Citrus Sinensis ID: 012880
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 454 | ||||||
| 255577332 | 672 | Membralin, putative [Ricinus communis] g | 0.949 | 0.641 | 0.756 | 0.0 | |
| 147858172 | 673 | hypothetical protein VITISV_036910 [Viti | 0.949 | 0.640 | 0.747 | 0.0 | |
| 356558483 | 680 | PREDICTED: uncharacterized protein LOC10 | 0.949 | 0.633 | 0.735 | 0.0 | |
| 356525964 | 616 | PREDICTED: uncharacterized protein LOC10 | 0.949 | 0.699 | 0.722 | 0.0 | |
| 357445483 | 675 | Membralin [Medicago truncatula] gi|35548 | 0.949 | 0.638 | 0.708 | 0.0 | |
| 224054256 | 661 | predicted protein [Populus trichocarpa] | 0.944 | 0.649 | 0.729 | 0.0 | |
| 298204507 | 516 | unnamed protein product [Vitis vinifera] | 0.905 | 0.796 | 0.754 | 0.0 | |
| 145326080 | 623 | uncharacterized protein [Arabidopsis tha | 0.907 | 0.661 | 0.723 | 0.0 | |
| 297837377 | 623 | hypothetical protein ARALYDRAFT_475227 [ | 0.907 | 0.661 | 0.719 | 0.0 | |
| 449457053 | 669 | PREDICTED: uncharacterized protein LOC10 | 0.949 | 0.644 | 0.697 | 1e-180 |
| >gi|255577332|ref|XP_002529547.1| Membralin, putative [Ricinus communis] gi|223530995|gb|EEF32850.1| Membralin, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/456 (75%), Positives = 379/456 (83%), Gaps = 25/456 (5%)
Query: 1 MDPEHTFIRVQERFSRVLTPRVRAYLEYIYLFIAITLFCVLVVMHANYVQQPGCSSEFAG 60
MDPE TFIRVQERFS++LTP+VRA LEY+YLFIAITLFC+LVVMHANYVQQPGCSSE +G
Sbjct: 1 MDPEQTFIRVQERFSQMLTPKVRAALEYVYLFIAITLFCILVVMHANYVQQPGCSSELSG 60
Query: 61 IRMTEAQLIQIKISSAGLWSQNDSDSNVVDVTSVDNAINELEV----------------- 103
+ EAQLIQIKI+SAGLWS ++ +S+V V SV+ N LE+
Sbjct: 61 VETKEAQLIQIKITSAGLWSNSEVESSVAYVPSVETVSNNLELENVDGDLLEILAPKFWW 120
Query: 104 --------SGKLALKFWRTDMEPVEHLAEGSVSSQSFKPTDSAVNKIDKEEARNSFALSA 155
GKLALKFW+TD E +EH E S +S+S KP V K DK E R+SF SA
Sbjct: 121 NWIGSSARKGKLALKFWKTDSEYIEHQPESSANSESSKPIADDVVKTDKVETRSSFPASA 180
Query: 156 KEAFKSAIIHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLYLDRI 215
KE FK+AIIHFGKKW+RRLSF+WR MQI+R+FQKLWNI G+HLNLDVPK M +LYLD +
Sbjct: 181 KETFKAAIIHFGKKWHRRLSFIWRHLMQIIRSFQKLWNITGLHLNLDVPKWMRILYLDSL 240
Query: 216 HSYAVQWLENRTKAFEPTYLYTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQ 275
SYAVQWLEN++KAFEPTYLYTMEKG+FLLPE KSRHNI T NISISA+HPCFGNRWQQ
Sbjct: 241 SSYAVQWLENKSKAFEPTYLYTMEKGFFLLPEEAKSRHNIITVNISISARHPCFGNRWQQ 300
Query: 276 LLINRFVGYDTILMNSLLHTPGQGYLYNCQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGV 335
LLINR VGYDTILMNSLL PGQGYLYN QTKEFYNLSY QEPPEGPAKFGDYLVTKCGV
Sbjct: 301 LLINRIVGYDTILMNSLLSAPGQGYLYNFQTKEFYNLSYPQEPPEGPAKFGDYLVTKCGV 360
Query: 336 LMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPI 395
LMMSLFVFFTTTMSVSFTLRETQ RMLKFTVQLQHHA+HRLPTFQLIFVHVIESLVFVPI
Sbjct: 361 LMMSLFVFFTTTMSVSFTLRETQTRMLKFTVQLQHHARHRLPTFQLIFVHVIESLVFVPI 420
Query: 396 MIGILFFLFEFYDDQLLAFLVLILVWLCELFTLIRI 431
MIGILFFLFEFYDDQLLAF+VLILVWLCELFTLI +
Sbjct: 421 MIGILFFLFEFYDDQLLAFMVLILVWLCELFTLISV 456
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147858172|emb|CAN83928.1| hypothetical protein VITISV_036910 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356558483|ref|XP_003547536.1| PREDICTED: uncharacterized protein LOC100812436 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356525964|ref|XP_003531591.1| PREDICTED: uncharacterized protein LOC100810658 [Glycine max] | Back alignment and taxonomy information |
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| >gi|357445483|ref|XP_003593019.1| Membralin [Medicago truncatula] gi|355482067|gb|AES63270.1| Membralin [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|224054256|ref|XP_002298169.1| predicted protein [Populus trichocarpa] gi|222845427|gb|EEE82974.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|298204507|emb|CBI23782.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|145326080|ref|NP_001077749.1| uncharacterized protein [Arabidopsis thaliana] gi|26452729|dbj|BAC43446.1| unknown protein [Arabidopsis thaliana] gi|332195643|gb|AEE33764.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297837377|ref|XP_002886570.1| hypothetical protein ARALYDRAFT_475227 [Arabidopsis lyrata subsp. lyrata] gi|297332411|gb|EFH62829.1| hypothetical protein ARALYDRAFT_475227 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|449457053|ref|XP_004146263.1| PREDICTED: uncharacterized protein LOC101205453 [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 454 | ||||||
| TAIR|locus:4010713572 | 623 | AT1G60995 "AT1G60995" [Arabido | 0.669 | 0.487 | 0.680 | 1.3e-143 | |
| WB|WBGene00021985 | 593 | Y59C2A.2 [Caenorhabditis elega | 0.211 | 0.161 | 0.333 | 9.7e-07 | |
| UNIPROTKB|Q4ZIN3 | 620 | TMEM259 "Membralin" [Homo sapi | 0.191 | 0.140 | 0.315 | 1.2e-05 | |
| MGI|MGI:2177957 | 574 | Tmem259 "transmembrane protein | 0.165 | 0.130 | 0.325 | 2.1e-05 |
| TAIR|locus:4010713572 AT1G60995 "AT1G60995" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1080 (385.2 bits), Expect = 1.3e-143, Sum P(2) = 1.3e-143
Identities = 207/304 (68%), Positives = 238/304 (78%)
Query: 128 SSQSFKPTDSAVNKIDKEEARNSFALSAKEAFKSAIIHFGKKWYRRLSFVWRQAMQILRN 187
SS S + TD KIDKEE R+SF++SAKE ++AI+ F KK YRR+SFV + +ILR
Sbjct: 109 SSTSEENTDDTFVKIDKEEPRSSFSVSAKENVRAAILRFLKKCYRRISFVLQHTARILRG 168
Query: 188 FQKLWNIAGIHLNLDVPKLMHLLYLDRIHSYAVQWLENRTKAFEPTYLYTMEKGYFLLPE 247
+K+WNI GI LNLDVPKL+H+LY+D+++ YAVQWLE++T+ FEPTYLYTMEKGYFLLP+
Sbjct: 169 VRKIWNIIGIPLNLDVPKLLHVLYMDKVNYYAVQWLESKTQEFEPTYLYTMEKGYFLLPD 228
Query: 248 ADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLLHTPGQGYLYNCQTK 307
KSRHNIRT N+SISA+HPCFGNRWQQLLINR VGYDTI+MNSL ++ GQGYLYN QT+
Sbjct: 229 EAKSRHNIRTANVSISARHPCFGNRWQQLLINRVVGYDTIIMNSLQNSAGQGYLYNYQTR 288
Query: 308 EFYNLSYAQEPPEGPAKFGDYLVTKCGVXXXXXXXXXXXXXXXXXXXRETQARMLKFTVQ 367
EFYNLSY+QE P+G A FGDYLVTKCGV RETQ RMLKFTVQ
Sbjct: 289 EFYNLSYSQELPDGSAHFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQTRMLKFTVQ 348
Query: 368 LQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQXXXXXXXXXXXXCELFT 427
LQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQ CELFT
Sbjct: 349 LQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFMVLVLVWLCELFT 408
Query: 428 LIRI 431
LI +
Sbjct: 409 LISV 412
|
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| WB|WBGene00021985 Y59C2A.2 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q4ZIN3 TMEM259 "Membralin" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| MGI|MGI:2177957 Tmem259 "transmembrane protein 259" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00026485001 | SubName- Full=Chromosome chr12 scaffold_38, whole genome shotgun sequence; (625 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 454 | |||
| pfam09746 | 375 | pfam09746, Membralin, Tumour-associated protein | 2e-10 |
| >gnl|CDD|118278 pfam09746, Membralin, Tumour-associated protein | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 2e-10
Identities = 57/203 (28%), Positives = 90/203 (44%), Gaps = 30/203 (14%)
Query: 236 YTMEKGYFLLPEADKSRHNIRTFNISISAQHP-CFGNRWQQLLINRFVGYDTILMNSLLH 294
Y++E G+ L + + R NI + + CFG+ + + L+ F+GYD ILM S+
Sbjct: 185 YSLEYGFLRLSSSTRQRLNIPVLTVQLDPNTDKCFGDSFSRFLLKEFLGYDDILMASVKT 244
Query: 295 TPGQ----GYLYNCQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSV 350
Q GYL N T E Y Y C +M LF T SV
Sbjct: 245 LAEQEENKGYLRNVITGEHYRFVSMW-----WMARSSYPAAFC---IMLLF-----TFSV 291
Query: 351 SFTLRETQARMLKFTVQ----LQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEF 406
S LR + ++ F V L+++ R P L+ VI +LV G+ + EF
Sbjct: 292 SMLLRYSHHQIFVFIVDLLQMLEYNVSARFPAAPLL--TVILALV------GMEAIMSEF 343
Query: 407 YDDQLLAFLVLILVWLCELFTLI 429
++D AF ++++VW+ + + I
Sbjct: 344 FNDTTTAFYIILIVWIADQYDAI 366
|
Membralin is evolutionarily highly conserved; though it seems to represent a unique protein family. The protein appears to contain several transmembrane regions. In humans it is expressed in certain cancers, particularly ovarian cancers. Membralin-like gene homologues have been identified in plants including grape, cotton and tomato. Length = 375 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 454 | |||
| PF09746 | 375 | Membralin: Tumour-associated protein; InterPro: IP | 100.0 | |
| KOG2092 | 381 | consensus Uncharacterized conserved protein [Funct | 100.0 | |
| KOG2092 | 381 | consensus Uncharacterized conserved protein [Funct | 99.95 |
| >PF09746 Membralin: Tumour-associated protein; InterPro: IPR019144 Membralin is evolutionarily highly conserved, though it appears to represent a unique protein family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-97 Score=748.49 Aligned_cols=343 Identities=27% Similarity=0.442 Sum_probs=253.6
Q ss_pred cchHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHhhhhhcc-CCCCCcccccCcccCccceEEEEEeecCCCCCC
Q 012880 4 EHTFIRVQERFSRVLTPRVRAYLEYIYLFIAITLFCVLVVMHANYV-QQPGCSSEFAGIRMTEAQLIQIKISSAGLWSQN 82 (454)
Q Consensus 4 ~~~f~rv~~~yar~~~~~vRr~iEfi~Ll~AI~lf~iLvy~Hi~F~-q~~~Cl~~~~~~~wpr~giLrVeI~~n~~~~~~ 82 (454)
|-+|+|||.+|||+|||++||+|||++|+||+++|++|+|||++|+ +|++||+|+++. |||+|||||||+||. |..+
T Consensus 14 ha~f~r~a~~Yar~~p~~~Rr~iEf~~L~~Al~~~~iL~yIH~~F~rsp~tCL~~~~~~-wpR~GIlRveI~~n~-~~~~ 91 (375)
T PF09746_consen 14 HALFFRVALAYARLFPPPVRRFIEFIVLLKALFLFFILIYIHIAFSRSPITCLDHVKDD-WPRDGILRVEIVRNL-ESKN 91 (375)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHhhcc-ccccceeEEEEecCC-Cccc
Confidence 4589999999999999999999999999999999999999999999 889999999995 999999999999985 4444
Q ss_pred CCCCccccccccccchhhhhhhhhhhhhhcccCCccccccccCcCCCCCcCCcccccccccccccccccccchHhhhhhh
Q 012880 83 DSDSNVVDVTSVDNAINELEVSGKLALKFWRTDMEPVEHLAEGSVSSQSFKPTDSAVNKIDKEEARNSFALSAKEAFKSA 162 (454)
Q Consensus 83 ~~~s~~~~~~~~~~~~e~lei~~~~~~~f~k~~~~~~E~~~~~~~~~~~s~~~~d~~~~~~~e~~~~~~~~s~ke~~k~~ 162 (454)
...+++ ++++..+...+- ...+++.+.+ .+..+ .|.....
T Consensus 92 i~~~~~-~ee~L~r~~qep-----~s~siEpsTt--------eeelt--------------------------~el~~~~ 131 (375)
T PF09746_consen 92 IFQQYY-DEESLLRNVQEP-----GSYSIEPSTT--------EEELT--------------------------TELFQNS 131 (375)
T ss_pred hhhhhh-hhcchhhhhccc-----cccCcCcccc--------chhhh--------------------------Hhhhhcc
Confidence 433332 222222222111 0111111110 00000 0000000
Q ss_pred hhcccccccchhhHHHHHHHHHHHHHHhhhhhhccccccCccccccchhhcccccchhhhhh-------hccccCCceEE
Q 012880 163 IIHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLYLDRIHSYAVQWLE-------NRTKAFEPTYL 235 (454)
Q Consensus 163 ~~~~~~k~~~~~S~~~~~~~~i~~~f~klw~i~g~~~nld~~k~~~~~~~d~l~~~~v~~~e-------~~~~~~e~~ye 235 (454)
-...... -.+..|. |+..+....|..+.....+++ +.....||+||
T Consensus 132 s~kl~~~---~~~~~~~------------------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~y~ve 184 (375)
T PF09746_consen 132 SIKLESD---LEPSFLS------------------------SDSSLNNTFDEDNISDTFDFEEIMQLKNKVWPQDEYIVE 184 (375)
T ss_pred ccccccc---ccccccC------------------------CcccccccccccccccccccchhhcccccCCcccceeEE
Confidence 0000000 0000000 000000011111111111111 11223688999
Q ss_pred EeeeceeeccCcccccccCceeEEEEeCC-CCCCCcchHHHHHHhhhccchhHHhhhhcc----cCCceeEEecccCeEE
Q 012880 236 YTMEKGYFLLPEADKSRHNIRTFNISISA-QHPCFGNRWQQLLINRFVGYDTILMNSLLH----TPGQGYLYNCQTKEFY 310 (454)
Q Consensus 236 YSlE~G~L~Ls~~aR~~~nIpt~~V~L~~-~~~CFG~~~~~lll~~fvGYD~ilmnsl~~----~~gkGYLrN~~S~E~y 310 (454)
||+||||||||+++|++|||||++|+||+ +|+||||+|+|+++++|+||||++|+|+|+ ++|||||||++|||||
T Consensus 185 YsleyG~LrLs~~~r~~~nI~~~~v~ldp~~~~CfG~~~~r~ll~~f~GYd~~lm~s~k~la~~e~~~GyL~n~~t~e~y 264 (375)
T PF09746_consen 185 YSLEYGFLRLSEATRQRHNIPVMVVTLDPAKDQCFGDRFSRLLLDEFLGYDDILMSSLKTLAENEDNKGYLRNVVTGEHY 264 (375)
T ss_pred eehhcchhcCCHHHHhhcCCeEEEEEECCCCCCccCchHHHHhhhhhcCccHHHHHHHHHHhcCCCCceeeeecccccce
Confidence 99999999999999999999999999996 899999999999999999999999999995 6899999999999999
Q ss_pred eeecccCCCCCCcccchhhhhhHhHHHHHHHHHHHhhhhhHHhHHhhhhhHHHHHHHHHHhcc----ccccchhhhHHHH
Q 012880 311 NLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQ----HRLPTFQLIFVHV 386 (454)
Q Consensus 311 ~l~~~~~~~~~~ar~~~ylv~k~~Vli~slFv~f~fT~~VS~lLR~tq~qi~~Fiv~l~~~~~----~~~P~a~Li~~~v 386 (454)
||+++|. ++| ++|+ +++|+|++||++|||||||||||||+|||||||+.+ +++|+|||+ +|
T Consensus 265 ~fv~~~~----~~r-~sy~--------~a~~~m~~ft~svs~lLR~s~~qif~fiv~ll~~~~~~~~~~~p~a~ll--t~ 329 (375)
T PF09746_consen 265 RFVSMWW----MAR-SSYL--------AAFFVMLIFTFSVSMLLRYSHHQIFVFIVDLLQMLEHNLPIFFPAAPLL--TV 329 (375)
T ss_pred ehhhhhh----hhc-cHHH--------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCccccccceee--ee
Confidence 9999872 566 6887 678899999999999999999999999999999764 556777776 56
Q ss_pred HHHhhhhHHHHHHHHHHHHhhCcchhHHHHHHHHHHhhhcceeeEeeeceecceeccCCC
Q 012880 387 IESLVFVPIMIGILFFLFEFYDDQLLAFLVLILVWLCELFTLIRIFVYGTWYGCCVCAAP 446 (454)
Q Consensus 387 i~aLVfvpvmiGm~~fm~EFf~D~~lAFyViliVWladqf~aIsv~~~~~~~~~~~~~~~ 446 (454)
|++|| ||||||+|||||++||||||||||+||||||| ||+++++
T Consensus 330 il~lv------gm~~~m~eff~d~~~af~vil~vw~~d~~~~i----------~c~t~~~ 373 (375)
T PF09746_consen 330 ILALV------GMEAIMSEFFNDTTTAFYVILIVWLADQYDAI----------CCHTPIS 373 (375)
T ss_pred ehhhH------HHHHHHHHHhcchhHHHHHHHHHHHHhhccEE----------EecCccC
Confidence 55554 99999999999999999999999999999999 9999876
|
The protein appears to contain several transmembrane regions. In humans it is expressed in certain cancers, particularly ovarian cancers []. Membralin-like gene homologues have been identified in plants including grape, cotton and tomato []. |
| >KOG2092 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG2092 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00