Citrus Sinensis ID: 012880


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450----
MDPEHTFIRVQERFSRVLTPRVRAYLEYIYLFIAITLFCVLVVMHANYVQQPGCSSEFAGIRMTEAQLIQIKISSAGLWSQNDSDSNVVDVTSVDNAINELEVSGKLALKFWRTDMEPVEHLAEGSVSSQSFKPTDSAVNKIDKEEARNSFALSAKEAFKSAIIHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLYLDRIHSYAVQWLENRTKAFEPTYLYTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLLHTPGQGYLYNCQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFLVLILVWLCELFTLIRIFVYGTWYGCCVCAAPHSVLLEPL
ccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHcccccccEEEEEEcccccccccccccccccccccHHHHHHHHHcccHHHHHcccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHcccEEccccEEEEHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccHHHHHHHHHccccccccEEEEcccccccccHHHHHHcccEEEEEEEcccccccccHHHHHHHHHHHcHHHHHHHHHcccccccEEEEcccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccEEEEEEEccccccEEEcccccccccccc
ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHccccccHHcEEEEEEEcccccccccccccccccccHHHHHHHHHHcccHHHHccccccccccccccccccccccccccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccHHHHccHcccccccccHHHHccccHcccccHHHEcccccccccccEEEEEccccEEEccHHHHHHccccEEEEEEcccccccccHHHHHHHHHHccHHHHHHHHHHccccccEEEEEEcccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccEEEEcccccEEEccc
MDPEHTFIRVQERFSRVLTPRVRAYLEYIYLFIAITLFCVLVVMHAnyvqqpgcssefagIRMTEAQLIQIKISsaglwsqndsdsnvvdvtsvdnaINELEVSGKLALKFWRtdmepvehlaegsvssqsfkptdsavnkidkeeARNSFALSAKEAFKSAIIHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLYLDRIHSYAVQWLEnrtkafeptylytmekgyfllpeadksrhniRTFNIsisaqhpcfgnRWQQLLINRFVGYDTILMNsllhtpgqgylyncqtkefynlsyaqeppegpakfgdYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFLVLILVWLCELFTLIRIFVYGTwygccvcaaphsvllepl
mdpehtfirvqerfsrvltpRVRAYLEYIYLFIAITLFCVLVVMHANYVQQPGCSSEFAGIRMTEAQLIQIKISSAGLWSQNDSDSNVVDVTSVDNAINELEVSGKLALKFWRTDMEPVEHLaegsvssqsfkptDSAVNKIDKEEARNSFALSAKEAFKSAIIHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLYLDRIHSYAVQWLENRTKAFEPTYLYTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLLHTPGQGYLYNCQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFLVLILVWLCELFTLIRIFVYGTWYGCCVCAAPHSVLLEPL
MDPEHTFIRVQERFSRVLTPRVRAYLEYIYLFIAITLFCVLVVMHANYVQQPGCSSEFAGIRMTEAQLIQIKISSAGLWsqndsdsnvvdvtsvdnAINELEVSGKLALKFWRTDMEPVEHLAEGSVSSQSFKPTDSAVNKIDKEEARNSFALSAKEAFKSAIIHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLYLDRIHSYAVQWLENRTKAFEPTYLYTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLLHTPGQGYLYNCQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVlmmslfvfftttmsvsftlRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQllaflvlilvwlCELFTLIRIFVYGTWYGCCVCAAPHSVLLEPL
******FIRVQERFSRVLTPRVRAYLEYIYLFIAITLFCVLVVMHANYVQQPGCSSEFAGIRMTEAQLIQIKISSAGLWSQNDSDSNVVDVTSVDNAINELEVSGKLALKFWRTDM************************************LSAKEAFKSAIIHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLYLDRIHSYAVQWLENRTKAFEPTYLYTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLLHTPGQGYLYNCQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFLVLILVWLCELFTLIRIFVYGTWYGCCVCAAPHSVL****
*DPEHTFIRVQERFSRVLTPRVRAYLEYIYLFIAITLFCVLVVMHANYVQQPGCSSEFAGIRMTEAQLIQIKISS*******************************LALKFWR******************************************************KKWYRRLSFVWRQAM****NFQKLWNIAGIHLNLD********YLDRIHSY**Q*****TKAFEPTYLYTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLLHTPGQGYLYNCQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFLVLILVWLCELFTLIRIFVYGTWYGCCVCAAPHSVLLEPL
MDPEHTFIRVQERFSRVLTPRVRAYLEYIYLFIAITLFCVLVVMHANYVQQPGCSSEFAGIRMTEAQLIQIKISSAGLWSQNDSDSNVVDVTSVDNAINELEVSGKLALKFWRTDMEPVEH***************SAVNKIDKEEARNSFALSAKEAFKSAIIHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLYLDRIHSYAVQWLENRTKAFEPTYLYTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLLHTPGQGYLYNCQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFLVLILVWLCELFTLIRIFVYGTWYGCCVCAAPHSVLLEPL
MDPEHTFIRVQERFSRVLTPRVRAYLEYIYLFIAITLFCVLVVMHANYVQQPGCSSEFAGIRMTEAQLIQIKISSAGLWSQNDSDSNVVDVTSVDNAINELEVSGKLALKFWRTD**********************AVNKI****ARNSFALSAKEAFKSAIIHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLYLDRIHSYAVQWLENRTKAFEPTYLYTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLLHTPGQGYLYNCQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFLVLILVWLCELFTLIRIFVYGTWYGCCVCAAPHSVLLEPL
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MDPEHTFIRVQERFSRVLTPRVRAYLEYIYLFIAITLFCVLVVMHANYVQQPGCSSEFAGIRMTEAQLIQIKISSAGLWSQNDSDSNVVDVTSVDNAINELEVSGKLALKFWRTDMEPVEHLAEGSVSSQSFKPTDSAVNKIDKEEARNSFALSAKEAFKSAIIHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLYLDRIHSYAVQWLENRTKAFEPTYLYTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLLHTPGQGYLYNCQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFLVLILVWLCELFTLIRIFVYGTWYGCCVCAAPHSVLLEPL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query454 2.2.26 [Sep-21-2011]
Q4ZIN3 620 Membralin OS=Homo sapiens yes no 0.385 0.282 0.255 2e-10
Q8CIV2 574 Membralin OS=Mus musculus yes no 0.387 0.306 0.246 6e-10
>sp|Q4ZIN3|MBRL_HUMAN Membralin OS=Homo sapiens GN=C19orf6 PE=1 SV=1 Back     alignment and function desciption
 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 97/200 (48%), Gaps = 25/200 (12%)

Query: 236 YTMEKGYFLLPEADKSRHNIRTFNISISA-QHPCFGNRWQQLLINRFVGYDTILMNSLL- 293
           Y++E G+  L +A + R +I    +++   +  CFG+R+ +LL++ F+GYD ILM+S+  
Sbjct: 213 YSLEYGFLRLSQATRQRLSIPVMVVTLDPTRDQCFGDRFSRLLLDEFLGYDDILMSSVKG 272

Query: 294 ---HTPGQGYLYNCQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVL-MMSLFVFFTTTMS 349
              +   +G+L N  + E Y             +F    + +   L   ++ V F  T+S
Sbjct: 273 LAENEENKGFLRNVVSGEHY-------------RFVSMWMARTSYLAAFAIMVIF--TLS 317

Query: 350 VSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDD 409
           VS  LR +  ++  F V L    +  +     I       L  +  ++G+   + EF++D
Sbjct: 318 VSMLLRYSHHQIFVFIVDLLQMLEMNM----AIAFPAAPLLTVILALVGMEAIMSEFFND 373

Query: 410 QLLAFLVLILVWLCELFTLI 429
              AF ++++VWL + +  I
Sbjct: 374 TTTAFYIILIVWLADQYDAI 393





Homo sapiens (taxid: 9606)
>sp|Q8CIV2|MBRL_MOUSE Membralin OS=Mus musculus GN=ORF61 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query454
255577332 672 Membralin, putative [Ricinus communis] g 0.949 0.641 0.756 0.0
147858172 673 hypothetical protein VITISV_036910 [Viti 0.949 0.640 0.747 0.0
356558483 680 PREDICTED: uncharacterized protein LOC10 0.949 0.633 0.735 0.0
356525964 616 PREDICTED: uncharacterized protein LOC10 0.949 0.699 0.722 0.0
357445483 675 Membralin [Medicago truncatula] gi|35548 0.949 0.638 0.708 0.0
224054256 661 predicted protein [Populus trichocarpa] 0.944 0.649 0.729 0.0
298204507516 unnamed protein product [Vitis vinifera] 0.905 0.796 0.754 0.0
145326080 623 uncharacterized protein [Arabidopsis tha 0.907 0.661 0.723 0.0
297837377 623 hypothetical protein ARALYDRAFT_475227 [ 0.907 0.661 0.719 0.0
449457053 669 PREDICTED: uncharacterized protein LOC10 0.949 0.644 0.697 1e-180
>gi|255577332|ref|XP_002529547.1| Membralin, putative [Ricinus communis] gi|223530995|gb|EEF32850.1| Membralin, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/456 (75%), Positives = 379/456 (83%), Gaps = 25/456 (5%)

Query: 1   MDPEHTFIRVQERFSRVLTPRVRAYLEYIYLFIAITLFCVLVVMHANYVQQPGCSSEFAG 60
           MDPE TFIRVQERFS++LTP+VRA LEY+YLFIAITLFC+LVVMHANYVQQPGCSSE +G
Sbjct: 1   MDPEQTFIRVQERFSQMLTPKVRAALEYVYLFIAITLFCILVVMHANYVQQPGCSSELSG 60

Query: 61  IRMTEAQLIQIKISSAGLWSQNDSDSNVVDVTSVDNAINELEV----------------- 103
           +   EAQLIQIKI+SAGLWS ++ +S+V  V SV+   N LE+                 
Sbjct: 61  VETKEAQLIQIKITSAGLWSNSEVESSVAYVPSVETVSNNLELENVDGDLLEILAPKFWW 120

Query: 104 --------SGKLALKFWRTDMEPVEHLAEGSVSSQSFKPTDSAVNKIDKEEARNSFALSA 155
                    GKLALKFW+TD E +EH  E S +S+S KP    V K DK E R+SF  SA
Sbjct: 121 NWIGSSARKGKLALKFWKTDSEYIEHQPESSANSESSKPIADDVVKTDKVETRSSFPASA 180

Query: 156 KEAFKSAIIHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLYLDRI 215
           KE FK+AIIHFGKKW+RRLSF+WR  MQI+R+FQKLWNI G+HLNLDVPK M +LYLD +
Sbjct: 181 KETFKAAIIHFGKKWHRRLSFIWRHLMQIIRSFQKLWNITGLHLNLDVPKWMRILYLDSL 240

Query: 216 HSYAVQWLENRTKAFEPTYLYTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQ 275
            SYAVQWLEN++KAFEPTYLYTMEKG+FLLPE  KSRHNI T NISISA+HPCFGNRWQQ
Sbjct: 241 SSYAVQWLENKSKAFEPTYLYTMEKGFFLLPEEAKSRHNIITVNISISARHPCFGNRWQQ 300

Query: 276 LLINRFVGYDTILMNSLLHTPGQGYLYNCQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGV 335
           LLINR VGYDTILMNSLL  PGQGYLYN QTKEFYNLSY QEPPEGPAKFGDYLVTKCGV
Sbjct: 301 LLINRIVGYDTILMNSLLSAPGQGYLYNFQTKEFYNLSYPQEPPEGPAKFGDYLVTKCGV 360

Query: 336 LMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPI 395
           LMMSLFVFFTTTMSVSFTLRETQ RMLKFTVQLQHHA+HRLPTFQLIFVHVIESLVFVPI
Sbjct: 361 LMMSLFVFFTTTMSVSFTLRETQTRMLKFTVQLQHHARHRLPTFQLIFVHVIESLVFVPI 420

Query: 396 MIGILFFLFEFYDDQLLAFLVLILVWLCELFTLIRI 431
           MIGILFFLFEFYDDQLLAF+VLILVWLCELFTLI +
Sbjct: 421 MIGILFFLFEFYDDQLLAFMVLILVWLCELFTLISV 456




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858172|emb|CAN83928.1| hypothetical protein VITISV_036910 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356558483|ref|XP_003547536.1| PREDICTED: uncharacterized protein LOC100812436 [Glycine max] Back     alignment and taxonomy information
>gi|356525964|ref|XP_003531591.1| PREDICTED: uncharacterized protein LOC100810658 [Glycine max] Back     alignment and taxonomy information
>gi|357445483|ref|XP_003593019.1| Membralin [Medicago truncatula] gi|355482067|gb|AES63270.1| Membralin [Medicago truncatula] Back     alignment and taxonomy information
>gi|224054256|ref|XP_002298169.1| predicted protein [Populus trichocarpa] gi|222845427|gb|EEE82974.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|298204507|emb|CBI23782.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|145326080|ref|NP_001077749.1| uncharacterized protein [Arabidopsis thaliana] gi|26452729|dbj|BAC43446.1| unknown protein [Arabidopsis thaliana] gi|332195643|gb|AEE33764.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297837377|ref|XP_002886570.1| hypothetical protein ARALYDRAFT_475227 [Arabidopsis lyrata subsp. lyrata] gi|297332411|gb|EFH62829.1| hypothetical protein ARALYDRAFT_475227 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449457053|ref|XP_004146263.1| PREDICTED: uncharacterized protein LOC101205453 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query454
TAIR|locus:4010713572 623 AT1G60995 "AT1G60995" [Arabido 0.669 0.487 0.680 1.3e-143
WB|WBGene00021985593 Y59C2A.2 [Caenorhabditis elega 0.211 0.161 0.333 9.7e-07
UNIPROTKB|Q4ZIN3 620 TMEM259 "Membralin" [Homo sapi 0.191 0.140 0.315 1.2e-05
MGI|MGI:2177957 574 Tmem259 "transmembrane protein 0.165 0.130 0.325 2.1e-05
TAIR|locus:4010713572 AT1G60995 "AT1G60995" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1080 (385.2 bits), Expect = 1.3e-143, Sum P(2) = 1.3e-143
 Identities = 207/304 (68%), Positives = 238/304 (78%)

Query:   128 SSQSFKPTDSAVNKIDKEEARNSFALSAKEAFKSAIIHFGKKWYRRLSFVWRQAMQILRN 187
             SS S + TD    KIDKEE R+SF++SAKE  ++AI+ F KK YRR+SFV +   +ILR 
Sbjct:   109 SSTSEENTDDTFVKIDKEEPRSSFSVSAKENVRAAILRFLKKCYRRISFVLQHTARILRG 168

Query:   188 FQKLWNIAGIHLNLDVPKLMHLLYLDRIHSYAVQWLENRTKAFEPTYLYTMEKGYFLLPE 247
              +K+WNI GI LNLDVPKL+H+LY+D+++ YAVQWLE++T+ FEPTYLYTMEKGYFLLP+
Sbjct:   169 VRKIWNIIGIPLNLDVPKLLHVLYMDKVNYYAVQWLESKTQEFEPTYLYTMEKGYFLLPD 228

Query:   248 ADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLLHTPGQGYLYNCQTK 307
               KSRHNIRT N+SISA+HPCFGNRWQQLLINR VGYDTI+MNSL ++ GQGYLYN QT+
Sbjct:   229 EAKSRHNIRTANVSISARHPCFGNRWQQLLINRVVGYDTIIMNSLQNSAGQGYLYNYQTR 288

Query:   308 EFYNLSYAQEPPEGPAKFGDYLVTKCGVXXXXXXXXXXXXXXXXXXXRETQARMLKFTVQ 367
             EFYNLSY+QE P+G A FGDYLVTKCGV                   RETQ RMLKFTVQ
Sbjct:   289 EFYNLSYSQELPDGSAHFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQTRMLKFTVQ 348

Query:   368 LQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQXXXXXXXXXXXXCELFT 427
             LQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQ            CELFT
Sbjct:   349 LQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFMVLVLVWLCELFT 408

Query:   428 LIRI 431
             LI +
Sbjct:   409 LISV 412


GO:0003674 "molecular_function" evidence=ND
GO:0005739 "mitochondrion" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005783 "endoplasmic reticulum" evidence=IDA
WB|WBGene00021985 Y59C2A.2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q4ZIN3 TMEM259 "Membralin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2177957 Tmem259 "transmembrane protein 259" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00026485001
SubName- Full=Chromosome chr12 scaffold_38, whole genome shotgun sequence; (625 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query454
pfam09746375 pfam09746, Membralin, Tumour-associated protein 2e-10
>gnl|CDD|118278 pfam09746, Membralin, Tumour-associated protein Back     alignment and domain information
 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 57/203 (28%), Positives = 90/203 (44%), Gaps = 30/203 (14%)

Query: 236 YTMEKGYFLLPEADKSRHNIRTFNISISAQHP-CFGNRWQQLLINRFVGYDTILMNSLLH 294
           Y++E G+  L  + + R NI    + +      CFG+ + + L+  F+GYD ILM S+  
Sbjct: 185 YSLEYGFLRLSSSTRQRLNIPVLTVQLDPNTDKCFGDSFSRFLLKEFLGYDDILMASVKT 244

Query: 295 TPGQ----GYLYNCQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSV 350
              Q    GYL N  T E Y                 Y    C   +M LF     T SV
Sbjct: 245 LAEQEENKGYLRNVITGEHYRFVSMW-----WMARSSYPAAFC---IMLLF-----TFSV 291

Query: 351 SFTLRETQARMLKFTVQ----LQHHAQHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEF 406
           S  LR +  ++  F V     L+++   R P   L+   VI +LV      G+   + EF
Sbjct: 292 SMLLRYSHHQIFVFIVDLLQMLEYNVSARFPAAPLL--TVILALV------GMEAIMSEF 343

Query: 407 YDDQLLAFLVLILVWLCELFTLI 429
           ++D   AF ++++VW+ + +  I
Sbjct: 344 FNDTTTAFYIILIVWIADQYDAI 366


Membralin is evolutionarily highly conserved; though it seems to represent a unique protein family. The protein appears to contain several transmembrane regions. In humans it is expressed in certain cancers, particularly ovarian cancers. Membralin-like gene homologues have been identified in plants including grape, cotton and tomato. Length = 375

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 454
PF09746375 Membralin: Tumour-associated protein; InterPro: IP 100.0
KOG2092381 consensus Uncharacterized conserved protein [Funct 100.0
KOG2092 381 consensus Uncharacterized conserved protein [Funct 99.95
>PF09746 Membralin: Tumour-associated protein; InterPro: IPR019144 Membralin is evolutionarily highly conserved, though it appears to represent a unique protein family Back     alignment and domain information
Probab=100.00  E-value=7.4e-97  Score=748.49  Aligned_cols=343  Identities=27%  Similarity=0.442  Sum_probs=253.6

Q ss_pred             cchHHHHHHHHhhccCcchhhHHHHHHHHHHHHHHHHHHhhhhhcc-CCCCCcccccCcccCccceEEEEEeecCCCCCC
Q 012880            4 EHTFIRVQERFSRVLTPRVRAYLEYIYLFIAITLFCVLVVMHANYV-QQPGCSSEFAGIRMTEAQLIQIKISSAGLWSQN   82 (454)
Q Consensus         4 ~~~f~rv~~~yar~~~~~vRr~iEfi~Ll~AI~lf~iLvy~Hi~F~-q~~~Cl~~~~~~~wpr~giLrVeI~~n~~~~~~   82 (454)
                      |-+|+|||.+|||+|||++||+|||++|+||+++|++|+|||++|+ +|++||+|+++. |||+|||||||+||. |..+
T Consensus        14 ha~f~r~a~~Yar~~p~~~Rr~iEf~~L~~Al~~~~iL~yIH~~F~rsp~tCL~~~~~~-wpR~GIlRveI~~n~-~~~~   91 (375)
T PF09746_consen   14 HALFFRVALAYARLFPPPVRRFIEFIVLLKALFLFFILIYIHIAFSRSPITCLDHVKDD-WPRDGILRVEIVRNL-ESKN   91 (375)
T ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHhhcc-ccccceeEEEEecCC-Cccc
Confidence            4589999999999999999999999999999999999999999999 889999999995 999999999999985 4444


Q ss_pred             CCCCccccccccccchhhhhhhhhhhhhhcccCCccccccccCcCCCCCcCCcccccccccccccccccccchHhhhhhh
Q 012880           83 DSDSNVVDVTSVDNAINELEVSGKLALKFWRTDMEPVEHLAEGSVSSQSFKPTDSAVNKIDKEEARNSFALSAKEAFKSA  162 (454)
Q Consensus        83 ~~~s~~~~~~~~~~~~e~lei~~~~~~~f~k~~~~~~E~~~~~~~~~~~s~~~~d~~~~~~~e~~~~~~~~s~ke~~k~~  162 (454)
                      ...+++ ++++..+...+-     ...+++.+.+        .+..+                          .|.....
T Consensus        92 i~~~~~-~ee~L~r~~qep-----~s~siEpsTt--------eeelt--------------------------~el~~~~  131 (375)
T PF09746_consen   92 IFQQYY-DEESLLRNVQEP-----GSYSIEPSTT--------EEELT--------------------------TELFQNS  131 (375)
T ss_pred             hhhhhh-hhcchhhhhccc-----cccCcCcccc--------chhhh--------------------------Hhhhhcc
Confidence            433332 222222222111     0111111110        00000                          0000000


Q ss_pred             hhcccccccchhhHHHHHHHHHHHHHHhhhhhhccccccCccccccchhhcccccchhhhhh-------hccccCCceEE
Q 012880          163 IIHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLYLDRIHSYAVQWLE-------NRTKAFEPTYL  235 (454)
Q Consensus       163 ~~~~~~k~~~~~S~~~~~~~~i~~~f~klw~i~g~~~nld~~k~~~~~~~d~l~~~~v~~~e-------~~~~~~e~~ye  235 (454)
                      -......   -.+..|.                        |+..+....|..+.....+++       +.....||+||
T Consensus       132 s~kl~~~---~~~~~~~------------------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~y~ve  184 (375)
T PF09746_consen  132 SIKLESD---LEPSFLS------------------------SDSSLNNTFDEDNISDTFDFEEIMQLKNKVWPQDEYIVE  184 (375)
T ss_pred             ccccccc---ccccccC------------------------CcccccccccccccccccccchhhcccccCCcccceeEE
Confidence            0000000   0000000                        000000011111111111111       11223688999


Q ss_pred             EeeeceeeccCcccccccCceeEEEEeCC-CCCCCcchHHHHHHhhhccchhHHhhhhcc----cCCceeEEecccCeEE
Q 012880          236 YTMEKGYFLLPEADKSRHNIRTFNISISA-QHPCFGNRWQQLLINRFVGYDTILMNSLLH----TPGQGYLYNCQTKEFY  310 (454)
Q Consensus       236 YSlE~G~L~Ls~~aR~~~nIpt~~V~L~~-~~~CFG~~~~~lll~~fvGYD~ilmnsl~~----~~gkGYLrN~~S~E~y  310 (454)
                      ||+||||||||+++|++|||||++|+||+ +|+||||+|+|+++++|+||||++|+|+|+    ++|||||||++|||||
T Consensus       185 YsleyG~LrLs~~~r~~~nI~~~~v~ldp~~~~CfG~~~~r~ll~~f~GYd~~lm~s~k~la~~e~~~GyL~n~~t~e~y  264 (375)
T PF09746_consen  185 YSLEYGFLRLSEATRQRHNIPVMVVTLDPAKDQCFGDRFSRLLLDEFLGYDDILMSSLKTLAENEDNKGYLRNVVTGEHY  264 (375)
T ss_pred             eehhcchhcCCHHHHhhcCCeEEEEEECCCCCCccCchHHHHhhhhhcCccHHHHHHHHHHhcCCCCceeeeecccccce
Confidence            99999999999999999999999999996 899999999999999999999999999995    6899999999999999


Q ss_pred             eeecccCCCCCCcccchhhhhhHhHHHHHHHHHHHhhhhhHHhHHhhhhhHHHHHHHHHHhcc----ccccchhhhHHHH
Q 012880          311 NLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQ----HRLPTFQLIFVHV  386 (454)
Q Consensus       311 ~l~~~~~~~~~~ar~~~ylv~k~~Vli~slFv~f~fT~~VS~lLR~tq~qi~~Fiv~l~~~~~----~~~P~a~Li~~~v  386 (454)
                      ||+++|.    ++| ++|+        +++|+|++||++|||||||||||||+|||||||+.+    +++|+|||+  +|
T Consensus       265 ~fv~~~~----~~r-~sy~--------~a~~~m~~ft~svs~lLR~s~~qif~fiv~ll~~~~~~~~~~~p~a~ll--t~  329 (375)
T PF09746_consen  265 RFVSMWW----MAR-SSYL--------AAFFVMLIFTFSVSMLLRYSHHQIFVFIVDLLQMLEHNLPIFFPAAPLL--TV  329 (375)
T ss_pred             ehhhhhh----hhc-cHHH--------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCccccccceee--ee
Confidence            9999872    566 6887        678899999999999999999999999999999764    556777776  56


Q ss_pred             HHHhhhhHHHHHHHHHHHHhhCcchhHHHHHHHHHHhhhcceeeEeeeceecceeccCCC
Q 012880          387 IESLVFVPIMIGILFFLFEFYDDQLLAFLVLILVWLCELFTLIRIFVYGTWYGCCVCAAP  446 (454)
Q Consensus       387 i~aLVfvpvmiGm~~fm~EFf~D~~lAFyViliVWladqf~aIsv~~~~~~~~~~~~~~~  446 (454)
                      |++||      ||||||+|||||++||||||||||+|||||||          ||+++++
T Consensus       330 il~lv------gm~~~m~eff~d~~~af~vil~vw~~d~~~~i----------~c~t~~~  373 (375)
T PF09746_consen  330 ILALV------GMEAIMSEFFNDTTTAFYVILIVWLADQYDAI----------CCHTPIS  373 (375)
T ss_pred             ehhhH------HHHHHHHHHhcchhHHHHHHHHHHHHhhccEE----------EecCccC
Confidence            55554      99999999999999999999999999999999          9999876



The protein appears to contain several transmembrane regions. In humans it is expressed in certain cancers, particularly ovarian cancers []. Membralin-like gene homologues have been identified in plants including grape, cotton and tomato [].

>KOG2092 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2092 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00