Citrus Sinensis ID: 012874

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450----
MATAVAASSFVSRSYGHEVASGLNSKASQMKFRCMKHSGLRSLNIIDDLQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLVSITIRNYSTLYTFIMT
ccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEccccccccccHHHHHHcccHHHHHHccccEEEEEcccccHHHHccccEEEEEEEccEEEEEEEEEEEEcccEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHcHHcccccccccccccccccEEEEcccHHHHHHHHHHHccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccEEccccHHHHHHHcccccccccccccccccccEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccEEEEEcccccccHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHc
ccEEEEcccEEcccccccccccccccccccccccccccccccHcHHHHHHHHccHHHHHHHHHHcccccccccccccccccccccEEEEEEEEccccccccccHHHHcccHHHHHHcccEEEEEEccccHHHHHccccEEEEEEEcccEEEEEEEEEEEccccEEEEccccHHHHccccccccccccccccccccHHHHHHHHHHHHHHcccEccccccccccccccccEEEEEccHHHHHHHHHHHHHHcccccHHccEEEEEEEEHHHcccccHHHHHHccccHHHHHHHHcHcccccccccccEEHHHHHHEEccEEEEEcccHHHHEEccccccccHHHHHHccccEEEEEccccccccccccccEEEcccHcHHHHHHHHHHHHHHHHHcccccccccEEEEEEEccccccHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHcc
MATAVAASSFVSRSYGHEVASGLNSKASQMKFrcmkhsglrslniIDDLQVKTMASKLATsrqagrngfrsqngpslmIVCGVGLNILFVGtevapwsktgglgdvlgglppalaanghrvmtiaprydqykdawdTDVVIELKVGDKIEKVRFFHchkrgvdrvfvdhPWFLAKVWGktqskiygprtgedyqdnQLRFSLLCQAAleaprilnlnsnkyfsgpygedvVFVANDwhtslipcylktmykpkgmyksaKVVFCIHNIAyqgrfafedfgllnlpaqfkssfdfidgynkpvrgrkinwmkagilesdmvltvsphyaqelvsgedkgveLDNIIRKTGIKGivngmdvqewnpltdkyigvkydastvmdaKPLLKEALQAevglpvdrnipvigfigrleeqkgsDILAAAIPHFIKENVQIIVLVSITIRNYSTLYTFIMT
matavaassfvsrsyghevasglnskaSQMKFRCMKHSGLRSLNIIDDLQVKTMASKLAtsrqagrngfrsqngpSLMIVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHChkrgvdrvfvdhPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQElvsgedkgvelDNIIRKTgikgivngmdvqewNPLTDKYIGVKYDASTVMDAKPLLKEALqaevglpvdrnIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLVSITIRNYSTLYTFIMT
MATAVAASSFVSRSYGHEVASGLNSKASQMKFRCMKHSGLRSLNIIDDLQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTgglgdvlgglppalaangHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLVSITIRNYSTLYTFIMT
*******************************FRCMKHSGLRSLNIIDDLQVK***********************SLMIVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLVSITIRNYSTLYTFI**
***********************************************************************************GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLVSITIRNYSTLYTFIMT
*********FVSRSYGHEVASGLNSKASQMKFRCMKHSGLRSLNIIDDLQVKTMAS**********NGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLVSITIRNYSTLYTFIMT
***A****SFVS*************************SGLRSLN*IDDLQVKTM***L*******************MIVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLVSITIRNYSTLYTFIMT
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATAVAASSFVSRSYGHEVASGLNSKASQMKFRCMKHSGLRSLNIIDDLQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLVSITIRNYSTLYTFIMT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query454 2.2.26 [Sep-21-2011]
Q43784 608 Granule-bound starch synt N/A no 0.944 0.705 0.712 1e-180
O82627 608 Granule-bound starch synt N/A no 0.949 0.708 0.709 1e-178
Q00775 607 Granule-bound starch synt N/A no 0.949 0.710 0.708 1e-177
Q9MAQ0 610 Probable granule-bound st yes no 0.953 0.709 0.679 1e-173
Q42857 608 Granule-bound starch synt N/A no 0.947 0.707 0.696 1e-171
Q43092 603 Granule-bound starch synt N/A no 0.850 0.640 0.731 1e-168
P04713 605 Granule-bound starch synt N/A no 0.872 0.654 0.693 1e-162
Q43134 608 Granule-bound starch synt N/A no 0.856 0.639 0.704 1e-160
P09842 603 Granule-bound starch synt N/A no 0.892 0.671 0.673 1e-160
Q42968 609 Granule-bound starch synt N/A no 0.861 0.642 0.691 1e-158
>sp|Q43784|SSG1_MANES Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Manihot esculenta GN=WAXY PE=2 SV=1 Back     alignment and function desciption
 Score =  632 bits (1629), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 315/442 (71%), Positives = 363/442 (82%), Gaps = 13/442 (2%)

Query: 1   MATAVAASSFVSRSYGHEVASGLNSKASQMKF-----RCMKHSGLRSLNIIDDLQVKTMA 55
           MAT +AA  FVSRS  H     L +KA+ +       + +  +GLRSLN +D LQ+KT  
Sbjct: 1   MATVIAAH-FVSRS-SHLSIHALETKANNLSHTGPWTQTITPNGLRSLNTMDKLQMKTQ- 57

Query: 56  SKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALA 115
           SK      A  NG      P+  I+CG G+N++FVG EV PWSKTGGLGDVLGGLPPA+A
Sbjct: 58  SKAVKKVSATGNG-----RPAAKIICGHGMNLIFVGAEVGPWSKTGGLGDVLGGLPPAMA 112

Query: 116 ANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAK 175
           A GHRVMT++PRYDQYKDAWDT V +E+K+GD+IE VRFFH +KRGVDRVFVDHP FL K
Sbjct: 113 ARGHRVMTVSPRYDQYKDAWDTSVSVEIKIGDRIETVRFFHSYKRGVDRVFVDHPMFLEK 172

Query: 176 VWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVAN 235
           VWGKT SKIYGPR G DYQDNQLRFSLLC AALEAPR+LNLNS+K FSGPYGE+V F+AN
Sbjct: 173 VWGKTGSKIYGPRAGLDYQDNQLRFSLLCLAALEAPRVLNLNSSKNFSGPYGEEVAFIAN 232

Query: 236 DWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFI 295
           DWHT+L+PCYLK +Y+P G+YK AKV FCIHNIAYQGRFAF DF  LNLP +FKSSFDFI
Sbjct: 233 DWHTALLPCYLKAIYQPMGIYKHAKVAFCIHNIAYQGRFAFSDFPRLNLPDKFKSSFDFI 292

Query: 296 DGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVN 355
           DGY KPV+GRKINWMKAGILESD VLTVSP+YAQE++SG ++GVELDN IRKTGI GI+N
Sbjct: 293 DGYEKPVKGRKINWMKAGILESDRVLTVSPYYAQEVISGVERGVELDNFIRKTGIAGIIN 352

Query: 356 GMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQK 415
           GMDVQEWNP+TDKYI + YDA+TVMDAKPLLKEALQAEVGLPVDRN+P+IGFIGRLEEQK
Sbjct: 353 GMDVQEWNPVTDKYIDIHYDATTVMDAKPLLKEALQAEVGLPVDRNVPLIGFIGRLEEQK 412

Query: 416 GSDILAAAIPHFIKENVQIIVL 437
           GSDI  AAI   ++ NVQI++L
Sbjct: 413 GSDIFVAAISQLVEHNVQIVIL 434
Responsible for the synthesis of amylose in reserve starch.
Manihot esculenta (taxid: 3983)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 2EC: 4EC: 2
>sp|O82627|SSG1_ANTMA Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Antirrhinum majus GN=WAXY PE=2 SV=1 Back     alignment and function description
>sp|Q00775|SSG1_SOLTU Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum GN=WAXY PE=1 SV=1 Back     alignment and function description
>sp|Q9MAQ0|SSG1_ARATH Probable granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=WAXY PE=2 SV=1 Back     alignment and function description
>sp|Q42857|SSG1_IPOBA Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Ipomoea batatas GN=WAXY PE=2 SV=2 Back     alignment and function description
>sp|Q43092|SSG1_PEA Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1 Back     alignment and function description
>sp|P04713|SSG1_MAIZE Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Zea mays GN=WAXY PE=3 SV=1 Back     alignment and function description
>sp|Q43134|SSG1_SORBI Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Sorghum bicolor GN=WAXY PE=2 SV=1 Back     alignment and function description
>sp|P09842|SSG1_HORVU Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Hordeum vulgare GN=WAXY PE=1 SV=1 Back     alignment and function description
>sp|Q42968|SSG1_ORYGL Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza glaberrima GN=WAXY PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query454
375151860 611 GBSSII-2 [Citrus sinensis] 0.962 0.715 0.997 0.0
182636946 615 granule bound starch synthase Ib precurs 0.927 0.684 0.766 0.0
375151864 618 GBSSII-2 [Prunus persica] 0.892 0.655 0.783 0.0
223029784 615 granule-bound starch synthase [Nelumbo n 0.955 0.705 0.745 0.0
197725528 615 granule-bound starch synthase [Nelumbo n 0.958 0.707 0.747 0.0
375151862 613 GBSSII-1 [Prunus persica] 0.953 0.706 0.734 0.0
375151858 611 GBSSII-1 [Citrus sinensis] 0.955 0.710 0.734 0.0
225466653 614 PREDICTED: granule-bound starch synthase 0.953 0.705 0.722 0.0
258489621 609 granule-bound starch synthase 1 [Gossypi 0.949 0.707 0.721 0.0
211906516 609 granule bound starch synthase [Gossypium 0.949 0.707 0.721 0.0
>gi|375151860|gb|AFA36446.1| GBSSII-2 [Citrus sinensis] Back     alignment and taxonomy information
 Score =  911 bits (2355), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/437 (99%), Positives = 437/437 (100%)

Query: 1   MATAVAASSFVSRSYGHEVASGLNSKASQMKFRCMKHSGLRSLNIIDDLQVKTMASKLAT 60
           MATAVAASSFVSRSYGHEVASGLNSKASQMKFRCMKHSGLRSLNIID+LQVKTMASKLAT
Sbjct: 1   MATAVAASSFVSRSYGHEVASGLNSKASQMKFRCMKHSGLRSLNIIDELQVKTMASKLAT 60

Query: 61  SRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHR 120
           SRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHR
Sbjct: 61  SRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHR 120

Query: 121 VMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKT 180
           VMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKT
Sbjct: 121 VMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKT 180

Query: 181 QSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTS 240
           QSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTS
Sbjct: 181 QSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTS 240

Query: 241 LIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNK 300
           LIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNK
Sbjct: 241 LIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNK 300

Query: 301 PVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQ 360
           PVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQ
Sbjct: 301 PVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQ 360

Query: 361 EWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDIL 420
           EWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDIL
Sbjct: 361 EWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDIL 420

Query: 421 AAAIPHFIKENVQIIVL 437
           AAAIPHFIKENVQIIVL
Sbjct: 421 AAAIPHFIKENVQIIVL 437

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|182636946|gb|ACB97678.1| granule bound starch synthase Ib precursor [Malus x domestica] gi|357528262|gb|AET80370.1| granule-bound starch synthase GBSS2 [Malus x domestica] Back     alignment and taxonomy information
>gi|375151864|gb|AFA36448.1| GBSSII-2 [Prunus persica] Back     alignment and taxonomy information
>gi|223029784|gb|ACM78591.1| granule-bound starch synthase [Nelumbo nucifera] Back     alignment and taxonomy information
>gi|197725528|gb|ACH72975.1| granule-bound starch synthase [Nelumbo nucifera] Back     alignment and taxonomy information
>gi|375151862|gb|AFA36447.1| GBSSII-1 [Prunus persica] Back     alignment and taxonomy information
>gi|375151858|gb|AFA36445.1| GBSSII-1 [Citrus sinensis] Back     alignment and taxonomy information
>gi|225466653|ref|XP_002273608.1| PREDICTED: granule-bound starch synthase 1, chloroplastic/amyloplastic [Vitis vinifera] gi|296089007|emb|CBI38710.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|258489621|gb|ACV72639.1| granule-bound starch synthase 1 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|211906516|gb|ACJ11751.1| granule bound starch synthase [Gossypium hirsutum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query454
TAIR|locus:2037950 610 GBSS1 "granule bound starch sy 0.953 0.709 0.65 1.7e-153
UNIPROTKB|Q42968 609 WAXY "Granule-bound starch syn 0.852 0.635 0.651 5.1e-138
TAIR|locus:2102102 792 SS2 "starch synthase 2" [Arabi 0.737 0.422 0.392 4.6e-57
TAIR|locus:2169749 652 SS1 "starch synthase 1" [Arabi 0.748 0.521 0.373 7e-54
TIGR_CMR|BA_5120 476 BA_5120 "glycogen synthase" [B 0.440 0.420 0.367 4.4e-34
UNIPROTKB|Q9KRB6 484 glgA "Glycogen synthase" [Vibr 0.497 0.466 0.330 6.5e-30
TIGR_CMR|VC_1726 484 VC_1726 "glycogen synthase" [V 0.497 0.466 0.330 6.5e-30
TIGR_CMR|GSU_1023 501 GSU_1023 "glycogen synthase" [ 0.436 0.395 0.358 7.1e-28
TIGR_CMR|GSU_3257 484 GSU_3257 "glycogen synthase" [ 0.438 0.411 0.336 6e-26
UNIPROTKB|P0A6U8 477 glgA [Escherichia coli K-12 (t 0.513 0.488 0.329 1.1e-23
TAIR|locus:2037950 GBSS1 "granule bound starch synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1497 (532.0 bits), Expect = 1.7e-153, P = 1.7e-153
 Identities = 286/440 (65%), Positives = 345/440 (78%)

Query:     1 MATAVAASSFVSRS--YGHEVASGLNSKAS-QMKFRCMKHSGLRSLNIIDDLQVKTMASK 57
             MAT  A+S+FVSR+  + +  AS  +  A   +K + + H GLRS N++D+LQ ++ A K
Sbjct:     1 MATVTASSNFVSRTSLFNNHGASSCSDVAQITLKGQSLTHCGLRSFNMVDNLQRRSQA-K 59

Query:    58 LATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXX 117
               +++ + R+      G    IVC  G++++F+G EV PWSKT                 
Sbjct:    60 PVSAKSSKRSSKVKTAGK---IVCEKGMSVIFIGAEVGPWSKTGGLGDVLGGLPPALAAR 116

Query:   118 XHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVW 177
              HRVMTI PRYDQYKDAWDT VV+++KVGDK+E VRFFHC+KRGVDRVFVDHP FLAKV 
Sbjct:   117 GHRVMTICPRYDQYKDAWDTCVVVQIKVGDKVENVRFFHCYKRGVDRVFVDHPIFLAKVV 176

Query:   178 GKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDW 237
             GKT SKIYGP TG DY DNQLRFSLLCQAALEAP++LNLNS+KYFSGPYGEDVVFVANDW
Sbjct:   177 GKTGSKIYGPITGVDYNDNQLRFSLLCQAALEAPQVLNLNSSKYFSGPYGEDVVFVANDW 236

Query:   238 HTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDG 297
             HT+L+PCYLK+MY+ +G+Y +AKVVFCIHNIAYQGRFAF+D+ LLNLP  FKSSFDF+DG
Sbjct:   237 HTALLPCYLKSMYQSRGVYMNAKVVFCIHNIAYQGRFAFDDYSLLNLPISFKSSFDFMDG 296

Query:   298 YNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGM 357
             Y KPV+GRKINWMKA ILE+  VLTVSP+YAQEL+SG D+GVEL   +R   + GI+NGM
Sbjct:   297 YEKPVKGRKINWMKAAILEAHRVLTVSPYYAQELISGVDRGVELHKYLRMKTVSGIINGM 356

Query:   358 DVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGS 417
             DVQEWNP TDKYI +KYD +TV DAKPL+KEALQA VGLPVDR++PVIGFIGRLEEQKGS
Sbjct:   357 DVQEWNPSTDKYIDIKYDITTVTDAKPLIKEALQAAVGLPVDRDVPVIGFIGRLEEQKGS 416

Query:   418 DILAAAIPHFIKENVQIIVL 437
             DIL  AI  F+  NVQ+++L
Sbjct:   417 DILVEAISKFMGLNVQMVIL 436
GO:0009011 "starch synthase activity" evidence=IEA
GO:0009058 "biosynthetic process" evidence=IEA
GO:0009250 "glucan biosynthetic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0001666 "response to hypoxia" evidence=RCA
GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA
GO:0019375 "galactolipid biosynthetic process" evidence=RCA
UNIPROTKB|Q42968 WAXY "Granule-bound starch synthase 1, chloroplastic/amyloplastic" [Oryza glaberrima (taxid:4538)] Back     alignment and assigned GO terms
TAIR|locus:2102102 SS2 "starch synthase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169749 SS1 "starch synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5120 BA_5120 "glycogen synthase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KRB6 glgA "Glycogen synthase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1726 VC_1726 "glycogen synthase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1023 GSU_1023 "glycogen synthase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_3257 GSU_3257 "glycogen synthase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|P0A6U8 glgA [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8LL05SSG1B_HORVU2, ., 4, ., 1, ., 2, 4, 20.70640.83700.6725N/Ano
Q43784SSG1_MANES2, ., 4, ., 1, ., 2, 4, 20.71260.94490.7055N/Ano
O82627SSG1_ANTMA2, ., 4, ., 1, ., 2, 10.70900.94930.7088N/Ano
Q43092SSG1_PEA2, ., 4, ., 1, ., 2, 4, 20.73180.85020.6401N/Ano
Q00775SSG1_SOLTU2, ., 4, ., 1, ., 2, 4, 20.70840.94930.7100N/Ano
Q43134SSG1_SORBI2, ., 4, ., 1, ., 2, 4, 20.70430.85680.6398N/Ano
Q9MAQ0SSG1_ARATH2, ., 4, ., 1, ., 2, 4, 20.67950.95370.7098yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00011972001
SubName- Full=Chromosome undetermined scaffold_2674, whole genome shotgun sequence; (614 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00028257001
RecName- Full=Glucose-1-phosphate adenylyltransferase; EC=2.7.7.27;; This protein plays a role [...] (445 aa)
• •  •• 0.527
GSVIVG00029046001
RecName- Full=Glucose-1-phosphate adenylyltransferase; EC=2.7.7.27;; This protein plays a role [...] (509 aa)
• •  •• 0.499
GSVIVG00007848001
SubName- Full=Chromosome undetermined scaffold_1099, whole genome shotgun sequence; (319 aa)
  •     0.489
GSVIVG00014579001
RecName- Full=Glucose-1-phosphate adenylyltransferase; EC=2.7.7.27;; This protein plays a role [...] (519 aa)
• •  •• 0.469
GSVIVG00019926001
RecName- Full=Glucose-1-phosphate adenylyltransferase; EC=2.7.7.27;; This protein plays a role [...] (520 aa)
• •  •• 0.449
GSVIVG00036349001
RecName- Full=Glucose-1-phosphate adenylyltransferase; EC=2.7.7.27;; This protein plays a role [...] (527 aa)
• •   • 0.424
GSVIVG00015571001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (755 aa)
•     • 0.422
GSVIVG00025477001
RecName- Full=Galactose-1-phosphate uridylyltransferase; EC=2.7.7.12; (332 aa)
•       0.408

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query454
cd03791 476 cd03791, GT1_Glycogen_synthase_DULL1_like, This fa 1e-127
TIGR02095 473 TIGR02095, glgA, glycogen/starch synthase, ADP-glu 1e-123
PRK00654 466 PRK00654, glgA, glycogen synthase; Provisional 2e-94
pfam08323234 pfam08323, Glyco_transf_5, Starch synthase catalyt 2e-83
COG0297 487 COG0297, GlgA, Glycogen synthase [Carbohydrate tra 2e-74
PRK14099 485 PRK14099, PRK14099, glycogen synthase; Provisional 1e-54
PRK14098 489 PRK14098, PRK14098, glycogen synthase; Provisional 4e-39
PLN02939 977 PLN02939, PLN02939, transferase, transferring glyc 4e-38
PLN02316 1036 PLN02316, PLN02316, synthase/transferase 1e-26
cd03801 374 cd03801, GT1_YqgM_like, This family is most closel 7e-09
cd03798 377 cd03798, GT1_wlbH_like, This family is most closel 0.004
>gnl|CDD|99965 cd03791, GT1_Glycogen_synthase_DULL1_like, This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information 
 Score =  375 bits (966), Expect = e-127
 Identities = 138/360 (38%), Positives = 196/360 (54%), Gaps = 33/360 (9%)

Query: 86  NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDT----DVVI 141
            +LFV +EVAP++KTGGLGDV+G LP ALA  GH V  I P+Y +  D          + 
Sbjct: 1   KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLLVLRLF 60

Query: 142 ELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFS 201
            + VG + E V  F     GV   F+D+P +  +             +G DY+DN  RF+
Sbjct: 61  GVPVGGRPEYVGVFELPVDGVPVYFLDNPDYFDRPGLY-------DDSGYDYEDNAERFA 113

Query: 202 LLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKV 261
           L  +AALE  R L             +  +   +DWHT L+P  LK  Y     +K+ K 
Sbjct: 114 LFSRAALELLRRLG-----------WKPDIIHCHDWHTGLVPALLKEKYADPF-FKNIKT 161

Query: 262 VFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVL 321
           VF IHN+AYQG F  E    L LP +     D ++ Y +      +N++KAGI+ +D V 
Sbjct: 162 VFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGLEFYGQ------VNFLKAGIVYADAVT 215

Query: 322 TVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTV 379
           TVSP YA+E+++ E  G  LD ++  R   + GI+NG+D   WNP TD ++   Y A   
Sbjct: 216 TVSPTYAREILTPEF-GEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSA-DD 273

Query: 380 MDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLVS 439
           ++ K   K ALQ E+GLPVD + P+ GF+GRL EQKG D+L  A+P  ++   Q+++L S
Sbjct: 274 LEGKAENKAALQEELGLPVDPDAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGS 333

Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. Length = 476
>gnl|CDD|233724 TIGR02095, glgA, glycogen/starch synthase, ADP-glucose type Back     alignment and domain information
>gnl|CDD|234809 PRK00654, glgA, glycogen synthase; Provisional Back     alignment and domain information
>gnl|CDD|219794 pfam08323, Glyco_transf_5, Starch synthase catalytic domain Back     alignment and domain information
>gnl|CDD|223374 COG0297, GlgA, Glycogen synthase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|237610 PRK14099, PRK14099, glycogen synthase; Provisional Back     alignment and domain information
>gnl|CDD|172588 PRK14098, PRK14098, glycogen synthase; Provisional Back     alignment and domain information
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups Back     alignment and domain information
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase Back     alignment and domain information
>gnl|CDD|99974 cd03801, GT1_YqgM_like, This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known Back     alignment and domain information
>gnl|CDD|99971 cd03798, GT1_wlbH_like, This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 454
PLN02939 977 transferase, transferring glycosyl groups 100.0
PRK14099 485 glycogen synthase; Provisional 100.0
PRK14098 489 glycogen synthase; Provisional 100.0
TIGR02095 473 glgA glycogen/starch synthases, ADP-glucose type. 100.0
PRK00654 466 glgA glycogen synthase; Provisional 100.0
PLN02316 1036 synthase/transferase 100.0
cd03791 476 GT1_Glycogen_synthase_DULL1_like This family is mo 100.0
COG0297 487 GlgA Glycogen synthase [Carbohydrate transport and 100.0
PF08323245 Glyco_transf_5: Starch synthase catalytic domain; 100.0
TIGR02094 601 more_P_ylases alpha-glucan phosphorylases. This fa 99.98
cd04299 778 GT1_Glycogen_Phosphorylase_like This family is mos 99.96
PRK10307 412 putative glycosyl transferase; Provisional 99.9
TIGR03449 405 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-ino 99.88
TIGR02472 439 sucr_P_syn_N sucrose-phosphate synthase, putative, 99.88
TIGR02149 388 glgA_Coryne glycogen synthase, Corynebacterium fam 99.88
TIGR02468 1050 sucrsPsyn_pln sucrose phosphate synthase/possible 99.86
cd03796 398 GT1_PIG-A_like This family is most closely related 99.86
PLN02871 465 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase 99.84
TIGR02470 784 sucr_synth sucrose synthase. This model represents 99.84
cd04962 371 GT1_like_5 This family is most closely related to 99.84
cd03819 355 GT1_WavL_like This family is most closely related 99.8
PLN02846 462 digalactosyldiacylglycerol synthase 99.8
cd04955 363 GT1_like_6 This family is most closely related to 99.79
cd03800 398 GT1_Sucrose_synthase This family is most closely r 99.79
PRK10125 405 putative glycosyl transferase; Provisional 99.79
cd04951 360 GT1_WbdM_like This family is most closely related 99.79
PRK15484 380 lipopolysaccharide 1,2-N-acetylglucosaminetransfer 99.78
cd03805 392 GT1_ALG2_like This family is most closely related 99.78
cd03802 335 GT1_AviGT4_like This family is most closely relate 99.78
cd03793 590 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, 99.77
cd03812 358 GT1_CapH_like This family is most closely related 99.77
KOG1111 426 consensus N-acetylglucosaminyltransferase complex, 99.77
cd03818 396 GT1_ExpC_like This family is most closely related 99.76
PLN00142 815 sucrose synthase 99.76
cd03816 415 GT1_ALG1_like This family is most closely related 99.75
cd03792 372 GT1_Trehalose_phosphorylase Trehalose phosphorylas 99.74
TIGR03088 374 stp2 sugar transferase, PEP-CTERM/EpsH1 system ass 99.74
cd03807 365 GT1_WbnK_like This family is most closely related 99.74
cd03794 394 GT1_wbuB_like This family is most closely related 99.73
PRK15427 406 colanic acid biosynthesis glycosyltransferase WcaL 99.72
cd03821 375 GT1_Bme6_like This family is most closely related 99.72
cd03795 357 GT1_like_4 This family is most closely related to 99.71
cd03817 374 GT1_UGDG_like This family is most closely related 99.71
cd03823 359 GT1_ExpE7_like This family is most closely related 99.69
cd03825 365 GT1_wcfI_like This family is most closely related 99.67
cd03799 355 GT1_amsK_like This is a family of GT1 glycosyltran 99.66
PRK09922 359 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D 99.66
PRK15179 694 Vi polysaccharide biosynthesis protein TviE; Provi 99.66
cd03814 364 GT1_like_2 This family is most closely related to 99.66
cd03809 365 GT1_mtfB_like This family is most closely related 99.65
cd05844 367 GT1_like_7 Glycosyltransferases catalyze the trans 99.65
cd03801 374 GT1_YqgM_like This family is most closely related 99.64
cd03822 366 GT1_ecORF704_like This family is most closely rela 99.62
PRK00726 357 murG undecaprenyldiphospho-muramoylpentapeptide be 99.61
cd03811 353 GT1_WabH_like This family is most closely related 99.59
PLN02275371 transferase, transferring glycosyl groups 99.59
cd03808 359 GT1_cap1E_like This family is most closely related 99.59
cd03798 377 GT1_wlbH_like This family is most closely related 99.58
cd03820 348 GT1_amsD_like This family is most closely related 99.58
cd03806 419 GT1_ALG11_like This family is most closely related 99.57
PF13439177 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 99.54
PF13579160 Glyco_trans_4_4: Glycosyl transferase 4-like domai 99.53
cd03785 350 GT1_MurG MurG is an N-acetylglucosaminyltransferas 99.51
TIGR01133 348 murG undecaprenyldiphospho-muramoylpentapeptide be 99.5
TIGR03087 397 stp1 sugar transferase, PEP-CTERM/EpsH1 system ass 99.49
PLN02501 794 digalactosyldiacylglycerol synthase 99.49
PRK15490 578 Vi polysaccharide biosynthesis protein TviE; Provi 99.46
cd03813 475 GT1_like_3 This family is most closely related to 99.45
PLN02949 463 transferase, transferring glycosyl groups 99.42
cd03804 351 GT1_wbaZ_like This family is most closely related 99.32
PF05693 633 Glycogen_syn: Glycogen synthase; InterPro: IPR0086 99.3
cd03788 460 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a 99.29
PRK13609 380 diacylglycerol glucosyltransferase; Provisional 99.25
TIGR02400 456 trehalose_OtsA alpha,alpha-trehalose-phosphate syn 99.21
PF09314185 DUF1972: Domain of unknown function (DUF1972); Int 99.15
TIGR02918 500 accessory Sec system glycosylation protein GtfA. M 99.06
cd04946 407 GT1_AmsK_like This family is most closely related 99.01
PHA01630 331 putative group 1 glycosyl transferase 98.97
PLN02605 382 monogalactosyldiacylglycerol synthase 98.95
PRK14501 726 putative bifunctional trehalose-6-phosphate syntha 98.93
PRK05749 425 3-deoxy-D-manno-octulosonic-acid transferase; Revi 98.92
PHA01633 335 putative glycosyl transferase group 1 98.92
PLN03063 797 alpha,alpha-trehalose-phosphate synthase (UDP-form 98.9
TIGR02398 487 gluc_glyc_Psyn glucosylglycerol-phosphate synthase 98.85
cd04949 372 GT1_gtfA_like This family is most closely related 98.83
PRK13608 391 diacylglycerol glucosyltransferase; Provisional 98.78
cd01635229 Glycosyltransferase_GTB_type Glycosyltransferases 98.71
cd03786 363 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of th 98.71
PF13477139 Glyco_trans_4_2: Glycosyl transferase 4-like 98.68
PRK00025 380 lpxB lipid-A-disaccharide synthase; Reviewed 98.6
TIGR00236 365 wecB UDP-N-acetylglucosamine 2-epimerase. Epimeras 98.56
cd04950 373 GT1_like_1 Glycosyltransferases catalyze the trans 98.51
PRK09814 333 beta-1,6-galactofuranosyltransferase; Provisional 98.29
PLN03064 934 alpha,alpha-trehalose-phosphate synthase (UDP-form 98.14
TIGR00215 385 lpxB lipid-A-disaccharide synthase. Lipid-A precur 98.12
COG0058 750 GlgP Glucan phosphorylase [Carbohydrate transport 98.08
PRK14986 815 glycogen phosphorylase; Provisional 98.04
cd04300 797 GT1_Glycogen_Phosphorylase This is a family of oli 97.96
PRK14985 798 maltodextrin phosphorylase; Provisional 97.72
PRK12446352 undecaprenyldiphospho-muramoylpentapeptide beta-N- 97.72
TIGR02093 794 P_ylase glycogen/starch/alpha-glucan phosphorylase 97.61
KOG3742 692 consensus Glycogen synthase [Carbohydrate transpor 97.47
PRK10117 474 trehalose-6-phosphate synthase; Provisional 97.45
PF00982 474 Glyco_transf_20: Glycosyltransferase family 20; In 97.45
PLN02205 854 alpha,alpha-trehalose-phosphate synthase [UDP-form 97.43
PF12000171 Glyco_trans_4_3: Gkycosyl transferase family 4 gro 97.34
PF00534 172 Glycos_transf_1: Glycosyl transferases group 1; In 97.24
KOG0853 495 consensus Glycosyltransferase [Cell wall/membrane/ 97.05
COG0380 486 OtsA Trehalose-6-phosphate synthase [Carbohydrate 96.94
PF04007335 DUF354: Protein of unknown function (DUF354); Inte 96.89
PF00343 713 Phosphorylase: Carbohydrate phosphorylase; InterPr 96.86
KOG1387 465 consensus Glycosyltransferase [Cell wall/membrane/ 96.2
COG0438 381 RfaG Glycosyltransferase [Cell envelope biogenesis 95.9
KOG2941 444 consensus Beta-1,4-mannosyltransferase [Posttransl 95.89
COG0707357 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosami 95.78
PF00862550 Sucrose_synth: Sucrose synthase; InterPro: IPR0003 95.74
PF13692135 Glyco_trans_1_4: Glycosyl transferases group 1; PD 95.11
PF11997268 DUF3492: Domain of unknown function (DUF3492); Int 93.71
COG1817346 Uncharacterized protein conserved in archaea [Func 91.68
PF0828890 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IP 89.91
TIGR03568365 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, 89.24
PF06925169 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) sy 86.57
PF01975196 SurE: Survival protein SurE; InterPro: IPR002828 T 83.52
PF02350 346 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; 81.77
PF13528318 Glyco_trans_1_3: Glycosyl transferase family 1 81.58
TIGR00661321 MJ1255 conserved hypothetical protein. This model 80.68
>PLN02939 transferase, transferring glycosyl groups Back     alignment and domain information 
Probab=100.00  E-value=4.4e-54  Score=471.82  Aligned_cols=331  Identities=33%  Similarity=0.539  Sum_probs=271.2

Q ss_pred             CCCceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCC--c---ceEEEEEeCCeeeEEEEEE
Q 012874           82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWD--T---DVVIELKVGDKIEKVRFFH  156 (454)
Q Consensus        82 ~~~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d--~---~~~~~v~~~~~~~~v~~~~  156 (454)
                      .++|||+||++|+.||.++||+|++++.|+++|+++||+|+||+|.|+.....+.  .   ...+.+.+++....++++.
T Consensus       479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~  558 (977)
T PLN02939        479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWT  558 (977)
T ss_pred             CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEEEEE
Confidence            3579999999999999999999999999999999999999999999987652211  1   1122222333333467788


Q ss_pred             EeeCCceEEEecC--cc-hhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEE
Q 012874          157 CHKRGVDRVFVDH--PW-FLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFV  233 (454)
Q Consensus       157 ~~~~GV~~~~i~~--p~-~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH  233 (454)
                      ...+||++|||++  |. |+.+      ..+|+      |+||..||.+||+++++++..++          ++|| |||
T Consensus       559 ~~~~GV~vyfId~~~~~~fF~R------~~iYg------~~Dn~~RF~~FsrAaLe~~~~~~----------~~PD-IIH  615 (977)
T PLN02939        559 GTVEGLPVYFIEPQHPSKFFWR------AQYYG------EHDDFKRFSYFSRAALELLYQSG----------KKPD-IIH  615 (977)
T ss_pred             EEECCeeEEEEecCCchhccCC------CCCCC------CccHHHHHHHHHHHHHHHHHhcC----------CCCC-EEE
Confidence            8889999999985  32 5544      36886      67999999999999999998764          4899 999


Q ss_pred             eCCCchhHHHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHH
Q 012874          234 ANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAG  313 (454)
Q Consensus       234 ~h~w~ta~~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~  313 (454)
                      ||||||+++|++++..|...+ +.++|+|+|+||+.|||.++...+..+|+|...+..   .++++.. +..++|++|.+
T Consensus       616 ~HDW~TaLV~pll~~~y~~~~-~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~---~d~le~~-~~~~iN~LK~G  690 (977)
T PLN02939        616 CHDWQTAFVAPLYWDLYAPKG-FNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDR---PDRMQDN-AHGRINVVKGA  690 (977)
T ss_pred             ECCccHHHHHHHHHHHHhhcc-CCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccC---hhhhhhc-cCCchHHHHHH
Confidence            999999998666555554444 367899999999999999987777778888665421   1222111 23578999999


Q ss_pred             hhhCCceeccCHHHHHHHHcCCCCCccchhhhc--cCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHH
Q 012874          314 ILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQ  391 (454)
Q Consensus       314 i~~ad~VitVS~~~a~~l~~~~~~g~~l~~~l~--~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr  391 (454)
                      +.+||+|+|||+.|++++.+  .+|.+++.+++  +.++.+|+||||++.|+|.+|++|+.+|+++++ ++|..+|.++|
T Consensus       691 Iv~AD~VtTVSptYA~EI~t--e~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl-~GK~~nK~aLR  767 (977)
T PLN02939        691 IVYSNIVTTVSPTYAQEVRS--EGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDL-QGKAANKAALR  767 (977)
T ss_pred             HHhCCeeEeeeHHHHHHHHH--HhccchHHHhccccCCceEEecceehhhcCCccccccccccChhhh-hhhhhhhHHHH
Confidence            99999999999999999985  57778877765  479999999999999999999999999999986 69999999999


Q ss_pred             HHhCCCCC-CCCcEEEEEcCCccccCHHHHHHHHhhcccCCcEEEEEecCCcc
Q 012874          392 AEVGLPVD-RNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLVSITIR  443 (454)
Q Consensus       392 ~~~Gl~~~-~~~~lIlfvGRL~~qKG~d~LieA~~~l~~~~v~lvIvG~G~~~  443 (454)
                      +++|++.+ ++.|+|+|||||.++||+++|++|+..+.+.+++|+|+|+|+..
T Consensus       768 kelGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~~dvqLVIvGdGp~~  820 (977)
T PLN02939        768 KQLGLSSADASQPLVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVP  820 (977)
T ss_pred             HHhCCCcccccceEEEEeecCCcccChHHHHHHHHHHhhcCCEEEEEeCCCcH
Confidence            99999853 57899999999999999999999999887778999999999753

>PRK14099 glycogen synthase; Provisional Back     alignment and domain information
>PRK14098 glycogen synthase; Provisional Back     alignment and domain information
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type Back     alignment and domain information
>PRK00654 glgA glycogen synthase; Provisional Back     alignment and domain information
>PLN02316 synthase/transferase Back     alignment and domain information
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2 Back     alignment and domain information
>TIGR02094 more_P_ylases alpha-glucan phosphorylases Back     alignment and domain information
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences Back     alignment and domain information
>PRK10307 putative glycosyl transferase; Provisional Back     alignment and domain information
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase Back     alignment and domain information
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain Back     alignment and domain information
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family Back     alignment and domain information
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant Back     alignment and domain information
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase Back     alignment and domain information
>TIGR02470 sucr_synth sucrose synthase Back     alignment and domain information
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PLN02846 digalactosyldiacylglycerol synthase Back     alignment and domain information
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK10125 putative glycosyl transferase; Provisional Back     alignment and domain information
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli Back     alignment and domain information
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional Back     alignment and domain information
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis Back     alignment and domain information
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism] Back     alignment and domain information
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PLN00142 sucrose synthase Back     alignment and domain information
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose Back     alignment and domain information
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated Back     alignment and domain information
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional Back     alignment and domain information
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria Back     alignment and domain information
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds Back     alignment and domain information
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known Back     alignment and domain information
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional Back     alignment and domain information
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PLN02275 transferase, transferring glycosyl groups Back     alignment and domain information
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A Back     alignment and domain information
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A Back     alignment and domain information
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis Back     alignment and domain information
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase Back     alignment and domain information
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated Back     alignment and domain information
>PLN02501 digalactosyldiacylglycerol synthase Back     alignment and domain information
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PLN02949 transferase, transferring glycosyl groups Back     alignment and domain information
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3 Back     alignment and domain information
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor Back     alignment and domain information
>PRK13609 diacylglycerol glucosyltransferase; Provisional Back     alignment and domain information
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming] Back     alignment and domain information
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases Back     alignment and domain information
>TIGR02918 accessory Sec system glycosylation protein GtfA Back     alignment and domain information
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PHA01630 putative group 1 glycosyl transferase Back     alignment and domain information
>PLN02605 monogalactosyldiacylglycerol synthase Back     alignment and domain information
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional Back     alignment and domain information
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed Back     alignment and domain information
>PHA01633 putative glycosyl transferase group 1 Back     alignment and domain information
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional Back     alignment and domain information
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase Back     alignment and domain information
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding Back     alignment and domain information
>PRK13608 diacylglycerol glucosyltransferase; Provisional Back     alignment and domain information
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds Back     alignment and domain information
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc) Back     alignment and domain information
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like Back     alignment and domain information
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed Back     alignment and domain information
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase Back     alignment and domain information
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds Back     alignment and domain information
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional Back     alignment and domain information
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional Back     alignment and domain information
>TIGR00215 lpxB lipid-A-disaccharide synthase Back     alignment and domain information
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK14986 glycogen phosphorylase; Provisional Back     alignment and domain information
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases Back     alignment and domain information
>PRK14985 maltodextrin phosphorylase; Provisional Back     alignment and domain information
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed Back     alignment and domain information
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases Back     alignment and domain information
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10117 trehalose-6-phosphate synthase; Provisional Back     alignment and domain information
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming] Back     alignment and domain information
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria Back     alignment and domain information
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length Back     alignment and domain information
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2 Back     alignment and domain information
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A Back     alignment and domain information
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>COG1817 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins Back     alignment and domain information
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing Back     alignment and domain information
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [] Back     alignment and domain information
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family Back     alignment and domain information
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5 Back     alignment and domain information
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1 Back     alignment and domain information
>TIGR00661 MJ1255 conserved hypothetical protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query454
3vue_A 536 Crystal Structure Of Rice Granule Bound Starch Synt 1e-150
1rzu_A 485 Crystal Structure Of The Glycogen Synthase From A. 6e-28
3d1j_A 477 Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408 7e-28
2qzs_A 485 Crystal Structure Of Wild-Type E.Coli Gs In Complex 8e-28
3cop_A 485 Crystal Structure Of E.Coli Gs Mutant E377a In Comp 8e-28
1rzv_A 485 Crystal Structure Of The Glycogen Synthase From Agr 7e-26
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain Length = 536 Back     alignment and structure 
Iteration: 1

 Score =  529 bits (1363), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 244/353 (69%), Positives = 285/353 (80%)
Query: 85  LNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELK 144
           +N++FVG E+APWSKT                  HRVM I+PRYDQYKDAWDT VV E+K
Sbjct: 10  MNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIK 69
Query: 145 VGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLC 204
           V D+ E+VRFFHC+KRGVDRVF+DHP FL KVWGKT  KIYGP TG DY+DNQ+RFSLLC
Sbjct: 70  VADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLC 129
Query: 205 QAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFC 264
           QAALEAPRILNLN+N YF G YGEDVVFV NDWHT  +  YLK  Y+P G+Y++AKV FC
Sbjct: 130 QAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFC 189
Query: 265 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324
           IHNI+YQGRFAFED+  LNL  +F+SSFDFIDGY+ PV GRKINWMKAGILE+D VLTVS
Sbjct: 190 IHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVS 249
Query: 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKP 384
           P+YA+EL+SG  +G ELDNI+R TGI GIVNGMDV EW+P  DKYI  KYDA+T ++AK 
Sbjct: 250 PYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKA 309
Query: 385 LLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVL 437
           L KEALQAE GLPVDR IP+I FIGRLEEQKG D++AAAIP  ++E+VQI++L
Sbjct: 310 LNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLL 362
>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp Length = 485 Back     alignment and structure
>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s) Length = 477 Back     alignment and structure
>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) Length = 485 Back     alignment and structure
>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex With Adp And Acceptor Analogue Heppso Length = 485 Back     alignment and structure
>pdb|1RZV|A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) Length = 485 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query454
1rzu_A 485 Glycogen synthase 1; glycosyl-transferase, GT-B fo 1e-143
2qzs_A 485 Glycogen synthase; glycosyl-transferase, GT-B fold 1e-142
3fro_A 439 GLGA glycogen synthase; glycosyltransferase family 2e-88
2bfw_A 200 GLGA glycogen synthase; glycosyltransferase family 4e-23
3nb0_A 725 Glycogen [starch] synthase isoform 2; glycogen syn 4e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
2iw1_A 374 Lipopolysaccharide core biosynthesis protein RFAG; 9e-08
2r60_A 499 Glycosyl transferase, group 1; rossmann-fold; 1.80 1e-07
2jjm_A 394 Glycosyl transferase, group 1 family protein; anth 2e-07
3okp_A 394 GDP-mannose-dependent alpha-(1-6)-phosphatidylino 4e-07
3c48_A 438 Predicted glycosyltransferases; retaining glycosyl 5e-07
2x6q_A 416 Trehalose-synthase TRET; biosynthetic protein; 2.2 6e-05
3s28_A 816 Sucrose synthase 1; glycosyltransferase, sucrose m 1e-04
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A Length = 485 Back     alignment and structure
 Score =  418 bits (1077), Expect = e-143
 Identities = 111/355 (31%), Positives = 169/355 (47%), Gaps = 31/355 (8%)

Query: 85  LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELK 144
           +N+L V +E+ P  KTGGL DV+G LP AL A+G R  T+ P Y   K A    V     
Sbjct: 1   MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEF 60

Query: 145 VGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLC 204
                EK          +D + +D P +  +  G      Y  +TG+DY DN  RF+ L 
Sbjct: 61  TDLLGEKADLLEVQHERLDLLILDAPAYYERSGG-----PYLGQTGKDYPDNWKRFAALS 115

Query: 205 QAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFC 264
            AA      +           +  D+V  A+DW  ++ P Y++              +  
Sbjct: 116 LAAARIGAGVLPG--------WRPDMVH-AHDWQAAMTPVYMRYAE-----TPEIPSLLT 161

Query: 265 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324
           IHNIA+QG+F    F  L LPA      + I+ YN       ++++K G+  +  + TVS
Sbjct: 162 IHNIAFQGQFGANIFSKLALPAHA-FGMEGIEYYN------DVSFLKGGLQTATALSTVS 214

Query: 325 PHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDA 382
           P YA+E+++ E  G+ L+ +I  R   + GIVNG+D   WNP TD  I   Y A+  +  
Sbjct: 215 PSYAEEILTAE-FGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAAN-LKN 272

Query: 383 KPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVL 437
           + L K+A+     +  D   P+   I RL  QKG D++A A+   +    +++VL
Sbjct: 273 RALNKKAVAEHFRIDDD-GSPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVL 326
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A Length = 485 Back     alignment and structure
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} PDB: 2bis_A* 3l01_A* Length = 439 Back     alignment and structure
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8 Length = 200 Back     alignment and structure
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A* Length = 725 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A* Length = 374 Back     alignment and structure
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A* Length = 499 Back     alignment and structure
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A* Length = 394 Back     alignment and structure
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A* Length = 394 Back     alignment and structure
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* Length = 438 Back     alignment and structure
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A* Length = 416 Back     alignment and structure
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A* Length = 816 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query454
3vue_A 536 GBSS-I, granule-bound starch synthase 1, chloropla 100.0
2qzs_A 485 Glycogen synthase; glycosyl-transferase, GT-B fold 100.0
1rzu_A 485 Glycogen synthase 1; glycosyl-transferase, GT-B fo 100.0
3fro_A 439 GLGA glycogen synthase; glycosyltransferase family 99.97
3c48_A 438 Predicted glycosyltransferases; retaining glycosyl 99.91
2r60_A 499 Glycosyl transferase, group 1; rossmann-fold; 1.80 99.9
3nb0_A 725 Glycogen [starch] synthase isoform 2; glycogen syn 99.9
3okp_A 394 GDP-mannose-dependent alpha-(1-6)-phosphatidylino 99.88
2iw1_A 374 Lipopolysaccharide core biosynthesis protein RFAG; 99.86
3s28_A 816 Sucrose synthase 1; glycosyltransferase, sucrose m 99.85
2jjm_A 394 Glycosyl transferase, group 1 family protein; anth 99.85
2c4m_A 796 Glycogen phosphorylase; allosteric control, phosph 99.84
1l5w_A 796 Maltodextrin phosphorylase; enzymatic catalysis, s 99.84
2x6q_A 416 Trehalose-synthase TRET; biosynthetic protein; 2.2 99.81
2gek_A 406 Phosphatidylinositol mannosyltransferase (PIMA); G 99.8
2iuy_A 342 Avigt4, glycosyltransferase; antibiotics, family G 99.79
3oy2_A 413 Glycosyltransferase B736L; rossmann fold, GDP-mann 99.75
2gj4_A 824 Glycogen phosphorylase, muscle form; transferase; 99.71
1f0k_A 364 MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pe 99.62
2hy7_A 406 Glucuronosyltransferase GUMK; glycosyltransferases 99.54
2x0d_A 413 WSAF; GT4 family, transferase; HET: MSE; 2.28A {Ge 99.5
1uqt_A 482 Alpha, alpha-trehalose-phosphate synthase; glycosy 99.38
3beo_A 375 UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, a 99.32
1vgv_A 384 UDP-N-acetylglucosamine 2-epimerase; structural ge 99.31
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 99.28
3t5t_A 496 Putative glycosyltransferase; GTB fold, pseudoglyc 99.17
1v4v_A 376 UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, t 98.95
2bfw_A 200 GLGA glycogen synthase; glycosyltransferase family 98.84
2xci_A 374 KDO-transferase, 3-deoxy-D-manno-2-octulosonic aci 98.53
3otg_A412 CALG1; calicheamicin, TDP, structural genomics, PS 98.52
3s2u_A 365 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape 98.27
3rhz_A 339 GTF3, nucleotide sugar synthetase-like protein; gl 98.17
3dzc_A 396 UDP-N-acetylglucosamine 2-epimerase; structural ge 98.17
4fzr_A398 SSFS6; structural genomics, PSI-biology, protein s 97.94
3oti_A398 CALG3; calicheamicin, TDP, structural genomics, PS 97.88
2iyf_A430 OLED, oleandomycin glycosyltransferase; antibiotic 97.83
3ia7_A402 CALG4; glycosysltransferase, calicheamicin, enediy 97.77
3ot5_A 403 UDP-N-acetylglucosamine 2-epimerase; structural ge 97.65
1ygp_A 879 Yeast glycogen phosphorylase; phosphorylated form, 97.6
4hwg_A 385 UDP-N-acetylglucosamine 2-epimerase; ssgcid, struc 97.44
2f9f_A 177 First mannosyl transferase (WBAZ-1); alpha-beta pr 97.29
3tsa_A391 SPNG, NDP-rhamnosyltransferase; glycosyltransferas 96.94
3rsc_A415 CALG2; TDP, enediyne, structural genomics, PSI-2, 96.62
3h4t_A404 Glycosyltransferase GTFA, glycosyltransferase; van 96.38
2p6p_A384 Glycosyl transferase; X-RAY-diffraction,urdamycina 95.53
4amg_A400 Snogd; transferase, polyketide biosynthesis, GT1 f 91.91
2iya_A424 OLEI, oleandomycin glycosyltransferase; carbohydra 83.1
2yjn_A441 ERYCIII, glycosyltransferase; transferase, cytochr 83.06
1rrv_A416 Glycosyltransferase GTFD; GT-B, glycosyltransferas 80.59
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A* Back     alignment and structure
Probab=100.00  E-value=5.7e-60  Score=505.93  Aligned_cols=369  Identities=71%  Similarity=1.204  Sum_probs=309.7

Q ss_pred             CCCceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCCeeeEEEEEEEeeCC
Q 012874           82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRG  161 (454)
Q Consensus        82 ~~~MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~~~~~v~~~~~~~~G  161 (454)
                      .+.||||||++|++|+.++||+|+++.+|+++|+++||+|+||+|.|+++.+.++......+.++++.+.+++++...+|
T Consensus         7 ~~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   86 (536)
T 3vue_A            7 HHHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRG   86 (536)
T ss_dssp             -CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCSCCTTCEEEEEEEEEEETTEEEEEEEEECEETT
T ss_pred             CCCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEecCchhhhhhcccceEEEEEecCceEEEEEEEEEECC
Confidence            34799999999999999999999999999999999999999999999998887777777788888888889999999999


Q ss_pred             ceEEEecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhH
Q 012874          162 VDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSL  241 (454)
Q Consensus       162 V~~~~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~  241 (454)
                      |++|+|++|.|+.+.+++++..+|+++.|.+|.||..||.+||++++++++.+.....+++.+.+.+|+|+|+||||+++
T Consensus        87 v~~y~id~~~~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~~~~~~ddIiH~hDW~t~l  166 (536)
T 3vue_A           87 VDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGP  166 (536)
T ss_dssp             EEEEEEECTTTTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCCSCCCSCEEEEEESGGGST
T ss_pred             ceEEEecChhhhccccccCCCcccCCCccCccchHHHHHHHHHHHHHHHHHHhccccchhhhccCCCCEEEEECcchHHH
Confidence            99999999999988888888889999899999999999999999999999998877778888877777699999999999


Q ss_pred             HHHHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCcee
Q 012874          242 IPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVL  321 (454)
Q Consensus       242 ~~~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~Vi  321 (454)
                      +|.+++..+...+.+.++|+|+|+||+.+||.++...+..++++.......++.+.+..+.....+|+++.++..||+|+
T Consensus       167 ~~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~k~~i~~ad~v~  246 (536)
T 3vue_A          167 LASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVL  246 (536)
T ss_dssp             HHHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCEEEEEHHHHHHHHCSEEE
T ss_pred             HHHHHHHhhhhhhhhcccceeeeecCcccccccchhhhhhcCCchhhcchhhhhhcccccccccchhHHHHHHHhccEEE
Confidence            99999998877777789999999999999999988887777777665443333344443444566899999999999999


Q ss_pred             ccCHHHHHHHHcCCCCCccchhhhccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCC
Q 012874          322 TVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRN  401 (454)
Q Consensus       322 tVS~~~a~~l~~~~~~g~~l~~~l~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~  401 (454)
                      |||+.|++++.+...+|.+++..+++.++.+|+||||++.|+|.+|++++.+|+..+..++|..+|+++++++|++.|++
T Consensus       247 tVS~~~a~ei~~~~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~~l~~~~gl~~d~~  326 (536)
T 3vue_A          247 TVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGLPVDRK  326 (536)
T ss_dssp             ESCHHHHHHHHTTCCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHHHHHHHTTSCCCTT
T ss_pred             EcCHHHhhhhhcccccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHHHHHHHhcCCCCCCC
Confidence            99999999998644456666666778899999999999999999999999999988777889999999999999999999


Q ss_pred             CcEEEEEcCCccccCHHHHHHHHhhcccCCcEEEEEecCCccchHHHHH
Q 012874          402 IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLVSITIRNYSTLYT  450 (454)
Q Consensus       402 ~~lIlfvGRL~~qKG~d~LieA~~~l~~~~v~lvIvG~G~~~~~~~l~~  450 (454)
                      .|+|+|+|||+++||++.|++|++++.+++.+|+|+|.|+......+..
T Consensus       327 ~p~i~~vgRl~~~Kg~~~li~a~~~l~~~~~~l~l~G~G~~~~~~~~~~  375 (536)
T 3vue_A          327 IPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKS  375 (536)
T ss_dssp             SCEEEEECCBSGGGCHHHHHHHHHHHTTSSCEEEEECCBCHHHHHHHHH
T ss_pred             CcEEEEEeeccccCChHHHHHHHHHhHhhCCeEEEEeccCchHHHHHHH
Confidence            9999999999999999999999999988899999999998765555544
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A Back     alignment and structure
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A Back     alignment and structure
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A* Back     alignment and structure
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* Back     alignment and structure
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A* Back     alignment and structure
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A* Back     alignment and structure
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A* Back     alignment and structure
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A* Back     alignment and structure
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A* Back     alignment and structure
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A* Back     alignment and structure
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae} Back     alignment and structure
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A* Back     alignment and structure
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A* Back     alignment and structure
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A* Back     alignment and structure
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A* Back     alignment and structure
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A* Back     alignment and structure
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ... Back     alignment and structure
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A* Back     alignment and structure
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A* Back     alignment and structure
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A* Back     alignment and structure
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A* Back     alignment and structure
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A Back     alignment and structure
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A* Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A* Back     alignment and structure
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3 Back     alignment and structure
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8 Back     alignment and structure
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A* Back     alignment and structure
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* Back     alignment and structure
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa} Back     alignment and structure
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A* Back     alignment and structure
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae} Back     alignment and structure
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* Back     alignment and structure
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A* Back     alignment and structure
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} Back     alignment and structure
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes} Back     alignment and structure
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii} Back     alignment and structure
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8 Back     alignment and structure
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A* Back     alignment and structure
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A* Back     alignment and structure
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A* Back     alignment and structure
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae} Back     alignment and structure
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A* Back     alignment and structure
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea} Back     alignment and structure
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 454
d1rzua_ 477 c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacte 3e-63
d2bisa1 437 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyro 5e-20
d2bfwa1 196 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Py 0.001
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} Length = 477 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Agrobacterium tumefaciens [TaxId: 358]

 Score =  210 bits (534), Expect = 3e-63
 Identities = 110/366 (30%), Positives = 166/366 (45%), Gaps = 31/366 (8%)

Query: 86  NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKV 145
           N+L V +E+ P  KTGGL DV+G LP AL A+G R  T+ P Y   K A    V      
Sbjct: 2   NVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEFT 61

Query: 146 GDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQ 205
               EK          +D + +D P +  +  G      Y  +TG+DY DN  RF+ L  
Sbjct: 62  DLLGEKADLLEVQHERLDLLILDAPAYYERSGG-----PYLGQTGKDYPDNWKRFAALSL 116

Query: 206 AALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCI 265
           AA      +          P     +  A+DW  ++ P Y++    P+        +  I
Sbjct: 117 AAARIGAGVL---------PGWRPDMVHAHDWQAAMTPVYMRYAETPE-----IPSLLTI 162

Query: 266 HNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 325
           HNIA+QG+F    F  L LPA          G         ++++K G+  +  + TVSP
Sbjct: 163 HNIAFQGQFGANIFSKLALPAHA-------FGMEGIEYYNDVSFLKGGLQTATALSTVSP 215

Query: 326 HYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAK 383
            YA+E+++ E  G+ L+ +I  R   + GIVNG+D   WNP TD  I   Y A   +  +
Sbjct: 216 SYAEEILTAE-FGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSA-ANLKNR 273

Query: 384 PLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLVSITIR 443
            L K+A+     +  D   P+   I RL  QKG D++A A+   +    +++VL +  + 
Sbjct: 274 ALNKKAVAEHFRID-DDGSPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDVA 332

Query: 444 NYSTLY 449
               L 
Sbjct: 333 LEGALL 338
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Length = 437 Back     information, alignment and structure
>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Length = 196 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query454
d1rzua_ 477 Glycogen synthase 1, GlgA {Agrobacterium tumefacie 100.0
d2bisa1 437 Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI 99.96
d2iw1a1 370 Lipopolysaccharide core biosynthesis protein RfaG 99.72
d1uqta_ 456 Trehalose-6-phosphate synthase, OtsA {Escherichia 98.93
d2bfwa1 196 Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI 98.78
d1l5wa_ 796 Maltodextrin phosphorylase (MALP) {Escherichia col 98.59
d2gj4a1 824 Glycogen phosphorylase {Rabbit (Oryctolagus cunicu 97.38
d1ygpa_ 876 Glycogen phosphorylase {Baker's yeast (Saccharomyc 97.3
d2f9fa1 166 First mannosyl transferase WbaZ {Archaeoglobus ful 97.09
d1pn3a_391 TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi 95.26
d1rrva_401 TDP-vancosaminyltransferase GftD {Amycolatopsis or 94.63
d1f0ka_351 Peptidoglycan biosynthesis glycosyltransferase Mur 92.85
d1iira_401 UDP-glucosyltransferase GtfB {Amycolatopsis orient 87.56
d1jaya_212 Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae 86.52
d1ks9a2167 Ketopantoate reductase PanE {Escherichia coli [Tax 81.09
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=100.00  E-value=4.8e-42  Score=357.27  Aligned_cols=336  Identities=32%  Similarity=0.503  Sum_probs=259.8

Q ss_pred             ceEEEEecccCCCCCCCcHhHHHhhhhHHHHHCCCeEEEEEecCCcccccCCcceEEEEEeCC-eeeEEEEEEEeeCCce
Q 012874           85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGD-KIEKVRFFHCHKRGVD  163 (454)
Q Consensus        85 MkIl~vs~e~~P~~~~GGlg~~v~~La~aL~~~GheV~Vi~p~y~~~~~~~d~~~~~~v~~~~-~~~~v~~~~~~~~GV~  163 (454)
                      |||+||++||+|+.++||+|+++.+|+++|+++||+|+||+|.|+.++..++.... .+...+ ....+++++...+|++
T Consensus         1 M~i~~v~~e~~P~~~~GGl~~vv~~La~~L~~~Gh~V~Vi~P~y~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~   79 (477)
T d1rzua_           1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVK-CFEFTDLLGEKADLLEVQHERLD   79 (477)
T ss_dssp             CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHHHHHHCCSCEE-EEEESCSSSCCEEEEEEEETTEE
T ss_pred             CEEEEEEEeeecccccCcHHHHHHHHHHHHHHcCCeEEEEecCCcchhhhcccceE-EEEEeccCCceEEEEEEEECCee
Confidence            99999999999998899999999999999999999999999999877665443321 111111 0112556677789999


Q ss_pred             EEEecCcchhhhhhcCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCEEEEeCCCchhHHH
Q 012874          164 RVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIP  243 (454)
Q Consensus       164 ~~~i~~p~~~~k~w~~~~~~~y~~~~g~~~~d~~~r~~~~~~a~~~~ir~l~~~~~~~~~~~~~pD~VIH~h~w~ta~~~  243 (454)
                      +|++++|.++.+.+     .+|....+.+|+++..++..+++++.++++.+..        .++|| |||+|+|++++++
T Consensus        80 ~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~pD-IvH~h~~~~~l~~  145 (477)
T d1rzua_          80 LLILDAPAYYERSG-----GPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLP--------GWRPD-MVHAHDWQAAMTP  145 (477)
T ss_dssp             EEEEECHHHHCSSS-----CSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSS--------SCCCS-EEEEEHHHHTTHH
T ss_pred             EEEecChhhcccCC-----CcccCcccccccccHHHHHHHHHHHHhhhhhccc--------CCCCC-EEEecchhHHHHH
Confidence            99999998876532     4666677888999999999999998888776432        36899 9999999999988


Q ss_pred             HHHHHhccCCCCCCCCeEEEEEeCCcccCCCCccccccCCCCcccccccccccCCCCCcccchHHHHHHHhhhCCceecc
Q 012874          244 CYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTV  323 (454)
Q Consensus       244 ~~l~~~~~~~~~~~~~pvV~TiH~~~~~g~~~~~~~~~l~lp~~~~~~~~~~~~~~k~~~~~~~~~~k~~i~~ad~VitV  323 (454)
                      .+++...     ..++|+|+|+|+..++..++...+..++.+...+..    .+.   .....+++++.++..+|++++|
T Consensus       146 ~~~~~~~-----~~~ip~V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~ad~~~~v  213 (477)
T d1rzua_         146 VYMRYAE-----TPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGM----EGI---EYYNDVSFLKGGLQTATALSTV  213 (477)
T ss_dssp             HHHHHSS-----SCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSST----TTT---EETTEEEHHHHHHHHCSEEEES
T ss_pred             HHHHHhh-----CCCCCEEEEEecccccccCCHHHHHHhhcchhhccc----ccc---cccchhHHHHHHHHhhhhhhhc
Confidence            8777542     257999999999988877777666666655443321    010   0112345678888999999999


Q ss_pred             CHHHHHHHHcCCCCCccchhhh--ccCCeEEEcCCCcCCCCCCCcccccccccCccccccchHHHHHHHHHHhCCCCCCC
Q 012874          324 SPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRN  401 (454)
Q Consensus       324 S~~~a~~l~~~~~~g~~l~~~l--~~~~i~vIpNGiD~~~f~p~~~~~~~~~~~~~~~~~~k~~~k~~lr~~~Gl~~~~~  401 (454)
                      |+.+++++.. ..++.+.+.+.  +..++.+|+||+|.+.|+|..++.++.+++.+.. ..+...+++++.+.+++. ++
T Consensus       214 s~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~p~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~  290 (477)
T d1rzua_         214 SPSYAEEILT-AEFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANL-KNRALNKKAVAEHFRIDD-DG  290 (477)
T ss_dssp             CHHHHHHTTS-HHHHTTCHHHHHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBC-TTHHHHHHHHHHHHTCCC-SS
T ss_pred             cHHHHHHHHH-HhcCcchhhhhhhccccEEEEECCcchhhccccccccccccchhhhH-HHhhhhHHHHHHhccccc-CC
Confidence            9999998764 22333333332  2468999999999999999999999888876653 456677888999999984 57


Q ss_pred             CcEEEEEcCCccccCHHHHHHHHhhcccCCcEEEEEecCCccchHHHHH
Q 012874          402 IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLVSITIRNYSTLYT  450 (454)
Q Consensus       402 ~~lIlfvGRL~~qKG~d~LieA~~~l~~~~v~lvIvG~G~~~~~~~l~~  450 (454)
                      .++|+|+||++++||+++|++|++++.+.+++++++|.|+..+..++..
T Consensus       291 ~~~i~~vgrl~~~KG~~~Ll~a~~~~~~~~~~l~~~G~G~~~~~~~~~~  339 (477)
T d1rzua_         291 SPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDVALEGALLA  339 (477)
T ss_dssp             SCEEEEESCBSTTTTHHHHHTTHHHHHHTTCEEEEEECBCHHHHHHHHH
T ss_pred             ccEEEEEeeeeecCCcHHHHHHHHHHHhhCCeEEEEecCCchHHHHHHH
Confidence            8999999999999999999999999988899999999998765555443
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure