Citrus Sinensis ID: 012875

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450----
MLLLSATAVTPKTPLSKDHTCCLLFCPNYHPKFCASLNPKPLTTSPKSLSSNGTSLRHVTRTLSNDDEPPAAGSPMVSSASAVASAIRRTSTSPIEFLQTIETDQKRCNLVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRKTVQCF
ccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccHHHEEEcccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEEEccccccccEEEEEEEEccccccccccHHcccccccccHHHHHHHHHcccccccccccEEEccccccccEEEEEcccccHHHHcccccccccccccccccccccccccccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cEEEEEEEEcccccccccccccEEEcccccccccccccccccccccHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccEEccEEEEEEEEccccccccEEEEEccccccHHHHHHHHHHHHHHEEEcccccEEEEEcccccEEEEEEEEEccccEEEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHEccHHHHHHHccccccccHHHccccccccccccccccccccccccccccccccccccccccEcccccccccccccccc
mlllsatavtpktplskdhtccllfcpnyhpkfcaslnpkplttspkslssngtslRHVTrtlsnddeppaagspmvsSASAVASAIrrtstspieFLQTIETDQKrcnlvlpspdfQRLCVEQLHLFrrivdpdavlsvyvrpagsyvmdrLELRRvvsypgvnaTDIVVLVGNFNMPAGLRAAEAALSSqqvqvvpeqravvfpmvkhpfVVGFLVAelplmelqmcgteepdaaigfqsseevyafppsfdteshaiesfdhermRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMnnsayshpesirsqlsnnfsrensgnklqnsckplsldtpakdiempmpplalaplkqngirktvqcf
mlllsatavtpktplskdhTCCLLFCPNYHPKFCASLNPKPLTTSPKSLSSNGTSLRHVTRTLSNDDEPPAAGSPMVSSASAVASAIRRTSTSPIEFLQTIETDQKRCNLVLPSPDFQRLCVEQLHLFrrivdpdavlSVYVRpagsyvmdrleLRRVVSYPGVNATDIVVLVGNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPlalaplkqngirktvqcF
MLLLSATAVTPKTPLSKDHTCCLLFCPNYHPKFCASLNPKPLTTSPKSLSSNGTSLRHVTRTLSNDDEPpaagspmvssasavasairrtstsPIEFLQTIETDQKRCNLVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEmpmpplalaplKQNGIRKTVQCF
****************KDHTCCLLFCPNYHPKFCASL*********************************************************IEFLQTIETDQKRCNLVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFD***HAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQ***W********LVEQIRG*LSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNE**************************************************************************
****************KDHTCCLLFCPNYHPKFCASLN********************************************VAS****************************SPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFNM*A****************VPEQRAVVFPMVKHPFVVG********************************AFPPSFDTESH*********MRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLS**************DIMVQGDRLRGTLQELQDAVFLTKANIVRY********************************************LDTPAKDIEMPMPPLALAPLKQNGIRKTVQCF
MLLLSATAVTPKTPLSKDHTCCLLFCPNYHPKFCASLNPKPLT*************RHVTRTLSND**********************RTSTSPIEFLQTIETDQKRCNLVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFNMPAGLRAA**********VVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMN**********RSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRKTVQCF
MLLLSATAVTPKTPLSKDHTCCLLFCPNYHPKFCASLNPKPLTTSP*******************************************TSTSPIEFLQTIETDQKRCNLVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEE********************************ERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNN****************************************DIEMPMPPLALAPLKQNGIRKTVQCF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLLLSATAVTPKTPLSKDHTCCLLFCPNYHPKFCASLNPKPLTTSPKSLSSNGTSLRHVTRTLSNDDEPPAAGSPMVSSASAVASAIRRTSTSPIEFLQTIETDQKRCNLVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRKTVQCF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query454
255578347 710 ATP binding protein, putative [Ricinus c 0.867 0.554 0.697 1e-145
225424657 627 PREDICTED: uncharacterized protein LOC10 0.949 0.687 0.620 1e-144
449434987 627 PREDICTED: uncharacterized protein LOC10 0.841 0.609 0.599 1e-129
42572021445 chloroplast sensor kinase [Arabidopsis t 0.911 0.930 0.578 1e-126
147860581 608 hypothetical protein VITISV_010592 [Viti 0.878 0.656 0.570 1e-124
18408874 611 chloroplast sensor kinase [Arabidopsis t 0.898 0.667 0.579 1e-124
297838533 610 hypothetical protein ARALYDRAFT_894541 [ 0.841 0.626 0.608 1e-123
217074886458 unknown [Medicago truncatula] 0.808 0.801 0.594 1e-117
356511068 612 PREDICTED: uncharacterized protein LOC10 0.812 0.602 0.615 1e-115
224110864473 predicted protein [Populus trichocarpa] 0.647 0.621 0.677 1e-110
>gi|255578347|ref|XP_002530040.1| ATP binding protein, putative [Ricinus communis] gi|223530456|gb|EEF32340.1| ATP binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 286/410 (69%), Positives = 326/410 (79%), Gaps = 16/410 (3%)

Query: 51  SNGTSLRH-VTRTLSNDDEPPAAGSP-MVSSASAVASAIRRTSTSPIEFLQTIETDQKRC 108
           +N +SL H VTRTL N  EP  +  P M+SSASAVASAIR TS SPIEF+Q +E   K  
Sbjct: 130 NNTSSLLHRVTRTLPNG-EPELSSPPEMLSSASAVASAIRNTSNSPIEFVQKMEKSDK-S 187

Query: 109 NLVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGV-NAT 167
            LVLPS DF+RLC+EQL LFRRIVDPDA+LSVYVRPAGSYVMDRLELRRV SYPG+ +A+
Sbjct: 188 KLVLPSLDFRRLCIEQLDLFRRIVDPDAILSVYVRPAGSYVMDRLELRRVTSYPGIISAS 247

Query: 168 DIVVLVGNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMEL- 226
           D+V+LVG FN+P GLRAAEAAL+SQQV  VP+ RAVVFPMVKHPFVVGFLVAELP MEL 
Sbjct: 248 DVVILVGTFNIPTGLRAAEAALASQQVNFVPDHRAVVFPMVKHPFVVGFLVAELPTMELV 307

Query: 227 ------QMCGTEEPDAAIGFQSSEEVYAFPPSFDT-ESHAIESFDHERMRVYKFSADQRL 279
                 Q  G E  +  + FQS EE Y  P S D  +S  I++ + E  R+Y FSA+QRL
Sbjct: 308 PSYENVQTKGHE--NDLVPFQSPEEAYPLPSSPDNNKSWTIQTLNDESFRMYNFSAEQRL 365

Query: 280 NAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKR 339
           NAINI RSLAMAYVMDQK+MLLQQSSWQNN RMSNLVEQIRGPLSSIQTLSKMLS H+KR
Sbjct: 366 NAINISRSLAMAYVMDQKAMLLQQSSWQNNVRMSNLVEQIRGPLSSIQTLSKMLSTHLKR 425

Query: 340 SEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRS 399
           SEISYDIVEDIMVQGDRLR TLQELQDAV LTKANI+RYNEE L++++NS Y H ES+ S
Sbjct: 426 SEISYDIVEDIMVQGDRLRDTLQELQDAVHLTKANIMRYNEEALQRIHNSNYHHHESLGS 485

Query: 400 QLSNNFSRE-NSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIR 448
            LS+N  R+ +  N L NS KP SL+ P  D+EMPMPP+ALAPL+Q GIR
Sbjct: 486 HLSDNIPRDADDSNNLHNSGKPHSLNVPLDDLEMPMPPMALAPLQQYGIR 535

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225424657|ref|XP_002282396.1| PREDICTED: uncharacterized protein LOC100249068 [Vitis vinifera] gi|296081359|emb|CBI16792.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449434987|ref|XP_004135277.1| PREDICTED: uncharacterized protein LOC101223159 [Cucumis sativus] gi|449520695|ref|XP_004167369.1| PREDICTED: uncharacterized LOC101223159 [Cucumis sativus] Back     alignment and taxonomy information
>gi|42572021|ref|NP_974101.1| chloroplast sensor kinase [Arabidopsis thaliana] gi|332196583|gb|AEE34704.1| chloroplast sensor kinase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|147860581|emb|CAN81865.1| hypothetical protein VITISV_010592 [Vitis vinifera] Back     alignment and taxonomy information
>gi|18408874|ref|NP_564908.1| chloroplast sensor kinase [Arabidopsis thaliana] gi|332196584|gb|AEE34705.1| chloroplast sensor kinase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297838533|ref|XP_002887148.1| hypothetical protein ARALYDRAFT_894541 [Arabidopsis lyrata subsp. lyrata] gi|297332989|gb|EFH63407.1| hypothetical protein ARALYDRAFT_894541 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|217074886|gb|ACJ85803.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356511068|ref|XP_003524253.1| PREDICTED: uncharacterized protein LOC100792515 [Glycine max] Back     alignment and taxonomy information
>gi|224110864|ref|XP_002315662.1| predicted protein [Populus trichocarpa] gi|222864702|gb|EEF01833.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query454
TAIR|locus:2008525 611 CSK "chloroplast sensor kinase 0.850 0.631 0.548 4.7e-103
TAIR|locus:2008525 CSK "chloroplast sensor kinase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1021 (364.5 bits), Expect = 4.7e-103, P = 4.7e-103
 Identities = 230/419 (54%), Positives = 288/419 (68%)

Query:    27 PNYHPKFCASL-NPKP-------LTTSPKSLSSNGTS-----LRHVTRTLSNDDEPXXXX 73
             PN H  F  S+ NP+P       L  S  S SS+ +S     LR+V  T+SN++      
Sbjct:    16 PNLH--FSNSIPNPRPSNPSLKLLNASSSSSSSSSSSIFTRGLRYVNHTVSNEESEPGGG 73

Query:    74 XXXXXXXXXXXXXXXXXXXXPIEFLQTIETDQKRCNLVLPSPDFQRLCVEQLHLFRRIVD 133
                                 P+EF Q IE D  +  ++LPSPDFQRLC+EQL LFR+IVD
Sbjct:    74 ETMVASASAIASAIRGASTTPVEFTQMIEKDHLKTKIILPSPDFQRLCLEQLDLFRQIVD 133

Query:   134 PDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFNMPAGLRAAEAALSSQQ 193
             P+AVLS+YVRPAGSYVMDRLELRRV  YP VNA D+V+LVGNF +PAGLRAAEA+LSSQQ
Sbjct:   134 PNAVLSIYVRPAGSYVMDRLELRRVTCYPSVNAGDVVILVGNFGIPAGLRAAEASLSSQQ 193

Query:   194 VQVVPEQRAVVFPMVKHPFVVGFLVAELPLM---ELQMCGTEEPDAAIGFQSSEEVYAFP 250
             V++V + RA VFPMVKHPFVVGFLVAELP+    E +    E+P     F S EE YA P
Sbjct:   194 VELVSKHRAAVFPMVKHPFVVGFLVAELPVEAEEEEEEEEEEKPHGVNQFLSPEEAYALP 253

Query:   251 PSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNA 310
              S +T+S  ++      ++V  F+ +QR  AINI R+LAMAYVMDQK+MLLQQSSWQNN 
Sbjct:   254 ASANTKSPRVKL---PSVKV--FTEEQRSYAINISRTLAMAYVMDQKTMLLQQSSWQNNV 308

Query:   311 RMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFL 370
             RMS LVEQIRGPLS+++TLSKMLS H KR++IS+DIVED++VQGD+++ TL+ELQDAV L
Sbjct:   309 RMSKLVEQIRGPLSTMRTLSKMLSTHTKRNQISHDIVEDLIVQGDQIKDTLEELQDAVHL 368

Query:   371 TKANIVRYNEETLKKMNN-------SAYSHPESIR-SQLSNNFSRENSGNKLQNSCKPL 421
             TKANIVR+NEE LKK+N        S Y H + I  SQ+S+  +R + G+ L +S  P+
Sbjct:   369 TKANIVRHNEEALKKINKTHNETRRSKYEHKDPIDGSQISS--TRLSLGSGLDDSEMPM 425


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.132   0.379    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      454       419   0.00082  118 3  11 22  0.38    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  246 KB (2133 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  36.57u 0.17s 36.74t   Elapsed:  00:00:01
  Total cpu time:  36.57u 0.17s 36.74t   Elapsed:  00:00:01
  Start:  Tue May 21 01:37:38 2013   End:  Tue May 21 01:37:39 2013
GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0007165 "signal transduction" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016020 "membrane" evidence=IEA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0010468 "regulation of gene expression" evidence=IMP
GO:0016301 "kinase activity" evidence=IDA
GO:0046777 "protein autophosphorylation" evidence=RCA;IDA
GO:0080005 "photosystem stoichiometry adjustment" evidence=IMP
GO:0009637 "response to blue light" evidence=RCA
GO:0009965 "leaf morphogenesis" evidence=RCA
GO:0010155 "regulation of proton transport" evidence=RCA
GO:0030154 "cell differentiation" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
CSK
CSK (CHLOROPLAST SENSOR KINASE); ATP binding / kinase; Encodes a chloroplast sensor kinase (CSK) that shares common ancestors with cyanobacterial histidine sensor kinases. CSK is synthesised in the cytosol and imported into the chloroplast as a protein precusor. CSK is autophosphorylated and required for control of transcription of chloroplast genes by the redox state of an electron carrier connecting photosystems I and II. (611 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT3G26580
unknown protein; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast thylakoid mem [...] (350 aa)
      • 0.919
AT2G23070
casein kinase II alpha chain, putative; casein kinase II alpha chain, putative; FUNCTIONS IN- p [...] (432 aa)
      • 0.869
STN7
STN7 (Stt7 homolog STN7); kinase/ protein kinase; STN7 protein kinase; required for state trans [...] (562 aa)
   •  • 0.827
AT5G08650
GTP-binding protein LepA, putative; GTP-binding protein LepA, putative; FUNCTIONS IN- GTP bindi [...] (681 aa)
   •    0.726
NDF1
NDF1 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1); encodes a novel subunit of the chloroplast NAD(P)H [...] (461 aa)
   •  • 0.705
AT1G54350
ABC transporter family protein; ABC transporter family protein; FUNCTIONS IN- ATPase activity, [...] (706 aa)
   •    0.702
AT1G29700
unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (350 aa)
   •    0.690
SIGA
SIGA (SIGMA FACTOR A); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription f [...] (502 aa)
   •  • 0.676
AT5G35170
adenylate kinase family protein; adenylate kinase family protein; FUNCTIONS IN- nucleobase, nuc [...] (588 aa)
   •    0.673
CHUP1
CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1); actin binding protein required for normal chloroplas [...] (1004 aa)
   •  • 0.659

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 454
PF0051268 HisKA: His Kinase A (phospho-acceptor) domain; Int 98.98
PRK10490895 sensor protein KdpD; Provisional 98.66
COG3852363 NtrB Signal transduction histidine kinase, nitroge 98.58
smart0038866 HisKA His Kinase A (phosphoacceptor) domain. Dimer 98.55
PRK13837 828 two-component VirA-like sensor kinase; Provisional 98.51
cd0008265 HisKA Histidine Kinase A (dimerization/phosphoacce 98.48
PRK10364457 sensor protein ZraS; Provisional 98.36
PRK09303380 adaptive-response sensory kinase; Validated 98.34
TIGR02916679 PEP_his_kin putative PEP-CTERM system histidine ki 98.29
COG2205890 KdpD Osmosensitive K+ channel histidine kinase [Si 98.21
PRK11006430 phoR phosphate regulon sensor protein; Provisional 98.17
PRK10618 894 phosphotransfer intermediate protein in two-compon 98.01
PRK09959 1197 hybrid sensory histidine kinase in two-component r 97.98
PRK11073348 glnL nitrogen regulation protein NR(II); Provision 97.94
PRK10841 924 hybrid sensory kinase in two-component regulatory 97.87
PRK11107 919 hybrid sensory histidine kinase BarA; Provisional 97.86
TIGR02956 968 TMAO_torS TMAO reductase sytem sensor TorS. This p 97.81
PRK15347 921 two component system sensor kinase SsrA; Provision 97.81
PRK10815485 sensor protein PhoQ; Provisional 97.79
PRK11466 914 hybrid sensory histidine kinase TorS; Provisional 97.78
PRK10755356 sensor protein BasS/PmrB; Provisional 97.78
PRK10337449 sensor protein QseC; Provisional 97.73
PRK10604433 sensor protein RstB; Provisional 97.66
TIGR01386457 cztS_silS_copS heavy metal sensor kinase. Members 97.66
PRK11360607 sensory histidine kinase AtoS; Provisional 97.64
PRK11091 779 aerobic respiration control sensor protein ArcB; P 97.64
PRK09467435 envZ osmolarity sensor protein; Provisional 97.64
PRK09835482 sensor kinase CusS; Provisional 97.62
PRK09470461 cpxA two-component sensor protein; Provisional 97.46
TIGR02966333 phoR_proteo phosphate regulon sensor kinase PhoR. 97.42
COG5002459 VicK Signal transduction histidine kinase [Signal 97.35
PRK13560807 hypothetical protein; Provisional 97.34
COG5000712 NtrY Signal transduction histidine kinase involved 97.32
PRK10549466 signal transduction histidine-protein kinase BaeS; 97.24
PRK11644495 sensory histidine kinase UhpB; Provisional 97.19
COG4251750 Bacteriophytochrome (light-regulated signal transd 97.01
PRK11100475 sensory histidine kinase CreC; Provisional 96.97
PRK13559361 hypothetical protein; Provisional 96.87
TIGR03785703 marine_sort_HK proteobacterial dedicated sortase s 96.79
PRK13557 540 histidine kinase; Provisional 96.73
TIGR02938494 nifL_nitrog nitrogen fixation negative regulator N 96.14
COG0642336 BaeS Signal transduction histidine kinase [Signal 95.69
COG4191603 Signal transduction histidine kinase regulating C4 94.85
PF13492129 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_ 94.32
PRK11086542 sensory histidine kinase DcuS; Provisional 94.08
PRK10600569 nitrate/nitrite sensor protein NarX; Provisional 93.47
TIGR01817 534 nifA Nif-specific regulatory protein. This model r 90.99
PRK15053545 dpiB sensor histidine kinase DpiB; Provisional 90.28
smart00065149 GAF Domain present in phytochromes and cGMP-specif 87.55
PRK10935565 nitrate/nitrite sensor protein NarQ; Provisional 80.58
PF01590154 GAF: GAF domain; InterPro: IPR003018 This domain i 80.32
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information 
Probab=98.98  E-value=1.3e-09  Score=83.29  Aligned_cols=64  Identities=19%  Similarity=0.307  Sum_probs=55.6

Q ss_pred             HhhHHHHHHHHHhhhhhHHHHHHHHHhh-hcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012875          308 NNARMSNLVEQIRGPLSSIQTLSKMLSL-HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLT  371 (454)
Q Consensus       308 q~~~la~L~HQiRNPLTAIRTfAkLLlk-RL~pde~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~  371 (454)
                      +++++++++|||||||++|+++.++|.. .-.+++.-+++++.|..+.+|+.+++.++.++.+..
T Consensus         2 ~~~~~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~~   66 (68)
T PF00512_consen    2 KGEFLASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFSRIE   66 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4789999999999999999999999999 333334458999999999999999999999997754

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] Back     alignment and domain information
>smart00388 HisKA His Kinase A (phosphoacceptor) domain Back     alignment and domain information
>PRK13837 two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase Back     alignment and domain information
>PRK10364 sensor protein ZraS; Provisional Back     alignment and domain information
>PRK09303 adaptive-response sensory kinase; Validated Back     alignment and domain information
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK11006 phoR phosphate regulon sensor protein; Provisional Back     alignment and domain information
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional Back     alignment and domain information
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS Back     alignment and domain information
>PRK15347 two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>PRK10815 sensor protein PhoQ; Provisional Back     alignment and domain information
>PRK11466 hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>PRK10755 sensor protein BasS/PmrB; Provisional Back     alignment and domain information
>PRK10337 sensor protein QseC; Provisional Back     alignment and domain information
>PRK10604 sensor protein RstB; Provisional Back     alignment and domain information
>TIGR01386 cztS_silS_copS heavy metal sensor kinase Back     alignment and domain information
>PRK11360 sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>PRK09467 envZ osmolarity sensor protein; Provisional Back     alignment and domain information
>PRK09835 sensor kinase CusS; Provisional Back     alignment and domain information
>PRK09470 cpxA two-component sensor protein; Provisional Back     alignment and domain information
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR Back     alignment and domain information
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK13560 hypothetical protein; Provisional Back     alignment and domain information
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] Back     alignment and domain information
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>PRK11644 sensory histidine kinase UhpB; Provisional Back     alignment and domain information
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] Back     alignment and domain information
>PRK11100 sensory histidine kinase CreC; Provisional Back     alignment and domain information
>PRK13559 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase Back     alignment and domain information
>PRK13557 histidine kinase; Provisional Back     alignment and domain information
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL Back     alignment and domain information
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A Back     alignment and domain information
>PRK11086 sensory histidine kinase DcuS; Provisional Back     alignment and domain information
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional Back     alignment and domain information
>TIGR01817 nifA Nif-specific regulatory protein Back     alignment and domain information
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional Back     alignment and domain information
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional Back     alignment and domain information
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query454
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 51.0 bits (121), Expect = 6e-07
 Identities = 55/454 (12%), Positives = 135/454 (29%), Gaps = 112/454 (24%)

Query: 13  TPLSKDHTCCLLFCPNYHPKFCASLNPKPLTTSPKSLSSNGTSLRHVTRTLSNDDEPPAA 72
               +           +   F  + + K +   PKS+ S    + H+           A 
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK-EEIDHIIM------SKDA- 60

Query: 73  GSPMVSSASAVASAIRRTSTSPIE-FLQTI-ETD--------QKRCNLVLPSPDFQRL-- 120
               VS    +   +       ++ F++ +   +        +       PS   +    
Sbjct: 61  ----VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR--QPSMMTRMYIE 114

Query: 121 CVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFNMP- 179
             ++L+   ++     V     R         L+LR+ +    +     V++ G   +  
Sbjct: 115 QRDRLYNDNQVFAKYNV----SRLQ-----PYLKLRQALL--ELRPAKNVLIDG---VLG 160

Query: 180 AG---LRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLME-LQ-MCGTEEP 234
           +G   + A +  LS +    +  +   +F +      +    +   ++E LQ +    +P
Sbjct: 161 SGKTWV-ALDVCLSYKVQCKMDFK---IFWL-----NLKNCNSPETVLEMLQKLLYQIDP 211

Query: 235 DAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFS-------ADQR-LNAINI-C 285
           +       S+          +    +      +   Y+          + +  NA N+ C
Sbjct: 212 NWT---SRSDHSSNIKLRIHSIQAELRRLLKSKP--YENCLLVLLNVQNAKAWNAFNLSC 266

Query: 286 RSL----------------AMAYVMDQKSMLLQQ-------SSWQNNARMSNLVEQIRG- 321
           + L                     +D  SM L           + +  R  +L  ++   
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC-RPQDLPREVLTT 325

Query: 322 -PLSSIQTLSKMLSLHMKRSE----ISYDIVEDIM------VQGDRLRGTLQELQDAVFL 370
            P   +  +++ +   +   +    ++ D +  I+      ++    R     L  +VF 
Sbjct: 326 NPR-RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL--SVFP 382

Query: 371 TKANIVRYNEETLKKM-NNSAYSHPESIRSQLSN 403
             A+I       L  +  +   S    + ++L  
Sbjct: 383 PSAHI---PTILLSLIWFDVIKSDVMVVVNKLHK 413
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query454
2c2a_A258 Sensor histidine kinase; phosphotransfer, PHOQ, se 98.7
4ew8_A268 Sensor protein DIVL; signal transduction, two-comp 98.6
3zcc_A114 HAMP, osmolarity sensor protein ENVZ; signaling pr 98.58
3d36_A244 Sporulation kinase B; GHKL ATPase, four helix bund 98.37
3a0r_A349 Sensor protein; four helix bundle, PAS fold, kinas 98.2
4fpp_A247 Phosphotransferase; four helix bundle, bergerat fo 98.15
3jz3_A222 Sensor protein QSEC; helix-turn-helix, kinase doma 98.14
3zrx_A115 AF1503 protein, osmolarity sensor protein ENVZ; si 97.91
2btz_A 394 Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo 97.11
2e0a_A 394 Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP 97.07
1gkz_A 388 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] 96.97
2q8g_A 407 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 96.66
1y8o_A 419 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 96.31
3ehh_A218 Sensor kinase (YOCF protein); four-helix bundle, G 95.44
3mmh_A167 FRMSR, methionine-R-sulfoxide reductase; oxidoredu 94.69
3e0y_A181 Conserved domain protein; APC87688.2, geobacter su 94.31
2zmf_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 93.63
3trc_A171 Phosphoenolpyruvate-protein phosphotransferase; si 93.59
3p01_A184 Two-component response regulator; PSI-2, midwest c 93.48
1vhm_A195 Protein YEBR; structural genomics, unknown functio 93.14
1b3q_A 379 Protein (chemotaxis protein CHEA); histine kinase, 92.88
3rfb_A171 Putative uncharacterized protein; FRMSR, GAF, oxid 92.69
3ksh_A160 Putative uncharacterized protein; FRMSR, free-Met- 92.65
3ci6_A171 Phosphoenolpyruvate-protein phosphotransferase; PE 92.34
2e4s_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 91.68
3oov_A169 Methyl-accepting chemotaxis protein, putative; str 91.26
3nhq_A505 Bacteriophytochrome; photoreceptor, PAS, signaling 90.83
1f5m_A180 GAF; CGMP binding, signaling protein; 1.90A {Sacch 90.59
3zq5_A520 Phytochrome-like protein CPH1; arginine finger, ta 90.0
2qyb_A181 Membrane protein, putative; GAF domain, domain of 89.88
3hcy_A151 Putative two-component sensor histidine kinase PR; 89.59
3o5y_A165 Sensor protein; GAF domain, histidine, kinase, PSI 89.23
3ibj_A 691 CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE 89.2
2w3g_A153 DOSS, two component sensor histidine kinase DEVS ( 89.17
1mc0_A368 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF 88.64
2lb5_A208 Sensor histidine kinase; PCB, transferase, GAF dom 88.36
1mc0_A368 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF 87.88
4eho_A 635 Bacteriophytochrome, PAS/PAC sensor; photoreceptor 86.92
4glq_A171 Methyl-accepting chemotaxis protein; chromophore, 84.19
2vjw_A149 GAF-B, GAF family protein; histidine kinase, hypox 84.04
3k2n_A177 Sigma-54-dependent transcriptional regulator; PSI- 83.95
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Back     alignment and structure
Probab=98.70  E-value=5.5e-08  Score=87.72  Aligned_cols=74  Identities=20%  Similarity=0.292  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCC--CcccHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012875          299 MLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKR--SEISYDIVEDIMVQGDRLRGTLQELQDAVFLTK  372 (454)
Q Consensus       299 ~~Lqqql~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~p--de~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~~  372 (454)
                      ..+++....+.+++++++|||||||++|++|+++|...+..  .+...++++.|..+++||.+++.+|.++.++..
T Consensus        11 ~~l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~   86 (258)
T 2c2a_A           11 ERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLER   86 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            34555556668899999999999999999999999887654  345678999999999999999999999887543
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Back     alignment and structure
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A Back     alignment and structure
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Back     alignment and structure
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Back     alignment and structure
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A Back     alignment and structure
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Back     alignment and structure
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A Back     alignment and structure
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Back     alignment and structure
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Back     alignment and structure
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Back     alignment and structure
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Back     alignment and structure
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Back     alignment and structure
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* Back     alignment and structure
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0 Back     alignment and structure
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens} Back     alignment and structure
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens} Back     alignment and structure
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii} Back     alignment and structure
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP} Back     alignment and structure
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1 Back     alignment and structure
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A Back     alignment and structure
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae} Back     alignment and structure
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A* Back     alignment and structure
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} Back     alignment and structure
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens} Back     alignment and structure
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A* Back     alignment and structure
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A* Back     alignment and structure
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A* Back     alignment and structure
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca} Back     alignment and structure
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti} Back     alignment and structure
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans} Back     alignment and structure
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Back     alignment and structure
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A* Back     alignment and structure
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 Back     alignment and structure
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A* Back     alignment and structure
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 Back     alignment and structure
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A* Back     alignment and structure
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A Back     alignment and structure
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query454
d2c2aa189 Sensor histidine kinase TM0853 {Thermotoga maritim 99.16
d1joya_67 EnvZ histidine kinase {Escherichia coli [TaxId: 56 98.87
d1ixma_179 Sporulation response regulatory protein Spo0B {Bac 96.94
d1mc0a1187 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 93.59
d1vhma_159 Hypothetical protein YebR {Escherichia coli [TaxId 92.54
>d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: All alpha proteins
fold: ROP-like
superfamily: Homodimeric domain of signal transducing histidine kinase
family: Homodimeric domain of signal transducing histidine kinase
domain: Sensor histidine kinase TM0853
species: Thermotoga maritima [TaxId: 2336]

Probab=99.16  E-value=8.4e-11  Score=92.34  Aligned_cols=75  Identities=20%  Similarity=0.286  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHhhhcCC--CcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 012875          299 MLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKR--SEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKA  373 (454)
Q Consensus       299 ~~Lqqql~qq~~~la~L~HQiRNPLTAIRTfAkLLlkRL~p--de~~rdlae~Iv~E~dRL~~ll~qL~~~v~p~~~  373 (454)
                      ..+++....+.+++++++|||||||++|+||+++|.+....  ++..+++++.|.++++||.+++.+|.++.++...
T Consensus        11 e~l~~~~~~k~~f~~~vsHeLRtPL~~I~~~~~~L~~~~~~~~~~~~~~~l~~i~~~~~rl~~li~~lLd~srle~g   87 (89)
T d2c2aa1          11 ERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERK   87 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            34555566678999999999999999999999999988654  3566789999999999999999999999876543
>d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure