T ss_pred             ccchhhhhhhcCcce--------eeecC--------------------CccccccchhHHHHHHHHHHHHcCC-------
Confidence            111   111111110        00000                    0000112356788999999999987       


Q ss_pred             cccccccccccceEEeccEEEEeeecCCceE--EEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          178 TEGLHNHLLQGREILMGHECVSVSATDQCIN--VIASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       178 ~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~--v~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                                  +|+++++|++++..++...  +.+.  .++.    +++||.||.|+|..|
T Consensus       125 ------------~i~~~~~V~~i~~~~~~~~v~~~~~--~~~~----~~~a~~VIiAtGG~S  168 (253)
T d2gqfa1         125 ------------KILLRSEVSQVERIQNDEKVRFVLQ--VNST----QWQCKNLIVATGGLS  168 (253)
T ss_dssp             ------------EEECSCCEEEEEECCSCSSCCEEEE--ETTE----EEEESEEEECCCCSS
T ss_pred             ------------CeecCceEEEEEeecCCceeEEEEe--cCCE----EEEeCEEEEcCCccc
Confidence                        9999999999987655422  2222  1443    789999999999877

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.54  E-value=4.3e-14  Score=131.21  Aligned_cols=174  Identities=14%  Similarity=0.200  Sum_probs=102.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC----ccccc------ChhHHH-HHHhhhchHHHHHhc-C
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP----QAHFI------NNRYAL-VFRKLDGLAEEIERS-Q  109 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~----~~~~l------~~~~~~-~l~~~~gl~~~l~~~-~  109 (455)
                      ++|||+|||||++|+++|+.|+++|++|+||||.+.+...+    .+..+      .+...+ ..... .++..+.+. +
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~s~-~~~~~l~~e~~   80 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQ-ELWYELEKETH   80 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSCSSSSSCSSEEEECSSCTTCGGGHHHHHHHH-HHHHHHHHHCS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcccccCCCcceeecccCCcchhhhhccccc-ceeecchhhhh
Confidence            58999999999999999999999999999999987653211    11111      111111 11222 333333322 1


Q ss_pred             CCcccc-cceEEeecCCCCcc--------------cc---------ccCCCccc-cccccCCccccccchhhHHHHHHHH
Q 012845          110 PPVDLW-RKFIYCTSVTGPIL--------------GS---------VDHMQPQD-FEKVVSPVSVAHFSQYKLNKLLLKQ  164 (455)
Q Consensus       110 ~~~~~~-~~~~~~~~~~~~~~--------------~~---------~~~~~~~~-~~~~~~~~~~~~i~r~~l~~~L~~~  164 (455)
                      ...-.. ..............              ..         .+...... ..... ......++...+...|.+.
T Consensus        81 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~p~~~~~~~~~~~~-~~~~g~~~p~~~~~~l~~~  159 (281)
T d2gf3a1          81 HKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIF-EPNSGVLFSENCIRAYREL  159 (281)
T ss_dssp             SCCEECCCEEEEEETTCCHHHHHHHHHHHHTTCCCEEEETHHHHHHSTTCCCCTTEEEEE-ETTCEEEEHHHHHHHHHHH
T ss_pred             hccccccceeeeeecchhhhhhhhhhhhccccchhhhhhhHhhhhhhhcccccccceeee-ccccccccccccccccccc
Confidence            111000 00111111111000              00         00000000 00000 0112335567899999999


Q ss_pred             HHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEEeecCCCch-hhhhc
Q 012845          165 LEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST-VRKLV  243 (455)
Q Consensus       165 ~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S~-vr~~l  243 (455)
                      +++.|+                   +++.+++|.+++.+++++.|.+.   +|     ++.+|.||.|.|.+|. +.+.+
T Consensus       160 a~~~Gv-------------------~i~~~~~V~~i~~~~~~v~V~t~---~g-----~i~a~~VViAaG~~s~~l~~~l  212 (281)
T d2gf3a1         160 AEARGA-------------------KVLTHTRVEDFDISPDSVKIETA---NG-----SYTADKLIVSMGAWNSKLLSKL  212 (281)
T ss_dssp             HHHTTC-------------------EEECSCCEEEEEECSSCEEEEET---TE-----EEEEEEEEECCGGGHHHHGGGG
T ss_pred             cccccc-------------------cccCCcEEEEEEEECCEEEEEEC---Cc-----EEEcCEEEECCCCcchhhHHhc
Confidence            999987                   99999999999999998887765   55     6899999999999986 44555


Q ss_pred             C
Q 012845          244 G  244 (455)
Q Consensus       244 ~  244 (455)
                      |
T Consensus       213 g  213 (281)
T d2gf3a1         213 N  213 (281)
T ss_dssp             T
T ss_pred             C
Confidence            5

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.42  E-value=7.8e-13  Score=125.91  Aligned_cols=68  Identities=10%  Similarity=-0.024  Sum_probs=54.6

Q ss_pred             ccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceEEEEEeccCCcceeEEEEeCEEE
Q 012845          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI  230 (455)
Q Consensus       151 ~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV  230 (455)
                      .+.+..+.++|.+.+...+.                   .|+++++|++++..++.+.|++...+.+. ...+..+|.||
T Consensus       109 f~~~~~~~~yl~~~~~~~~~-------------------~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~-~~~~~~~d~VI  168 (335)
T d2gv8a1         109 FPHRHTIQEYQRIYAQPLLP-------------------FIKLATDVLDIEKKDGSWVVTYKGTKAGS-PISKDIFDAVS  168 (335)
T ss_dssp             SCBHHHHHHHHHHHHGGGGG-------------------GEECSEEEEEEEEETTEEEEEEEESSTTC-CEEEEEESEEE
T ss_pred             CCchHHHHHHHHHHHHHhhh-------------------cccCceEEEEEEecCCEEEEEEEecCCCC-eEEEEEeeEEE
Confidence            35788999999999887765                   89999999999999999998887433332 22356799999


Q ss_pred             eecCCCch
Q 012845          231 GTDGAGST  238 (455)
Q Consensus       231 ~AdG~~S~  238 (455)
                      .|+|.+|.
T Consensus       169 ~AtG~~s~  176 (335)
T d2gv8a1         169 ICNGHYEV  176 (335)
T ss_dssp             ECCCSSSS
T ss_pred             Eccccccc
Confidence            99999883

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.40  E-value=8.3e-13  Score=123.25  Aligned_cols=139  Identities=19%  Similarity=0.182  Sum_probs=90.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      ...+||+|||||++||++|+.|.+.|++|+||||++.+.   ..+        .....||+.-     ..+.        
T Consensus         5 ~~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iG---GtW--------~~n~ypg~~~-----d~~~--------   60 (298)
T d1w4xa1           5 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVG---GVW--------YWNRYPGARC-----DIES--------   60 (298)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC---THH--------HHCCCTTCBC-----SSCT--------
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcc---ccc--------ccCCCCCcee-----cccc--------
Confidence            467999999999999999999999999999999998762   100        1111222210     0000        


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                             ........... ..  ..+.......+..+.++|.+.+++.++.                 ..|+++++|+++
T Consensus        61 -------~~~~~s~~~~~-~~--~~~~~~~~p~~~e~~~Yl~~~a~~~~L~-----------------~~I~f~t~V~~~  113 (298)
T d1w4xa1          61 -------IEYCYSFSEEV-LQ--EWNWTERYASQPEILRYINFVADKFDLR-----------------SGITFHTTVTAA  113 (298)
T ss_dssp             -------TTSSCCSCHHH-HH--HCCCCBSSCBHHHHHHHHHHHHHHTTGG-----------------GGEECSCCEEEE
T ss_pred             -------ccccccccccc-cC--CCCCccccCccchHHHHHHHHHHHcCCc-----------------ccccCCcEEEEE
Confidence                   00000000000 00  0011122346788999999999998762                 268999999999


Q ss_pred             eec--CCceEEEEEeccCCcceeEEEEeCEEEeecCCCc
Q 012845          201 SAT--DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (455)
Q Consensus       201 ~~~--~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~S  237 (455)
                      ..+  .+.+.|.+.   ++.    ++++|+||.|+|..|
T Consensus       114 ~~de~~~~W~V~~~---~~~----~~~~~~~i~atG~ls  145 (298)
T d1w4xa1         114 AFDEATNTWTVDTN---HGD----RIRARYLIMASGQLS  145 (298)
T ss_dssp             EEETTTTEEEEEET---TCC----EEEEEEEEECCCSCC
T ss_pred             EEecCCCceeeccc---ccc----ccccceEEEeecccc
Confidence            854  355777766   554    789999999999866

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.38  E-value=1.9e-12  Score=121.25  Aligned_cols=70  Identities=16%  Similarity=0.269  Sum_probs=57.0

Q ss_pred             cccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCE
Q 012845          150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNI  228 (455)
Q Consensus       150 ~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~  228 (455)
                      ..++...+...|.+.+++.|+                   +|+.+++|+++..+++.+. |.+.   +|     +++||.
T Consensus       143 g~~~p~~l~~~l~~~a~~~gv-------------------~i~~~~~V~~i~~~~~~v~~V~T~---~g-----~i~a~~  195 (305)
T d1pj5a2         143 GLASAARAVQLLIKRTESAGV-------------------TYRGSTTVTGIEQSGGRVTGVQTA---DG-----VIPADI  195 (305)
T ss_dssp             EEECHHHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEEETTEEEEEEET---TE-----EEECSE
T ss_pred             cccchhhhhhhHHhhhhcccc-------------------cccCCceEEEEEEeCCEEEEEecc---ce-----eEECCE
Confidence            456778899999999999987                   9999999999999888765 4433   44     789999


Q ss_pred             EEeecCCCch-hhhhcCCC
Q 012845          229 LIGTDGAGST-VRKLVGID  246 (455)
Q Consensus       229 vV~AdG~~S~-vr~~l~~~  246 (455)
                      ||.|.|.+|. +.+.+|..
T Consensus       196 VV~aaG~~s~~l~~~~g~~  214 (305)
T d1pj5a2         196 VVSCAGFWGAKIGAMIGMA  214 (305)
T ss_dssp             EEECCGGGHHHHHHTTTCC
T ss_pred             EEEecchhHHHHHHHcCCc
Confidence            9999999987 55655543

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.34  E-value=1.4e-11  Score=115.59  Aligned_cols=39  Identities=31%  Similarity=0.486  Sum_probs=35.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      ...+||+|||||++||++|+.|+++|.+|+|+||.+...
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~g   52 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIG   52 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            457999999999999999999999999999999987653

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.26  E-value=4.3e-11  Score=112.91  Aligned_cols=39  Identities=28%  Similarity=0.437  Sum_probs=35.7

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      ...+||+|||+|++||++|+.|+++|.+|+|+||.+...
T Consensus        21 ~et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~g   59 (322)
T d1d4ca2          21 KETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPG   59 (322)
T ss_dssp             CEECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSC
T ss_pred             CCcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            457899999999999999999999999999999987653

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.26  E-value=1e-10  Score=110.71  Aligned_cols=63  Identities=13%  Similarity=0.017  Sum_probs=48.4

Q ss_pred             hhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCceE-EEEEeccCCcceeEEEEeCEEEeec
Q 012845          155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTD  233 (455)
Q Consensus       155 ~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~~~~~~d~vV~Ad  233 (455)
                      ..+...|.+.+.+.|+                   +|+.++.++++..+++.+. +.+....+|+  ...+.++-||.|+
T Consensus       158 ~~i~~~l~~~~~~~gv-------------------~i~~~~~~~~li~~~~~v~g~~~~~~~~g~--~~~i~Ak~VvlAT  216 (336)
T d2bs2a2         158 HTMLFAVANECLKLGV-------------------SIQDRKEAIALIHQDGKCYGAVVRDLVTGD--IIAYVAKGTLIAT  216 (336)
T ss_dssp             HHHHHHHHHHHHHHTC-------------------EEECSEEEEEEEEETTEEEEEEEEETTTCC--EEEEECSEEEECC
T ss_pred             HHHHHHHHHHHHhccc-------------------cccceeeeeecccccccccceeEEeccCCc--EEEEecCeEEEec
Confidence            4678888899988887                   9999999999988877665 4444233443  4578999999999


Q ss_pred             CCCch
Q 012845          234 GAGST  238 (455)
Q Consensus       234 G~~S~  238 (455)
                      |..+.
T Consensus       217 GG~~~  221 (336)
T d2bs2a2         217 GGYGR  221 (336)
T ss_dssp             CCCGG
T ss_pred             ccccc
Confidence            98773

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.21  E-value=1e-10  Score=110.11  Aligned_cols=39  Identities=28%  Similarity=0.417  Sum_probs=35.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      ..++||||||+|++||++|+.|+++|.+|+|+||.+...
T Consensus        17 ~e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~g   55 (317)
T d1qo8a2          17 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSG   55 (317)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSC
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            457999999999999999999999999999999987653

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=5.6e-11  Score=101.38  Aligned_cols=38  Identities=24%  Similarity=0.452  Sum_probs=35.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..+.+|+|||||||||++|+.|+++|++|+|||+.+.+
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~   78 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI   78 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCcc
Confidence            45689999999999999999999999999999999876

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=1.9e-10  Score=108.75  Aligned_cols=39  Identities=21%  Similarity=0.409  Sum_probs=35.9

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      +.+++||+|||+|+|||++|+.++++|.+|+|+||.+..
T Consensus         4 ~~~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~   42 (330)
T d1neka2           4 PVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPT   42 (330)
T ss_dssp             CEEEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGG
T ss_pred             CcccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence            457899999999999999999999999999999998654

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.14  E-value=1.9e-10  Score=91.60  Aligned_cols=100  Identities=24%  Similarity=0.350  Sum_probs=80.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      ....+++|||||+.|+=+|..|++.|.+|+|+|+.+.+.                   |.+                   
T Consensus        20 ~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll-------------------~~~-------------------   61 (119)
T d3lada2          20 NVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL-------------------PAV-------------------   61 (119)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS-------------------TTS-------------------
T ss_pred             cCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccC-------------------Ccc-------------------
Confidence            445789999999999999999999999999999887541                   011                   


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                                                       -.++.+.+.+.+++.|+                   +++.+++|+++
T Consensus        62 ---------------------------------d~ei~~~l~~~l~~~Gv-------------------~i~~~~~v~~i   89 (119)
T d3lada2          62 ---------------------------------DEQVAKEAQKILTKQGL-------------------KILLGARVTGT   89 (119)
T ss_dssp             ---------------------------------CHHHHHHHHHHHHHTTE-------------------EEEETCEEEEE
T ss_pred             ---------------------------------cchhHHHHHHHHHhcCc-------------------eeecCcEEEEE
Confidence                                             12456667777788887                   99999999999


Q ss_pred             eecCCceEEEEEeccCCcceeEEEEeCEEEeecC
Q 012845          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDG  234 (455)
Q Consensus       201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG  234 (455)
                      +..++++.+++.   ++.+ .+++.+|.|+.|.|
T Consensus        90 ~~~~~~v~v~~~---~~~~-~~~~~~D~vlvAvG  119 (119)
T d3lada2          90 EVKNKQVTVKFV---DAEG-EKSQAFDKLIVAVG  119 (119)
T ss_dssp             EECSSCEEEEEE---SSSE-EEEEEESEEEECSC
T ss_pred             EEeCCEEEEEEE---ECCC-CEEEECCEEEEeeC
Confidence            999998888877   4432 34789999999987

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.09  E-value=1.4e-10  Score=107.63  Aligned_cols=36  Identities=28%  Similarity=0.450  Sum_probs=33.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      .||+|||||++||++|+.|+++|++|+|||+++.+.
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~G   36 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLG   36 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSB
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCC
Confidence            489999999999999999999999999999998764

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=7.2e-10  Score=87.69  Aligned_cols=95  Identities=19%  Similarity=0.222  Sum_probs=75.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      +.+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.                   |.+                     
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l-------------------~~~---------------------   60 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL-------------------PSF---------------------   60 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-------------------TTS---------------------
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeecchhh-------------------hhc---------------------
Confidence            4579999999999999999999999999999987541                   000                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                    + ..+.+.+.+.+++.|+                   +++++++|..+..
T Consensus        61 ------------------------------d-~~~~~~~~~~l~~~GV-------------------~~~~~~~v~~i~~   90 (116)
T d1gesa2          61 ------------------------------D-PMISETLVEVMNAEGP-------------------QLHTNAIPKAVVK   90 (116)
T ss_dssp             ------------------------------C-HHHHHHHHHHHHHHSC-------------------EEECSCCEEEEEE
T ss_pred             ------------------------------c-hhhHHHHHHHHHHCCC-------------------EEEeCCEEEEEEE
Confidence                                          1 2455667777788887                   9999999999987


Q ss_pred             cCCc-eEEEEEeccCCcceeEEEEeCEEEeecC
Q 012845          203 TDQC-INVIASFLKEGKCTERNIQCNILIGTDG  234 (455)
Q Consensus       203 ~~~~-~~v~~~~~~~g~~~~~~~~~d~vV~AdG  234 (455)
                      .+++ +.+.+.   +|+    ++.+|.||.|.|
T Consensus        91 ~~~~~~~v~~~---~g~----~~~~D~vi~a~G  116 (116)
T d1gesa2          91 NTDGSLTLELE---DGR----SETVDCLIWAIG  116 (116)
T ss_dssp             CTTSCEEEEET---TSC----EEEESEEEECSC
T ss_pred             cCCcEEEEEEC---CCC----EEEcCEEEEecC
Confidence            6554 556665   675    789999999988

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=9.5e-10  Score=102.93  Aligned_cols=38  Identities=26%  Similarity=0.326  Sum_probs=33.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~   78 (455)
                      ..++||+|||+|+|||++|+.+++.  |.+|+|+||....
T Consensus         3 ~~~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~   42 (311)
T d1kf6a2           3 TFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPM   42 (311)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGG
T ss_pred             ceecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence            4679999999999999999999986  7799999998643

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.06  E-value=1.1e-09  Score=87.28  Aligned_cols=101  Identities=19%  Similarity=0.285  Sum_probs=77.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEe
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~  121 (455)
                      .+.+++|||||+.|+=+|..|++.|.+|+|+|+.+.+-                   |.+                    
T Consensus        22 ~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l-------------------~~~--------------------   62 (122)
T d1v59a2          22 IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG-------------------ASM--------------------   62 (122)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-------------------SSS--------------------
T ss_pred             CCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccc-------------------hhh--------------------
Confidence            34689999999999999999999999999999987641                   010                    


Q ss_pred             ecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEee
Q 012845          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (455)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~  201 (455)
                                                     + .++.+.+.+.+++.|+                   +++++++|++++
T Consensus        63 -------------------------------d-~ei~~~l~~~l~~~GV-------------------~i~~~~~v~~v~   91 (122)
T d1v59a2          63 -------------------------------D-GEVAKATQKFLKKQGL-------------------DFKLSTKVISAK   91 (122)
T ss_dssp             -------------------------------C-HHHHHHHHHHHHHTTC-------------------EEECSEEEEEEE
T ss_pred             -------------------------------h-hhhHHHHHHHHHhccc-------------------eEEeCCEEEEEE
Confidence                                           1 2466667777888887                   999999999999


Q ss_pred             ecCCceEEEEEeccCCcceeEEEEeCEEEee
Q 012845          202 ATDQCINVIASFLKEGKCTERNIQCNILIGT  232 (455)
Q Consensus       202 ~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~A  232 (455)
                      ..+++..+.+...++..+..+++++|+|+.|
T Consensus        92 ~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          92 RNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             EETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             EeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            8777655544333333344568899999876

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.03  E-value=1.4e-09  Score=88.18  Aligned_cols=99  Identities=13%  Similarity=0.269  Sum_probs=73.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+-.+                   .                     
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~-------------------~---------------------   74 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLER-------------------V---------------------   74 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT-------------------T---------------------
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCcceeeeeeccccccc-------------------c---------------------
Confidence            468999999999999999999999999999998764100                   0                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                    .-..+.+.+.+.+++.|+                   +++++++|+.++.
T Consensus        75 ------------------------------~~~~~~~~~~~~~~~~GV-------------------~i~~~~~v~~i~~  105 (133)
T d1q1ra2          75 ------------------------------TAPPVSAFYEHLHREAGV-------------------DIRTGTQVCGFEM  105 (133)
T ss_dssp             ------------------------------SCHHHHHHHHHHHHHHTC-------------------EEECSCCEEEEEE
T ss_pred             ------------------------------cchhhhhhhhhccccccc-------------------EEEeCCeEEEEEE
Confidence                                          011344556677778887                   9999999999987


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecC
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDG  234 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG  234 (455)
                      ..+...++....++|+    ++.+|+||.|.|
T Consensus       106 ~~~~~~v~~v~~~~G~----~i~~D~vi~a~G  133 (133)
T d1q1ra2         106 STDQQKVTAVLCEDGT----RLPADLVIAGIG  133 (133)
T ss_dssp             CTTTCCEEEEEETTSC----EEECSEEEECCC
T ss_pred             eCCCceEEEEECCCCC----EEECCEEEEeeC
Confidence            5443222221123776    789999999987

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.02  E-value=1.6e-10  Score=109.04  Aligned_cols=38  Identities=34%  Similarity=0.440  Sum_probs=34.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      ...+|+||||||+||++|+.|+++|++|+|||+.+.+.
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~G   66 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPG   66 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSB
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            45689999999999999999999999999999987664

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.00  E-value=1.2e-09  Score=87.37  Aligned_cols=102  Identities=22%  Similarity=0.304  Sum_probs=81.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      ....+++|||||..|+=+|..|++.|.+|+|+|+.+..-+                   .                    
T Consensus        24 ~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~-------------------~--------------------   64 (125)
T d1ojta2          24 EVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ-------------------G--------------------   64 (125)
T ss_dssp             CCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST-------------------T--------------------
T ss_pred             ccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccc-------------------c--------------------
Confidence            3456899999999999999999999999999999865410                   0                    


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                                                     + -..+.+.|.+.+++.|+                   +++.++++.++
T Consensus        65 -------------------------------~-d~~~~~~l~~~l~~~gv-------------------~~~~~~~v~~v   93 (125)
T d1ojta2          65 -------------------------------A-DRDLVKVWQKQNEYRFD-------------------NIMVNTKTVAV   93 (125)
T ss_dssp             -------------------------------S-CHHHHHHHHHHHGGGEE-------------------EEECSCEEEEE
T ss_pred             -------------------------------c-hhhHHHHHHHHHHHcCc-------------------ccccCcEEEEE
Confidence                                           0 12456667788888886                   99999999999


Q ss_pred             eecCCceEEEEEeccCCcceeEEEEeCEEEeecCC
Q 012845          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGA  235 (455)
Q Consensus       201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~  235 (455)
                      +.+++++.+++.   ++.+..+++++|+|+.|.|+
T Consensus        94 ~~~~~g~~v~~~---~~~g~~~~i~~D~vl~A~GR  125 (125)
T d1ojta2          94 EPKEDGVYVTFE---GANAPKEPQRYDAVLVAAGR  125 (125)
T ss_dssp             EEETTEEEEEEE---SSSCCSSCEEESCEEECCCE
T ss_pred             EEcCCcEEEEEE---eCCCCeEEEEcCEEEEecCC
Confidence            998888888877   33333347899999999994

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=6.1e-10  Score=105.65  Aligned_cols=35  Identities=31%  Similarity=0.525  Sum_probs=33.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      ||+|||||++||++|+.|+++|++|+|||+++.+.
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~G   35 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVG   35 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSB
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCc
Confidence            89999999999999999999999999999988663

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.99  E-value=2e-09  Score=85.30  Aligned_cols=97  Identities=18%  Similarity=0.378  Sum_probs=75.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEe
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~  121 (455)
                      ...+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-                   +++                    
T Consensus        21 ~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il-------------------~~~--------------------   61 (117)
T d1ebda2          21 VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL-------------------SGF--------------------   61 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS-------------------TTS--------------------
T ss_pred             cCCeEEEECCCccceeeeeeecccccEEEEEEecceec-------------------ccc--------------------
Confidence            44689999999999999999999999999999987641                   011                    


Q ss_pred             ecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEee
Q 012845          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (455)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~  201 (455)
                                                     + ..+.+.+.+.+++.|+                   +++.+++|++++
T Consensus        62 -------------------------------d-~~~~~~l~~~l~~~GI-------------------~i~~~~~v~~i~   90 (117)
T d1ebda2          62 -------------------------------E-KQMAAIIKKRLKKKGV-------------------EVVTNALAKGAE   90 (117)
T ss_dssp             -------------------------------C-HHHHHHHHHHHHHTTC-------------------EEEESEEEEEEE
T ss_pred             -------------------------------c-chhHHHHHHHHHhcCC-------------------EEEcCCEEEEEE
Confidence                                           1 1455667777788887                   999999999999


Q ss_pred             ecCCceEEEEEeccCCcceeEEEEeCEEEee
Q 012845          202 ATDQCINVIASFLKEGKCTERNIQCNILIGT  232 (455)
Q Consensus       202 ~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~A  232 (455)
                      ..++++.+++.  .+|.  .+++.+|.||.+
T Consensus        91 ~~~~~~~v~~~--~~g~--~~~i~~D~Vlvs  117 (117)
T d1ebda2          91 EREDGVTVTYE--ANGE--TKTIDADYVLVT  117 (117)
T ss_dssp             EETTEEEEEEE--ETTE--EEEEEESEEEEC
T ss_pred             EcCCEEEEEEE--eCCC--EEEEEeEEEEEC
Confidence            88888777665  2443  347899999863

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.98  E-value=1.2e-09  Score=100.52  Aligned_cols=38  Identities=26%  Similarity=0.458  Sum_probs=34.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAFS   79 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~-g~~V~l~Er~~~~~   79 (455)
                      ..+||+||||||+||++|+.|+++ |++|+||||.+.+.
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~G   70 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPG   70 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCC
Confidence            478999999999999999999875 99999999998764

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.98  E-value=2.2e-09  Score=97.10  Aligned_cols=40  Identities=20%  Similarity=0.426  Sum_probs=35.4

Q ss_pred             cCCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        39 ~~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ||..+.+|+|||||++||++|+.|+++|++|+||||....
T Consensus         2 ~~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~   41 (268)
T d1c0pa1           2 MMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPE   41 (268)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             CCCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            3455679999999999999999999999999999997643

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.96  E-value=2.6e-10  Score=99.05  Aligned_cols=118  Identities=18%  Similarity=0.183  Sum_probs=77.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      ..++||+||||||+|+.+|+.|+|.|.+|+|+|+.........+.....                          ...  
T Consensus         3 ~~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~--------------------------~~~--   54 (192)
T d1vdca1           3 THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTT--------------------------TDV--   54 (192)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGC--------------------------SEE--
T ss_pred             cccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccc--------------------------hhh--
Confidence            5689999999999999999999999999999998765432211110000                          000  


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                           ....                . ....+...+|...+.+.+.+.|+                   .+..+ .|.++
T Consensus        55 -----~~~~----------------~-~~~~~~~~el~~~~~~q~~~~g~-------------------~i~~~-~V~~~   92 (192)
T d1vdca1          55 -----ENFP----------------G-FPEGILGVELTDKFRKQSERFGT-------------------TIFTE-TVTKV   92 (192)
T ss_dssp             -----CCST----------------T-CTTCEEHHHHHHHHHHHHHHTTC-------------------EEECC-CCCEE
T ss_pred             -----hccc----------------c-ccccccchHHHHHHHHHHHhhcc-------------------eeeee-eEEec
Confidence                 0000                0 01123466788888888888886                   66555 57788


Q ss_pred             eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCC
Q 012845          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAG  236 (455)
Q Consensus       201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~  236 (455)
                      +..++...+...    ..    .+.+|.++.+.|..
T Consensus        93 ~~~~~~~~v~~~----~~----~~~~~~~~~a~g~~  120 (192)
T d1vdca1          93 DFSSKPFKLFTD----SK----AILADAVILAIGAV  120 (192)
T ss_dssp             ECSSSSEEEECS----SE----EEEEEEEEECCCEE
T ss_pred             ccccCcEEeccc----ce----eeeeeeEEEEeeee
Confidence            776666555432    22    67899999999963

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1e-08  Score=82.04  Aligned_cols=102  Identities=20%  Similarity=0.204  Sum_probs=78.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||+.|+=+|..|++.|.+|+|+||.+.+-                   |++                     
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l-------------------~~~---------------------   61 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-------------------RSF---------------------   61 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-------------------TTS---------------------
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccc-------------------cch---------------------
Confidence            4589999999999999999999999999999987541                   011                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                    + ..+.+.+.+.+++.|+                   +++.++++++++.
T Consensus        62 ------------------------------d-~~~~~~~~~~l~~~Gv-------------------~i~~~~~v~~i~~   91 (125)
T d3grsa2          62 ------------------------------D-SMISTNCTEELENAGV-------------------EVLKFSQVKEVKK   91 (125)
T ss_dssp             ------------------------------C-HHHHHHHHHHHHHTTC-------------------EEETTEEEEEEEE
T ss_pred             ------------------------------h-hHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEEE
Confidence                                          1 1355667777788887                   9999999999999


Q ss_pred             cCCceEEEEEeccCCcce--eEEEEeCEEEeecC
Q 012845          203 TDQCINVIASFLKEGKCT--ERNIQCNILIGTDG  234 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~--~~~~~~d~vV~AdG  234 (455)
                      .++++.+.......|...  .....+|+||.|.|
T Consensus        92 ~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          92 TLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             ETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             cCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            888877766544444322  22467999999987

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.92  E-value=5.1e-09  Score=83.55  Aligned_cols=99  Identities=16%  Similarity=0.335  Sum_probs=78.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEe
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~  121 (455)
                      ...+++|||||..|+=+|..|++.|.+|+|+||.+.+.                   |++                    
T Consensus        24 ~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l-------------------~~~--------------------   64 (123)
T d1dxla2          24 IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV-------------------PTM--------------------   64 (123)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS-------------------TTS--------------------
T ss_pred             cCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC-------------------chh--------------------
Confidence            34689999999999999999999999999999987641                   011                    


Q ss_pred             ecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEee
Q 012845          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (455)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~  201 (455)
                                                     + ..+...|.+.+++.|+                   +|+.++++.+++
T Consensus        65 -------------------------------d-~~~~~~l~~~l~~~GI-------------------~i~~~~~v~~i~   93 (123)
T d1dxla2          65 -------------------------------D-AEIRKQFQRSLEKQGM-------------------KFKLKTKVVGVD   93 (123)
T ss_dssp             -------------------------------C-HHHHHHHHHHHHHSSC-------------------CEECSEEEEEEE
T ss_pred             -------------------------------h-hcchhhhhhhhhcccc-------------------eEEcCCceEEEE
Confidence                                           1 2455667777888887                   999999999999


Q ss_pred             ecCCceEEEEEeccCCcceeEEEEeCEEEee
Q 012845          202 ATDQCINVIASFLKEGKCTERNIQCNILIGT  232 (455)
Q Consensus       202 ~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~A  232 (455)
                      ..++++.+++...++|+  +.++++|.|+.|
T Consensus        94 ~~~~~~~v~~~~~~~g~--~~~i~~D~vLvA  122 (123)
T d1dxla2          94 TSGDGVKLTVEPSAGGE--QTIIEADVVLVS  122 (123)
T ss_dssp             CSSSSEEEEEEESSSCC--CEEEEESEEECC
T ss_pred             EccCeEEEEEEECCCCe--EEEEEcCEEEEc
Confidence            88888887776544554  347899998876

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.91  E-value=5.3e-10  Score=100.59  Aligned_cols=40  Identities=25%  Similarity=0.356  Sum_probs=37.6

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      |+..|||||||||++||++|+.|+++|++|+||||++.+.
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~G   41 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYG   41 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCC
Confidence            5789999999999999999999999999999999998774

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=5.7e-09  Score=97.18  Aligned_cols=37  Identities=35%  Similarity=0.504  Sum_probs=34.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      .+++||||||+|+|||++|+.+++.| +|+|+||.+..
T Consensus         5 ~~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~   41 (305)
T d1chua2           5 EHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVT   41 (305)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTT
T ss_pred             cccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCC
Confidence            56799999999999999999999988 99999998765

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.89  E-value=6.8e-09  Score=82.47  Aligned_cols=92  Identities=17%  Similarity=0.302  Sum_probs=71.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+-.+                                         
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~-----------------------------------------   68 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR-----------------------------------------   68 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT-----------------------------------------
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccc-----------------------------------------
Confidence            468999999999999999999999999999998754100                                         


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                  .++ ..+.+.+.+.+++.|+                   +++.+++|+++..
T Consensus        69 ----------------------------~~~-~~~~~~~~~~l~~~GV-------------------~i~~~~~v~~~~~  100 (121)
T d1d7ya2          69 ----------------------------AAP-ATLADFVARYHAAQGV-------------------DLRFERSVTGSVD  100 (121)
T ss_dssp             ----------------------------TSC-HHHHHHHHHHHHTTTC-------------------EEEESCCEEEEET
T ss_pred             ----------------------------cCC-HHHHHHHHHHHHHCCc-------------------EEEeCCEEEEEeC
Confidence                                        001 2455667777888887                   9999999988753


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecC
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDG  234 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG  234 (455)
                        +  .+++.   +|+    ++.+|+||.|.|
T Consensus       101 --~--~v~l~---dg~----~i~~D~vi~a~G  121 (121)
T d1d7ya2         101 --G--VVLLD---DGT----RIAADMVVVGIG  121 (121)
T ss_dssp             --T--EEEET---TSC----EEECSEEEECSC
T ss_pred             --C--EEEEC---CCC----EEECCEEEEeeC
Confidence              3  24555   776    889999999987

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.88  E-value=5.4e-09  Score=82.66  Aligned_cols=96  Identities=16%  Similarity=0.241  Sum_probs=74.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceE
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~---g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~  119 (455)
                      ..+|+|||||++|+-+|..|++.   |.+|+|+|+.+.+-                   |++                  
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il-------------------~~~------------------   60 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL-------------------RGF------------------   60 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS-------------------TTS------------------
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccccccc-------------------ccc------------------
Confidence            46899999999999999876654   88999999876541                   011                  


Q ss_pred             EeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEE
Q 012845          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (455)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~  199 (455)
                                                       + +++.+.+.+.+++.|+                   +++.+++|++
T Consensus        61 ---------------------------------d-~~~~~~~~~~l~~~GI-------------------~v~~~~~v~~   87 (117)
T d1feca2          61 ---------------------------------D-SELRKQLTEQLRANGI-------------------NVRTHENPAK   87 (117)
T ss_dssp             ---------------------------------C-HHHHHHHHHHHHHTTE-------------------EEEETCCEEE
T ss_pred             ---------------------------------c-chhhHHHHHHHhhCcE-------------------EEEcCCEEEE
Confidence                                             1 2456667777888887                   9999999999


Q ss_pred             eeecCCce-EEEEEeccCCcceeEEEEeCEEEeecCC
Q 012845          200 VSATDQCI-NVIASFLKEGKCTERNIQCNILIGTDGA  235 (455)
Q Consensus       200 i~~~~~~~-~v~~~~~~~g~~~~~~~~~d~vV~AdG~  235 (455)
                      ++..+++. .+.+.   +|+    ++.+|+||.|.|+
T Consensus        88 i~~~~~g~~~v~~~---~g~----~i~~D~Vi~a~GR  117 (117)
T d1feca2          88 VTKNADGTRHVVFE---SGA----EADYDVVMLAIGR  117 (117)
T ss_dssp             EEECTTSCEEEEET---TSC----EEEESEEEECSCE
T ss_pred             EEECCCCEEEEEEC---CCC----EEEcCEEEEecCC
Confidence            98765554 45555   675    7899999999994

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=8.1e-09  Score=84.05  Aligned_cols=96  Identities=16%  Similarity=0.274  Sum_probs=77.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHh----CCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceE
Q 012845           44 VPVLIVGAGPVGLVLSILLTK----LGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~----~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~  119 (455)
                      .+|+|||||++|+=+|..|++    .|.+|+++|+.+.+-.                   ..                  
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~-------------------~~------------------   80 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG-------------------KI------------------   80 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTT-------------------TT------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCc-------------------cc------------------
Confidence            579999999999999999964    4899999998765410                   00                  


Q ss_pred             EeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEE
Q 012845          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (455)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~  199 (455)
                                                      ++ ..+.+.+.+.+++.|+                   +++++++|.+
T Consensus        81 --------------------------------~~-~~~~~~~~~~l~~~GV-------------------~~~~~~~V~~  108 (137)
T d1m6ia2          81 --------------------------------LP-EYLSNWTMEKVRREGV-------------------KVMPNAIVQS  108 (137)
T ss_dssp             --------------------------------SC-HHHHHHHHHHHHTTTC-------------------EEECSCCEEE
T ss_pred             --------------------------------CC-HHHHHHHHHHHHhCCc-------------------EEEeCCEEEE
Confidence                                            11 2456667888888887                   9999999999


Q ss_pred             eeecCCceEEEEEeccCCcceeEEEEeCEEEeecCC
Q 012845          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGA  235 (455)
Q Consensus       200 i~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~  235 (455)
                      ++.+++.+.+++.   +|+    ++.+|+||.|.|.
T Consensus       109 i~~~~~~~~v~l~---~G~----~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2         109 VGVSSGKLLIKLK---DGR----KVETDHIVAAVGL  137 (137)
T ss_dssp             EEEETTEEEEEET---TSC----EEEESEEEECCCE
T ss_pred             EEecCCEEEEEEC---CCC----EEECCEEEEeecC
Confidence            9988888888877   776    8899999999983

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.86  E-value=4e-09  Score=83.16  Aligned_cols=36  Identities=36%  Similarity=0.576  Sum_probs=33.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..+++|||||+.|+-+|..|++.|.+|+|+|+.+.+
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~i   56 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI   56 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccc
Confidence            457999999999999999999999999999998654

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.84  E-value=1.4e-08  Score=89.14  Aligned_cols=34  Identities=32%  Similarity=0.499  Sum_probs=32.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      .|||+|||||+||+.+|++++|.|.++.||+++.
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~   35 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   35 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEecc
Confidence            4899999999999999999999999999999873

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.82  E-value=2.4e-08  Score=79.30  Aligned_cols=100  Identities=12%  Similarity=0.183  Sum_probs=73.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ...|+|||||+.|+=+|..|++.|.+|+++|+.+...                   +++                     
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l-------------------~~~---------------------   61 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK-------------------LIK---------------------   61 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT-------------------TCC---------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh-------------------ccc---------------------
Confidence            3689999999999999999999999999999986541                   011                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                    + ..+.+.+.+.+++.|+                   .++.++++++++.
T Consensus        62 ------------------------------d-~~~~~~~~~~l~~~gI-------------------~v~~~~~v~~i~~   91 (121)
T d1mo9a2          62 ------------------------------D-NETRAYVLDRMKEQGM-------------------EIISGSNVTRIEE   91 (121)
T ss_dssp             ------------------------------S-HHHHHHHHHHHHHTTC-------------------EEESSCEEEEEEE
T ss_pred             ------------------------------c-cchhhhhhhhhhcccc-------------------EEEcCCEEEEEEe
Confidence                                          1 1345556667777776                   9999999999998


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEeecC
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDG  234 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG  234 (455)
                      ++++..........+.  ++++++|+||.|.|
T Consensus        92 ~~~~~~~~~~~~~~~~--~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          92 DANGRVQAVVAMTPNG--EMRIETDFVFLGLG  121 (121)
T ss_dssp             CTTSBEEEEEEEETTE--EEEEECSCEEECCC
T ss_pred             cCCceEEEEEEEeCCC--CEEEEcCEEEEEEC
Confidence            7665432222111222  34789999999987

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.82  E-value=2.1e-08  Score=79.92  Aligned_cols=93  Identities=15%  Similarity=0.284  Sum_probs=71.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-                   +..                     
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l-------------------~~~---------------------   69 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPL-------------------GVY---------------------   69 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT-------------------TTT---------------------
T ss_pred             CCEEEEECChHHHHHHHHHhhccceEEEEEEecCccc-------------------ccc---------------------
Confidence            4589999999999999999999999999999986531                   000                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                   ++ ..+.+.+.+.+++.|+                   ++++++++.+++.
T Consensus        70 -----------------------------~d-~~~~~~~~~~l~~~gv-------------------~~~~~~~v~~i~~  100 (123)
T d1nhpa2          70 -----------------------------LD-KEFTDVLTEEMEANNI-------------------TIATGETVERYEG  100 (123)
T ss_dssp             -----------------------------CC-HHHHHHHHHHHHTTTE-------------------EEEESCCEEEEEC
T ss_pred             -----------------------------cc-hhhHHHHHHHhhcCCe-------------------EEEeCceEEEEEc
Confidence                                         11 2455667777788887                   9999999999986


Q ss_pred             cCCceEEEEEeccCCcceeEEEEeCEEEee
Q 012845          203 TDQCINVIASFLKEGKCTERNIQCNILIGT  232 (455)
Q Consensus       203 ~~~~~~v~~~~~~~g~~~~~~~~~d~vV~A  232 (455)
                      ++ .+.....   +|+    .+.+|+||.|
T Consensus       101 ~~-~~~~v~~---dg~----~i~~D~vi~a  122 (123)
T d1nhpa2         101 DG-RVQKVVT---DKN----AYDADLVVVA  122 (123)
T ss_dssp             SS-BCCEEEE---SSC----EEECSEEEEC
T ss_pred             CC-CEEEEEe---CCC----EEECCEEEEE
Confidence            43 4444445   665    7899999976

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.81  E-value=3.4e-08  Score=78.41  Aligned_cols=100  Identities=15%  Similarity=0.217  Sum_probs=73.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEe
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~  121 (455)
                      ...+++|||||+.|+=+|..|++.|.+|+|+++....                    +++                    
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l--------------------~~~--------------------   58 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILL--------------------RGF--------------------   58 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS--------------------TTS--------------------
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCCeEEEEEechhh--------------------ccC--------------------
Confidence            3468999999999999999999999999999975211                    011                    


Q ss_pred             ecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEee
Q 012845          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (455)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~  201 (455)
                                                     + .++.+.+.+.+++.|+                   +|+.++.|++++
T Consensus        59 -------------------------------D-~~~~~~l~~~l~~~Gv-------------------~i~~~~~v~~~~   87 (122)
T d1h6va2          59 -------------------------------D-QDMANKIGEHMEEHGI-------------------KFIRQFVPTKIE   87 (122)
T ss_dssp             -------------------------------C-HHHHHHHHHHHHHTTE-------------------EEEESCEEEEEE
T ss_pred             -------------------------------C-HHHHHHHHHHHHHCCC-------------------EEEECCEEEEEE
Confidence                                           1 2456678888888887                   999999999997


Q ss_pred             ecC----CceEEEEEeccCCcceeEEEEeCEEEeecC
Q 012845          202 ATD----QCINVIASFLKEGKCTERNIQCNILIGTDG  234 (455)
Q Consensus       202 ~~~----~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG  234 (455)
                      ..+    ..+.++..  ..+.......++|.|+.|.|
T Consensus        88 ~~~~~~~~~~~v~~~--~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          88 QIEAGTPGRLKVTAK--STNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             EEECSTTCEEEEEEE--CTTSCEEEEEEESEEECCCC
T ss_pred             EecCCCccEEEEEEE--ECCCCcEEEEECCEEEEEeC
Confidence            532    23445544  23333344568999999987

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=1.5e-08  Score=87.28  Aligned_cols=113  Identities=17%  Similarity=0.311  Sum_probs=75.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEE
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~  120 (455)
                      .++.||+||||||+|+.+|+.|+|.|.+|+||||.....     ....         .           .....+.    
T Consensus         3 ~k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g-----~~~~---------~-----------~~i~~~~----   53 (190)
T d1trba1           3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGG-----QLTT---------T-----------TEVENWP----   53 (190)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTG-----GGGG---------C-----------SBCCCST----
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccc-----cccc---------c-----------chhhhhh----
Confidence            357899999999999999999999999999999875421     0000         0           0000000    


Q ss_pred             eecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEe
Q 012845          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (455)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i  200 (455)
                                               . ..-.+...++.+.+.+.+.+.+.                   .+..+ +|+.+
T Consensus        54 -------------------------~-~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~-~V~~~   87 (190)
T d1trba1          54 -------------------------G-DPNDLTGPLLMERMHEHATKFET-------------------EIIFD-HINKV   87 (190)
T ss_dssp             -------------------------T-CCSSCBHHHHHHHHHHHHHHTTC-------------------EEECC-CEEEE
T ss_pred             -------------------------c-cccccchHHHHHHHHHHHHhcCc-------------------EEecc-eeEEE
Confidence                                     0 00113345677777778888775                   55544 68888


Q ss_pred             eecCCceEEEEEeccCCcceeEEEEeCEEEeecCCC
Q 012845          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAG  236 (455)
Q Consensus       201 ~~~~~~~~v~~~~~~~g~~~~~~~~~d~vV~AdG~~  236 (455)
                      ...++...++..   ..     .+.++.+|.+.|..
T Consensus        88 ~~~~~~~~v~~~---~~-----~~~~~~viva~G~~  115 (190)
T d1trba1          88 DLQNRPFRLNGD---NG-----EYTCDALIIATGAS  115 (190)
T ss_dssp             ECSSSSEEEEES---SC-----EEEEEEEEECCCEE
T ss_pred             ecCCCcEEEEEe---ee-----eEeeeeeeeeccee
Confidence            877776666543   33     67899999999953

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.80  E-value=1.7e-08  Score=79.54  Aligned_cols=93  Identities=17%  Similarity=0.290  Sum_probs=72.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceEEee
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~~~~  122 (455)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+||.+.+-                   +++                     
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il-------------------~~~---------------------   61 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL-------------------RKF---------------------   61 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC-------------------TTS---------------------
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhcccc-------------------ccc---------------------
Confidence            4579999999999999999999999999999987541                   011                     


Q ss_pred             cCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeee
Q 012845          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (455)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~  202 (455)
                                                    + ..+.+.+.+.+++.|+                   +++.+++|++++.
T Consensus        62 ------------------------------d-~~~~~~~~~~l~~~gV-------------------~i~~~~~v~~i~~   91 (117)
T d1onfa2          62 ------------------------------D-ESVINVLENDMKKNNI-------------------NIVTFADVVEIKK   91 (117)
T ss_dssp             ------------------------------C-HHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEE
T ss_pred             ------------------------------c-HHHHHHHHHHHHhCCC-------------------EEEECCEEEEEEE
Confidence                                          1 2566667778888887                   9999999999986


Q ss_pred             cCCc-eEEEEEeccCCcceeEEE-EeCEEEee
Q 012845          203 TDQC-INVIASFLKEGKCTERNI-QCNILIGT  232 (455)
Q Consensus       203 ~~~~-~~v~~~~~~~g~~~~~~~-~~d~vV~A  232 (455)
                      .+++ +.+++.   +|+    ++ .+|.||.|
T Consensus        92 ~~~~~~~v~~~---~G~----~~~~~D~Vi~A  116 (117)
T d1onfa2          92 VSDKNLSIHLS---DGR----IYEHFDHVIYC  116 (117)
T ss_dssp             SSTTCEEEEET---TSC----EEEEESEEEEC
T ss_pred             cCCCeEEEEEC---CCC----EEEeCCEEEEe
Confidence            6544 556665   665    44 47999976

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.75  E-value=1.8e-08  Score=80.18  Aligned_cols=36  Identities=25%  Similarity=0.461  Sum_probs=32.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+..
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l   67 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF   67 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEeccccc
Confidence            368999999999999999999999999999987643

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.72  E-value=1.9e-07  Score=88.38  Aligned_cols=39  Identities=23%  Similarity=0.264  Sum_probs=34.5

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHh----CCCCEEEEcCCCCC
Q 012845           40 NEAVVPVLIVGAGPVGLVLSILLTK----LGIKCSVLEKNKAF   78 (455)
Q Consensus        40 ~~~~~dVvIVGgG~aGl~~A~~La~----~g~~V~l~Er~~~~   78 (455)
                      +..++||||||+|+|||++|+.|++    +|.+|+|+||.+..
T Consensus        18 e~~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~   60 (356)
T d1jnra2          18 EVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVE   60 (356)
T ss_dssp             EEEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTT
T ss_pred             eEEecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCC
Confidence            3567999999999999999999975    69999999998654

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.66  E-value=6.2e-09  Score=92.59  Aligned_cols=39  Identities=31%  Similarity=0.537  Sum_probs=36.0

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      |.++|||+||||||||+++|+.|++.|.+|+|||++...
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~   40 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL   40 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence            468999999999999999999999999999999987654

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.66  E-value=9.4e-08  Score=75.26  Aligned_cols=93  Identities=18%  Similarity=0.253  Sum_probs=70.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCCCCCCCCcccccChhHHHHHHhhhchHHHHHhcCCCcccccceE
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~---g~~V~l~Er~~~~~~~~~~~~l~~~~~~~l~~~~gl~~~l~~~~~~~~~~~~~~  119 (455)
                      ..+|+|||||+.|+=+|..|+..   |.+|+|+|+.+.+-                   |++                  
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL-------------------~~~------------------   62 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL-------------------RGF------------------   62 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS-------------------TTS------------------
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh-------------------ccc------------------
Confidence            45899999999999999877655   56799999876541                   011                  


Q ss_pred             EeecCCCCccccccCCCccccccccCCccccccchhhHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEE
Q 012845          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (455)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~  199 (455)
                                                       + ..+.+.+.+.+++.|+                   +++.++++++
T Consensus        63 ---------------------------------d-~~~~~~l~~~l~~~GV-------------------~v~~~~~v~~   89 (117)
T d1aoga2          63 ---------------------------------D-HTLREELTKQLTANGI-------------------QILTKENPAK   89 (117)
T ss_dssp             ---------------------------------C-HHHHHHHHHHHHHTTC-------------------EEEESCCEEE
T ss_pred             ---------------------------------c-hHHHHHHHHHHHhcCc-------------------EEEcCCEEEE
Confidence                                             1 2455667777888887                   9999999999


Q ss_pred             eeecCC-ceEEEEEeccCCcceeEEEEeCEEEee
Q 012845          200 VSATDQ-CINVIASFLKEGKCTERNIQCNILIGT  232 (455)
Q Consensus       200 i~~~~~-~~~v~~~~~~~g~~~~~~~~~d~vV~A  232 (455)
                      ++..++ ...+++.   +|+    ++.+|.||.|
T Consensus        90 ie~~~~~~~~v~~~---~G~----~i~~D~Vi~A  116 (117)
T d1aoga2          90 VELNADGSKSVTFE---SGK----KMDFDLVMMA  116 (117)
T ss_dssp             EEECTTSCEEEEET---TSC----EEEESEEEEC
T ss_pred             EEEcCCCeEEEEEC---CCc----EEEeCEEEEe
Confidence            987554 4556665   776    7899999976

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.63  E-value=1.3e-08  Score=92.05  Aligned_cols=36  Identities=31%  Similarity=0.474  Sum_probs=33.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAFS   79 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~~~   79 (455)
                      +||+|||||||||++|+.|+++|+ +|+||||++.+.
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~G   37 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIG   37 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSB
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCC
Confidence            489999999999999999999997 699999988764

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=6.6e-08  Score=82.46  Aligned_cols=32  Identities=34%  Similarity=0.646  Sum_probs=31.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      |||+||||||+|+.+|+.+++.|.+|+|||++
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            89999999999999999999999999999975

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.60  E-value=1.4e-08  Score=89.70  Aligned_cols=37  Identities=38%  Similarity=0.624  Sum_probs=34.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ++|||+||||||||+++|+.|+|.|.+|+|||+...+
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~   38 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGK   38 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCC
Confidence            6899999999999999999999999999999997654

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.55  E-value=3.7e-08  Score=87.76  Aligned_cols=38  Identities=29%  Similarity=0.428  Sum_probs=35.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ....+|+||||||||+++|..|+++|++|+|||+.+.+
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~   84 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI   84 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeecccc
Confidence            46789999999999999999999999999999999876

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=2.5e-08  Score=93.63  Aligned_cols=40  Identities=25%  Similarity=0.452  Sum_probs=36.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST   80 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~   80 (455)
                      .++.+|+|||||+|||+||+.|+++|++|+|||+++.+..
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GG   42 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG   42 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBT
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcc
Confidence            3567899999999999999999999999999999987743

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=2.7e-08  Score=92.22  Aligned_cols=36  Identities=36%  Similarity=0.442  Sum_probs=34.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      +||||||||++||++|+.|++.|++|+|+|+++.++
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iG   37 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIG   37 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSS
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcc
Confidence            699999999999999999999999999999998874

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.51  E-value=3.2e-08  Score=87.83  Aligned_cols=38  Identities=26%  Similarity=0.538  Sum_probs=35.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...|||+|||||||||++|+.|++.|.+|+|||+.+..
T Consensus         4 ~~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~   41 (229)
T d1ojta1           4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL   41 (229)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCS
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            46799999999999999999999999999999998754

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.51  E-value=8e-08  Score=86.95  Aligned_cols=33  Identities=18%  Similarity=0.432  Sum_probs=31.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      |||+||||||+|+.+|+.+++.|.+|.|+|+..
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~   34 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   34 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            899999999999999999999999999999853

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.49  E-value=4.6e-08  Score=90.25  Aligned_cols=37  Identities=27%  Similarity=0.390  Sum_probs=33.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST   80 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~~   80 (455)
                      .+|+|||||||||++|+.|+++|++|+|||+++.+..
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG   38 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG   38 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcC
Confidence            4699999999999999999999999999999887643

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.48  E-value=4.5e-08  Score=86.19  Aligned_cols=37  Identities=38%  Similarity=0.603  Sum_probs=34.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      .+|||+||||||||+++|+.+++.|.+|+|||+....
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~   38 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGAL   38 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence            4699999999999999999999999999999997665

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=4.7e-08  Score=85.87  Aligned_cols=35  Identities=20%  Similarity=0.377  Sum_probs=32.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ++|||+||||||||+++|+.|++.|.+|+|+|+..
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~   35 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE   35 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            47999999999999999999999999999999853

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.44  E-value=7e-08  Score=85.84  Aligned_cols=37  Identities=24%  Similarity=0.269  Sum_probs=34.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..|||+||||||||+++|+.+++.|.+|+|+|+.+..
T Consensus         2 ~dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~   38 (235)
T d1h6va1           2 YDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPT   38 (235)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            4799999999999999999999999999999988754

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.43  E-value=9.2e-07  Score=76.22  Aligned_cols=34  Identities=21%  Similarity=0.204  Sum_probs=30.3

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAF   78 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g--~~V~l~Er~~~~   78 (455)
                      +|+|||||++|+.+|..|++.+  .+|+||||.+.+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Confidence            5999999999999999999984  579999998765

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.43  E-value=8.3e-08  Score=82.64  Aligned_cols=37  Identities=24%  Similarity=0.519  Sum_probs=33.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~-V~l~Er~~~~   78 (455)
                      .+.+|+||||||+||.+|+.|+++|++ |+||||.+..
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~   40 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYV   40 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence            467999999999999999999999995 9999998764

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.39  E-value=1.1e-07  Score=83.51  Aligned_cols=36  Identities=39%  Similarity=0.601  Sum_probs=33.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .++||+||||||+|+++|+.+++.|.+|+|+||...
T Consensus         2 ~~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~   37 (223)
T d1ebda1           2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNL   37 (223)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCC
Confidence            479999999999999999999999999999998653

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.38  E-value=9.8e-08  Score=88.93  Aligned_cols=37  Identities=27%  Similarity=0.460  Sum_probs=34.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      +.+|+|||||++||++|+.|++.|++|+|||+++.++
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iG   38 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG   38 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCc
Confidence            4679999999999999999999999999999999875

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.37  E-value=5.8e-08  Score=86.36  Aligned_cols=36  Identities=25%  Similarity=0.303  Sum_probs=32.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCC-------CCEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLG-------IKCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g-------~~V~l~Er~~~~   78 (455)
                      +++|+|||||||||+||+.|+++|       ++|+||||.+.+
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~   44 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   44 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCC
Confidence            468999999999999999999987       579999998876

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.37  E-value=5.1e-07  Score=85.74  Aligned_cols=33  Identities=27%  Similarity=0.506  Sum_probs=31.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      .||||||+|++|+.+|..|+++|++|+|||+..
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            589999999999999999999999999999963

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.36  E-value=1.3e-07  Score=89.99  Aligned_cols=39  Identities=26%  Similarity=0.405  Sum_probs=36.0

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      |..+|||||||+|++|+.+|..|++.|++|+|+|+....
T Consensus         1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~   39 (379)
T d2f5va1           1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   39 (379)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CCCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence            467899999999999999999999999999999998654

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.36  E-value=1.4e-07  Score=83.08  Aligned_cols=36  Identities=33%  Similarity=0.541  Sum_probs=33.9

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +.++||+||||||+|+.+|+.+++.|.+|+|+|+..
T Consensus         3 ~~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~   38 (220)
T d1lvla1           3 TIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA   38 (220)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            578999999999999999999999999999999864

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2.3e-07  Score=81.52  Aligned_cols=35  Identities=31%  Similarity=0.502  Sum_probs=32.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      .+|||+||||||+|+.+|..+++.|.+|+|+|+..
T Consensus         2 ~~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~   36 (221)
T d3grsa1           2 ASYDYLVIGGGSGGLASARRAAELGARAAVVESHK   36 (221)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            36999999999999999999999999999999864

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.8e-07  Score=81.97  Aligned_cols=38  Identities=13%  Similarity=0.315  Sum_probs=32.8

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCC--EEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIK--CSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~--V~l~Er~~~~   78 (455)
                      +.++++||||||++|+.+|..|.+.|.+  |+++++.+.+
T Consensus         2 p~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~   41 (213)
T d1m6ia1           2 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   41 (213)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            3578999999999999999999998865  9999886554

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.27  E-value=1.6e-06  Score=72.35  Aligned_cols=33  Identities=33%  Similarity=0.545  Sum_probs=29.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      +|+|||||++|+-+|..|++ +.+|+|+|+.+.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~   34 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVP   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSC
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccc
Confidence            69999999999999999976 7899999987654

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.25  E-value=2.5e-07  Score=81.86  Aligned_cols=35  Identities=26%  Similarity=0.379  Sum_probs=31.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~   78 (455)
                      ++|+|||||||||+||..|+++  |++|+|||+.+.+
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~   38 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   38 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            4899999999999999999876  7899999999876

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.20  E-value=5.2e-07  Score=80.12  Aligned_cols=30  Identities=20%  Similarity=0.283  Sum_probs=26.7

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEK   74 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er   74 (455)
                      +|+|||||++||++|+.|+++|++|+++|+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~   31 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLD   31 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCE
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEee
Confidence            599999999999999999999987665555

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.18  E-value=2.4e-06  Score=75.55  Aligned_cols=33  Identities=18%  Similarity=0.466  Sum_probs=28.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCC---CCEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLG---IKCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g---~~V~l~Er~~   76 (455)
                      .+|+||||||||+++|+.+++.|   .+|+|+|+..
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            47999999999999999998876   5699999853

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.17  E-value=1.2e-06  Score=84.09  Aligned_cols=38  Identities=32%  Similarity=0.326  Sum_probs=34.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g-~~V~l~Er~~~~   78 (455)
                      .+.||+||||||++|+.+|..|++.| ++|+|||+....
T Consensus        22 ~~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~   60 (391)
T d1gpea1          22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (391)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             CCeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCCC
Confidence            34699999999999999999999997 899999999643

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.15  E-value=8.3e-07  Score=82.34  Aligned_cols=39  Identities=36%  Similarity=0.512  Sum_probs=34.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFST   80 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~--g~~V~l~Er~~~~~~   80 (455)
                      .++||+||||||+||++|+.|+++  |++|+|||+.+.+..
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~   89 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGG   89 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcc
Confidence            468999999999999999999965  999999999987643

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.13  E-value=9e-07  Score=78.29  Aligned_cols=36  Identities=19%  Similarity=0.337  Sum_probs=32.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~   77 (455)
                      +.|||+||||||||+++|+.+++.|. +|+|+|+...
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~   38 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMV   38 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecc
Confidence            57999999999999999999999986 6899998643

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.13  E-value=1.8e-06  Score=73.27  Aligned_cols=37  Identities=19%  Similarity=0.282  Sum_probs=31.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ++.+|+|||||++|+-+|..|++.|.+|+|++..+..
T Consensus         2 m~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~   38 (183)
T d1d7ya1           2 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEA   38 (183)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSC
T ss_pred             CCCCEEEECccHHHHHHHHHHHhcCCceEEEEEeccc
Confidence            3456999999999999999999999887777765443

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.08  E-value=7.7e-07  Score=79.17  Aligned_cols=37  Identities=22%  Similarity=0.334  Sum_probs=33.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~~   78 (455)
                      ++|||+||||||||+++|+.+++.|. +|.|+|+....
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~   39 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHH   39 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccC
Confidence            68999999999999999999999986 59999987654

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.01  E-value=2.5e-06  Score=76.88  Aligned_cols=38  Identities=16%  Similarity=0.266  Sum_probs=35.5

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ++.|||+||||||+|+.+|+.|++.|.+|+|+|+.+..
T Consensus        40 ~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~l   77 (261)
T d1mo9a1          40 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFL   77 (261)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcc
Confidence            56899999999999999999999999999999998765

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.00  E-value=2.4e-06  Score=81.05  Aligned_cols=36  Identities=33%  Similarity=0.576  Sum_probs=33.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      -.++||||||+|++|+.+|..|+++|++|+|+|+..
T Consensus         5 ~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   40 (370)
T d3coxa1           5 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   40 (370)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            457999999999999999999999999999999863

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.98  E-value=2.3e-06  Score=80.96  Aligned_cols=35  Identities=34%  Similarity=0.521  Sum_probs=33.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .||+||||+|++|+.+|..|++.|.+|+|+|+...
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~   36 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   36 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccCC
Confidence            69999999999999999999999999999999853

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.80  E-value=9.8e-06  Score=77.26  Aligned_cols=37  Identities=30%  Similarity=0.355  Sum_probs=33.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKA   77 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g-~~V~l~Er~~~   77 (455)
                      .+.||+||||||.+|+.+|..|++.+ ++|+|||+.+.
T Consensus        15 ~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~   52 (385)
T d1cf3a1          15 GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSY   52 (385)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred             CCeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence            34699999999999999999999985 89999999864

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.71  E-value=9.1e-06  Score=76.46  Aligned_cols=37  Identities=32%  Similarity=0.386  Sum_probs=33.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...||+||||+|+||+.+|..|++. ++|+|||+.+.+
T Consensus        24 ~~~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~~   60 (351)
T d1ju2a1          24 EGSYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSLP   60 (351)
T ss_dssp             EEEEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBCG
T ss_pred             cCCccEEEECccHHHHHHHHHhcCC-CCEEEEecCCCC
Confidence            3469999999999999999999986 999999999754

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.71  E-value=3.9e-05  Score=64.51  Aligned_cols=36  Identities=25%  Similarity=0.260  Sum_probs=32.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      +-+|+|||||++|+-+|..|++.|.+|+|+++.+.+
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~   38 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT   38 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence            458999999999999999999999999888877654

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.60  E-value=0.0001  Score=60.37  Aligned_cols=35  Identities=14%  Similarity=0.097  Sum_probs=30.3

Q ss_pred             cCEEEE--CCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           44 VPVLIV--GAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        44 ~dVvIV--GgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..|+|+  |||..|+-+|..|++.|.+|+|+|+.+.+
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA   76 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            455555  99999999999999999999999987654

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.44  E-value=4e-05  Score=64.00  Aligned_cols=35  Identities=23%  Similarity=0.434  Sum_probs=30.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAF   78 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g--~~V~l~Er~~~~   78 (455)
                      .+|+|||||++|+.+|..|++.+  .+|+|||+++..
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~   39 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDY   39 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCE
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCcc
Confidence            47999999999999999999987  479999987653

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=0.00011  Score=54.32  Aligned_cols=37  Identities=22%  Similarity=0.276  Sum_probs=33.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...+|+|+|.|.+|+++|..|++.|.+|+++|.+..+
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~   40 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCc
Confidence            3567999999999999999999999999999987654

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.14  E-value=0.00015  Score=60.72  Aligned_cols=33  Identities=15%  Similarity=0.212  Sum_probs=31.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      .+|.|||+|..|+++|..|+++|++|.+|+|++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            469999999999999999999999999999864

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.01  E-value=0.00019  Score=59.71  Aligned_cols=34  Identities=32%  Similarity=0.338  Sum_probs=31.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ..|+|||+|-.|..+|..|+++|++|+|+||+..
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            5799999999999999999999999999999854

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.98  E-value=0.006  Score=49.11  Aligned_cols=36  Identities=14%  Similarity=0.204  Sum_probs=31.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~-V~l~Er~~~~   78 (455)
                      +.+|+|||||-+|+=+|..|.+.|.+ |+++.|++..
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~   81 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFV   81 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGG
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChh
Confidence            45799999999999999999999876 8899987654

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.006  Score=47.34  Aligned_cols=37  Identities=22%  Similarity=0.267  Sum_probs=33.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...+|+|||||-+.+-.|..|++..-+|+|+-|.+..
T Consensus        29 ~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~   65 (126)
T d1fl2a2          29 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM   65 (126)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSC
T ss_pred             CCceEEEEeCCHHHHHHHHhhhccCCceEEEeccccc
Confidence            4679999999999999999999999999999988654

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.00045  Score=56.73  Aligned_cols=34  Identities=18%  Similarity=0.238  Sum_probs=31.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      +|+|||+|-.|.++|..|++.|++|++++|.+..
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~   35 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQP   35 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHH
Confidence            6999999999999999999999999999998753

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.013  Score=45.25  Aligned_cols=37  Identities=14%  Similarity=0.385  Sum_probs=33.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...+|+|||||-+.+-.|..|++..-+|+|+-|++..
T Consensus        26 ~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~   62 (126)
T d1trba2          26 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF   62 (126)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccc
Confidence            4579999999999999999999999999999888654

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00042  Score=58.62  Aligned_cols=35  Identities=17%  Similarity=0.365  Sum_probs=32.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      -.+|+|||+|..|...|..++++|++|+++|+++.
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            35899999999999999999999999999998754

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.0037  Score=50.80  Aligned_cols=28  Identities=25%  Similarity=0.414  Sum_probs=24.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCE
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKC   69 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V   69 (455)
                      ...+|+|||||..|+-+|..|++.|.++
T Consensus        28 ~gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          28 VGNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CCSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             cCCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            3468999999999999999999998753

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.66  E-value=0.00056  Score=53.96  Aligned_cols=33  Identities=27%  Similarity=0.476  Sum_probs=31.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            699999999999999999999999999999753

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.66  E-value=0.00068  Score=56.95  Aligned_cols=33  Identities=18%  Similarity=0.212  Sum_probs=31.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      .+|+|||+|..|...|..++++|++|+++|+++
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999864

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.42  E-value=0.0021  Score=51.85  Aligned_cols=36  Identities=25%  Similarity=0.440  Sum_probs=32.4

Q ss_pred             cccCEEEEC-CCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           42 AVVPVLIVG-AGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        42 ~~~dVvIVG-gG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .-.+|+||| .|..|..+|..|.++|++|.++|+...
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~   44 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   44 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc
Confidence            345899999 699999999999999999999998764

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.41  E-value=0.0014  Score=53.02  Aligned_cols=39  Identities=15%  Similarity=0.212  Sum_probs=34.2

Q ss_pred             cCCcccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (455)
Q Consensus        39 ~~~~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~   77 (455)
                      |+.++.+|.|||+|-.|.++|+.|+..++ ++.|+|.++.
T Consensus         3 ~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~   42 (154)
T d1pzga1           3 LVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   42 (154)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccc
Confidence            45678999999999999999999999887 7999997753

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.22  E-value=0.0019  Score=51.76  Aligned_cols=37  Identities=24%  Similarity=0.411  Sum_probs=32.7

Q ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 012845           40 NEAVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (455)
Q Consensus        40 ~~~~~dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~   76 (455)
                      |..+.+|.|||+|-.|.++|+.|+..|+  ++.|||++.
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            3567899999999999999999999984  799999864

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.20  E-value=0.002  Score=52.34  Aligned_cols=35  Identities=26%  Similarity=0.394  Sum_probs=32.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ...+|+|+|+|.+|+.++..+.+.|-+|+++|.+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            45789999999999999999999999999999863

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.20  E-value=0.0023  Score=52.78  Aligned_cols=36  Identities=25%  Similarity=0.296  Sum_probs=33.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..+|+|+|+|.+|+.+|....+.|-.|++||.+...
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~   64 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAAT   64 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTT
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHH
Confidence            468999999999999999999999999999988653

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.20  E-value=0.0019  Score=52.79  Aligned_cols=32  Identities=22%  Similarity=0.265  Sum_probs=30.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +|.|||.|..|.++|..|+++|++|+++||++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            59999999999999999999999999999874

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.18  E-value=0.0016  Score=51.17  Aligned_cols=33  Identities=18%  Similarity=0.349  Sum_probs=30.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +++|||+|-.|..+|..|.+.|++|+++|+++.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~   34 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE   34 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcHH
Confidence            689999999999999999999999999998753

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.18  E-value=0.03  Score=43.41  Aligned_cols=37  Identities=27%  Similarity=0.503  Sum_probs=34.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...+|+|||||-+.+-.|+.|++.--+|+|+-|++.+
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~   69 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF   69 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccc
Confidence            5689999999999999999999999999999988765

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.09  E-value=0.0017  Score=54.48  Aligned_cols=33  Identities=24%  Similarity=0.425  Sum_probs=30.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      .+|+|||+|--|.++|..|++.|++|+|+.|++
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            369999999999999999999999999999864

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.91  E-value=0.0025  Score=54.06  Aligned_cols=32  Identities=25%  Similarity=0.273  Sum_probs=30.2

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +|.|||.|-.|+.+|..|++.|++|..||.+.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            59999999999999999999999999999764

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.71  E-value=0.0033  Score=52.24  Aligned_cols=32  Identities=31%  Similarity=0.460  Sum_probs=29.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      ++|.|||+|--|.++|..|++.|.+|.|+.|.
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            36999999999999999999999999999774

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=95.60  E-value=0.0084  Score=48.48  Aligned_cols=36  Identities=17%  Similarity=0.319  Sum_probs=32.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~   76 (455)
                      ..+.+|.|||+|-.|.++|+.|+..|+  ++.|||++.
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            346799999999999999999999997  699999864

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=95.44  E-value=0.0084  Score=49.40  Aligned_cols=34  Identities=12%  Similarity=0.307  Sum_probs=31.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .+|.|||-|..|..+|..|.++|++|.+|+|++.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~   36 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   36 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            5799999999999999999999999999999864

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.43  E-value=0.006  Score=46.30  Aligned_cols=36  Identities=28%  Similarity=0.204  Sum_probs=32.2

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      -....|+|||||..|..-|..|.+.|.+|+++....
T Consensus        10 l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~   45 (113)
T d1pjqa1          10 LRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (113)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            346789999999999999999999999999998654

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.26  E-value=0.01  Score=48.98  Aligned_cols=34  Identities=26%  Similarity=0.483  Sum_probs=31.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .+|.|||-|..|..+|..|.++|++|.++||++.
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~   35 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYS   35 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            3699999999999999999999999999998753

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.07  E-value=0.0067  Score=50.42  Aligned_cols=32  Identities=28%  Similarity=0.450  Sum_probs=29.5

Q ss_pred             CEEEE-CCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           45 PVLIV-GAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        45 dVvIV-GgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +|+|| |+|-.|.++|..|+++|++|+|..|++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999 669999999999999999999999875

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.01  E-value=0.012  Score=56.29  Aligned_cols=39  Identities=10%  Similarity=0.288  Sum_probs=36.4

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~~   79 (455)
                      +..+||||+|.|+.=+.+|.+|++.|.+|+-+||++-.+
T Consensus         4 P~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYG   42 (491)
T d1vg0a1           4 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYG   42 (491)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCC
Confidence            367999999999999999999999999999999998764

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.88  E-value=0.0096  Score=48.26  Aligned_cols=33  Identities=30%  Similarity=0.347  Sum_probs=30.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +|.|||-|..|..+|..|+++|++|.++||++.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~   34 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE   34 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            599999999999999999999999999998754

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.79  E-value=0.0079  Score=52.26  Aligned_cols=38  Identities=13%  Similarity=0.128  Sum_probs=32.0

Q ss_pred             CCcEEEEcCccccCCCCcCccc-hhhHHHHHHHHHHHHH
Q 012845          358 YNQIILAGDACHRFPPAGGFGM-NTGVQDAHNLAWKIAS  395 (455)
Q Consensus       358 ~~~vvliGDAAh~~~P~~G~G~-~~Al~da~~La~~L~~  395 (455)
                      .+||+++|||+|.+.|.+++|. ..++++|..|+++|.+
T Consensus       306 ~~~v~~~GD~~~~~~~~~~~gA~~sG~~aA~~l~~~~~~  344 (347)
T d1b5qa1         306 VGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQK  344 (347)
T ss_dssp             BTTEEECSGGGCSSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEccccCcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence            4899999999999999999984 6677788888777764

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.77  E-value=0.0074  Score=48.31  Aligned_cols=35  Identities=26%  Similarity=0.382  Sum_probs=31.3

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~   75 (455)
                      .....|+|||||..|+.-|..|.+.|.+|+|+...
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            34678999999999999999999999999999643

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.71  E-value=0.011  Score=47.88  Aligned_cols=33  Identities=21%  Similarity=0.370  Sum_probs=30.8

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +|.|||-|..|..+|..|.++|++|.+|||++.
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~   35 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQS   35 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCCeEEEEECchh
Confidence            499999999999999999999999999998743

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.50  E-value=0.012  Score=47.37  Aligned_cols=35  Identities=20%  Similarity=0.472  Sum_probs=31.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~   76 (455)
                      .+.+|.|||+|-.|.++|+.|+..|+  ++.|+|++.
T Consensus        18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          18 SRCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            45689999999999999999999986  699999764

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.41  E-value=0.017  Score=46.06  Aligned_cols=36  Identities=28%  Similarity=0.476  Sum_probs=31.6

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~   76 (455)
                      ....+|.|||+|-.|.++|+.|+..|+  ++.|+|.++
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            345789999999999999999999986  699999764

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=94.38  E-value=0.021  Score=45.05  Aligned_cols=34  Identities=24%  Similarity=0.284  Sum_probs=29.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~~   77 (455)
                      .+|.|||+|-.|.++|+.|+..++  ++.|||.+..
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            479999999999999999999986  6999998764

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.27  E-value=0.02  Score=42.72  Aligned_cols=36  Identities=19%  Similarity=0.031  Sum_probs=30.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ...+|+|||+|.+|.-.|..|++..-+|++.-+++.
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~   66 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG   66 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCc
Confidence            467999999999999999999999888776666543

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.16  E-value=0.019  Score=46.69  Aligned_cols=33  Identities=30%  Similarity=0.548  Sum_probs=29.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      -.|+|+|+|+.|+.++..++..|.+|+++|+++
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            469999999999999999988999999999764

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=94.10  E-value=0.021  Score=45.15  Aligned_cols=34  Identities=24%  Similarity=0.304  Sum_probs=30.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~   77 (455)
                      .+|.|||+|-.|.++|+.|+..++ ++.++|.+..
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~   36 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEG   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccc
Confidence            479999999999999999999886 7999997653

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.09  E-value=0.021  Score=46.44  Aligned_cols=32  Identities=34%  Similarity=0.395  Sum_probs=28.3

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~   76 (455)
                      +|+|||.|..|.++|..|.+.|+  +|..+|++.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            49999999999999999999997  577788764

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.04  E-value=0.65  Score=39.08  Aligned_cols=36  Identities=17%  Similarity=0.309  Sum_probs=30.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHh--------------------CCC-CEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTK--------------------LGI-KCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~--------------------~g~-~V~l~Er~~~~   78 (455)
                      ..+|+|||+|=.++=+|..|.+                    .|. +|+++.|+...
T Consensus        39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~   95 (225)
T d1cjca1          39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL   95 (225)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChH
Confidence            4689999999999999999998                    465 59999988654

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.01  E-value=0.019  Score=46.90  Aligned_cols=33  Identities=30%  Similarity=0.596  Sum_probs=29.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      -.|+|+|+|+.|+.++..+...|. +|.++|+++
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            369999999999999999999998 699999764

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.88  E-value=0.025  Score=45.15  Aligned_cols=34  Identities=21%  Similarity=0.240  Sum_probs=31.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      +|.|||.|-.|..+|..|.++|++|+++++.+..
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~   35 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSP   35 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCH
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhH
Confidence            5999999999999999999999999999977653

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.87  E-value=0.019  Score=46.49  Aligned_cols=34  Identities=21%  Similarity=0.299  Sum_probs=30.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      .-.|+|+|+|+.|++++..++..|.+|.++++++
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            3469999999999999998888899999999764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.85  E-value=0.023  Score=46.22  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=30.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .-.|+|+|+|+.|++++..++..|.+|.++++++.
T Consensus        28 g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          28 GKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CCEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            34699999999999988887778999999998754

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=93.73  E-value=0.031  Score=44.09  Aligned_cols=33  Identities=27%  Similarity=0.464  Sum_probs=29.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~   76 (455)
                      .+|.|||+|-.|.++|+.|+..|+  ++.|+|.+.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            469999999999999999999987  699999764

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.72  E-value=0.052  Score=40.68  Aligned_cols=36  Identities=19%  Similarity=0.459  Sum_probs=32.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..+|.|+|||=-|-.+|.+..+.|++|.++|.++..
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            457999999999999999999999999999987654

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=93.70  E-value=0.034  Score=43.84  Aligned_cols=33  Identities=21%  Similarity=0.405  Sum_probs=29.8

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~~   77 (455)
                      +|.|||+|-.|.++|+.|+..|+  ++.|+|.++.
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~   36 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence            69999999999999999999985  7999998764

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.69  E-value=0.023  Score=47.42  Aligned_cols=31  Identities=26%  Similarity=0.478  Sum_probs=28.2

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +|.|||.|-.||.+|..|++ |++|+.||-++
T Consensus         2 kI~ViGlG~vGl~~a~~~a~-g~~V~g~Din~   32 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             EEEEECCChhHHHHHHHHHC-CCcEEEEECCH
Confidence            59999999999999998875 99999999775

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.57  E-value=0.026  Score=44.66  Aligned_cols=32  Identities=31%  Similarity=0.504  Sum_probs=28.9

Q ss_pred             CEEEECC-CHHHHHHHHHHHhCCC--CEEEEcCCC
Q 012845           45 PVLIVGA-GPVGLVLSILLTKLGI--KCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGg-G~aGl~~A~~La~~g~--~V~l~Er~~   76 (455)
                      +|.|||+ |-.|.++|+.|+..|+  ++.|+|.+.
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            6999996 9999999999999985  799999864

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.55  E-value=0.037  Score=44.01  Aligned_cols=35  Identities=20%  Similarity=0.447  Sum_probs=30.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~   77 (455)
                      +.+|.|||+|-.|.++|+.|.+.++ ++.|||.+..
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~   38 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN   38 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCC
Confidence            4589999999999999999999886 5999998653

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=93.48  E-value=0.04  Score=43.85  Aligned_cols=33  Identities=12%  Similarity=0.243  Sum_probs=30.7

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .|+|+|.|..|..++..|.+.|.+|+++|.++.
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~   37 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPE   37 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccch
Confidence            599999999999999999999999999998753

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=93.23  E-value=0.033  Score=44.08  Aligned_cols=33  Identities=24%  Similarity=0.403  Sum_probs=29.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~   76 (455)
                      .+|.|||+|-.|.++|+.|+..|.  ++.|+|.+.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            479999999999999999999885  699999764

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=93.06  E-value=0.044  Score=44.52  Aligned_cols=35  Identities=17%  Similarity=0.299  Sum_probs=32.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ...+|+|+|+|=++-+++++|++.|.+|+|+.|+.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            35689999999999999999999999999999875

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=92.92  E-value=0.03  Score=46.06  Aligned_cols=33  Identities=33%  Similarity=0.558  Sum_probs=29.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      -.|+|+|+|+.|+.++..+...|. +|.++|+++
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CEEEEECCCccchhheeccccccccccccccccc
Confidence            469999999999999999988898 699999864

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.59  E-value=0.049  Score=43.34  Aligned_cols=32  Identities=13%  Similarity=0.106  Sum_probs=30.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      +|.|||+|-.|.++|..|.+.|+++++++|+.
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            59999999999999999999999999999874

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=92.54  E-value=0.067  Score=43.60  Aligned_cols=34  Identities=21%  Similarity=0.219  Sum_probs=29.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      .-.|+|+|+|+.|++++..++..|. +|.++|+++
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             CCEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            4579999999999998888888897 699999764

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.44  E-value=0.05  Score=42.80  Aligned_cols=32  Identities=19%  Similarity=0.134  Sum_probs=28.8

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~   76 (455)
                      +|.|||+|-.|.++|+.|+..|.  ++.|+|.+.
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            69999999999999999998875  599999764

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.44  E-value=0.046  Score=43.08  Aligned_cols=31  Identities=29%  Similarity=0.523  Sum_probs=27.8

Q ss_pred             CEEEECC-CHHHHHHHHHHHhCCC--CEEEEcCC
Q 012845           45 PVLIVGA-GPVGLVLSILLTKLGI--KCSVLEKN   75 (455)
Q Consensus        45 dVvIVGg-G~aGl~~A~~La~~g~--~V~l~Er~   75 (455)
                      +|+|||| |-.|.++|+.|+..|+  ++.++|.+
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence            6999996 9999999999999986  58999965

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=92.36  E-value=0.067  Score=43.27  Aligned_cols=35  Identities=17%  Similarity=0.324  Sum_probs=31.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      .+.+|+|+|+|=++-+.++.|++.|. +|.|+.|+.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            45689999999999999999999997 699998864

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=92.35  E-value=0.049  Score=44.10  Aligned_cols=34  Identities=24%  Similarity=0.302  Sum_probs=29.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      -.|+|+|+|+.|++++..+...|.++.+++++..
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~   65 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA   65 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CEEEEeccchHHHHHHHHhhcccccchhhccchh
Confidence            4699999999999988888888999999997654

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.25  E-value=0.58  Score=39.10  Aligned_cols=36  Identities=19%  Similarity=0.405  Sum_probs=29.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHH--------------------hCCCC-EEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLT--------------------KLGIK-CSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La--------------------~~g~~-V~l~Er~~~~   78 (455)
                      ..+|+|||+|=.++=+|..|.                    +.|.+ |+++-|+...
T Consensus        39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~   95 (216)
T d1lqta1          39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL   95 (216)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred             CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChH
Confidence            358999999999999999887                    56764 9999887654

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.98  E-value=0.062  Score=42.12  Aligned_cols=32  Identities=28%  Similarity=0.420  Sum_probs=28.5

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~--~V~l~Er~~   76 (455)
                      +|.|||+|-.|.++|+.|+..++  ++.|+|.+.
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            69999999999999999998875  699999764

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=91.86  E-value=0.085  Score=40.21  Aligned_cols=37  Identities=30%  Similarity=0.443  Sum_probs=32.7

Q ss_pred             cccCEEEECCCH-----------HHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGP-----------VGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~-----------aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...+|+|+|+||           ++..++.+|++.|+++.++.-++.-
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~T   53 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPAT   53 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTC
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHh
Confidence            457899999998           7999999999999999999988753

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=91.69  E-value=0.082  Score=46.73  Aligned_cols=37  Identities=30%  Similarity=0.310  Sum_probs=32.5

Q ss_pred             cccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGg-G~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ++.+|+|+|| |..|..++..|.++|++|+++.|....
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~   39 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVV   39 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcc
Confidence            3567999997 999999999999999999999987543

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=91.65  E-value=0.11  Score=39.12  Aligned_cols=37  Identities=19%  Similarity=0.326  Sum_probs=32.5

Q ss_pred             cccCEEEECCCH-----------HHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGP-----------VGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~-----------aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ...+|+|+|+||           ++..++.+|++.|+++.++--++.-
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT   50 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET   50 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh
Confidence            356899999996           7899999999999999999988754

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.64  E-value=0.069  Score=42.93  Aligned_cols=34  Identities=21%  Similarity=0.251  Sum_probs=29.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      .-.|+|+|+|+.|++++..+...|.+|.++++++
T Consensus        28 g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          28 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            3469999999999999988888999999998754

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=91.61  E-value=0.082  Score=46.42  Aligned_cols=37  Identities=22%  Similarity=0.319  Sum_probs=33.2

Q ss_pred             cccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGg-G~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      .+.+|+|.|| |..|..++..|.+.|++|.++.|.+..
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            3578999998 999999999999999999999997654

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=91.40  E-value=0.075  Score=42.14  Aligned_cols=32  Identities=19%  Similarity=0.312  Sum_probs=29.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNK   76 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g-~~V~l~Er~~   76 (455)
                      +|.|||+|-.|.++|..|.++| ++|.+++|++
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            6999999999999999988887 8999999875

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=91.28  E-value=0.08  Score=43.14  Aligned_cols=34  Identities=24%  Similarity=0.238  Sum_probs=29.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~~-V~l~Er~~~   77 (455)
                      -.|+|+|+|+.|++++..+...|.+ |.+.|.++.
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE   64 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCceeeeeccchH
Confidence            4699999999999999999999985 777887653

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.28  E-value=0.083  Score=43.10  Aligned_cols=33  Identities=24%  Similarity=0.370  Sum_probs=29.7

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~   77 (455)
                      -|+|+|+|+.|+.+...++..|. +|.++|.++.
T Consensus        32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          32 TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            49999999999999999999996 6999998754

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.04  E-value=0.0059  Score=52.80  Aligned_cols=36  Identities=17%  Similarity=0.153  Sum_probs=33.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ..+|+|||||..|+-+|..|++.|.+|+|++|++..
T Consensus       180 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~  215 (233)
T d1djqa3         180 EAPRLIADATFTGHRVAREIEEANPQIAIPYKRETI  215 (233)
T ss_dssp             TSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCC
T ss_pred             CCceeEecCchHHHHHHHHHHhcCCceEEEEecccc
Confidence            467999999999999999999999999999998764

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.87  E-value=0.088  Score=43.91  Aligned_cols=34  Identities=26%  Similarity=0.425  Sum_probs=30.6

Q ss_pred             cCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           44 VPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGg-G~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      .+|+|.|| |..|..++..|.++|++|+++.|++.
T Consensus         4 kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~   38 (205)
T d1hdoa_           4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (205)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChh
Confidence            35999995 99999999999999999999998754

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=90.44  E-value=0.097  Score=45.19  Aligned_cols=34  Identities=32%  Similarity=0.471  Sum_probs=30.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      +.+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            5789999999999999999999999 599999654

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.38  E-value=0.092  Score=43.62  Aligned_cols=34  Identities=35%  Similarity=0.416  Sum_probs=28.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      .-.|+|+|+|+.|++++..++..|. +|.++|..+
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            4479999999999999988888877 688888653

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.33  E-value=0.12  Score=35.77  Aligned_cols=34  Identities=24%  Similarity=0.283  Sum_probs=31.2

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      .|.|+|||==|-.++.+..+.|++|.+++..+..
T Consensus         3 ~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           3 QVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             EEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            5999999999999999999999999999976554

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=90.10  E-value=0.16  Score=41.42  Aligned_cols=37  Identities=14%  Similarity=0.298  Sum_probs=32.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~~   78 (455)
                      ...+|+|+|+|=+|-+++++|.+.|. +++|+.|++..
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~   54 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEF   54 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHH
Confidence            34689999999999999999999998 59999998653

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=89.42  E-value=0.17  Score=40.37  Aligned_cols=35  Identities=29%  Similarity=0.432  Sum_probs=31.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~-V~l~Er~~   76 (455)
                      ....|+|||+|-.|...|..|..+|.+ ++|+-|..
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~   58 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY   58 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcH
Confidence            456799999999999999999999985 99998873

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=89.16  E-value=0.17  Score=39.54  Aligned_cols=31  Identities=26%  Similarity=0.349  Sum_probs=27.7

Q ss_pred             CEEEEC-CCHHHHHHHHHHHhCCC--CEEEEcCC
Q 012845           45 PVLIVG-AGPVGLVLSILLTKLGI--KCSVLEKN   75 (455)
Q Consensus        45 dVvIVG-gG~aGl~~A~~La~~g~--~V~l~Er~   75 (455)
                      +|.||| +|-.|.++|+.|...++  ++.|+|..
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~   35 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP   35 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence            699999 69999999999999986  69999964

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=89.05  E-value=0.14  Score=41.62  Aligned_cols=34  Identities=18%  Similarity=0.224  Sum_probs=29.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~   77 (455)
                      -.|+|+|+|+.|++++..++..|. +|.++|.++.
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~   63 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKD   63 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceeeccCChHH
Confidence            459999999999999999999997 5888887643

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.04  E-value=0.18  Score=45.92  Aligned_cols=38  Identities=16%  Similarity=0.110  Sum_probs=32.8

Q ss_pred             CcccCEEEEC-CCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           41 EAVVPVLIVG-AGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVG-gG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      .++++|+|.| +|..|..++..|.++|++|+++++....
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~   51 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNE   51 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCcc
Confidence            3566799998 7999999999999999999999976543

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=88.52  E-value=0.2  Score=41.24  Aligned_cols=36  Identities=19%  Similarity=0.338  Sum_probs=32.0

Q ss_pred             cccCEEEEC-CCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           42 AVVPVLIVG-AGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        42 ~~~dVvIVG-gG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ....|+|.| +|-.|..+|..|+++|.+|+++.|+..
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~   58 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD   58 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchH
Confidence            457799999 599999999999999999999999853

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.47  E-value=0.29  Score=41.09  Aligned_cols=50  Identities=6%  Similarity=0.035  Sum_probs=37.6

Q ss_pred             hHHHHHHHHHHhcccccccCCCcccccccccccceEEeccEEEEeeecCCc--eEEEEEeccCCcceeEEEEeCEEEe
Q 012845          156 KLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC--INVIASFLKEGKCTERNIQCNILIG  231 (455)
Q Consensus       156 ~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~i~~~~~~--~~v~~~~~~~g~~~~~~~~~d~vV~  231 (455)
                      .|.+.|.+.+++.|+                   +|+++++|++|..++++  +.....   +|.    +++||.||.
T Consensus       237 ~l~~~l~~~~~~~G~-------------------~i~~~~~V~~I~~~~~~~~v~~v~~---~g~----~~~ad~VI~  288 (297)
T d2bcgg1         237 ELPQGFARLSAIYGG-------------------TYMLDTPIDEVLYKKDTGKFEGVKT---KLG----TFKAPLVIA  288 (297)
T ss_dssp             HHHHHHHHHHHHTTC-------------------EEECSCCCCEEEEETTTTEEEEEEE---TTE----EEECSCEEE
T ss_pred             HHHHHHHHHHHhcCC-------------------EEEeCCEeeEEEEECCCCEEEEEEc---CCE----EEECCEEEE
Confidence            467778888888876                   99999999999876443  443344   564    889999886

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=88.38  E-value=0.17  Score=40.92  Aligned_cols=33  Identities=21%  Similarity=0.248  Sum_probs=27.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCE-EEEcCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKC-SVLEKN   75 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V-~l~Er~   75 (455)
                      .-.|+|+|+|+.|++++..++..|.++ .+.|++
T Consensus        29 g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~   62 (174)
T d1f8fa2          29 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIV   62 (174)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESC
T ss_pred             CCEEEEeCCCHHHhhhhhcccccccceeeeeccH
Confidence            457999999999999999888889875 455644

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=88.32  E-value=0.14  Score=44.44  Aligned_cols=33  Identities=21%  Similarity=0.345  Sum_probs=30.5

Q ss_pred             cCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           44 VPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGg-G~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ++|+|.|| |..|..++..|.++|++|..++|..
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            45999998 9999999999999999999999875

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=87.90  E-value=0.25  Score=39.74  Aligned_cols=34  Identities=21%  Similarity=0.310  Sum_probs=28.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~   77 (455)
                      -.|+|+|+|+.|++++..++..|. +|.++++++.
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~   64 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD   64 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CEEEEEecCCccchHHHHHHHHhhchheeecchHH
Confidence            349999999999999999999976 5888887653

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.75  E-value=0.22  Score=39.70  Aligned_cols=34  Identities=21%  Similarity=0.257  Sum_probs=31.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        43 ~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      -..|+|||-|..|-.+|..|+..|.+|+++|..+
T Consensus        24 Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          24 GKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            4579999999999999999999999999999864

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=87.64  E-value=0.23  Score=38.87  Aligned_cols=31  Identities=32%  Similarity=0.532  Sum_probs=25.8

Q ss_pred             CEEEEC-CCHHHHHHHHHHHh-CC--CCEEEEcCC
Q 012845           45 PVLIVG-AGPVGLVLSILLTK-LG--IKCSVLEKN   75 (455)
Q Consensus        45 dVvIVG-gG~aGl~~A~~La~-~g--~~V~l~Er~   75 (455)
                      +|.||| +|-.|.++|+.|+. .+  -++.++|..
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~   36 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc
Confidence            699999 59999999999864 34  579999964

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=87.62  E-value=0.093  Score=40.18  Aligned_cols=37  Identities=16%  Similarity=0.107  Sum_probs=29.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhC-CCC-EEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKL-GIK-CSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~-g~~-V~l~Er~~~~   78 (455)
                      .++.|+|+|||-+|.+++..|.+. |++ |..+|-++..
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k   40 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEK   40 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTT
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHh
Confidence            467999999999999998877544 777 5688866543

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.03  E-value=0.24  Score=40.10  Aligned_cols=34  Identities=18%  Similarity=0.217  Sum_probs=30.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ...+|+|+|+|=++-+++++|++.| +|.|+-|+.
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~   50 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV   50 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhh
Confidence            4568999999999999999998888 899999874

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=86.30  E-value=0.18  Score=39.91  Aligned_cols=26  Identities=31%  Similarity=0.414  Sum_probs=22.6

Q ss_pred             CcccCEEEECC-CHHHHHHHHHHHhCC
Q 012845           41 EAVVPVLIVGA-GPVGLVLSILLTKLG   66 (455)
Q Consensus        41 ~~~~dVvIVGg-G~aGl~~A~~La~~g   66 (455)
                      ....+|.|||| |..|.++|+.|+..+
T Consensus         2 ~~p~KV~IiGA~G~VG~~~a~~l~~~~   28 (154)
T d1y7ta1           2 KAPVRVAVTGAAGQIGYSLLFRIAAGE   28 (154)
T ss_dssp             CCCEEEEESSTTSHHHHHHHHHHHTTT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcc
Confidence            34569999997 999999999999875

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=86.30  E-value=0.3  Score=39.36  Aligned_cols=33  Identities=24%  Similarity=0.325  Sum_probs=28.8

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 012845           45 PVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (455)
Q Consensus        45 dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~~   77 (455)
                      .|+|+|+|..|++++..++..|. +|.+++.++.
T Consensus        31 tVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~   64 (176)
T d2jhfa2          31 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKD   64 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCceEEeecCcHH
Confidence            49999999999999999999985 7888887654

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=85.63  E-value=0.39  Score=38.83  Aligned_cols=35  Identities=20%  Similarity=0.272  Sum_probs=27.1

Q ss_pred             CcccCEEEECC-CHHHHHHHHHHHhCCC-------CEEEEcCC
Q 012845           41 EAVVPVLIVGA-GPVGLVLSILLTKLGI-------KCSVLEKN   75 (455)
Q Consensus        41 ~~~~dVvIVGg-G~aGl~~A~~La~~g~-------~V~l~Er~   75 (455)
                      .+..+|.|+|| |..|.++|+.|++...       .+.++|..
T Consensus        22 k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~   64 (175)
T d7mdha1          22 KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSE   64 (175)
T ss_dssp             CCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCG
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCc
Confidence            45678999996 9999999999998532       45666654

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=85.59  E-value=0.25  Score=39.72  Aligned_cols=33  Identities=27%  Similarity=0.352  Sum_probs=27.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      -.|+|+|+|+.|+.++..++..|. .|.+.|+++
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            469999999999998888887786 567778764

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.05  E-value=0.21  Score=39.61  Aligned_cols=34  Identities=21%  Similarity=0.314  Sum_probs=26.2

Q ss_pred             cccCEEEECC-CHHHHHHHHHHHhCCC-------CEEEEcCC
Q 012845           42 AVVPVLIVGA-GPVGLVLSILLTKLGI-------KCSVLEKN   75 (455)
Q Consensus        42 ~~~dVvIVGg-G~aGl~~A~~La~~g~-------~V~l~Er~   75 (455)
                      ++.+|.|||| |..|.++|+.|+..+.       +..++|.+
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~   43 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDIT   43 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCG
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCc
Confidence            3468999996 9999999999987542       35666654

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=85.04  E-value=0.29  Score=39.46  Aligned_cols=35  Identities=20%  Similarity=0.161  Sum_probs=31.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      ....|+|+|+|=++-+++..|.+.+.+|+|+-|+.
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            45679999999999999999999888999999874

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=84.94  E-value=0.32  Score=42.06  Aligned_cols=36  Identities=17%  Similarity=0.401  Sum_probs=30.1

Q ss_pred             cccCEEEECCCH-HHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           42 AVVPVLIVGAGP-VGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        42 ~~~dVvIVGgG~-aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +...|+|.||+= .|.++|..|+++|.+|.+.+|+..
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   44 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA   44 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            445677778765 789999999999999999999865

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=84.70  E-value=0.28  Score=35.38  Aligned_cols=37  Identities=19%  Similarity=0.230  Sum_probs=31.0

Q ss_pred             CCcccCEEEECCCHHHHHH-HHHHHhCCCCEEEEcCCC
Q 012845           40 NEAVVPVLIVGAGPVGLVL-SILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        40 ~~~~~dVvIVGgG~aGl~~-A~~La~~g~~V~l~Er~~   76 (455)
                      |....+|-+||-|=+|.++ |..|.+.|++|+-.|+..
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            3456789999988888665 999999999999999874

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=84.59  E-value=0.51  Score=42.43  Aligned_cols=36  Identities=19%  Similarity=0.236  Sum_probs=32.0

Q ss_pred             cccCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           42 AVVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        42 ~~~dVvIVGg-G~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ++..|+|+|| |-.|..++..|.++|++|.++=|+..
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~   38 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLK   38 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            4678999996 99999999999999999999987643

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=84.37  E-value=0.33  Score=38.45  Aligned_cols=35  Identities=26%  Similarity=0.293  Sum_probs=32.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~   76 (455)
                      .-..|+|+|-|..|--+|..|+..|.+|+|.|.+|
T Consensus        22 aGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          22 SGKIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             cCCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            34689999999999999999999999999999875

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=84.33  E-value=0.35  Score=38.65  Aligned_cols=33  Identities=18%  Similarity=0.269  Sum_probs=27.8

Q ss_pred             cCEEEECC-CHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           44 VPVLIVGA-GPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        44 ~dVvIVGg-G~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      -.|+|+|+ |+.|++++..++..|. +|.++++++
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             CEEEEEeccccceeeeeecccccccccccccccch
Confidence            46999994 9999999988888885 788999764

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.03  E-value=0.39  Score=44.80  Aligned_cols=35  Identities=29%  Similarity=0.444  Sum_probs=31.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~-~V~l~Er~~   76 (455)
                      .+.+|+|||+|-.|+.+|..|++.|+ +++|+|.+.
T Consensus        36 ~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          36 DTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             HHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             hcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            35789999999999999999999999 799999764

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=83.47  E-value=0.58  Score=37.96  Aligned_cols=37  Identities=19%  Similarity=0.311  Sum_probs=33.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~~   78 (455)
                      ....|.|||.|..|...|..|...|.+|..+++.+..
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~   77 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE   77 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             cCceEEEeccccccccceeeeeccccccccccccccc
Confidence            3467999999999999999999999999999987643

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=82.68  E-value=0.54  Score=42.20  Aligned_cols=35  Identities=23%  Similarity=0.258  Sum_probs=31.7

Q ss_pred             ccCEEEEC-CCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           43 VVPVLIVG-AGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        43 ~~dVvIVG-gG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      +.+|+|.| +|..|..++..|.++|++|.+++|...
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            46899999 689999999999999999999998764

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=81.94  E-value=0.43  Score=39.92  Aligned_cols=36  Identities=19%  Similarity=0.298  Sum_probs=31.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        42 ~~~dVvIVGgG~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      ...+|+|||+|-+|.-+|..|++.+-+++++=+.+.
T Consensus        31 ~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~   66 (235)
T d1w4xa2          31 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH   66 (235)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCCEEEEECCCccHHHHHHHHHhhhccccccccccc
Confidence            467999999999999999999999988777766653

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=80.71  E-value=0.79  Score=39.04  Aligned_cols=32  Identities=19%  Similarity=0.298  Sum_probs=26.1

Q ss_pred             EEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCC
Q 012845           46 VLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKA   77 (455)
Q Consensus        46 VvIVGg-G~aGl~~A~~La~~g~~V~l~Er~~~   77 (455)
                      |+|-|| +=.|.++|..|++.|.+|.+.+++..
T Consensus         4 vlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           4 IVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            355564 56899999999999999999998754

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=80.16  E-value=0.82  Score=38.21  Aligned_cols=38  Identities=24%  Similarity=0.444  Sum_probs=32.1

Q ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCCCC
Q 012845           41 EAVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAF   78 (455)
Q Consensus        41 ~~~~dVvIVGgG~aGl~~A~~La~~g~~-V~l~Er~~~~   78 (455)
                      ..+.+|+|.|+|-||+..|..|.+.+.+ +.++|+.-..
T Consensus        24 l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi   62 (222)
T d1vl6a1          24 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGIL   62 (222)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEEC
T ss_pred             hhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEE
Confidence            3467899999999999999999998875 8899987443