Citrus Sinensis ID: 012882

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450----
Protein Sequence
MDVSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLIAQRSIDQVHYFWPLDDNAVRQLEAMWCQVTNHFGGKIISSTIPVMFGRTLEVPQSCNGVARFTFEYLCGRPVGAADYIAVAHNYHTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLFCSAASSIDDLFQGTEEGTLFDLESFQFETEIEGGKLRRDVLAEGTVSSGGAPAGIVSMLSGQEELFAFRRAWFVTVSTLVVDINDGYVNISSVWY
Secondary Structure (PSIPRED)
ccHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccEEEccccccccccHHHHHHHHHHHHHHcccEEEEEccccccccccccccccccHHHHHHHHHHcEEEEccccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHcccccccccccccEEcccEEEEccccccEEEEEHHHHHcccccHHHHHHHHHHccEEEEcccccccccccHHHHHHHHHHHHHHccccEEEEEEcccHHHHHcccccccccccccccHHHHHHHcHHHHHHHHHccccccccccccccccccHHHHHHHccccccccccccccccHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHccccccccccccccccccHHHHHHHHcccccccccccEEEEEccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccEEEEcccEHcHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHccHHHHHHHHHHHHHHHcccEEEEccccccccccccHcccccEEEEcccHHHHHHHHHHHHHHHcccccccccccEEEEEcEEEEEEcccccEEEEcHHHHHcccccHHHHHHHHHHccEEEEEccccccHHHHHHHHHHHHHHHHHHHcccEEEEEEcccHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccEEcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccc
Coil and Loop (DISEMBL)
mdvsvrknpenvepgvgRWVSYLNRERKLdslvgrcptappapkglylygnvgsgkTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGwitnlpfdsKVMEWVAAEEKYKQEVQMKNILPAVADKFLvdqhadqrgasilcfdeiqTVDVFAIVALSGIVSRLLSTGTVLvatsnrapwdlnqdgMQREIFQKLVAKLEKHceiipigseVDYRRLIAQRSIDqvhyfwplddNAVRQLEAMWCQVTnhfggkiisstipvmfgrtlevpqscngvaRFTFEYlcgrpvgaaDYIAVAHNYHTVFITNIPVMSMRIRDKARRFITLIDELYNhhcclfcsaassiddlfqgteegtlfdlesfqfeteieggkLRRDVLaegtvssggapaGIVSMLSGQEELFAFRRAWFVTVSTLVVDINDGYVNISSVWY
Flexible Loop (DISEMBL)
mdvsvrknpenvepgvgrwVSYLNRERKLdslvgrcptappapkglylYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATsnrapwdlnqdgMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLIAQRSIDQVHYFWPLDDNAVRQLEAMWCQVTNHFGGKIISSTIPVMFGRTLEVPQSCNGVARFTFEYLCGRPVGAADYIAVAHNYHTVFitnipvmsmRIRDKARRFITLIDELYNHHCCLFCSAASSIDDLFQGTEEGTLFDLESFQFETEIEGGKLRRDVLAEGTVSSGGAPAGIVSMLSGQEELFAFRRAWFVTVSTLvvdindgyvnissvwy
Low Complexity Region (SEG)
MDVSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLIAQRSIDQVHYFWPLDDNAVRQLEAMWCQVTNHFGGKIISSTIPVMFGRTLEVPQSCNGVARFTFEYLCGRPVGAADYIAVAHNYHTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLFCSAASSIDDLFQGTEEGTLFDLESFQFETEIEGGKLRRDVLAEGTVSSGGAPAGIVSMLSGQEELFAFRRAWFVTVSTLVVDINDGYVNISSVWY
Disordered region (IsUnstruct)
***************VGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLIAQRSIDQVHYFWPLDDNAVRQLEAMWCQVTNHFGGKIISSTIPVMFGRTLEVPQSCNGVARFTFEYLCGRPVGAADYIAVAHNYHTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLFCSAASSIDDLFQGTEEGTLFDLESFQFETEIEGGKLRRDVLAEGTVSSGGAPAGIVSMLSGQEELFAFRRAWFVTVSTLVVDINDGYVNISSVW*
Disordered Region (DISOPRED)
MDVSVRKNPENVEPGVGRWV*************GRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMH******************WITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLIAQRSIDQVHYFWPLDDNAVRQLEAMWCQVTNH*********IPVMFGRTLEVPQSCNGVARFTFEYLCGRPVGAADYIAVAHNYHTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLFCSAASSIDDLFQGTEEGTL*************************************SMLSGQEELFAFRRAWFVTVSTLVVDINDGYVNIS*VW*
Disordered Region (DISEMBL)
***********VEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLIAQRSIDQVHYFWPLDDNAVRQLEAMWCQVTNHFGGKIISSTIPVMFGRTLEVPQSCNGVARFTFEYLCGRPVGAADYIAVAHNYHTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLFCSAASSIDDLFQGTEEGTLFDLESFQFETEIEGGKLRRDVLAEGTVSSGGAPAGIVSMLSGQEELFAFRRAWFVTVSTLVVDINDGYVNISSVWY
Disordered Region (DISPRO)
*******NPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQ********SISGWITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLIAQRSIDQVHYFWPLDDNAVRQLEAMWCQVTNHFGGKIISSTIPVMFGRTLEVPQSCNGVARFTFEYLCGRPVGAADYIAVAHNYHTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLFCSAASSIDDLFQGTEEGTLFDLESFQFETEIEGGKLRRDVLAEGTV*******GIVSMLSGQEELFAFRRAWFVTVSTLVVDINDGYVNISSVWY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDVSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLIAQRSIDQVHYFWPLDDNAVRQLEAMWCQVTNHFGGKIISSTIPVMFGRTLEVPQSCNGVARFTFEYLCGRPVGAADYIAVAHNYHTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLFCSAASSIDDLFQGTEEGTLFDLESFQFETEIEGGKLRRDVLAEGTVSSGGAPAGIVSMLSGQEELFAFRRAWFVTVSTLVVDINDGYVNISSVWY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	454	2.2.26 [Sep-21-2011]
Q3V384	480	Lactation elevated protei	yes	no	0.731	0.691	0.344	4e-52
Q8WV93	481	Lactation elevated protei	yes	no	0.751	0.708	0.323	8e-52
Q32PX9	480	Lactation elevated protei	yes	no	0.718	0.679	0.337	2e-50
P46441	464	Putative ATPase N2B OS=Ha	N/A	no	0.735	0.719	0.329	3e-48
O42895	454	Uncharacterized protein C	yes	no	0.748	0.748	0.306	9e-45
Q5TYS0	503	Lactation elevated protei	no	no	0.740	0.667	0.288	9e-41
P32317	509	Protein AFG1 OS=Saccharom	yes	no	0.841	0.750	0.289	2e-39
P64612	375	Uncharacterized protein Y	N/A	no	0.601	0.728	0.3	2e-37
P64613	375	Uncharacterized protein Y	N/A	no	0.601	0.728	0.3	2e-37

>sp|Q3V384|LACE1_MOUSE Lactation elevated protein 1 OS=Mus musculus GN=Lace1 PE=2 SV=1

 Score =  206 bits (523), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 138/401 (34%), Positives = 207/401 (51%), Gaps = 69/401 (17%)

Query: 43  PKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKS 102
           PKGLY+YG+VG+GKTM+MDMFY   E   K ++R HFH  ML ++  +H L      ++S
Sbjct: 129 PKGLYVYGDVGTGKTMVMDMFYAYVE--TKRKKRVHFHGFMLDVHRRIHHL------KQS 180

Query: 103 LRSSISGWITNLPFDSKVMEWVAA-EEKYKQEVQMKNILPAVADKFLVDQHADQRGASIL 161
           L    +G++      +K  + +A   E+  QE                         S+L
Sbjct: 181 LPKRKAGFM------AKSYDPIAPIAEEISQET------------------------SLL 210

Query: 162 CFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEK 221
           CFDE Q  D+   + L  +   L   G V+VATSNR P DL ++G+QR  F   +A L++
Sbjct: 211 CFDEFQVTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANFVPFIAVLKE 270

Query: 222 HCEIIPIGSEVDYRRLIAQRSIDQVHYFWPLDDNAVRQLEAMWCQVTNHFGGKIISSTIP 281
           +C+ + + S VDYR+    R +      + L   A   +EA+  ++ +    K    T P
Sbjct: 271 YCDTLQLDSGVDYRK----RELAPAGKLYYLTSEA--DVEAVVDKLFDELAQKQNDLTSP 324

Query: 282 VMF---GRTLEVPQSCNGVARFTFEYLCGRPVGAADYIAVAHNYHTVFITNIPVMSMRIR 338
            +    GR L + ++C  VA  TFE LC RP+GA+DY+ ++ N+ TV I NIP  S+  R
Sbjct: 325 RILKVQGRELRLNKACGSVADCTFEELCERPLGASDYLELSKNFDTVIIRNIPQFSLAKR 384

Query: 339 DKARRFITLIDELYNHHCCLFCSAASSIDDLFQGTEEGTLFDLESFQFETEIEGGKLRRD 398
            +ARRFITLID  Y+    + CSA++ I  LF          L   Q ++E +  ++  D
Sbjct: 385 TQARRFITLIDNFYDFKVRIICSASAPISSLF----------LHQHQ-DSESDQSRILMD 433

Query: 399 VLAEGTVSSGGAPAGIVSMLSGQEELFAFRRAWFVTVSTLV 439
            L     S+G      +SM +G+EE+FAF+R    T+S L 
Sbjct: 434 DLGLSQDSAG------LSMFTGEEEIFAFQR----TISRLT 464

Mus musculus (taxid: 10090)

>sp|Q8WV93|LACE1_HUMAN Lactation elevated protein 1 OS=Homo sapiens GN=LACE1 PE=2 SV=2

 Score =  204 bits (520), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 133/411 (32%), Positives = 209/411 (50%), Gaps = 70/411 (17%)

Query: 43  PKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKS 102
           P+GLY+YG+VG+GKTM+MDMFY   E  +K ++R HFH  ML +++ +HRL      ++S
Sbjct: 129 PRGLYVYGDVGTGKTMVMDMFYAYVE--MKRKKRVHFHGFMLDVHKRIHRL------KQS 180

Query: 103 LRSSISGWITNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASI 160
           L     G++    +D  + + E ++ E                              A +
Sbjct: 181 LPKRKPGFMAK-SYDPIAPIAEEISEE------------------------------ACL 209

Query: 161 LCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLE 220
           LCFDE Q  D+   + L  +   L   G V+VATSNR P DL ++G+QR  F   +A L+
Sbjct: 210 LCFDEFQVTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANFVPFIAVLK 269

Query: 221 KHCEIIPIGSEVDYRRLIAQRSIDQVHYFWPLDDNAVRQLEAMWCQVTNHFGGKIISSTI 280
           ++C  + + S +DYR+    R +      + L   A   +EA+  ++ +    K    T 
Sbjct: 270 EYCNTVQLDSGIDYRK----RELPAAGKLYYLTSEA--DVEAVMDKLFDELAQKQNDLTR 323

Query: 281 PVMF---GRTLEVPQSCNGVARFTFEYLCGRPVGAADYIAVAHNYHTVFITNIPVMSMRI 337
           P +    GR L + ++C  VA  TFE LC RP+GA+DY+ ++ N+ T+F+ NIP  ++  
Sbjct: 324 PRILKVQGRELRLNKACGTVADCTFEELCERPLGASDYLELSKNFDTIFLRNIPQFTLAN 383

Query: 338 RDKARRFITLIDELYNHHCCLFCSAASSIDDLFQGTEEGTLFDLESFQFETEIEGGKLRR 397
           R + RRFITLID  Y+    + CSA++ I  LF                ++E+E  ++  
Sbjct: 384 RTQGRRFITLIDNFYDLKVRIICSASTPISSLFLHQHH-----------DSELEQSRILM 432

Query: 398 DVLAEGTVSSGGAPAGIVSMLSGQEELFAFRRAWFVTVSTLVVDINDGYVN 448
           D L     S+ G     +SM +G+EE+FAF+R    T+S L     + Y N
Sbjct: 433 DDLGLSQDSAEG-----LSMFTGEEEIFAFQR----TISRLTEMQTEQYWN 474

Homo sapiens (taxid: 9606)

>sp|Q32PX9|LACE1_RAT Lactation elevated protein 1 OS=Rattus norvegicus GN=Lace1 PE=2 SV=1

 Score =  200 bits (508), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 132/391 (33%), Positives = 200/391 (51%), Gaps = 65/391 (16%)

Query: 43  PKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKS 102
           PKGLY+YG+VG+GKTM+MDMFY   E  VK ++R HFH  ML +++ +HRL      ++S
Sbjct: 129 PKGLYVYGDVGTGKTMVMDMFYEYVE--VKSKRRVHFHGFMLDVHKRIHRL------KQS 180

Query: 103 LRSSISGWITNLPFDSKVMEWVAA-EEKYKQEVQMKNILPAVADKFLVDQHADQRGASIL 161
           L     G++      +K  + +A   E+  QE                        AS+L
Sbjct: 181 LPKRKVGFM------AKSYDPIAPIAEEISQE------------------------ASLL 210

Query: 162 CFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEK 221
           CFDE Q  D+   + L  +   L   G V+VATSNR P DL ++G+QR  F   +A L++
Sbjct: 211 CFDEFQVTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANFVPFIAVLKE 270

Query: 222 HCEIIPIGSEVDYRRLIAQRSIDQVHYFWPLDDNAVRQLEAMWCQVTNHFGGKIISSTIP 281
           +C  + + S VDYR+    R +      + L   A   +  +  ++ +    K    T P
Sbjct: 271 YCNTVQLDSGVDYRK----RELTPAGKLYYLTSEA--DVGTVMDKLFDELAQKQNDLTSP 324

Query: 282 VMF---GRTLEVPQSCNGVARFTFEYLCGRPVGAADYIAVAHNYHTVFITNIPVMSMRIR 338
            +    GR L + ++C  VA  TFE LC RP+GA+DY+ ++ N+ TV I NIP  S+  R
Sbjct: 325 RILKVQGRELRLNKACGTVADCTFEELCERPLGASDYLELSKNFDTVIIRNIPQFSLAKR 384

Query: 339 DKARRFITLIDELYNHHCCLFCSAASSIDDLFQGTEEGTLFDLESFQFETEIEGGKLRRD 398
            + RRFITLID  Y+    + CSA+  I  LF    +           ++E +  ++  D
Sbjct: 385 TQVRRFITLIDNFYDFKVRIICSASVPISSLFVYQHQ-----------DSESDQSRVLMD 433

Query: 399 VLAEGTVSSGGAPAGIVSMLSGQEELFAFRR 429
            L     S+G      +SM +G+EE+F+F+R
Sbjct: 434 DLGLSQDSAG------LSMFTGEEEIFSFQR 458

Rattus norvegicus (taxid: 10116)

>sp|P46441|N2B_HAEIR Putative ATPase N2B OS=Haematobia irritans PE=2 SV=1

 Score =  192 bits (489), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 129/391 (32%), Positives = 192/391 (49%), Gaps = 57/391 (14%)

Query: 42  APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEK 101
           APKG+Y+YG+VG GKT LMDMFY   + I K +QR HF+  M K++  +H++ +    E+
Sbjct: 109 APKGMYIYGSVGGGKTTLMDMFYSCCDDIPK-KQRVHFNSFMSKVHGLIHKVKQ----ER 163

Query: 102 SLRSSISGWITNLPFDSK--VMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGAS 159
             +         LPFD    V E +A E                              + 
Sbjct: 164 GPQDRAFNSEKPLPFDPTLPVAEMIANE------------------------------SW 193

Query: 160 ILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKL 219
           ++CFDE Q  D+   + L  + + L + G V +ATSNR P DL ++G+QR  F   +  L
Sbjct: 194 LICFDEFQVTDIADAMILKSLFTHLFNEGIVCIATSNRHPNDLYKNGLQRSNFIPFIGVL 253

Query: 220 EKHCEIIPIGSEVDYRRLIAQRSIDQVHYFWPLDDNAVRQLEAMWCQVTNHFGGKIISST 279
              C +  + S VDYRR IAQ      +YF     +A  Q+E M+  + +     I   T
Sbjct: 254 LNRCNVAAMDSGVDYRR-IAQSG--DTNYFVTTQTDAKSQMERMFKILCSQENDIIRPRT 310

Query: 280 IPVMFGRTLEVPQSCNGVARFTFEYLCGRPVGAADYIAVAHNYHTVFITNIPVMSMRIRD 339
           I   FGR L   ++C  V    FE LC RP+G +DYI +   +HTV I ++P +++ ++ 
Sbjct: 311 I-THFGRDLTFQRTCGQVLDSNFEELCNRPLGGSDYIQIGQFFHTVLIHDVPQLTLLLKS 369

Query: 340 KARRFITLIDELYNHHCCLFCSAASSIDDLFQGTEEGTLFDLESFQFETEIEGGKLRRDV 399
           + RRFITLID LY++   +  SA   +D LF  T++    DL   Q        ++  D 
Sbjct: 370 QMRRFITLIDTLYDNRVRVVISAEVPLDQLFSFTDKPK--DLADEQ--------RMLMDD 419

Query: 400 LAEGTVSSGGAPAGIVSMLSGQEELFAFRRA 430
           L  G   +        S+ +G+EE+FAF R 
Sbjct: 420 LKLGDTDTSA------SVFTGEEEMFAFDRT 444

Haematobia irritans (taxid: 7368)

>sp|O42895|YBQ2_SCHPO Uncharacterized protein C115.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC115.02c PE=3 SV=1

 Score =  181 bits (460), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 128/417 (30%), Positives = 189/417 (45%), Gaps = 77/417 (18%)

Query: 19  WVSYLNR---ERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQ 75
           W+S L +    +K  +L    P  P  PKG+YLYG+VG GKT LMD+FY      V   Q
Sbjct: 92  WISPLKKMFSRKKSPTLTSSLP-VPGMPKGIYLYGDVGCGKTALMDLFYHNLPPNVTRSQ 150

Query: 76  RFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVMEWVAAEEKYKQEVQ 135
           R HFH  M++++   H L                                 +++Y  E+ 
Sbjct: 151 RIHFHAFMMQVHRTSHDL---------------------------------QDRYGFEID 177

Query: 136 -MKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVAT 194
            + +I   +A           +  ++LCFDE+Q  DV   + L  +   L+  G V+  T
Sbjct: 178 FIDHIASGIA-----------KETTVLCFDELQVTDVADALLLRRLFEALMKYGVVIFIT 226

Query: 195 SNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLIAQRSIDQVHYFWPLDD 254
           SNRAP DL ++G+QRE F   +  LE   ++I + S  DYRRL   +S  +  Y +P + 
Sbjct: 227 SNRAPSDLYKNGIQRESFIPCIKLLEHRLQVICLDSPNDYRRL---KSKTEDTYLYPANS 283

Query: 255 NAVRQLEAMWCQVTNHFGGKIISSTIPVMFGRTLEVPQSCNGVARFTFEYLCGRPVGAAD 314
             V++    W               + V FGR + VP++   VA FTFE LCG P  AAD
Sbjct: 284 PEVKKALENWFLCYADEKDPAHQDEVEV-FGRKIIVPKASGNVAWFTFEQLCGEPKSAAD 342

Query: 315 YIAVAHNYHTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLFCSAASSIDDLFQGTE 374
           Y+++A  YH   +++IP +S+  +D   RFIT ID LY+ H  L  S+   + +++    
Sbjct: 343 YLSLASRYHVFIVSDIPKLSIESKDLIHRFITFIDALYDTHGKLILSSEVPVQEIYPTAP 402

Query: 375 EGTLFDLESFQFETEIEGGKLRRDVLAEGTVSS--GGAPAGIVSMLSGQEELFAFRR 429
              L                   D  A+G + S   GA  GI       EE+F F R
Sbjct: 403 SEVLSSTA---------------DPAAKGKIESHYHGAFGGI-------EEVFTFTR 437

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5TYS0|LCE1B_DANRE Lactation elevated protein 1 homolog B OS=Danio rerio GN=lace1b PE=2 SV=1

 Score =  168 bits (425), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 198/405 (48%), Gaps = 69/405 (17%)

Query: 38  TAPPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQ 97
           + P  P+G Y+YGNVG+GKTMLMD+FY   E   + ++R HF+  ML ++  +H+L    
Sbjct: 147 SKPHPPQGYYIYGNVGTGKTMLMDLFYSFVEN--RRKKRVHFNGFMLDVHRRIHKL---- 200

Query: 98  VAEKSLRSSISGWITNL-PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQR 156
             ++SL     G +T   P     ME   AEE                            
Sbjct: 201 --KQSLPKRRIGKMTMYDPIFPVAME--IAEE---------------------------- 228

Query: 157 GASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLV 216
              ++CFDE Q VD+   + L  +   L   G V+VATSNR P +L ++G+QR  F   +
Sbjct: 229 -TCLICFDEFQVVDIADAMILKQLFEGLFKCGVVVVATSNRPPEELYKNGLQRAAFVPFI 287

Query: 217 AKLEKHCEIIPIGSEVDYRRLIAQRSIDQVHYF--WPLDDNAVRQL-EAMWCQVTNHFGG 273
             L+++C I+ + + +D+R     +   +++Y    P  +NAV  L E +  +  +    
Sbjct: 288 GVLKEYCRIVSLDTGIDFRTR-EMKPAGRLYYISSEPDAENAVNALFEELAFRQNDVTRP 346

Query: 274 KIISSTIPVMFGRTLEVPQSCNGVARFTFEYLCGRPVGAADYIAVAHNYHTVFITNIPVM 333
           ++++       GR + + ++C  +A  +F+ LC +P+GA DY+ +A  + TV I N+P +
Sbjct: 347 RVLNVQ-----GREVTLSRTCGTIADCSFQELCEQPLGAGDYLEIARCFDTVIIRNVPYL 401

Query: 334 SMRIRDKARRFITLIDELYNHHCCLFCSAASSIDDLFQGTEEGTLFDLESFQFETEIEGG 393
            + ++D+ARRF TLID  Y+    +   A + +D L    ++G +              G
Sbjct: 402 QLGMKDQARRFTTLIDNFYDQKVRVVMLADAPLDRLL---DQGQM-------------TG 445

Query: 394 KLRRDVLAEGTVSSGGAPAGIVSMLSGQEELFAFRRAWFVTVSTL 438
           +  RD L    +      +  +++ +  EE+FAF+R    TVS L
Sbjct: 446 EEARDRLMLDELGLTDEASKRITLFTADEEIFAFQR----TVSRL 486

Danio rerio (taxid: 7955)

>sp|P32317|AFG1_YEAST Protein AFG1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AFG1 PE=1 SV=1

 Score =  163 bits (413), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 133/460 (28%), Positives = 211/460 (45%), Gaps = 78/460 (16%)

Query: 5   VRKNPENVEPGVGRWVSYLN------RERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTM 58
           V K P  V+  VG W++ L       + + + + V         P+G+YLYG+VG GKTM
Sbjct: 76  VVKTPNAVD-QVGGWLNGLKSVFSRGKPKNIGAYVDVSKIGNSIPRGVYLYGDVGCGKTM 134

Query: 59  LMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 118
           LMD+FY      +  ++R HFH+ M  +++  H + + Q   K L  +    I  +PF  
Sbjct: 135 LMDLFYTTIPNHLT-KKRIHFHQFMQYVHKRSHEIVREQNL-KELGDAKGKEIDTVPF-- 190

Query: 119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALS 178
                +AAE               +A+            + +LCFDE Q  DV   + L 
Sbjct: 191 -----LAAE---------------IAN-----------NSHVLCFDEFQVTDVADAMILR 219

Query: 179 GIVSRLLST--GTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRR 236
            +++ LLS   G VL ATSNR P +L  +G+QR+ F   +  ++   ++I + S  DYR+
Sbjct: 220 RLMTALLSDDYGVVLFATSNRHPDELYINGVQRQSFIPCIELIKHRTKVIFLNSPTDYRK 279

Query: 237 LIAQRSIDQVHYFWPLD--------------DNAVRQLEAMWCQVTNHFGGKIISSTIPV 282
           +   R +  V+YF P D              +  +++    + Q + H      S T+  
Sbjct: 280 I--PRPVSSVYYF-PSDTSIKYASKECKTRRETHIKEWYNYFAQAS-HTDDSTDSHTVHK 335

Query: 283 MF--------GRTLEVPQ-SCNGVARFTFEYLCGRPVGAADYIAVAHNYHTVFITNIPVM 333
            F        GR  +VP+ +   VA+FTF+ LCG P+ A DY+ +A N+    +T+IP +
Sbjct: 336 TFYDYPLTIWGREFKVPKCTPPRVAQFTFKQLCGEPLAAGDYLTLAKNFEAFIVTDIPYL 395

Query: 334 SMRIRDKARRFITLIDELYNHHCCLFCSAASSIDDLFQGTEEGTLFDLESFQFETEIEGG 393
           S+ +RD+ RRFIT +D +Y+    L  + A+    LF   E+     L  F+     +  
Sbjct: 396 SIYVRDEVRRFITFLDAVYDSGGKLATTGAADFSSLFVEPEQI----LNDFELRPTTKEP 451

Query: 394 KLRRDVLAEGTVSSGGAPAGIVS---MLSGQEELFAFRRA 430
                 + +  V   G    I     M +  EE FAF RA
Sbjct: 452 DSVDTGMVDEMVEKHGFSKEIAKKSQMFALDEERFAFARA 491

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P64612|YHCM_ECOLI Uncharacterized protein YhcM OS=Escherichia coli (strain K12) GN=yhcM PE=1 SV=1

 Score =  157 bits (397), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/330 (30%), Positives = 160/330 (48%), Gaps = 57/330 (17%)

Query: 44  KGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSL 103
           +GLY++G VG GKT LMD+FY +  G  + +QR HFH  ML+++E +             
Sbjct: 72  RGLYMWGGVGRGKTWLMDLFYQSLPG--ERKQRLHFHRFMLRVHEEL------------- 116

Query: 104 RSSISGWITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCF 163
            +++ G                            + L  +AD+F  +         +LCF
Sbjct: 117 -TALQG--------------------------QTDPLEIIADRFKAE-------TDVLCF 142

Query: 164 DEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHC 223
           DE    D+   + L G++  L + G  LVATSN  P +L ++G+QR  F   +  +++HC
Sbjct: 143 DEFFVSDITDAMLLGGLMKALFARGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHC 202

Query: 224 EIIPIGSEVDYRRLIAQRSIDQVH-YFWPLDDNAVRQLEAMWCQVTNHFGGKIISSTIPV 282
           +++ + + VDYR     R++ Q H +  PL D    Q++ +W  +    GGK  +S    
Sbjct: 203 DVMNVDAGVDYR----LRTLTQAHLWLSPLHDETRAQMDKLWLALA---GGKRENSPTLE 255

Query: 283 MFGRTLEVPQSCNGVARFTFEYLCGRPVGAADYIAVAHNYHTVFITNIPVMSMRIRDKAR 342
           +  R L      N     +F  LC       DYIA++  +HTV + ++PVM+  +  +AR
Sbjct: 256 INHRPLATMGVENQTLAVSFTTLCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEAR 315

Query: 343 RFITLIDELYNHHCCLFCSAASSIDDLFQG 372
           RFI L+DE Y  H  L  SA   + +++QG
Sbjct: 316 RFIALVDEFYERHVKLVVSAEVPLYEIYQG 345

Escherichia coli (strain K12) (taxid: 83333)

>sp|P64613|YHCM_ECO57 Uncharacterized protein YhcM OS=Escherichia coli O157:H7 GN=yhcM PE=3 SV=1

 Score =  157 bits (397), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/330 (30%), Positives = 160/330 (48%), Gaps = 57/330 (17%)

Query: 44  KGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSL 103
           +GLY++G VG GKT LMD+FY +  G  + +QR HFH  ML+++E +             
Sbjct: 72  RGLYMWGGVGRGKTWLMDLFYQSLPG--ERKQRLHFHRFMLRVHEEL------------- 116

Query: 104 RSSISGWITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCF 163
            +++ G                            + L  +AD+F  +         +LCF
Sbjct: 117 -TALQG--------------------------QTDPLEIIADRFKAE-------TDVLCF 142

Query: 164 DEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHC 223
           DE    D+   + L G++  L + G  LVATSN  P +L ++G+QR  F   +  +++HC
Sbjct: 143 DEFFVSDITDAMLLGGLMKALFARGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHC 202

Query: 224 EIIPIGSEVDYRRLIAQRSIDQVH-YFWPLDDNAVRQLEAMWCQVTNHFGGKIISSTIPV 282
           +++ + + VDYR     R++ Q H +  PL D    Q++ +W  +    GGK  +S    
Sbjct: 203 DVMNVDAGVDYR----LRTLTQAHLWLSPLHDETRAQMDKLWLALA---GGKRENSPTLE 255

Query: 283 MFGRTLEVPQSCNGVARFTFEYLCGRPVGAADYIAVAHNYHTVFITNIPVMSMRIRDKAR 342
           +  R L      N     +F  LC       DYIA++  +HTV + ++PVM+  +  +AR
Sbjct: 256 INHRPLATMGVENQTLAVSFTTLCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEAR 315

Query: 343 RFITLIDELYNHHCCLFCSAASSIDDLFQG 372
           RFI L+DE Y  H  L  SA   + +++QG
Sbjct: 316 RFIALVDEFYERHVKLVVSAEVPLYEIYQG 345

Escherichia coli O157:H7 (taxid: 83334)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	454
255548952	543	atpase n2b, putative [Ricinus communis]	0.944	0.790	0.829	0.0
225430251	605	PREDICTED: lactation elevated protein 1	0.936	0.702	0.837	0.0
224092448	602	predicted protein [Populus trichocarpa]	0.933	0.704	0.808	0.0
449437392	606	PREDICTED: lactation elevated protein 1-	0.936	0.701	0.807	0.0
449517802	561	PREDICTED: LOW QUALITY PROTEIN: lactatio	0.936	0.757	0.804	0.0
363807271	504	uncharacterized protein LOC100816565 [Gl	0.942	0.849	0.766	0.0
297821955	586	hypothetical protein ARALYDRAFT_481404 [	0.925	0.716	0.761	0.0
15224744	655	AFG1-like protein [Arabidopsis thaliana]	0.925	0.641	0.757	0.0
357119431	613	PREDICTED: lactation elevated protein 1-	0.936	0.693	0.731	0.0
218194126	613	hypothetical protein OsI_14358 [Oryza sa	0.936	0.693	0.717	0.0

>gi|255548952|ref|XP_002515532.1| atpase n2b, putative [Ricinus communis] gi|223545476|gb|EEF46981.1| atpase n2b, putative [Ricinus communis]

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/429 (82%), Positives = 391/429 (91%)

Query: 5   VRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFY 64
           +RK P+NVEPGVGRWVSYLNRERKLDS+VGR P APPAPKGLY+YGNVGSGKTMLMDMFY
Sbjct: 102 LRKKPKNVEPGVGRWVSYLNRERKLDSVVGRRPIAPPAPKGLYIYGNVGSGKTMLMDMFY 161

Query: 65  GATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVMEWV 124
           GATEGIVKHR+RFHFHEAML INEHMH++WK QV E+ L SSIS WI NLPFD KV EW+
Sbjct: 162 GATEGIVKHRRRFHFHEAMLNINEHMHKIWKKQVEEQCLESSISSWIMNLPFDLKVKEWL 221

Query: 125 AAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRL 184
           AAEEKYKQE Q+KNIL  VADKFLVD+ A Q+GAS+LCFDEIQTVDVFAIVALSGI+SRL
Sbjct: 222 AAEEKYKQEAQVKNILSTVADKFLVDRRAGQKGASVLCFDEIQTVDVFAIVALSGILSRL 281

Query: 185 LSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLIAQRSID 244
           L+TGTVLVATSNRAP DLNQDGMQREIF KLV+KLE+HCEI+ IGSE+DYRR IAQR  D
Sbjct: 282 LTTGTVLVATSNRAPNDLNQDGMQREIFLKLVSKLEEHCEIVLIGSEIDYRRFIAQRFED 341

Query: 245 QVHYFWPLDDNAVRQLEAMWCQVTNHFGGKIISSTIPVMFGRTLEVPQSCNGVARFTFEY 304
           QVHYFWPL+ NAV++ E +WCQ+T+  GG+I+S+TIPVMFGR LEVP+SCNG A+FTFEY
Sbjct: 342 QVHYFWPLESNAVKEFEKIWCQITDQLGGEIVSATIPVMFGRELEVPESCNGAAKFTFEY 401

Query: 305 LCGRPVGAADYIAVAHNYHTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLFCSAAS 364
           LCGRP GAADYIAVA +YHTVFI+ IP MSMRIRDKARRFITLIDELYNHHCCLFCSAAS
Sbjct: 402 LCGRPRGAADYIAVAKSYHTVFISEIPEMSMRIRDKARRFITLIDELYNHHCCLFCSAAS 461

Query: 365 SIDDLFQGTEEGTLFDLESFQFETEIEGGKLRRDVLAEGTVSSGGAPAGIVSMLSGQEEL 424
           SIDDLFQGTEEGTLFDLESFQFETEIEGGKLRRDVL+EG+V SGGAP GIVSMLSGQEE+
Sbjct: 462 SIDDLFQGTEEGTLFDLESFQFETEIEGGKLRRDVLSEGSVGSGGAPTGIVSMLSGQEEM 521

Query: 425 FAFRRAWFV 433
           FAFRRA F 
Sbjct: 522 FAFRRAGFT 530

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430251|ref|XP_002282599.1| PREDICTED: lactation elevated protein 1 [Vitis vinifera] gi|296082020|emb|CBI21025.3| unnamed protein product [Vitis vinifera]

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/425 (83%), Positives = 394/425 (92%)

Query: 6   RKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYG 65
           RK P+NVEPGVG+WVSYLNRE+KLD+++GR PT PPAPKGLYLYG+VGSGKTMLMDMFY 
Sbjct: 137 RKKPDNVEPGVGKWVSYLNREKKLDTVIGRRPTPPPAPKGLYLYGSVGSGKTMLMDMFYS 196

Query: 66  ATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVMEWVA 125
           ATEGIVKHR+RFHFHEAML+INEHMH++WKNQV EKSL+S+IS WI NLPFD+KV EW+A
Sbjct: 197 ATEGIVKHRRRFHFHEAMLEINEHMHKVWKNQVEEKSLQSNISSWIMNLPFDTKVKEWLA 256

Query: 126 AEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLL 185
           AEE+YK EVQMKNILPAVADKFLVD+  DQRGASILCFDEIQTVDVFA+VALSGI+SRLL
Sbjct: 257 AEERYKHEVQMKNILPAVADKFLVDREMDQRGASILCFDEIQTVDVFAVVALSGIISRLL 316

Query: 186 STGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLIAQRSIDQ 245
           STGTVLVATSNRAP DLNQDGMQ+EIF KLVAKLE+HCE + IG+E+DYRRLIAQRSI++
Sbjct: 317 STGTVLVATSNRAPNDLNQDGMQKEIFLKLVAKLERHCENVLIGNEIDYRRLIAQRSINK 376

Query: 246 VHYFWPLDDNAVRQLEAMWCQVTNHFGGKIISSTIPVMFGRTLEVPQSCNGVARFTFEYL 305
            HYFWPLD  A ++ E MW +V N  GGK+ISSTI VMFGRTLEVP+SCNGVARF F+YL
Sbjct: 377 AHYFWPLDGIAFKKFEEMWHEVINQSGGKVISSTILVMFGRTLEVPESCNGVARFKFDYL 436

Query: 306 CGRPVGAADYIAVAHNYHTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLFCSAASS 365
           CGRPVGAADYIAVA NYHTVFI++IPVMSMRIRDKARRFITLIDELYNHHCCLFCSAASS
Sbjct: 437 CGRPVGAADYIAVAKNYHTVFISDIPVMSMRIRDKARRFITLIDELYNHHCCLFCSAASS 496

Query: 366 IDDLFQGTEEGTLFDLESFQFETEIEGGKLRRDVLAEGTVSSGGAPAGIVSMLSGQEELF 425
           IDDLFQGTEEGTLFDLESFQFETE EGGKLRR+VLAEG V SGGAPAGI+S+LSGQEE+F
Sbjct: 497 IDDLFQGTEEGTLFDLESFQFETETEGGKLRRNVLAEGNVGSGGAPAGIISLLSGQEEMF 556

Query: 426 AFRRA 430
           AFRRA
Sbjct: 557 AFRRA 561

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092448|ref|XP_002309615.1| predicted protein [Populus trichocarpa] gi|222855591|gb|EEE93138.1| predicted protein [Populus trichocarpa]

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/424 (80%), Positives = 381/424 (89%)

Query: 7   KNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGA 66
           K    +EPGVGRWVSYLNRERKLDSLVGR P+ PPAPKGLY+YGNVGSGKTMLMDMFY A
Sbjct: 135 KKGAEIEPGVGRWVSYLNRERKLDSLVGRRPSVPPAPKGLYIYGNVGSGKTMLMDMFYSA 194

Query: 67  TEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVMEWVAA 126
           TEG+ KHR RFHFHEAML IN HMH++WKNQV  KSL+S+IS WITNLPFD KV EW+ A
Sbjct: 195 TEGMAKHRIRFHFHEAMLNINAHMHKIWKNQVEGKSLQSNISSWITNLPFDMKVKEWLVA 254

Query: 127 EEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLLS 186
           EE+YKQ+VQMKNIL AVAD+FL+D+ AD+RGASILCFDEIQTVDVFAIVALSGI+SRLL+
Sbjct: 255 EERYKQDVQMKNILLAVADEFLMDKQADERGASILCFDEIQTVDVFAIVALSGILSRLLT 314

Query: 187 TGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLIAQRSIDQV 246
           TGTVLVATSNRAP +LNQDGMQR+IFQKLV+KLE+HCEII IGSE+DYRR IAQRS DQ 
Sbjct: 315 TGTVLVATSNRAPRELNQDGMQRDIFQKLVSKLEEHCEIILIGSEIDYRRFIAQRSNDQA 374

Query: 247 HYFWPLDDNAVRQLEAMWCQVTNHFGGKIISSTIPVMFGRTLEVPQSCNGVARFTFEYLC 306
           +YFWPL+ +A+ + E MWCQVTN  GG+I S TIPVMFGR L+VP+SCNGVA+FTFEYLC
Sbjct: 375 NYFWPLESSALMEFEKMWCQVTNQLGGQITSETIPVMFGRVLDVPESCNGVAKFTFEYLC 434

Query: 307 GRPVGAADYIAVAHNYHTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLFCSAASSI 366
           GR VGAADYIA+A NYHTVFI++IP+MSM  RDKARRFITLIDELYNHHCCLFCSAASSI
Sbjct: 435 GRTVGAADYIALAKNYHTVFISDIPLMSMENRDKARRFITLIDELYNHHCCLFCSAASSI 494

Query: 367 DDLFQGTEEGTLFDLESFQFETEIEGGKLRRDVLAEGTVSSGGAPAGIVSMLSGQEELFA 426
           DDLFQGTEEGT FDLESFQFETE EGGKLR +VLAEG V SGG P+GIVSMLSGQEE+FA
Sbjct: 495 DDLFQGTEEGTHFDLESFQFETETEGGKLRTNVLAEGNVGSGGVPSGIVSMLSGQEEMFA 554

Query: 427 FRRA 430
           FRRA
Sbjct: 555 FRRA 558

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437392|ref|XP_004136476.1| PREDICTED: lactation elevated protein 1-like [Cucumis sativus]

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/425 (80%), Positives = 380/425 (89%)

Query: 6   RKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYG 65
           RK  EN+EPGVG+WVSYLNRE+KLDSLVGRCP+AP AP+GLY+YGNVGSGKTMLMDMF+ 
Sbjct: 137 RKKSENIEPGVGKWVSYLNREKKLDSLVGRCPSAPHAPRGLYIYGNVGSGKTMLMDMFFN 196

Query: 66  ATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVMEWVA 125
           ATEGIVKHRQR+HFHEAMLKINE MH++WKNQV EKS +SSIS WI NLPFD+KV EW+A
Sbjct: 197 ATEGIVKHRQRYHFHEAMLKINEDMHKIWKNQVREKSSQSSISSWIMNLPFDTKVKEWLA 256

Query: 126 AEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLL 185
            EEKYKQEVQMKNILPAVADKFLVDQ A   GASILCFDEIQTVDVFAIVALSGI+SRLL
Sbjct: 257 GEEKYKQEVQMKNILPAVADKFLVDQQAGHVGASILCFDEIQTVDVFAIVALSGIISRLL 316

Query: 186 STGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLIAQRSIDQ 245
           STGTVLVATSNRAP DLNQDGMQ++IFQK V KLE+HCE + IGSE+DYRR IAQRS DQ
Sbjct: 317 STGTVLVATSNRAPNDLNQDGMQKDIFQKFVIKLEEHCEFVLIGSEIDYRRFIAQRSFDQ 376

Query: 246 VHYFWPLDDNAVRQLEAMWCQVTNHFGGKIISSTIPVMFGRTLEVPQSCNGVARFTFEYL 305
           VHYFWPLD  ++R+ E MW ++T+   G+I S TI VMFGR LEVP+SCNGVARF F++L
Sbjct: 377 VHYFWPLDCTSMRKFENMWVEITSQLEGQITSETIRVMFGRKLEVPESCNGVARFAFDFL 436

Query: 306 CGRPVGAADYIAVAHNYHTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLFCSAASS 365
           CG+PVGAADYIA+A NYHTVFI+NIP+MSMRIRDKARRFITLIDELYNHHCCLFC AA+S
Sbjct: 437 CGQPVGAADYIALAKNYHTVFISNIPIMSMRIRDKARRFITLIDELYNHHCCLFCLAATS 496

Query: 366 IDDLFQGTEEGTLFDLESFQFETEIEGGKLRRDVLAEGTVSSGGAPAGIVSMLSGQEELF 425
           I+DLFQGTEEG LFDLESFQFETE EGGKLRR+VL EG V S GAP  IVSMLSGQEE+F
Sbjct: 497 IEDLFQGTEEGALFDLESFQFETEAEGGKLRRNVLVEGNVGSVGAPTAIVSMLSGQEEMF 556

Query: 426 AFRRA 430
           AFRRA
Sbjct: 557 AFRRA 561

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517802|ref|XP_004165933.1| PREDICTED: LOW QUALITY PROTEIN: lactation elevated protein 1-like, partial [Cucumis sativus]

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/425 (80%), Positives = 379/425 (89%)

Query: 6   RKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYG 65
           RK  EN+EPGVG+WVSYLNRE+KLDSLVGRCP+AP AP+GLY+YGNVGSGKTMLMDMF+ 
Sbjct: 137 RKKSENIEPGVGKWVSYLNREKKLDSLVGRCPSAPHAPRGLYIYGNVGSGKTMLMDMFFN 196

Query: 66  ATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVMEWVA 125
           ATEGIVKHRQR+HFHEAMLKINE MH++WKNQV EKS +SSIS WI NLPFD+KV EW+A
Sbjct: 197 ATEGIVKHRQRYHFHEAMLKINEDMHKIWKNQVREKSSQSSISSWIMNLPFDTKVKEWLA 256

Query: 126 AEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLL 185
            EEKYKQE QMKNILPAVADKFLVDQ A   GASILCFDEIQTVDVFAIVALSGI+SRLL
Sbjct: 257 GEEKYKQEXQMKNILPAVADKFLVDQQAGHVGASILCFDEIQTVDVFAIVALSGIISRLL 316

Query: 186 STGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLIAQRSIDQ 245
           STGTVLVATSNRAP DLNQDGMQ++IFQK V KLE+HCE + IGSE+DYRR IAQRS DQ
Sbjct: 317 STGTVLVATSNRAPNDLNQDGMQKDIFQKFVIKLEEHCEFVLIGSEIDYRRFIAQRSFDQ 376

Query: 246 VHYFWPLDDNAVRQLEAMWCQVTNHFGGKIISSTIPVMFGRTLEVPQSCNGVARFTFEYL 305
           VHYFWPLD  ++R+ E MW ++T+   G+I S TI VMFGR LEVP+SCNGVARF F++L
Sbjct: 377 VHYFWPLDCTSMRKFENMWVEITSQLEGQITSETIRVMFGRKLEVPESCNGVARFAFDFL 436

Query: 306 CGRPVGAADYIAVAHNYHTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLFCSAASS 365
           CG+PVGAADYIA+A NYHTVFI+NIP+MSMRIRDKARRFITLIDELYNHHCCLFC AA+S
Sbjct: 437 CGQPVGAADYIALAKNYHTVFISNIPIMSMRIRDKARRFITLIDELYNHHCCLFCLAATS 496

Query: 366 IDDLFQGTEEGTLFDLESFQFETEIEGGKLRRDVLAEGTVSSGGAPAGIVSMLSGQEELF 425
           I+DLFQGTEEG LFDLESFQFETE EGGKLRR+VL EG V S GAP  IVSMLSGQEE+F
Sbjct: 497 IEDLFQGTEEGALFDLESFQFETEAEGGKLRRNVLVEGNVGSVGAPTAIVSMLSGQEEMF 556

Query: 426 AFRRA 430
           AFRRA
Sbjct: 557 AFRRA 561

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807271|ref|NP_001242617.1| uncharacterized protein LOC100816565 [Glycine max] gi|255634945|gb|ACU17831.1| unknown [Glycine max]

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/428 (76%), Positives = 385/428 (89%)

Query: 3   VSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDM 62
           ++ RK P+N+E GVG+WVSYL RE+KLDSLVG  PTAPPAPKGLY+YGNVGSGKTMLMDM
Sbjct: 44  LTERKRPKNMESGVGKWVSYLKREKKLDSLVGHRPTAPPAPKGLYIYGNVGSGKTMLMDM 103

Query: 63  FYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVME 122
           FY AT+GIVKHR+R+HFHEAML+INE MH++WK+Q+ EK L+S+I+GWI +LPFD+K  E
Sbjct: 104 FYSATKGIVKHRRRYHFHEAMLRINEQMHKIWKSQIEEKPLQSTIAGWIMSLPFDTKAKE 163

Query: 123 WVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVS 182
           W+AAEE+YKQEVQMKNILPAVAD F +D   +++GASILCFDEIQTVDVFAIVALSGI+S
Sbjct: 164 WLAAEERYKQEVQMKNILPAVADMFFLDGEENEKGASILCFDEIQTVDVFAIVALSGILS 223

Query: 183 RLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLIAQRS 242
           RLLS+GT++VATSNRAP DLN+ GMQ+EIFQKLV+KLE+HCE + IGSE+DYRR IAQ+S
Sbjct: 224 RLLSSGTIIVATSNRAPKDLNEAGMQKEIFQKLVSKLEEHCEKVLIGSEIDYRRFIAQKS 283

Query: 243 IDQVHYFWPLDDNAVRQLEAMWCQVTNHFGGKIISSTIPVMFGRTLEVPQSCNGVARFTF 302
            +QVHYFWP++  A+ + E  W  VT  FGG+IIS+TI VMFGRTLEVPQS +GVARFTF
Sbjct: 284 ENQVHYFWPIEKEAMNEFEKKWHDVTGRFGGRIISNTISVMFGRTLEVPQSFDGVARFTF 343

Query: 303 EYLCGRPVGAADYIAVAHNYHTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLFCSA 362
           EYLCGRP+GAADYIAVA N+HTVFI++IPVMSMRIRDKARRFITLIDELYNHHCCL C A
Sbjct: 344 EYLCGRPLGAADYIAVAENFHTVFISDIPVMSMRIRDKARRFITLIDELYNHHCCLCCLA 403

Query: 363 ASSIDDLFQGTEEGTLFDLESFQFETEIEGGKLRRDVLAEGTVSSGGAPAGIVSMLSGQE 422
           +SSID+LFQGTEEGTLFDLESFQFETE EGG+LRR+VLAEG VSSGGAP+GI S+L GQE
Sbjct: 404 SSSIDELFQGTEEGTLFDLESFQFETETEGGRLRRNVLAEGRVSSGGAPSGITSILFGQE 463

Query: 423 ELFAFRRA 430
           E+FAF+RA
Sbjct: 464 EIFAFQRA 471

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821955|ref|XP_002878860.1| hypothetical protein ARALYDRAFT_481404 [Arabidopsis lyrata subsp. lyrata] gi|297324699|gb|EFH55119.1| hypothetical protein ARALYDRAFT_481404 [Arabidopsis lyrata subsp. lyrata]

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/420 (76%), Positives = 368/420 (87%)

Query: 11  NVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATEGI 70
           NVEPGVG+WVSYLNRERKLDS+VG  P  PPAPKGLY+YGNVG GKTMLMDMF+GAT+GI
Sbjct: 140 NVEPGVGKWVSYLNRERKLDSIVGSRPAVPPAPKGLYIYGNVGCGKTMLMDMFFGATDGI 199

Query: 71  VKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVMEWVAAEEKY 130
           ++HRQRFHFHEAMLKINE MH+ WK   AEKS + SIS WI NLP D KV EW+A EE Y
Sbjct: 200 IRHRQRFHFHEAMLKINEQMHKYWKENGAEKSSQYSISSWIMNLPVDEKVKEWLAGEEFY 259

Query: 131 KQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTV 190
           KQ++QMK+ILPAVADKFLVDQ + ++GASILCFDEIQTVDVFAIVALSGI+SRLL+TGTV
Sbjct: 260 KQQLQMKHILPAVADKFLVDQQSSKKGASILCFDEIQTVDVFAIVALSGIMSRLLATGTV 319

Query: 191 LVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLIAQRSIDQVHYFW 250
           LVATSNRAP +LNQDGMQ+EIF K V+KLEKHCEII IGSEVDYRR+ AQ S++ VHY W
Sbjct: 320 LVATSNRAPRELNQDGMQKEIFDKFVSKLEKHCEIISIGSEVDYRRVAAQNSVENVHYLW 379

Query: 251 PLDDNAVRQLEAMWCQVTNHFGGKIISSTIPVMFGRTLEVPQSCNGVARFTFEYLCGRPV 310
           PL+   + + E MW Q+T+ +GG+I S+T+PVMFGRT+EVPQSCNGVARFTFEYLCGRPV
Sbjct: 380 PLNKAVLEEFEKMWLQITDQYGGEITSATLPVMFGRTVEVPQSCNGVARFTFEYLCGRPV 439

Query: 311 GAADYIAVAHNYHTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLFCSAASSIDDLF 370
           GAADYIAVA NYHT+FI++IP MSM IRDKARRFITL+DELYNHHCCL  SA + ID+LF
Sbjct: 440 GAADYIAVAKNYHTIFISDIPAMSMEIRDKARRFITLVDELYNHHCCLVSSAETPIDELF 499

Query: 371 QGTEEGTLFDLESFQFETEIEGGKLRRDVLAEGTVSSGGAPAGIVSMLSGQEELFAFRRA 430
           QGT EGTLFDLESFQFETE E  +LRRDVLAEG++S+ G+P+ IVSMLSG+EE+FAF RA
Sbjct: 500 QGTAEGTLFDLESFQFETETEDSRLRRDVLAEGSISAAGSPSSIVSMLSGEEEMFAFARA 559

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224744|ref|NP_180123.1| AFG1-like protein [Arabidopsis thaliana] gi|4432864|gb|AAD20712.1| hypothetical protein [Arabidopsis thaliana] gi|330252619|gb|AEC07713.1| AFG1-like protein [Arabidopsis thaliana]

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/420 (75%), Positives = 369/420 (87%)

Query: 11  NVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATEGI 70
           NVEPGVG+WVSYLNRERKLDS+VG  P  PPAPKGLY+YGNVG GKTMLMDMFYGAT+GI
Sbjct: 209 NVEPGVGKWVSYLNRERKLDSIVGSRPAVPPAPKGLYIYGNVGCGKTMLMDMFYGATDGI 268

Query: 71  VKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVMEWVAAEEKY 130
           ++HRQRFHFHEAMLKINE MH+ WK   AEK ++ SIS WI NLP D KV EW+A EE Y
Sbjct: 269 IRHRQRFHFHEAMLKINEQMHKYWKENGAEKPMQYSISSWIMNLPVDEKVKEWLAGEEFY 328

Query: 131 KQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTV 190
           KQ++QMK+ILPAVADKFLVDQ + ++GASILCFDEIQTVDVFAIVALSGI+SRLL+TGTV
Sbjct: 329 KQQLQMKHILPAVADKFLVDQQSSKKGASILCFDEIQTVDVFAIVALSGIMSRLLTTGTV 388

Query: 191 LVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLIAQRSIDQVHYFW 250
           LVATSNRAP +LNQDGMQ+EIF K ++KLEKHCEII IGSEVDYRR+ A+ S + VHY W
Sbjct: 389 LVATSNRAPRELNQDGMQKEIFDKFISKLEKHCEIISIGSEVDYRRVAAKNSAENVHYLW 448

Query: 251 PLDDNAVRQLEAMWCQVTNHFGGKIISSTIPVMFGRTLEVPQSCNGVARFTFEYLCGRPV 310
           PL+D  + + E MW QVT+ +GG+I S+T+PVMFGRT+EVP+SC+GVARFTFEYLCGRPV
Sbjct: 449 PLNDAVLEEFEKMWRQVTDQYGGEITSATLPVMFGRTVEVPESCSGVARFTFEYLCGRPV 508

Query: 311 GAADYIAVAHNYHTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLFCSAASSIDDLF 370
           GAADYIAVA NYHT+FI++IP MSM IRDKARRFITL+DELYNHHCCL  SA ++ID+LF
Sbjct: 509 GAADYIAVAKNYHTIFISDIPAMSMEIRDKARRFITLVDELYNHHCCLVSSAETAIDELF 568

Query: 371 QGTEEGTLFDLESFQFETEIEGGKLRRDVLAEGTVSSGGAPAGIVSMLSGQEELFAFRRA 430
           QGT EGTLFDLESFQFETE E  +LRRDVLAEG++S+ G+P+ IVSMLSG+EE+FAF RA
Sbjct: 569 QGTAEGTLFDLESFQFETETEDSRLRRDVLAEGSISAAGSPSSIVSMLSGEEEMFAFARA 628

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357119431|ref|XP_003561443.1| PREDICTED: lactation elevated protein 1-like [Brachypodium distachyon]

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/425 (73%), Positives = 357/425 (84%)

Query: 6   RKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYG 65
           RK   N+EPGVGRWVSYLNRE+KLD+LVG+ P AP APKGLYLYGNVGSGKTMLMDMFYG
Sbjct: 144 RKRRGNLEPGVGRWVSYLNREKKLDTLVGQKPVAPVAPKGLYLYGNVGSGKTMLMDMFYG 203

Query: 66  ATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVMEWVA 125
           ATEG++KHR+RFHFHEAML+I+EHMH +WK +   +S  SS   WI+ LPFD+K+ EW+ 
Sbjct: 204 ATEGVIKHRRRFHFHEAMLEIHEHMHDVWKTRDDNRSTHSSAFSWISGLPFDAKIKEWLL 263

Query: 126 AEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLL 185
            EEKYKQE Q K+IL AVADKFLVD+ AD+ GASILCFDEIQT+DVFA+VALSGI+SRLL
Sbjct: 264 GEEKYKQETQQKHILLAVADKFLVDRQADKCGASILCFDEIQTIDVFAVVALSGILSRLL 323

Query: 186 STGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLIAQRSIDQ 245
           STGTVLVATSN+AP DLNQDGMQREIF +L++KL++ C  I +G+E DYRRLI   S  Q
Sbjct: 324 STGTVLVATSNKAPEDLNQDGMQREIFLELLSKLDETCNKILVGTETDYRRLIPTDSSTQ 383

Query: 246 VHYFWPLDDNAVRQLEAMWCQVTNHFGGKIISSTIPVMFGRTLEVPQSCNGVARFTFEYL 305
           +HYFWP+  ++    EAMW  VTN  G  I + TIPVMFGR+LE+PQSCNGVARF FEYL
Sbjct: 384 IHYFWPITSDSRSMYEAMWHDVTNQAGRNITAVTIPVMFGRSLEIPQSCNGVARFDFEYL 443

Query: 306 CGRPVGAADYIAVAHNYHTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLFCSAASS 365
           CGRPVGAADYIA+A NYHT+FI++IP MSM+IRDKARRFITLIDE+YNHHC L C A SS
Sbjct: 444 CGRPVGAADYIAIARNYHTIFISDIPAMSMKIRDKARRFITLIDEMYNHHCRLICLAVSS 503

Query: 366 IDDLFQGTEEGTLFDLESFQFETEIEGGKLRRDVLAEGTVSSGGAPAGIVSMLSGQEELF 425
           IDDLFQGTEEG LFDLESFQFETE EG KLRRDV AEG V  G +  G+VSMLSGQEE+F
Sbjct: 504 IDDLFQGTEEGPLFDLESFQFETEAEGTKLRRDVSAEGNVGVGPSTTGLVSMLSGQEEMF 563

Query: 426 AFRRA 430
           AFRRA
Sbjct: 564 AFRRA 568

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218194126|gb|EEC76553.1| hypothetical protein OsI_14358 [Oryza sativa Indica Group]

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/425 (71%), Positives = 358/425 (84%)

Query: 6   RKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYG 65
           RK   N+EPGVG+WVSYLNRE+KLD+LVG+ P AP APKG+YLYGNVGSGKTMLMDMFYG
Sbjct: 146 RKRRGNIEPGVGKWVSYLNREKKLDTLVGQKPVAPIAPKGIYLYGNVGSGKTMLMDMFYG 205

Query: 66  ATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVMEWVA 125
           ATEG++KHR+RFHFHEAML+I++HMH +WK +  +KS+ SS   WI++LPFD K  EW+ 
Sbjct: 206 ATEGLIKHRRRFHFHEAMLEIHDHMHDVWKRRDEDKSIESSAFSWISSLPFDGKTKEWLI 265

Query: 126 AEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLL 185
            EEKYKQ  Q K+IL AVADKFLVD+ A++ GASILCFDEIQT+DVFA+VALSGI+SRLL
Sbjct: 266 GEEKYKQNTQQKHILLAVADKFLVDRQANKSGASILCFDEIQTIDVFAVVALSGILSRLL 325

Query: 186 STGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLIAQRSIDQ 245
           STGTVLV+TSN+AP DLNQDGMQREIF  L++KL+++C  I +G+E DYRRLI    + Q
Sbjct: 326 STGTVLVSTSNKAPEDLNQDGMQREIFLDLLSKLDENCNKILVGTETDYRRLIPTDGLTQ 385

Query: 246 VHYFWPLDDNAVRQLEAMWCQVTNHFGGKIISSTIPVMFGRTLEVPQSCNGVARFTFEYL 305
           +HYFWPL  +     EAMW  +T   GG IIS TIPVMFGR LE+P+SCNGVARF FEYL
Sbjct: 386 IHYFWPLTSDIRSMYEAMWHDITRQTGGNIISVTIPVMFGRYLEIPKSCNGVARFDFEYL 445

Query: 306 CGRPVGAADYIAVAHNYHTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLFCSAASS 365
           CGRPVGAADYIA+A NYHT+FI++IP MSM+IRDKARRFITLIDELYNHHC L C AASS
Sbjct: 446 CGRPVGAADYIAIARNYHTIFISDIPAMSMKIRDKARRFITLIDELYNHHCRLVCLAASS 505

Query: 366 IDDLFQGTEEGTLFDLESFQFETEIEGGKLRRDVLAEGTVSSGGAPAGIVSMLSGQEELF 425
           IDDLFQGT+EG LFDLESFQFE E EG KLRRDVLAEG V +  +P G+V++LSGQEE+F
Sbjct: 506 IDDLFQGTDEGPLFDLESFQFEGEAEGAKLRRDVLAEGNVGAAPSPTGLVAILSGQEEMF 565

Query: 426 AFRRA 430
           AFRRA
Sbjct: 566 AFRRA 570

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	454
TAIR|locus:2040050	655	AT2G25530 [Arabidopsis thalian	0.925	0.641	0.757	7.3e-178
MGI|MGI:2148801	480	Lace1 "lactation elevated 1" [	0.453	0.429	0.386	4.1e-52
UNIPROTKB|E1C0S7	493	LACE1 "Uncharacterized protein	0.550	0.507	0.36	9.9e-52
RGD|1561501	480	Lace1 "lactation elevated 1" [	0.462	0.437	0.370	2.8e-51
UNIPROTKB|F1PD84	480	LACE1 "Uncharacterized protein	0.550	0.520	0.356	3.3e-51
UNIPROTKB|E1BQ18	480	LACE1 "Uncharacterized protein	0.550	0.520	0.349	1.4e-50
UNIPROTKB|Q8WV93	481	LACE1 "Lactation elevated prot	0.550	0.519	0.345	9.8e-50
DICTYBASE|DDB_G0292852	527	DDB_G0292852 "putative ATPase"	0.471	0.406	0.360	5.4e-48
POMBASE|SPBC115.02c	454	SPBC115.02c "AFG1 family mitoc	0.458	0.458	0.363	6e-46
ZFIN|ZDB-GENE-091006-2	471	lace1a "lactation elevated 1a"	0.559	0.539	0.330	9.7e-46

TAIR|locus:2040050 AT2G25530 [Arabidopsis thaliana (taxid:3702)]

 Score = 1727 (613.0 bits), Expect = 7.3e-178, P = 7.3e-178
 Identities = 318/420 (75%), Positives = 369/420 (87%)

Query:    11 NVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATEGI 70
             NVEPGVG+WVSYLNRERKLDS+VG  P  PPAPKGLY+YGNVG GKTMLMDMFYGAT+GI
Sbjct:   209 NVEPGVGKWVSYLNRERKLDSIVGSRPAVPPAPKGLYIYGNVGCGKTMLMDMFYGATDGI 268

Query:    71 VKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVMEWVAAEEKY 130
             ++HRQRFHFHEAMLKINE MH+ WK   AEK ++ SIS WI NLP D KV EW+A EE Y
Sbjct:   269 IRHRQRFHFHEAMLKINEQMHKYWKENGAEKPMQYSISSWIMNLPVDEKVKEWLAGEEFY 328

Query:   131 KQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTV 190
             KQ++QMK+ILPAVADKFLVDQ + ++GASILCFDEIQTVDVFAIVALSGI+SRLL+TGTV
Sbjct:   329 KQQLQMKHILPAVADKFLVDQQSSKKGASILCFDEIQTVDVFAIVALSGIMSRLLTTGTV 388

Query:   191 LVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLIAQRSIDQVHYFW 250
             LVATSNRAP +LNQDGMQ+EIF K ++KLEKHCEII IGSEVDYRR+ A+ S + VHY W
Sbjct:   389 LVATSNRAPRELNQDGMQKEIFDKFISKLEKHCEIISIGSEVDYRRVAAKNSAENVHYLW 448

Query:   251 PLDDNAVRQLEAMWCQVTNHFGGKIISSTIPVMFGRTLEVPQSCNGVARFTFEYLCGRPV 310
             PL+D  + + E MW QVT+ +GG+I S+T+PVMFGRT+EVP+SC+GVARFTFEYLCGRPV
Sbjct:   449 PLNDAVLEEFEKMWRQVTDQYGGEITSATLPVMFGRTVEVPESCSGVARFTFEYLCGRPV 508

Query:   311 GAADYIAVAHNYHTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLFCSAASSIDDLF 370
             GAADYIAVA NYHT+FI++IP MSM IRDKARRFITL+DELYNHHCCL  SA ++ID+LF
Sbjct:   509 GAADYIAVAKNYHTIFISDIPAMSMEIRDKARRFITLVDELYNHHCCLVSSAETAIDELF 568

Query:   371 QGTEEGTLFDLESFQFETEIEGGKLRRDVLAEGTVSSGGAPAGIVSMLSGQEELFAFRRA 430
             QGT EGTLFDLESFQFETE E  +LRRDVLAEG++S+ G+P+ IVSMLSG+EE+FAF RA
Sbjct:   569 QGTAEGTLFDLESFQFETETEDSRLRRDVLAEGSISAAGSPSSIVSMLSGEEEMFAFARA 628

GO:0005524 "ATP binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016887 "ATPase activity" evidence=ISS

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

MGI|MGI:2148801 Lace1 "lactation elevated 1" [Mus musculus (taxid:10090)]

 Score = 361 (132.1 bits), Expect = 4.1e-52, Sum P(3) = 4.1e-52
 Identities = 83/215 (38%), Positives = 122/215 (56%)

Query:   159 SILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAK 218
             S+LCFDE Q  D+   + L  +   L   G V+VATSNR P DL ++G+QR  F   +A 
Sbjct:   208 SLLCFDEFQVTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANFVPFIAV 267

Query:   219 LEKHCEIIPIGSEVDYRRLIAQRSIDQVHYFWPLDDNAVRQLEAMWCQVTNHFGGKIISS 278
             L+++C+ + + S VDYR+    R +      + L   A   +EA+  ++ +    K    
Sbjct:   268 LKEYCDTLQLDSGVDYRK----RELAPAGKLYYLTSEA--DVEAVVDKLFDELAQKQNDL 321

Query:   279 TIPVMF---GRTLEVPQSCNGVARFTFEYLCGRPVGAADYIAVAHNYHTVFITNIPVMSM 335
             T P +    GR L + ++C  VA  TFE LC RP+GA+DY+ ++ N+ TV I NIP  S+
Sbjct:   322 TSPRILKVQGRELRLNKACGSVADCTFEELCERPLGASDYLELSKNFDTVIIRNIPQFSL 381

Query:   336 RIRDKARRFITLIDELYNHHCCLFCSAASSIDDLF 370
               R +ARRFITLID  Y+    + CSA++ I  LF
Sbjct:   382 AKRTQARRFITLIDNFYDFKVRIICSASAPISSLF 416

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1C0S7 LACE1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 408 (148.7 bits), Expect = 9.9e-52, Sum P(2) = 9.9e-52
 Identities = 99/275 (36%), Positives = 155/275 (56%)

Query:   158 ASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVA 217
             A +LCFDE Q  D+   + L  +   L   G V+VATSNR P DL ++G+QR  F   +A
Sbjct:   217 ACLLCFDEFQVTDIADAMILKQLFENLFQNGVVVVATSNRPPEDLYKNGLQRANFVPFIA 276

Query:   218 KLEKHCEIIPIGSEVDYRRLIAQRSIDQVHYFWPLDDNAVRQLEAMWCQVTNHFGGKIIS 277
              L+K+C  + + S +DYR+ +   +  +++Y   L   A   +EA+  ++ +    K   
Sbjct:   277 VLKKYCSTVQLDSGIDYRKRVLPAA-GKLYY---LTSEA--DVEAVMDKLFDELAQKQND 330

Query:   278 STIPVMF---GRTLEVPQSCNGVARFTFEYLCGRPVGAADYIAVAHNYHTVFITNIPVMS 334
              T P +    GR L + ++C  +A FTFE LC RP+GA+DY+ ++ ++ TVF+ +IP ++
Sbjct:   331 LTRPRILKVQGRELRLNKACGTIADFTFEELCDRPLGASDYLEISKHFDTVFVRDIPPLT 390

Query:   335 MRIRDKARRFITLIDELYNHHCCLFCSAASSIDDLFQGTEEGTLFDLESFQFETEIEGGK 394
             M  R +ARRFITLID  Y H   + CSAA+ +  LF   E G++          E+E  +
Sbjct:   391 MAKRTQARRFITLIDTFYEHKVRIICSAATPLQSLFV-VEAGSI----------ELEDSR 439

Query:   395 LRRDVLAEGTVSSGGAPAGIVSMLSGQEELFAFRR 429
             +  D L     S+ G     +SM +G+EE+FAF+R
Sbjct:   440 VLMDDLDLSQDSAKG-----LSMFTGEEEIFAFQR 469

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

RGD|1561501 Lace1 "lactation elevated 1" [Rattus norvegicus (taxid:10116)]

 Score = 349 (127.9 bits), Expect = 2.8e-51, Sum P(3) = 2.8e-51
 Identities = 79/213 (37%), Positives = 120/213 (56%)

Query:   158 ASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVA 217
             AS+LCFDE Q  D+   + L  +   L   G V+VATSNR P DL ++G+QR  F   +A
Sbjct:   207 ASLLCFDEFQVTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANFVPFIA 266

Query:   218 KLEKHCEIIPIGSEVDYRRLIAQRSIDQVHYFWPLDDNAVRQLEAMWCQVTNHFGGKIIS 277
              L+++C  + + S VDYR+     +  +++Y     D     ++ ++ ++       + S
Sbjct:   267 VLKEYCNTVQLDSGVDYRKRELTPA-GKLYYLTSEADVGT-VMDKLFDELAQK-QNDLTS 323

Query:   278 STIPVMFGRTLEVPQSCNGVARFTFEYLCGRPVGAADYIAVAHNYHTVFITNIPVMSMRI 337
               I  + GR L + ++C  VA  TFE LC RP+GA+DY+ ++ N+ TV I NIP  S+  
Sbjct:   324 PRILKVQGRELRLNKACGTVADCTFEELCERPLGASDYLELSKNFDTVIIRNIPQFSLAK 383

Query:   338 RDKARRFITLIDELYNHHCCLFCSAASSIDDLF 370
             R + RRFITLID  Y+    + CSA+  I  LF
Sbjct:   384 RTQVRRFITLIDNFYDFKVRIICSASVPISSLF 416

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

UNIPROTKB|F1PD84 LACE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 386 (140.9 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
 Identities = 98/275 (35%), Positives = 149/275 (54%)

Query:   158 ASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVA 217
             A +LCFDE Q  D+   + L  +   L   G V+VATSNR P DL ++G+QR  F   +A
Sbjct:   206 ACLLCFDEFQVTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANFVPFIA 265

Query:   218 KLEKHCEIIPIGSEVDYRRLIAQRSIDQVHYFWPLDDNAVRQLEAMWCQVTNHFGGKIIS 277
              L+K+C  + + S +DYR+    R +      + L   A   +EA+  ++ +    K   
Sbjct:   266 VLKKYCNTVQLDSGIDYRK----RDLPAAGKLYYLTSEA--DVEAVMDKLFDELAQKQND 319

Query:   278 STIPVMF---GRTLEVPQSCNGVARFTFEYLCGRPVGAADYIAVAHNYHTVFITNIPVMS 334
              T P +    GR L + ++C  VA  TFE LC RP+GA+DY+ ++ N+ TVF+ NIP  +
Sbjct:   320 LTRPRILKVQGRELRLNKACGTVADCTFEELCERPLGASDYLELSKNFDTVFLRNIPQFT 379

Query:   335 MRIRDKARRFITLIDELYNHHCCLFCSAASSIDDLFQGTEEGTLFDLESFQFETEIEGGK 394
             +  R +ARRFITLID  Y+    + CSA++ I  LF          L     ++E+E  +
Sbjct:   380 LAKRTQARRFITLIDNFYDFKVRVICSASTPIASLF----------LHQHH-DSELEHSR 428

Query:   395 LRRDVLAEGTVSSGGAPAGIVSMLSGQEELFAFRR 429
             +  D L     S+ G     +SM +G+EE+FAF+R
Sbjct:   429 ILMDDLGLSQDSAEG-----LSMFTGEEEIFAFQR 458

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E1BQ18 LACE1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 385 (140.6 bits), Expect = 1.4e-50, Sum P(2) = 1.4e-50
 Identities = 96/275 (34%), Positives = 150/275 (54%)

Query:   158 ASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVA 217
             A +LCFDE Q  D+   + L  +   L   G V+VATSNR P DL ++G+QR  F   +A
Sbjct:   206 ACLLCFDEFQVTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANFVPFIA 265

Query:   218 KLEKHCEIIPIGSEVDYRRLIAQRSIDQVHYFWPLDDNAVRQLEAMWCQVTNHFGGKIIS 277
              L+++C  + + S +DYR+    R +      + L   A   +EA+  ++ +    K   
Sbjct:   266 VLKEYCNTVQLDSGIDYRK----RELPAAGKLYYLTSEA--DVEAVMDKLFDELAQKQND 319

Query:   278 STIPVMF---GRTLEVPQSCNGVARFTFEYLCGRPVGAADYIAVAHNYHTVFITNIPVMS 334
              T P +    GR L + ++C  VA  TFE LC RP+GA+DY+ ++ N+ TVF+ NIP  +
Sbjct:   320 LTRPRILKVQGRELRLNKACGTVADCTFEELCERPLGASDYLELSKNFDTVFLRNIPQFT 379

Query:   335 MRIRDKARRFITLIDELYNHHCCLFCSAASSIDDLFQGTEEGTLFDLESFQFETEIEGGK 394
             +  R +ARRFITLID  Y+    + CSA++ +  LF       L D      ++E+E  +
Sbjct:   380 LAKRTQARRFITLIDNFYDFKVRIICSASAPVSSLF-------LCD----HHDSELEQSR 428

Query:   395 LRRDVLAEGTVSSGGAPAGIVSMLSGQEELFAFRR 429
             +  D L     S+ G     ++M +G+EE+FAF+R
Sbjct:   429 ILMDDLGLSQDSAEG-----LAMFTGEEEIFAFQR 458

GO:0005739 "mitochondrion" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q8WV93 LACE1 "Lactation elevated protein 1" [Homo sapiens (taxid:9606)]

 Score = 378 (138.1 bits), Expect = 9.8e-50, Sum P(2) = 9.8e-50
 Identities = 95/275 (34%), Positives = 148/275 (53%)

Query:   158 ASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVA 217
             A +LCFDE Q  D+   + L  +   L   G V+VATSNR P DL ++G+QR  F   +A
Sbjct:   207 ACLLCFDEFQVTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANFVPFIA 266

Query:   218 KLEKHCEIIPIGSEVDYRRLIAQRSIDQVHYFWPLDDNAVRQLEAMWCQVTNHFGGKIIS 277
              L+++C  + + S +DYR+    R +      + L   A   +EA+  ++ +    K   
Sbjct:   267 VLKEYCNTVQLDSGIDYRK----RELPAAGKLYYLTSEA--DVEAVMDKLFDELAQKQND 320

Query:   278 STIPVMF---GRTLEVPQSCNGVARFTFEYLCGRPVGAADYIAVAHNYHTVFITNIPVMS 334
              T P +    GR L + ++C  VA  TFE LC RP+GA+DY+ ++ N+ T+F+ NIP  +
Sbjct:   321 LTRPRILKVQGRELRLNKACGTVADCTFEELCERPLGASDYLELSKNFDTIFLRNIPQFT 380

Query:   335 MRIRDKARRFITLIDELYNHHCCLFCSAASSIDDLFQGTEEGTLFDLESFQFETEIEGGK 394
             +  R + RRFITLID  Y+    + CSA++ I  LF          L     ++E+E  +
Sbjct:   381 LANRTQGRRFITLIDNFYDLKVRIICSASTPISSLF----------LHQHH-DSELEQSR 429

Query:   395 LRRDVLAEGTVSSGGAPAGIVSMLSGQEELFAFRR 429
             +  D L     S+ G     +SM +G+EE+FAF+R
Sbjct:   430 ILMDDLGLSQDSAEG-----LSMFTGEEEIFAFQR 459

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

DICTYBASE|DDB_G0292852 DDB_G0292852 "putative ATPase" [Dictyostelium discoideum (taxid:44689)]

 Score = 350 (128.3 bits), Expect = 5.4e-48, Sum P(3) = 5.4e-48
 Identities = 79/219 (36%), Positives = 120/219 (54%)

Query:   160 ILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKL 219
             +LCFDE Q  DV   + L  + S +   G +LV TSNRAP DL ++G+ R++F   +  L
Sbjct:   262 LLCFDEFQVTDVSDAMILKRLFSHMFDLGAILVTTSNRAPIDLYKNGLNRQLFIPFIHFL 321

Query:   220 EKHCEIIPIGSEVDYRRLIAQRSIDQVHYFWPLDDNAVRQLEAMWCQVTNHFGGKIISST 279
             E  C +  + S VDYR L   R+  +V Y+       V     ++ Q++   G  + S  
Sbjct:   322 ESKCLVHNLNSGVDYR-LTGTRT-KKVFYYPSSSSKEVADFNQLFIQLSK--GEPMESKQ 377

Query:   280 IPVMFGRTLEVPQSC-NGVARFTFEYLCGRPVGAADYIAVAHNYHTVFITNIPVMSMRIR 338
             + +  GR +  P++  + +A F F  LC   +GA DYI ++  +HT+F+ NIP+M+   +
Sbjct:   378 LVLSTGRKVNCPRTVLDSIALFDFYELCDNALGADDYIELSKQFHTIFLENIPLMNESSK 437

Query:   339 DKARRFITLIDELYNHHCCLFCSAASSIDDLFQGTEEGT 377
             ++ARRFI L+D LY H   L C+AASS   LF      T
Sbjct:   438 NQARRFIILVDVLYEHKVKLICTAASSPAQLFMSEGSNT 476

GO:0005524 "ATP binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=ISS

POMBASE|SPBC115.02c SPBC115.02c "AFG1 family mitochondrial ATPase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 344 (126.2 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
 Identities = 77/212 (36%), Positives = 116/212 (54%)

Query:   159 SILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAK 218
             ++LCFDE+Q  DV   + L  +   L+  G V+  TSNRAP DL ++G+QRE F   +  
Sbjct:   191 TVLCFDELQVTDVADALLLRRLFEALMKYGVVIFITSNRAPSDLYKNGIQRESFIPCIKL 250

Query:   219 LEKHCEIIPIGSEVDYRRLIAQRSIDQVHYFWPLDDNAVRQLEAMWCQVTNHFGGKIISS 278
             LE   ++I + S  DYRRL   +S  +  Y +P +   V++    W              
Sbjct:   251 LEHRLQVICLDSPNDYRRL---KSKTEDTYLYPANSPEVKKALENWFLCYADEKDPAHQD 307

Query:   279 TIPVMFGRTLEVPQSCNGVARFTFEYLCGRPVGAADYIAVAHNYHTVFITNIPVMSMRIR 338
              + V FGR + VP++   VA FTFE LCG P  AADY+++A  YH   +++IP +S+  +
Sbjct:   308 EVEV-FGRKIIVPKASGNVAWFTFEQLCGEPKSAADYLSLASRYHVFIVSDIPKLSIESK 366

Query:   339 DKARRFITLIDELYNHHCCLFCSAASSIDDLF 370
             D   RFIT ID LY+ H  L  S+   + +++
Sbjct:   367 DLIHRFITFIDALYDTHGKLILSSEVPVQEIY 398

GO:0005524 "ATP binding" evidence=IC

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0008150 "biological_process" evidence=ND

GO:0016887 "ATPase activity" evidence=ISM

ZFIN|ZDB-GENE-091006-2 lace1a "lactation elevated 1a" [Danio rerio (taxid:7955)]

 Score = 354 (129.7 bits), Expect = 9.7e-46, Sum P(2) = 9.7e-46
 Identities = 90/272 (33%), Positives = 144/272 (52%)

Query:   158 ASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVA 217
             A +LCFDE Q  D+   + L  +   L   G V+VATSNR P DL ++G+QR  F   +A
Sbjct:   196 ACLLCFDEFQVTDIADAMILKQLFENLFLNGVVVVATSNRPPDDLYKNGLQRVNFVPFIA 255

Query:   218 KLEKHCEIIPIGSEVDYRRLIAQRSIDQVHYFWPLDDNAVRQLEAMWCQVTNHFGGKIIS 277
              L+++C+ + + S +DYRR    R      ++   + +    L+ ++ ++          
Sbjct:   256 VLKEYCQTLRLDSGIDYRR--RNRPAAGKLFYLSSEPDVDATLDKLFDEMAFKQNDITRP 313

Query:   278 STIPVMFGRTLEVPQSCNGVARFTFEYLCGRPVGAADYIAVAHNYHTVFITNIPVMSMRI 337
              ++ V  GR L + ++C  +A  TFE LC RP+GA+DY+ ++  + TVFI NIP++++  
Sbjct:   314 RSLKV-HGRILTLDKACGTIADCTFEELCDRPIGASDYLEISAVFDTVFIRNIPLLTLNK 372

Query:   338 RDKARRFITLIDELYNHHCCLFCSAASSIDDLFQGTEEGTLFDLESFQFETEIEGGKLRR 397
             + +ARRFITLID LY H   +   A + +DDLF           +    ET +    L  
Sbjct:   373 KTQARRFITLIDTLYEHKVRVVLKAETPLDDLFVHEHHD-----DHDPHETHV----LLD 423

Query:   398 DVLAEGTVSSGGAPAGIVSMLSGQEELFAFRR 429
             D+   G     G+   I    +G+EE+FAF+R
Sbjct:   424 DL---GISRDAGSSLAI---FTGEEEVFAFQR 449

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_VI001793 hypothetical protein (602 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	454
COG1485	367	COG1485, COG1485, Predicted ATPase [General functi	4e-79
pfam03969	361	pfam03969, AFG1_ATPase, AFG1-like ATPase	2e-62
pfam13191	154	pfam13191, AAA_16, AAA ATPase domain	4e-04

>gnl|CDD|224402 COG1485, COG1485, Predicted ATPase [General function prediction only]

 Score =  249 bits (638), Expect = 4e-79
 Identities = 111/334 (33%), Positives = 166/334 (49%), Gaps = 57/334 (17%)

Query: 40  PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVA 99
               +GLYL+G VG GKTMLMD+FY +  G  K  +R HFH  M ++++ +H L + Q  
Sbjct: 62  HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERK--RRLHFHRFMARVHQRLHTL-QGQ-- 116

Query: 100 EKSLRSSISGWITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGAS 159
                                                 + LP +AD+             
Sbjct: 117 -------------------------------------TDPLPPIADELA-------AETR 132

Query: 160 ILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKL 219
           +LCFDE +  D+   + L  ++  L + G VLVATSN AP +L +DG+QRE F   +  +
Sbjct: 133 VLCFDEFEVTDIADAMILGRLLEALFARGVVLVATSNTAPDNLYKDGLQRERFLPAIDLI 192

Query: 220 EKHCEIIPIGSEVDYRRLIAQRSIDQVH-YFWPLDDNAVRQLEAMWCQVTNHFGGKIISS 278
           + H E++ +   VDYR     R ++Q   Y  PLD  A   L+ +W  ++    G   ++
Sbjct: 193 KSHFEVVNVDGPVDYR----LRKLEQAPVYLTPLDAEAEAALDKLWAALS---DGAPEAA 245

Query: 279 TIPVMFGRTLEVPQSCNGVARFTFEYLCGRPVGAADYIAVAHNYHTVFITNIPVMSMRIR 338
               + GR + VP    G+  F F  LC  P  A+DY+A+A  +HTVF+T++P M    R
Sbjct: 246 ANLEIKGREIRVPAVAGGLLWFDFAQLCEAPRSASDYLALAERFHTVFLTDVPQMDPLDR 305

Query: 339 DKARRFITLIDELYNHHCCLFCSAASSIDDLFQG 372
           D+ARRFI L+DELY+    L  SA   +++L+QG
Sbjct: 306 DEARRFIALVDELYDRGVKLVASAEVPLNELYQG 339

Length = 367

>gnl|CDD|217821 pfam03969, AFG1_ATPase, AFG1-like ATPase

 Score =  206 bits (525), Expect = 2e-62
 Identities = 109/342 (31%), Positives = 166/342 (48%), Gaps = 58/342 (16%)

Query: 32  LVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMH 91
           L GR  +  P  +GLYL+G VG GKT LMD F+ +  G  K  +R HFH  M ++++ + 
Sbjct: 51  LWGRKRSHQP-VRGLYLWGGVGRGKTHLMDSFFESLPGERK--RRTHFHRFMFRVHDELT 107

Query: 92  RLWKNQVAEKSLRSSISGWITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ 151
            L                                            + LP  AD+F  + 
Sbjct: 108 TLQGG----------------------------------------DDPLPIAADRFANE- 126

Query: 152 HADQRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREI 211
                 A +LCFDE +  D+   + L  +   L + G  LVATSN AP  L ++G+ R+ 
Sbjct: 127 ------ARLLCFDEFEVDDIGDAMILGRLFEALFARGVSLVATSNTAPEQLYRNGLNRQR 180

Query: 212 FQKLVAKLEKHCEIIPIGSEVDYRRLIAQRSIDQVH-YFWPLDDNAVRQLEAMWCQVTNH 270
           F   +  LE H E++ +   VDYR     R+++Q   + +PLD  A   L+ +W  +T  
Sbjct: 181 FLPAIDLLESHFEVVRVDGPVDYR----LRTLEQAPLWLYPLDGAAWAALDRLWDALTL- 235

Query: 271 FGGKIISSTIPVMFGRTLEVPQSCNGVARFTFEYLCGRPVGAADYIAVAHNYHTVFITNI 330
            G     ST+ V   R      +   +  F+F  LC  P   +DY+A+A  + TVF+T++
Sbjct: 236 -GEPQPLSTLEVA-ARLARARAAGGDLVWFSFADLCLAPRHPSDYLALAERFSTVFLTDV 293

Query: 331 PVMSMRIRDKARRFITLIDELYNHHCCLFCSAASSIDDLFQG 372
           P M+   +D+ARRFI L+DELY+ H  L  SA +++DDL++G
Sbjct: 294 PPMTRCSQDEARRFIALVDELYDRHVKLVASAEAALDDLYRG 335

This family of proteins contains a P-loop motif and are predicted to be ATPases. Length = 361

>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 27/169 (15%), Positives = 58/169 (34%), Gaps = 20/169 (11%)

Query: 25  RERKLDSLVGR-CPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM 83
           RE +L+ L+          P  + L G  G+GKT L+              +        
Sbjct: 5   REEELERLLDALRRARSGGPPSVLLTGPSGTGKTSLLREL----------LEGLLVAAGK 54

Query: 84  LKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAV 143
               E       +Q   + LR  +          ++++    A         ++ +   V
Sbjct: 55  CDQAERNPPYAFSQALRELLRQLLR------ELAAELLLLREALLAALGAELIEGLQDLV 108

Query: 144 ADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLV 192
               L+++   +    +L  D++Q  D  ++  L+ ++ RL     ++V
Sbjct: 109 E---LLERLLARARPLVLVLDDLQWADEESLDLLAALLRRLERLPLLVV 154

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Length = 154

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	454
KOG2383	467	consensus Predicted ATPase [General function predi	100.0
PF03969	362	AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654	100.0
COG1485	367	Predicted ATPase [General function prediction only	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.82
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.82
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.8
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.79
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.78
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.77
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.77
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.76
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.76
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.76
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.75
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.75
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.74
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.73
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.73
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.73
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.72
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.71
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.71
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.71
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.71
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.71
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.7
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.7
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.7
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.7
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.7
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.7
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.7
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.7
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.69
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.69
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.69
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.69
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.69
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.69
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.68
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.68
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.68
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.68
PRK10908	222	cell division protein FtsE; Provisional	99.68
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.68
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.68
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.68
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.67
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.67
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.67
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.67
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.67
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.67
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.67
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.67
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.67
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.67
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.67
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.67
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.67
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.66
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.66
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.66
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.66
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.66
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.66
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.66
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.66
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.66
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.66
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.66
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.66
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.66
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.66
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.66
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.66
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.66
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.66
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.65
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.65
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.65
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.65
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.65
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.65
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.65
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.65
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.65
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.65
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.65
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.65
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.65
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.65
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.65
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.65
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.65
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.65
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.65
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.65
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.65
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.64
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.64
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.64
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.64
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.64
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.64
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.64
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.64
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.64
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.64
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.64
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.64
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.64
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.64
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.64
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.64
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.63
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.63
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.63
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.63
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.63
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.63
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.63
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.63
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.63
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.63
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.63
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.62
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.62
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.62
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.62
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.62
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.62
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.62
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.62
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.62
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.62
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.62
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.62
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.62
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.62
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.62
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.62
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.62
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.61
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.61
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.61
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.61
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.61
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.61
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.61
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.61
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.61
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.61
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.61
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.61
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.61
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.61
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.61
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.61
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.6
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.6
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.6
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.6
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.6
cd03246	173	ABCC_Protease_Secretion This family represents the	99.6
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.6
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.6
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.6
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.6
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.6
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.6
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.6
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.6
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.6
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.59
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.59
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.59
COG4559	259	ABC-type hemin transport system, ATPase component	99.59
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.59
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.59
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.58
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.58
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.58
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.58
PRK10938	490	putative molybdenum transport ATP-binding protein	99.58
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.58
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.58
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.58
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.58
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.58
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.58
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.57
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.57
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.57
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.57
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.57
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.57
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.57
COG4988	559	CydD ABC-type transport system involved in cytochr	99.57
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.57
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.57
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.57
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.57
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.57
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.57
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.57
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.57
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.57
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.57
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.56
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.56
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.56
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.56
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.56
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.56
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.56
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.56
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.56
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.56
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.56
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.56
PLN03211	659	ABC transporter G-25; Provisional	99.56
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.56
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.56
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.55
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.55
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.55
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.55
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.55
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.55
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.55
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.55
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.55
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.55
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.55
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.55
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.55
PRK13409	590	putative ATPase RIL; Provisional	99.55
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.54
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.54
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.54
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.54
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.54
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.54
COG1123	539	ATPase components of various ABC-type transport sy	99.54
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.54
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.54
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.54
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.54
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.54
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.54
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.54
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.54
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.53
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.53
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.53
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.53
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.53
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.53
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.53
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	99.53
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.53
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.53
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.53
PRK11147	635	ABC transporter ATPase component; Reviewed	99.53
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.52
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.52
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.52
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.52
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.52
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.52
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.52
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.52
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.52
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.52
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	99.52
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.52
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.51
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.51
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.51
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.51
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.51
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.51
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.51
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.5
COG4181	228	Predicted ABC-type transport system involved in ly	99.5
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.5
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.5
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.5
COG0488	530	Uup ATPase components of ABC transporters with dup	99.5
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.5
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.5
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.5
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.5
PRK10938	490	putative molybdenum transport ATP-binding protein	99.5
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.49
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.49
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.49
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.49
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.49
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.49
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.48
COG0488	530	Uup ATPase components of ABC transporters with dup	99.48
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.48
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.48
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.48
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.47
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.47
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.47
PRK13409	590	putative ATPase RIL; Provisional	99.47
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.47
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.47
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.47
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.47
PLN03073	718	ABC transporter F family; Provisional	99.47
PLN03140	1470	ABC transporter G family member; Provisional	99.46
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.46
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.46
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.46
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.46
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.45
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.44
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.44
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.44
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.44
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.43
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.43
COG1123	539	ATPase components of various ABC-type transport sy	99.42
COG4987	573	CydC ABC-type transport system involved in cytochr	99.42
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.41
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.41
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.41
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.4
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.4
PRK08181	269	transposase; Validated	99.39
PRK08939	306	primosomal protein DnaI; Reviewed	99.39
PRK06526	254	transposase; Provisional	99.39
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.39
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.39
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.38
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.38
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.38
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.36
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.36
PRK09183	259	transposase/IS protein; Provisional	99.35
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.35
PRK11147	635	ABC transporter ATPase component; Reviewed	99.35
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.35
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.35
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.34
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.34
PLN03232	1495	ABC transporter C family member; Provisional	99.34
PLN03140	1470	ABC transporter G family member; Provisional	99.33
COG4172	534	ABC-type uncharacterized transport system, duplica	99.32
PLN03130	1622	ABC transporter C family member; Provisional	99.31
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.31
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.31
PRK08116	268	hypothetical protein; Validated	99.31
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.3
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.3
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.28
PLN03073	718	ABC transporter F family; Provisional	99.28
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.28
PTZ00243	1560	ABC transporter; Provisional	99.28
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.27
KOG0062	582	consensus ATPase component of ABC transporters wit	99.26
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	99.25
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.24
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.24
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	99.24
PLN03232	1495	ABC transporter C family member; Provisional	99.23
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.22
PRK12377	248	putative replication protein; Provisional	99.22
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.22
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.21
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.2
PLN03130	1622	ABC transporter C family member; Provisional	99.2
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.19
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.19
COG4172	534	ABC-type uncharacterized transport system, duplica	99.19
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.18
PTZ00243	1560	ABC transporter; Provisional	99.18
PRK06835	329	DNA replication protein DnaC; Validated	99.18
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.17
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.14
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.14
COG1484	254	DnaC DNA replication protein [DNA replication, rec	99.11
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.11
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.09
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.09
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.09
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	99.09
PRK07952	244	DNA replication protein DnaC; Validated	99.07
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.07
PRK06921	266	hypothetical protein; Provisional	99.05
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.04
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.03
COG4178	604	ABC-type uncharacterized transport system, permeas	99.02
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	98.99
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	98.98
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	98.97
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	98.95
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	98.94
PRK06893	229	DNA replication initiation factor; Validated	98.94
cd03239	178	ABC_SMC_head The structural maintenance of chromos	98.92
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	98.92
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	98.91
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	98.91
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	98.91
KOG0054	1381	consensus Multidrug resistance-associated protein/	98.9
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	98.9
PRK08727	233	hypothetical protein; Validated	98.9
PRK08084	235	DNA replication initiation factor; Provisional	98.85
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	98.85
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	98.85
PRK05642	234	DNA replication initiation factor; Validated	98.84
PRK14088	440	dnaA chromosomal replication initiation protein; P	98.83
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	98.83
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	98.82
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	98.82
KOG0062	582	consensus ATPase component of ABC transporters wit	98.81
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.8
COG3910	233	Predicted ATPase [General function prediction only	98.8
KOG0054	1381	consensus Multidrug resistance-associated protein/	98.79
PRK14086	617	dnaA chromosomal replication initiation protein; P	98.78
PRK14087	450	dnaA chromosomal replication initiation protein; P	98.78
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	98.75
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	98.74
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	98.73
PRK00149	450	dnaA chromosomal replication initiation protein; R	98.71
PRK12422	445	chromosomal replication initiation protein; Provis	98.7
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	98.7
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	98.69
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	98.68
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	98.67
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	98.64
PRK08533	230	flagellar accessory protein FlaH; Reviewed	98.63
PRK00635	1809	excinuclease ABC subunit A; Provisional	98.63
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	98.61
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	98.61
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	98.6
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	98.6
PRK06620	214	hypothetical protein; Validated	98.6
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	98.59
KOG0728	404	consensus 26S proteasome regulatory complex, ATPas	98.56
PLN03025	319	replication factor C subunit; Provisional	98.55
COG0593	408	DnaA ATPase involved in DNA replication initiation	98.55
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	98.53
PRK09087	226	hypothetical protein; Validated	98.52
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	98.51
PRK03992	389	proteasome-activating nucleotidase; Provisional	98.5
CHL00206	2281	ycf2 Ycf2; Provisional	98.5
PRK12402	337	replication factor C small subunit 2; Reviewed	98.49
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.49
PF00004	132	AAA: ATPase family associated with various cellula	98.49
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	98.49
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	98.48
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	98.48
PHA02544	316	44 clamp loader, small subunit; Provisional	98.47
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	98.47
CHL00176	638	ftsH cell division protein; Validated	98.46
PRK00409	782	recombination and DNA strand exchange inhibitor pr	98.45
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	98.45
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.43
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	98.43
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	98.42
KOG0729	435	consensus 26S proteasome regulatory complex, ATPas	98.42
KOG0652	424	consensus 26S proteasome regulatory complex, ATPas	98.41
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	98.41
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.41
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	98.4
PRK04195	482	replication factor C large subunit; Provisional	98.4
CHL00195	489	ycf46 Ycf46; Provisional	98.39
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	98.35
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	98.34
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	98.34
PRK00440	319	rfc replication factor C small subunit; Reviewed	98.3
PRK08903	227	DnaA regulatory inactivator Hda; Validated	98.3
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	98.3
KOG0651	388	consensus 26S proteasome regulatory complex, ATPas	98.29
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	98.28
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	98.28
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	98.22
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	98.22
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.21
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	98.19
smart00382	148	AAA ATPases associated with a variety of cellular	98.19
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	98.18
KOG0736	953	consensus Peroxisome assembly factor 2 containing	98.16
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	98.16
PRK13342	413	recombination factor protein RarA; Reviewed	98.16
KOG0726	440	consensus 26S proteasome regulatory complex, ATPas	98.16
COG2256	436	MGS1 ATPase related to the helicase subunit of the	98.15
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	98.13
PRK13695	174	putative NTPase; Provisional	98.12
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	98.12
PRK06067	234	flagellar accessory protein FlaH; Validated	98.12
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	98.11
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	98.11
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	98.1

>KOG2383 consensus Predicted ATPase [General function prediction only]

Probab=100.00  E-value=6.1e-96  Score=722.82  Aligned_cols=350  Identities=43%  Similarity=0.701  Sum_probs=293.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChH
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK  119 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~  119 (454)
                      +.+|||+||||.+|||||||||+|++.+++ +..+.|||||+||..+|+++|..+++.......  +--+|         
T Consensus       111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~-i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~--~a~~~---------  178 (467)
T KOG2383|consen  111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPP-IWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPG--YAKSW---------  178 (467)
T ss_pred             CCCCceEEEecccCcchhHHHHHHhhcCCc-hhhhhhhhHHHHHHHHHHHHHHHHHhccccCcc--ccccc---------
Confidence            456999999999999999999999999986 678999999999999999999998864321111  00000         


Q ss_pred             HHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCc
Q 012882          120 VMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAP  199 (454)
Q Consensus       120 ~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P  199 (454)
                                      .-+++..+|.+++       .++.||||||+|++|+++|++|.+||..|++.|+|||+||||+|
T Consensus       179 ----------------~~Dpl~~vA~eIa-------~ea~lLCFDEfQVTDVADAmiL~rLf~~Lf~~GvVlvATSNR~P  235 (467)
T KOG2383|consen  179 ----------------EIDPLPVVADEIA-------EEAILLCFDEFQVTDVADAMILKRLFEHLFKNGVVLVATSNRAP  235 (467)
T ss_pred             ----------------cCCccHHHHHHHh-------hhceeeeechhhhhhHHHHHHHHHHHHHHHhCCeEEEEeCCCCh
Confidence                            1256788898886       78999999999999999999999999999999999999999999


Q ss_pred             cchhcCCchhhhhHHHHHHHHhhccccccCCchhhhhhccccCCCceeEEecCChHHHHHHHHHHHHHhcccCCCccccc
Q 012882          200 WDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLIAQRSIDQVHYFWPLDDNAVRQLEAMWCQVTNHFGGKIISST  279 (454)
Q Consensus       200 ~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~DyR~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (454)
                      +|||+||+||+.|+|||.+|+++|.|+.++|++|||+...  +.+ ..||.+...+.+..+++.|+.+++++.+.. +..
T Consensus       236 ~dLYknGlQR~~F~PfI~~L~~rc~vi~ldS~vDYR~~~~--~~~-~~~yf~~~~d~~~~l~~~fk~~~~dq~d~~-~~~  311 (467)
T KOG2383|consen  236 EDLYKNGLQRENFIPFIALLEERCKVIQLDSGVDYRRKAK--SAG-ENYYFISETDVETVLKEWFKLLAADQNDGT-RQR  311 (467)
T ss_pred             HHHhhcchhhhhhhhHHHHHHHhheEEecCCccchhhccC--CCC-ceeEecChhhHHHHHHHHHHHHhccCCCCC-CCc
Confidence            9999999999999999999999999999999999995432  222 245555555788899999988887655443 445


Q ss_pred             eeeecCceeecccccCCEEEEechhhhCCCCChhHHHHHHhcCCEEEEcCCCCCCcCCchhhhhhhhhHhhhhhcCceEE
Q 012882          280 IPVMFGRTLEVPQSCNGVARFTFEYLCGRPVGAADYIAVAHNYHTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLF  359 (454)
Q Consensus       280 ~~~~~gR~~~v~~~~~~va~f~F~eLC~~~lg~aDYl~la~~f~ti~i~~VP~l~~~~~~~arRFi~lID~lYe~~~kl~  359 (454)
                      +++++||++.||++|||||+|||+|||++|+||+|||.||++||||||+|||+|++..||+|||||||||++||++|||+
T Consensus       312 ~l~v~GR~l~vpk~cg~VA~ftFeeLC~rPlgAaDYL~lak~fhti~v~dIP~lsl~~r~~~rRFITliD~lYd~~~rlv  391 (467)
T KOG2383|consen  312 TLVVFGRKLIVPKACGGVADFTFEELCGRPLGAADYLGLAKNFHTIIVRDIPQLSLENRDQARRFITLIDALYDNHVRLV  391 (467)
T ss_pred             ceeeecceEEecccCCCcccccHHHHhCCccchHHHHHHHhhcceeEeeccchhhhHHHHHHhhHhHHHHHHhhccceEE
Confidence            55789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCChhhhccCCCCCccccccccchhhhhhc-ccccchhhccCCCCCCCCCCCcccCCcchhHHHhHhhhHhhhhccc
Q 012882          360 CSAASSIDDLFQGTEEGTLFDLESFQFETEIEG-GKLRRDVLAEGTVSSGGAPAGIVSMLSGQEELFAFRRAWFVTVSTL  438 (454)
Q Consensus       360 ~~a~~~~~~lf~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~g~ee~fAf~R~~SRl~eM~  438 (454)
                      |+|++|+++||......   +       ++... +.+|+|+..      ..+..+.+.+|+|+||.|||+||+|||+|||
T Consensus       392 ~sa~~p~~~Lf~~~~~~---e-------~ls~s~r~~mddl~i------ks~~~~~~~mf~g~EE~FAf~RtlSRL~eMq  455 (467)
T KOG2383|consen  392 CSAATPLEELFQFTGHS---E-------ALSDSPRTLMDDLGI------KSDSAGGSPMFSGEEEGFAFDRTLSRLYEMQ  455 (467)
T ss_pred             ecCCCCHHHHhcccCcc---c-------ccccCcccchhhhcc------cccCccccccccchHHHHHHHHHHHHHHHhh
Confidence            99999999999865431   1       11111 334555422      2222333459999999999999999999999


Q ss_pred             cccccc
Q 012882          439 VVDIND  444 (454)
Q Consensus       439 ~~~~~~  444 (454)
                      |.+|-.
T Consensus       456 t~~y~~  461 (467)
T KOG2383|consen  456 TELYWE  461 (467)
T ss_pred             cchhcc
Confidence            988543

>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP

Probab=100.00  E-value=5.8e-83  Score=647.94  Aligned_cols=312  Identities=44%  Similarity=0.762  Sum_probs=279.5

Q ss_pred             hhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhh
Q 012882           29 LDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSIS  108 (454)
Q Consensus        29 ~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~  108 (454)
                      +..++++++ ...+|+|+||||++|+|||+||++|+..+|  +..|.|+|||+||.++|+.++...+             
T Consensus        49 ~~~~~~~~~-~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp--~~~k~R~HFh~Fm~~vh~~l~~~~~-------------  112 (362)
T PF03969_consen   49 LRKLFGRKP-PPPPPKGLYLWGPVGRGKTMLMDLFYDSLP--IKRKRRVHFHEFMLDVHSRLHQLRG-------------  112 (362)
T ss_pred             HHHHhcCCc-cCCCCceEEEECCCCCchhHHHHHHHHhCC--ccccccccccHHHHHHHHHHHHHhC-------------
Confidence            344555444 456899999999999999999999999998  4689999999999999999998752             


Q ss_pred             ccccCCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCC
Q 012882          109 GWITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLLSTG  188 (454)
Q Consensus       109 ~~~~~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G  188 (454)
                                                 ..+++..+|+.+.       .+.+|||||||++.|+++||+|.++|..|+++|
T Consensus       113 ---------------------------~~~~l~~va~~l~-------~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~g  158 (362)
T PF03969_consen  113 ---------------------------QDDPLPQVADELA-------KESRLLCFDEFQVTDIADAMILKRLFEALFKRG  158 (362)
T ss_pred             ---------------------------CCccHHHHHHHHH-------hcCCEEEEeeeeccchhHHHHHHHHHHHHHHCC
Confidence                                       2355678888886       679999999999999999999999999999999


Q ss_pred             cEEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCchhhhhhccccCCCceeEEecCChHHHHHHHHHHHHHh
Q 012882          189 TVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLIAQRSIDQVHYFWPLDDNAVRQLEAMWCQVT  268 (454)
Q Consensus       189 ~vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~DyR~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~  268 (454)
                      +|||+|||++|++||+||+||++|+|||++|+++|+|+++++++|||+....   ....|++|.+..+.+.++++|..++
T Consensus       159 vvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~ld~~~DyR~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~  235 (362)
T PF03969_consen  159 VVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVELDGGVDYRRRGAP---PAPVYFYPLDEEADAALERLFQRLT  235 (362)
T ss_pred             CEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEecCCCchhhhccc---ccccccCcchHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999996432   3458999999999999999999998


Q ss_pred             cccCCCccccceeeecCceeecccccCCEEEEechhhhCCCCChhHHHHHHhcCCEEEEcCCCCCCcCCchhhhhhhhhH
Q 012882          269 NHFGGKIISSTIPVMFGRTLEVPQSCNGVARFTFEYLCGRPVGAADYIAVAHNYHTVFITNIPVMSMRIRDKARRFITLI  348 (454)
Q Consensus       269 ~~~~~~~~~~~~~~~~gR~~~v~~~~~~va~f~F~eLC~~~lg~aDYl~la~~f~ti~i~~VP~l~~~~~~~arRFi~lI  348 (454)
                      +.  .+..+.++. +.||+|.||++++++|||||+|||++|+||+||++||++||||||+|||+|+..++|+|||||+||
T Consensus       236 ~~--~~~~~~~l~-v~gR~i~v~~~~~~va~F~F~eLC~~plg~aDYlaLA~~F~ti~I~~VP~l~~~~~n~arRFI~LI  312 (362)
T PF03969_consen  236 GG--EPEEPRTLE-VGGREIPVPRACGGVAWFDFDELCERPLGAADYLALAERFHTIFISDVPVLSESDRNEARRFITLI  312 (362)
T ss_pred             cc--cCCCCceeE-EeeeEEeeecccCCEEEecHHHhhccCCCHHHHHHHHHhCCEEEEcCCCCcccCChhHHHHHHHHH
Confidence            73  233445554 689999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcCceEEEEecCChhhhccCCCCCccccccccchhhhhhcccccchhhccCCCCCCCCCCCcccCCcchhHHHhHh
Q 012882          349 DELYNHHCCLFCSAASSIDDLFQGTEEGTLFDLESFQFETEIEGGKLRRDVLAEGTVSSGGAPAGIVSMLSGQEELFAFR  428 (454)
Q Consensus       349 D~lYe~~~kl~~~a~~~~~~lf~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~ee~fAf~  428 (454)
                      |+|||++|+|+|+|++||++||.+..                                                ..|.|+
T Consensus       313 D~LYd~~v~L~~sa~~~~~~L~~~~~------------------------------------------------~~~~f~  344 (362)
T PF03969_consen  313 DVLYDRKVKLIISAAAPPDELFQGGR------------------------------------------------LAFEFQ  344 (362)
T ss_pred             HHHhhCCCcEEEEcCCCHHHHHhCCC------------------------------------------------chhhhh
Confidence            99999999999999999999996421                                                168899


Q ss_pred             hhHhhhhccccccccc
Q 012882          429 RAWFVTVSTLVVDIND  444 (454)
Q Consensus       429 R~~SRl~eM~~~~~~~  444 (454)
                      ||+|||.|||+.+|..
T Consensus       345 RT~SRL~Em~~~~y~~  360 (362)
T PF03969_consen  345 RTASRLSEMQSEEYLA  360 (362)
T ss_pred             HHHHHHHHHhhHHHHh
Confidence            9999999999888654

AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding

>COG1485 Predicted ATPase [General function prediction only]

Probab=100.00  E-value=6.7e-82  Score=619.05  Aligned_cols=301  Identities=36%  Similarity=0.660  Sum_probs=274.7

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChH
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK  119 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~  119 (454)
                      ..+|+|+||||++|+|||+||++||..+|+  ..|.|+|||.||.++|++++.+..                        
T Consensus        62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~--~~k~R~HFh~FM~~vH~~l~~l~g------------------------  115 (367)
T COG1485          62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPG--ERKRRLHFHRFMARVHQRLHTLQG------------------------  115 (367)
T ss_pred             CCCCceEEEECCCCccHHHHHHHHHhhCCc--cccccccHHHHHHHHHHHHHHHcC------------------------
Confidence            468899999999999999999999999984  468999999999999999998752                        


Q ss_pred             HHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCc
Q 012882          120 VMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAP  199 (454)
Q Consensus       120 ~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P  199 (454)
                                      ..+++..+|+++.       .+.+|||||||++.||+++|+|.+||..|+++|++||+|||.+|
T Consensus       116 ----------------~~dpl~~iA~~~~-------~~~~vLCfDEF~VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P  172 (367)
T COG1485         116 ----------------QTDPLPPIADELA-------AETRVLCFDEFEVTDIADAMILGRLLEALFARGVVLVATSNTAP  172 (367)
T ss_pred             ----------------CCCccHHHHHHHH-------hcCCEEEeeeeeecChHHHHHHHHHHHHHHHCCcEEEEeCCCCh
Confidence                            2356788898886       78999999999999999999999999999999999999999999


Q ss_pred             cchhcCCchhhhhHHHHHHHHhhccccccCCchhhhhhccccCCCceeEEecCChHHHHHHHHHHHHHhcccCCCccccc
Q 012882          200 WDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLIAQRSIDQVHYFWPLDDNAVRQLEAMWCQVTNHFGGKIISST  279 (454)
Q Consensus       200 ~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~DyR~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (454)
                      ++||+||+||++|+|+|++|+++|.|+.+|+++|||.....   ....|++|++.++++.|+++|..++..  ....+..
T Consensus       173 ~~LY~dGlqR~~FLP~I~li~~~~~v~~vD~~~DYR~r~l~---~a~~y~~Pl~~~~~~~l~~~~~~ls~~--~~~~~~~  247 (367)
T COG1485         173 DNLYKDGLQRERFLPAIDLIKSHFEVVNVDGPVDYRLRKLE---QAPVYLTPLDAEAEAALDKLWAALSDG--APEAAAN  247 (367)
T ss_pred             HHhcccchhHHhhHHHHHHHHHheEEEEecCCccccccccc---cCceeecCCcHHHHHHHHHHHHHhccC--CccCCch
Confidence            99999999999999999999999999999999999986533   234899999999999999999999873  2223444


Q ss_pred             eeeecCceeecccccCCEEEEechhhhCCCCChhHHHHHHhcCCEEEEcCCCCCCcCCchhhhhhhhhHhhhhhcCceEE
Q 012882          280 IPVMFGRTLEVPQSCNGVARFTFEYLCGRPVGAADYIAVAHNYHTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLF  359 (454)
Q Consensus       280 ~~~~~gR~~~v~~~~~~va~f~F~eLC~~~lg~aDYl~la~~f~ti~i~~VP~l~~~~~~~arRFi~lID~lYe~~~kl~  359 (454)
                      +. +.||+|.+|.++++++||+|.+||.+|+|+.|||+||++||||||+|||+|+...+|+|||||+|||++||+++||+
T Consensus       248 l~-i~gR~i~~~~~~~~~~~f~f~~Lc~~p~s~~DYl~l~~~f~tv~l~~vp~m~~~~~~~arRFI~lVD~lYD~~vkL~  326 (367)
T COG1485         248 LE-IKGREIRVPAVAGGLLWFDFAQLCEAPRSASDYLALAERFHTVFLTDVPQMDPLDRDEARRFIALVDELYDRGVKLV  326 (367)
T ss_pred             hh-ccCceeecccccCcchhccHHHHhhCcCCHHHHHHHHhhccEEEEcCCCCCChhhhHHHHHHHHHHHHHHhcCCcEE
Confidence            54 58999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCChhhhccCCCCCccccccccchhhhhhcccccchhhccCCCCCCCCCCCcccCCcchhHHHhHhhhHhhhhcccc
Q 012882          360 CSAASSIDDLFQGTEEGTLFDLESFQFETEIEGGKLRRDVLAEGTVSSGGAPAGIVSMLSGQEELFAFRRAWFVTVSTLV  439 (454)
Q Consensus       360 ~~a~~~~~~lf~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~ee~fAf~R~~SRl~eM~~  439 (454)
                      +||++||++||.+..                                                -.|+|+||+|||.||||
T Consensus       327 ~Sae~~~~~Ly~~~~------------------------------------------------~afeF~Rt~SRL~EMqS  358 (367)
T COG1485         327 ASAEVPLNELYQGGR------------------------------------------------LAFEFQRTLSRLQEMQS  358 (367)
T ss_pred             EEccCCHHHhccCch------------------------------------------------hhhHHHHHHHHHHHHHH
Confidence            999999999996431                                                17999999999999998


Q ss_pred             cccc
Q 012882          440 VDIN  443 (454)
Q Consensus       440 ~~~~  443 (454)
                      .+|.
T Consensus       359 ~~yl  362 (367)
T COG1485         359 EEYL  362 (367)
T ss_pred             HHhh
Confidence            8854

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.82  E-value=1.3e-20  Score=187.61  Aligned_cols=159  Identities=14%  Similarity=0.091  Sum_probs=118.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---HHHHHHHHHHHhhh--hhcccchhhhh--hcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---MLKINEHMHRLWKN--QVAEKSLRSSI--SGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---~~~~~~~i~~~~~~--~~~~~t~~e~l--~~~~~  112 (454)
                      ..++.-++|+|||||||||||++|+|.+.+ ..|...+.....   ...+.+.++++++.  .++.+|+.+++  ++..+
T Consensus        28 i~~Gei~gllG~NGAGKTTllk~l~gl~~p-~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~  106 (293)
T COG1131          28 VEPGEIFGLLGPNGAGKTTLLKILAGLLKP-TSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLY  106 (293)
T ss_pred             EcCCeEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHh
Confidence            345666999999999999999999999975 345555544333   24677788999887  57889999998  44444


Q ss_pred             CCC--CChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882          113 NLP--FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS  182 (454)
Q Consensus       113 ~~~--~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~  182 (454)
                      ...  .....+++++..+++....      ....+.++.++       .||+++|+|||||||+ +||+..+..++++|+
T Consensus       107 ~~~~~~~~~~~~~~l~~~~L~~~~------~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~  180 (293)
T COG1131         107 GLSKEEAEERIEELLELFGLEDKA------NKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLR  180 (293)
T ss_pred             CCChhHHHHHHHHHHHHcCCchhh------CcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHH
Confidence            443  2346788889888885411      22345555554       5889999999999999 999999999999999


Q ss_pred             HHHhCC-c-EEEEecCCCccchhcC
Q 012882          183 RLLSTG-T-VLVATSNRAPWDLNQD  205 (454)
Q Consensus       183 ~L~~~G-~-vlV~ThN~~P~dLy~~  205 (454)
                      .+.++| + |+++||+....+..++
T Consensus       181 ~l~~~g~~tvlissH~l~e~~~~~d  205 (293)
T COG1131         181 ELAKEGGVTILLSTHILEEAEELCD  205 (293)
T ss_pred             HHHhCCCcEEEEeCCcHHHHHHhCC
Confidence            999987 5 8888887544343333

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.82  E-value=3e-20  Score=175.01  Aligned_cols=185  Identities=15%  Similarity=0.152  Sum_probs=141.7

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh--hhcccchhhhh--hccccCC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN--QVAEKSLRSSI--SGWITNL  114 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~--~~~~~t~~e~l--~~~~~~~  114 (454)
                      ..++++-++|+|+||+||||++++|.|.+++ ..+...+........+..+|+|++.+  +++.+|+.+.+  ++.+.++
T Consensus        24 ~v~~G~i~GllG~NGAGKTTtfRmILglle~-~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm  102 (300)
T COG4152          24 EVPPGEIFGLLGPNGAGKTTTFRMILGLLEP-TEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGM  102 (300)
T ss_pred             eecCCeEEEeecCCCCCccchHHHHhccCCc-cCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCC
Confidence            3456788999999999999999999999985 46777777777778889999999988  67888998887  6777777


Q ss_pred             CCCh--HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh---hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCC
Q 012882          115 PFDS--KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ---HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTG  188 (454)
Q Consensus       115 ~~~~--~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~---rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G  188 (454)
                      +..+  ...+.+++.+.+....  .+.+..+++...+.-   .+++++|++||||||+ +|||.+...|.+.+.++.++|
T Consensus       103 ~~~e~~~~~~~wLer~~i~~~~--~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~G  180 (300)
T COG4152         103 PKAEIQKKLQAWLERLEIVGKK--TKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEG  180 (300)
T ss_pred             cHHHHHHHHHHHHHhccccccc--cchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcC
Confidence            6655  4566777777765432  233344444332221   5788999999999999 999999999999999999999


Q ss_pred             c-EEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCchhhhh
Q 012882          189 T-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRR  236 (454)
Q Consensus       189 ~-vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~DyR~  236 (454)
                      . ||++||++.-.+..|+.+          ++.+++..|.-+.-.|.|+
T Consensus       181 atIifSsH~Me~vEeLCD~l----------lmL~kG~~V~~G~v~~ir~  219 (300)
T COG4152         181 ATIIFSSHRMEHVEELCDRL----------LMLKKGQTVLYGTVEDIRR  219 (300)
T ss_pred             CEEEEecchHHHHHHHhhhh----------heecCCceEEeccHHHHHH
Confidence            9 888888877666666653          3445666665555567776

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.80  E-value=1.1e-19  Score=166.84  Aligned_cols=178  Identities=16%  Similarity=0.140  Sum_probs=126.7

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---HHHHHHHHHHhhh--hhcccchhhhh--hcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---LKINEHMHRLWKN--QVAEKSLRSSI--SGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---~~~~~~i~~~~~~--~~~~~t~~e~l--~~~~~  112 (454)
                      ..-++-++|+|+||+||||++++|++.+.| ..++..+...+..   ..+.+.++.+..+  ++..+|+.|++  |+.++
T Consensus        25 ae~Gei~GlLG~NGAGKTT~LRmiatlL~P-~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~  103 (245)
T COG4555          25 AEEGEITGLLGENGAGKTTLLRMIATLLIP-DSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN  103 (245)
T ss_pred             eccceEEEEEcCCCCCchhHHHHHHHhccC-CCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh
Confidence            345677999999999999999999999875 3666666544332   2456666666544  67788999998  66676


Q ss_pred             CCCCCh--HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882          113 NLPFDS--KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS  182 (454)
Q Consensus       113 ~~~~~~--~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~  182 (454)
                      ++....  .+.+++...+++..      .+..-+..++.++       |||+++|++|+||||+ +||+.+...+.+++.
T Consensus       104 ~l~~~~~kari~~l~k~l~l~~------~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~  177 (245)
T COG4555         104 GLSRKEIKARIAELSKRLQLLE------YLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIK  177 (245)
T ss_pred             hhhhhHHHHHHHHHHHHhChHH------HHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHH
Confidence            665553  55667767666633      2333444444443       7999999999999999 999999999999999


Q ss_pred             HHHhCCc-EEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCchhh
Q 012882          183 RLLSTGT-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDY  234 (454)
Q Consensus       183 ~L~~~G~-vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~Dy  234 (454)
                      .+.+.|. ||++||.....+-.|+++          ++.+.++++..++....
T Consensus       178 q~k~egr~viFSSH~m~EvealCDrv----------ivlh~Gevv~~gs~~~l  220 (245)
T COG4555         178 QLKNEGRAVIFSSHIMQEVEALCDRV----------IVLHKGEVVLEGSIEAL  220 (245)
T ss_pred             HhhcCCcEEEEecccHHHHHHhhheE----------EEEecCcEEEcCCHHHH
Confidence            9999888 888888764444344442          34455666655555333

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.79  E-value=1.4e-19  Score=174.13  Aligned_cols=151  Identities=14%  Similarity=0.082  Sum_probs=106.5

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH-HHHHHHHHHhhhh----hcccchhhhhhccccCC-
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML-KINEHMHRLWKNQ----VAEKSLRSSISGWITNL-  114 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~-~~~~~i~~~~~~~----~~~~t~~e~l~~~~~~~-  114 (454)
                      ..+.-+.|+||||+|||||++++.|.++| ..+...+....... .-..+++|++|..    .-..|+.+.+....... 
T Consensus        28 ~~G~~~~iiGPNGaGKSTLlK~iLGll~p-~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~  106 (254)
T COG1121          28 EKGEITALIGPNGAGKSTLLKAILGLLKP-SSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKK  106 (254)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCcC-CcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccc
Confidence            45677999999999999999999998874 24444432221111 1125789999863    23357888774432221 


Q ss_pred             -------CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          115 -------PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       115 -------~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                             ..+...+++.++..++.+.      ..+-..+|++++       |||+++|+||+||||+ ++|+.++..+.+
T Consensus       107 g~~~~~~~~d~~~v~~aL~~Vgm~~~------~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~  180 (254)
T COG1121         107 GWFRRLNKKDKEKVDEALERVGMEDL------RDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYD  180 (254)
T ss_pred             cccccccHHHHHHHHHHHHHcCchhh------hCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHH
Confidence                   1122566667777666432      122334556665       7999999999999999 899999999999


Q ss_pred             HHHHHHhCCc-EEEEecCCC
Q 012882          180 IVSRLLSTGT-VLVATSNRA  198 (454)
Q Consensus       180 ll~~L~~~G~-vlV~ThN~~  198 (454)
                      +|.+|.++|+ ||++|||..
T Consensus       181 lL~~l~~eg~tIl~vtHDL~  200 (254)
T COG1121         181 LLKELRQEGKTVLMVTHDLG  200 (254)
T ss_pred             HHHHHHHCCCEEEEEeCCcH
Confidence            9999999998 999999953

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.78  E-value=2.9e-19  Score=172.66  Aligned_cols=158  Identities=13%  Similarity=0.063  Sum_probs=112.9

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh--hhcccchhhhhhccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN--QVAEKSLRSSISGWI  111 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~  111 (454)
                      .+.++-+.|+||||||||||+++|+|.+++   .++.|...+-      ..++.+.+++++|.  ....+|+.+.+....
T Consensus        25 i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p---~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR  101 (258)
T COG1120          25 IPKGEITGILGPNGSGKSTLLKCLAGLLKP---KSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGR  101 (258)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcC
Confidence            456788999999999999999999999974   2344544432      23567788899887  456788998884443


Q ss_pred             cCC--C---CCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          112 TNL--P---FDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       112 ~~~--~---~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      .+.  .   +..   ..+++.+...++...      ..+....+++++       +||+++|++|+||||| .||+..+.
T Consensus       102 ~p~~~~~~~~~~~D~~~v~~aL~~~~~~~l------a~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~  175 (258)
T COG1120         102 YPHLGLFGRPSKEDEEIVEEALELLGLEHL------ADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQI  175 (258)
T ss_pred             CcccccccCCCHhHHHHHHHHHHHhCcHHH------hcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHH
Confidence            331  1   122   345555666665332      122344556654       6889999999999999 79999999


Q ss_pred             HHHHHHHHHHh-CCc-EEEEecCCCccchhcCC
Q 012882          176 ALSGIVSRLLS-TGT-VLVATSNRAPWDLNQDG  206 (454)
Q Consensus       176 ~L~~ll~~L~~-~G~-vlV~ThN~~P~dLy~~~  206 (454)
                      .+.++++.+.+ +|. +|+++|+..-+-.|++.
T Consensus       176 evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~  208 (258)
T COG1120         176 EVLELLRDLNREKGLTVVMVLHDLNLAARYADH  208 (258)
T ss_pred             HHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence            99999999994 577 99999986555555543

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.77  E-value=4.4e-19  Score=177.79  Aligned_cols=160  Identities=16%  Similarity=0.101  Sum_probs=108.7

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---HHHHHHHHHHHhhh--hhcccchhhhhh--cccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---MLKINEHMHRLWKN--QVAEKSLRSSIS--GWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---~~~~~~~i~~~~~~--~~~~~t~~e~l~--~~~~  112 (454)
                      ..++.-++|+||||||||||+++|+|.+++ ..|...+.....   .....+.+++++|.  ....+|+.+++.  ....
T Consensus        30 i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p-~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~  108 (306)
T PRK13537         30 VQRGECFGLLGPNGAGKTTTLRMLLGLTHP-DAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF  108 (306)
T ss_pred             EeCCcEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc
Confidence            345677999999999999999999999875 345444433221   12345667777776  455678888873  2222


Q ss_pred             CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882          113 NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS  182 (454)
Q Consensus       113 ~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~  182 (454)
                      .....  ....+.++..+++...      .......+++++       +||+++|++|+||||+ +||+..+..+++++.
T Consensus       109 ~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~  182 (306)
T PRK13537        109 GLSAAAARALVPPLLEFAKLENK------ADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLR  182 (306)
T ss_pred             CCCHHHHHHHHHHHHHHcCCchH------hcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence            22211  1334455555555321      122234555554       6899999999999999 899999999999999


Q ss_pred             HHHhCCc-EEEEecCCCccchhcCC
Q 012882          183 RLLSTGT-VLVATSNRAPWDLNQDG  206 (454)
Q Consensus       183 ~L~~~G~-vlV~ThN~~P~dLy~~~  206 (454)
                      ++.++|. ||++||+....+-++++
T Consensus       183 ~l~~~g~till~sH~l~e~~~~~d~  207 (306)
T PRK13537        183 SLLARGKTILLTTHFMEEAERLCDR  207 (306)
T ss_pred             HHHhCCCEEEEECCCHHHHHHhCCE
Confidence            9987787 88888886444434443

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.77  E-value=2.1e-18  Score=157.26  Aligned_cols=151  Identities=16%  Similarity=0.214  Sum_probs=103.7

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-------HHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-------LKINEHMHRLWKN--QVAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-------~~~~~~i~~~~~~--~~~~~t~~e~l~~~  110 (454)
                      .+.+.-+||.||+|+||||||++|++...| ..++..+..++..       ..+++.++.+.|+  +....|+.+|+...
T Consensus        25 i~~Gef~fl~GpSGAGKSTllkLi~~~e~p-t~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p  103 (223)
T COG2884          25 IPKGEFVFLTGPSGAGKSTLLKLIYGEERP-TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP  103 (223)
T ss_pred             ecCceEEEEECCCCCCHHHHHHHHHhhhcC-CCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence            445667999999999999999999998864 3454444333322       2345566666665  45666777776333


Q ss_pred             ccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          111 ITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       111 ~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                      +.-.....    +++.+++...++.++      ...+-..++++.       ||++.+|+||+-|||| .+|+..+..+.
T Consensus       104 L~v~G~~~~~i~~rV~~~L~~VgL~~k------~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im  177 (223)
T COG2884         104 LRVIGKPPREIRRRVSEVLDLVGLKHK------ARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM  177 (223)
T ss_pred             hhccCCCHHHHHHHHHHHHHHhccchh------hhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHH
Confidence            33222222    333444444444332      222333444443       7888999999999999 69999999999


Q ss_pred             HHHHHHHhCCc-EEEEecCC
Q 012882          179 GIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       179 ~ll~~L~~~G~-vlV~ThN~  197 (454)
                      ++|.++...|+ |+|+|||.
T Consensus       178 ~lfeeinr~GtTVl~ATHd~  197 (223)
T COG2884         178 RLFEEINRLGTTVLMATHDL  197 (223)
T ss_pred             HHHHHHhhcCcEEEEEeccH
Confidence            99999999999 99999994

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.76  E-value=2.3e-18  Score=163.40  Aligned_cols=157  Identities=16%  Similarity=0.112  Sum_probs=120.2

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh--hhcccchhhhhhccccC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN--QVAEKSLRSSISGWITN  113 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~  113 (454)
                      .+.+.-+.|+||+||||||+|+||...+.| ..|...+.....    ...++..++|+-|.  +.+.+|+.+|+..-+..
T Consensus        24 I~~gef~vliGpSGsGKTTtLkMINrLiep-t~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L  102 (309)
T COG1125          24 IEEGEFLVLIGPSGSGKTTTLKMINRLIEP-TSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKL  102 (309)
T ss_pred             ecCCeEEEEECCCCCcHHHHHHHHhcccCC-CCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhh
Confidence            345677999999999999999999999975 355555544332    24678899999887  68999999998665555


Q ss_pred             CCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882          114 LPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV  181 (454)
Q Consensus       114 ~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll  181 (454)
                      ..|+.    .++++++...++...    ....+.-.++++++       |||+.+|+||++|||+ .+|+-++..|.+.+
T Consensus       103 ~~w~k~~i~~r~~ELl~lvgL~p~----~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~  178 (309)
T COG1125         103 LGWDKERIKKRADELLDLVGLDPS----EYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEI  178 (309)
T ss_pred             cCCCHHHHHHHHHHHHHHhCCCHH----HHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHH
Confidence            55665    455667777766421    22344556677775       8999999999999999 69999999999999


Q ss_pred             HHHHhC-Cc-EEEEecCCCccc
Q 012882          182 SRLLST-GT-VLVATSNRAPWD  201 (454)
Q Consensus       182 ~~L~~~-G~-vlV~ThN~~P~d  201 (454)
                      .++.++ |+ ++++||+...+-
T Consensus       179 ~~lq~~l~kTivfVTHDidEA~  200 (309)
T COG1125         179 KELQKELGKTIVFVTHDIDEAL  200 (309)
T ss_pred             HHHHHHhCCEEEEEecCHHHHH
Confidence            999865 66 999999975443

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.76  E-value=2e-18  Score=160.53  Aligned_cols=151  Identities=14%  Similarity=0.157  Sum_probs=107.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEech-----hHHHHHHHHHHHhhh--hhcccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE-----AMLKINEHMHRLWKN--QVAEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~-----f~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~  112 (454)
                      ...+.-+.|+||+|||||||++||.+.-++ ..|...+....     -...+++.++.+.|.  +++.+|+.+|+...+.
T Consensus        25 v~~Gevv~iiGpSGSGKSTlLRclN~LE~~-~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~  103 (240)
T COG1126          25 VEKGEVVVIIGPSGSGKSTLLRCLNGLEEP-DSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV  103 (240)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHCCcCC-CCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence            345677999999999999999999997763 23433333311     233456667777776  6788888888733222


Q ss_pred             ---CCCCCh--HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          113 ---NLPFDS--KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       113 ---~~~~~~--~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                         ..+..+  ..+..++...++.++      .......|++++       |||+.+|++++||||| .|||.....+..
T Consensus       104 ~v~~~~k~eA~~~A~~lL~~VGL~~k------a~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~  177 (240)
T COG1126         104 KVKKLSKAEAREKALELLEKVGLADK------ADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLD  177 (240)
T ss_pred             HHcCCCHHHHHHHHHHHHHHcCchhh------hhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHH
Confidence               222222  344455566665432      233344566665       7889999999999999 799999999999


Q ss_pred             HHHHHHhCCc-EEEEecCC
Q 012882          180 IVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       180 ll~~L~~~G~-vlV~ThN~  197 (454)
                      ++..|.+.|. .+++||..
T Consensus       178 vm~~LA~eGmTMivVTHEM  196 (240)
T COG1126         178 VMKDLAEEGMTMIIVTHEM  196 (240)
T ss_pred             HHHHHHHcCCeEEEEechh
Confidence            9999999998 99999986

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.76  E-value=3.8e-18  Score=163.22  Aligned_cols=188  Identities=16%  Similarity=0.161  Sum_probs=123.7

Q ss_pred             eeecccCCccccCcccccc-cccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEech
Q 012882            3 VSVRKNPENVEPGVGRWVS-YLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE   81 (454)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~   81 (454)
                      ++|.|--+-++|+..+..+ +..++++....+..-+...+++.-++++|+||+||||++|+|.|.+.| ..|+.+|....
T Consensus         9 l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p-~~G~v~V~G~~   87 (325)
T COG4586           9 LSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLP-TSGKVRVNGKD   87 (325)
T ss_pred             cccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcccc-CCCeEEecCcC
Confidence            6788988999999666665 666776666666655556666777999999999999999999998865 47888887654


Q ss_pred             hHH---HHHHHHHHHhhh---hhcccchhhhh--hccccCCCCCh--HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh
Q 012882           82 AML---KINEHMHRLWKN---QVAEKSLRSSI--SGWITNLPFDS--KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ  151 (454)
Q Consensus        82 f~~---~~~~~i~~~~~~---~~~~~t~~e~l--~~~~~~~~~~~--~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~  151 (454)
                      ...   +..+.++++...   ...++.+.+.+  ....+..+.+.  ++.+.+.+.+++.+      .+..-.+.++.++
T Consensus        88 Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~------~lk~~vr~LSlGq  161 (325)
T COG4586          88 PFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEG------FLKWPVRKLSLGQ  161 (325)
T ss_pred             cchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchh------hhhhhhhhccchH
Confidence            432   222333333211   11222222211  11112222222  34444444444432      2333344555444


Q ss_pred             -------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          152 -------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       152 -------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                             .+|+++|+||+||||| +||+..+..+.+.++++.+. +. |+.+||+.
T Consensus       162 RmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~  217 (325)
T COG4586         162 RMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIF  217 (325)
T ss_pred             HHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecch
Confidence                   5889999999999999 89999999999999999864 66 88888875

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.75  E-value=1.6e-18  Score=173.34  Aligned_cols=151  Identities=15%  Similarity=0.087  Sum_probs=104.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---HHHHHHHHHHHhhh--hhcccchhhhhhc--ccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---MLKINEHMHRLWKN--QVAEKSLRSSISG--WIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---~~~~~~~i~~~~~~--~~~~~t~~e~l~~--~~~  112 (454)
                      ..++.-++|+||||||||||+++|+|.+++ ..|...+.....   .....+.+++++|.  ....+|+.+++..  ...
T Consensus        16 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~   94 (302)
T TIGR01188        16 VREGEVFGFLGPNGAGKTTTIRMLTTLLRP-TSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLY   94 (302)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHc
Confidence            356778999999999999999999999874 244333322211   12345567777766  4456788888732  122


Q ss_pred             CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882          113 NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS  182 (454)
Q Consensus       113 ~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~  182 (454)
                      .....  ...+++++..+++...      .......+++++       +||+.+|++|+||||+ +||+..+..+.++|.
T Consensus        95 ~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~  168 (302)
T TIGR01188        95 GLPKDEAEERAEELLELFELGEA------ADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIR  168 (302)
T ss_pred             CCCHHHHHHHHHHHHHHcCChhH------hCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence            22111  1345566666666321      122334555554       6889999999999999 899999999999999


Q ss_pred             HHHhCCc-EEEEecCC
Q 012882          183 RLLSTGT-VLVATSNR  197 (454)
Q Consensus       183 ~L~~~G~-vlV~ThN~  197 (454)
                      ++.++|. ||++||+.
T Consensus       169 ~~~~~g~tvi~~sH~~  184 (302)
T TIGR01188       169 ALKEEGVTILLTTHYM  184 (302)
T ss_pred             HHHhCCCEEEEECCCH
Confidence            9987777 88999985

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.75  E-value=3.6e-18  Score=161.06  Aligned_cols=156  Identities=14%  Similarity=0.152  Sum_probs=106.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-------HHHHHHHHHHhhh--hhcccchhhhhhc-
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-------LKINEHMHRLWKN--QVAEKSLRSSISG-  109 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-------~~~~~~i~~~~~~--~~~~~t~~e~l~~-  109 (454)
                      ...++-+.++||+|+||||||+++.|.++|. ++..+++..+..       ..+.++++.+.|.  ++..+|+.||+.- 
T Consensus        31 V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~-~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafp  109 (263)
T COG1127          31 VPRGEILAILGGSGSGKSTLLRLILGLLRPD-KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFP  109 (263)
T ss_pred             ecCCcEEEEECCCCcCHHHHHHHHhccCCCC-CCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhhee
Confidence            3456669999999999999999999999863 666666655432       2455566666665  6778888888832 


Q ss_pred             cccCCCCChHHHHHH-HHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882          110 WITNLPFDSKVMEWV-AAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI  180 (454)
Q Consensus       110 ~~~~~~~~~~~~e~l-l~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l  180 (454)
                      -......+...++.+ +..+.+-+..+  ......-.++++++       ||++.+|+||++|||+ ++||-++..+-+|
T Consensus       110 lre~~~lp~~~i~~lv~~KL~~VGL~~--~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~L  187 (263)
T COG1127         110 LREHTKLPESLIRELVLMKLELVGLRG--AAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDEL  187 (263)
T ss_pred             hHhhccCCHHHHHHHHHHHHHhcCCCh--hhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHH
Confidence            222222333333322 22222211110  11223344556665       7999999999999999 9999999999999


Q ss_pred             HHHHHhC-Cc-EEEEecCCC
Q 012882          181 VSRLLST-GT-VLVATSNRA  198 (454)
Q Consensus       181 l~~L~~~-G~-vlV~ThN~~  198 (454)
                      +.+|.+. |. ++++|||.+
T Consensus       188 I~~L~~~lg~T~i~VTHDl~  207 (263)
T COG1127         188 IRELNDALGLTVIMVTHDLD  207 (263)
T ss_pred             HHHHHHhhCCEEEEEECChH
Confidence            9999876 66 999999963

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.74  E-value=2.4e-18  Score=174.66  Aligned_cols=152  Identities=16%  Similarity=0.112  Sum_probs=103.0

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---HHHHHHHHHHHhhh--hhcccchhhhhh--cccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---MLKINEHMHRLWKN--QVAEKSLRSSIS--GWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---~~~~~~~i~~~~~~--~~~~~t~~e~l~--~~~~  112 (454)
                      ..++.-++|+|||||||||||++|+|.+++ ..|...+.....   .....+.++++++.  ....+|+.+++.  ...+
T Consensus        64 i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p-~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~  142 (340)
T PRK13536         64 VASGECFGLLGPNGAGKSTIARMILGMTSP-DAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF  142 (340)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHcCCCC-CceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc
Confidence            456788999999999999999999999875 244333332221   12344567777766  345678888873  2222


Q ss_pred             CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882          113 NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS  182 (454)
Q Consensus       113 ~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~  182 (454)
                      .....  ....+.++..+++...      .......+++++       +||+++|++|+||||+ +||+..+..++++|.
T Consensus       143 ~~~~~~~~~~~~~ll~~~~L~~~------~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~  216 (340)
T PRK13536        143 GMSTREIEAVIPSLLEFARLESK------ADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLR  216 (340)
T ss_pred             CCCHHHHHHHHHHHHHHcCCchh------hCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence            22111  1233455555555321      122234555554       6889999999999999 899999999999999


Q ss_pred             HHHhCCc-EEEEecCCC
Q 012882          183 RLLSTGT-VLVATSNRA  198 (454)
Q Consensus       183 ~L~~~G~-vlV~ThN~~  198 (454)
                      ++.+.|. ||++||+..
T Consensus       217 ~l~~~g~tilisSH~l~  233 (340)
T PRK13536        217 SLLARGKTILLTTHFME  233 (340)
T ss_pred             HHHhCCCEEEEECCCHH
Confidence            9988777 888998854

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.73  E-value=6.7e-18  Score=159.30  Aligned_cols=148  Identities=18%  Similarity=0.170  Sum_probs=99.6

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---HHHHHHHHHHhhhh---hcccchhhhhhccccCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---LKINEHMHRLWKNQ---VAEKSLRSSISGWITNL  114 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---~~~~~~i~~~~~~~---~~~~t~~e~l~~~~~~~  114 (454)
                      .+++-++|+||||||||||+++|+|..++ ..|  .+.+++..   ....+.++++.+..   ....|+.+++.......
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G--~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~  100 (205)
T cd03226          24 YAGEIIALTGKNGAGKTTLAKILAGLIKE-SSG--SILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL  100 (205)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCC-Cce--EEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhc
Confidence            46778999999999999999999999874 233  44443321   12233455555552   23457777763221111


Q ss_pred             CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh
Q 012882          115 PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS  186 (454)
Q Consensus       115 ~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~  186 (454)
                      ......+++++..+++...      .......+++++       +||+.+|++|+||||+ ++|+..+..+.++|.++.+
T Consensus       101 ~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~  174 (205)
T cd03226         101 DAGNEQAETVLKDLDLYAL------KERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA  174 (205)
T ss_pred             CccHHHHHHHHHHcCCchh------cCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence            1222455666666666321      122234455554       6888999999999999 8999999999999999977


Q ss_pred             CCc-EEEEecCC
Q 012882          187 TGT-VLVATSNR  197 (454)
Q Consensus       187 ~G~-vlV~ThN~  197 (454)
                      +|. +|++||+.
T Consensus       175 ~~~tii~~sH~~  186 (205)
T cd03226         175 QGKAVIVITHDY  186 (205)
T ss_pred             CCCEEEEEeCCH
Confidence            776 89999984

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.73  E-value=1.4e-17  Score=158.29  Aligned_cols=149  Identities=15%  Similarity=0.234  Sum_probs=99.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---------HHHHHHHHHHhhh--hhcccchhhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---------LKINEHMHRLWKN--QVAEKSLRSSIS  108 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---------~~~~~~i~~~~~~--~~~~~t~~e~l~  108 (454)
                      ..+++-++|+||||||||||+++|+|.+++.   .+.+.+++..         ...++.+.++.|.  ....+|+.+++.
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~  102 (216)
T TIGR00960        26 ITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVA  102 (216)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHH
Confidence            3467889999999999999999999998742   3455554321         1133456666655  334567777763


Q ss_pred             cccc--CCCC--ChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882          109 GWIT--NLPF--DSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA  176 (454)
Q Consensus       109 ~~~~--~~~~--~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~  176 (454)
                      ....  ....  ....+++++..+++...      .......+++++       +||+.+|++|+||||+ ++|+..+..
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~  176 (216)
T TIGR00960       103 FPLRIIGVPPRDANERVSAALEKVGLEGK------AHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRD  176 (216)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHcCChhh------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHH
Confidence            2111  1111  11334455555555321      122234555554       6889999999999999 899999999


Q ss_pred             HHHHHHHHHhCCc-EEEEecCC
Q 012882          177 LSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       177 L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      +.++|.++.+.|. +|++||+.
T Consensus       177 l~~~l~~~~~~~~tii~vsH~~  198 (216)
T TIGR00960       177 IMRLFEEFNRRGTTVLVATHDI  198 (216)
T ss_pred             HHHHHHHHHHCCCEEEEEeCCH
Confidence            9999999977776 89999984

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.73  E-value=3.6e-18  Score=162.66  Aligned_cols=151  Identities=11%  Similarity=0.053  Sum_probs=104.3

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh--hhcccchhhhhhccccCC--C
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN--QVAEKSLRSSISGWITNL--P  115 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~--~  115 (454)
                      ...+.-+.|+||+|||||||+++++|...+. .+...+..... ......+.++.|+  +.+=+|+.+|+...+...  .
T Consensus        26 v~~GEfvsilGpSGcGKSTLLriiAGL~~p~-~G~V~~~g~~v-~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~  103 (248)
T COG1116          26 VEKGEFVAILGPSGCGKSTLLRLIAGLEKPT-SGEVLLDGRPV-TGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKS  103 (248)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCccc-CCCCCCEEEEeccCcccchhhHHhhheehhhccccc
Confidence            4567779999999999999999999988742 34333332211 2223344555554  455567777773333322  2


Q ss_pred             CC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHH
Q 012882          116 FD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLL  185 (454)
Q Consensus       116 ~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~  185 (454)
                      ..  ...++++++..++.+..      ...-+++++++       |||+.+|+||+||||+ .||..++..+.+.+..++
T Consensus       104 ~~e~~~~a~~~L~~VgL~~~~------~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw  177 (248)
T COG1116         104 KAEARERAKELLELVGLAGFE------DKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLW  177 (248)
T ss_pred             hHhHHHHHHHHHHHcCCcchh------hcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHH
Confidence            22  24566667777664422      23344566665       7899999999999999 699999999999999998


Q ss_pred             hC-Cc-EEEEecCCC
Q 012882          186 ST-GT-VLVATSNRA  198 (454)
Q Consensus       186 ~~-G~-vlV~ThN~~  198 (454)
                      ++ +. |+++|||..
T Consensus       178 ~~~~~TvllVTHdi~  192 (248)
T COG1116         178 EETRKTVLLVTHDVD  192 (248)
T ss_pred             HhhCCEEEEEeCCHH
Confidence            75 44 999999963

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.72  E-value=1.7e-17  Score=156.80  Aligned_cols=149  Identities=17%  Similarity=0.149  Sum_probs=100.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhccccC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWITN  113 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~  113 (454)
                      ..++.-++|+||||||||||+++|+|..++ ..  +.+.+++..    ....+.+.++.+.  .....|+.+++......
T Consensus        23 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-~~--G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~   99 (208)
T cd03268          23 VKKGEIYGFLGPNGAGKTTTMKIILGLIKP-DS--GEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARL   99 (208)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCcCC-Cc--eEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHh
Confidence            346788999999999999999999999874 23  444443321    1223345555554  33456777776221111


Q ss_pred             CCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHH
Q 012882          114 LPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLL  185 (454)
Q Consensus       114 ~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~  185 (454)
                      ........+.++..+++..      ........+++++       ++++.+|++|+||||+ ++|+.++..+.++|.++.
T Consensus       100 ~~~~~~~~~~~l~~~~l~~------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~  173 (208)
T cd03268         100 LGIRKKRIDEVLDVVGLKD------SAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLR  173 (208)
T ss_pred             cCCcHHHHHHHHHHcCCHH------HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHH
Confidence            1112344555666665532      1233344556554       6889999999999999 899999999999999998


Q ss_pred             hCCc-EEEEecCC
Q 012882          186 STGT-VLVATSNR  197 (454)
Q Consensus       186 ~~G~-vlV~ThN~  197 (454)
                      ++|. +|++||+.
T Consensus       174 ~~~~tii~~tH~~  186 (208)
T cd03268         174 DQGITVLISSHLL  186 (208)
T ss_pred             HCCCEEEEEcCCH
Confidence            7776 88899884

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.71  E-value=8.8e-18  Score=167.99  Aligned_cols=151  Identities=12%  Similarity=0.094  Sum_probs=103.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---HHHHHHHHHHHhhh--hhcccchhhhhhc--ccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---MLKINEHMHRLWKN--QVAEKSLRSSISG--WIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---~~~~~~~i~~~~~~--~~~~~t~~e~l~~--~~~  112 (454)
                      .+++.-++|+|||||||||||++|+|.+++ ..|...+.....   ...+.+.++++++.  ..+.+|+.+++..  ..+
T Consensus        25 i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~-~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~  103 (301)
T TIGR03522        25 AQKGRIVGFLGPNGAGKSTTMKIITGYLPP-DSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY  103 (301)
T ss_pred             EeCCeEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc
Confidence            356778999999999999999999999874 244443333221   12345567777766  4556788888732  122


Q ss_pred             CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882          113 NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS  182 (454)
Q Consensus       113 ~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~  182 (454)
                      .....  ....+.++..+++...      .......+++++       +||+++|++|+||||+ ++|+..+..+++++.
T Consensus       104 ~~~~~~~~~~~~~~l~~~gl~~~------~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~  177 (301)
T TIGR03522       104 GMKGQLLKQRVEEMIELVGLRPE------QHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIK  177 (301)
T ss_pred             CCCHHHHHHHHHHHHHHCCCchH------hcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence            22211  2345566666665322      223345556554       6899999999999999 899999999999999


Q ss_pred             HHHhCCc-EEEEecCCC
Q 012882          183 RLLSTGT-VLVATSNRA  198 (454)
Q Consensus       183 ~L~~~G~-vlV~ThN~~  198 (454)
                      ++.+ +. ||++||+..
T Consensus       178 ~~~~-~~tiii~sH~l~  193 (301)
T TIGR03522       178 NIGK-DKTIILSTHIMQ  193 (301)
T ss_pred             HhcC-CCEEEEEcCCHH
Confidence            9965 55 888888853

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.71  E-value=1.8e-17  Score=156.82  Aligned_cols=149  Identities=14%  Similarity=0.141  Sum_probs=99.4

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh---hcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ---VAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~---~~~~t~~e~l~~~  110 (454)
                      ..+++-++|+||||||||||+++|+|..++ ..|  .+.+++.      .....+.+.++.+..   ....|+.+++...
T Consensus        24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~-~~G--~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~  100 (211)
T cd03225          24 IKKGEFVLIVGPNGSGKSTLLRLLNGLLGP-TSG--EVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFG  100 (211)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCc--eEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHH
Confidence            346777999999999999999999999874 233  4444321      123345566766652   3456777776321


Q ss_pred             ccCCCCC----hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          111 ITNLPFD----SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       111 ~~~~~~~----~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                      .......    ...++.++..+++...      +......+++++       +||+.+|++|+||||+ ++|+..+..+.
T Consensus       101 ~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~  174 (211)
T cd03225         101 LENLGLPEEEIEERVEEALELVGLEGL------RDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELL  174 (211)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCcHhh------hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence            1111111    1234455555555321      112233455554       6888999999999999 89999999999


Q ss_pred             HHHHHHHhCCc-EEEEecCC
Q 012882          179 GIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       179 ~ll~~L~~~G~-vlV~ThN~  197 (454)
                      ++|.++.++|. +|++||+.
T Consensus       175 ~~l~~~~~~~~tvi~~sH~~  194 (211)
T cd03225         175 ELLKKLKAEGKTIIIVTHDL  194 (211)
T ss_pred             HHHHHHHHcCCEEEEEeCCH
Confidence            99999987777 89999984

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.71  E-value=2.7e-17  Score=156.43  Aligned_cols=148  Identities=20%  Similarity=0.179  Sum_probs=99.4

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-----HHHHHHHHHHHhhh--hhcccchhhhhhcc--c
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-----MLKINEHMHRLWKN--QVAEKSLRSSISGW--I  111 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-----~~~~~~~i~~~~~~--~~~~~t~~e~l~~~--~  111 (454)
                      .++.-++|+|+||||||||+++|+|..++ ..|  .+.+.+.     .....+.+.++.+.  .....|+.+++...  .
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G--~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~  105 (218)
T cd03266          29 KPGEVTGLLGPNGAGKTTTLRMLAGLLEP-DAG--FATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGL  105 (218)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCcCC-CCc--eEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHH
Confidence            46778999999999999999999999874 233  4444321     12234455566555  34446777776221  1


Q ss_pred             cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882          112 TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV  181 (454)
Q Consensus       112 ~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll  181 (454)
                      ......  ...+++++..+++..      .+......+++++       +|++.+|++|+||||+ ++|+.++..+.++|
T Consensus       106 ~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l  179 (218)
T cd03266         106 YGLKGDELTARLEELADRLGMEE------LLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFI  179 (218)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCHH------HHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence            111111  123445555555532      2233445566554       7889999999999999 89999999999999


Q ss_pred             HHHHhCCc-EEEEecCC
Q 012882          182 SRLLSTGT-VLVATSNR  197 (454)
Q Consensus       182 ~~L~~~G~-vlV~ThN~  197 (454)
                      .++.++|. +|++||+.
T Consensus       180 ~~~~~~~~tii~~tH~~  196 (218)
T cd03266         180 RQLRALGKCILFSTHIM  196 (218)
T ss_pred             HHHHHCCCEEEEEeCCH
Confidence            99987776 89999985

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.71  E-value=4e-17  Score=154.47  Aligned_cols=149  Identities=14%  Similarity=0.145  Sum_probs=97.9

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--HHHHHHHHHHHhhh--hhcccchhhhhhcc--ccC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--MLKINEHMHRLWKN--QVAEKSLRSSISGW--ITN  113 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--~~~~~~~i~~~~~~--~~~~~t~~e~l~~~--~~~  113 (454)
                      ..+++-++|+|+||||||||+++|+|.+++ ..  +.+.+++.  .......+.++.|.  .....|+.+++...  ...
T Consensus        23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~--G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~   99 (210)
T cd03269          23 VEKGEIFGLLGPNGAGKTTTIRMILGIILP-DS--GEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG   99 (210)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCC-Cc--eEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC
Confidence            346788999999999999999999999864 23  44554432  11223345555554  23446777776221  111


Q ss_pred             CCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHH
Q 012882          114 LPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSR  183 (454)
Q Consensus       114 ~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~  183 (454)
                      ....  ...+++++..+++...      .......+++++       ++++.+|++|+||||+ ++|+.++..+.+++..
T Consensus       100 ~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~  173 (210)
T cd03269         100 LKKEEARRRIDEWLERLELSEY------ANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRE  173 (210)
T ss_pred             CChHHHHHHHHHHHHHcCChHH------HhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence            1111  1234445555554321      122334455554       6888999999999999 8999999999999999


Q ss_pred             HHhCCc-EEEEecCC
Q 012882          184 LLSTGT-VLVATSNR  197 (454)
Q Consensus       184 L~~~G~-vlV~ThN~  197 (454)
                      +.++|. +|++||+.
T Consensus       174 ~~~~~~tii~~sH~~  188 (210)
T cd03269         174 LARAGKTVILSTHQM  188 (210)
T ss_pred             HHHCCCEEEEECCCH
Confidence            987776 88888874

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.71  E-value=3.3e-17  Score=155.88  Aligned_cols=149  Identities=15%  Similarity=0.168  Sum_probs=98.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH-H---------HHHHHHHHhhh--hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML-K---------INEHMHRLWKN--QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~-~---------~~~~i~~~~~~--~~~~~t~~e~l  107 (454)
                      ..+++-++|+||||||||||+++|+|.+++. .  +.+.+++... .         ..+.+.++.+.  .....|+.+++
T Consensus        27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~-~--G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l  103 (218)
T cd03255          27 IEKGEFVAIVGPSGSGKSTLLNILGGLDRPT-S--GEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENV  103 (218)
T ss_pred             EcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC-c--eeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHH
Confidence            3567889999999999999999999998742 3  4454433110 0         12335555554  33456777776


Q ss_pred             hccc--cCCCC--ChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          108 SGWI--TNLPF--DSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       108 ~~~~--~~~~~--~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      ....  .....  ....+++++..+++..      ........+++++       +||+.+|+||+||||+ ++|+..+.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~  177 (218)
T cd03255         104 ELPLLLAGVPKKERRERAEELLERVGLGD------RLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGK  177 (218)
T ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHcCCch------hhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHH
Confidence            3211  11111  0123445555555532      1222334555554       7889999999999999 89999999


Q ss_pred             HHHHHHHHHHh-CCc-EEEEecCC
Q 012882          176 ALSGIVSRLLS-TGT-VLVATSNR  197 (454)
Q Consensus       176 ~L~~ll~~L~~-~G~-vlV~ThN~  197 (454)
                      .+.++|.++.+ .|+ ||++||+.
T Consensus       178 ~l~~~l~~~~~~~~~tii~~sH~~  201 (218)
T cd03255         178 EVMELLRELNKEAGTTIVVVTHDP  201 (218)
T ss_pred             HHHHHHHHHHHhcCCeEEEEECCH
Confidence            99999999977 476 88999984

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.70  E-value=2.4e-17  Score=157.20  Aligned_cols=149  Identities=12%  Similarity=0.094  Sum_probs=98.7

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-----HHHHHHHHHHHhhh--hhcccchhhhhhcc--
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-----MLKINEHMHRLWKN--QVAEKSLRSSISGW--  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-----~~~~~~~i~~~~~~--~~~~~t~~e~l~~~--  110 (454)
                      ..++.-++|+|+||||||||+++|+|.+++ ..  +.+.+++.     .....+.+.++.+.  .....|+.+++...  
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~--G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~   99 (220)
T cd03265          23 VRRGEIFGLLGPNGAGKTTTIKMLTTLLKP-TS--GRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHAR   99 (220)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCC-Cc--eEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHH
Confidence            346778999999999999999999998864 23  34444331     11233445555554  23445777766221  


Q ss_pred             ccCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882          111 ITNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI  180 (454)
Q Consensus       111 ~~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l  180 (454)
                      .......  ...++.++..+++...      .......+++++       +|++.+|++|+||||+ ++|+..+..+.++
T Consensus       100 ~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~  173 (220)
T cd03265         100 LYGVPGAERRERIDELLDFVGLLEA------ADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEY  173 (220)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCCHHH------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHH
Confidence            1111111  1344555666655321      122234455554       6889999999999999 8999999999999


Q ss_pred             HHHHHhC-Cc-EEEEecCC
Q 012882          181 VSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       181 l~~L~~~-G~-vlV~ThN~  197 (454)
                      |.++.++ |. +|++||+.
T Consensus       174 l~~~~~~~~~tvi~~tH~~  192 (220)
T cd03265         174 IEKLKEEFGMTILLTTHYM  192 (220)
T ss_pred             HHHHHHhcCCEEEEEeCCH
Confidence            9999875 76 99999985

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.70  E-value=5.7e-17  Score=153.92  Aligned_cols=152  Identities=13%  Similarity=0.138  Sum_probs=102.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--------HHHHHHHHHHHhhh--hhcccchhhhhhc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--------MLKINEHMHRLWKN--QVAEKSLRSSISG  109 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--------~~~~~~~i~~~~~~--~~~~~t~~e~l~~  109 (454)
                      .+.+.-+.|+||+||||||||+++.+...| ..+...+...+.        ..--.+.++++.|.  +.+.+|+.||+..
T Consensus        28 i~~Ge~vaI~GpSGSGKSTLLniig~ld~p-t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~l  106 (226)
T COG1136          28 IEAGEFVAIVGPSGSGKSTLLNLLGGLDKP-TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVEL  106 (226)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcccCC-CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHh
Confidence            456777999999999999999999998865 333333332111        11123445566665  5677888888732


Q ss_pred             --cccCCCC--ChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882          110 --WITNLPF--DSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL  177 (454)
Q Consensus       110 --~~~~~~~--~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L  177 (454)
                        .....+.  .....+.++..+++.....     .....++++++       |||+.+|+||+.|||| .||..++..+
T Consensus       107 pl~~~~~~~~~~~~~~~~l~~~lgl~~~~~-----~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V  181 (226)
T COG1136         107 PLLIAGKSAGRRKRAAEELLEVLGLEDRLL-----KKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEV  181 (226)
T ss_pred             HHHHcCCChhHHHHHHHHHHHhcCChhhhc-----cCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHH
Confidence              1222222  1244556666656642111     12344556664       7899999999999999 6999999999


Q ss_pred             HHHHHHHHhC-Cc-EEEEecCC
Q 012882          178 SGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       178 ~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      .++|..+.++ |+ +||+|||.
T Consensus       182 ~~ll~~~~~~~g~tii~VTHd~  203 (226)
T COG1136         182 LELLRELNKERGKTIIMVTHDP  203 (226)
T ss_pred             HHHHHHHHHhcCCEEEEEcCCH
Confidence            9999999865 76 99999995

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.70  E-value=7.7e-17  Score=149.56  Aligned_cols=157  Identities=15%  Similarity=0.176  Sum_probs=104.6

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCC--CcccCceEEEechh--------HHHHHHHHHHHhhh-hhcccchhhhh
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE--GIVKHRQRFHFHEA--------MLKINEHMHRLWKN-QVAEKSLRSSI  107 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~--~~~~~k~rv~f~~f--------~~~~~~~i~~~~~~-~~~~~t~~e~l  107 (454)
                      ..+..+-..|+||+|||||||+++|.....  +...-.+.|.+.+.        ...++++++.+.|+ ..-.+|+.+|+
T Consensus        29 ~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp~SIydNV  108 (253)
T COG1117          29 DIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNV  108 (253)
T ss_pred             eccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCCchHHHHH
Confidence            344567799999999999999999976432  11223344544331        34667777777766 22236777776


Q ss_pred             hccccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          108 SGWITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       108 ~~~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      ...+.......    +.+|..+....+++  ...+.+..-+-.|++++       |||+-+|+||++|||+ .|||.+..
T Consensus       109 ayG~r~~g~~~~~ldeiVe~sLk~AaLWd--EVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~  186 (253)
T COG1117         109 AYGLRLHGIKDKELDEIVESSLKKAALWD--EVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTL  186 (253)
T ss_pred             HHhHHhhccchHHHHHHHHHHHHHhHhHH--HhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHH
Confidence            33322211111    33444444444432  12334444455566665       7999999999999999 79999999


Q ss_pred             HHHHHHHHHHhCCcEEEEecCC
Q 012882          176 ALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       176 ~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      .+.+++.+|.+.=+|+|+|||+
T Consensus       187 kIEeLi~eLk~~yTIviVTHnm  208 (253)
T COG1117         187 KIEELITELKKKYTIVIVTHNM  208 (253)
T ss_pred             HHHHHHHHHHhccEEEEEeCCH
Confidence            9999999999777799999996

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.70  E-value=4.6e-17  Score=154.41  Aligned_cols=149  Identities=17%  Similarity=0.221  Sum_probs=98.3

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---------HHHHHHHHHHhhh--hhcccchhhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---------LKINEHMHRLWKN--QVAEKSLRSSIS  108 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---------~~~~~~i~~~~~~--~~~~~t~~e~l~  108 (454)
                      ..+++-++|+||||||||||+++|+|.+++ ..  +++.+++.-         ....+.+.++.+.  .....|+.+++.
T Consensus        25 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~-~~--G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~  101 (214)
T TIGR02673        25 IRKGEFLFLTGPSGAGKTTLLKLLYGALTP-SR--GQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVA  101 (214)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CC--ceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHH
Confidence            356778999999999999999999999864 23  445443311         1233445555554  234467777763


Q ss_pred             ccc--cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882          109 GWI--TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA  176 (454)
Q Consensus       109 ~~~--~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~  176 (454)
                      ...  ......  ...++.++..+++...      .......+++++       +||+.+|++|+||||+ ++|+.++..
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~  175 (214)
T TIGR02673       102 LPLEVRGKKEREIQRRVGAALRQVGLEHK------ADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSER  175 (214)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCChhh------hhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHH
Confidence            211  111111  1234455555555321      122234555554       6889999999999999 899999999


Q ss_pred             HHHHHHHHHhCCc-EEEEecCC
Q 012882          177 LSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       177 L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      +.++|.++.++|. +|++||+.
T Consensus       176 l~~~l~~~~~~~~tii~~tH~~  197 (214)
T TIGR02673       176 ILDLLKRLNKRGTTVIVATHDL  197 (214)
T ss_pred             HHHHHHHHHHcCCEEEEEeCCH
Confidence            9999999977776 89999974

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.70  E-value=6.1e-17  Score=153.46  Aligned_cols=148  Identities=16%  Similarity=0.235  Sum_probs=97.8

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---------HHHHHHHHHHHhhh--hhcccchhhhhhc
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---------MLKINEHMHRLWKN--QVAEKSLRSSISG  109 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---------~~~~~~~i~~~~~~--~~~~~t~~e~l~~  109 (454)
                      .+++-++|+|+||||||||+++|+|.+++.   .+.+.+++.         .....+.+.++.|.  .....|+.+++..
T Consensus        25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~  101 (214)
T cd03292          25 SAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAF  101 (214)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHH
Confidence            467789999999999999999999998642   344444321         11234455666555  3444677777632


Q ss_pred             ccc--CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882          110 WIT--NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL  177 (454)
Q Consensus       110 ~~~--~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L  177 (454)
                      ...  .....  ...+++++..+++...      .......+++++       +||+.+|++|+||||+ ++|+.++..+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~  175 (214)
T cd03292         102 ALEVTGVPPREIRKRVPAALELVGLSHK------HRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEI  175 (214)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCCHHH------hhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHH
Confidence            211  11111  1233445555554321      122234455554       6889999999999999 8999999999


Q ss_pred             HHHHHHHHhCCc-EEEEecCC
Q 012882          178 SGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       178 ~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      .++|.++.++|. +|++||+.
T Consensus       176 ~~~l~~~~~~~~tiiivtH~~  196 (214)
T cd03292         176 MNLLKKINKAGTTVVVATHAK  196 (214)
T ss_pred             HHHHHHHHHcCCEEEEEeCCH
Confidence            999999977776 88888874

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.70  E-value=3.3e-17  Score=155.34  Aligned_cols=149  Identities=15%  Similarity=0.110  Sum_probs=99.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-HHHHHHHHHHHhhhhh----cccchhhhhhccccCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-MLKINEHMHRLWKNQV----AEKSLRSSISGWITNL  114 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-~~~~~~~i~~~~~~~~----~~~t~~e~l~~~~~~~  114 (454)
                      ..+++-++|+||||||||||+++|+|..++ ..  +.+.+++. ....+..+.++.|...    ...|+.+++.......
T Consensus        22 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-~~--G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~   98 (213)
T cd03235          22 VKPGEFLAIVGPNGAGKSTLLKAILGLLKP-TS--GSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGH   98 (213)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CC--CEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhccccc
Confidence            356778999999999999999999999864 23  45555432 1133455666666521    2357888773221110


Q ss_pred             ------CC--ChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          115 ------PF--DSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       115 ------~~--~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                            ..  .....+.++..+++...      .......+++++       +||+.+|++|+||||+ +||+..+..+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~  172 (213)
T cd03235          99 KGLFRRLSKADKAKVDEALERVGLSEL------ADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIY  172 (213)
T ss_pred             cccccCCCHHHHHHHHHHHHHcCCHHH------HhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence                  01  11334555555555321      111223445444       6888999999999999 89999999999


Q ss_pred             HHHHHHHhCCc-EEEEecCC
Q 012882          179 GIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       179 ~ll~~L~~~G~-vlV~ThN~  197 (454)
                      ++|.++.++|. +|++||+.
T Consensus       173 ~~l~~~~~~~~tvi~~sH~~  192 (213)
T cd03235         173 ELLRELRREGMTILVVTHDL  192 (213)
T ss_pred             HHHHHHHhcCCEEEEEeCCH
Confidence            99999987776 89999984

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.70  E-value=3.3e-17  Score=164.00  Aligned_cols=151  Identities=14%  Similarity=0.076  Sum_probs=100.4

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---HHHHHHHHHHHhhh--hhcccchhhhhhc--ccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---MLKINEHMHRLWKN--QVAEKSLRSSISG--WIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---~~~~~~~i~~~~~~--~~~~~t~~e~l~~--~~~  112 (454)
                      ..++.-++|+||||||||||+++|+|.+++ ..|...+.....   .......+++++|.  ....+|+.+++..  ...
T Consensus        27 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~  105 (303)
T TIGR01288        27 IARGECFGLLGPNGAGKSTIARMLLGMISP-DRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF  105 (303)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc
Confidence            356778999999999999999999999864 233333322111   12234556666665  3345688887732  111


Q ss_pred             CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882          113 NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS  182 (454)
Q Consensus       113 ~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~  182 (454)
                      .....  ...++.++..+++...      .......+++++       +||+.+|++|+||||+ ++|+..+..+.++|.
T Consensus       106 ~~~~~~~~~~~~~ll~~~~l~~~------~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~  179 (303)
T TIGR01288       106 GMSTREIEAVIPSLLEFARLESK------ADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLR  179 (303)
T ss_pred             CCCHHHHHHHHHHHHHHCCChhH------hcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence            11111  1233445555554321      122334556554       6889999999999999 899999999999999


Q ss_pred             HHHhCCc-EEEEecCC
Q 012882          183 RLLSTGT-VLVATSNR  197 (454)
Q Consensus       183 ~L~~~G~-vlV~ThN~  197 (454)
                      ++.++|. ||++||+.
T Consensus       180 ~~~~~g~til~~sH~~  195 (303)
T TIGR01288       180 SLLARGKTILLTTHFM  195 (303)
T ss_pred             HHHhCCCEEEEECCCH
Confidence            9987777 89999985

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.70  E-value=7.4e-17  Score=150.37  Aligned_cols=150  Identities=15%  Similarity=0.136  Sum_probs=98.0

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--------HHHHHHHHHHHhhhh---hcccchhhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--------MLKINEHMHRLWKNQ---VAEKSLRSSIS  108 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--------~~~~~~~i~~~~~~~---~~~~t~~e~l~  108 (454)
                      ..+++-++|+||||||||||+++|+|..++. .  +.+.+.+.        .......++++.+..   ....|+.+++.
T Consensus        15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~-~--G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~   91 (190)
T TIGR01166        15 AERGEVLALLGANGAGKSTLLLHLNGLLRPQ-S--GAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVA   91 (190)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-c--eeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHH
Confidence            4567889999999999999999999988742 3  34444321        112334455665542   22346777763


Q ss_pred             ccccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882          109 GWITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA  176 (454)
Q Consensus       109 ~~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~  176 (454)
                      ..........    ..+++++..+++...      .......+++++       +||+.+|++|+||||+ ++|+..+..
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~  165 (190)
T TIGR01166        92 FGPLNLGLSEAEVERRVREALTAVGASGL------RERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQ  165 (190)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCchhh------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence            2111111111    233445555555321      122234455544       6889999999999999 899999999


Q ss_pred             HHHHHHHHHhCCc-EEEEecCCC
Q 012882          177 LSGIVSRLLSTGT-VLVATSNRA  198 (454)
Q Consensus       177 L~~ll~~L~~~G~-vlV~ThN~~  198 (454)
                      +.++|.++.++|. +|++||+..
T Consensus       166 ~~~~l~~~~~~~~tili~sH~~~  188 (190)
T TIGR01166       166 MLAILRRLRAEGMTVVISTHDVD  188 (190)
T ss_pred             HHHHHHHHHHcCCEEEEEeeccc
Confidence            9999999987776 899999853

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.69  E-value=7.7e-17  Score=152.09  Aligned_cols=154  Identities=15%  Similarity=0.112  Sum_probs=100.9

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-----HHHHHHHHHHHhhh--hhcccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-----MLKINEHMHRLWKN--QVAEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-----~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~  112 (454)
                      ..+++-++|+|+||||||||+++|+|.+++. .  +.+.+++.     ....++.+.++.+.  .....|+.+++.....
T Consensus        24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~-~--G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~  100 (204)
T PRK13538         24 LNAGELVQIEGPNGAGKTSLLRILAGLARPD-A--GEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQR  100 (204)
T ss_pred             ECCCcEEEEECCCCCCHHHHHHHHhCCCCCC-C--cEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHH
Confidence            3567789999999999999999999998742 3  44554431     11223334444433  2344577777622111


Q ss_pred             CC-CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHH
Q 012882          113 NL-PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSR  183 (454)
Q Consensus       113 ~~-~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~  183 (454)
                      .. ......++.++..+++....      ......+++++       +|++.+|++|+||||+ ++|+.++..+.++|.+
T Consensus       101 ~~~~~~~~~~~~~l~~~gl~~~~------~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  174 (204)
T PRK13538        101 LHGPGDDEALWEALAQVGLAGFE------DVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQ  174 (204)
T ss_pred             hcCccHHHHHHHHHHHcCCHHHh------hCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            11 12234556666666664321      11233444443       6889999999999999 8999999999999999


Q ss_pred             HHhCCc-EEEEecCCCccch
Q 012882          184 LLSTGT-VLVATSNRAPWDL  202 (454)
Q Consensus       184 L~~~G~-vlV~ThN~~P~dL  202 (454)
                      +.++|. +|++||+...-+.
T Consensus       175 ~~~~~~tiii~sh~~~~i~~  194 (204)
T PRK13538        175 HAEQGGMVILTTHQDLPVAS  194 (204)
T ss_pred             HHHCCCEEEEEecChhhhcc
Confidence            977666 8999998644433

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.69  E-value=3.6e-17  Score=155.10  Aligned_cols=149  Identities=15%  Similarity=0.115  Sum_probs=97.2

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhccccC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWITN  113 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~  113 (454)
                      ..+++-++|+||||||||||+++|+|.+++. .  +.+.+++..    ....+.+.++.|.  .....|+.+++......
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~-~--G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~   99 (213)
T cd03259          23 VEPGEFLALLGPSGCGKTTLLRLIAGLERPD-S--GEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKL   99 (213)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-C--eEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHH
Confidence            3467789999999999999999999998642 3  344443211    1112345555554  33446777776321111


Q ss_pred             CCCC----hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882          114 LPFD----SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV  181 (454)
Q Consensus       114 ~~~~----~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll  181 (454)
                      ....    ...+++++..+++..      ........+++++       +||+.+|++|+||||+ ++|+.++..+.++|
T Consensus       100 ~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l  173 (213)
T cd03259         100 RGVPKAEIRARVRELLELVGLEG------LLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREEL  173 (213)
T ss_pred             cCCCHHHHHHHHHHHHHHcCChh------hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            1111    123445555555432      1222334555554       6889999999999999 89999999999999


Q ss_pred             HHHHh-CCc-EEEEecCC
Q 012882          182 SRLLS-TGT-VLVATSNR  197 (454)
Q Consensus       182 ~~L~~-~G~-vlV~ThN~  197 (454)
                      .++.+ .|. ||++||+.
T Consensus       174 ~~~~~~~~~tii~~sH~~  191 (213)
T cd03259         174 KELQRELGITTIYVTHDQ  191 (213)
T ss_pred             HHHHHHcCCEEEEEecCH
Confidence            99976 476 88999984

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.69  E-value=3.6e-17  Score=157.53  Aligned_cols=149  Identities=13%  Similarity=0.132  Sum_probs=98.9

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---------HHHHHHHHHHhhh--hhcccchhhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---------LKINEHMHRLWKN--QVAEKSLRSSIS  108 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---------~~~~~~i~~~~~~--~~~~~t~~e~l~  108 (454)
                      ..+++-++|+||||||||||+++|+|.+++. .|  .+.+++..         ....+.+.++.|.  ....+|+.+++.
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~-~G--~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~   99 (235)
T cd03261          23 VRRGEILAIIGPSGSGKSTLLRLIVGLLRPD-SG--EVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVA   99 (235)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ce--EEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHH
Confidence            3567889999999999999999999998742 33  44443211         1233445666655  344567777763


Q ss_pred             ccccCC-CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          109 GWITNL-PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       109 ~~~~~~-~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      ...... ....    ..++.++..+++..      ........+++++       +||+.+|+||+||||+ ++|+..+.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~  173 (235)
T cd03261         100 FPLREHTRLSEEEIREIVLEKLEAVGLRG------AEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASG  173 (235)
T ss_pred             HHHhhccCCCHHHHHHHHHHHHHHcCCch------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence            221110 1111    23344555555422      1122334556554       6889999999999999 89999999


Q ss_pred             HHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          176 ALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       176 ~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      .+.++|.++.++ |. ||++||+.
T Consensus       174 ~l~~~l~~~~~~~~~tvi~vsH~~  197 (235)
T cd03261         174 VIDDLIRSLKKELGLTSIMVTHDL  197 (235)
T ss_pred             HHHHHHHHHHHhcCcEEEEEecCH
Confidence            999999999863 66 89999984

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.69  E-value=8.1e-17  Score=152.52  Aligned_cols=151  Identities=13%  Similarity=0.090  Sum_probs=97.4

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh--hhcccchhhhhhccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN--QVAEKSLRSSISGWI  111 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~  111 (454)
                      ..+++-++|+||||||||||+++|+|..++ ..|...+.....      .......+.++.+.  .....|+.+++....
T Consensus        23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~  101 (213)
T cd03262          23 VKKGEVVVIIGPSGSGKSTLLRCINLLEEP-DSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAP  101 (213)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHH
Confidence            456788999999999999999999999874 234333322211      11233455666555  234467777763211


Q ss_pred             ---cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          112 ---TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       112 ---~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                         ......  ...++.++..+++..      .+......+++++       +|++.+|++|+||||+ ++|+.++..+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~  175 (213)
T cd03262         102 IKVKGMSKAEAEERALELLEKVGLAD------KADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVL  175 (213)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHcCCHh------HhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence               111111  123344444444422      1122233445444       6888999999999999 89999999999


Q ss_pred             HHHHHHHhCCc-EEEEecCC
Q 012882          179 GIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       179 ~ll~~L~~~G~-vlV~ThN~  197 (454)
                      ++|.++.+.|. +|++||+.
T Consensus       176 ~~l~~~~~~~~tvi~~sh~~  195 (213)
T cd03262         176 DVMKDLAEEGMTMVVVTHEM  195 (213)
T ss_pred             HHHHHHHHcCCEEEEEeCCH
Confidence            99999987776 88888874

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.69  E-value=5.6e-17  Score=156.54  Aligned_cols=149  Identities=14%  Similarity=0.135  Sum_probs=98.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---------HHHHHHHHHHHhhh--hhcccchhhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---------MLKINEHMHRLWKN--QVAEKSLRSSIS  108 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---------~~~~~~~i~~~~~~--~~~~~t~~e~l~  108 (454)
                      ..++.-++|+||||||||||+++|+|.+++ ..  +.+.+++.         .....+.+.+++|.  .....|+.+++.
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~--G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~  100 (241)
T cd03256          24 INPGEFVALIGPSGAGKSTLLRCLNGLVEP-TS--GSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVL  100 (241)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCcCC-CC--ceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHH
Confidence            356788999999999999999999999864 23  34444321         11234456666665  334567877763


Q ss_pred             ccccC----------CC--CChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-C
Q 012882          109 GWITN----------LP--FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-T  168 (454)
Q Consensus       109 ~~~~~----------~~--~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~  168 (454)
                      .....          ..  .....+.+++..+++...      .......+++++       +||+.+|+||+||||+ +
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~  174 (241)
T cd03256         101 SGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDK------AYQRADQLSGGQQQRVAIARALMQQPKLILADEPVAS  174 (241)
T ss_pred             hhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhh------hCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence            21110          00  011234455555555321      111223444443       6888999999999999 8


Q ss_pred             CCHHHHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          169 VDVFAIVALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       169 lD~~~a~~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      +|+..+..+.++|.++.++ |. ||++||+.
T Consensus       175 LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~  205 (241)
T cd03256         175 LDPASSRQVMDLLKRINREEGITVIVSLHQV  205 (241)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            9999999999999999764 66 89999985

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.69  E-value=2.8e-17  Score=169.97  Aligned_cols=152  Identities=16%  Similarity=0.125  Sum_probs=103.9

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh--hhcccchhhhhhccccC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN--QVAEKSLRSSISGWITN  113 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~  113 (454)
                      ...+.-++|+||||||||||+++|+|.+++ ..|...+.....    .....+.++++.|+  ....+|+.+++......
T Consensus        26 i~~Geiv~liGpNGaGKSTLLk~LaGll~p-~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~  104 (402)
T PRK09536         26 VREGSLVGLVGPNGAGKTTLLRAINGTLTP-TAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTP  104 (402)
T ss_pred             ECCCCEEEEECCCCchHHHHHHHHhcCCCC-CCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccch
Confidence            346788999999999999999999999874 244333322111    12345567777665  34567888887432211


Q ss_pred             ----CC-CC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882          114 ----LP-FD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL  177 (454)
Q Consensus       114 ----~~-~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L  177 (454)
                          .. ..   ...+++++..+++...      .......+++++       +||+++|+||+||||+ +||+..+..+
T Consensus       105 ~~~~~~~~~~~~~~~v~~~le~vgl~~~------~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l  178 (402)
T PRK09536        105 HRSRFDTWTETDRAAVERAMERTGVAQF------ADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRT  178 (402)
T ss_pred             hcccccCCCHHHHHHHHHHHHHcCCchh------hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence                11 11   2345566666665322      122234555554       7889999999999999 8999999999


Q ss_pred             HHHHHHHHhCCc-EEEEecCCC
Q 012882          178 SGIVSRLLSTGT-VLVATSNRA  198 (454)
Q Consensus       178 ~~ll~~L~~~G~-vlV~ThN~~  198 (454)
                      .++|.++.++|. +|++||+..
T Consensus       179 ~~lL~~l~~~g~TIIivsHdl~  200 (402)
T PRK09536        179 LELVRRLVDDGKTAVAAIHDLD  200 (402)
T ss_pred             HHHHHHHHhcCCEEEEEECCHH
Confidence            999999987776 888899853

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.68  E-value=6.5e-17  Score=155.67  Aligned_cols=149  Identities=15%  Similarity=0.117  Sum_probs=97.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HH-HHHHHHHHhhh--hhcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LK-INEHMHRLWKN--QVAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~-~~~~i~~~~~~--~~~~~t~~e~l~~~  110 (454)
                      ..+++-++|+||||||||||+++|+|.+++ ..|  .+.+++..      .. ....+.++.|.  ....+|+.+++...
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G--~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~   99 (236)
T cd03219          23 VRPGEIHGLIGPNGAGKTTLFNLISGFLRP-TSG--SVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVA   99 (236)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHcCCCCC-CCc--eEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHH
Confidence            346778999999999999999999999874 233  44443211      11 12235555554  34456788776321


Q ss_pred             ccC--CC---------CC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-C
Q 012882          111 ITN--LP---------FD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-T  168 (454)
Q Consensus       111 ~~~--~~---------~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~  168 (454)
                      ...  ..         ..   ...+++++..+++..      ........+++++       +||+.+|++|+||||+ +
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~  173 (236)
T cd03219         100 AQARTGSGLLLARARREEREARERAEELLERVGLAD------LADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAG  173 (236)
T ss_pred             HhhccccccccccccccHHHHHHHHHHHHHHcCccc------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence            111  00         01   123445555555522      1222334555554       6889999999999999 8


Q ss_pred             CCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          169 VDVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       169 lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      +|+.++..+.++|..+.+.|. +|++||+.
T Consensus       174 LD~~~~~~l~~~l~~~~~~~~tii~vsH~~  203 (236)
T cd03219         174 LNPEETEELAELIRELRERGITVLLVEHDM  203 (236)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence            999999999999999987776 88999974

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.68  E-value=5.6e-17  Score=154.96  Aligned_cols=148  Identities=18%  Similarity=0.179  Sum_probs=96.6

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHH--HHHHHHHHhhh--hhcccchhhhhhccccCCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLK--INEHMHRLWKN--QVAEKSLRSSISGWITNLPF  116 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~--~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~~~  116 (454)
                      .++.-++|.|+||+|||||+++|+|.+++ ..  +.+.+++....  ....+.++.+.  .....|+.+++.........
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~--G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~  100 (223)
T TIGR03740        24 PKNSVYGLLGPNGAGKSTLLKMITGILRP-TS--GEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGL  100 (223)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCC-Cc--eEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHcCC
Confidence            46788999999999999999999999874 23  34444321100  01234444443  23345666665221111112


Q ss_pred             ChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCC
Q 012882          117 DSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTG  188 (454)
Q Consensus       117 ~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G  188 (454)
                      +...+..++..+++..      ........+++++       +|++.+|++|+||||+ ++|+.++..+.++|.++.++|
T Consensus       101 ~~~~~~~~l~~~~l~~------~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~  174 (223)
T TIGR03740       101 PDSRIDEVLNIVDLTN------TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQG  174 (223)
T ss_pred             CHHHHHHHHHHcCCcH------HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCC
Confidence            2344555555555532      1223344555554       6889999999999999 899999999999999998777


Q ss_pred             c-EEEEecCC
Q 012882          189 T-VLVATSNR  197 (454)
Q Consensus       189 ~-vlV~ThN~  197 (454)
                      . +|++||+.
T Consensus       175 ~tiii~sH~~  184 (223)
T TIGR03740       175 ITVILSSHIL  184 (223)
T ss_pred             CEEEEEcCCH
Confidence            6 88888874

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.68  E-value=8.2e-17  Score=155.66  Aligned_cols=149  Identities=11%  Similarity=0.080  Sum_probs=98.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---------HHHHHHHHHHhhh--hhcccchhhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---------LKINEHMHRLWKN--QVAEKSLRSSIS  108 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---------~~~~~~i~~~~~~--~~~~~t~~e~l~  108 (454)
                      ..+++-++|+||||||||||+++|+|..++ ..  +.+.+++..         ......++++.+.  .....|+.+++.
T Consensus        25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~--G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~  101 (243)
T TIGR02315        25 INPGEFVAIIGPSGAGKSTLLRCINRLVEP-SS--GSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVL  101 (243)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCcCC-Cc--cEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHh
Confidence            356788999999999999999999999864 23  445443311         1234456666655  334567777773


Q ss_pred             ccccC----------CCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-C
Q 012882          109 GWITN----------LPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-T  168 (454)
Q Consensus       109 ~~~~~----------~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~  168 (454)
                      .....          ....  ...+++++..+++...      .......+++++       +||+.+|++|+||||+ +
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~  175 (243)
T TIGR02315       102 HGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADK------AYQRADQLSGGQQQRVAIARALAQQPDLILADEPIAS  175 (243)
T ss_pred             hcccccccchhhhhccccHHHHHHHHHHHHHcCcHhh------hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence            21110          0001  1234455555555321      112233445444       6888999999999999 8


Q ss_pred             CCHHHHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          169 VDVFAIVALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       169 lD~~~a~~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      +|+..+..+.++|.++.++ |. +|++||+.
T Consensus       176 LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~  206 (243)
T TIGR02315       176 LDPKTSKQVMDYLKRINKEDGITVIINLHQV  206 (243)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            9999999999999999754 66 88999984

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.68  E-value=3.5e-17  Score=156.10  Aligned_cols=149  Identities=14%  Similarity=0.097  Sum_probs=96.0

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-HHHHHHHHHHhhh--hhcccchhhhhhcc--ccCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-LKINEHMHRLWKN--QVAEKSLRSSISGW--ITNL  114 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-~~~~~~i~~~~~~--~~~~~t~~e~l~~~--~~~~  114 (454)
                      ..+++-++|+||||||||||+++|+|..++ ..  +.+.+.+.. ....+.+.++.+.  .....|+.+++...  ....
T Consensus        27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-~~--G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~  103 (220)
T cd03293          27 VEEGEFVALVGPSGCGKSTLLRIIAGLERP-TS--GEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGV  103 (220)
T ss_pred             EeCCcEEEEECCCCCCHHHHHHHHhCCCCC-Cc--eEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCC
Confidence            346778999999999999999999998864 23  344443211 1122345555554  23445777766221  1111


Q ss_pred             CCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHH
Q 012882          115 PFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRL  184 (454)
Q Consensus       115 ~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L  184 (454)
                      ...  ...++.++..+++...      .......+++++       +||+.+|++|+||||+ ++|+.++..+.++|.++
T Consensus       104 ~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~  177 (220)
T cd03293         104 PKAEARERAEELLELVGLSGF------ENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDI  177 (220)
T ss_pred             CHHHHHHHHHHHHHHcCChhh------hhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence            111  1234455555555321      122234455554       6889999999999999 89999999999999998


Q ss_pred             Hh-CCc-EEEEecCC
Q 012882          185 LS-TGT-VLVATSNR  197 (454)
Q Consensus       185 ~~-~G~-vlV~ThN~  197 (454)
                      .+ .|. +|++||+.
T Consensus       178 ~~~~~~tiii~sH~~  192 (220)
T cd03293         178 WRETGKTVLLVTHDI  192 (220)
T ss_pred             HHHcCCEEEEEecCH
Confidence            65 466 88899874

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10908 cell division protein FtsE; Provisional

Probab=99.68  E-value=1.2e-16  Score=152.55  Aligned_cols=149  Identities=12%  Similarity=0.154  Sum_probs=97.3

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--H-------HHHHHHHHHHhhh--hhcccchhhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--M-------LKINEHMHRLWKN--QVAEKSLRSSIS  108 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--~-------~~~~~~i~~~~~~--~~~~~t~~e~l~  108 (454)
                      ..+++-++|+||||||||||+++|+|..++. .  +.+.+++.  .       ....+.+.++.|.  .....++.+++.
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~--G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~  101 (222)
T PRK10908         25 MRPGEMAFLTGHSGAGKSTLLKLICGIERPS-A--GKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVA  101 (222)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-c--eEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHH
Confidence            3567889999999999999999999998742 3  34444321  1       1133455666655  234567777763


Q ss_pred             ccccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882          109 GWITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA  176 (454)
Q Consensus       109 ~~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~  176 (454)
                      ..........    ..++.++..+++...      .......+++++       +|++.+|++|+||||+ ++|+..+..
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~  175 (222)
T PRK10908        102 IPLIIAGASGDDIRRRVSAALDKVGLLDK------AKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEG  175 (222)
T ss_pred             hHHHhcCCCHHHHHHHHHHHHHHcCChhh------hhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHH
Confidence            2211111111    123445555554321      112223444444       6888999999999999 899999999


Q ss_pred             HHHHHHHHHhCCc-EEEEecCC
Q 012882          177 LSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       177 L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      +.+++..+.++|. +|++||+.
T Consensus       176 l~~~l~~~~~~~~tiii~sH~~  197 (222)
T PRK10908        176 ILRLFEEFNRVGVTVLMATHDI  197 (222)
T ss_pred             HHHHHHHHHHCCCEEEEEeCCH
Confidence            9999999977666 88999984

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.68  E-value=1.4e-16  Score=150.10  Aligned_cols=148  Identities=13%  Similarity=0.124  Sum_probs=96.3

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----------HHHHHHHHHHhhh--hhcccchhhhhh
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----------LKINEHMHRLWKN--QVAEKSLRSSIS  108 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----------~~~~~~i~~~~~~--~~~~~t~~e~l~  108 (454)
                      .+++-++|+||||||||||+++++|.+++ ..|  .+.+.+..          ....+.++++.+.  .....|+.+++.
T Consensus        22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G--~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~   98 (206)
T TIGR03608        22 EKGKMYAIIGESGSGKSTLLNIIGLLEKF-DSG--QVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLD   98 (206)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCe--EEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHH
Confidence            46788999999999999999999999874 233  34443211          0122344555444  334467777662


Q ss_pred             cccc--CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882          109 GWIT--NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA  176 (454)
Q Consensus       109 ~~~~--~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~  176 (454)
                      ....  .....  ...++.++..+++...      .......+++++       +||+.+|++|+||||+ ++|+.++..
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~  172 (206)
T TIGR03608        99 LGLKYKKLSKKEKREKKKEALEKVGLNLK------LKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDE  172 (206)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHcCchhh------hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHH
Confidence            2111  11111  1334455555555221      122234455554       6889999999999999 899999999


Q ss_pred             HHHHHHHHHhCCc-EEEEecCC
Q 012882          177 LSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       177 L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      +.++|.++.++|. +|++||+.
T Consensus       173 l~~~l~~~~~~~~tii~~sh~~  194 (206)
T TIGR03608       173 VLDLLLELNDEGKTIIIVTHDP  194 (206)
T ss_pred             HHHHHHHHHhcCCEEEEEeCCH
Confidence            9999999987776 88888885

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.68  E-value=1.6e-16  Score=149.24  Aligned_cols=155  Identities=19%  Similarity=0.155  Sum_probs=98.0

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-----HHHHHHHHHHhhh--hhcccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-----LKINEHMHRLWKN--QVAEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~  112 (454)
                      ..++.-++|+||||||||||+++|+|..++. .  +.+.+.+..     ......+.++.+.  .....|+.+++.....
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~--G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~   99 (198)
T TIGR01189        23 LNAGEALQVTGPNGIGKTTLLRILAGLLRPD-S--GEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAA   99 (198)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-c--cEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHH
Confidence            3467789999999999999999999988642 3  344443211     1122334444443  2234566666522111


Q ss_pred             CCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHH
Q 012882          113 NLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRL  184 (454)
Q Consensus       113 ~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L  184 (454)
                      ........+++++..+++....      ......+++++       +|++.+|++|+||||+ ++|+.++..+.+++..+
T Consensus       100 ~~~~~~~~~~~~l~~~~l~~~~------~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  173 (198)
T TIGR01189       100 IHGGAQRTIEDALAAVGLTGFE------DLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAH  173 (198)
T ss_pred             HcCCcHHHHHHHHHHcCCHHHh------cCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence            1111123345555555553211      11223445443       6888999999999999 89999999999999998


Q ss_pred             HhCCc-EEEEecCCCccchhcC
Q 012882          185 LSTGT-VLVATSNRAPWDLNQD  205 (454)
Q Consensus       185 ~~~G~-vlV~ThN~~P~dLy~~  205 (454)
                      .++|. +|++||+.  .+++++
T Consensus       174 ~~~~~tii~~sH~~--~~~~~~  193 (198)
T TIGR01189       174 LARGGIVLLTTHQD--LGLVEA  193 (198)
T ss_pred             HhCCCEEEEEEccc--ccccce
Confidence            77776 88888874  444443

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.68  E-value=1.5e-16  Score=152.94  Aligned_cols=149  Identities=11%  Similarity=0.132  Sum_probs=98.7

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---------HHHHHHHHHHhhh--hhcccchhhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---------LKINEHMHRLWKN--QVAEKSLRSSIS  108 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---------~~~~~~i~~~~~~--~~~~~t~~e~l~  108 (454)
                      ..+++-++|+||||||||||+++|+|.+++ ..  +.+.+.+.-         ....+.+.++++.  ....+|+.+++.
T Consensus        28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~--G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~  104 (233)
T cd03258          28 VPKGEIFGIIGRSGAGKSTLIRCINGLERP-TS--GSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVA  104 (233)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CC--ceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHH
Confidence            456788999999999999999999999874 23  344443211         1123455666655  334567777763


Q ss_pred             ccccCCCCC----hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882          109 GWITNLPFD----SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA  176 (454)
Q Consensus       109 ~~~~~~~~~----~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~  176 (454)
                      .........    ...+++++..+++...      .......+++++       +||+.+|++|+||||+ ++|+..+..
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~  178 (233)
T cd03258         105 LPLEIAGVPKAEIEERVLELLELVGLEDK------ADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQS  178 (233)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHCCChhh------hhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHH
Confidence            211111111    1234455555555321      122234455554       6889999999999999 899999999


Q ss_pred             HHHHHHHHHhC-Cc-EEEEecCC
Q 012882          177 LSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       177 L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      +.++|.++.++ |. ||++||+.
T Consensus       179 l~~~l~~~~~~~~~tvii~sH~~  201 (233)
T cd03258         179 ILALLRDINRELGLTIVLITHEM  201 (233)
T ss_pred             HHHHHHHHHHHcCCEEEEEeCCH
Confidence            99999999765 76 88899874

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.67  E-value=1.6e-17  Score=152.50  Aligned_cols=150  Identities=17%  Similarity=0.167  Sum_probs=111.0

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------H-HHHHHHHHHHhhh--hhcccchhhhhhc
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------M-LKINEHMHRLWKN--QVAEKSLRSSISG  109 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~-~~~~~~i~~~~~~--~~~~~t~~e~l~~  109 (454)
                      ...++.-|+|+||||+||||.+.++.|.+++. .+  ++.+++.      | ...+..++|++|+  .+..+|+.+|+..
T Consensus        26 ~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d-~G--~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~  102 (243)
T COG1137          26 EVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD-SG--KILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMA  102 (243)
T ss_pred             EEcCCcEEEEECCCCCCceeEEEEEEEEEecC-Cc--eEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHH
Confidence            34567889999999999999999999999752 34  4444332      1 2344567899988  6888999999854


Q ss_pred             cccCCCCC----h--HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          110 WITNLPFD----S--KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       110 ~~~~~~~~----~--~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      -+.....+    .  ...+++++.+.+....      ...+..++++.       |||+.+|+.++||||+ +.||-+..
T Consensus       103 vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr------~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~  176 (243)
T COG1137         103 VLEIREKDLKKAERKEELDALLEEFHITHLR------DSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVI  176 (243)
T ss_pred             HHhhhhcchhHHHHHHHHHHHHHHhchHHHh------cCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHH
Confidence            43332222    2  2355788888775422      12233444443       6788999999999999 99999999


Q ss_pred             HHHHHHHHHHhCCc-EEEEecCC
Q 012882          176 ALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       176 ~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      .+.+++..|.++|. |+|+-||.
T Consensus       177 dIq~iI~~L~~rgiGvLITDHNV  199 (243)
T COG1137         177 DIQRIIKHLKDRGIGVLITDHNV  199 (243)
T ss_pred             HHHHHHHHHHhCCceEEEccccH
Confidence            99999999999999 99999995

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.67  E-value=1.2e-16  Score=153.45  Aligned_cols=149  Identities=19%  Similarity=0.165  Sum_probs=96.0

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HH-HHHHHHHHhhh--hhcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LK-INEHMHRLWKN--QVAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~-~~~~i~~~~~~--~~~~~t~~e~l~~~  110 (454)
                      ..++.-++|+|+||||||||+++|+|.+++ ..|  .+.+++..      .. ....+.++.+.  .....|+.+++...
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G--~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~   99 (232)
T cd03218          23 VKQGEIVGLLGPNGAGKTTTFYMIVGLVKP-DSG--KILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAV   99 (232)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCc--EEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHH
Confidence            346778999999999999999999999874 233  44443211      01 12234555554  33445777776321


Q ss_pred             c--cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          111 I--TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       111 ~--~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                      .  ......  ....+.++..+++..      ........+++++       +|++.+|++|+||||+ ++|+.++..+.
T Consensus       100 ~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~  173 (232)
T cd03218         100 LEIRGLSKKEREEKLEELLEEFHITH------LRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQ  173 (232)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHcCChh------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH
Confidence            1  111111  123344455544422      1122233455444       6888999999999999 89999999999


Q ss_pred             HHHHHHHhCCc-EEEEecCC
Q 012882          179 GIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       179 ~ll~~L~~~G~-vlV~ThN~  197 (454)
                      ++|.++.+.|. +|++||+.
T Consensus       174 ~~l~~~~~~~~tii~~sH~~  193 (232)
T cd03218         174 KIIKILKDRGIGVLITDHNV  193 (232)
T ss_pred             HHHHHHHHCCCEEEEEeCCH
Confidence            99999987776 88888874

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.67  E-value=5.1e-17  Score=166.02  Aligned_cols=148  Identities=18%  Similarity=0.198  Sum_probs=102.6

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhcccc--
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWIT--  112 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~--  112 (454)
                      ..++-++|+||||||||||+++|+|..++   ..+.+.+++..    ....+.++++.|.  ..+.+|+.+++.....  
T Consensus        28 ~~Ge~~~llG~sGsGKSTLLr~iaGl~~p---~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~  104 (356)
T PRK11650         28 ADGEFIVLVGPSGCGKSTLLRMVAGLERI---TSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR  104 (356)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHCCCCC---CceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc
Confidence            45677999999999999999999999874   23455444321    1122456666665  4566788888732221  


Q ss_pred             CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882          113 NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS  182 (454)
Q Consensus       113 ~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~  182 (454)
                      .....  ...+++++..+++..      ........+++++       |||+.+|+||+||||+ +||+..+..+.+.|.
T Consensus       105 ~~~~~~~~~~~~~~l~~~gL~~------~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~  178 (356)
T PRK11650        105 GMPKAEIEERVAEAARILELEP------LLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQ  178 (356)
T ss_pred             CCCHHHHHHHHHHHHHHcCChh------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            11111  134455666656532      1233345666665       7999999999999999 899999999999999


Q ss_pred             HHHhC-Cc-EEEEecCC
Q 012882          183 RLLST-GT-VLVATSNR  197 (454)
Q Consensus       183 ~L~~~-G~-vlV~ThN~  197 (454)
                      .+.++ |. +|++||+.
T Consensus       179 ~l~~~~g~tii~vTHd~  195 (356)
T PRK11650        179 RLHRRLKTTSLYVTHDQ  195 (356)
T ss_pred             HHHHhcCCEEEEEeCCH
Confidence            99765 77 99999985

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.67  E-value=2.6e-16  Score=148.02  Aligned_cols=150  Identities=17%  Similarity=0.137  Sum_probs=98.3

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-----HHHHHHHHHHHhhh--hhcccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-----MLKINEHMHRLWKN--QVAEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-----~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~  112 (454)
                      ..+++-++|+|+||||||||+++|+|..++ ..  +.+.+.+.     .....+.+.++.+.  .....|+.+++.....
T Consensus        24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~--G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~  100 (200)
T PRK13540         24 LPAGGLLHLKGSNGAGKTTLLKLIAGLLNP-EK--GEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIH  100 (200)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CC--eeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHh
Confidence            356788999999999999999999999864 23  34544321     12233445555544  2245677777632211


Q ss_pred             CCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHH
Q 012882          113 NLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRL  184 (454)
Q Consensus       113 ~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L  184 (454)
                      . .......++++..+++...      .......+++++       +|++.+|++|+||||+ ++|+.++..+.++|.++
T Consensus       101 ~-~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~  173 (200)
T PRK13540        101 F-SPGAVGITELCRLFSLEHL------IDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEH  173 (200)
T ss_pred             c-CcchHHHHHHHHHcCCchh------hhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence            1 1112344555555544221      111223344443       6888999999999999 89999999999999998


Q ss_pred             HhCCc-EEEEecCCCc
Q 012882          185 LSTGT-VLVATSNRAP  199 (454)
Q Consensus       185 ~~~G~-vlV~ThN~~P  199 (454)
                      .+.|. +|++||+...
T Consensus       174 ~~~~~tiii~sh~~~~  189 (200)
T PRK13540        174 RAKGGAVLLTSHQDLP  189 (200)
T ss_pred             HHcCCEEEEEeCCchh
Confidence            77776 8889998643

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.67  E-value=2.1e-16  Score=149.50  Aligned_cols=149  Identities=18%  Similarity=0.164  Sum_probs=98.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---HHHHHHHHHHhhh--hhcccchhhhhhccccCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---LKINEHMHRLWKN--QVAEKSLRSSISGWITNL  114 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~  114 (454)
                      ..+++-++|+|+||||||||+++++|..++ ..  +.+.+++..   ...+..++++.+.  .....|+.+++.......
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~--G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~  101 (207)
T PRK13539         25 LAAGEALVLTGPNGSGKTTLLRLIAGLLPP-AA--GTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFL  101 (207)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CC--ceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc
Confidence            356788999999999999999999998864 23  344443321   1133445555433  223467777663211111


Q ss_pred             CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh
Q 012882          115 PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS  186 (454)
Q Consensus       115 ~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~  186 (454)
                      ......+++++..+++....      ......+++++       ++++.+|++|+||||+ ++|+.....+.++|.++.+
T Consensus       102 ~~~~~~~~~~l~~~~l~~~~------~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~  175 (207)
T PRK13539        102 GGEELDIAAALEAVGLAPLA------HLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLA  175 (207)
T ss_pred             CCcHHHHHHHHHHcCCHHHH------cCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence            11233455666666664311      11123344443       6888999999999999 8999999999999999887


Q ss_pred             CCc-EEEEecCC
Q 012882          187 TGT-VLVATSNR  197 (454)
Q Consensus       187 ~G~-vlV~ThN~  197 (454)
                      +|. +|++||+.
T Consensus       176 ~~~tiii~sH~~  187 (207)
T PRK13539        176 QGGIVIAATHIP  187 (207)
T ss_pred             CCCEEEEEeCCc
Confidence            777 88899985

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.67  E-value=2.2e-16  Score=148.65  Aligned_cols=150  Identities=17%  Similarity=0.147  Sum_probs=99.2

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---HHHHHHHHHHHhhh--hhcccchhhhhhccccCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---MLKINEHMHRLWKN--QVAEKSLRSSISGWITNL  114 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~  114 (454)
                      ..+++-++|+|+||+|||||+++|+|..++ ..+...+..+..   .....+.+.++.+.  .....|+.+++.....  
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~--   99 (201)
T cd03231          23 LAAGEALQVTGPNGSGKTTLLRILAGLSPP-LAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHA--   99 (201)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcc--
Confidence            346788999999999999999999999874 233333222211   12233445555543  2234677777632211  


Q ss_pred             CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh
Q 012882          115 PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS  186 (454)
Q Consensus       115 ~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~  186 (454)
                      .......++++..+++....      ......+++++       ++++.+|++|+||||+ ++|+.....+.++|.++.+
T Consensus       100 ~~~~~~~~~~l~~~~l~~~~------~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~  173 (201)
T cd03231         100 DHSDEQVEEALARVGLNGFE------DRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCA  173 (201)
T ss_pred             cccHHHHHHHHHHcCChhhh------cCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence            11334556666666664321      11233444443       6888999999999999 8999999999999999877


Q ss_pred             CCc-EEEEecCCC
Q 012882          187 TGT-VLVATSNRA  198 (454)
Q Consensus       187 ~G~-vlV~ThN~~  198 (454)
                      +|. +|++||+..
T Consensus       174 ~g~tiii~sH~~~  186 (201)
T cd03231         174 RGGMVVLTTHQDL  186 (201)
T ss_pred             CCCEEEEEecCch
Confidence            776 888888754

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.67  E-value=4.9e-17  Score=165.14  Aligned_cols=151  Identities=14%  Similarity=0.151  Sum_probs=100.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-------HHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-------LKINEHMHRLWKN--QVAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-------~~~~~~i~~~~~~--~~~~~t~~e~l~~~  110 (454)
                      ..+++-++|+|+||||||||+++|+|..++. .|...+......       ...++.++++.|.  .....|+.+++...
T Consensus        28 i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~-~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~  106 (343)
T TIGR02314        28 VPAGQIYGVIGASGAGKSTLIRCVNLLERPT-SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALP  106 (343)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHH
Confidence            3467789999999999999999999998742 343333322211       1223456666655  34456777776322


Q ss_pred             cc--CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          111 IT--NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       111 ~~--~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                      ..  .....  ...+.+++..+++...      .......+++++       |||+.+|++|++|||+ +||+.++..+.
T Consensus       107 ~~~~~~~~~~~~~~v~e~l~~vgL~~~------~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~  180 (343)
T TIGR02314       107 LELDNTPKDEIKRKVTELLALVGLGDK------HDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSIL  180 (343)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCCchh------hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHH
Confidence            11  11111  1234455555555321      222344566665       7999999999999999 89999999999


Q ss_pred             HHHHHHHhC-Cc-EEEEecCC
Q 012882          179 GIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       179 ~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      ++|..+.++ |. +|++||+.
T Consensus       181 ~lL~~l~~~~g~tiiliTH~~  201 (343)
T TIGR02314       181 ELLKEINRRLGLTILLITHEM  201 (343)
T ss_pred             HHHHHHHHhcCCEEEEEeCCH
Confidence            999999875 77 99999985

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.67  E-value=1.8e-16  Score=152.57  Aligned_cols=149  Identities=13%  Similarity=0.120  Sum_probs=97.7

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------H---HH-HHHHHHHhhh--hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------L---KI-NEHMHRLWKN--QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~---~~-~~~i~~~~~~--~~~~~t~~e~l  107 (454)
                      ..++.-++|+||||||||||+++|+|.+++ .  .+.+.+++.-      .   .. ++.+.++.|.  ..+.+|+.+++
T Consensus        32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~--~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l  108 (233)
T PRK11629         32 IGEGEMMAIVGSSGSGKSTLLHLLGGLDTP-T--SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENV  108 (233)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCCCC-C--ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHH
Confidence            346778999999999999999999999864 2  3445444311      0   11 1335555555  33446777776


Q ss_pred             hccc--cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          108 SGWI--TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       108 ~~~~--~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      ....  ......  ...+++++..+++..      ........+++++       +|++.+|+||+||||+ ++|+..+.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~------~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~  182 (233)
T PRK11629        109 AMPLLIGKKKPAEINSRALEMLAAVGLEH------RANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNAD  182 (233)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHcCCch------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence            2211  111111  123445555555532      1122334455554       6888999999999999 89999999


Q ss_pred             HHHHHHHHHHh-CCc-EEEEecCC
Q 012882          176 ALSGIVSRLLS-TGT-VLVATSNR  197 (454)
Q Consensus       176 ~L~~ll~~L~~-~G~-vlV~ThN~  197 (454)
                      .+.++|.++.+ .|. ||++||+.
T Consensus       183 ~l~~~l~~~~~~~g~tvii~sH~~  206 (233)
T PRK11629        183 SIFQLLGELNRLQGTAFLVVTHDL  206 (233)
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCCH
Confidence            99999999975 476 89999974

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.67  E-value=8.8e-17  Score=155.31  Aligned_cols=149  Identities=13%  Similarity=0.074  Sum_probs=98.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--------HHHHHHHHHHHhhh--hhcccchhhhhhc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--------MLKINEHMHRLWKN--QVAEKSLRSSISG  109 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--------~~~~~~~i~~~~~~--~~~~~t~~e~l~~  109 (454)
                      ..+++-++|+|+||||||||+++|+|.+++ ..  +.+.+++.        ....++.+.++.+.  .....|+.+++..
T Consensus        24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~--G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~  100 (240)
T PRK09493         24 IDQGEVVVIIGPSGSGKSTLLRCINKLEEI-TS--GDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMF  100 (240)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCC-Cc--eEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHh
Confidence            346788999999999999999999999864 23  34444331        12234456666655  3345677777632


Q ss_pred             ccc---CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882          110 WIT---NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA  176 (454)
Q Consensus       110 ~~~---~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~  176 (454)
                      ...   .....  ...+.+++..+++...      .......+++++       +|++.+|+||+||||+ ++|+..+..
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~------~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~  174 (240)
T PRK09493        101 GPLRVRGASKEEAEKQARELLAKVGLAER------AHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHE  174 (240)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHcCChHH------HhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence            111   11111  1233445555555321      112223444443       6888999999999999 899999999


Q ss_pred             HHHHHHHHHhCCc-EEEEecCC
Q 012882          177 LSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       177 L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      +.++|.++.++|. +|++||+.
T Consensus       175 l~~~l~~~~~~~~tiii~sH~~  196 (240)
T PRK09493        175 VLKVMQDLAEEGMTMVIVTHEI  196 (240)
T ss_pred             HHHHHHHHHHcCCEEEEEeCCH
Confidence            9999999987776 89999985

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.67  E-value=3.9e-17  Score=163.68  Aligned_cols=174  Identities=17%  Similarity=0.183  Sum_probs=115.8

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-H---HHHHHHHHHHhhh--hhcccchhhhhhccccC-
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-M---LKINEHMHRLWKN--QVAEKSLRSSISGWITN-  113 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-~---~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~-  113 (454)
                      ..+.-+.|+|||||||||||++|+|...+   ..+++.+.+- +   .-..+.++.+.|.  +++.+|+.+|+...+.. 
T Consensus        27 ~~Gef~vllGPSGcGKSTlLr~IAGLe~~---~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~  103 (338)
T COG3839          27 EDGEFVVLLGPSGCGKSTLLRMIAGLEEP---TSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR  103 (338)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC
Confidence            45667999999999999999999998864   2344444321 1   1223456666665  67777888877333222 


Q ss_pred             -CCCCh--HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882          114 -LPFDS--KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS  182 (454)
Q Consensus       114 -~~~~~--~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~  182 (454)
                       .+...  .+++++++.+++.+      .+.+...++++++       |||+++|++++||||. .||...+..+...|.
T Consensus       104 ~~~k~ei~~rV~eva~~L~l~~------lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~  177 (338)
T COG3839         104 GVPKAEIDKRVKEVAKLLGLEH------LLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIK  177 (338)
T ss_pred             CCchHHHHHHHHHHHHHcCChh------HHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHH
Confidence             22222  44455555555532      3344455666665       7999999999999999 799999999999999


Q ss_pred             HHHhC-Cc-EEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCchh
Q 012882          183 RLLST-GT-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVD  233 (454)
Q Consensus       183 ~L~~~-G~-vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~D  233 (454)
                      .+.++ |. +|++|||...+....+++         . +...+++..++++.+
T Consensus       178 ~lh~~l~~T~IYVTHDq~EAmtladri---------~-Vm~~G~i~Q~g~p~e  220 (338)
T COG3839         178 KLHERLGTTTIYVTHDQVEAMTLADRI---------V-VMNDGRIQQVGTPLE  220 (338)
T ss_pred             HHHHhcCCcEEEEcCCHHHHHhhCCEE---------E-EEeCCeeeecCChHH
Confidence            99875 66 999999965444444432         1 223556666665543

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.67  E-value=7.3e-17  Score=155.73  Aligned_cols=150  Identities=17%  Similarity=0.172  Sum_probs=93.6

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-----HHHHHHHHHHh-hh--hhcccchhhhhhcc
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-----LKINEHMHRLW-KN--QVAEKSLRSSISGW  110 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-----~~~~~~i~~~~-~~--~~~~~t~~e~l~~~  110 (454)
                      ...+++-++|+|+||||||||+++|+|.+++ ..|  .+.+.+..     ......+.++. +.  .....|+.+++...
T Consensus        43 ~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p-~~G--~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~  119 (236)
T cd03267          43 TIEKGEIVGFIGPNGAGKTTTLKILSGLLQP-TSG--EVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLL  119 (236)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-Cce--EEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHH
Confidence            3456788999999999999999999998864 233  44333211     12233444443 22  23445666665211


Q ss_pred             --ccCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          111 --ITNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       111 --~~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                        .......  ...++.++..+++...      .......+++++       ++|+.+|++|+||||+ ++|+..+..+.
T Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~gl~~~------~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~  193 (236)
T cd03267         120 AAIYDLPPARFKKRLDELSELLDLEEL------LDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIR  193 (236)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCChhH------hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH
Confidence              1111111  1223334444444221      112234455554       6888999999999999 89999999999


Q ss_pred             HHHHHHHhC-Cc-EEEEecCC
Q 012882          179 GIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       179 ~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      ++|.++.++ |. +|++||+.
T Consensus       194 ~~l~~~~~~~~~tiiivsH~~  214 (236)
T cd03267         194 NFLKEYNRERGTTVLLTSHYM  214 (236)
T ss_pred             HHHHHHHhcCCCEEEEEecCH
Confidence            999999764 55 88999984

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.67  E-value=4.5e-17  Score=166.19  Aligned_cols=148  Identities=14%  Similarity=0.107  Sum_probs=101.6

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--H--HHHHHHHHHHhhh--hhcccchhhhhhccccC-
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--M--LKINEHMHRLWKN--QVAEKSLRSSISGWITN-  113 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--~--~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~-  113 (454)
                      ..+.-+.|+|||||||||||++|+|..++. .|  .+.+++.  .  ....+.++++.|.  .++.+|+.+|+...... 
T Consensus        28 ~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~-~G--~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~  104 (353)
T TIGR03265        28 KKGEFVCLLGPSGCGKTTLLRIIAGLERQT-AG--TIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR  104 (353)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCCCC-ce--EEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc
Confidence            457789999999999999999999998742 33  4444321  1  1123446666665  45667888887322211 


Q ss_pred             -CCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882          114 -LPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS  182 (454)
Q Consensus       114 -~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~  182 (454)
                       ....  ...+++++..+++..      ........+++++       |||+.+|++|+||||+ ++|...+..+.+.|.
T Consensus       105 ~~~~~~~~~~~~~~l~~l~L~~------~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~  178 (353)
T TIGR03265       105 GMGRAEVAERVAELLDLVGLPG------SERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIR  178 (353)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCc------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence             1111  134455566555532      2233445566665       7899999999999999 899999999999999


Q ss_pred             HHHhC-Cc-EEEEecCC
Q 012882          183 RLLST-GT-VLVATSNR  197 (454)
Q Consensus       183 ~L~~~-G~-vlV~ThN~  197 (454)
                      ++.++ |. +|++||+.
T Consensus       179 ~l~~~~~~tvi~vTHd~  195 (353)
T TIGR03265       179 QLQRRLGVTTIMVTHDQ  195 (353)
T ss_pred             HHHHhcCCEEEEEcCCH
Confidence            99765 76 99999985

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.67  E-value=1.6e-16  Score=151.43  Aligned_cols=149  Identities=15%  Similarity=0.124  Sum_probs=95.0

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--H----HH-HHHHHHHHhhh--hhcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--M----LK-INEHMHRLWKN--QVAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--~----~~-~~~~i~~~~~~--~~~~~t~~e~l~~~  110 (454)
                      ..+++-++|+||||||||||+++|+|..++. .|  .+.+++.  .    .. ....+.++.+.  ....+|+.+++...
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G--~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~   99 (222)
T cd03224          23 VPEGEIVALLGRNGAGKTTLLKTIMGLLPPR-SG--SIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLG   99 (222)
T ss_pred             EcCCeEEEEECCCCCCHHHHHHHHhCCCCCC-Cc--eEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHH
Confidence            3467889999999999999999999998742 33  4444321  1    11 12335566555  34456777776221


Q ss_pred             ccCCCC--ChHHHHHHHHHH-hhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          111 ITNLPF--DSKVMEWVAAEE-KYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       111 ~~~~~~--~~~~~e~ll~~~-~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                      ......  .....+.++..+ .+..      ........+++++       +||+.+|++|+||||+ ++|+..+..+.+
T Consensus       100 ~~~~~~~~~~~~~~~~l~~~~~l~~------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~  173 (222)
T cd03224         100 AYARRRAKRKARLERVYELFPRLKE------RRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFE  173 (222)
T ss_pred             hhhcCchhHHHHHHHHHHHHHhhhh------hhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHH
Confidence            111111  112223333333 1211      1122233455544       6888999999999999 899999999999


Q ss_pred             HHHHHHhCCc-EEEEecCC
Q 012882          180 IVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       180 ll~~L~~~G~-vlV~ThN~  197 (454)
                      +|.++.++|. +|++||+.
T Consensus       174 ~l~~~~~~~~tiii~sH~~  192 (222)
T cd03224         174 AIRELRDEGVTILLVEQNA  192 (222)
T ss_pred             HHHHHHHCCCEEEEEeCCH
Confidence            9999987776 88888873

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.66  E-value=1e-16  Score=155.93  Aligned_cols=150  Identities=14%  Similarity=0.160  Sum_probs=102.2

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-HHHH------HHHHHHHhhh--hhcccchhhhhhc
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-MLKI------NEHMHRLWKN--QVAEKSLRSSISG  109 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-~~~~------~~~i~~~~~~--~~~~~t~~e~l~~  109 (454)
                      ..+.++-+.|+||||||||||+++|+|...|   ..++|.|++- +.+.      .++++.+.|+  +.+.+|+.+|+..
T Consensus        24 ~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p---~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAF  100 (345)
T COG1118          24 DIKSGELVALLGPSGAGKSTLLRIIAGLETP---DAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAF  100 (345)
T ss_pred             eecCCcEEEEECCCCCcHHHHHHHHhCcCCC---CCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhh
Confidence            3456788999999999999999999998864   3456666553 1111      2345555554  5667777777732


Q ss_pred             cccCC---C---CChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          110 WITNL---P---FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       110 ~~~~~---~---~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      .+...   +   ....++++++...++.+..      ......+++++       |||+.+|++|+||||. .||..-+.
T Consensus       101 Gl~~~~~~p~~~~~r~rv~elL~lvqL~~la------~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~  174 (345)
T COG1118         101 GLKVRKERPSEAEIRARVEELLRLVQLEGLA------DRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRK  174 (345)
T ss_pred             cccccccCCChhhHHHHHHHHHHHhcccchh------hcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHH
Confidence            22111   1   1124555555555553211      11223344444       6888999999999999 69999999


Q ss_pred             HHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          176 ALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       176 ~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      .|.+-|+++.++ |+ ++++|||.
T Consensus       175 ~lr~wLr~~~~~~~~ttvfVTHD~  198 (345)
T COG1118         175 ELRRWLRKLHDRLGVTTVFVTHDQ  198 (345)
T ss_pred             HHHHHHHHHHHhhCceEEEEeCCH
Confidence            999999999876 77 99999995

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.66  E-value=3.3e-16  Score=146.74  Aligned_cols=149  Identities=13%  Similarity=0.104  Sum_probs=93.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH--HHHHHHHHHHhhh--hhcccchhhhhhccccCCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM--LKINEHMHRLWKN--QVAEKSLRSSISGWITNLP  115 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~--~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~~  115 (454)
                      ..++.-++|+|+||||||||+++|+|..++ ..|  .+.+.+..  ......+.++.+.  .....|+.+++...... .
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G--~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~-~   98 (195)
T PRK13541         23 FLPSAITYIKGANGCGKSSLLRMIAGIMQP-SSG--NIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEI-Y   98 (195)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCc--EEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHh-c
Confidence            346788999999999999999999998874 233  44443321  1111223344433  22345666665221110 0


Q ss_pred             CChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC
Q 012882          116 FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST  187 (454)
Q Consensus       116 ~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~  187 (454)
                      ......+.++..+++..      ........+++++       +|++.+|++|+||||+ ++|+..+..+.+++..+.+.
T Consensus        99 ~~~~~~~~~l~~~~l~~------~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~  172 (195)
T PRK13541         99 NSAETLYAAIHYFKLHD------LLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANS  172 (195)
T ss_pred             ccHHHHHHHHHHcCCHh------hhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence            11233444444444422      1122234445444       6889999999999999 89999999999999877667


Q ss_pred             Cc-EEEEecCCC
Q 012882          188 GT-VLVATSNRA  198 (454)
Q Consensus       188 G~-vlV~ThN~~  198 (454)
                      |. +|++||+..
T Consensus       173 ~~tiii~sh~~~  184 (195)
T PRK13541        173 GGIVLLSSHLES  184 (195)
T ss_pred             CCEEEEEeCCcc
Confidence            76 888888864

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.66  E-value=1.9e-16  Score=158.58  Aligned_cols=151  Identities=15%  Similarity=0.156  Sum_probs=99.5

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----------------------------HHHHHHHHHH
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----------------------------MLKINEHMHR   92 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----------------------------~~~~~~~i~~   92 (454)
                      ..+.-++|+|+||||||||+++|+|.+++ ..+...+.+...                            .....+.+++
T Consensus        31 ~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~  109 (305)
T PRK13651         31 NQGEFIAIIGQTGSGKTTFIEHLNALLLP-DTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGV  109 (305)
T ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCCCC-CCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEE
Confidence            46778999999999999999999999875 345444432211                            1233445666


Q ss_pred             Hhhh---hhcccchhhhhhccccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCC
Q 012882           93 LWKN---QVAEKSLRSSISGWITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGA  158 (454)
Q Consensus        93 ~~~~---~~~~~t~~e~l~~~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p  158 (454)
                      +.|.   .....|+.+++...........    ..++.++..+++..     .........+++++       ++|+.+|
T Consensus       110 v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----~~~~~~~~~LSgGqkqrvalA~aL~~~P  184 (305)
T PRK13651        110 VFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE-----SYLQRSPFELSGGQKRRVALAGILAMEP  184 (305)
T ss_pred             EeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh-----hhhhCChhhCCHHHHHHHHHHHHHHhCC
Confidence            6653   1223477776632221111111    33455555555531     11122233445444       6888999


Q ss_pred             cEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          159 SILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       159 ~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      +||+||||+ ++|+..+..+.++|..+.+.|. ||++||+.
T Consensus       185 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~  225 (305)
T PRK13651        185 DFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDL  225 (305)
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCH
Confidence            999999999 8999999999999999987777 99999985

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.66  E-value=3e-16  Score=149.52  Aligned_cols=149  Identities=12%  Similarity=0.106  Sum_probs=96.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--H----HH---HH-HHHHHHhhh--hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--M----LK---IN-EHMHRLWKN--QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--~----~~---~~-~~i~~~~~~--~~~~~t~~e~l  107 (454)
                      ..+++-++|+||||||||||+++|+|..++ ..|  .+.+++.  .    ..   .. ..++++.|.  .....|+.+++
T Consensus        28 i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~-~~G--~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l  104 (221)
T TIGR02211        28 IGKGEIVAIVGSSGSGKSTLLHLLGGLDNP-TSG--EVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENV  104 (221)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCc--EEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHH
Confidence            356788999999999999999999999874 233  4444321  1    01   11 345555555  33446777776


Q ss_pred             hccc--cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          108 SGWI--TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       108 ~~~~--~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      ....  ......  ...+.+++..+++..      ........+++++       ++|+.+|++|+||||+ ++|+.++.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~  178 (221)
T TIGR02211       105 AMPLLIGKKSVKEAKERAYEMLEKVGLEH------RINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAK  178 (221)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHcCChh------hhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHH
Confidence            2211  111111  123344555555432      1222334455554       6889999999999999 89999999


Q ss_pred             HHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          176 ALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       176 ~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      .+.++|..+.++ |. +|++||+.
T Consensus       179 ~l~~~l~~~~~~~~~tii~~tH~~  202 (221)
T TIGR02211       179 IIFDLMLELNRELNTSFLVVTHDL  202 (221)
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCH
Confidence            999999999753 66 88999874

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.66  E-value=1.9e-16  Score=156.29  Aligned_cols=149  Identities=17%  Similarity=0.157  Sum_probs=99.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh---hcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ---VAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~---~~~~t~~e~l~~~  110 (454)
                      ..+++-++|+|+||||||||+++|+|.+++. .|  .+.+++.      .......++++.|..   ....|+.+++...
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G--~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~  104 (274)
T PRK13647         28 IPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ-RG--RVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFG  104 (274)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-ce--EEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhh
Confidence            3567889999999999999999999998742 33  4443321      123344566666642   2345777776322


Q ss_pred             ccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          111 ITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       111 ~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                      ......+.    ..++.++..+++...      .......+++++       +||+.+|++||||||+ ++|+.++..+.
T Consensus       105 ~~~~~~~~~~~~~~~~~~l~~~~L~~~------~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~  178 (274)
T PRK13647        105 PVNMGLDKDEVERRVEEALKAVRMWDF------RDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLM  178 (274)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHCCCHHH------hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHH
Confidence            11111111    234455555555321      122234455554       6889999999999999 89999999999


Q ss_pred             HHHHHHHhCCc-EEEEecCC
Q 012882          179 GIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       179 ~ll~~L~~~G~-vlV~ThN~  197 (454)
                      ++|.++.++|. +|++||+.
T Consensus       179 ~~l~~~~~~g~tili~tH~~  198 (274)
T PRK13647        179 EILDRLHNQGKTVIVATHDV  198 (274)
T ss_pred             HHHHHHHHCCCEEEEEeCCH
Confidence            99999987776 89999985

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.66  E-value=1.7e-16  Score=150.37  Aligned_cols=146  Identities=17%  Similarity=0.124  Sum_probs=95.2

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-----HHHHHHHHHHhhh--hhcccchhhhhhcc--cc
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-----LKINEHMHRLWKN--QVAEKSLRSSISGW--IT  112 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-----~~~~~~i~~~~~~--~~~~~t~~e~l~~~--~~  112 (454)
                      ++ -++|+||||||||||+++|+|.+++ ..  +.+.+++..     ......+.++.++  .....|+.+++...  ..
T Consensus        25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~~~-~~--G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~  100 (211)
T cd03264          25 PG-MYGLLGPNGAGKTTLMRILATLTPP-SS--GTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK  100 (211)
T ss_pred             CC-cEEEECCCCCCHHHHHHHHhCCCCC-Cc--cEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHh
Confidence            45 7889999999999999999999874 23  345444321     1223445555554  23445777766221  11


Q ss_pred             CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882          113 NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS  182 (454)
Q Consensus       113 ~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~  182 (454)
                      .....  ...++.++..+++...      .......+++++       +||+.+|++|+||||+ ++|+.++..+.++|.
T Consensus       101 ~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~  174 (211)
T cd03264         101 GIPSKEVKARVDEVLELVNLGDR------AKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLS  174 (211)
T ss_pred             CCCHHHHHHHHHHHHHHCCCHHH------HhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence            11111  1233445555554321      122334555554       6889999999999999 899999999999999


Q ss_pred             HHHhCCcEEEEecCC
Q 012882          183 RLLSTGTVLVATSNR  197 (454)
Q Consensus       183 ~L~~~G~vlV~ThN~  197 (454)
                      ++.+..++|++||+.
T Consensus       175 ~~~~~~tii~vsH~~  189 (211)
T cd03264         175 ELGEDRIVILSTHIV  189 (211)
T ss_pred             HHhCCCEEEEEcCCH
Confidence            997654489999984

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.66  E-value=6.5e-17  Score=165.12  Aligned_cols=146  Identities=16%  Similarity=0.188  Sum_probs=98.4

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----------HHHHHHHHHHHhhh--hhcccchhhhhh
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----------MLKINEHMHRLWKN--QVAEKSLRSSIS  108 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----------~~~~~~~i~~~~~~--~~~~~t~~e~l~  108 (454)
                      ..+.-++|+||||||||||+++|+|..++. .|  .+.+++.          ....++.+.++.|.  ..+.+|+.+++.
T Consensus        22 ~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~-~G--~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~   98 (352)
T PRK11144         22 PAQGITAIFGRSGAGKTSLINAISGLTRPQ-KG--RIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLR   98 (352)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ce--EEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHH
Confidence            456789999999999999999999998642 33  4443321          11123345555554  345567777763


Q ss_pred             ccccCCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882          109 GWITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI  180 (454)
Q Consensus       109 ~~~~~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l  180 (454)
                      ....  ......+++++..+++..      ........+++++       +||+.+|++|+||||+ ++|+..+..+.++
T Consensus        99 ~~~~--~~~~~~~~~~l~~~gl~~------~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~  170 (352)
T PRK11144         99 YGMA--KSMVAQFDKIVALLGIEP------LLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPY  170 (352)
T ss_pred             hhhh--hhhHHHHHHHHHHcCCch------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence            2111  112244555666655532      1222334455554       6889999999999999 8999999999999


Q ss_pred             HHHHHhC-Cc-EEEEecCC
Q 012882          181 VSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       181 l~~L~~~-G~-vlV~ThN~  197 (454)
                      |.++.++ |. +|++||+.
T Consensus       171 L~~l~~~~g~tii~vTHd~  189 (352)
T PRK11144        171 LERLAREINIPILYVSHSL  189 (352)
T ss_pred             HHHHHHhcCCeEEEEecCH
Confidence            9999865 66 99999985

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.66  E-value=1.9e-16  Score=154.00  Aligned_cols=142  Identities=15%  Similarity=0.128  Sum_probs=92.8

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhh--hcccchhhhhhccccCCCCCh
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQ--VAEKSLRSSISGWITNLPFDS  118 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~--~~~~t~~e~l~~~~~~~~~~~  118 (454)
                      ..++-++|+||||||||||+++|+|.+++. .+  .+.+...      .+.++.+..  ....|+.+++...........
T Consensus        23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~-~G--~i~~~g~------~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~   93 (246)
T cd03237          23 SESEVIGILGPNGIGKTTFIKMLAGVLKPD-EG--DIEIELD------TVSYKPQYIKADYEGTVRDLLSSITKDFYTHP   93 (246)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcCC-CC--eEEECCc------eEEEecccccCCCCCCHHHHHHHHhhhccccH
Confidence            456779999999999999999999998742 33  4444321      234444432  234566666522111111111


Q ss_pred             HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC-Cc
Q 012882          119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST-GT  189 (454)
Q Consensus       119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~-G~  189 (454)
                      ...++++..+++...      .......+++++       +||+.+|++|+||||+ +||+..+..+.++|.++.++ |.
T Consensus        94 ~~~~~~l~~l~l~~~------~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~  167 (246)
T cd03237          94 YFKTEIAKPLQIEQI------LDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEK  167 (246)
T ss_pred             HHHHHHHHHcCCHHH------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence            233455555555321      122234455554       6889999999999999 89999999999999999764 66


Q ss_pred             -EEEEecCC
Q 012882          190 -VLVATSNR  197 (454)
Q Consensus       190 -vlV~ThN~  197 (454)
                       +|++||+.
T Consensus       168 tiiivsHd~  176 (246)
T cd03237         168 TAFVVEHDI  176 (246)
T ss_pred             EEEEEeCCH
Confidence             99999984

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.66  E-value=1.9e-16  Score=149.92  Aligned_cols=153  Identities=14%  Similarity=0.133  Sum_probs=99.2

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH-----HHHHHHHHHhhh----hhcccchhhhhhc
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML-----KINEHMHRLWKN----QVAEKSLRSSISG  109 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~-----~~~~~i~~~~~~----~~~~~t~~e~l~~  109 (454)
                      ....+..++|+|++|||||||.++++|...+ ..|...++......     ...+.+..+.|.    ..+..|+.+.+.-
T Consensus        29 ~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p-~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~E  107 (252)
T COG1124          29 EIERGETLGIVGESGSGKSTLARLLAGLEKP-SSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSE  107 (252)
T ss_pred             EecCCCEEEEEcCCCCCHHHHHHHHhcccCC-CCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhh
Confidence            3456788999999999999999999998875 24444443321111     112233334443    2333445444422


Q ss_pred             cccC--CCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          110 WITN--LPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       110 ~~~~--~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                      .+..  .......+.+++...++..     ..+.+...++++++       |||..+|++|++|||+ .||+..+..+++
T Consensus       108 pl~~~~~~~~~~~i~~~L~~VgL~~-----~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~Iln  182 (252)
T COG1124         108 PLRPHGLSKSQQRIAELLDQVGLPP-----SFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILN  182 (252)
T ss_pred             hhccCCccHHHHHHHHHHHHcCCCH-----HHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHH
Confidence            2222  2222234455555555532     12233344566665       7999999999999999 899999999999


Q ss_pred             HHHHHHhC-Cc-EEEEecCC
Q 012882          180 IVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       180 ll~~L~~~-G~-vlV~ThN~  197 (454)
                      +|.++.++ |. .|++|||.
T Consensus       183 lL~~l~~~~~lt~l~IsHdl  202 (252)
T COG1124         183 LLLELKKERGLTYLFISHDL  202 (252)
T ss_pred             HHHHHHHhcCceEEEEeCcH
Confidence            99999875 55 99999994

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.66  E-value=1.2e-16  Score=151.56  Aligned_cols=149  Identities=18%  Similarity=0.182  Sum_probs=95.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH----HHHHHHHHHhhh--hhcccchhhhhhccccC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML----KINEHMHRLWKN--QVAEKSLRSSISGWITN  113 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~----~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~  113 (454)
                      ..++.-++|+|+||||||||+++|+|.+++ ..  +.+.+.+...    .....+.++.+.  .....|+.+++......
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~--G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~   99 (213)
T cd03301          23 IADGEFVVLLGPSGCGKTTTLRMIAGLEEP-TS--GRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKL   99 (213)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCC-Cc--eEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHh
Confidence            346788999999999999999999999864 23  3444432110    011234555544  23345777766321111


Q ss_pred             CCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882          114 LPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV  181 (454)
Q Consensus       114 ~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll  181 (454)
                      .....    ..+++++..+++..      ........+++++       ++|+.+|++|+||||+ ++|+.++..+.++|
T Consensus       100 ~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  173 (213)
T cd03301         100 RKVPKDEIDERVREVAELLQIEH------LLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAEL  173 (213)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCHH------HHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            11111    23344445444422      1122234455554       6888999999999999 89999999999999


Q ss_pred             HHHHhC-Cc-EEEEecCC
Q 012882          182 SRLLST-GT-VLVATSNR  197 (454)
Q Consensus       182 ~~L~~~-G~-vlV~ThN~  197 (454)
                      .++.++ |. ||++||+.
T Consensus       174 ~~~~~~~~~tvi~~sH~~  191 (213)
T cd03301         174 KRLQQRLGTTTIYVTHDQ  191 (213)
T ss_pred             HHHHHHcCCEEEEEeCCH
Confidence            999764 66 89999974

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.66  E-value=1.4e-16  Score=162.21  Aligned_cols=149  Identities=12%  Similarity=0.139  Sum_probs=98.3

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--H-------HHHHHHHHHHhhh--hhcccchhhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--M-------LKINEHMHRLWKN--QVAEKSLRSSIS  108 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--~-------~~~~~~i~~~~~~--~~~~~t~~e~l~  108 (454)
                      ..++.-++|+||||||||||+++|+|.+++ ..  +.+.+++.  .       ...++.++++.|+  ....+|+.+++.
T Consensus        28 i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p-~~--G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~  104 (343)
T PRK11153         28 IPAGEIFGVIGASGAGKSTLIRCINLLERP-TS--GRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVA  104 (343)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCCCC-Cc--eEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHH
Confidence            346777999999999999999999999874 23  34444321  1       1123445555554  334567777763


Q ss_pred             ccc--cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882          109 GWI--TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA  176 (454)
Q Consensus       109 ~~~--~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~  176 (454)
                      ...  ......  ...+++++..+++...      .......+++++       +||+.+|+||+||||+ +||+.++..
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~------~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~  178 (343)
T PRK11153        105 LPLELAGTPKAEIKARVTELLELVGLSDK------ADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS  178 (343)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCCchh------hhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence            211  111111  1234455555555321      122334556554       6889999999999999 899999999


Q ss_pred             HHHHHHHHHhC-Cc-EEEEecCC
Q 012882          177 LSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       177 L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      +.++|.++.++ |+ +|++||+.
T Consensus       179 l~~~L~~l~~~~g~tiilvtH~~  201 (343)
T PRK11153        179 ILELLKDINRELGLTIVLITHEM  201 (343)
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCH
Confidence            99999999764 76 89999984

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.66  E-value=3e-16  Score=151.84  Aligned_cols=151  Identities=17%  Similarity=0.162  Sum_probs=99.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh--hhcccchhhhhhcc-
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN--QVAEKSLRSSISGW-  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~--~~~~~t~~e~l~~~-  110 (454)
                      ..+++-++|+||||+|||||+++|+|..++ ..  +.+.+++.      ....+..+.++.+.  .....|+.+++... 
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~--G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~  100 (242)
T cd03295          24 IAKGEFLVLIGPSGSGKTTTMKMINRLIEP-TS--GEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVP  100 (242)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CC--ceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHH
Confidence            356788999999999999999999999874 23  34444321      11234455666665  34456777776321 


Q ss_pred             -ccCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          111 -ITNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       111 -~~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                       .......  ...+++++..+++...    .........+++++       +|++.+|++|+||||+ ++|+.++..+.+
T Consensus       101 ~~~~~~~~~~~~~~~~~l~~l~l~~~----~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~  176 (242)
T cd03295         101 KLLKWPKEKIRERADELLALVGLDPA----EFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQE  176 (242)
T ss_pred             HHcCCCHHHHHHHHHHHHHHcCCCcH----HHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHH
Confidence             1111111  1234455555555310    01122334555554       6889999999999999 899999999999


Q ss_pred             HHHHHHhC-Cc-EEEEecCC
Q 012882          180 IVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       180 ll~~L~~~-G~-vlV~ThN~  197 (454)
                      +|.++.++ |. ||++||+.
T Consensus       177 ~L~~~~~~~g~tvii~sH~~  196 (242)
T cd03295         177 EFKRLQQELGKTIVFVTHDI  196 (242)
T ss_pred             HHHHHHHHcCCEEEEEecCH
Confidence            99999764 76 88888874

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.66  E-value=1.8e-16  Score=154.03  Aligned_cols=149  Identities=13%  Similarity=0.111  Sum_probs=96.3

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--------------HHHHHHHHHHHhhh--hhcccch
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--------------MLKINEHMHRLWKN--QVAEKSL  103 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--------------~~~~~~~i~~~~~~--~~~~~t~  103 (454)
                      ..++.-++|+|+||||||||+++|+|.+++ ..|  .+.+++.              ....+..++++.+.  .....|+
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G--~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv  102 (250)
T PRK11264         26 VKPGEVVAIIGPSGSGKTTLLRCINLLEQP-EAG--TIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTV  102 (250)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCe--EEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCH
Confidence            356777999999999999999999998864 233  3433221              11233445555554  2334677


Q ss_pred             hhhhhcccc-CCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCC
Q 012882          104 RSSISGWIT-NLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVD  170 (454)
Q Consensus       104 ~e~l~~~~~-~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD  170 (454)
                      .+++..... ......    ..++.++..+++...      .......+++++       +||+.+|+||+||||+ ++|
T Consensus       103 ~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~------~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD  176 (250)
T PRK11264        103 LENIIEGPVIVKGEPKEEATARARELLAKVGLAGK------ETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALD  176 (250)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch------hhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence            777632111 001111    233444444444221      122234455544       6888999999999999 899


Q ss_pred             HHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          171 VFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       171 ~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      +.++..+.++|..+.++|. +|++||+.
T Consensus       177 ~~~~~~l~~~l~~~~~~~~tvi~~tH~~  204 (250)
T PRK11264        177 PELVGEVLNTIRQLAQEKRTMVIVTHEM  204 (250)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            9999999999999987776 88999984

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.66  E-value=1.9e-16  Score=150.29  Aligned_cols=147  Identities=12%  Similarity=0.108  Sum_probs=94.5

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----------HHHHHHHHHHHhhh--hhcccchhhhhh
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----------MLKINEHMHRLWKN--QVAEKSLRSSIS  108 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----------~~~~~~~i~~~~~~--~~~~~t~~e~l~  108 (454)
                      .+ +-++|+||||||||||+++|+|.+++ ..|  .+.+++.          .....+.+.++.+.  .....|+.+++.
T Consensus        22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~~~-~~G--~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~   97 (214)
T cd03297          22 NE-EVTGIFGASGAGKSTLLRCIAGLEKP-DGG--TIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLA   97 (214)
T ss_pred             cc-eeEEEECCCCCCHHHHHHHHhCCCCC-CCc--eEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHH
Confidence            46 88999999999999999999999874 233  3444321          11123345555554  233456666653


Q ss_pred             ccccCCC--CChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          109 GWITNLP--FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       109 ~~~~~~~--~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                      .......  .....+++++..+++...      .......+++++       ++++.+|++|+||||+ ++|+.++..+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~  171 (214)
T cd03297          98 FGLKRKRNREDRISVDELLDLLGLDHL------LNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLL  171 (214)
T ss_pred             HHHhhCCHHHHHHHHHHHHHHcCCHhH------hhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence            2111110  011234445555554321      112223444443       6888999999999999 89999999999


Q ss_pred             HHHHHHHhC-Cc-EEEEecCC
Q 012882          179 GIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       179 ~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      ++|.++.++ |. +|++||+.
T Consensus       172 ~~l~~~~~~~~~tiii~sH~~  192 (214)
T cd03297         172 PELKQIKKNLNIPVIFVTHDL  192 (214)
T ss_pred             HHHHHHHHHcCcEEEEEecCH
Confidence            999999765 76 89999984

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.66  E-value=3e-16  Score=149.44  Aligned_cols=151  Identities=15%  Similarity=0.113  Sum_probs=96.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---HHHHHHHHHHHhhh--hhcccchhhhhhcc--cc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---MLKINEHMHRLWKN--QVAEKSLRSSISGW--IT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---~~~~~~~i~~~~~~--~~~~~t~~e~l~~~--~~  112 (454)
                      ..++.-++|+||||||||||+++|+|..++ ..|...+.....   .....+.+.++.+.  .....|+.+++...  ..
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~  103 (220)
T cd03263          25 VYKGEIFGLLGHNGAGKTTTLKMLTGELRP-TSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLK  103 (220)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHc
Confidence            346677999999999999999999999864 234333322211   11233445555554  33456777766221  11


Q ss_pred             CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882          113 NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS  182 (454)
Q Consensus       113 ~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~  182 (454)
                      .....  ...+++++..+++...      .......+++++       +|++.+|++|+||||+ ++|+..+..+.++|.
T Consensus       104 ~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~  177 (220)
T cd03263         104 GLPKSEIKEEVELLLRVLGLTDK------ANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLIL  177 (220)
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHH------HhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHH
Confidence            11111  1234455555555321      122234455554       6889999999999999 899999999999999


Q ss_pred             HHHhCCcEEEEecCC
Q 012882          183 RLLSTGTVLVATSNR  197 (454)
Q Consensus       183 ~L~~~G~vlV~ThN~  197 (454)
                      .+.+..++|++||+.
T Consensus       178 ~~~~~~tii~~sH~~  192 (220)
T cd03263         178 EVRKGRSIILTTHSM  192 (220)
T ss_pred             HHhcCCEEEEEcCCH
Confidence            987643488899874

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.66  E-value=2.4e-16  Score=154.16  Aligned_cols=147  Identities=16%  Similarity=0.171  Sum_probs=98.4

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-HHHHHHHHHHHhhh--hhcccchhhhhhccccCCCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-MLKINEHMHRLWKN--QVAEKSLRSSISGWITNLPF  116 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~~~  116 (454)
                      ..++.-++|+||||||||||+++|+|.+++.   .+.+.+++. .....+.+.++.|.  ..+..|+.+++......  .
T Consensus        35 i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~--~  109 (257)
T PRK11247         35 IPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKG--Q  109 (257)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccc--h
Confidence            3467789999999999999999999998742   344544332 12233445555554  23445777776322111  1


Q ss_pred             ChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh-C
Q 012882          117 DSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS-T  187 (454)
Q Consensus       117 ~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~-~  187 (454)
                      ....+.+++..+++...      .......+++++       ++|+.+|++|+||||+ +||+..+..+.++|..+.+ .
T Consensus       110 ~~~~~~~~l~~~gl~~~------~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~  183 (257)
T PRK11247        110 WRDAALQALAAVGLADR------ANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQH  183 (257)
T ss_pred             HHHHHHHHHHHcCChhH------hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            12344555666655321      122234455554       6888999999999999 8999999999999999865 4


Q ss_pred             Cc-EEEEecCC
Q 012882          188 GT-VLVATSNR  197 (454)
Q Consensus       188 G~-vlV~ThN~  197 (454)
                      |. +|++||+.
T Consensus       184 ~~tviivsHd~  194 (257)
T PRK11247        184 GFTVLLVTHDV  194 (257)
T ss_pred             CCEEEEEeCCH
Confidence            65 89999985

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.66  E-value=8.9e-17  Score=165.11  Aligned_cols=149  Identities=14%  Similarity=0.147  Sum_probs=101.0

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhcccc-
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWIT-  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~-  112 (454)
                      ...+.-++|+|||||||||||++|+|..++   ..+.+.+.+..    ......++++.|.  .++.+|+.+|+..... 
T Consensus        37 i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p---~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~  113 (375)
T PRK09452         37 INNGEFLTLLGPSGCGKTTVLRLIAGFETP---DSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRM  113 (375)
T ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhCCCCC---CceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhh
Confidence            345677999999999999999999998874   23445443321    1112345556555  4566788888732221 


Q ss_pred             -CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882          113 -NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV  181 (454)
Q Consensus       113 -~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll  181 (454)
                       .....  ...+++++..+++..      ........+++++       |||+.+|+||+||||+ +||...+..+.+.|
T Consensus       114 ~~~~~~~~~~~~~~~l~~~~l~~------~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L  187 (375)
T PRK09452        114 QKTPAAEITPRVMEALRMVQLEE------FAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNEL  187 (375)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCch------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence             11111  123445555555532      1223344556554       7899999999999999 89999999999999


Q ss_pred             HHHHhC-Cc-EEEEecCC
Q 012882          182 SRLLST-GT-VLVATSNR  197 (454)
Q Consensus       182 ~~L~~~-G~-vlV~ThN~  197 (454)
                      .++.++ |. +|++||+.
T Consensus       188 ~~l~~~~g~tiI~vTHd~  205 (375)
T PRK09452        188 KALQRKLGITFVFVTHDQ  205 (375)
T ss_pred             HHHHHhcCCEEEEEeCCH
Confidence            999864 76 99999985

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.66  E-value=9.3e-17  Score=163.71  Aligned_cols=149  Identities=14%  Similarity=0.121  Sum_probs=101.7

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhcccc-
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWIT-  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~-  112 (454)
                      ...++-++|+||||||||||+++|+|..++. .  +.+.+.+..    ....+.++++.|.  ..+.+|+.+|+..... 
T Consensus        29 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~-~--G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~  105 (351)
T PRK11432         29 IKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT-E--GQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKM  105 (351)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHHCCCCCC-c--eEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhH
Confidence            3467889999999999999999999998742 3  445443321    1122445666665  4566788888733221 


Q ss_pred             -CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882          113 -NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV  181 (454)
Q Consensus       113 -~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll  181 (454)
                       .....  ...+++++..+++...      .......+++++       |||+.+|+||+||||+ +||+..+..+.+.|
T Consensus       106 ~~~~~~~~~~~v~~~l~~~gl~~~------~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l  179 (351)
T PRK11432        106 LGVPKEERKQRVKEALELVDLAGF------EDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKI  179 (351)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchh------hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence             11111  1344555555555321      122344556554       7889999999999999 89999999999999


Q ss_pred             HHHHhC-Cc-EEEEecCC
Q 012882          182 SRLLST-GT-VLVATSNR  197 (454)
Q Consensus       182 ~~L~~~-G~-vlV~ThN~  197 (454)
                      ..+.++ |. +|++||+.
T Consensus       180 ~~l~~~~g~tii~vTHd~  197 (351)
T PRK11432        180 RELQQQFNITSLYVTHDQ  197 (351)
T ss_pred             HHHHHhcCCEEEEEcCCH
Confidence            999765 76 99999985

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.65  E-value=7e-17  Score=165.19  Aligned_cols=151  Identities=15%  Similarity=0.136  Sum_probs=101.3

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhcccc--
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWIT--  112 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~--  112 (454)
                      ..+.-+.|+||||||||||+++|+|..++. ...+.+.+.+..    ....+.++++.|.  ..+.+|+.+++.....  
T Consensus        29 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~-~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~  107 (362)
T TIGR03258        29 EAGELLALIGKSGCGKTTLLRAIAGFVKAA-GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ  107 (362)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc
Confidence            456779999999999999999999988742 300444443211    1112345555555  4566788887732221  


Q ss_pred             CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882          113 NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS  182 (454)
Q Consensus       113 ~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~  182 (454)
                      .....  ...++++++.+++..      ........|++++       |||+.+|+||+||||+ +||+..+..+.+.|.
T Consensus       108 ~~~~~~~~~~v~~~l~~~gL~~------~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~  181 (362)
T TIGR03258       108 KMPKADIAERVADALKLVGLGD------AAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIA  181 (362)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCc------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHH
Confidence            11111  134455555555532      2233344566554       7899999999999999 899999999999999


Q ss_pred             HHHhC--Cc-EEEEecCCC
Q 012882          183 RLLST--GT-VLVATSNRA  198 (454)
Q Consensus       183 ~L~~~--G~-vlV~ThN~~  198 (454)
                      ++.++  |+ +|++||+..
T Consensus       182 ~l~~~~~g~til~vTHd~~  200 (362)
T TIGR03258       182 ALHEELPELTILCVTHDQD  200 (362)
T ss_pred             HHHHhCCCCEEEEEeCCHH
Confidence            99876  66 999999853

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.65  E-value=1.7e-16  Score=153.26  Aligned_cols=149  Identities=14%  Similarity=0.097  Sum_probs=96.9

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhcccc-
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWIT-  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~-  112 (454)
                      ..+++-++|+||||||||||+++|+|..++ ..  +.+.+++..    ....+.+.++.|.  .....|+.+++..... 
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~--G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~  101 (239)
T cd03296          25 IPSGELVALLGPSGSGKTTLLRLIAGLERP-DS--GTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRV  101 (239)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-Cc--eEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhh
Confidence            356788999999999999999999999864 23  344443311    0112345555554  2344677777632111 


Q ss_pred             -CC--CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882          113 -NL--PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL  177 (454)
Q Consensus       113 -~~--~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L  177 (454)
                       ..  ....    ..++.++..+++..      ........+++++       +||+.+|++|+||||+ ++|+..+..+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l  175 (239)
T cd03296         102 KPRSERPPEAEIRAKVHELLKLVQLDW------LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKEL  175 (239)
T ss_pred             ccccccCCHHHHHHHHHHHHHHcCChh------hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence             11  0011    23344555555422      1122234455554       6889999999999999 8999999999


Q ss_pred             HHHHHHHHhC-Cc-EEEEecCC
Q 012882          178 SGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       178 ~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      .++|.++.+. |. ||++||+.
T Consensus       176 ~~~l~~~~~~~~~tvii~sH~~  197 (239)
T cd03296         176 RRWLRRLHDELHVTTVFVTHDQ  197 (239)
T ss_pred             HHHHHHHHHHcCCEEEEEeCCH
Confidence            9999999764 66 89999984

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=3e-16  Score=151.75  Aligned_cols=149  Identities=16%  Similarity=0.168  Sum_probs=98.3

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------------HHHHHHHHHHHhhh--hhcccchhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------------MLKINEHMHRLWKN--QVAEKSLRS  105 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------------~~~~~~~i~~~~~~--~~~~~t~~e  105 (454)
                      ..+++-++|.||||||||||+++|+|..++ ..  +++.+.+.            .....+.+.++++.  .....|+.+
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~--G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e  101 (242)
T PRK11124         25 CPQGETLVLLGPSGAGKSSLLRVLNLLEMP-RS--GTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQ  101 (242)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-Cc--eEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHH
Confidence            346788999999999999999999999864 23  44554332            11234456666655  334467777


Q ss_pred             hhhc-cc--cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHH
Q 012882          106 SISG-WI--TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVF  172 (454)
Q Consensus       106 ~l~~-~~--~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~  172 (454)
                      ++.. ..  ......  ...+..++..+++..      .+......+++++       +|++.+|+||+||||+ ++|+.
T Consensus       102 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~------~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~  175 (242)
T PRK11124        102 NLIEAPCRVLGLSKDQALARAEKLLERLRLKP------YADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPE  175 (242)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHH
Confidence            7632 11  111110  123344444444422      1222334455554       6889999999999999 89999


Q ss_pred             HHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          173 AIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       173 ~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      .+..+.++|.++.++|. +|++||+.
T Consensus       176 ~~~~l~~~l~~~~~~~~tii~~sh~~  201 (242)
T PRK11124        176 ITAQIVSIIRELAETGITQVIVTHEV  201 (242)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            99999999999987777 88999984

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=1.8e-16  Score=157.46  Aligned_cols=150  Identities=15%  Similarity=0.149  Sum_probs=97.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----------HHHHHHHHHHHhhhh---hcccchhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----------MLKINEHMHRLWKNQ---VAEKSLRSS  106 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----------~~~~~~~i~~~~~~~---~~~~t~~e~  106 (454)
                      ..+++-++|+||||+|||||+++|+|.+++ ..|  .+.++..          .......+.++.+..   ....|+.++
T Consensus        30 i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p-~~G--~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~  106 (287)
T PRK13641         30 LEEGSFVALVGHTGSGKSTLMQHFNALLKP-SSG--TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKD  106 (287)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCc--EEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHH
Confidence            356788999999999999999999999875 234  4444321          112333455555541   223577777


Q ss_pred             hhccc--cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882          107 ISGWI--TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI  174 (454)
Q Consensus       107 l~~~~--~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a  174 (454)
                      +....  ......  ...+++++..+++..     .........+++++       +||+.+|++|+||||+ ++|+..+
T Consensus       107 l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~  181 (287)
T PRK13641        107 VEFGPKNFGFSEDEAKEKALKWLKKVGLSE-----DLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGR  181 (287)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCCCh-----hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHH
Confidence            63211  111111  123445555555521     01111233444443       6888999999999999 8999999


Q ss_pred             HHHHHHHHHHHhCCc-EEEEecCC
Q 012882          175 VALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       175 ~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      ..+.++|.++.+.|. ||++||+.
T Consensus       182 ~~l~~~l~~l~~~g~tvlivsH~~  205 (287)
T PRK13641        182 KEMMQLFKDYQKAGHTVILVTHNM  205 (287)
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCCH
Confidence            999999999987776 88999984

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.65  E-value=4.7e-16  Score=149.19  Aligned_cols=150  Identities=15%  Similarity=0.154  Sum_probs=95.0

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-------HHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-------LKINEHMHRLWKN--QVAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-------~~~~~~i~~~~~~--~~~~~t~~e~l~~~  110 (454)
                      ..+++-++|+|+||||||||+++|+|.+++ ..|  .+.+.+..       ......++++.+.  .....|+.+++...
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G--~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~   99 (230)
T TIGR03410        23 VPKGEVTCVLGRNGVGKTTLLKTLMGLLPV-KSG--SIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTG   99 (230)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCC--EEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHH
Confidence            356788999999999999999999999874 233  44443211       1123345666655  33445777766221


Q ss_pred             ccCCCCC-hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882          111 ITNLPFD-SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV  181 (454)
Q Consensus       111 ~~~~~~~-~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll  181 (454)
                      ....... ....+.++..++...     .........+++++       ++|+.+|++|+||||+ ++|+.++..+.++|
T Consensus       100 ~~~~~~~~~~~~~~~l~~~~~l~-----~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l  174 (230)
T TIGR03410       100 LAALPRRSRKIPDEIYELFPVLK-----EMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVI  174 (230)
T ss_pred             HHhcCcchHHHHHHHHHHHHhHH-----HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHH
Confidence            1111111 122333443333110     11122233445444       6888999999999999 89999999999999


Q ss_pred             HHHHhC-Cc-EEEEecCC
Q 012882          182 SRLLST-GT-VLVATSNR  197 (454)
Q Consensus       182 ~~L~~~-G~-vlV~ThN~  197 (454)
                      .++.++ |. +|++||+.
T Consensus       175 ~~~~~~~~~tii~~sH~~  192 (230)
T TIGR03410       175 RRLRAEGGMAILLVEQYL  192 (230)
T ss_pred             HHHHHcCCcEEEEEeCCH
Confidence            999874 66 88999984

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=4.3e-16  Score=150.57  Aligned_cols=149  Identities=15%  Similarity=0.172  Sum_probs=98.9

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-------HHHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-------MLKINEHMHRLWKN--QVAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-------~~~~~~~i~~~~~~--~~~~~t~~e~l~~~  110 (454)
                      ..+++-++|+|+||||||||+++|+|.+++ ..|  .+.+.+.       ....+..+.++.+.  .....|+.+++...
T Consensus        26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G--~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~  102 (241)
T PRK10895         26 VNSGEIVGLLGPNGAGKTTTFYMVVGIVPR-DAG--NIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAV  102 (241)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCc--EEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhh
Confidence            456788999999999999999999999864 233  4443321       11123445666655  33446777776322


Q ss_pred             ccC---CCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882          111 ITN---LPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL  177 (454)
Q Consensus       111 ~~~---~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L  177 (454)
                      ...   ....  ...+++++..+++..      ........+++++       +|++.+|++|+||||+ ++|+..+..+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l  176 (241)
T PRK10895        103 LQIRDDLSAEQREDRANELMEEFHIEH------LRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDI  176 (241)
T ss_pred             hhcccccCHHHHHHHHHHHHHHcCCHH------HhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence            111   1111  123455555555432      1222334555554       6888999999999999 8999999999


Q ss_pred             HHHHHHHHhCCc-EEEEecCC
Q 012882          178 SGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       178 ~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      .+++..+.++|. +|++||+.
T Consensus       177 ~~~l~~~~~~g~tiii~sH~~  197 (241)
T PRK10895        177 KRIIEHLRDSGLGVLITDHNV  197 (241)
T ss_pred             HHHHHHHHhcCCEEEEEEcCH
Confidence            999999987776 88888874

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.65  E-value=1.5e-16  Score=155.33  Aligned_cols=150  Identities=13%  Similarity=0.120  Sum_probs=97.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-------------------HHHHHHHHHHHhhh--hh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-------------------MLKINEHMHRLWKN--QV   98 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-------------------~~~~~~~i~~~~~~--~~   98 (454)
                      ..++.-++|+|+||||||||+++|+|.+++. .  +.+.+.+.                   ....+..++++++.  ..
T Consensus        28 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~--G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~  104 (257)
T PRK10619         28 ANAGDVISIIGSSGSGKSTFLRCINFLEKPS-E--GSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLW  104 (257)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-C--eEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccC
Confidence            4567889999999999999999999998742 3  34444321                   11233455665554  23


Q ss_pred             cccchhhhhhc-c--ccCCCC--ChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCC
Q 012882           99 AEKSLRSSISG-W--ITNLPF--DSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEI  166 (454)
Q Consensus        99 ~~~t~~e~l~~-~--~~~~~~--~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp  166 (454)
                      ...++.+++.. .  ......  ....+.+++..+++....     .......+++++       +||+.+|++|+||||
T Consensus       105 ~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----~~~~~~~LS~G~~qrv~laral~~~p~llllDEP  179 (257)
T PRK10619        105 SHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA-----QGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEP  179 (257)
T ss_pred             CCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh-----hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            34677777622 1  111110  113344555555553211     011223344443       688899999999999


Q ss_pred             C-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          167 Q-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       167 ~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      + ++|+.++..+.++|.++.+.|. +|++||+.
T Consensus       180 t~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~  212 (257)
T PRK10619        180 TSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM  212 (257)
T ss_pred             cccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            9 8999999999999999987777 89999984

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.65  E-value=2.2e-16  Score=151.13  Aligned_cols=149  Identities=15%  Similarity=0.200  Sum_probs=96.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCC-----CCcccCceEEEechhH--------HHHHHHHHHHhhh--hhcccchh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGAT-----EGIVKHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLR  104 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l-----~~~~~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~  104 (454)
                      ..+++-++|+|+||||||||+++|+|..     ++ ..  +.+.+.+..        ....+.+.++.|.  .. ..|+.
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~-~~--G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~   98 (227)
T cd03260          23 IPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP-DE--GEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIY   98 (227)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC-CC--eEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHH
Confidence            3467889999999999999999999998     53 23  444443321        1223345555554  23 46777


Q ss_pred             hhhhccc--cCCCCC---hHHHHHHHHHHhhhhHHhhcchHHHH-HHHhhhhh-------hhhccCCcEEEeeCCC-CCC
Q 012882          105 SSISGWI--TNLPFD---SKVMEWVAAEEKYKQEVQMKNILPAV-ADKFLVDQ-------HADQRGASILCFDEIQ-TVD  170 (454)
Q Consensus       105 e~l~~~~--~~~~~~---~~~~e~ll~~~~l~~~~~~~~~l~~v-a~~l~~~~-------rAL~~~p~lL~LDEp~-~lD  170 (454)
                      +++....  ......   ...++.++..+++.....     ... ...+++++       +||+.+|++|+||||+ ++|
T Consensus        99 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD  173 (227)
T cd03260          99 DNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVK-----DRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALD  173 (227)
T ss_pred             HHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHh-----ccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence            7763211  111111   123445555555532111     001 23455554       6889999999999999 899


Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEecCC
Q 012882          171 VFAIVALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       171 ~~~a~~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      +..+..+.++|.++.++..+|++||+.
T Consensus       174 ~~~~~~l~~~l~~~~~~~tii~~sH~~  200 (227)
T cd03260         174 PISTAKIEELIAELKKEYTIVIVTHNM  200 (227)
T ss_pred             HHHHHHHHHHHHHHhhCcEEEEEeccH
Confidence            999999999999998773489999984

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=3.6e-16  Score=154.30  Aligned_cols=151  Identities=17%  Similarity=0.142  Sum_probs=98.4

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-----HHHHHHHHHHHhhhh---hcccchhhhhhccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-----MLKINEHMHRLWKNQ---VAEKSLRSSISGWI  111 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-----~~~~~~~i~~~~~~~---~~~~t~~e~l~~~~  111 (454)
                      ..++.-++|+|+||||||||+++|+|.+++ ..|...++....     .......++++.+..   ....|+.+++....
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~  103 (274)
T PRK13644         25 IKKGEYIGIIGKNGSGKSTLALHLNGLLRP-QKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGP  103 (274)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhH
Confidence            356788999999999999999999999874 244333332211     123344566665542   23457777763221


Q ss_pred             cCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          112 TNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       112 ~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                      .....+.    ..++.++..+++...      .......+++++       +||+.+|+||+||||+ ++|+.++..+.+
T Consensus       104 ~~~~~~~~~~~~~~~~~l~~~gl~~~------~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~  177 (274)
T PRK13644        104 ENLCLPPIEIRKRVDRALAEIGLEKY------RHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLE  177 (274)
T ss_pred             HHcCCCHHHHHHHHHHHHHHCCCHHH------hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence            1111111    234445555555321      111223444443       6889999999999999 899999999999


Q ss_pred             HHHHHHhCCc-EEEEecCC
Q 012882          180 IVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       180 ll~~L~~~G~-vlV~ThN~  197 (454)
                      +|.++.++|. +|++||+.
T Consensus       178 ~l~~l~~~g~til~~tH~~  196 (274)
T PRK13644        178 RIKKLHEKGKTIVYITHNL  196 (274)
T ss_pred             HHHHHHhCCCEEEEEecCH
Confidence            9999987777 89999985

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.65  E-value=2.1e-16  Score=149.66  Aligned_cols=148  Identities=17%  Similarity=0.164  Sum_probs=97.2

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhcccc-C
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWIT-N  113 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~-~  113 (454)
                      .+++-++|+||||||||||+++|+|..++ ..|  .+.+++..    ......+.++.|.  .....|+.+++..... .
T Consensus        22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~-~~G--~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~   98 (211)
T cd03298          22 AQGEITAIVGPSGSGKSTLLNLIAGFETP-QSG--RVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPG   98 (211)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCc--eEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccc
Confidence            46788999999999999999999999874 233  44443211    0112345565555  3345677777632211 1


Q ss_pred             CC---CChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882          114 LP---FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS  182 (454)
Q Consensus       114 ~~---~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~  182 (454)
                      ..   .....+++++..+++...      .......+++++       +|++.+|++|+||||+ ++|+.++..+.++|.
T Consensus        99 ~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~  172 (211)
T cd03298          99 LKLTAEDRQAIEVALARVGLAGL------EKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVL  172 (211)
T ss_pred             cCccHHHHHHHHHHHHHcCCHHH------HhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence            11   112344555655555321      111223445444       6888999999999999 899999999999999


Q ss_pred             HHHh-CCc-EEEEecCC
Q 012882          183 RLLS-TGT-VLVATSNR  197 (454)
Q Consensus       183 ~L~~-~G~-vlV~ThN~  197 (454)
                      ++.+ .|. +|++||+.
T Consensus       173 ~~~~~~~~tii~~sH~~  189 (211)
T cd03298         173 DLHAETKMTVLMVTHQP  189 (211)
T ss_pred             HHHHhcCCEEEEEecCH
Confidence            9975 466 88999984

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=2.6e-16  Score=156.08  Aligned_cols=151  Identities=16%  Similarity=0.200  Sum_probs=100.0

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh---hcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ---VAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~---~~~~t~~e~l~~~  110 (454)
                      ..+++-++|+|+||+|||||+++|+|.+++ ..|...+.....      .......++++.+..   ....|+.+++...
T Consensus        29 i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p-~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~  107 (283)
T PRK13636         29 IKKGEVTAILGGNGAGKSTLFQNLNGILKP-SSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFG  107 (283)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhH
Confidence            356788999999999999999999999874 244333332221      123445566666652   2345777776322


Q ss_pred             cc--CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          111 IT--NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       111 ~~--~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                      ..  .....  ...++.++..+++...      .......+++++       +||+.+|+|||||||+ ++|+..+..+.
T Consensus       108 ~~~~~~~~~~~~~~~~~~l~~~gL~~~------~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~  181 (283)
T PRK13636        108 AVNLKLPEDEVRKRVDNALKRTGIEHL------KDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM  181 (283)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHCCChhh------hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH
Confidence            11  11111  1334555565665321      122233444444       6888999999999999 89999999999


Q ss_pred             HHHHHHHhC-Cc-EEEEecCC
Q 012882          179 GIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       179 ~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      +++.++.++ |. ||++||+.
T Consensus       182 ~~l~~l~~~~g~tillvsH~~  202 (283)
T PRK13636        182 KLLVEMQKELGLTIIIATHDI  202 (283)
T ss_pred             HHHHHHHHhCCCEEEEEecCH
Confidence            999999865 66 89999985

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.65  E-value=1.9e-16  Score=159.49  Aligned_cols=174  Identities=13%  Similarity=0.092  Sum_probs=117.7

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh--hhcccchhhhhhccccC-
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN--QVAEKSLRSSISGWITN-  113 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~-  113 (454)
                      ..+.-+.|+||+|||||||+++|+|...|. .  ++|.+.+-    ..--.+.++.+.|.  +++.+|+.+|+...+.. 
T Consensus        29 ~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~-~--G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~  105 (352)
T COG3842          29 KKGEFVTLLGPSGCGKTTLLRMIAGFEQPS-S--GEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR  105 (352)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCCC-C--ceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc
Confidence            445569999999999999999999988642 3  34443321    11223566777776  77888888888444331 


Q ss_pred             C-CCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882          114 L-PFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV  181 (454)
Q Consensus       114 ~-~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll  181 (454)
                      . ....   .++++++...++.+      ...+...++++++       |||+.+|+||+||||. .||..-+..+..-+
T Consensus       106 ~~~~~~~i~~rv~e~L~lV~L~~------~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~El  179 (352)
T COG3842         106 KKLKKAEIKARVEEALELVGLEG------FADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKEL  179 (352)
T ss_pred             CCCCHHHHHHHHHHHHHHcCchh------hhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHH
Confidence            1 1212   34455555555533      1233344566665       7899999999999999 79999999999999


Q ss_pred             HHHHhC-Cc-EEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCchh
Q 012882          182 SRLLST-GT-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVD  233 (454)
Q Consensus       182 ~~L~~~-G~-vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~D  233 (454)
                      .++.++ |. .|++||+...+--..+++          .+++.+++...+++.+
T Consensus       180 k~lq~~~giT~i~VTHDqeEAl~msDrI----------~Vm~~G~I~Q~gtP~e  223 (352)
T COG3842         180 KELQRELGITFVYVTHDQEEALAMSDRI----------AVMNDGRIEQVGTPEE  223 (352)
T ss_pred             HHHHHhcCCeEEEEECCHHHHhhhccce----------EEccCCceeecCCHHH
Confidence            998754 77 999999975555444442          3456666666666644

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.65  E-value=3.2e-16  Score=149.88  Aligned_cols=150  Identities=15%  Similarity=0.166  Sum_probs=94.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---------HHHHHHHHHHhhhh----hcccchhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---------LKINEHMHRLWKNQ----VAEKSLRSS  106 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---------~~~~~~i~~~~~~~----~~~~t~~e~  106 (454)
                      ..+++-++|+||||||||||+++|+|..++ ..|  .+.+++..         ...++.+.++.+..    ....|+.++
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G--~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~n  104 (228)
T cd03257          28 IKKGETLGLVGESGSGKSTLARAILGLLKP-TSG--SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQ  104 (228)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCc--eEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHH
Confidence            456778999999999999999999999864 233  44443211         12234455555542    234677777


Q ss_pred             hhcccc--CCCCChHH----HHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHH
Q 012882          107 ISGWIT--NLPFDSKV----MEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVF  172 (454)
Q Consensus       107 l~~~~~--~~~~~~~~----~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~  172 (454)
                      +.....  ........    .++++..+++..     .........+++++       ++|+.+|++|+||||+ ++|+.
T Consensus       105 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~  179 (228)
T cd03257         105 IAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE-----EVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVS  179 (228)
T ss_pred             HHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh-----hHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHH
Confidence            632111  11111111    123444444421     01112223445444       6888999999999999 89999


Q ss_pred             HHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          173 AIVALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       173 ~a~~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      ++..+.++|.++.++ |. ||++||+.
T Consensus       180 ~~~~l~~~l~~~~~~~~~tii~~sH~~  206 (228)
T cd03257         180 VQAQILDLLKKLQEELGLTLLFITHDL  206 (228)
T ss_pred             HHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            999999999999865 66 88999984

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=1.8e-16  Score=154.80  Aligned_cols=149  Identities=15%  Similarity=0.156  Sum_probs=95.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH-HHHHHHHHHhhh--hhcccchhhhhhccc--cCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML-KINEHMHRLWKN--QVAEKSLRSSISGWI--TNL  114 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~-~~~~~i~~~~~~--~~~~~t~~e~l~~~~--~~~  114 (454)
                      ..++.-++|+||||||||||+++|+|.+++ ..|  .+.+++.-. .....++++.+.  .....|+.+++....  ...
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G--~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~  100 (255)
T PRK11248         24 LESGELLVVLGPSGCGKTTLLNLIAGFVPY-QHG--SITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGV  100 (255)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCc--EEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCC
Confidence            346778999999999999999999999864 233  444432110 011123444444  234456777663211  111


Q ss_pred             CCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHH
Q 012882          115 PFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRL  184 (454)
Q Consensus       115 ~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L  184 (454)
                      ...  ...+++++..+++...      .......+++++       ++|+.+|++|+||||+ ++|+..+..+.++|..+
T Consensus       101 ~~~~~~~~~~~~l~~~gl~~~------~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~  174 (255)
T PRK11248        101 EKMQRLEIAHQMLKKVGLEGA------EKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKL  174 (255)
T ss_pred             CHHHHHHHHHHHHHHcCChhH------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            111  1234455555555321      112234455554       6889999999999999 89999999999999998


Q ss_pred             Hh-CCc-EEEEecCC
Q 012882          185 LS-TGT-VLVATSNR  197 (454)
Q Consensus       185 ~~-~G~-vlV~ThN~  197 (454)
                      .+ .|. +|++||+.
T Consensus       175 ~~~~g~tviivsH~~  189 (255)
T PRK11248        175 WQETGKQVLLITHDI  189 (255)
T ss_pred             HHhcCCEEEEEeCCH
Confidence            64 466 89999984

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.65  E-value=2.1e-16  Score=150.08  Aligned_cols=149  Identities=17%  Similarity=0.195  Sum_probs=97.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhcccc-
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWIT-  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~-  112 (454)
                      ..++.-++|.||||+|||||+++|+|.+++.   .+++.+.+.-    ......+.++.+.  .....|+.+++..... 
T Consensus        21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~   97 (213)
T TIGR01277        21 VADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHP   97 (213)
T ss_pred             EeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhc
Confidence            3467889999999999999999999998742   3455543321    1122345555554  3344677777632111 


Q ss_pred             CCC-C--ChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882          113 NLP-F--DSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV  181 (454)
Q Consensus       113 ~~~-~--~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll  181 (454)
                      ... .  .....++++..+++...      .......+++++       ++++.+|+||+||||+ ++|+.++..+.++|
T Consensus        98 ~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l  171 (213)
T TIGR01277        98 GLKLNAEQQEKVVDAAQQVGIADY------LDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALV  171 (213)
T ss_pred             cCCccHHHHHHHHHHHHHcCcHHH------hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence            110 1  12334455555555321      122233444444       6888999999999999 89999999999999


Q ss_pred             HHHHhC-Cc-EEEEecCC
Q 012882          182 SRLLST-GT-VLVATSNR  197 (454)
Q Consensus       182 ~~L~~~-G~-vlV~ThN~  197 (454)
                      .++.++ |. +|++||+.
T Consensus       172 ~~~~~~~~~tii~vsh~~  189 (213)
T TIGR01277       172 KQLCSERQRTLLMVTHHL  189 (213)
T ss_pred             HHHHHhcCCEEEEEeCCH
Confidence            999764 66 88888884

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.65  E-value=2.2e-16  Score=161.43  Aligned_cols=149  Identities=13%  Similarity=0.114  Sum_probs=101.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEech--hH----HHH----HHHHHHHhhh--hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE--AM----LKI----NEHMHRLWKN--QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~--f~----~~~----~~~i~~~~~~--~~~~~t~~e~l  107 (454)
                      ...++-++|+||||||||||+++|+|..++. .|  .+.+++  ..    ..+    +..++++.|.  ..+.+|+.+++
T Consensus        16 i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~-~G--~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi   92 (363)
T TIGR01186        16 IAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT-AG--QIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNT   92 (363)
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhCCCCCC-ce--EEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHH
Confidence            3567889999999999999999999999752 33  444432  11    111    3345666655  45567888877


Q ss_pred             hccccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          108 SGWITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       108 ~~~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      ........++.    ..+.+++..+++..      ........+++++       |||+.+|+||+||||+ ++|+..+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~l~~vgL~~------~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~  166 (363)
T TIGR01186        93 SLGPELLGWPEQERKEKALELLKLVGLEE------YEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRD  166 (363)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhcCCch------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence            32221111221    33445555555532      2233344566665       7999999999999999 89999999


Q ss_pred             HHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          176 ALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       176 ~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      .+.+++..+.+. |. +|++||+.
T Consensus       167 ~l~~~l~~l~~~~~~Tii~vTHd~  190 (363)
T TIGR01186       167 SMQDELKKLQATLQKTIVFITHDL  190 (363)
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCH
Confidence            999999999754 66 99999985

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=1.5e-16  Score=157.26  Aligned_cols=149  Identities=16%  Similarity=0.202  Sum_probs=97.3

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh---hcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ---VAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~---~~~~t~~e~l~~~  110 (454)
                      ..++.-++|+|+||||||||+++|+|.+++ ..  +.+.+.+.      .......+.++.+..   ....|+.+++...
T Consensus        27 i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p-~~--G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~  103 (277)
T PRK13652         27 APRNSRIAVIGPNGAGKSTLFRHFNGILKP-TS--GSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFG  103 (277)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCC-Cc--eEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhH
Confidence            346788999999999999999999999874 23  34444321      123344555555542   2245777766322


Q ss_pred             ccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          111 ITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       111 ~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                      ......+.    ..++.++..+++...      .......+++++       +||+.+|++|+||||+ ++|+.++..+.
T Consensus       104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~  177 (277)
T PRK13652        104 PINLGLDEETVAHRVSSALHMLGLEEL------RDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELI  177 (277)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHCCChhH------hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence            11111121    233445555554321      112233445444       6889999999999999 89999999999


Q ss_pred             HHHHHHHhC-Cc-EEEEecCC
Q 012882          179 GIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       179 ~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      ++|.++.++ |. ||++||+.
T Consensus       178 ~~l~~l~~~~g~tvli~tH~~  198 (277)
T PRK13652        178 DFLNDLPETYGMTVIFSTHQL  198 (277)
T ss_pred             HHHHHHHHhcCCEEEEEecCH
Confidence            999999875 76 88899884

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=5.4e-16  Score=153.51  Aligned_cols=151  Identities=14%  Similarity=0.116  Sum_probs=100.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhhh---hcccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKNQ---VAEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~~---~~~~t~~e~l~~~~~  112 (454)
                      ..+++-++|+|+||||||||+++|+|.+++ ..|+..+.....    .....+.++++.|..   ....|+.+++.....
T Consensus        30 i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p-~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~  108 (279)
T PRK13635         30 VYEGEWVAIVGHNGSGKSTLAKLLNGLLLP-EAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLE  108 (279)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHh
Confidence            346788999999999999999999999875 244333332221    123344566666642   334577777732211


Q ss_pred             CCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882          113 NLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI  180 (454)
Q Consensus       113 ~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l  180 (454)
                      ......    ..++.++..+++...      +......+++++       +||+.+|+||+||||+ +||+.++..+.++
T Consensus       109 ~~~~~~~~~~~~~~~~l~~~gL~~~------~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~  182 (279)
T PRK13635        109 NIGVPREEMVERVDQALRQVGMEDF------LNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLET  182 (279)
T ss_pred             hCCCCHHHHHHHHHHHHHHcCChhh------hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence            111111    234455555555321      222334455554       6889999999999999 8999999999999


Q ss_pred             HHHHHhC-Cc-EEEEecCC
Q 012882          181 VSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       181 l~~L~~~-G~-vlV~ThN~  197 (454)
                      |.++.+. |. ||++||+.
T Consensus       183 l~~l~~~~~~tilivsH~~  201 (279)
T PRK13635        183 VRQLKEQKGITVLSITHDL  201 (279)
T ss_pred             HHHHHHcCCCEEEEEecCH
Confidence            9999875 76 88999985

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.65  E-value=8.2e-16  Score=157.85  Aligned_cols=166  Identities=18%  Similarity=0.198  Sum_probs=117.3

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCc-----eEEEechhHHHHHHHHHHHhhh--hhcccchhhhhhccccC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHR-----QRFHFHEAMLKINEHMHRLWKN--QVAEKSLRSSISGWITN  113 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k-----~rv~f~~f~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~  113 (454)
                      .++.--.|+|.||+||||||++|||.+.|. .+.     ..+.|++........|+.+.|+  +.+.+|+.||+......
T Consensus        28 ~~GeIHaLLGENGAGKSTLm~iL~G~~~P~-~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~  106 (501)
T COG3845          28 KKGEIHALLGENGAGKSTLMKILFGLYQPD-SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEP  106 (501)
T ss_pred             cCCcEEEEeccCCCCHHHHHHHHhCcccCC-cceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCcc
Confidence            456678999999999999999999998753 333     3456677777778888888887  67889999998444332


Q ss_pred             C---CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          114 L---PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       114 ~---~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                      .   ..+.    ..++.+....++.-     ++ ......++.+.       ++|++++++||||||| +|-+..+..|.
T Consensus       107 ~~~~~~~~~~~~~~i~~l~~~yGl~v-----dp-~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf  180 (501)
T COG3845         107 SKGGLIDRRQARARIKELSERYGLPV-----DP-DAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELF  180 (501)
T ss_pred             ccccccCHHHHHHHHHHHHHHhCCCC-----Cc-cceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence            1   2222    23334444444421     11 11122222221       6888999999999999 89999999999


Q ss_pred             HHHHHHHhCCc-EEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccC
Q 012882          179 GIVSRLLSTGT-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIG  229 (454)
Q Consensus       179 ~ll~~L~~~G~-vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~  229 (454)
                      .+++.|.+.|+ ||++||-.                ..+..+.++++|+.-+
T Consensus       181 ~~l~~l~~~G~tIi~ITHKL----------------~Ev~~iaDrvTVLR~G  216 (501)
T COG3845         181 EILRRLAAEGKTIIFITHKL----------------KEVMAIADRVTVLRRG  216 (501)
T ss_pred             HHHHHHHHCCCEEEEEeccH----------------HHHHHhhCeeEEEeCC
Confidence            99999999999 99999852                3455667777777554

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.65  E-value=5.2e-16  Score=149.65  Aligned_cols=149  Identities=15%  Similarity=0.085  Sum_probs=96.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-----HHHHHHHHHHhhh--hhcccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-----LKINEHMHRLWKN--QVAEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~  112 (454)
                      ..+++-++|+|+||||||||+++|+|..++.   .+.+.+++..     ......+.++.+.  .....|+.+++.....
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~  100 (236)
T TIGR03864        24 VRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAA  100 (236)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHH
Confidence            3567889999999999999999999998642   3445443311     1112345555554  2245677776632111


Q ss_pred             CCCCC----hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882          113 NLPFD----SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI  180 (454)
Q Consensus       113 ~~~~~----~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l  180 (454)
                      .....    ...++.++..+++...      +......+++++       +||+.+|+||+||||+ ++|+..+..+.++
T Consensus       101 ~~~~~~~~~~~~~~~~l~~~gl~~~------~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~  174 (236)
T TIGR03864       101 LHGLSRAEARERIAALLARLGLAER------ADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAH  174 (236)
T ss_pred             hcCCCHHHHHHHHHHHHHHcCChhh------hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHH
Confidence            11111    1233444555544321      122233455554       6889999999999999 8999999999999


Q ss_pred             HHHHHh-CCc-EEEEecCC
Q 012882          181 VSRLLS-TGT-VLVATSNR  197 (454)
Q Consensus       181 l~~L~~-~G~-vlV~ThN~  197 (454)
                      |..+.+ +|. +|++||+.
T Consensus       175 l~~~~~~~~~tiii~sH~~  193 (236)
T TIGR03864       175 VRALCRDQGLSVLWATHLV  193 (236)
T ss_pred             HHHHHHhCCCEEEEEecCh
Confidence            999975 466 89999985

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=3.4e-16  Score=151.46  Aligned_cols=150  Identities=11%  Similarity=0.125  Sum_probs=94.9

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--H----HHHHHHHHHHhhhh-hcccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--M----LKINEHMHRLWKNQ-VAEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--~----~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~  112 (454)
                      ..+++-++|+|+||||||||+++|+|.+++ ..|  .+.+++.  .    ......+.++.+.. ....++.+++.....
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G--~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~  102 (241)
T PRK14250         26 FEGGAIYTIVGPSGAGKSTLIKLINRLIDP-TEG--SILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPM  102 (241)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCc--EEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhcchh
Confidence            346778999999999999999999999864 233  4444331  1    12233445555541 112466666532111


Q ss_pred             CCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHH
Q 012882          113 NLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRL  184 (454)
Q Consensus       113 ~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L  184 (454)
                      ........++.++..+++...     ........+++++       +|++.+|++|+||||+ ++|+.++..+.++|.++
T Consensus       103 ~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  177 (241)
T PRK14250        103 LKGEKNVDVEYYLSIVGLNKE-----YATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKL  177 (241)
T ss_pred             hcCcHHHHHHHHHHHcCCCHH-----HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            111112344555555555210     0111223344443       6888999999999999 89999999999999999


Q ss_pred             HhC-Cc-EEEEecCC
Q 012882          185 LST-GT-VLVATSNR  197 (454)
Q Consensus       185 ~~~-G~-vlV~ThN~  197 (454)
                      .++ |. ||++||+.
T Consensus       178 ~~~~g~tii~~sH~~  192 (241)
T PRK14250        178 KNKMNLTVIWITHNM  192 (241)
T ss_pred             HHhCCCEEEEEeccH
Confidence            764 66 89999984

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.64  E-value=3.1e-16  Score=155.08  Aligned_cols=149  Identities=14%  Similarity=0.146  Sum_probs=95.5

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----------HHHHHHHHHHHhhhh---hcccchhhhh
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----------MLKINEHMHRLWKNQ---VAEKSLRSSI  107 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----------~~~~~~~i~~~~~~~---~~~~t~~e~l  107 (454)
                      .++.-++|+||||||||||+++|+|.+++ ..|  .+.+++.          .......+.++.+..   ....|+.+++
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p-~~G--~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l  107 (280)
T PRK13649         31 EDGSYTAFIGHTGSGKSTIMQLLNGLHVP-TQG--SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDV  107 (280)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCC-Cce--EEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHH
Confidence            46677999999999999999999999874 233  4443321          122344566666542   2234777766


Q ss_pred             hccccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          108 SGWITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       108 ~~~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      ...........    ..++.++..+++...     ........+++++       +||+.+|+||+||||+ +||+.++.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~  182 (280)
T PRK13649        108 AFGPQNFGVSQEEAEALAREKLALVGISES-----LFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRK  182 (280)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHcCCChh-----hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence            32111111111    223344444444210     1112233444444       6888999999999999 89999999


Q ss_pred             HHHHHHHHHHhCCc-EEEEecCC
Q 012882          176 ALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       176 ~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      .+.++|..+.++|. ||++||+.
T Consensus       183 ~l~~~l~~~~~~~~tiiivsH~~  205 (280)
T PRK13649        183 ELMTLFKKLHQSGMTIVLVTHLM  205 (280)
T ss_pred             HHHHHHHHHHHCCCEEEEEeccH
Confidence            99999999987676 89999984

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.64  E-value=2e-16  Score=161.72  Aligned_cols=148  Identities=16%  Similarity=0.164  Sum_probs=98.8

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----------HHHHHHHHHHhhh--hhcccchhhhhh
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----------LKINEHMHRLWKN--QVAEKSLRSSIS  108 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----------~~~~~~i~~~~~~--~~~~~t~~e~l~  108 (454)
                      .+++-++|+||||||||||+++|+|..++. .  +.+.+++..          ......++++.|.  ..+.+|+.+++.
T Consensus        21 ~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~-~--G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~   97 (354)
T TIGR02142        21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPD-E--GEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLR   97 (354)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCC-c--eEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHH
Confidence            456779999999999999999999998742 3  344443211          1122345555554  344567877773


Q ss_pred             ccccCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          109 GWITNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       109 ~~~~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                      .........  ...+++++..+++...      .......+++++       +||+.+|++|+||||+ ++|+..+..+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~l~~~gL~~~------~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~  171 (354)
T TIGR02142        98 YGMKRARPSERRISFERVIELLGIGHL------LGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEIL  171 (354)
T ss_pred             HHhhccChhHHHHHHHHHHHHcCChhH------hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH
Confidence            221111111  1234555665555321      122334555554       6889999999999999 89999999999


Q ss_pred             HHHHHHHhC-Cc-EEEEecCC
Q 012882          179 GIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       179 ~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      ++|.++.++ |. +|++||+.
T Consensus       172 ~~L~~l~~~~g~tiiivtH~~  192 (354)
T TIGR02142       172 PYLERLHAEFGIPILYVSHSL  192 (354)
T ss_pred             HHHHHHHHhcCCEEEEEecCH
Confidence            999999875 66 99999985

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.64  E-value=5.9e-16  Score=148.33  Aligned_cols=149  Identities=13%  Similarity=0.156  Sum_probs=96.4

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HH---H-HHHHHHHhhh--hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LK---I-NEHMHRLWKN--QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~---~-~~~i~~~~~~--~~~~~t~~e~l  107 (454)
                      ..+++-++|+|+||||||||+++|+|..++. .  +.+.+.+..      ..   . +..+.++.+.  .....|+.+++
T Consensus        33 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~-~--G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l  109 (228)
T PRK10584         33 VKRGETIALIGESGSGKSTLLAILAGLDDGS-S--GEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENV  109 (228)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-C--eeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHH
Confidence            3567889999999999999999999998642 3  445543311      00   1 1235555554  23345677766


Q ss_pred             hcc--ccCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          108 SGW--ITNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       108 ~~~--~~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      ...  .......  ...+++++..+++...      .......+++++       +||+.+|++|+||||+ ++|+.++.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~  183 (228)
T PRK10584        110 ELPALLRGESSRQSRNGAKALLEQLGLGKR------LDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGD  183 (228)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHcCCHhH------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence            221  1111111  1234455555555321      122234455554       6889999999999999 89999999


Q ss_pred             HHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          176 ALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       176 ~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      .+.++|.++.++ |. ||++||+.
T Consensus       184 ~l~~~l~~~~~~~~~tii~~sH~~  207 (228)
T PRK10584        184 KIADLLFSLNREHGTTLILVTHDL  207 (228)
T ss_pred             HHHHHHHHHHHhcCCEEEEEecCH
Confidence            999999999754 65 89999984

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.64  E-value=1.1e-15  Score=159.53  Aligned_cols=151  Identities=17%  Similarity=0.149  Sum_probs=107.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCce-----EEEechhHHHHHHHHHHHhhh--hhcccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQ-----RFHFHEAMLKINEHMHRLWKN--QVAEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~-----rv~f~~f~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~  112 (454)
                      ..++.-..|+|.||||||||||+|+|..++. .+..     .+.|.+........|..+.|+  +.+++|+.+|+|....
T Consensus        31 v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~-~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre  109 (500)
T COG1129          31 VRPGEVHALLGENGAGKSTLMKILSGVYPPD-SGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGRE  109 (500)
T ss_pred             EeCceEEEEecCCCCCHHHHHHHHhCcccCC-CceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccc
Confidence            4567889999999999999999999998752 3322     233444444555667777777  6789999999976554


Q ss_pred             CCC----CCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882          113 NLP----FDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA  176 (454)
Q Consensus       113 ~~~----~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~  176 (454)
                      ...    .+.    ..++.++..+++..     + ....+..|+.++       +|+..+++|||||||| .|+......
T Consensus       110 ~~~~~g~id~~~m~~~A~~~l~~lg~~~-----~-~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~  183 (500)
T COG1129         110 PTRRFGLIDRKAMRRRARELLARLGLDI-----D-PDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETER  183 (500)
T ss_pred             cccCCCccCHHHHHHHHHHHHHHcCCCC-----C-hhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence            432    122    34445555554420     1 122223333222       6777999999999999 899999999


Q ss_pred             HHHHHHHHHhCCc-EEEEecCC
Q 012882          177 LSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       177 L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      |.+++++|.++|+ +|++||+.
T Consensus       184 Lf~~ir~Lk~~Gv~ii~ISHrl  205 (500)
T COG1129         184 LFDLIRRLKAQGVAIIYISHRL  205 (500)
T ss_pred             HHHHHHHHHhCCCEEEEEcCcH
Confidence            9999999999999 99999974

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.64  E-value=1.7e-16  Score=162.03  Aligned_cols=148  Identities=17%  Similarity=0.156  Sum_probs=101.9

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhccccCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWITNL  114 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~  114 (454)
                      ..++-++|+||||||||||+++|+|..++. .  +.+.+.+..    ....+.++++.|.  ..+.+|+.+++.......
T Consensus        26 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~-~--G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~  102 (353)
T PRK10851         26 PSGQMVALLGPSGSGKTTLLRIIAGLEHQT-S--GHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVL  102 (353)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCC-C--cEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhc
Confidence            467889999999999999999999998742 3  344443211    1122346666665  456678888873322110


Q ss_pred             ----CCC----hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          115 ----PFD----SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       115 ----~~~----~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                          ..+    ...+++++..+++...      .......+++++       |||+.+|++|+||||+ +||+..+..+.
T Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~~L~~~------~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~  176 (353)
T PRK10851        103 PRRERPNAAAIKAKVTQLLEMVQLAHL------ADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELR  176 (353)
T ss_pred             ccccCCCHHHHHHHHHHHHHHcCCchh------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence                111    1344556666665321      222344556554       7899999999999999 89999999999


Q ss_pred             HHHHHHHhC-Cc-EEEEecCC
Q 012882          179 GIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       179 ~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      ++|.++.++ |. +|++|||.
T Consensus       177 ~~L~~l~~~~g~tii~vTHd~  197 (353)
T PRK10851        177 RWLRQLHEELKFTSVFVTHDQ  197 (353)
T ss_pred             HHHHHHHHhcCCEEEEEeCCH
Confidence            999999875 66 99999985

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.64  E-value=7.2e-16  Score=145.04  Aligned_cols=150  Identities=15%  Similarity=0.080  Sum_probs=106.3

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-------HHHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-------MLKINEHMHRLWKN--QVAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-------~~~~~~~i~~~~~~--~~~~~t~~e~l~~~  110 (454)
                      .+.++-+.|+|+||+||||||++|+|.+++   ..++|.|...       -..++..+.++++.  .++.+|+.||+...
T Consensus        26 v~~Geiv~llG~NGaGKTTlLkti~Gl~~~---~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g  102 (237)
T COG0410          26 VERGEIVALLGRNGAGKTTLLKTIMGLVRP---RSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLG  102 (237)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhh
Confidence            356778999999999999999999999974   2456666432       23456667788776  68889999998544


Q ss_pred             ccCCCC---ChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          111 ITNLPF---DSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       111 ~~~~~~---~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                      ......   .....+.+...+-..     .+...+.+..+++++       |||+.+|++|+||||+ +|-|.-...+.+
T Consensus       103 ~~~~~~~~~~~~~~e~v~~lFP~L-----ker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~  177 (237)
T COG0410         103 AYARRDKEAQERDLEEVYELFPRL-----KERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFE  177 (237)
T ss_pred             hhcccccccccccHHHHHHHChhH-----HHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHH
Confidence            333221   111144444433321     122233455555554       7889999999999999 999999999999


Q ss_pred             HHHHHHhC-Cc-EEEEecCC
Q 012882          180 IVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       180 ll~~L~~~-G~-vlV~ThN~  197 (454)
                      .+..|.++ |. |+++-.|.
T Consensus       178 ~i~~l~~~~g~tIlLVEQn~  197 (237)
T COG0410         178 AIKELRKEGGMTILLVEQNA  197 (237)
T ss_pred             HHHHHHHcCCcEEEEEeccH
Confidence            99999976 65 88888773

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.64  E-value=3.1e-16  Score=155.85  Aligned_cols=153  Identities=14%  Similarity=0.111  Sum_probs=98.4

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh---hcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ---VAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~---~~~~t~~e~l~~~  110 (454)
                      ..++.-++|+|+||||||||+++|+|.+++. .|...+.....      ...+...++++.|..   ....|+.+++...
T Consensus        30 i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~  108 (287)
T PRK13637         30 IEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT-SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFG  108 (287)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-ccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhH
Confidence            3467889999999999999999999998742 33333322111      123345566666642   2245777776322


Q ss_pred             ccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          111 ITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       111 ~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                      ........    ..++.++..+++...    .........+++++       +||+.+|++|+||||+ +||+..+..+.
T Consensus       109 ~~~~~~~~~~~~~~~~~~l~~~gL~~~----~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~  184 (287)
T PRK13637        109 PINLGLSEEEIENRVKRAMNIVGLDYE----DYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEIL  184 (287)
T ss_pred             HHHCCCCHHHHHHHHHHHHHHcCCCch----hhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHH
Confidence            11111111    234455555555300    00111223444443       6889999999999999 89999999999


Q ss_pred             HHHHHHHhC-Cc-EEEEecCC
Q 012882          179 GIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       179 ~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      ++|.++.++ |. ||++||+.
T Consensus       185 ~~l~~l~~~~g~tvi~vtHd~  205 (287)
T PRK13637        185 NKIKELHKEYNMTIILVSHSM  205 (287)
T ss_pred             HHHHHHHHhcCCEEEEEeCCH
Confidence            999999865 76 99999985

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.64  E-value=4.7e-16  Score=153.54  Aligned_cols=149  Identities=14%  Similarity=0.148  Sum_probs=98.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH--------HHHHHHHHHHhhhh---hcccchhhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM--------LKINEHMHRLWKNQ---VAEKSLRSSIS  108 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~--------~~~~~~i~~~~~~~---~~~~t~~e~l~  108 (454)
                      ..++.-++|+|+||||||||+++|+|.+++. .  +.+.+.+..        ......++++.+..   ....++.+++.
T Consensus        25 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~-~--G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~  101 (275)
T PRK13639         25 AEKGEMVALLGPNGAGKSTLFLHFNGILKPT-S--GEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVA  101 (275)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-c--cEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHH
Confidence            3567889999999999999999999998742 3  344443311        12345566666652   23357777763


Q ss_pred             ccccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882          109 GWITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA  176 (454)
Q Consensus       109 ~~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~  176 (454)
                      ..........    ..+..++..+++.+.      .......+++++       +||+.+|+||+||||+ ++|+.++..
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~------~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~  175 (275)
T PRK13639        102 FGPLNLGLSKEEVEKRVKEALKAVGMEGF------ENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ  175 (275)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHCCCchh------hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence            2111111111    233444555554321      112234455554       6889999999999999 899999999


Q ss_pred             HHHHHHHHHhCCc-EEEEecCC
Q 012882          177 LSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       177 L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      +.++|.++.++|. ||++||+.
T Consensus       176 l~~~l~~l~~~~~til~vtH~~  197 (275)
T PRK13639        176 IMKLLYDLNKEGITIIISTHDV  197 (275)
T ss_pred             HHHHHHHHHHCCCEEEEEecCH
Confidence            9999999987776 99999985

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.64  E-value=2.5e-16  Score=151.41  Aligned_cols=148  Identities=14%  Similarity=0.183  Sum_probs=97.0

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH----HHHHHHHHHhhh--hhcccchhhhhhcccc-C
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML----KINEHMHRLWKN--QVAEKSLRSSISGWIT-N  113 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~----~~~~~i~~~~~~--~~~~~t~~e~l~~~~~-~  113 (454)
                      .+++-++|+|+||||||||+++|+|..++ ..|  .+.+.+...    .....++++.+.  .....|+.+++..... .
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G--~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~   99 (232)
T PRK10771         23 ERGERVAILGPSGAGKSTLLNLIAGFLTP-ASG--SLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG   99 (232)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCc--eEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccc
Confidence            46788999999999999999999999874 233  444432110    112345555554  3344677777732211 1


Q ss_pred             CCCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882          114 LPFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS  182 (454)
Q Consensus       114 ~~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~  182 (454)
                      ....   ...++.++..+++...      .......+++++       +|++.+|++|+||||+ ++|+.++..+.++|.
T Consensus       100 ~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~  173 (232)
T PRK10771        100 LKLNAAQREKLHAIARQMGIEDL------LARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVS  173 (232)
T ss_pred             cCCCHHHHHHHHHHHHHcCcHHH------HhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            1111   1334555555555321      122233455444       6888999999999999 899999999999999


Q ss_pred             HHHhC-Cc-EEEEecCC
Q 012882          183 RLLST-GT-VLVATSNR  197 (454)
Q Consensus       183 ~L~~~-G~-vlV~ThN~  197 (454)
                      ++.++ |. +|++||+.
T Consensus       174 ~~~~~~~~tiii~sH~~  190 (232)
T PRK10771        174 QVCQERQLTLLMVSHSL  190 (232)
T ss_pred             HHHHhcCCEEEEEECCH
Confidence            98764 66 89999985

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.64  E-value=6.6e-16  Score=148.92  Aligned_cols=149  Identities=15%  Similarity=0.156  Sum_probs=94.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-------HHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-------LKINEHMHRLWKN--QVAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-------~~~~~~i~~~~~~--~~~~~t~~e~l~~~  110 (454)
                      ..++.-++|+|+||||||||+++|+|..++ ..|  .+.+++..       ......++++.+.  .....|+.+++...
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-~~G--~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~  104 (237)
T PRK11614         28 INQGEIVTLIGANGAGKTTLLGTLCGDPRA-TSG--RIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMG  104 (237)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHcCCCCC-CCc--eEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHh
Confidence            356788999999999999999999999874 233  44443311       1123345555554  33445777766321


Q ss_pred             ccCCCCC--hHHHHHHHHHH-hhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          111 ITNLPFD--SKVMEWVAAEE-KYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       111 ~~~~~~~--~~~~e~ll~~~-~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                      .......  ...++.++..+ ++..      ........+++++       ++|+.+|+||+||||+ ++|+..+..+.+
T Consensus       105 ~~~~~~~~~~~~~~~~l~~~~~l~~------~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~  178 (237)
T PRK11614        105 GFFAERDQFQERIKWVYELFPRLHE------RRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFD  178 (237)
T ss_pred             hhccChhHHHHHHHHHHHHHHHHHH------HHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHH
Confidence            1111111  12223333333 1211      1111233455544       6888999999999999 899999999999


Q ss_pred             HHHHHHhCCc-EEEEecCC
Q 012882          180 IVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       180 ll~~L~~~G~-vlV~ThN~  197 (454)
                      +|.++.++|. +|++||+.
T Consensus       179 ~l~~~~~~~~tiii~sH~~  197 (237)
T PRK11614        179 TIEQLREQGMTIFLVEQNA  197 (237)
T ss_pred             HHHHHHHCCCEEEEEeCcH
Confidence            9999987777 88888874

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.64  E-value=2.4e-16  Score=156.68  Aligned_cols=150  Identities=14%  Similarity=0.139  Sum_probs=95.0

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----------HHHHHHHHHHHhhhh---hcccchhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----------MLKINEHMHRLWKNQ---VAEKSLRSS  106 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----------~~~~~~~i~~~~~~~---~~~~t~~e~  106 (454)
                      ...++-++|+|+||||||||+++|+|.+++. .|  .+.+.+.          .......++++.|..   ....|+.++
T Consensus        29 i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~-~G--~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~  105 (288)
T PRK13643         29 VKKGSYTALIGHTGSGKSTLLQHLNGLLQPT-EG--KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKD  105 (288)
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhcCCCCC-Cc--EEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHH
Confidence            3467889999999999999999999998742 34  4444321          122344555555531   122466666


Q ss_pred             hhccccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882          107 ISGWITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI  174 (454)
Q Consensus       107 l~~~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a  174 (454)
                      +.........+.    ..+.+++..+++...     ........+++++       ++|+.+|++|+||||+ ++|+.++
T Consensus       106 l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~  180 (288)
T PRK13643        106 VAFGPQNFGIPKEKAEKIAAEKLEMVGLADE-----FWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKAR  180 (288)
T ss_pred             HHhHHHHcCCCHHHHHHHHHHHHHHcCCChh-----hccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHH
Confidence            622111111111    223444444444210     0111223344443       6888999999999999 8999999


Q ss_pred             HHHHHHHHHHHhCCc-EEEEecCC
Q 012882          175 VALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       175 ~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      ..+.++|.++.++|. ||++||+.
T Consensus       181 ~~l~~~l~~l~~~g~til~vtHd~  204 (288)
T PRK13643        181 IEMMQLFESIHQSGQTVVLVTHLM  204 (288)
T ss_pred             HHHHHHHHHHHHCCCEEEEEecCH
Confidence            999999999987776 99999985

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.64  E-value=6.6e-16  Score=151.27  Aligned_cols=152  Identities=14%  Similarity=0.080  Sum_probs=99.2

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-----------HHHHHHHHHHhhh--hhcccchhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-----------LKINEHMHRLWKN--QVAEKSLRSS  106 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-----------~~~~~~i~~~~~~--~~~~~t~~e~  106 (454)
                      ..+++-++|+|+||||||||+++|+|.+++.....+.+.+++..           ......++++.+.  ....+|+.++
T Consensus        27 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~  106 (262)
T PRK09984         27 IHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLEN  106 (262)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHH
Confidence            35678899999999999999999999986421113455554321           1223345666655  3345677777


Q ss_pred             hhccccCC--------C-CC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC
Q 012882          107 ISGWITNL--------P-FD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ  167 (454)
Q Consensus       107 l~~~~~~~--------~-~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~  167 (454)
                      +.......        . ..   ...++.++..+++...      .......+++++       +||+.+|+||+||||+
T Consensus       107 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt  180 (262)
T PRK09984        107 VLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHF------AHQRVSTLSGGQQQRVAIARALMQQAKVILADEPI  180 (262)
T ss_pred             HHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHH------HhCCccccCHHHHHHHHHHHHHhcCCCEEEecCcc
Confidence            73221100        0 01   1344555665555321      111223344443       6888999999999999


Q ss_pred             -CCCHHHHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          168 -TVDVFAIVALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       168 -~lD~~~a~~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                       ++|+..+..+.++|.++.++ |. ||++||+.
T Consensus       181 ~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~  213 (262)
T PRK09984        181 ASLDPESARIVMDTLRDINQNDGITVVVTLHQV  213 (262)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence             89999999999999999764 66 99999985

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.64  E-value=3.4e-16  Score=155.73  Aligned_cols=152  Identities=14%  Similarity=0.134  Sum_probs=98.3

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--------HHHHHHHHHHHhhhh---hcccchhhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--------MLKINEHMHRLWKNQ---VAEKSLRSSIS  108 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--------~~~~~~~i~~~~~~~---~~~~t~~e~l~  108 (454)
                      ..++.-++|+|+||||||||+++|+|.+++ ..|...+.....        .......++++.|..   ....|+.+++.
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~  108 (290)
T PRK13634         30 IPSGSYVAIIGHTGSGKSTLLQHLNGLLQP-TSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDIC  108 (290)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHH
Confidence            356788999999999999999999999874 234333322211        123344566666642   22357777763


Q ss_pred             ccccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882          109 GWITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA  176 (454)
Q Consensus       109 ~~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~  176 (454)
                      ........+.    ..+++++..+++...     ........+++++       ++|+.+|++|+||||+ +||+..+..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~  183 (290)
T PRK13634        109 FGPMNFGVSEEDAKQKAREMIELVGLPEE-----LLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKE  183 (290)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHCCCChh-----hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence            2211111111    234555556665311     0111123344443       6888999999999999 899999999


Q ss_pred             HHHHHHHHHhC-Cc-EEEEecCC
Q 012882          177 LSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       177 L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      +.++|.++.++ |. ||++||+.
T Consensus       184 l~~~L~~l~~~~g~tviiitHd~  206 (290)
T PRK13634        184 MMEMFYKLHKEKGLTTVLVTHSM  206 (290)
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCH
Confidence            99999999764 76 99999985

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.64  E-value=3.3e-16  Score=155.04  Aligned_cols=152  Identities=11%  Similarity=0.082  Sum_probs=97.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-----HHHHHHHHHHHhhhh---hcccchhhhhhccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-----MLKINEHMHRLWKNQ---VAEKSLRSSISGWI  111 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-----~~~~~~~i~~~~~~~---~~~~t~~e~l~~~~  111 (454)
                      ..+++-++|+|+||||||||+++|+|.+++ ..|...+.....     .....+.++++.+..   ....++.+++....
T Consensus        33 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~  111 (280)
T PRK13633         33 VKKGEFLVILGRNGSGKSTIAKHMNALLIP-SEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGP  111 (280)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhH
Confidence            346778999999999999999999999874 244444332221     122344556665542   12235555552111


Q ss_pred             c--CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          112 T--NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       112 ~--~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                      .  .....  ...++.++..+++...      .......+++++       ++|+.+|++||||||+ ++|+.++..+.+
T Consensus       112 ~~~~~~~~~~~~~~~~~l~~~gL~~~------~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~  185 (280)
T PRK13633        112 ENLGIPPEEIRERVDESLKKVGMYEY------RRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVN  185 (280)
T ss_pred             hhcCCCHHHHHHHHHHHHHHCCCHhH------hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence            1  11111  1334555555555321      112234445444       6888999999999999 899999999999


Q ss_pred             HHHHHHh-CCc-EEEEecCCC
Q 012882          180 IVSRLLS-TGT-VLVATSNRA  198 (454)
Q Consensus       180 ll~~L~~-~G~-vlV~ThN~~  198 (454)
                      +|.++.+ .|. ||++||+..
T Consensus       186 ~l~~l~~~~g~tillvtH~~~  206 (280)
T PRK13633        186 TIKELNKKYGITIILITHYME  206 (280)
T ss_pred             HHHHHHHhcCCEEEEEecChH
Confidence            9999976 476 899999864

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.64  E-value=3e-16  Score=161.20  Aligned_cols=148  Identities=16%  Similarity=0.151  Sum_probs=99.9

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhcccc--
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWIT--  112 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~--  112 (454)
                      ..+.-++|+||||||||||+++|+|..++. .  +.+.+++..    ....+.++++.|.  ..+.+|+.+++.....  
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~-~--G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~  103 (369)
T PRK11000         27 HEGEFVVFVGPSGCGKSTLLRMIAGLEDIT-S--GDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA  103 (369)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCCCC-c--eEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc
Confidence            456779999999999999999999998642 3  444443211    1112345666665  4456788888732221  


Q ss_pred             CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882          113 NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS  182 (454)
Q Consensus       113 ~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~  182 (454)
                      .....  ...+++++..+++...      .......|++++       +||+.+|+||+||||+ +||+..+..+.++|.
T Consensus       104 ~~~~~~~~~~~~~~l~~lgL~~~------~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~  177 (369)
T PRK11000        104 GAKKEEINQRVNQVAEVLQLAHL------LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEIS  177 (369)
T ss_pred             CCCHHHHHHHHHHHHHHcCChhh------hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            11111  1344555666555321      122334566554       7889999999999999 899999999999999


Q ss_pred             HHHhC-Cc-EEEEecCC
Q 012882          183 RLLST-GT-VLVATSNR  197 (454)
Q Consensus       183 ~L~~~-G~-vlV~ThN~  197 (454)
                      ++.++ |. +|++||+.
T Consensus       178 ~l~~~~g~tvI~vTHd~  194 (369)
T PRK11000        178 RLHKRLGRTMIYVTHDQ  194 (369)
T ss_pred             HHHHHhCCEEEEEeCCH
Confidence            99764 66 99999984

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.64  E-value=3.5e-16  Score=150.40  Aligned_cols=148  Identities=14%  Similarity=0.138  Sum_probs=94.7

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-HHHHHHHHHHhhh--hhcccchhhhhhccccC--CC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-LKINEHMHRLWKN--QVAEKSLRSSISGWITN--LP  115 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~--~~  115 (454)
                      .++.-++|+|+||||||||+++|+|.+++ ..|  .+.+++.. ........++.|.  .....|+.+++......  ..
T Consensus         9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G--~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~   85 (230)
T TIGR01184         9 QQGEFISLIGHSGCGKSTLLNLISGLAQP-TSG--GVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPD   85 (230)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCc--eEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccC
Confidence            45677999999999999999999999874 233  44443210 0011112344444  33446777776322110  01


Q ss_pred             CCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHH
Q 012882          116 FDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSR  183 (454)
Q Consensus       116 ~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~  183 (454)
                      .+.    ..++.++..+++...      .......+++++       ++|+.+|++|+||||+ ++|+..+..+.++|.+
T Consensus        86 ~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~  159 (230)
T TIGR01184        86 LSKSERRAIVEEHIALVGLTEA------ADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQ  159 (230)
T ss_pred             CCHHHHHHHHHHHHHHcCCHHH------HcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence            111    233455555555321      122234455554       6888999999999999 8999999999999999


Q ss_pred             HHhC-Cc-EEEEecCC
Q 012882          184 LLST-GT-VLVATSNR  197 (454)
Q Consensus       184 L~~~-G~-vlV~ThN~  197 (454)
                      +.++ |. +|++||+.
T Consensus       160 ~~~~~~~tii~~sH~~  175 (230)
T TIGR01184       160 IWEEHRVTVLMVTHDV  175 (230)
T ss_pred             HHHhcCCEEEEEeCCH
Confidence            8764 66 88999974

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.63  E-value=8.4e-16  Score=152.09  Aligned_cols=149  Identities=13%  Similarity=0.118  Sum_probs=100.4

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh---hcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ---VAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~---~~~~t~~e~l~~~  110 (454)
                      ..+++-++|+|+||||||||+++|+|.+++. .|  .+.+.+.      .....+.++++.|..   ....|+.+++...
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G--~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~  106 (279)
T PRK13650         30 VKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE-SG--QIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFG  106 (279)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhcCCCCC-Cc--EEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhh
Confidence            3567889999999999999999999998742 33  4444332      123445566666642   3446777777322


Q ss_pred             ccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          111 ITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       111 ~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                      ......+.    ..++.++..+++...      .......+++++       +||+.+|+||+||||+ ++|+.++..+.
T Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~gL~~~------~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~  180 (279)
T PRK13650        107 LENKGIPHEEMKERVNEALELVGMQDF------KEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELI  180 (279)
T ss_pred             HHhCCCCHHHHHHHHHHHHHHCCCHhH------hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH
Confidence            11111111    344555666665321      112223445444       6889999999999999 89999999999


Q ss_pred             HHHHHHHhC-Cc-EEEEecCC
Q 012882          179 GIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       179 ~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      ++|..+.++ |. ||++||+.
T Consensus       181 ~~l~~l~~~~g~tilivtH~~  201 (279)
T PRK13650        181 KTIKGIRDDYQMTVISITHDL  201 (279)
T ss_pred             HHHHHHHHhcCCEEEEEecCH
Confidence            999999864 76 89999985

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.63  E-value=5.5e-16  Score=152.69  Aligned_cols=149  Identities=16%  Similarity=0.153  Sum_probs=93.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH--------HHHHHHHHHHhhhh---hcccchhhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM--------LKINEHMHRLWKNQ---VAEKSLRSSIS  108 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~--------~~~~~~i~~~~~~~---~~~~t~~e~l~  108 (454)
                      ..+++-++|+|+||||||||+++|+|.+++. .  +.+.+.+..        ......++++.|..   ....++.+++.
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~--G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~  100 (271)
T PRK13638         24 FSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ-K--GAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIA  100 (271)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHcCCCCCC-c--cEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHH
Confidence            3466779999999999999999999998742 3  344443211        12334556665542   12234555542


Q ss_pred             ccccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882          109 GWITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA  176 (454)
Q Consensus       109 ~~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~  176 (454)
                      ..........    ...+.++..+++....      ......+++++       ++|+.+|+||+||||+ ++|+..+..
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~  174 (271)
T PRK13638        101 FSLRNLGVPEAEITRRVDEALTLVDAQHFR------HQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQ  174 (271)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCCHhHh------cCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence            1111111111    2233444444442211      11233445444       6888999999999999 899999999


Q ss_pred             HHHHHHHHHhCCc-EEEEecCC
Q 012882          177 LSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       177 L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      +.++|.++.++|. ||++||+.
T Consensus       175 l~~~l~~~~~~g~tii~vtH~~  196 (271)
T PRK13638        175 MIAIIRRIVAQGNHVIISSHDI  196 (271)
T ss_pred             HHHHHHHHHHCCCEEEEEeCCH
Confidence            9999999987776 88999984

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.63  E-value=3.7e-16  Score=153.74  Aligned_cols=149  Identities=15%  Similarity=0.186  Sum_probs=95.9

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--H-------HHHHHHHHHHhhh--hhcccchhhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--M-------LKINEHMHRLWKN--QVAEKSLRSSIS  108 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--~-------~~~~~~i~~~~~~--~~~~~t~~e~l~  108 (454)
                      ..++.-++|+|+||||||||+++|+|..++ ..|  .+.+++.  .       ......+.++.+.  .....|+.+++.
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G--~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~  106 (269)
T PRK11831         30 VPRGKITAIMGPSGIGKTTLLRLIGGQIAP-DHG--EILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVA  106 (269)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCc--eEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHH
Confidence            356778999999999999999999999874 233  4443321  0       1123345555554  334457777763


Q ss_pred             ccccCC-CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          109 GWITNL-PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       109 ~~~~~~-~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      ...... ..+.    ..+..++..+++...      .......+++++       ++|+.+|++|+||||+ +||+..+.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~------~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~  180 (269)
T PRK11831        107 YPLREHTQLPAPLLHSTVMMKLEAVGLRGA------AKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMG  180 (269)
T ss_pred             HHHHHccCCCHHHHHHHHHHHHHHcCChhh------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence            211111 1111    223344454444321      122234455554       6888999999999999 89999999


Q ss_pred             HHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          176 ALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       176 ~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      .+.++|.++.++ |. +|++||+.
T Consensus       181 ~l~~~l~~~~~~~g~tiiivsH~~  204 (269)
T PRK11831        181 VLVKLISELNSALGVTCVVVSHDV  204 (269)
T ss_pred             HHHHHHHHHHHhcCcEEEEEecCH
Confidence            999999999764 66 89999984

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.63  E-value=3e-16  Score=154.46  Aligned_cols=150  Identities=12%  Similarity=0.108  Sum_probs=96.1

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HHH----HHHHHHHhhh--hhcccchhhh
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LKI----NEHMHRLWKN--QVAEKSLRSS  106 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~~----~~~i~~~~~~--~~~~~t~~e~  106 (454)
                      ...+++-++|+||||||||||+++|+|.+++. .  +.+.+++..      ...    ...+.++.+.  .....|+.++
T Consensus        46 ~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~-~--G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~  122 (269)
T cd03294          46 DVREGEIFVIMGLSGSGKSTLLRCINRLIEPT-S--GKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLEN  122 (269)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-C--eEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHH
Confidence            34567889999999999999999999998742 3  344443311      011    1234555554  3344677777


Q ss_pred             hhccc--cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882          107 ISGWI--TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI  174 (454)
Q Consensus       107 l~~~~--~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a  174 (454)
                      +....  ......  ...+++++..+++...      +......+++++       +||+.+|+|||||||+ ++|+..+
T Consensus       123 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~  196 (269)
T cd03294         123 VAFGLEVQGVPRAEREERAAEALELVGLEGW------EHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIR  196 (269)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHcCCHhH------hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence            63211  111111  1233445555554321      122233455554       6888999999999999 8999999


Q ss_pred             HHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          175 VALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       175 ~~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      ..+.++|.++.+. |. +|++||+.
T Consensus       197 ~~l~~~l~~~~~~~g~tiii~tH~~  221 (269)
T cd03294         197 REMQDELLRLQAELQKTIVFITHDL  221 (269)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            9999999999754 66 88999974

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.63  E-value=6.8e-16  Score=146.75  Aligned_cols=151  Identities=17%  Similarity=0.085  Sum_probs=95.1

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---HHHHHHHHHHhhh--hhcccchhhhhhccccC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---LKINEHMHRLWKN--QVAEKSLRSSISGWITN  113 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~  113 (454)
                      ...+++-++|+|+||||||||+++|+|..++. .  +.+.+++..   ......+.++.+.  .....|+.+++......
T Consensus        33 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~-~--G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~  109 (214)
T PRK13543         33 HVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE-S--GQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGL  109 (214)
T ss_pred             EECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC-C--eeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHh
Confidence            34567889999999999999999999998742 3  445444311   0112234444443  23334666665221110


Q ss_pred             -CCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHH
Q 012882          114 -LPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRL  184 (454)
Q Consensus       114 -~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L  184 (454)
                       ........+.++..+++...      .......+++++       ++++.+|++|+||||+ ++|+..+..+.+++..+
T Consensus       110 ~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  183 (214)
T PRK13543        110 HGRRAKQMPGSALAIVGLAGY------EDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAH  183 (214)
T ss_pred             cCCcHHHHHHHHHHHcCChhh------ccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence             01112233444554544221      111223444443       6888999999999999 89999999999999998


Q ss_pred             HhCCc-EEEEecCCC
Q 012882          185 LSTGT-VLVATSNRA  198 (454)
Q Consensus       185 ~~~G~-vlV~ThN~~  198 (454)
                      .++|. +|++||+..
T Consensus       184 ~~~~~tiii~sH~~~  198 (214)
T PRK13543        184 LRGGGAALVTTHGAY  198 (214)
T ss_pred             HhCCCEEEEEecChh
Confidence            87776 899999853

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.63  E-value=3.6e-16  Score=148.09  Aligned_cols=149  Identities=14%  Similarity=0.117  Sum_probs=101.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-------HHHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-------MLKINEHMHRLWKN--QVAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-------~~~~~~~i~~~~~~--~~~~~t~~e~l~~~  110 (454)
                      ...++-++|+||||+|||||+++++|.++|   ..++|.|..-       ..-.+..+....|.  .+.++|+.||+.-.
T Consensus        27 v~~Gei~~LIGPNGAGKTTlfNlitG~~~P---~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va  103 (250)
T COG0411          27 VRPGEIVGLIGPNGAGKTTLFNLITGFYKP---SSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVG  103 (250)
T ss_pred             EcCCeEEEEECCCCCCceeeeeeecccccC---CCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHH
Confidence            356778999999999999999999999975   3456666543       11222233333333  57788999987221


Q ss_pred             cc------CC----CC--Ch----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC
Q 012882          111 IT------NL----PF--DS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ  167 (454)
Q Consensus       111 ~~------~~----~~--~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~  167 (454)
                      ..      ..    .+  .+    +.+..+++..++..      .....|..++.++       +||+.+|+|||||||.
T Consensus       104 ~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~------~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPa  177 (250)
T COG0411         104 AHARLGLSGLLGRPRARKEEREARERARELLEFVGLGE------LADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPA  177 (250)
T ss_pred             hhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCch------hhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCcc
Confidence            11      11    01  11    34445555555533      2233444444443       6888999999999999


Q ss_pred             -CCCHHHHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          168 -TVDVFAIVALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       168 -~lD~~~a~~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                       ++.+.....+.++++++.+. |+ ++++-||.
T Consensus       178 AGln~~e~~~l~~~i~~i~~~~g~tillIEHdM  210 (250)
T COG0411         178 AGLNPEETEELAELIRELRDRGGVTILLIEHDM  210 (250)
T ss_pred             CCCCHHHHHHHHHHHHHHHhcCCcEEEEEEecc
Confidence             99999999999999999985 56 99999996

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.63  E-value=3.5e-16  Score=167.31  Aligned_cols=150  Identities=17%  Similarity=0.137  Sum_probs=99.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--H----HHHH-HHHHHHhhh--hhcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--M----LKIN-EHMHRLWKN--QVAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--~----~~~~-~~i~~~~~~--~~~~~t~~e~l~~~  110 (454)
                      ..+++-++|+||||||||||+++|+|.+++. .  +.+.+++.  .    .... ..++++.|.  ....+|+.+++...
T Consensus        34 i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~-~--G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~  110 (510)
T PRK15439         34 LHAGEVHALLGGNGAGKSTLMKIIAGIVPPD-S--GTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFG  110 (510)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-c--eEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcc
Confidence            3456779999999999999999999998742 3  34444321  0    1111 224455554  34556777776332


Q ss_pred             ccCCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882          111 ITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS  182 (454)
Q Consensus       111 ~~~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~  182 (454)
                      ..........+++++..+++..      ........+++++       +||+.+|+||+||||+ ++|+..+..+.++|.
T Consensus       111 ~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~  184 (510)
T PRK15439        111 LPKRQASMQKMKQLLAALGCQL------DLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIR  184 (510)
T ss_pred             cccchHHHHHHHHHHHHcCCCc------cccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence            2111111134455555555522      1223345566655       6889999999999999 899999999999999


Q ss_pred             HHHhCCc-EEEEecCCC
Q 012882          183 RLLSTGT-VLVATSNRA  198 (454)
Q Consensus       183 ~L~~~G~-vlV~ThN~~  198 (454)
                      ++.++|. ||++||+..
T Consensus       185 ~~~~~g~tiiivtHd~~  201 (510)
T PRK15439        185 ELLAQGVGIVFISHKLP  201 (510)
T ss_pred             HHHHCCCEEEEEeCCHH
Confidence            9988777 999999854

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.63  E-value=6.6e-16  Score=150.69  Aligned_cols=151  Identities=13%  Similarity=0.089  Sum_probs=96.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhccccC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWITN  113 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~  113 (454)
                      ..++.-++|+|+||||||||+++|+|.+++ ..|...+......    ......+.++.++  .....++.+++......
T Consensus        25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~  103 (255)
T PRK11231         25 LPTGKITALIGPNGCGKSTLLKCFARLLTP-QSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSP  103 (255)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCcCC-CCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccch
Confidence            346777999999999999999999998864 2343333222111    1233445666655  23345777766321100


Q ss_pred             ----CC--CC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882          114 ----LP--FD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL  177 (454)
Q Consensus       114 ----~~--~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L  177 (454)
                          ..  ..  ...++.++..+++....      ......+++++       +|++.+|++|+||||+ ++|+..+..+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l  177 (255)
T PRK11231        104 WLSLWGRLSAEDNARVNQAMEQTRINHLA------DRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVEL  177 (255)
T ss_pred             hhhhccCCCHHHHHHHHHHHHHcCCHHHH------cCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence                01  01  12344555555553211      11223344443       6888999999999999 8999999999


Q ss_pred             HHHHHHHHhCCc-EEEEecCC
Q 012882          178 SGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       178 ~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      .++|.++.++|. +|++||+.
T Consensus       178 ~~~l~~l~~~~~tiii~tH~~  198 (255)
T PRK11231        178 MRLMRELNTQGKTVVTVLHDL  198 (255)
T ss_pred             HHHHHHHHHCCCEEEEEECCH
Confidence            999999987776 89999974

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.63  E-value=6.4e-16  Score=153.48  Aligned_cols=150  Identities=11%  Similarity=0.148  Sum_probs=97.7

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----------HHHHHHHHHHHhhhh---hcccchhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----------MLKINEHMHRLWKNQ---VAEKSLRSS  106 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----------~~~~~~~i~~~~~~~---~~~~t~~e~  106 (454)
                      ..++.-++|+|+||||||||+++|+|.+++. .|  .+.+++.          ...+...++++.|..   ....|+.++
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~-~G--~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~  106 (286)
T PRK13646         30 FEQGKYYAIVGQTGSGKSTLIQNINALLKPT-TG--TVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVERE  106 (286)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-Cc--EEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHH
Confidence            3467789999999999999999999998742 34  4444321          123455667776642   122377777


Q ss_pred             hhccccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882          107 ISGWITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI  174 (454)
Q Consensus       107 l~~~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a  174 (454)
                      +.........+.    ..++.++..+++..     +........+++++       +||+.+|+||+||||+ ++|+.++
T Consensus       107 i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~  181 (286)
T PRK13646        107 IIFGPKNFKMNLDEVKNYAHRLLMDLGFSR-----DVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSK  181 (286)
T ss_pred             HHhhHHHcCCCHHHHHHHHHHHHHHcCCCh-----hhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHH
Confidence            632211111111    23445555555521     01111223344443       6888999999999999 8999999


Q ss_pred             HHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          175 VALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       175 ~~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      ..+.++|.++.++ |. ||++||+.
T Consensus       182 ~~l~~~l~~l~~~~g~tvl~vtH~~  206 (286)
T PRK13646        182 RQVMRLLKSLQTDENKTIILVSHDM  206 (286)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEecCH
Confidence            9999999999764 76 99999985

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.63  E-value=5.8e-16  Score=152.05  Aligned_cols=150  Identities=18%  Similarity=0.148  Sum_probs=98.1

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LKINEHMHRLWKN--QVAEKSLRSSISGW  110 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~~~~~i~~~~~~--~~~~~t~~e~l~~~  110 (454)
                      ...++.-++|+|+||||||||+++|+|..++ ..|  .+.+++.-      ....+.+.++.+.  ....+++.+++...
T Consensus        33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G--~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~  109 (265)
T PRK10575         33 TFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP-SEG--EILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIG  109 (265)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CCC--EEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhC
Confidence            3456788999999999999999999999874 234  44443211      1223445666554  23456777776322


Q ss_pred             ccCC-----CCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882          111 ITNL-----PFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI  174 (454)
Q Consensus       111 ~~~~-----~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a  174 (454)
                      ....     ...   ...++.++..+++...      +......+++++       +||+.+|+||+||||+ ++|+.++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~  183 (265)
T PRK10575        110 RYPWHGALGRFGAADREKVEEAISLVGLKPL------AHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQ  183 (265)
T ss_pred             cccccccccCCCHHHHHHHHHHHHHcCCHHH------hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence            1100     011   1234455555555321      112233455544       6888999999999999 8999999


Q ss_pred             HHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          175 VALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       175 ~~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      ..+.++|.++.+. |. +|++||+.
T Consensus       184 ~~~~~~l~~l~~~~~~tiii~sH~~  208 (265)
T PRK10575        184 VDVLALVHRLSQERGLTVIAVLHDI  208 (265)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            9999999999764 66 89999984

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.63  E-value=2.4e-16  Score=162.10  Aligned_cols=149  Identities=13%  Similarity=0.157  Sum_probs=99.2

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhcccc-
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWIT-  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~-  112 (454)
                      ...+.-++|+|||||||||||++|+|..++. .  +.+.+++..    ....+.++++.|.  .++.+|+.+|+..... 
T Consensus        42 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~-~--G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~  118 (377)
T PRK11607         42 IYKGEIFALLGASGCGKSTLLRMLAGFEQPT-A--GQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQ  118 (377)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-c--eEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHH
Confidence            3467789999999999999999999998742 3  344443211    1123345666655  5666788888732221 


Q ss_pred             -CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882          113 -NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV  181 (454)
Q Consensus       113 -~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll  181 (454)
                       .....  ...+++++..+++..      ........+++++       |||+.+|+||+||||+ +||...+..+.+.|
T Consensus       119 ~~~~~~~~~~~v~~~l~~l~L~~------~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l  192 (377)
T PRK11607        119 DKLPKAEIASRVNEMLGLVHMQE------FAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEV  192 (377)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCch------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence             11111  123344555555532      1222334555554       7899999999999999 89999999999999


Q ss_pred             HHHHh-CCc-EEEEecCC
Q 012882          182 SRLLS-TGT-VLVATSNR  197 (454)
Q Consensus       182 ~~L~~-~G~-vlV~ThN~  197 (454)
                      .++.+ .|. +|++||+.
T Consensus       193 ~~l~~~~g~tii~vTHd~  210 (377)
T PRK11607        193 VDILERVGVTCVMVTHDQ  210 (377)
T ss_pred             HHHHHhcCCEEEEEcCCH
Confidence            88865 476 89999985

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.62  E-value=8e-16  Score=150.49  Aligned_cols=149  Identities=11%  Similarity=0.058  Sum_probs=96.4

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh--hhcccchhhhhhccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN--QVAEKSLRSSISGWI  111 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~  111 (454)
                      ..++.-++|+|+||||||||+++|+|..++ ..|  .+.+++.      .......++++.+.  .....|+.+++....
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p-~~G--~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~  101 (258)
T PRK13548         25 LRPGEVVAILGPNGAGKSTLLRALSGELSP-DSG--EVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGR  101 (258)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCC--EEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhh
Confidence            346778999999999999999999999864 244  3433321      11223445566655  224567777763221


Q ss_pred             cCCCC--C--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhc------cCCcEEEeeCCC-CCCHHH
Q 012882          112 TNLPF--D--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQ------RGASILCFDEIQ-TVDVFA  173 (454)
Q Consensus       112 ~~~~~--~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~------~~p~lL~LDEp~-~lD~~~  173 (454)
                      .....  .  ...++.++..+++....      ......+++++       +||+      .+|++|+||||+ ++|+..
T Consensus       102 ~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~  175 (258)
T PRK13548        102 APHGLSRAEDDALVAAALAQVDLAHLA------GRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAH  175 (258)
T ss_pred             cccCCCcHHHHHHHHHHHHHcCCHhHh------cCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHH
Confidence            11111  1  12344555555553211      11223444443       5777      489999999999 899999


Q ss_pred             HHHHHHHHHHHH-hCCc-EEEEecCC
Q 012882          174 IVALSGIVSRLL-STGT-VLVATSNR  197 (454)
Q Consensus       174 a~~L~~ll~~L~-~~G~-vlV~ThN~  197 (454)
                      +..+.++|.++. ++|. ||++||+.
T Consensus       176 ~~~l~~~l~~~~~~~~~tiii~sH~~  201 (258)
T PRK13548        176 QHHVLRLARQLAHERGLAVIVVLHDL  201 (258)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEECCH
Confidence            999999999997 5676 88899874

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.62  E-value=6.5e-16  Score=142.70  Aligned_cols=128  Identities=20%  Similarity=0.211  Sum_probs=79.0

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH--------HHHHHHHHHHhhhhhcccchhhhhhccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM--------LKINEHMHRLWKNQVAEKSLRSSISGWI  111 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~--------~~~~~~i~~~~~~~~~~~t~~e~l~~~~  111 (454)
                      ..++.-++|.||||+|||||+++|+|.+++ ..  +.+.+++..        ......+.++.+.              .
T Consensus        23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~--G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~--------------~   85 (178)
T cd03229          23 IEAGEIVALLGPSGSGKSTLLRCIAGLEEP-DS--GSILIDGEDLTDLEDELPPLRRRIGMVFQD--------------F   85 (178)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-Cc--eEEEECCEEccccchhHHHHhhcEEEEecC--------------C
Confidence            346788999999999999999999999874 23  445443321        0111122222221              1


Q ss_pred             cCCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC-Cc
Q 012882          112 TNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST-GT  189 (454)
Q Consensus       112 ~~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~-G~  189 (454)
                      . .....+..+++...  +.+   -......++       +||+.+|++|+||||+ ++|+.++..+.+++.++.++ |.
T Consensus        86 ~-~~~~~t~~~~l~~~--lS~---G~~qr~~la-------~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~  152 (178)
T cd03229          86 A-LFPHLTVLENIALG--LSG---GQQQRVALA-------RALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGI  152 (178)
T ss_pred             c-cCCCCCHHHheeec--CCH---HHHHHHHHH-------HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence            1 11112333332111  100   000112233       4556899999999999 89999999999999999886 66


Q ss_pred             -EEEEecCC
Q 012882          190 -VLVATSNR  197 (454)
Q Consensus       190 -vlV~ThN~  197 (454)
                       +|++||+.
T Consensus       153 tiii~sH~~  161 (178)
T cd03229         153 TVVLVTHDL  161 (178)
T ss_pred             EEEEEeCCH
Confidence             88889884

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.62  E-value=7.1e-16  Score=151.94  Aligned_cols=149  Identities=15%  Similarity=0.182  Sum_probs=97.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh---hcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ---VAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~---~~~~t~~e~l~~~  110 (454)
                      ..++.-++|.||||||||||+++|+|..++ ..|  .+.+++.      .....+.++++.+..   ....|+.+++...
T Consensus        32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G--~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~  108 (271)
T PRK13632         32 INEGEYVAILGHNGSGKSTISKILTGLLKP-QSG--EIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFG  108 (271)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCc--eEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhH
Confidence            356778999999999999999999999874 233  4444321      112344566666542   3346777776322


Q ss_pred             ccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          111 ITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       111 ~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                      .....+..    ..+++++..+++...      +......+++++       +||+.+|+||+||||+ ++|+.++..+.
T Consensus       109 ~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~  182 (271)
T PRK13632        109 LENKKVPPKKMKDIIDDLAKKVGMEDY------LDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIK  182 (271)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCCHHH------hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence            11111121    234455555555321      112223444443       6888999999999999 89999999999


Q ss_pred             HHHHHHHhCC-c-EEEEecCC
Q 012882          179 GIVSRLLSTG-T-VLVATSNR  197 (454)
Q Consensus       179 ~ll~~L~~~G-~-vlV~ThN~  197 (454)
                      ++|.++.++| . +|++||+.
T Consensus       183 ~~l~~~~~~~~~tiii~sH~~  203 (271)
T PRK13632        183 KIMVDLRKTRKKTLISITHDM  203 (271)
T ss_pred             HHHHHHHHhcCcEEEEEEech
Confidence            9999997653 5 88899985

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.62  E-value=2.2e-15  Score=142.88  Aligned_cols=158  Identities=13%  Similarity=0.159  Sum_probs=106.0

Q ss_pred             ccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----H-HHHHHHHHHHhhhhh----cccch
Q 012882           33 VGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----M-LKINEHMHRLWKNQV----AEKSL  103 (454)
Q Consensus        33 ~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~-~~~~~~i~~~~~~~~----~~~t~  103 (454)
                      ++.-.+..+++.-..|+||||||||||++++++..++. .+...+..+.|    . .++++.|+.+..++.    ...++
T Consensus        47 L~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps-sg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v  125 (257)
T COG1119          47 LGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS-SGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETV  125 (257)
T ss_pred             ccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC-CCceeeeeeeccCCcchHHHHHHhCccCHHHHhhccccccc
Confidence            33334566778889999999999999999999998863 55555554433    2 578888888776532    23345


Q ss_pred             hhhhhccccC---CC---CCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC
Q 012882          104 RSSISGWITN---LP---FDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ  167 (454)
Q Consensus       104 ~e~l~~~~~~---~~---~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~  167 (454)
                      .+.+....+.   .+   .+.   ..+..+++.+++....      .+--..++.++       |||+.+|.+||||||+
T Consensus       126 ~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la------~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~  199 (257)
T COG1119         126 RDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLA------DRPFGSLSQGEQRRVLIARALVKDPELLILDEPA  199 (257)
T ss_pred             ceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhc------cCchhhcCHhHHHHHHHHHHHhcCCCEEEecCcc
Confidence            5555222111   11   222   3445556665553311      11112233332       7889999999999999


Q ss_pred             -CCCHHHHHHHHHHHHHHHhC--Cc-EEEEecCC
Q 012882          168 -TVDVFAIVALSGIVSRLLST--GT-VLVATSNR  197 (454)
Q Consensus       168 -~lD~~~a~~L~~ll~~L~~~--G~-vlV~ThN~  197 (454)
                       ++|...++.+.+.|.++...  +. +|++||+-
T Consensus       200 ~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~  233 (257)
T COG1119         200 QGLDLIAREQLLNRLEELAASPGAPALLFVTHHA  233 (257)
T ss_pred             ccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch
Confidence             99999999999999999865  55 99999973

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.62  E-value=6.4e-16  Score=150.47  Aligned_cols=149  Identities=13%  Similarity=0.172  Sum_probs=96.0

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-------------------HHHHHHHHHHhhh--hh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-------------------LKINEHMHRLWKN--QV   98 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-------------------~~~~~~i~~~~~~--~~   98 (454)
                      ..++.-++|+|+||||||||+++|+|..++. .  +.+.+.+..                   ....+.+.++.+.  ..
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~--G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~   99 (252)
T TIGR03005        23 VAAGEKVALIGPSGSGKSTILRILMTLEPID-E--GQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLF   99 (252)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-c--eEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccC
Confidence            4567889999999999999999999988642 3  344443210                   1223345555544  23


Q ss_pred             cccchhhhhhcc-c--cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCC
Q 012882           99 AEKSLRSSISGW-I--TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEI  166 (454)
Q Consensus        99 ~~~t~~e~l~~~-~--~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp  166 (454)
                      ...|+.+++... .  ......  ...+++++..+++..      ........+++++       +||+.+|++|+||||
T Consensus       100 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP  173 (252)
T TIGR03005       100 PHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLAD------KADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEV  173 (252)
T ss_pred             CCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh------HhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            445777766321 1  111111  123344455554422      1122334455554       688899999999999


Q ss_pred             C-CCCHHHHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          167 Q-TVDVFAIVALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       167 ~-~lD~~~a~~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      + ++|+.++..+.++|.++.++ |. +|++||+.
T Consensus       174 ~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~  207 (252)
T TIGR03005       174 TSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM  207 (252)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence            9 89999999999999999764 76 88999984

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.62  E-value=9.6e-16  Score=146.81  Aligned_cols=152  Identities=17%  Similarity=0.187  Sum_probs=93.3

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---HHHHHHHHHHHhhh--hhcccchhhhhhcc-c-c
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---MLKINEHMHRLWKN--QVAEKSLRSSISGW-I-T  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---~~~~~~~i~~~~~~--~~~~~t~~e~l~~~-~-~  112 (454)
                      ..+++-++|+||||||||||+++|+|.+++.....+.+.+.+.   .....+.++++.|.  ....+|+.+++... . .
T Consensus        30 i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~  109 (226)
T cd03234          30 VESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILR  109 (226)
T ss_pred             EcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhh
Confidence            4567889999999999999999999998610012334444321   11233445555554  33445777776211 1 1


Q ss_pred             CCCC-Ch----HHHHH-HHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          113 NLPF-DS----KVMEW-VAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       113 ~~~~-~~----~~~e~-ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                      .... ..    ...+. ++..+++..      ........+++++       ++|+.+|++||||||+ ++|+.++..+.
T Consensus       110 ~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~  183 (226)
T cd03234         110 LPRKSSDAIRKKRVEDVLLRDLALTR------IGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLV  183 (226)
T ss_pred             cccccchHHHHHHHHHHHHHhhcchh------hhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHH
Confidence            1000 00    11122 333333321      1111223344443       6888999999999999 89999999999


Q ss_pred             HHHHHHHhCCc-EEEEecCC
Q 012882          179 GIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       179 ~ll~~L~~~G~-vlV~ThN~  197 (454)
                      +++.++.++|. +|++||+.
T Consensus       184 ~~l~~~~~~~~tiii~sh~~  203 (226)
T cd03234         184 STLSQLARRNRIVILTIHQP  203 (226)
T ss_pred             HHHHHHHHCCCEEEEEecCC
Confidence            99999987776 88888874

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.62  E-value=6.9e-16  Score=151.47  Aligned_cols=149  Identities=13%  Similarity=0.129  Sum_probs=97.7

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HHHHHHHHHHhhh--hhcccchhhhhhccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LKINEHMHRLWKN--QVAEKSLRSSISGWI  111 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~~~~~i~~~~~~--~~~~~t~~e~l~~~~  111 (454)
                      ..++.-++|+||||||||||+++|+|.+++ ..  +.+.+++.-      ......+.++.+.  .....++.+++....
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~--G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~  106 (265)
T PRK10253         30 IPDGHFTAIIGPNGCGKSTLLRTLSRLMTP-AH--GHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGR  106 (265)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHcCCCCC-CC--cEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCc
Confidence            346778999999999999999999999874 23  445554321      1223456666665  233457777763211


Q ss_pred             -cC--C--CCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          112 -TN--L--PFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       112 -~~--~--~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                       ..  .  ...   ...++.++..+++...      .......+++++       +|++.+|++|+||||+ ++|+.++.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~  180 (265)
T PRK10253        107 YPHQPLFTRWRKEDEEAVTKAMQATGITHL------ADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQI  180 (265)
T ss_pred             ccccccccCCCHHHHHHHHHHHHHcCCHHH------hcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence             11  0  011   1234455555555321      111223344443       6888999999999999 89999999


Q ss_pred             HHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          176 ALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       176 ~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      .+.++|..+.++ |. +|++||+.
T Consensus       181 ~l~~~L~~l~~~~~~tiii~tH~~  204 (265)
T PRK10253        181 DLLELLSELNREKGYTLAAVLHDL  204 (265)
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCH
Confidence            999999999764 66 89999984

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.62  E-value=7.5e-16  Score=150.07  Aligned_cols=149  Identities=13%  Similarity=0.075  Sum_probs=94.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-------HHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-------LKINEHMHRLWKN--QVAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-------~~~~~~i~~~~~~--~~~~~t~~e~l~~~  110 (454)
                      ..+++-++|+|+||||||||+++|+|..++ ..|  .+.+.+..       ...+..+.++.+.  ....+|+.+++...
T Consensus        28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G--~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~  104 (255)
T PRK11300         28 VREQEIVSLIGPNGAGKTTVFNCLTGFYKP-TGG--TILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVA  104 (255)
T ss_pred             EcCCeEEEEECCCCCCHHHHHHHHhCCcCC-Ccc--eEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHh
Confidence            356788999999999999999999999874 233  44443211       1111223334444  34456777776321


Q ss_pred             cc---------CC------CCC----hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEee
Q 012882          111 IT---------NL------PFD----SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFD  164 (454)
Q Consensus       111 ~~---------~~------~~~----~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LD  164 (454)
                      ..         ..      ...    ...++.++..+++..      ....-...+++++       +||+.+|++|+||
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~------~~~~~~~~LS~G~~qrv~la~al~~~p~llllD  178 (255)
T PRK11300        105 QHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLE------HANRQAGNLAYGQQRRLEIARCMVTQPEILMLD  178 (255)
T ss_pred             hhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhh------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            10         00      000    022334444444422      1222234455554       6889999999999


Q ss_pred             CCC-CCCHHHHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          165 EIQ-TVDVFAIVALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       165 Ep~-~lD~~~a~~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      ||+ ++|+..+..+.++|.++.++ |+ ||++||+.
T Consensus       179 EPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~  214 (255)
T PRK11300        179 EPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM  214 (255)
T ss_pred             CCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH
Confidence            999 89999999999999999775 76 88889874

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.62  E-value=5.9e-16  Score=156.06  Aligned_cols=152  Identities=16%  Similarity=0.128  Sum_probs=96.2

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEech---h-----------------HHHHHHHHHHHhhhh--
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE---A-----------------MLKINEHMHRLWKNQ--   97 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~---f-----------------~~~~~~~i~~~~~~~--   97 (454)
                      ..+++-++|+|+||||||||+++|+|..++ ..|...+....   .                 ...+.+.++++.|..  
T Consensus        49 i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p-~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~  127 (320)
T PRK13631         49 FEKNKIYFIIGNSGSGKSTLVTHFNGLIKS-KYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEY  127 (320)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchh
Confidence            356778999999999999999999999874 24433332211   1                 122344455555542  


Q ss_pred             -hcccchhhhhhccccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeC
Q 012882           98 -VAEKSLRSSISGWITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDE  165 (454)
Q Consensus        98 -~~~~t~~e~l~~~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDE  165 (454)
                       ....|+.+++.........+.    ..++.++..+++..     .........+++++       +||+.+|++|+|||
T Consensus       128 ~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDE  202 (320)
T PRK13631        128 QLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD-----SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDE  202 (320)
T ss_pred             ccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh-----hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence             122366666632211111111    23344555555421     01111223344443       68889999999999


Q ss_pred             CC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          166 IQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       166 p~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      |+ +||+.++..+.++|.++.++|. ||++||+.
T Consensus       203 PtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~  236 (320)
T PRK13631        203 PTAGLDPKGEHEMMQLILDAKANNKTVFVITHTM  236 (320)
T ss_pred             CccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence            99 8999999999999999987776 88999984

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.62  E-value=7.6e-16  Score=141.61  Aligned_cols=125  Identities=17%  Similarity=0.137  Sum_probs=80.7

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH-----HHHHHHHHHhhhhhcccchhhhhhccccCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML-----KINEHMHRLWKNQVAEKSLRSSISGWITNLP  115 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~-----~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~  115 (454)
                      .+++-++|+|+||||||||+++|+|..++ .  .+.+.+++...     ..+..+.+              +++... ..
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~--~G~i~~~g~~~~~~~~~~~~~i~~--------------~~q~~~-~~   85 (173)
T cd03230          24 EKGEIYGLLGPNGAGKTTLIKIILGLLKP-D--SGEIKVLGKDIKKEPEEVKRRIGY--------------LPEEPS-LY   85 (173)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCC-C--CeEEEECCEEcccchHhhhccEEE--------------EecCCc-cc
Confidence            46778999999999999999999999864 2  34555543211     11111222              222211 11


Q ss_pred             CChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEE
Q 012882          116 FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVA  193 (454)
Q Consensus       116 ~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~  193 (454)
                      ...++.+++.    +.+   .......+|       +||+.+|++|++|||+ ++|+..+..+.++|.++.++|. +|++
T Consensus        86 ~~~tv~~~~~----LS~---G~~qrv~la-------ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~  151 (173)
T cd03230          86 ENLTVRENLK----LSG---GMKQRLALA-------QALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLS  151 (173)
T ss_pred             cCCcHHHHhh----cCH---HHHHHHHHH-------HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence            1224444442    111   001112233       4556899999999999 8999999999999999987776 8889


Q ss_pred             ecCC
Q 012882          194 TSNR  197 (454)
Q Consensus       194 ThN~  197 (454)
                      ||+.
T Consensus       152 th~~  155 (173)
T cd03230         152 SHIL  155 (173)
T ss_pred             CCCH
Confidence            9874

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.62  E-value=4.4e-16  Score=185.10  Aligned_cols=180  Identities=14%  Similarity=0.118  Sum_probs=123.0

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---HHHHHHHHHHHhhh--hhcccchhhhhh--cccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---MLKINEHMHRLWKN--QVAEKSLRSSIS--GWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---~~~~~~~i~~~~~~--~~~~~t~~e~l~--~~~~  112 (454)
                      ..+++-++|+|+||||||||+++|+|.+++. .|...+.....   ....++.+++++|.  ....+|+.+++.  ....
T Consensus      1962 I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt-sG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~ 2040 (2272)
T TIGR01257      1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVT-SGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR 2040 (2272)
T ss_pred             EcCCcEEEEECCCCCcHHHHHHHHhCCCCCC-ccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc
Confidence            3567789999999999999999999998752 44444433222   22345567777776  455678888872  2222


Q ss_pred             CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882          113 NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS  182 (454)
Q Consensus       113 ~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~  182 (454)
                      +.+..  ...+++++..+++...      ....++.+++++       +||+.+|+||+||||+ ++|+..+..++++|.
T Consensus      2041 g~~~~~~~~~v~~lLe~lgL~~~------~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~ 2114 (2272)
T TIGR01257      2041 GVPAEEIEKVANWSIQSLGLSLY------ADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIV 2114 (2272)
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHH------hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence            32221  1344556666666321      223345566665       6889999999999999 999999999999999


Q ss_pred             HHHhCCc-EEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCchhhhh
Q 012882          183 RLLSTGT-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRR  236 (454)
Q Consensus       183 ~L~~~G~-vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~DyR~  236 (454)
                      ++.++|+ ||++||+....+-+++++          .+..+++++..++..+.|.
T Consensus      2115 ~l~~~g~TIILtTH~mee~e~lcDrV----------~IL~~G~i~~~Gs~q~Lk~ 2159 (2272)
T TIGR01257      2115 SIIREGRAVVLTSHSMEECEALCTRL----------AIMVKGAFQCLGTIQHLKS 2159 (2272)
T ss_pred             HHHhCCCEEEEEeCCHHHHHHhCCEE----------EEEECCEEEEECCHHHHHH
Confidence            9987787 899999865555555542          2345566666666666554

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.62  E-value=1.2e-15  Score=145.81  Aligned_cols=150  Identities=13%  Similarity=0.123  Sum_probs=94.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEec--h----hH----HH---H-HHHHHHHhhh--hhcccch
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFH--E----AM----LK---I-NEHMHRLWKN--QVAEKSL  103 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~--~----f~----~~---~-~~~i~~~~~~--~~~~~t~  103 (454)
                      ..++.-++|+|+||||||||+++|+|.+++ ..|  .+.++  +    ..    ..   . ...+.++.+.  ....+++
T Consensus        31 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G--~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv  107 (224)
T TIGR02324        31 VNAGECVALSGPSGAGKSTLLKSLYANYLP-DSG--RILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSA  107 (224)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCC--eEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccH
Confidence            346788999999999999999999999874 233  44443  1    10    00   1 1234455544  2344566


Q ss_pred             hhhhhccc--cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCH
Q 012882          104 RSSISGWI--TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDV  171 (454)
Q Consensus       104 ~e~l~~~~--~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~  171 (454)
                      .+++....  ......  ...+..++..+++....     .......+++++       +||+.+|++|+||||+ ++|+
T Consensus       108 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~  182 (224)
T TIGR02324       108 LEVVAEPLLERGVPREAARARARELLARLNIPERL-----WHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDA  182 (224)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence            66652211  111111  12334444444442210     011223344443       6888999999999999 8999


Q ss_pred             HHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          172 FAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       172 ~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      .++..+.++|.++.++|. +|++||+.
T Consensus       183 ~~~~~l~~~l~~~~~~g~tii~vsH~~  209 (224)
T TIGR02324       183 ANRQVVVELIAEAKARGAALIGIFHDE  209 (224)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            999999999999987776 89999984

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.62  E-value=6.9e-16  Score=149.16  Aligned_cols=149  Identities=15%  Similarity=0.108  Sum_probs=95.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HH-HHHHHHHHhhh--hhcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LK-INEHMHRLWKN--QVAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~-~~~~i~~~~~~--~~~~~t~~e~l~~~  110 (454)
                      ..++.-++|+|+||||||||+++|+|.+++ ..|  .+.+.+..      .. ....++++.+.  ..+..|+.+++...
T Consensus        25 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-~~G--~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~  101 (242)
T TIGR03411        25 VDPGELRVIIGPNGAGKTTMMDVITGKTRP-DEG--SVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELA  101 (242)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCC--eEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHh
Confidence            356788999999999999999999999864 233  44443321      01 11235555554  34456777776321


Q ss_pred             ccC----------CCC--ChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCC
Q 012882          111 ITN----------LPF--DSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVD  170 (454)
Q Consensus       111 ~~~----------~~~--~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD  170 (454)
                      ...          ...  ....+++++..+++...      .......+++++       +|++.+|++|+||||+ ++|
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD  175 (242)
T TIGR03411       102 LPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADE------ADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMT  175 (242)
T ss_pred             hhcccccccccccccHHHHHHHHHHHHHHcCCchh------hcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCC
Confidence            110          000  11234455555554321      122233445444       6889999999999999 899


Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEecCC
Q 012882          171 VFAIVALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       171 ~~~a~~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      +.++..+.++|.++.+..++|++||+.
T Consensus       176 ~~~~~~l~~~l~~~~~~~tii~~sH~~  202 (242)
T TIGR03411       176 DEETEKTAELLKSLAGKHSVVVVEHDM  202 (242)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence            999999999999997633488889873

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.62  E-value=1.2e-15  Score=141.48  Aligned_cols=131  Identities=21%  Similarity=0.199  Sum_probs=81.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-------HHHHHHHHHHhhhhhcccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-------LKINEHMHRLWKNQVAEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-------~~~~~~i~~~~~~~~~~~t~~e~l~~~~~  112 (454)
                      ..++.-++|+|+||+|||||+++|+|..++. .  +.+.+++..       ......+.++              ++...
T Consensus        23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~--G~i~~~g~~~~~~~~~~~~~~~i~~~--------------~q~~~   85 (182)
T cd03215          23 VRAGEIVGIAGLVGNGQTELAEALFGLRPPA-S--GEITLDGKPVTRRSPRDAIRAGIAYV--------------PEDRK   85 (182)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-C--ceEEECCEECCccCHHHHHhCCeEEe--------------cCCcc
Confidence            3467789999999999999999999998742 3  344443311       0011112222              22211


Q ss_pred             --CCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc
Q 012882          113 --NLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT  189 (454)
Q Consensus       113 --~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~  189 (454)
                        ......+..+++.....+.+.   ......+|       +|++.+|++|+||||+ ++|+.++..+.+++.++.++|.
T Consensus        86 ~~~~~~~~t~~e~l~~~~~LS~G---~~qrl~la-------~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~  155 (182)
T cd03215          86 REGLVLDLSVAENIALSSLLSGG---NQQKVVLA-------RWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGK  155 (182)
T ss_pred             cCcccCCCcHHHHHHHHhhcCHH---HHHHHHHH-------HHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCC
Confidence              122223455554332111110   00112233       4566899999999999 8999999999999999977676


Q ss_pred             -EEEEecCC
Q 012882          190 -VLVATSNR  197 (454)
Q Consensus       190 -vlV~ThN~  197 (454)
                       +|++||+.
T Consensus       156 tiii~sh~~  164 (182)
T cd03215         156 AVLLISSEL  164 (182)
T ss_pred             EEEEEeCCH
Confidence             88888874

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.62  E-value=4.1e-16  Score=150.70  Aligned_cols=152  Identities=17%  Similarity=0.174  Sum_probs=92.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCC--CCcccCceEEEechhH----HH-HHHHHHHHhhh--hhcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGAT--EGIVKHRQRFHFHEAM----LK-INEHMHRLWKN--QVAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l--~~~~~~k~rv~f~~f~----~~-~~~~i~~~~~~--~~~~~t~~e~l~~~  110 (454)
                      ..++.-++|+||||||||||+++|+|..  ++ ..|...+......    .. ....+.++.|.  ..+..|+.+++...
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~  101 (243)
T TIGR01978        23 VKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV-TSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSA  101 (243)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-CcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHH
Confidence            3567789999999999999999999985  32 3343333222110    01 11224444444  33445666655211


Q ss_pred             c---cCC----CCC----hHHHHHHHHHHhhhhHHhhcchHHHHHH-Hhhhhh-------hhhccCCcEEEeeCCC-CCC
Q 012882          111 I---TNL----PFD----SKVMEWVAAEEKYKQEVQMKNILPAVAD-KFLVDQ-------HADQRGASILCFDEIQ-TVD  170 (454)
Q Consensus       111 ~---~~~----~~~----~~~~e~ll~~~~l~~~~~~~~~l~~va~-~l~~~~-------rAL~~~p~lL~LDEp~-~lD  170 (454)
                      .   ...    ..+    ....+.++..+++....     ...... .+++++       ++|+.+|++|+||||+ ++|
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD  176 (243)
T TIGR01978       102 LNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF-----LNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLD  176 (243)
T ss_pred             HHHhhcccccccccHHHHHHHHHHHHHHcCCchhh-----cccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCC
Confidence            1   000    011    12334445545542110     011111 244443       6888999999999999 899


Q ss_pred             HHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          171 VFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       171 ~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      +.++..+.++|.++.++|. ||++||+.
T Consensus       177 ~~~~~~l~~~l~~~~~~~~tvi~vsH~~  204 (243)
T TIGR01978       177 IDALKIVAEGINRLREPDRSFLIITHYQ  204 (243)
T ss_pred             HHHHHHHHHHHHHHHHCCcEEEEEEecH
Confidence            9999999999999987776 99999984

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.62  E-value=1.3e-15  Score=145.93  Aligned_cols=153  Identities=15%  Similarity=0.093  Sum_probs=95.1

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhhh-hcccchhhhhhcc--c
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKNQ-VAEKSLRSSISGW--I  111 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~~-~~~~t~~e~l~~~--~  111 (454)
                      ...+++-++|+||||||||||+++|+|..++ ..|...+......    ......+.++.+.. ....|+.+++...  .
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~  107 (225)
T PRK10247         29 SLRAGEFKLITGPSGCGKSTLLKIVASLISP-TSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQI  107 (225)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcccCC-CCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHHHhHHhh
Confidence            3456788999999999999999999998864 2443333222111    12334455555541 1123666665211  1


Q ss_pred             cCCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHH
Q 012882          112 TNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSR  183 (454)
Q Consensus       112 ~~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~  183 (454)
                      ..........+.++..+++...     ........+++++       ++|+.+|++|+||||+ ++|+..+..+.++|.+
T Consensus       108 ~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  182 (225)
T PRK10247        108 RNQQPDPAIFLDDLERFALPDT-----ILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHR  182 (225)
T ss_pred             cCCChHHHHHHHHHHHcCCChH-----HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            1111112334455555555211     0111122334333       6888999999999999 8999999999999999


Q ss_pred             HHhC-Cc-EEEEecCC
Q 012882          184 LLST-GT-VLVATSNR  197 (454)
Q Consensus       184 L~~~-G~-vlV~ThN~  197 (454)
                      +.++ |. +|++||+.
T Consensus       183 ~~~~~~~tvii~sh~~  198 (225)
T PRK10247        183 YVREQNIAVLWVTHDK  198 (225)
T ss_pred             HHHhcCCEEEEEECCh
Confidence            9764 66 89999985

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.62  E-value=8.7e-16  Score=149.90  Aligned_cols=149  Identities=17%  Similarity=0.149  Sum_probs=97.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh--hcccchhhhhhccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ--VAEKSLRSSISGWI  111 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~--~~~~t~~e~l~~~~  111 (454)
                      ..+++-++|+|+||+|||||+++|+|.+++ ..|  ++.+++.      .......+.++.++.  ....|+.+++....
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G--~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~  100 (256)
T TIGR03873        24 APPGSLTGLLGPNGSGKSTLLRLLAGALRP-DAG--TVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGR  100 (256)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHcCCCCC-CCC--EEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcc
Confidence            356788999999999999999999999874 233  4444321      112233456666652  34467777763221


Q ss_pred             -c--C---CCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          112 -T--N---LPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       112 -~--~---~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                       .  .   ....  ...+..++..+++...      .......+++++       +|++.+|++|+||||+ ++|+....
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~  174 (256)
T TIGR03873       101 IPHRSLWAGDSPHDAAVVDRALARTELSHL------ADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQL  174 (256)
T ss_pred             hhhhhhccCCCHHHHHHHHHHHHHcCcHhh------hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHH
Confidence             1  0   0111  1234445555554321      111122344443       6888999999999999 89999999


Q ss_pred             HHHHHHHHHHhCCc-EEEEecCC
Q 012882          176 ALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       176 ~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      .+.++|.++.++|. +|++||+.
T Consensus       175 ~l~~~l~~~~~~~~tiii~sH~~  197 (256)
T TIGR03873       175 ETLALVRELAATGVTVVAALHDL  197 (256)
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCH
Confidence            99999999987776 88888874

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.61  E-value=1.6e-15  Score=150.23  Aligned_cols=152  Identities=15%  Similarity=0.159  Sum_probs=99.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccC-ceEEEechh------HHHHHHHHHHHhhhh---hcccchhhhhhc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKH-RQRFHFHEA------MLKINEHMHRLWKNQ---VAEKSLRSSISG  109 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~-k~rv~f~~f------~~~~~~~i~~~~~~~---~~~~t~~e~l~~  109 (454)
                      .+++.-++|+||||||||||+++|+|.+++. .+ .+.+.+++.      .......++++.|..   ....|+.+++..
T Consensus        30 i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~-~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~  108 (282)
T PRK13640         30 IPRGSWTALIGHNGSGKSTISKLINGLLLPD-DNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAF  108 (282)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcccCCC-CCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHh
Confidence            3466779999999999999999999998642 21 134444331      112334556665542   345677777732


Q ss_pred             cccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882          110 WITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL  177 (454)
Q Consensus       110 ~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L  177 (454)
                      .........    ..++.++..+++...      .......+++++       +||+.+|+||+||||+ ++|+..+..+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~------~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l  182 (282)
T PRK13640        109 GLENRAVPRPEMIKIVRDVLADVGMLDY------IDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQI  182 (282)
T ss_pred             hHHhCCCCHHHHHHHHHHHHHHCCChhH------hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence            211111122    234455555555321      112223444443       6888999999999999 8999999999


Q ss_pred             HHHHHHHHhC-Cc-EEEEecCCC
Q 012882          178 SGIVSRLLST-GT-VLVATSNRA  198 (454)
Q Consensus       178 ~~ll~~L~~~-G~-vlV~ThN~~  198 (454)
                      .++|..+.+. |. ||++||+..
T Consensus       183 ~~~l~~l~~~~g~tvli~tH~~~  205 (282)
T PRK13640        183 LKLIRKLKKKNNLTVISITHDID  205 (282)
T ss_pred             HHHHHHHHHhcCCEEEEEecCHH
Confidence            9999999764 76 999999853

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.61  E-value=2.3e-15  Score=143.59  Aligned_cols=151  Identities=14%  Similarity=0.129  Sum_probs=97.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-------HHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-------LKINEHMHRLWKN--QVAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-------~~~~~~i~~~~~~--~~~~~t~~e~l~~~  110 (454)
                      ...++-++|+|+||||||||+++|+|..++ ..|...+......       ....+.+.++.+.  .....|+.+++...
T Consensus        28 i~~G~~~~I~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~  106 (220)
T TIGR02982        28 INPGEIVILTGPSGSGKTTLLTLIGGLRSV-QEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMA  106 (220)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHH
Confidence            346788999999999999999999999874 2333333222111       1223445555554  33446777766221


Q ss_pred             ccCC-CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882          111 ITNL-PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL  177 (454)
Q Consensus       111 ~~~~-~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L  177 (454)
                      .... ....    ..+++++..+++..      ........+++++       ++++.+|++|+||||+ ++|+..++.+
T Consensus       107 ~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l  180 (220)
T TIGR02982       107 LELQPNLSYQEARERARAMLEAVGLGD------HLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDV  180 (220)
T ss_pred             HHhccCCCHHHHHHHHHHHHHHcCChh------hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHH
Confidence            1110 1111    23445555555532      1222334455544       6889999999999999 8999999999


Q ss_pred             HHHHHHHHh-CCc-EEEEecCC
Q 012882          178 SGIVSRLLS-TGT-VLVATSNR  197 (454)
Q Consensus       178 ~~ll~~L~~-~G~-vlV~ThN~  197 (454)
                      .++|.++.+ .|+ +|++||+.
T Consensus       181 ~~~l~~~~~~~~~tii~~sh~~  202 (220)
T TIGR02982       181 VELMQKLAREQGCTILIVTHDN  202 (220)
T ss_pred             HHHHHHHHHHcCCEEEEEeCCH
Confidence            999999876 466 88888874

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.61  E-value=7.4e-16  Score=153.18  Aligned_cols=151  Identities=13%  Similarity=0.110  Sum_probs=93.4

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---------HHHHHHHHHHHhhhh---hcccchhhhhh
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---------MLKINEHMHRLWKNQ---VAEKSLRSSIS  108 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---------~~~~~~~i~~~~~~~---~~~~t~~e~l~  108 (454)
                      .++.-++|+|+||||||||+++|+|.+++ ..|...+.....         .......++++.+..   ....|+.+++.
T Consensus        35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~  113 (289)
T PRK13645         35 KKNKVTCVIGTTGSGKSTMIQLTNGLIIS-ETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIA  113 (289)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHH
Confidence            46778999999999999999999999874 234333322111         112233455555542   11236666662


Q ss_pred             ccccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882          109 GWITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA  176 (454)
Q Consensus       109 ~~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~  176 (454)
                      ..........    ..++.++..+++..     .........+++++       +||+.+|+||+||||+ ++|+.++..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~ll~~~~L~~-----~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~  188 (289)
T PRK13645        114 FGPVNLGENKQEAYKKVPELLKLVQLPE-----DYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEED  188 (289)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCCCh-----hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHH
Confidence            2111111111    22334444444411     01112234455554       6889999999999999 899999999


Q ss_pred             HHHHHHHHHhC-Cc-EEEEecCC
Q 012882          177 LSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       177 L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      +.++|.++.+. |+ ||++||+.
T Consensus       189 l~~~l~~~~~~~~~tiiiisH~~  211 (289)
T PRK13645        189 FINLFERLNKEYKKRIIMVTHNM  211 (289)
T ss_pred             HHHHHHHHHHhcCCEEEEEecCH
Confidence            99999999764 76 88889874

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.61  E-value=8.6e-16  Score=158.86  Aligned_cols=149  Identities=9%  Similarity=0.116  Sum_probs=99.2

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--H----HHH----HHHHHHHhhh--hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--M----LKI----NEHMHRLWKN--QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--~----~~~----~~~i~~~~~~--~~~~~t~~e~l  107 (454)
                      ...+.-++|+||||||||||+++|+|.+++. .|  .+.+++.  .    ...    ++.++++.|.  ..+.+|+.+++
T Consensus        51 i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~-sG--~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl  127 (400)
T PRK10070         51 IEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT-RG--QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNT  127 (400)
T ss_pred             EcCCCEEEEECCCCchHHHHHHHHHcCCCCC-CC--EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHH
Confidence            4567779999999999999999999998742 34  4444321  1    011    1245566655  34556788777


Q ss_pred             hccc--cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          108 SGWI--TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       108 ~~~~--~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      ....  ......  ...+++++..+++..      ........+++++       +||+.+|++|+||||+ +||+..+.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~e~L~~~gL~~------~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~  201 (400)
T PRK10070        128 AFGMELAGINAEERREKALDALRQVGLEN------YAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRT  201 (400)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHcCCCh------hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHH
Confidence            3221  111111  123445555555532      1223334556554       6899999999999999 89999999


Q ss_pred             HHHHHHHHHHh-CCc-EEEEecCC
Q 012882          176 ALSGIVSRLLS-TGT-VLVATSNR  197 (454)
Q Consensus       176 ~L~~ll~~L~~-~G~-vlV~ThN~  197 (454)
                      .+.++|.++.+ .|+ +|++||+.
T Consensus       202 ~l~~~L~~l~~~~g~TIIivTHd~  225 (400)
T PRK10070        202 EMQDELVKLQAKHQRTIVFISHDL  225 (400)
T ss_pred             HHHHHHHHHHHHCCCeEEEEECCH
Confidence            99999999975 466 89999985

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.61  E-value=2.7e-15  Score=144.43  Aligned_cols=151  Identities=17%  Similarity=0.194  Sum_probs=90.4

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-----HHHHHHHHHHHhhh---hhcccchhhhhhccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-----MLKINEHMHRLWKN---QVAEKSLRSSISGWI  111 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-----~~~~~~~i~~~~~~---~~~~~t~~e~l~~~~  111 (454)
                      ...++.++|+|+||||||||++++.|.+++. .+...+.....     ...+.+.++++.|.   +.-..|+.+.+...+
T Consensus        27 i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~-~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~  105 (235)
T COG1122          27 IEKGERVLLIGPNGSGKSTLLKLLNGLLKPT-SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGL  105 (235)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHcCcCcCC-CCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhch
Confidence            3456789999999999999999999999753 44443322111     22233333333332   111223333332222


Q ss_pred             cCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          112 TNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       112 ~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                      .....+.    .++++.+...++...      ..+-...|++++       .+|+.+|++|+||||| +||+..+..+.+
T Consensus       106 ~n~g~~~~e~~~rv~~~l~~vgl~~~------~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~  179 (235)
T COG1122         106 ENLGLPREEIEERVAEALELVGLEEL------LDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLE  179 (235)
T ss_pred             hhcCCCHHHHHHHHHHHHHHcCchhh------ccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHH
Confidence            2222221    223333333333221      111122334333       3677999999999999 899999999999


Q ss_pred             HHHHHHhC-Cc-EEEEecCC
Q 012882          180 IVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       180 ll~~L~~~-G~-vlV~ThN~  197 (454)
                      ++.+|... |. +|++||+.
T Consensus       180 ~l~~L~~~~~~tii~~tHd~  199 (235)
T COG1122         180 LLKKLKEEGGKTIIIVTHDL  199 (235)
T ss_pred             HHHHHHhcCCCeEEEEeCcH
Confidence            99999987 44 99999985

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.61  E-value=8.9e-16  Score=150.77  Aligned_cols=143  Identities=13%  Similarity=0.060  Sum_probs=87.5

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh--hhcccchhhhhhccccCCCC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN--QVAEKSLRSSISGWITNLPF  116 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~~~  116 (454)
                      ...++.-++|+|+||||||||+++|+|.+++. .|  .+.+++-.       ....+.  .....++.+++.........
T Consensus        46 ~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~-~G--~I~~~g~~-------~~~~~~~~~~~~~tv~enl~~~~~~~~~  115 (264)
T PRK13546         46 KAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT-VG--KVDRNGEV-------SVIAISAGLSGQLTGIENIEFKMLCMGF  115 (264)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC-ce--EEEECCEE-------eEEecccCCCCCCcHHHHHHHHHHHcCC
Confidence            34567889999999999999999999998742 33  33333210       001111  22334555555211110011


Q ss_pred             ChH----HHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHH
Q 012882          117 DSK----VMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRL  184 (454)
Q Consensus       117 ~~~----~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L  184 (454)
                      ...    ..+.++...++..      .+......+++++       +|++.+|++|+||||+ ++|+..+..+.+++..+
T Consensus       116 ~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~  189 (264)
T PRK13546        116 KRKEIKAMTPKIIEFSELGE------FIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEF  189 (264)
T ss_pred             CHHHHHHHHHHHHHHcCCch------hhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence            111    1122333333321      1111233444443       6888999999999999 89999999999999999


Q ss_pred             HhCCc-EEEEecCC
Q 012882          185 LSTGT-VLVATSNR  197 (454)
Q Consensus       185 ~~~G~-vlV~ThN~  197 (454)
                      .+.|. +|++||+.
T Consensus       190 ~~~g~tiIiisH~~  203 (264)
T PRK13546        190 KEQNKTIFFVSHNL  203 (264)
T ss_pred             HHCCCEEEEEcCCH
Confidence            77776 88899974

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.61  E-value=1.3e-15  Score=146.63  Aligned_cols=149  Identities=13%  Similarity=0.102  Sum_probs=94.7

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--H--HHHHHHHHHHhhh--hhcccchhhhhhccccC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--M--LKINEHMHRLWKN--QVAEKSLRSSISGWITN  113 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--~--~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~  113 (454)
                      ..+++-++|+|+||+|||||+++|+|..++. .|  .+.+.+.  .  ....+.+.++.++  .....++.+++......
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~-~G--~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~   99 (232)
T cd03300          23 IKEGEFFTLLGPSGCGKTTLLRLIAGFETPT-SG--EILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRL   99 (232)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ce--EEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHh
Confidence            3567889999999999999999999998742 33  3433321  0  0122344555544  22345666665211111


Q ss_pred             CCCC----hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882          114 LPFD----SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV  181 (454)
Q Consensus       114 ~~~~----~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll  181 (454)
                      ...+    ....+.++..+++..      .+......+++++       ++++.+|++|+||||+ ++|+.++..+.++|
T Consensus       100 ~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l  173 (232)
T cd03300         100 KKLPKAEIKERVAEALDLVQLEG------YANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLEL  173 (232)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCch------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            1111    123344444444432      1222334455544       6889999999999999 89999999999999


Q ss_pred             HHHHhC-Cc-EEEEecCC
Q 012882          182 SRLLST-GT-VLVATSNR  197 (454)
Q Consensus       182 ~~L~~~-G~-vlV~ThN~  197 (454)
                      .++.++ |. +|++||+.
T Consensus       174 ~~~~~~~~~tiii~sh~~  191 (232)
T cd03300         174 KRLQKELGITFVFVTHDQ  191 (232)
T ss_pred             HHHHHHcCCEEEEEeCCH
Confidence            999864 66 88888874

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.61  E-value=1.4e-15  Score=149.41  Aligned_cols=150  Identities=15%  Similarity=0.191  Sum_probs=96.7

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---------HHHHHHHHHHhhhh----hcccchhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---------LKINEHMHRLWKNQ----VAEKSLRSS  106 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---------~~~~~~i~~~~~~~----~~~~t~~e~  106 (454)
                      ..++.-++|+|+||||||||+++|+|..++ ..|  .+.+++..         ....+.++++.+..    ....++.++
T Consensus        34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G--~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~  110 (265)
T TIGR02769        34 IEEGETVGLLGRSGCGKSTLARLLLGLEKP-AQG--TVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQI  110 (265)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCc--EEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHH
Confidence            456788999999999999999999999874 233  44443210         11234456665542    234567666


Q ss_pred             hhccc---cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHH
Q 012882          107 ISGWI---TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFA  173 (454)
Q Consensus       107 l~~~~---~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~  173 (454)
                      +....   ......  ...+++++..+++..     .........+++++       +||+.+|++|+||||+ +||+..
T Consensus       111 l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~  185 (265)
T TIGR02769       111 IGEPLRHLTSLDESEQKARIAELLDMVGLRS-----EDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVL  185 (265)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh-----hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence            52211   111111  123445555555521     11122233445444       6888999999999999 899999


Q ss_pred             HHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          174 IVALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       174 a~~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      +..+.++|.++.+. |. +|++||+.
T Consensus       186 ~~~l~~~l~~~~~~~g~tiiivsH~~  211 (265)
T TIGR02769       186 QAVILELLRKLQQAFGTAYLFITHDL  211 (265)
T ss_pred             HHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence            99999999999864 66 89999984

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.61  E-value=1.8e-15  Score=144.79  Aligned_cols=148  Identities=21%  Similarity=0.151  Sum_probs=95.2

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-HHHHHHHHHHhhhhh----cccchhhhhhcccc---
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-LKINEHMHRLWKNQV----AEKSLRSSISGWIT---  112 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-~~~~~~i~~~~~~~~----~~~t~~e~l~~~~~---  112 (454)
                      .+++-++|+|+||||||||+++|+|..++ ..  +.+.+++.- ....+.+.++.+...    ...++.+++.....   
T Consensus         4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~--G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~   80 (223)
T TIGR03771         4 DKGELLGLLGPNGAGKTTLLRAILGLIPP-AK--GTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI   80 (223)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCC-CC--ceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence            45788999999999999999999998864 23  344443321 122234555555421    12456666522111   


Q ss_pred             C-C--CC--ChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          113 N-L--PF--DSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       113 ~-~--~~--~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                      . .  ..  ....+++++..+++...      .......+++++       ++|+.+|++|+||||+ ++|+.++..+.+
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~  154 (223)
T TIGR03771        81 GWLRRPCVADFAAVRDALRRVGLTEL------ADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTE  154 (223)
T ss_pred             ccccCCcHHHHHHHHHHHHHhCCchh------hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence            0 0  11  11234455555555321      122233444443       6889999999999999 899999999999


Q ss_pred             HHHHHHhCCc-EEEEecCC
Q 012882          180 IVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       180 ll~~L~~~G~-vlV~ThN~  197 (454)
                      ++.++.++|. +|++||+.
T Consensus       155 ~l~~~~~~~~tvii~sH~~  173 (223)
T TIGR03771       155 LFIELAGAGTAILMTTHDL  173 (223)
T ss_pred             HHHHHHHcCCEEEEEeCCH
Confidence            9999987776 89999974

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.61  E-value=1.2e-15  Score=146.58  Aligned_cols=152  Identities=16%  Similarity=0.169  Sum_probs=90.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh-hhcccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN-QVAEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~  112 (454)
                      ..++.-++|+||||||||||+++|+|..++ ..  +.+.+.+.      .....+.+.++.+. .....|+.+++.....
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~--G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~  101 (234)
T cd03251          25 IPAGETVALVGPSGSGKSTLVNLIPRFYDV-DS--GRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRP  101 (234)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccccC-CC--CEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHhhccCC
Confidence            346777999999999999999999999874 23  44554331      11223445555544 1112466666632211


Q ss_pred             CCCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          113 NLPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       113 ~~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                      .  ......+......++....     +...........+++++       +||+.+|++|+||||+ ++|+.+...+.+
T Consensus       102 ~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~  179 (234)
T cd03251         102 G--ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA  179 (234)
T ss_pred             C--CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence            1  1112222221111111100     00001111122344443       6888999999999999 899999999999


Q ss_pred             HHHHHHhCCc-EEEEecCC
Q 012882          180 IVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       180 ll~~L~~~G~-vlV~ThN~  197 (454)
                      +|.++.+ |. +|++||+.
T Consensus       180 ~l~~~~~-~~tii~~sh~~  197 (234)
T cd03251         180 ALERLMK-NRTTFVIAHRL  197 (234)
T ss_pred             HHHHhcC-CCEEEEEecCH
Confidence            9999965 65 88999985

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.61  E-value=1.9e-15  Score=148.73  Aligned_cols=149  Identities=14%  Similarity=0.176  Sum_probs=94.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh---hcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ---VAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~---~~~~t~~e~l~~~  110 (454)
                      ..++.-++|.||||||||||+++|+|.+++ ..  +.+.+.+.      .....+.+.++.+..   ....++.+++...
T Consensus        32 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~-~~--G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~  108 (269)
T PRK13648         32 IPKGQWTSIVGHNGSGKSTIAKLMIGIEKV-KS--GEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFG  108 (269)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCC-Cc--eEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhh
Confidence            356788999999999999999999999874 23  34444331      123344455555542   2233444444211


Q ss_pred             ccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          111 ITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       111 ~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                      ........    ..++.++..+++...      .......+++++       +|++.+|++|+||||+ ++|+.++..+.
T Consensus       109 ~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~  182 (269)
T PRK13648        109 LENHAVPYDEMHRRVSEALKQVDMLER------ADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLL  182 (269)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHcCCchh------hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence            11111111    233444454444221      111223344443       6888999999999999 89999999999


Q ss_pred             HHHHHHHhC-Cc-EEEEecCC
Q 012882          179 GIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       179 ~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      ++|.++.++ |. +|++||+.
T Consensus       183 ~~L~~~~~~~~~tiiivtH~~  203 (269)
T PRK13648        183 DLVRKVKSEHNITIISITHDL  203 (269)
T ss_pred             HHHHHHHHhcCCEEEEEecCc
Confidence            999999764 66 88899885

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.61  E-value=9.9e-16  Score=163.86  Aligned_cols=150  Identities=17%  Similarity=0.158  Sum_probs=100.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEech--h-----HHHHHHHHHHHhhh-----hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE--A-----MLKINEHMHRLWKN-----QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~--f-----~~~~~~~i~~~~~~-----~~~~~t~~e~l  107 (454)
                      ..++.-++|+||||||||||+++|+|..++ ..|  .+.+++  .     .....+.++++.|.     ..+.+|+.+++
T Consensus       286 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-~~G--~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l  362 (510)
T PRK09700        286 VCRGEILGFAGLVGSGRTELMNCLFGVDKR-AGG--EIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNM  362 (510)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCcC-CCC--eEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHh
Confidence            345677999999999999999999999864 233  444432  1     11223346677664     34456788876


Q ss_pred             hcccc----------CCCCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC
Q 012882          108 SGWIT----------NLPFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ  167 (454)
Q Consensus       108 ~~~~~----------~~~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~  167 (454)
                      .....          ......   ..+++++..+++..     +........+++++       ++|+.+|+||+||||+
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt  437 (510)
T PRK09700        363 AISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC-----HSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPT  437 (510)
T ss_pred             ccccccccccccccccccChHHHHHHHHHHHHhcCCCC-----CCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCC
Confidence            32111          000011   23445566655521     11223344566654       6888999999999999


Q ss_pred             -CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          168 -TVDVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       168 -~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                       +||+..+..+.++|..+.++|. ||++||+.
T Consensus       438 ~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~  469 (510)
T PRK09700        438 RGIDVGAKAEIYKVMRQLADDGKVILMVSSEL  469 (510)
T ss_pred             CCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence             8999999999999999987776 99999984

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.61  E-value=1.1e-15  Score=148.23  Aligned_cols=155  Identities=17%  Similarity=0.190  Sum_probs=97.4

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCccc--CceEEEechh--------HHHHHHHHHHHhhh--hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVK--HRQRFHFHEA--------MLKINEHMHRLWKN--QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~--~k~rv~f~~f--------~~~~~~~i~~~~~~--~~~~~t~~e~l  107 (454)
                      ..+++-++|+|+||||||||+++|+|..++...  ..+++.+++.        ....+..+.++++.  ... .|+.+++
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l  102 (247)
T TIGR00972        24 IPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNI  102 (247)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHH
Confidence            356788999999999999999999999864200  1455555332        11234456666655  233 6777776


Q ss_pred             hccc--cCCCCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882          108 SGWI--TNLPFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI  174 (454)
Q Consensus       108 ~~~~--~~~~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a  174 (454)
                      ....  .......   ..++.++..+++....  ...+......+++++       +||+.+|++|+||||+ ++|+.++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~  180 (247)
T TIGR00972       103 AYGPRLHGIKDKKELDEIVEESLKKAALWDEV--KDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIAT  180 (247)
T ss_pred             HhHHHhcCCCCHHHHHHHHHHHHHHcCCCcch--hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence            3211  1111111   2334455555542000  011112223444444       6888999999999999 8999999


Q ss_pred             HHHHHHHHHHHhCCcEEEEecCC
Q 012882          175 VALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       175 ~~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      ..+.++|..+.+..++|++||+.
T Consensus       181 ~~l~~~l~~~~~~~tiiivsH~~  203 (247)
T TIGR00972       181 GKIEELIQELKKKYTIVIVTHNM  203 (247)
T ss_pred             HHHHHHHHHHHhcCeEEEEecCH
Confidence            99999999997754499999984

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.61  E-value=1.3e-15  Score=162.80  Aligned_cols=154  Identities=18%  Similarity=0.101  Sum_probs=103.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-------HHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-------LKINEHMHRLWKN--QVAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-------~~~~~~i~~~~~~--~~~~~t~~e~l~~~  110 (454)
                      ..+++-++|+||||||||||+++|+|.+++. ...+.+.+++..       ...++.++++.|+  ....+|+.+++...
T Consensus        28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~  106 (506)
T PRK13549         28 VRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLG  106 (506)
T ss_pred             EeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhc
Confidence            3467789999999999999999999988741 123455543311       1122346666665  34557888877322


Q ss_pred             ccCC---CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          111 ITNL---PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       111 ~~~~---~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      ....   ..+.    ..+++++..+++..      ........+++++       +||+.+|+||+||||+ +||+..+.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~  180 (506)
T PRK13549        107 NEITPGGIMDYDAMYLRAQKLLAQLKLDI------NPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETA  180 (506)
T ss_pred             ccccccCCcCHHHHHHHHHHHHHHcCCCC------CcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence            1110   1111    23455566555521      1223345566665       6889999999999999 89999999


Q ss_pred             HHHHHHHHHHhCCc-EEEEecCCCcc
Q 012882          176 ALSGIVSRLLSTGT-VLVATSNRAPW  200 (454)
Q Consensus       176 ~L~~ll~~L~~~G~-vlV~ThN~~P~  200 (454)
                      .+.++|.++.++|. ||++||+....
T Consensus       181 ~l~~~l~~l~~~~~tvi~~tH~~~~~  206 (506)
T PRK13549        181 VLLDIIRDLKAHGIACIYISHKLNEV  206 (506)
T ss_pred             HHHHHHHHHHHCCCEEEEEeCcHHHH
Confidence            99999999987776 99999986433

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.61  E-value=3e-15  Score=144.27  Aligned_cols=151  Identities=15%  Similarity=0.117  Sum_probs=92.4

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HHHHHHHHHHhhhh-hcccchhhhhhccccC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LKINEHMHRLWKNQ-VAEKSLRSSISGWITN  113 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~~  113 (454)
                      .+++-++|+|+||||||||+++|+|..++ ..|  .+.+++..      ....+.+.++.|.. ....|+.+++......
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G--~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~  102 (237)
T cd03252          26 KPGEVVGIVGRSGSGKSTLTKLIQRFYVP-ENG--RVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPG  102 (237)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCC--EEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHHhhccCCC
Confidence            46778999999999999999999999874 233  45444321      12233455555541 1234666666322111


Q ss_pred             CCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882          114 LPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI  180 (454)
Q Consensus       114 ~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l  180 (454)
                        .........+...++....     +....+..-...+++++       +|++.+|++|+||||+ ++|+.....+.++
T Consensus       103 --~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~  180 (237)
T cd03252         103 --MSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN  180 (237)
T ss_pred             --CCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHH
Confidence              1122222222222221110     00111122234455554       6889999999999999 8999999999999


Q ss_pred             HHHHHhCCc-EEEEecCC
Q 012882          181 VSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       181 l~~L~~~G~-vlV~ThN~  197 (454)
                      |..+.+ |. +|++||+.
T Consensus       181 l~~~~~-~~tiii~sH~~  197 (237)
T cd03252         181 MHDICA-GRTVIIIAHRL  197 (237)
T ss_pred             HHHhcC-CCEEEEEeCCH
Confidence            999964 66 88899874

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.61  E-value=3.3e-15  Score=143.14  Aligned_cols=152  Identities=13%  Similarity=0.156  Sum_probs=92.2

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh-hcccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ-VAEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~  112 (454)
                      .++++-++|+||||||||||+++|+|.+++ ..  +.+.++..      .......+.++.+.. ....++.+++.....
T Consensus        26 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~--G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~~~  102 (229)
T cd03254          26 IKPGETVAIVGPTGAGKTTLINLLMRFYDP-QK--GQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRP  102 (229)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCcCC-CC--CEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHHhccCC
Confidence            346677999999999999999999999874 23  34444331      112334455555541 112366666532211


Q ss_pred             CCCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          113 NLPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       113 ~~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                        .......+..+...++....     +...........+++++       ++|+.+|++|+||||+ +||+..+..+.+
T Consensus       103 --~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~  180 (229)
T cd03254         103 --NATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQE  180 (229)
T ss_pred             --CCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence              11222233333333322111     01111111123444444       6889999999999999 899999999999


Q ss_pred             HHHHHHhCCc-EEEEecCC
Q 012882          180 IVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       180 ll~~L~~~G~-vlV~ThN~  197 (454)
                      +|..+. +|. +|++||+.
T Consensus       181 ~l~~~~-~~~tii~~sh~~  198 (229)
T cd03254         181 ALEKLM-KGRTSIIIAHRL  198 (229)
T ss_pred             HHHHhc-CCCEEEEEecCH
Confidence            999986 466 88999985

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.60  E-value=6.2e-16  Score=156.58  Aligned_cols=150  Identities=11%  Similarity=0.162  Sum_probs=97.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---------HHHHHHHHHHHhhh----hhcccchhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---------MLKINEHMHRLWKN----QVAEKSLRSS  106 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---------~~~~~~~i~~~~~~----~~~~~t~~e~  106 (454)
                      ...++-++|+|+||||||||+++|+|.+++ ..  +.+.+.+.         ....+..+.++.|.    ..+.+++.++
T Consensus        44 i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p-~~--G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~  120 (331)
T PRK15079         44 LYEGETLGVVGESGCGKSTFARAIIGLVKA-TD--GEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEI  120 (331)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHCCCCC-CC--cEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHH
Confidence            356778999999999999999999999874 23  44555331         11223345555554    2334566666


Q ss_pred             hhccccCC--CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHH
Q 012882          107 ISGWITNL--PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVF  172 (454)
Q Consensus       107 l~~~~~~~--~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~  172 (454)
                      +.......  ..+.    ..+++++..+++..     .........+++++       +||+.+|+||++|||+ +||+.
T Consensus       121 i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~-----~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~  195 (331)
T PRK15079        121 IAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP-----NLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVS  195 (331)
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh-----HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence            53211110  0111    23344444444421     11122234556555       6899999999999999 89999


Q ss_pred             HHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          173 AIVALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       173 ~a~~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      .+..+.++|.++.++ |. +|++|||.
T Consensus       196 ~~~~i~~lL~~l~~~~~~til~iTHdl  222 (331)
T PRK15079        196 IQAQVVNLLQQLQREMGLSLIFIAHDL  222 (331)
T ss_pred             HHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            999999999999874 77 99999985

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.60  E-value=2.6e-15  Score=144.78  Aligned_cols=152  Identities=14%  Similarity=0.163  Sum_probs=91.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HHHHHHHHHHhhhh-hcccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LKINEHMHRLWKNQ-VAEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~  112 (454)
                      .++++-++|+|+||||||||+++|+|.+++ ..|  .+.+++..      ......+.++.+.. ....|+.+++.....
T Consensus        26 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G--~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~  102 (238)
T cd03249          26 IPPGKTVALVGSSGCGKSTVVSLLERFYDP-TSG--EILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKP  102 (238)
T ss_pred             ecCCCEEEEEeCCCCCHHHHHHHHhccCCC-CCC--EEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHhhccCC
Confidence            356788999999999999999999999874 244  44443311      11223345554431 112466666632211


Q ss_pred             CCCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          113 NLPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       113 ~~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                      .  .........+...++....     +...........+++++       ++|+.+|++|+||||+ ++|+..+..+.+
T Consensus       103 ~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~  180 (238)
T cd03249         103 D--ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE  180 (238)
T ss_pred             C--CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence            1  1112222222222221100     00000111123344443       6888999999999999 899999999999


Q ss_pred             HHHHHHhCCc-EEEEecCC
Q 012882          180 IVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       180 ll~~L~~~G~-vlV~ThN~  197 (454)
                      +|..+. +|. +|++||+.
T Consensus       181 ~l~~~~-~g~~vi~~sh~~  198 (238)
T cd03249         181 ALDRAM-KGRTTIVIAHRL  198 (238)
T ss_pred             HHHHhc-CCCEEEEEeCCH
Confidence            999987 676 89999984

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.60  E-value=4.3e-15  Score=141.53  Aligned_cols=153  Identities=18%  Similarity=0.157  Sum_probs=94.9

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HHHHHHHHHHhhhh-hcccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LKINEHMHRLWKNQ-VAEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~  112 (454)
                      ..+++-++|+||||||||||+++|+|..++ ..  +.+.+.+..      ......+.++.+.. ....|+.+++.....
T Consensus        27 i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~-~~--G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~  103 (220)
T cd03245          27 IRAGEKVAIIGRVGSGKSTLLKLLAGLYKP-TS--GSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAP  103 (220)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCcCC-CC--CeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHHhhcCCC
Confidence            356788999999999999999999999864 23  445554321      12233455555541 112466666532111


Q ss_pred             CCCCChHHHHHHHHHHhhhhHHhhcc-----hHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          113 NLPFDSKVMEWVAAEEKYKQEVQMKN-----ILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       113 ~~~~~~~~~e~ll~~~~l~~~~~~~~-----~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                        .......+.++..+++........     .+......+++++       +|++.+|++|+||||+ +||+.++..+.+
T Consensus       104 --~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~  181 (220)
T cd03245         104 --LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKE  181 (220)
T ss_pred             --CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence              112233344444444432111000     0000112455554       6888999999999999 899999999999


Q ss_pred             HHHHHHhCCcEEEEecCC
Q 012882          180 IVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       180 ll~~L~~~G~vlV~ThN~  197 (454)
                      +|.++.+..++|++||+.
T Consensus       182 ~l~~~~~~~tii~~sH~~  199 (220)
T cd03245         182 RLRQLLGDKTLIIITHRP  199 (220)
T ss_pred             HHHHhcCCCEEEEEeCCH
Confidence            999987654499999985

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.60  E-value=4e-15  Score=145.14  Aligned_cols=151  Identities=11%  Similarity=0.144  Sum_probs=102.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-------HHHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-------MLKINEHMHRLWKN--QVAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-------~~~~~~~i~~~~~~--~~~~~t~~e~l~~~  110 (454)
                      .+.+.-++++|.+|+|||||++++.+.-.| ..|+..+...+.       ....++.++.+.|+  +....|+.+|+...
T Consensus        29 I~~GeI~GIIG~SGAGKSTLiR~iN~Le~P-tsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~P  107 (339)
T COG1135          29 IPKGEIFGIIGYSGAGKSTLLRLINLLERP-TSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFP  107 (339)
T ss_pred             EcCCcEEEEEcCCCCcHHHHHHHHhccCCC-CCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhh
Confidence            456677999999999999999999987764 355555544221       23455666666665  34456677766222


Q ss_pred             --ccCCCCCh--HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          111 --ITNLPFDS--KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       111 --~~~~~~~~--~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                        ..+.+...  .++.++++..++.++.      .....++++++       |||+.+|+||+.||+| .|||.+...+.
T Consensus       108 Leiag~~k~ei~~RV~elLelVgL~dk~------~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL  181 (339)
T COG1135         108 LELAGVPKAEIKQRVAELLELVGLSDKA------DRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSIL  181 (339)
T ss_pred             HhhcCCCHHHHHHHHHHHHHHcCChhhh------ccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHH
Confidence              22222221  3444555555554322      22233455554       7999999999999999 79999999999


Q ss_pred             HHHHHHHhC-Cc-EEEEecCC
Q 012882          179 GIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       179 ~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      ++|..+.++ |. ++++||.+
T Consensus       182 ~LL~~In~~lglTIvlITHEm  202 (339)
T COG1135         182 ELLKDINRELGLTIVLITHEM  202 (339)
T ss_pred             HHHHHHHHHcCCEEEEEechH
Confidence            999999865 87 99999974

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.60  E-value=1.6e-15  Score=145.80  Aligned_cols=155  Identities=15%  Similarity=0.102  Sum_probs=94.3

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCc-ccCceEEEechh--HH-HH-HHHHHHHhhhh----hcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGI-VKHRQRFHFHEA--ML-KI-NEHMHRLWKNQ----VAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~-~~~k~rv~f~~f--~~-~~-~~~i~~~~~~~----~~~~t~~e~l~~~  110 (454)
                      ..+++-++|+||||+|||||+++|+|.+++. ....+.+.+.+.  .. .. ...+.++.++.    .+..++.+++...
T Consensus         9 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~   88 (230)
T TIGR02770         9 LKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIET   88 (230)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHH
Confidence            3467889999999999999999999998741 002334444331  11 11 12355555542    1234555554221


Q ss_pred             c--cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          111 I--TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       111 ~--~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                      .  ......  ...+++++..+++...   ..........+++++       +|++.+|+||+||||+ ++|+.+...+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~  165 (230)
T TIGR02770        89 LRSLGKLSKQARALILEALEAVGLPDP---EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVL  165 (230)
T ss_pred             HHHcCccHHHHHHHHHHHHHHcCCCch---HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHH
Confidence            1  111111  1234455555555310   011122233445444       6888999999999999 89999999999


Q ss_pred             HHHHHHHhC-Cc-EEEEecCC
Q 012882          179 GIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       179 ~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      ++|.++.++ |. ||++||+.
T Consensus       166 ~~l~~~~~~~~~tiii~sH~~  186 (230)
T TIGR02770       166 KLLRELRQLFGTGILLITHDL  186 (230)
T ss_pred             HHHHHHHHhcCCEEEEEeCCH
Confidence            999999764 66 88888874

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.60  E-value=4e-15  Score=136.79  Aligned_cols=123  Identities=22%  Similarity=0.246  Sum_probs=79.5

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HHHHHHHHHHhhhhhcccchhhhhhccccCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LKINEHMHRLWKNQVAEKSLRSSISGWITNL  114 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~  114 (454)
                      .+++-++|.||||+|||||+++|+|..++. .  +.+.+++..      ......+.++              ++...  
T Consensus        26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~--G~i~~~g~~~~~~~~~~~~~~i~~~--------------~q~~~--   86 (173)
T cd03246          26 EPGESLAIIGPSGSGKSTLARLILGLLRPT-S--GRVRLDGADISQWDPNELGDHVGYL--------------PQDDE--   86 (173)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhccCCC-C--CeEEECCEEcccCCHHHHHhheEEE--------------CCCCc--
Confidence            456779999999999999999999998742 3  344443311      0111222222              22211  


Q ss_pred             CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEE
Q 012882          115 PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLV  192 (454)
Q Consensus       115 ~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV  192 (454)
                      .+..++.+++     +.+   .......+|       +||+.+|++|+||||+ ++|+.++..+.+++..+.++|. +|+
T Consensus        87 ~~~~tv~~~l-----LS~---G~~qrv~la-------~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~  151 (173)
T cd03246          87 LFSGSIAENI-----LSG---GQRQRLGLA-------RALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIV  151 (173)
T ss_pred             cccCcHHHHC-----cCH---HHHHHHHHH-------HHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEE
Confidence            1112444443     110   000112233       4556899999999999 8999999999999999987777 888


Q ss_pred             EecCC
Q 012882          193 ATSNR  197 (454)
Q Consensus       193 ~ThN~  197 (454)
                      +||+.
T Consensus       152 ~sh~~  156 (173)
T cd03246         152 IAHRP  156 (173)
T ss_pred             EeCCH
Confidence            99884

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.60  E-value=1.8e-15  Score=148.66  Aligned_cols=152  Identities=14%  Similarity=0.129  Sum_probs=93.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhhh----hcccchhhhhhccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKNQ----VAEKSLRSSISGWI  111 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~~----~~~~t~~e~l~~~~  111 (454)
                      ..++.-++|+|||||||||||++|+|.+++ ..|...+.....    .......+.++.+..    .+..++.+++....
T Consensus        36 i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~  114 (267)
T PRK15112         36 LREGQTLAIIGENGSGKSTLAKMLAGMIEP-TSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPL  114 (267)
T ss_pred             ecCCCEEEEEcCCCCCHHHHHHHHhCCCCC-CCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHH
Confidence            456788999999999999999999999875 244333322211    111223355555442    22334444442111


Q ss_pred             c-CCCCC----hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          112 T-NLPFD----SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       112 ~-~~~~~----~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                      . .....    .+.++.++..+++...     ........+++++       ++|+.+|+||+||||+ ++|+..+..+.
T Consensus       115 ~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~  189 (267)
T PRK15112        115 RLNTDLEPEQREKQIIETLRQVGLLPD-----HASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLI  189 (267)
T ss_pred             HhccCCCHHHHHHHHHHHHHHcCCChH-----HHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHH
Confidence            0 00011    1234455555555211     0111223455444       6888999999999999 89999999999


Q ss_pred             HHHHHHHhC-Cc-EEEEecCC
Q 012882          179 GIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       179 ~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      ++|.++.++ |. ||++||+.
T Consensus       190 ~~l~~~~~~~g~tviivsH~~  210 (267)
T PRK15112        190 NLMLELQEKQGISYIYVTQHL  210 (267)
T ss_pred             HHHHHHHHHcCcEEEEEeCCH
Confidence            999999764 66 89999984

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.60  E-value=1.5e-15  Score=162.05  Aligned_cols=151  Identities=11%  Similarity=0.099  Sum_probs=101.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEech--h-----HHHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE--A-----MLKINEHMHRLWKN--QVAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~--f-----~~~~~~~i~~~~~~--~~~~~t~~e~l~~~  110 (454)
                      ...++-++|+||||||||||+++|+|.+++. .|  .+.+++  .     .....+.++++.|.  ....+|+.+++...
T Consensus        27 i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~-~G--~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~  103 (501)
T PRK10762         27 VYPGRVMALVGENGAGKSTMMKVLTGIYTRD-AG--SILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLG  103 (501)
T ss_pred             EcCCeEEEEECCCCCCHHHHHHHHhCCCCCC-Cc--EEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhc
Confidence            3467889999999999999999999998742 33  444432  1     01112335566554  34557888877322


Q ss_pred             ccC---C-CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882          111 ITN---L-PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI  174 (454)
Q Consensus       111 ~~~---~-~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a  174 (454)
                      ...   . ..+.    ..+++++..+++..      ........+++++       +||+.+|+||+||||+ +||+..+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~  177 (501)
T PRK10762        104 REFVNRFGRIDWKKMYAEADKLLARLNLRF------SSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTET  177 (501)
T ss_pred             cccccccCccCHHHHHHHHHHHHHHcCCCC------CccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHH
Confidence            110   0 0111    23445555555532      1223345566665       6889999999999999 8999999


Q ss_pred             HHHHHHHHHHHhCCc-EEEEecCCCc
Q 012882          175 VALSGIVSRLLSTGT-VLVATSNRAP  199 (454)
Q Consensus       175 ~~L~~ll~~L~~~G~-vlV~ThN~~P  199 (454)
                      ..+.+++.++.+.|. ||++||+...
T Consensus       178 ~~l~~~l~~l~~~~~tvii~sHd~~~  203 (501)
T PRK10762        178 ESLFRVIRELKSQGRGIVYISHRLKE  203 (501)
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            999999999987776 9999998653

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.60  E-value=2e-15  Score=145.74  Aligned_cols=149  Identities=15%  Similarity=0.133  Sum_probs=95.4

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhccccC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWITN  113 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~  113 (454)
                      ..+++-++|.|+||||||||+++|+|.+++ ..  +.+.+.+..    ......+.++++.  .....|+.+++......
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~--G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~   99 (237)
T TIGR00968        23 VPTGSLVALLGPSGSGKSTLLRIIAGLEQP-DS--GRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEI   99 (237)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCC-Cc--eEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHh
Confidence            356788999999999999999999999874 23  344443211    0112334555544  33445677766322111


Q ss_pred             CCCC----hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882          114 LPFD----SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV  181 (454)
Q Consensus       114 ~~~~----~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll  181 (454)
                      ....    ....++++..+++...      .......+++++       ++++.+|++|+||||+ ++|+.++..+.++|
T Consensus       100 ~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l  173 (237)
T TIGR00968       100 RKHPKAKIKARVEELLELVQLEGL------GDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWL  173 (237)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCHhH------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            1111    1233444444444221      122233455544       6888999999999999 89999999999999


Q ss_pred             HHHHhC-Cc-EEEEecCC
Q 012882          182 SRLLST-GT-VLVATSNR  197 (454)
Q Consensus       182 ~~L~~~-G~-vlV~ThN~  197 (454)
                      .++.++ |. +|++||+.
T Consensus       174 ~~~~~~~~~tvli~sH~~  191 (237)
T TIGR00968       174 RKLHDEVHVTTVFVTHDQ  191 (237)
T ss_pred             HHHHHhcCCEEEEEeCCH
Confidence            999775 65 88888874

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.60  E-value=3.8e-16  Score=157.87  Aligned_cols=141  Identities=13%  Similarity=0.126  Sum_probs=92.1

Q ss_pred             EEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhcccc--CCCCC--
Q 012882           48 LYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWIT--NLPFD--  117 (454)
Q Consensus        48 L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~--~~~~~--  117 (454)
                      |+||||||||||+++|+|..++. .  +.+.+++..    ....+.+.++.|.  ..+.+|+.+++.....  .....  
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~-~--G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~   77 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPD-S--GSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEI   77 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCC-c--eEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHH
Confidence            58999999999999999998742 3  445443210    1122345555555  3455677777632211  11111  


Q ss_pred             hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC-C
Q 012882          118 SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST-G  188 (454)
Q Consensus       118 ~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~-G  188 (454)
                      ...+++++..+++..      ........+++++       +||+.+|++|+||||+ ++|+..+..+.++|.++.++ |
T Consensus        78 ~~~~~~~l~~~~l~~------~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g  151 (325)
T TIGR01187        78 KPRVLEALRLVQLEE------FADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLG  151 (325)
T ss_pred             HHHHHHHHHHcCCcc------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence            123344555555422      1222334555554       6889999999999999 89999999999999999764 7


Q ss_pred             c-EEEEecCC
Q 012882          189 T-VLVATSNR  197 (454)
Q Consensus       189 ~-vlV~ThN~  197 (454)
                      . +|++||+.
T Consensus       152 ~tiiivTHd~  161 (325)
T TIGR01187       152 ITFVFVTHDQ  161 (325)
T ss_pred             CEEEEEeCCH
Confidence            6 99999985

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.60  E-value=5.5e-15  Score=136.78  Aligned_cols=121  Identities=15%  Similarity=0.156  Sum_probs=79.3

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhhhcccchhhhhhccccC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQVAEKSLRSSISGWITN  113 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~  113 (454)
                      ..+++-++|.|+||+|||||+++|+|..++ ..+  .+.+++.      .......++++.+                  
T Consensus        22 i~~G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G--~v~~~g~~~~~~~~~~~~~~i~~~~q------------------   80 (180)
T cd03214          22 IEAGEIVGILGPNGAGKSTLLKTLAGLLKP-SSG--EILLDGKDLASLSPKELARKIAYVPQ------------------   80 (180)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCc--EEEECCEECCcCCHHHHHHHHhHHHH------------------
Confidence            346788999999999999999999999874 233  4444321      1122233444432                  


Q ss_pred             CCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHH
Q 012882          114 LPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLL  185 (454)
Q Consensus       114 ~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~  185 (454)
                                ++..+++...      .......+++++       ++++.+|++|+||||+ ++|+.++..+.++|.++.
T Consensus        81 ----------~l~~~gl~~~------~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~  144 (180)
T cd03214          81 ----------ALELLGLAHL------ADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLA  144 (180)
T ss_pred             ----------HHHHcCCHhH------hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence                      1111121110      001112222222       5677999999999999 899999999999999997


Q ss_pred             hC-Cc-EEEEecCC
Q 012882          186 ST-GT-VLVATSNR  197 (454)
Q Consensus       186 ~~-G~-vlV~ThN~  197 (454)
                      ++ |. +|++||+.
T Consensus       145 ~~~~~tiii~sh~~  158 (180)
T cd03214         145 RERGKTVVMVLHDL  158 (180)
T ss_pred             HhcCCEEEEEeCCH
Confidence            75 66 88888874

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.60  E-value=1.2e-15  Score=150.33  Aligned_cols=149  Identities=15%  Similarity=0.100  Sum_probs=92.7

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--HHHHH-HHHHHHhhhhh----cccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--MLKIN-EHMHRLWKNQV----AEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--~~~~~-~~i~~~~~~~~----~~~t~~e~l~~~~~  112 (454)
                      ..++.-++|+||||||||||+++|+|.+++ ..  +.+.+.+.  ..... ..+.++++...    ...++.+++.....
T Consensus        30 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~--G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~  106 (272)
T PRK15056         30 VPGGSIAALVGVNGSGKSTLFKALMGFVRL-AS--GKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRY  106 (272)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-Cc--eEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheecccc
Confidence            346788999999999999999999999874 23  44544332  11111 12455554421    11234444421100


Q ss_pred             ---C---CCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882          113 ---N---LPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA  176 (454)
Q Consensus       113 ---~---~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~  176 (454)
                         .   ....  ...++.++..+++....      ......+++++       +||+.+|+||+||||+ ++|+.++..
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~------~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~  180 (272)
T PRK15056        107 GHMGWLRRAKKRDRQIVTAALARVDMVEFR------HRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEAR  180 (272)
T ss_pred             cccccccCCCHHHHHHHHHHHHHcCChhHh------cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHH
Confidence               0   0101  12334455555553211      11223344443       6888999999999999 899999999


Q ss_pred             HHHHHHHHHhCCc-EEEEecCC
Q 012882          177 LSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       177 L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      +.++|..+.++|. ||++||+.
T Consensus       181 l~~~L~~~~~~g~tviivsH~~  202 (272)
T PRK15056        181 IISLLRELRDEGKTMLVSTHNL  202 (272)
T ss_pred             HHHHHHHHHhCCCEEEEEeCCH
Confidence            9999999987776 89999984

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.60  E-value=4e-15  Score=141.81  Aligned_cols=152  Identities=16%  Similarity=0.189  Sum_probs=92.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HHHHHHHHHHhhhh-hcccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LKINEHMHRLWKNQ-VAEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~  112 (454)
                      .++++-++|+|+||||||||+++|+|..++ ..  +.+.+++..      ....+.+.++.+.. ....|+.+++.... 
T Consensus        27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~--G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~-  102 (221)
T cd03244          27 IKPGEKVGIVGRTGSGKSSLLLALFRLVEL-SS--GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFG-  102 (221)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHcCCCC-CC--CEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHhCcCC-
Confidence            356788999999999999999999998864 23  344443321      12334455555441 12236666652110 


Q ss_pred             CCCCChHHHHHHHHHHhhhhHHh-----hcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          113 NLPFDSKVMEWVAAEEKYKQEVQ-----MKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       113 ~~~~~~~~~e~ll~~~~l~~~~~-----~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                        ..........+..+++.....     ...........+++++       ++|+.+|++|+||||+ ++|+.++..+.+
T Consensus       103 --~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~  180 (221)
T cd03244         103 --EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK  180 (221)
T ss_pred             --CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence              112223333334333322110     0000111222344443       6889999999999999 899999999999


Q ss_pred             HHHHHHhCCcEEEEecCC
Q 012882          180 IVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       180 ll~~L~~~G~vlV~ThN~  197 (454)
                      +|..+.+...+|++||+.
T Consensus       181 ~l~~~~~~~tii~~sh~~  198 (221)
T cd03244         181 TIREAFKDCTVLTIAHRL  198 (221)
T ss_pred             HHHHhcCCCEEEEEeCCH
Confidence            999986543488999874

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.60  E-value=2.1e-15  Score=148.42  Aligned_cols=156  Identities=16%  Similarity=0.181  Sum_probs=93.7

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc--cCceEEEechh--------HHHHHHHHHHHhhh--hhcccchhhh
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEA--------MLKINEHMHRLWKN--QVAEKSLRSS  106 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~--~~k~rv~f~~f--------~~~~~~~i~~~~~~--~~~~~t~~e~  106 (454)
                      ...++.-++|+|+||||||||+++|+|..++..  ...+.+.+.+.        ....++.+.++.+.  ... .|+.++
T Consensus        35 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~en  113 (269)
T PRK14259         35 DIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYEN  113 (269)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccch-hhHHHH
Confidence            345677899999999999999999999875200  12344444321        12334456666655  222 377777


Q ss_pred             hhccccCCCCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          107 ISGWITNLPFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       107 l~~~~~~~~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      +..........   ...++.++..+++...  ...........+++++       +||+.+|++|+||||+ +||+..+.
T Consensus       114 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~  191 (269)
T PRK14259        114 IAFGARINGYTGDMDELVERSLRKAAVWDE--CKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTL  191 (269)
T ss_pred             HhhhhhhcCCcHHHHHHHHHHHHHhCCcch--hhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence            63211111111   1223334444433110  0001111123344443       6888999999999999 89999999


Q ss_pred             HHHHHHHHHHhCCcEEEEecCC
Q 012882          176 ALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       176 ~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      .+.++|.++.+..++|++||+.
T Consensus       192 ~l~~~l~~~~~~~tiiivtH~~  213 (269)
T PRK14259        192 KIEETMHELKKNFTIVIVTHNM  213 (269)
T ss_pred             HHHHHHHHHhcCCEEEEEeCCH
Confidence            9999999996533389999984

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.60  E-value=2.5e-15  Score=146.17  Aligned_cols=148  Identities=18%  Similarity=0.188  Sum_probs=96.0

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh--hhcccchhhhhhccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN--QVAEKSLRSSISGWI  111 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~  111 (454)
                      ...+.-++|+|+||||||||+++|+|..+  ..  +.+.+++.      .......+.++.+.  .....|+.+++....
T Consensus        19 i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~--~~--G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~   94 (248)
T PRK03695         19 VRAGEILHLVGPNGAGKSTLLARMAGLLP--GS--GSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQ   94 (248)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHcCCCC--CC--eEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcC
Confidence            35678899999999999999999999875  23  44544331      11223345566554  234467777763221


Q ss_pred             c-CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhcc-------CCcEEEeeCCC-CCCHHH
Q 012882          112 T-NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQR-------GASILCFDEIQ-TVDVFA  173 (454)
Q Consensus       112 ~-~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~-------~p~lL~LDEp~-~lD~~~  173 (454)
                      . .....  ....++++..+++...      .......+++++       +||+.       +|++|+||||+ ++|+..
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~  168 (248)
T PRK03695         95 PDKTRTEAVASALNEVAEALGLDDK------LGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQ  168 (248)
T ss_pred             ccCCCcHHHHHHHHHHHHHcCCHhH------hcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHH
Confidence            1 11111  1334555665555321      111223344443       57776       67999999999 899999


Q ss_pred             HHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          174 IVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       174 a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      +..+.++|.++.++|. +|++||+.
T Consensus       169 ~~~l~~~L~~~~~~~~tvi~~sH~~  193 (248)
T PRK03695        169 QAALDRLLSELCQQGIAVVMSSHDL  193 (248)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEecCH
Confidence            9999999999987776 88999984

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.59  E-value=1.2e-15  Score=156.87  Aligned_cols=149  Identities=13%  Similarity=0.112  Sum_probs=98.3

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-----H-----HH---HH-HHHHHHhhh--hhcccch
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-----M-----LK---IN-EHMHRLWKN--QVAEKSL  103 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-----~-----~~---~~-~~i~~~~~~--~~~~~t~  103 (454)
                      ...++-++|+|+||||||||+++|+|.+++. .|  .+.+.+.     .     ..   .+ ..+.++.|.  ..+..|+
T Consensus        47 i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~-~G--~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv  123 (382)
T TIGR03415        47 IEEGEICVLMGLSGSGKSSLLRAVNGLNPVS-RG--SVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTV  123 (382)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-Cc--EEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcH
Confidence            4566779999999999999999999998742 34  4444321     0     01   11 235555554  3445677


Q ss_pred             hhhhhcccc--CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCH
Q 012882          104 RSSISGWIT--NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDV  171 (454)
Q Consensus       104 ~e~l~~~~~--~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~  171 (454)
                      .+++.....  .....  ...+++++..+++...      .......+++++       +||+.+|+||+||||+ +||+
T Consensus       124 ~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~------~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~  197 (382)
T TIGR03415       124 EENVAFGLEMQGMPEAERRKRVDEQLELVGLAQW------ADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDP  197 (382)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh------hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCH
Confidence            777632211  11111  1334555555555321      122234455554       7899999999999999 8999


Q ss_pred             HHHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          172 FAIVALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       172 ~~a~~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      ..+..+.++|.++.++ |. +|++||+.
T Consensus       198 ~~r~~l~~~L~~l~~~~~~TII~iTHdl  225 (382)
T TIGR03415       198 LIRTQLQDELLELQAKLNKTIIFVSHDL  225 (382)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            9999999999999864 66 99999984

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.59  E-value=3e-15  Score=148.02  Aligned_cols=150  Identities=12%  Similarity=0.117  Sum_probs=97.4

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEech--h----HHHHHHHHHHHhhhh---hcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE--A----MLKINEHMHRLWKNQ---VAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~--f----~~~~~~~i~~~~~~~---~~~~t~~e~l~~~  110 (454)
                      ..+++-++|+|+||||||||+++|+|..++ ..|  .+.+.+  .    ....+..++++.+..   ....++.+++...
T Consensus        30 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~-~~G--~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~  106 (277)
T PRK13642         30 ITKGEWVSIIGQNGSGKSTTARLIDGLFEE-FEG--KVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFG  106 (277)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCC--EEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhh
Confidence            346788999999999999999999999874 234  444432  1    123344566665542   3345777776322


Q ss_pred             ccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          111 ITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       111 ~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                      ........    ..++.++..+++....      ......+++++       +||+.+|++||||||+ ++|+.++..+.
T Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~  180 (277)
T PRK13642        107 MENQGIPREEMIKRVDEALLAVNMLDFK------TREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIM  180 (277)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHCCCHhHh------hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence            11111111    2234444544442211      11123344443       6888999999999999 89999999999


Q ss_pred             HHHHHHHhC-Cc-EEEEecCCC
Q 012882          179 GIVSRLLST-GT-VLVATSNRA  198 (454)
Q Consensus       179 ~ll~~L~~~-G~-vlV~ThN~~  198 (454)
                      ++|.++.+. |. +|++||+..
T Consensus       181 ~~l~~l~~~~g~tiil~sH~~~  202 (277)
T PRK13642        181 RVIHEIKEKYQLTVLSITHDLD  202 (277)
T ss_pred             HHHHHHHHhcCCEEEEEeCCHH
Confidence            999999874 76 899999854

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.59  E-value=2.4e-15  Score=146.56  Aligned_cols=156  Identities=15%  Similarity=0.140  Sum_probs=94.5

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc--cCceEEEech--h------HHHHHHHHHHHhhhh-hcccchhhhh
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHE--A------MLKINEHMHRLWKNQ-VAEKSLRSSI  107 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~--~~k~rv~f~~--f------~~~~~~~i~~~~~~~-~~~~t~~e~l  107 (454)
                      ...++.-++|+|+||||||||+++|+|.+++..  ...+.+.+.+  .      .......++++.|+. ....|+.+++
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni  108 (254)
T PRK14273         29 KILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNI  108 (254)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccccCcHHHHH
Confidence            345678899999999999999999999886420  0134444322  1      112344566666551 1136777776


Q ss_pred             hccccCCC-CCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882          108 SGWITNLP-FDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI  174 (454)
Q Consensus       108 ~~~~~~~~-~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a  174 (454)
                      ........ ...    ..+++++..+++....  ..........+++++       ++|+.+|+||+||||+ ++|+.++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~  186 (254)
T PRK14273        109 SYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV--KDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPIST  186 (254)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh--HHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHH
Confidence            32211111 111    2233333333331100  001111223444444       6888999999999999 8999999


Q ss_pred             HHHHHHHHHHHhCCc-EEEEecCC
Q 012882          175 VALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       175 ~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      ..+.++|..+.+ +. +|++||+.
T Consensus       187 ~~l~~~l~~~~~-~~tvii~sH~~  209 (254)
T PRK14273        187 GKIEELIINLKE-SYTIIIVTHNM  209 (254)
T ss_pred             HHHHHHHHHHhc-CCEEEEEeCCH
Confidence            999999999964 55 88999974

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.59  E-value=1.4e-14  Score=134.45  Aligned_cols=181  Identities=15%  Similarity=0.094  Sum_probs=119.3

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LKINEHMHRLWKN--QVAEKSLRSSISGW  110 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~~~~~i~~~~~~--~~~~~t~~e~l~~~  110 (454)
                      ...+++-+.|+||||+||||||+.|+|.+.+   ..+.+++++..      .++.+....++|.  ....+++.|.+-..
T Consensus        23 ~~~pGev~ailGPNGAGKSTlLk~LsGel~p---~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mG   99 (259)
T COG4559          23 DLRPGEVLAILGPNGAGKSTLLKALSGELSP---DSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMG   99 (259)
T ss_pred             eccCCcEEEEECCCCccHHHHHHHhhCccCC---CCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhc
Confidence            4567888999999999999999999999864   23455554432      1223333444554  44556778877332


Q ss_pred             ccCC-C-----CChHHHHHHHHHHhhhhHHh--------hcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          111 ITNL-P-----FDSKVMEWVAAEEKYKQEVQ--------MKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       111 ~~~~-~-----~~~~~~e~ll~~~~l~~~~~--------~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      .... .     .+....+..+...++.+..+        -+...-++|+.+.+- -.-..++++|+||||+ .+|+..+.
T Consensus       100 r~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl-~~~v~~~r~L~LDEPtsaLDi~HQ~  178 (259)
T COG4559         100 RIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQL-WPPVPSGRWLFLDEPTSALDIAHQH  178 (259)
T ss_pred             ccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHc-cCCCCCCceEEecCCccccchHHHH
Confidence            2221 1     12244566666555543211        111122333333211 0112455799999999 79999999


Q ss_pred             HHHHHHHHHHhCCc-EEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCchh
Q 012882          176 ALSGIVSRLLSTGT-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVD  233 (454)
Q Consensus       176 ~L~~ll~~L~~~G~-vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~D  233 (454)
                      ...++.+.+...|. |+++-|+..-...|++++          ++.+.++++..+++.|
T Consensus       179 ~tl~laR~la~~g~~V~~VLHDLNLAA~YaDri----------vll~~Grv~a~g~p~~  227 (259)
T COG4559         179 HTLRLARQLAREGGAVLAVLHDLNLAAQYADRI----------VLLHQGRVIASGSPQD  227 (259)
T ss_pred             HHHHHHHHHHhcCCcEEEEEccchHHHHhhhee----------eeeeCCeEeecCCHHH
Confidence            99999999999888 999999999999999885          5678888888777643

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.59  E-value=6.4e-15  Score=141.83  Aligned_cols=152  Identities=13%  Similarity=0.164  Sum_probs=91.4

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh-hhcccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN-QVAEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~  112 (454)
                      ..++.-++|+||||||||||+++|+|..++ ..  +.+.+++.      ....+..+.++.+. .....|+.+++.....
T Consensus        24 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-~~--G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~  100 (236)
T cd03253          24 IPAGKKVAIVGPSGSGKSTILRLLFRFYDV-SS--GSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRP  100 (236)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcccCC-CC--CEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHHHhhcCC
Confidence            346778999999999999999999999874 23  44554331      11223344555444 1123466666622211


Q ss_pred             CCCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          113 NLPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       113 ~~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                      .  .........+...++....     +....+..-...+++++       +||+.+|++|+||||+ ++|+.+...+.+
T Consensus       101 ~--~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~  178 (236)
T cd03253         101 D--ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA  178 (236)
T ss_pred             C--CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence            1  1122222222222221110     00001111122344443       7889999999999999 899999999999


Q ss_pred             HHHHHHhCCc-EEEEecCC
Q 012882          180 IVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       180 ll~~L~~~G~-vlV~ThN~  197 (454)
                      +|..+.+ |. +|++||+.
T Consensus       179 ~l~~~~~-~~tiii~sh~~  196 (236)
T cd03253         179 ALRDVSK-GRTTIVIAHRL  196 (236)
T ss_pred             HHHHhcC-CCEEEEEcCCH
Confidence            9999976 76 88888874

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.59  E-value=4.3e-15  Score=144.87  Aligned_cols=141  Identities=17%  Similarity=0.109  Sum_probs=90.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhh--hcc--cchhhhhhccccCCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQ--VAE--KSLRSSISGWITNLP  115 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~--~~~--~t~~e~l~~~~~~~~  115 (454)
                      ..++.-++|+|+||||||||+++|+|.+++. .  +.+.+..     ...+.++.+..  ...  .++.+++...   ..
T Consensus        27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~-~--G~i~~~~-----~~~i~~v~q~~~~~~~l~~~~~~~~~~~---~~   95 (251)
T PRK09544         27 LKPGKILTLLGPNGAGKSTLVRVVLGLVAPD-E--GVIKRNG-----KLRIGYVPQKLYLDTTLPLTVNRFLRLR---PG   95 (251)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-c--eEEEECC-----ccCEEEeccccccccccChhHHHHHhcc---cc
Confidence            3567889999999999999999999998642 3  4444432     11234444431  111  1233332110   01


Q ss_pred             CChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC
Q 012882          116 FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST  187 (454)
Q Consensus       116 ~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~  187 (454)
                      .....+..++..+++...      +......+++++       +||+.+|++|+||||+ ++|+.++..+.++|.++.++
T Consensus        96 ~~~~~~~~~l~~~gl~~~------~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~  169 (251)
T PRK09544         96 TKKEDILPALKRVQAGHL------IDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRE  169 (251)
T ss_pred             ccHHHHHHHHHHcCChHH------HhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHh
Confidence            122334455555555321      122234455554       6888999999999999 89999999999999999765


Q ss_pred             -Cc-EEEEecCC
Q 012882          188 -GT-VLVATSNR  197 (454)
Q Consensus       188 -G~-vlV~ThN~  197 (454)
                       |. +|++||+.
T Consensus       170 ~g~tiiivsH~~  181 (251)
T PRK09544        170 LDCAVLMVSHDL  181 (251)
T ss_pred             cCCEEEEEecCH
Confidence             66 88899984

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.58  E-value=3.9e-15  Score=158.56  Aligned_cols=149  Identities=16%  Similarity=0.151  Sum_probs=99.5

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEech--h-----HHHHHHHHHHHhhh--hhcccchhhhhhccc
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE--A-----MLKINEHMHRLWKN--QVAEKSLRSSISGWI  111 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~--f-----~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~  111 (454)
                      .++.-++|+|+||||||||+++|+|.+++ ..|  .+.+++  .     ....+..++++.|.  .....|+.+++....
T Consensus        22 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-~~G--~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~   98 (491)
T PRK10982         22 RPHSIHALMGENGAGKSTLLKCLFGIYQK-DSG--SILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGR   98 (491)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHcCCCCC-Cce--EEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccc
Confidence            45677999999999999999999999864 233  444332  1     11123345566655  334567888773221


Q ss_pred             c---CCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882          112 T---NLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA  176 (454)
Q Consensus       112 ~---~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~  176 (454)
                      .   ....+.    ..+++++..+++..      ........+++++       +||+.+|+||+||||+ ++|+..+..
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~  172 (491)
T PRK10982         99 YPTKGMFVDQDKMYRDTKAIFDELDIDI------DPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNH  172 (491)
T ss_pred             ccccccccCHHHHHHHHHHHHHHcCCCC------CccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Confidence            1   110111    23344555544421      1223345566665       6888999999999999 899999999


Q ss_pred             HHHHHHHHHhCCc-EEEEecCCC
Q 012882          177 LSGIVSRLLSTGT-VLVATSNRA  198 (454)
Q Consensus       177 L~~ll~~L~~~G~-vlV~ThN~~  198 (454)
                      +.++|.++.+.|. ||++||+..
T Consensus       173 l~~~l~~l~~~g~tvii~tH~~~  195 (491)
T PRK10982        173 LFTIIRKLKERGCGIVYISHKME  195 (491)
T ss_pred             HHHHHHHHHhCCCEEEEEecCHH
Confidence            9999999987776 999999854

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.58  E-value=5.4e-15  Score=141.65  Aligned_cols=146  Identities=15%  Similarity=0.128  Sum_probs=91.3

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS  118 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~  118 (454)
                      ...+++-++|+|+||||||||+++|+|..++ ..  +.+.++........ .   .....+..|+.+++...........
T Consensus        44 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-~~--G~i~~~g~~~~~~~-~---~~~~~~~~tv~enl~~~~~~~~~~~  116 (224)
T cd03220          44 EVPRGERIGLIGRNGAGKSTLLRLLAGIYPP-DS--GTVTVRGRVSSLLG-L---GGGFNPELTGRENIYLNGRLLGLSR  116 (224)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-Cc--eEEEECCEEchhhc-c---cccCCCCCcHHHHHHHHHHHcCCCH
Confidence            3456788999999999999999999998864 23  44444332111000 0   0012234566666522111000111


Q ss_pred             ----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh
Q 012882          119 ----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS  186 (454)
Q Consensus       119 ----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~  186 (454)
                          ...+.++..+++..      ........+++++       ++++.+|++|+||||+ ++|+.++..+.++|..+.+
T Consensus       117 ~~~~~~~~~~l~~~~l~~------~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~  190 (224)
T cd03220         117 KEIDEKIDEIIEFSELGD------FIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLK  190 (224)
T ss_pred             HHHHHHHHHHHHHcCChh------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence                12333444434322      1122234455554       6888999999999999 8999999999999999987


Q ss_pred             CCc-EEEEecCC
Q 012882          187 TGT-VLVATSNR  197 (454)
Q Consensus       187 ~G~-vlV~ThN~  197 (454)
                      +|. ||++||+.
T Consensus       191 ~~~tiii~sH~~  202 (224)
T cd03220         191 QGKTVILVSHDP  202 (224)
T ss_pred             CCCEEEEEeCCH
Confidence            766 88999984

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.58  E-value=2.6e-15  Score=160.55  Aligned_cols=151  Identities=19%  Similarity=0.183  Sum_probs=100.2

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-------HHHHHHHHHHHhhh-----hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-------MLKINEHMHRLWKN-----QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-------~~~~~~~i~~~~~~-----~~~~~t~~e~l  107 (454)
                      ...++-++|+|+||||||||+++|+|.++++..  +.+.+++.       .......++++.|.     ....+|+.+++
T Consensus       285 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~--G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l  362 (506)
T PRK13549        285 LRRGEILGIAGLVGAGRTELVQCLFGAYPGRWE--GEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNI  362 (506)
T ss_pred             EcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCC--cEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHh
Confidence            456677999999999999999999999863123  34444321       11223346666665     23456777777


Q ss_pred             hcccc-CC---C-CCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCC
Q 012882          108 SGWIT-NL---P-FDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVD  170 (454)
Q Consensus       108 ~~~~~-~~---~-~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD  170 (454)
                      ..... ..   . .+.    ..+++++..+++..     .........+++++       +||+.+|+||+||||+ ++|
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD  437 (506)
T PRK13549        363 TLAALDRFTGGSRIDDAAELKTILESIQRLKVKT-----ASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGID  437 (506)
T ss_pred             hhhhhhhhccCcccChHHHHHHHHHHHHhcCccC-----CCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcC
Confidence            32211 01   0 111    23455566655521     11223345566665       6888999999999999 899


Q ss_pred             HHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          171 VFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       171 ~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      +..+..+.++|..+.++|. ||++||+.
T Consensus       438 ~~~~~~l~~~l~~l~~~g~tvi~~sHd~  465 (506)
T PRK13549        438 VGAKYEIYKLINQLVQQGVAIIVISSEL  465 (506)
T ss_pred             HhHHHHHHHHHHHHHHCCCEEEEECCCH
Confidence            9999999999999988887 99999984

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.58  E-value=2.4e-15  Score=160.56  Aligned_cols=150  Identities=17%  Similarity=0.172  Sum_probs=99.0

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-------HHHHHHHHHHHhhh-----hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-------MLKINEHMHRLWKN-----QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-------~~~~~~~i~~~~~~-----~~~~~t~~e~l  107 (454)
                      ..+++-++|+||||||||||+++|+|..++ ..+  .+.+.+.       .......+.+++|.     .....|+.+++
T Consensus       276 i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p-~~G--~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l  352 (501)
T PRK11288        276 VRAGEIVGLFGLVGAGRSELMKLLYGATRR-TAG--QVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNI  352 (501)
T ss_pred             EeCCcEEEEEcCCCCCHHHHHHHHcCCCcC-CCc--eEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHh
Confidence            356677999999999999999999999874 233  4443321       11222345566554     34446777776


Q ss_pred             hccccCC----C--CCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CC
Q 012882          108 SGWITNL----P--FDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TV  169 (454)
Q Consensus       108 ~~~~~~~----~--~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~l  169 (454)
                      .......    .  ...    ..+++++..+++..     +........+++++       ++|+.+|+||+||||+ ++
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~L  427 (501)
T PRK11288        353 NISARRHHLRAGCLINNRWEAENADRFIRSLNIKT-----PSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGI  427 (501)
T ss_pred             ccccchhhcccccccChHHHHHHHHHHHHhcCccc-----CCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCC
Confidence            3211100    0  011    23445555555521     11222344555554       6888999999999999 89


Q ss_pred             CHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          170 DVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       170 D~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      |+..+..+.++|.++.++|. ||++|||.
T Consensus       428 D~~~~~~l~~~l~~l~~~g~tviivsHd~  456 (501)
T PRK11288        428 DVGAKHEIYNVIYELAAQGVAVLFVSSDL  456 (501)
T ss_pred             CHhHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence            99999999999999988877 99999985

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.58  E-value=4e-15  Score=158.41  Aligned_cols=148  Identities=16%  Similarity=0.166  Sum_probs=94.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhhhhc----------ccchhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKNQVA----------EKSLRS  105 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~~~~----------~~t~~e  105 (454)
                      ..+++-++|+||||||||||+++|+|.+++ ..|...+......    ....+.++++.|....          .+++.+
T Consensus        26 i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p-~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~  104 (490)
T PRK10938         26 LNAGDSWAFVGANGSGKSALARALAGELPL-LSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAE  104 (490)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHH
Confidence            356788999999999999999999999874 2343332221110    1222335555443110          123333


Q ss_pred             hhhccccCCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882          106 SISGWITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL  177 (454)
Q Consensus       106 ~l~~~~~~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L  177 (454)
                      ++...    ......++.++..+++...      .......+++++       +||+.+|++|+||||+ +||+..+..+
T Consensus       105 ~~~~~----~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l  174 (490)
T PRK10938        105 IIQDE----VKDPARCEQLAQQFGITAL------LDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQL  174 (490)
T ss_pred             hcccc----hhHHHHHHHHHHHcCCHhh------hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH
Confidence            32110    0112344555666555321      122334555554       6888999999999999 8999999999


Q ss_pred             HHHHHHHHhCCc-EEEEecCCC
Q 012882          178 SGIVSRLLSTGT-VLVATSNRA  198 (454)
Q Consensus       178 ~~ll~~L~~~G~-vlV~ThN~~  198 (454)
                      .++|.++.++|. ||++||+..
T Consensus       175 ~~~l~~~~~~g~tvii~tH~~~  196 (490)
T PRK10938        175 AELLASLHQSGITLVLVLNRFD  196 (490)
T ss_pred             HHHHHHHHhcCCeEEEEeCCHH
Confidence            999999987776 899999854

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.58  E-value=2.9e-15  Score=146.38  Aligned_cols=152  Identities=13%  Similarity=0.138  Sum_probs=91.3

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEech-----hH----HH----HHHHHHHHhhhh----hcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE-----AM----LK----INEHMHRLWKNQ----VAEKS  102 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~-----f~----~~----~~~~i~~~~~~~----~~~~t  102 (454)
                      ..+++-++|.|+||||||||+++|+|.+++ ..|...+....     ..    ..    ....++++.+..    ....+
T Consensus        29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~  107 (258)
T PRK11701         29 LYPGEVLGIVGESGSGKTTLLNALSARLAP-DAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVS  107 (258)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCcccc
Confidence            356788999999999999999999999874 23433332221     11    01    112244554432    11234


Q ss_pred             hhhhhhcccc--CC-CCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CC
Q 012882          103 LRSSISGWIT--NL-PFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TV  169 (454)
Q Consensus       103 ~~e~l~~~~~--~~-~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~l  169 (454)
                      +.+++.....  .. ...  ...+.+++..+++..     .........+++++       +||+.+|+||+||||+ ++
T Consensus       108 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~L  182 (258)
T PRK11701        108 AGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA-----ARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGL  182 (258)
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh-----hHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence            4444321110  00 000  122334444444421     01112233444443       6888999999999999 89


Q ss_pred             CHHHHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          170 DVFAIVALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       170 D~~~a~~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      |+.....+.+++..+.+. |. +|++||+.
T Consensus       183 D~~~~~~l~~~l~~~~~~~~~tii~isH~~  212 (258)
T PRK11701        183 DVSVQARLLDLLRGLVRELGLAVVIVTHDL  212 (258)
T ss_pred             CHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence            999999999999998764 66 89999985

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.58  E-value=2.7e-15  Score=160.11  Aligned_cols=151  Identities=18%  Similarity=0.190  Sum_probs=99.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-------HHHHHHHHHHHhhh-----hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-------MLKINEHMHRLWKN-----QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-------~~~~~~~i~~~~~~-----~~~~~t~~e~l  107 (454)
                      ...+.-++|+||||||||||+++|+|.++++..  +.+.+++.       .....+.++++.|+     ..+.+|+.+++
T Consensus       283 i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~--G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~  360 (500)
T TIGR02633       283 LRRGEILGVAGLVGAGRTELVQALFGAYPGKFE--GNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNI  360 (500)
T ss_pred             EeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCC--eEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHh
Confidence            345677999999999999999999999863223  44444321       11223445666665     23446777776


Q ss_pred             hcc-ccCC----CCC-h---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCC
Q 012882          108 SGW-ITNL----PFD-S---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVD  170 (454)
Q Consensus       108 ~~~-~~~~----~~~-~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD  170 (454)
                      ... ....    ... .   ..+++++..+++..     .........+++++       ++|+.+|+||+||||+ +||
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD  435 (500)
T TIGR02633       361 TLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT-----ASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVD  435 (500)
T ss_pred             cchhhhhhccCCcCCHHHHHHHHHHHHHhcCccC-----CCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcC
Confidence            321 1101    111 1   23455666665521     01122334555554       6888999999999999 899


Q ss_pred             HHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          171 VFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       171 ~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      +..+..+.+++..+.++|. ||++||+.
T Consensus       436 ~~~~~~l~~~l~~l~~~g~tviivsHd~  463 (500)
T TIGR02633       436 VGAKYEIYKLINQLAQEGVAIIVVSSEL  463 (500)
T ss_pred             HhHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence            9999999999999988877 99999984

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.58  E-value=2e-15  Score=161.44  Aligned_cols=150  Identities=15%  Similarity=0.119  Sum_probs=100.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEech--hH----HH-HHHHHHHHhhh--hhcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE--AM----LK-INEHMHRLWKN--QVAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~--f~----~~-~~~~i~~~~~~--~~~~~t~~e~l~~~  110 (454)
                      ..+++-++|+||||||||||+++|+|..++ ..|  .+.+.+  ..    .. .+..++++.|.  ....+|+.+++...
T Consensus        28 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p-~~G--~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~  104 (510)
T PRK09700         28 VYPGEIHALLGENGAGKSTLMKVLSGIHEP-TKG--TITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIG  104 (510)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHcCCcCC-Ccc--EEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhc
Confidence            346777999999999999999999999864 233  444332  10    11 12235566555  34556787777322


Q ss_pred             cc------CCC-CCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCH
Q 012882          111 IT------NLP-FDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDV  171 (454)
Q Consensus       111 ~~------~~~-~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~  171 (454)
                      ..      ... .+.    ..+++++..+++..      ........+++++       ++|+.+|+||+||||+ +||+
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~------~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~  178 (510)
T PRK09700        105 RHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV------DLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTN  178 (510)
T ss_pred             cccccccccccccCHHHHHHHHHHHHHHcCCCC------CcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence            11      110 011    23444555555521      1233445566665       6889999999999999 8999


Q ss_pred             HHHHHHHHHHHHHHhCCc-EEEEecCCC
Q 012882          172 FAIVALSGIVSRLLSTGT-VLVATSNRA  198 (454)
Q Consensus       172 ~~a~~L~~ll~~L~~~G~-vlV~ThN~~  198 (454)
                      ..+..+.++|.++.++|. ||++||+..
T Consensus       179 ~~~~~l~~~l~~l~~~g~tiiivsHd~~  206 (510)
T PRK09700        179 KEVDYLFLIMNQLRKEGTAIVYISHKLA  206 (510)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            999999999999988777 999999854

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.58  E-value=3.8e-15  Score=145.59  Aligned_cols=154  Identities=14%  Similarity=0.162  Sum_probs=93.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc--cCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~--~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l  107 (454)
                      ..++.-++|+|+||||||||+++|+|..++..  ...+.+.+.+..        ....+.++++.+.  ... .|+.+++
T Consensus        35 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl  113 (258)
T PRK14268         35 IPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNV  113 (258)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHH
Confidence            35677899999999999999999999875310  123444443211        1223345555554  222 5666666


Q ss_pred             hccccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          108 SGWITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       108 ~~~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      ...........    ..+++++..+++....  ...+......+++++       +||+.+|+||+||||+ ++|+.++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~  191 (258)
T PRK14268        114 AYGPRIHGANKKDLDGVVENALRSAALWDET--SDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTA  191 (258)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHcCCCcch--hhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHH
Confidence            22111001111    1233444444331100  001112233445444       6889999999999999 89999999


Q ss_pred             HHHHHHHHHHhCCc-EEEEecCC
Q 012882          176 ALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       176 ~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      .+.++|.++.+ |. +|++||+.
T Consensus       192 ~l~~~l~~l~~-~~tiiivsH~~  213 (258)
T PRK14268        192 RIEDLIMNLKK-DYTIVIVTHNM  213 (258)
T ss_pred             HHHHHHHHHhh-CCEEEEEECCH
Confidence            99999999965 55 89999984

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.58  E-value=2.6e-15  Score=146.21  Aligned_cols=156  Identities=13%  Similarity=0.175  Sum_probs=95.7

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCC--CcccCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE--GIVKHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~--~~~~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l  107 (454)
                      ..++.-++|+|+||||||||+++|+|.++  +.....+.+.+.+..        ....+.+.++.+.  .....|+.+++
T Consensus        27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl  106 (252)
T PRK14256         27 FPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNV  106 (252)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHH
Confidence            45678899999999999999999999874  210123445543311        1223445555554  34446777766


Q ss_pred             hcccc--CCC-CC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882          108 SGWIT--NLP-FD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI  174 (454)
Q Consensus       108 ~~~~~--~~~-~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a  174 (454)
                      .....  ... ..  ....++++..+++....  .+........+++++       ++|+.+|++|+||||+ ++|+.++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~  184 (252)
T PRK14256        107 IAGYKLNGRVNRSEADEIVESSLKRVALWDEV--KDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPIST  184 (252)
T ss_pred             HhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh--hHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence            32111  111 11  12334444444432100  001111223344443       6888999999999999 8999999


Q ss_pred             HHHHHHHHHHHhCCcEEEEecCC
Q 012882          175 VALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       175 ~~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      ..+.++|.++.+..+||++||+.
T Consensus       185 ~~l~~~l~~~~~~~tiiivsH~~  207 (252)
T PRK14256        185 LKIEELIEELKEKYTIIIVTHNM  207 (252)
T ss_pred             HHHHHHHHHHHhCCcEEEEECCH
Confidence            99999999997654599999984

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.58  E-value=4.5e-15  Score=144.48  Aligned_cols=156  Identities=17%  Similarity=0.214  Sum_probs=95.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc--cCceEEEechh--------HHHHHHHHHHHhhh--hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEA--------MLKINEHMHRLWKN--QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~--~~k~rv~f~~f--------~~~~~~~i~~~~~~--~~~~~t~~e~l  107 (454)
                      ..+++-++|+||||||||||+++|+|.+++..  ...+.+.+++.        .......+.++.|.  .....|+.+++
T Consensus        27 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl  106 (253)
T PRK14267         27 IPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNV  106 (253)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHH
Confidence            35678899999999999999999999986420  11344444321        11223445555554  33446777776


Q ss_pred             hccc--cCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHH
Q 012882          108 SGWI--TNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFA  173 (454)
Q Consensus       108 ~~~~--~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~  173 (454)
                      ....  .......    ..++.++..+++....  ..........+++++       +||+.+|++|+||||+ ++|+..
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~  184 (253)
T PRK14267        107 AIGVKLNGLVKSKKELDERVEWALKKAALWDEV--KDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVG  184 (253)
T ss_pred             HHHHHhcCccCCHHHHHHHHHHHHHHcCCccch--hhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence            3211  1111111    2233444444331100  001122234455444       6888999999999999 899999


Q ss_pred             HHHHHHHHHHHHhCCcEEEEecCC
Q 012882          174 IVALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       174 a~~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      +..+.++|.++.+..++|++||+.
T Consensus       185 ~~~l~~~l~~~~~~~tiii~sH~~  208 (253)
T PRK14267        185 TAKIEELLFELKKEYTIVLVTHSP  208 (253)
T ss_pred             HHHHHHHHHHHhhCCEEEEEECCH
Confidence            999999999996543499999984

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.57  E-value=3.6e-15  Score=145.76  Aligned_cols=156  Identities=15%  Similarity=0.186  Sum_probs=94.9

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc--cCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~--~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l  107 (454)
                      ..++.-++|+|+||||||||+++|+|..++..  ...+.|.+.+.-        ......++++.+.  .....|+.+++
T Consensus        27 i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl  106 (258)
T PRK14241         27 IEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNV  106 (258)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHH
Confidence            34677899999999999999999999875310  123455553311        1223345555554  23446777776


Q ss_pred             hcccc--CC-CCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882          108 SGWIT--NL-PFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI  174 (454)
Q Consensus       108 ~~~~~--~~-~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a  174 (454)
                      .....  .. ...  .+.+++++..+++...  ...........+++++       +||+.+|++|+||||+ ++|+.++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~  184 (258)
T PRK14241        107 VAGLKLNGVRNKKDLDELVEKSLRGANLWNE--VKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPIST  184 (258)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHcCCchh--hhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence            32111  11 111  1233444444443110  0011112233444443       6888999999999999 8999999


Q ss_pred             HHHHHHHHHHHhCCcEEEEecCC
Q 012882          175 VALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       175 ~~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      ..+.++|.++.+..++|++||+.
T Consensus       185 ~~l~~~l~~~~~~~tviivsH~~  207 (258)
T PRK14241        185 LAIEDLINELKQDYTIVIVTHNM  207 (258)
T ss_pred             HHHHHHHHHHhcCCEEEEEecCH
Confidence            99999999996533489999984

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.57  E-value=2.1e-14  Score=134.30  Aligned_cols=127  Identities=18%  Similarity=0.147  Sum_probs=80.9

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH--HHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM--LKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS  118 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~--~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~  118 (454)
                      .+++-++|+||||||||||+++|+|..+.. ...+.+.+.+..  ......+.++.+.              . ......
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~~~G~i~~~g~~~~~~~~~~i~~~~q~--------------~-~~~~~~   94 (192)
T cd03232          31 KPGTLTALMGESGAGKTTLLDVLAGRKTAG-VITGEILINGRPLDKNFQRSTGYVEQQ--------------D-VHSPNL   94 (192)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhCCCcCC-CcceEEEECCEehHHHhhhceEEeccc--------------C-ccccCC
Confidence            467889999999999999999999975310 123455554321  1111222222221              1 111122


Q ss_pred             HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-
Q 012882          119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-  189 (454)
Q Consensus       119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-  189 (454)
                      +..+++......              +.+++++       +|++.+|++|++|||+ ++|+..+..+.+++.++.+.|. 
T Consensus        95 tv~~~l~~~~~~--------------~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~t  160 (192)
T cd03232          95 TVREALRFSALL--------------RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQA  160 (192)
T ss_pred             cHHHHHHHHHHH--------------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCE
Confidence            444444321110              0223222       5667999999999999 8999999999999999987776 


Q ss_pred             EEEEecCC
Q 012882          190 VLVATSNR  197 (454)
Q Consensus       190 vlV~ThN~  197 (454)
                      +|++||+.
T Consensus       161 iiivtH~~  168 (192)
T cd03232         161 ILCTIHQP  168 (192)
T ss_pred             EEEEEcCC
Confidence            88888884

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.57  E-value=4.6e-15  Score=143.07  Aligned_cols=150  Identities=15%  Similarity=0.112  Sum_probs=93.8

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH--HHHHHHHHHhhh--hhcccchhhhhhccccCC--
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML--KINEHMHRLWKN--QVAEKSLRSSISGWITNL--  114 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~--~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~--  114 (454)
                      .+++-++|+|+||||||||+++|+|..++ ..|...+.......  ...+.+.++.+.  .....++.+++.......  
T Consensus        23 ~~Ge~~~i~G~nG~GKStLl~~l~G~~~p-~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~  101 (235)
T cd03299          23 ERGDYFVILGPTGSGKSVLLETIAGFIKP-DSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKV  101 (235)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCC
Confidence            46788999999999999999999998874 23433333221110  112344555444  233456666652111111  


Q ss_pred             CCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHH
Q 012882          115 PFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRL  184 (454)
Q Consensus       115 ~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L  184 (454)
                      ...  ...+.+++..+++...      +......+++++       +|++.+|++|+||||+ ++|+.++..+.+++..+
T Consensus       102 ~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~  175 (235)
T cd03299         102 DKKEIERKVLEIAEMLGIDHL------LNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKI  175 (235)
T ss_pred             CHHHHHHHHHHHHHHcCChhH------HhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHH
Confidence            111  1223344544544321      122223444443       6888999999999999 89999999999999998


Q ss_pred             HhC-Cc-EEEEecCC
Q 012882          185 LST-GT-VLVATSNR  197 (454)
Q Consensus       185 ~~~-G~-vlV~ThN~  197 (454)
                      ..+ |. +|++||+.
T Consensus       176 ~~~~~~tili~tH~~  190 (235)
T cd03299         176 RKEFGVTVLHVTHDF  190 (235)
T ss_pred             HHhcCCEEEEEecCH
Confidence            764 76 88889874

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.57  E-value=4.8e-15  Score=158.25  Aligned_cols=151  Identities=15%  Similarity=0.124  Sum_probs=100.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-------HHHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-------MLKINEHMHRLWKN--QVAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-------~~~~~~~i~~~~~~--~~~~~t~~e~l~~~  110 (454)
                      ..++.-++|+|+||||||||+++|+|..++ ..|  .+.+++.       ....+..++++.|.  ....+|+.+++...
T Consensus        27 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G--~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~  103 (501)
T PRK11288         27 CRAGQVHALMGENGAGKSTLLKILSGNYQP-DAG--SILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLG  103 (501)
T ss_pred             EeCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCC--EEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhc
Confidence            345677999999999999999999999864 234  4444321       11123345555554  34456787777322


Q ss_pred             cc--CCC-CCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          111 IT--NLP-FDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       111 ~~--~~~-~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      ..  ... .+.    ..++.++..+++..      ........+++++       ++|+.+|+||+||||+ +||+..+.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~  177 (501)
T PRK11288        104 QLPHKGGIVNRRLLNYEAREQLEHLGVDI------DPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIE  177 (501)
T ss_pred             ccccccCCCCHHHHHHHHHHHHHHcCCCC------CcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHH
Confidence            11  001 111    23444555555521      1122344566665       6888999999999999 89999999


Q ss_pred             HHHHHHHHHHhCCc-EEEEecCCCc
Q 012882          176 ALSGIVSRLLSTGT-VLVATSNRAP  199 (454)
Q Consensus       176 ~L~~ll~~L~~~G~-vlV~ThN~~P  199 (454)
                      .+.++|.++.++|. ||++||+...
T Consensus       178 ~l~~~l~~~~~~g~tiiiitHd~~~  202 (501)
T PRK11288        178 QLFRVIRELRAEGRVILYVSHRMEE  202 (501)
T ss_pred             HHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            99999999987776 9999998643

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.57  E-value=6.3e-15  Score=141.01  Aligned_cols=151  Identities=15%  Similarity=0.118  Sum_probs=90.2

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HHHHHHHHHHhhhh-hcccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LKINEHMHRLWKNQ-VAEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~  112 (454)
                      ..++.-++|+||||||||||+++|+|.+++. .  +.+.+++..      ......+.++.+.. ....|+.+++.....
T Consensus        37 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~--G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~  113 (226)
T cd03248          37 LHPGEVTALVGPSGSGKSTVVALLENFYQPQ-G--GQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQ  113 (226)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCcCCC-C--cEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHhccccC
Confidence            3567889999999999999999999998742 3  345544321      12233445554441 112366666532211


Q ss_pred             CCCCCh--HH-----HHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882          113 NLPFDS--KV-----MEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL  177 (454)
Q Consensus       113 ~~~~~~--~~-----~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L  177 (454)
                      ......  ..     .+.++..+..    +....+......+++++       ++|+.+|++|+||||+ ++|+..+..+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~l~~l~~----gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l  189 (226)
T cd03248         114 SCSFECVKEAAQKAHAHSFISELAS----GYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQV  189 (226)
T ss_pred             CCCHHHHHHHHHHcCcHHHHHhccc----cccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence            111000  00     0111121100    01111122233344443       6889999999999999 8999999999


Q ss_pred             HHHHHHHHhCCcEEEEecCC
Q 012882          178 SGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       178 ~~ll~~L~~~G~vlV~ThN~  197 (454)
                      .+++.++.+..++|++||+.
T Consensus       190 ~~~l~~~~~~~tii~~sh~~  209 (226)
T cd03248         190 QQALYDWPERRTVLVIAHRL  209 (226)
T ss_pred             HHHHHHHcCCCEEEEEECCH
Confidence            99999987643489999985

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.57  E-value=4.4e-15  Score=158.49  Aligned_cols=152  Identities=15%  Similarity=0.096  Sum_probs=99.8

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-------HHHHHHHHHHhhh--hhcccchhhhhhccc
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-------LKINEHMHRLWKN--QVAEKSLRSSISGWI  111 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-------~~~~~~i~~~~~~--~~~~~t~~e~l~~~~  111 (454)
                      ..++-++|+||||||||||+++|+|.+++. ...+.+.+++..       ......++++.|.  ....+|+.+++....
T Consensus        25 ~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~  103 (500)
T TIGR02633        25 RPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGN  103 (500)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhc
Confidence            456779999999999999999999988641 123444443210       1112345566655  345567777763221


Q ss_pred             cCC----CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          112 TNL----PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       112 ~~~----~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      ...    ....    ..+++++..+++...     ........+++++       +||+.+|+||+||||+ ++|+..+.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~  178 (500)
T TIGR02633       104 EITLPGGRMAYNAMYLRAKNLLRELQLDAD-----NVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETE  178 (500)
T ss_pred             cccccccccCHHHHHHHHHHHHHHcCCCCC-----cccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Confidence            100    0111    234455555554211     0112244566665       6889999999999999 89999999


Q ss_pred             HHHHHHHHHHhCCc-EEEEecCCC
Q 012882          176 ALSGIVSRLLSTGT-VLVATSNRA  198 (454)
Q Consensus       176 ~L~~ll~~L~~~G~-vlV~ThN~~  198 (454)
                      .+.++|.++.++|. ||++||+..
T Consensus       179 ~l~~~l~~l~~~g~tviiitHd~~  202 (500)
T TIGR02633       179 ILLDIIRDLKAHGVACVYISHKLN  202 (500)
T ss_pred             HHHHHHHHHHhCCCEEEEEeCcHH
Confidence            99999999988887 999999854

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.57  E-value=6e-15  Score=145.53  Aligned_cols=152  Identities=15%  Similarity=0.053  Sum_probs=96.3

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc-----cCceEEEechhH------HHHHHHHHHHhhhh--hcccchhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV-----KHRQRFHFHEAM------LKINEHMHRLWKNQ--VAEKSLRSS  106 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~-----~~k~rv~f~~f~------~~~~~~i~~~~~~~--~~~~t~~e~  106 (454)
                      ..+++-++|+|+||||||||+++|+|.+++..     ...+.+.+++..      ......+.++.|..  ....|+.++
T Consensus        24 i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~  103 (272)
T PRK13547         24 IEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREI  103 (272)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHH
Confidence            35678899999999999999999999986420     003455554321      12233445555542  234678787


Q ss_pred             hhccccCC-----CCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhc---------cCCcEEE
Q 012882          107 ISGWITNL-----PFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQ---------RGASILC  162 (454)
Q Consensus       107 l~~~~~~~-----~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~---------~~p~lL~  162 (454)
                      +.......     ...   ...++.++..+++....      ......+++++       ++|+         .+|++|+
T Consensus       104 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lll  177 (272)
T PRK13547        104 VLLGRYPHARRAGALTHRDGEIAWQALALAGATALV------GRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLL  177 (272)
T ss_pred             HhhcccccccccccCCHHHHHHHHHHHHHcCcHhhh------cCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEE
Confidence            73221110     011   12344555555553211      11123344443       5777         4999999


Q ss_pred             eeCCC-CCCHHHHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          163 FDEIQ-TVDVFAIVALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       163 LDEp~-~lD~~~a~~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      ||||+ ++|+..+..+.++|.++.+. |. +|++||+.
T Consensus       178 LDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~  215 (272)
T PRK13547        178 LDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP  215 (272)
T ss_pred             EcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence            99999 89999999999999999765 66 88888874

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=1.6e-14  Score=151.35  Aligned_cols=170  Identities=16%  Similarity=0.106  Sum_probs=116.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh-hhcccchhhhhhccccCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN-QVAEKSLRSSISGWITNL  114 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~  114 (454)
                      .++++-+.|+|++|||||||+++|.|.+++ ..|..++...+..    ...++.+.++.|+ .....|+++|+.....  
T Consensus       344 ~~~g~~talvG~SGaGKSTLl~lL~G~~~~-~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~--  420 (559)
T COG4988         344 IKAGQLTALVGASGAGKSTLLNLLLGFLAP-TQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARP--  420 (559)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHhCcCCC-CCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCC--
Confidence            356777999999999999999999999985 3555555443321    2456777777776 3344577888732211  


Q ss_pred             CCChHHHHHHHHHHhhhhHHhh----cchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882          115 PFDSKVMEWVAAEEKYKQEVQM----KNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS  182 (454)
Q Consensus       115 ~~~~~~~e~ll~~~~l~~~~~~----~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~  182 (454)
                      ..+.+...+.++..++.+..+.    +..+.+-...+++++       |||.++++|++||||| ++|+.+..++.+.+.
T Consensus       421 ~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~  500 (559)
T COG4988         421 DASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQ  500 (559)
T ss_pred             cCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHH
Confidence            1334555556665555443221    112222222355554       7999999999999999 899999999999999


Q ss_pred             HHHhCCcEEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCc
Q 012882          183 RLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSE  231 (454)
Q Consensus       183 ~L~~~G~vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~  231 (454)
                      ++.+..+|+++||..                   ..+++.-+|+.++.+
T Consensus       501 ~l~~~ktvl~itHrl-------------------~~~~~~D~I~vld~G  530 (559)
T COG4988         501 ELAKQKTVLVITHRL-------------------EDAADADRIVVLDNG  530 (559)
T ss_pred             HHHhCCeEEEEEcCh-------------------HHHhcCCEEEEecCC
Confidence            999887799999963                   345555666667655

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.57  E-value=2.4e-15  Score=178.87  Aligned_cols=159  Identities=13%  Similarity=0.102  Sum_probs=109.2

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---HHHHHHHHHHHhhh--hhcccchhhhhhc--ccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---MLKINEHMHRLWKN--QVAEKSLRSSISG--WIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---~~~~~~~i~~~~~~--~~~~~t~~e~l~~--~~~  112 (454)
                      ...++-++|+|+||||||||+++|+|.++| ..|...+..+..   +...++.+++++|.  ....+|+.+++..  ...
T Consensus       953 I~~Gei~aLLG~NGAGKSTLLkiLaGLl~P-tsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk 1031 (2272)
T TIGR01257       953 FYENQITAFLGHNGAGKTTTLSILTGLLPP-TSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK 1031 (2272)
T ss_pred             EcCCcEEEEECCCCChHHHHHHHHhcCCCC-CceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc
Confidence            345677999999999999999999999875 244444433221   22344556666665  4566788888722  222


Q ss_pred             CCCCCh--HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882          113 NLPFDS--KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS  182 (454)
Q Consensus       113 ~~~~~~--~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~  182 (454)
                      +.....  ..+++++..+++..      .....+..+++++       +||+.+|+||+||||+ ++|+..+..++++|.
T Consensus      1032 g~~~~~~~~~v~~lL~~vgL~~------~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~ 1105 (2272)
T TIGR01257      1032 GRSWEEAQLEMEAMLEDTGLHH------KRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLL 1105 (2272)
T ss_pred             CCCHHHHHHHHHHHHHHcCCch------hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHH
Confidence            222111  33455666666532      2233455666665       6899999999999999 899999999999999


Q ss_pred             HHHhCCc-EEEEecCCCccchhcCC
Q 012882          183 RLLSTGT-VLVATSNRAPWDLNQDG  206 (454)
Q Consensus       183 ~L~~~G~-vlV~ThN~~P~dLy~~~  206 (454)
                      ++. +|+ ||++||+....+.++++
T Consensus      1106 ~l~-~g~TIIltTHdmdea~~laDr 1129 (2272)
T TIGR01257      1106 KYR-SGRTIIMSTHHMDEADLLGDR 1129 (2272)
T ss_pred             HHh-CCCEEEEEECCHHHHHHhCCE
Confidence            995 466 99999987655555544

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.57  E-value=8.2e-15  Score=135.32  Aligned_cols=126  Identities=17%  Similarity=0.183  Sum_probs=78.4

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH-H----HHHHHHHHhhhhhcccchhhhhhccccCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML-K----INEHMHRLWKNQVAEKSLRSSISGWITNL  114 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~-~----~~~~i~~~~~~~~~~~t~~e~l~~~~~~~  114 (454)
                      ..+++-++|.|+||||||||+++|+|..++ ..  +.+.+++... .    ....+.++              ++...  
T Consensus        25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~--G~i~~~g~~~~~~~~~~~~~i~~~--------------~q~~~--   85 (178)
T cd03247          25 LKQGEKIALLGRSGSGKSTLLQLLTGDLKP-QQ--GEITLDGVPVSDLEKALSSLISVL--------------NQRPY--   85 (178)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccCCC-CC--CEEEECCEEHHHHHHHHHhhEEEE--------------ccCCe--
Confidence            356788999999999999999999999874 23  3454443211 1    11111222              22111  


Q ss_pred             CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEE
Q 012882          115 PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLV  192 (454)
Q Consensus       115 ~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV  192 (454)
                      .+..++.+++...+..     .......+|       +|++.+|++|+||||+ ++|+..+..+.+++.++.+ |. +|+
T Consensus        86 ~~~~tv~~~i~~~LS~-----G~~qrv~la-------ral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~  152 (178)
T cd03247          86 LFDTTLRNNLGRRFSG-----GERQRLALA-------RILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK-DKTLIW  152 (178)
T ss_pred             eecccHHHhhcccCCH-----HHHHHHHHH-------HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEE
Confidence            1122344443111110     000112223       4566999999999999 8999999999999999864 55 889


Q ss_pred             EecCC
Q 012882          193 ATSNR  197 (454)
Q Consensus       193 ~ThN~  197 (454)
                      +||+.
T Consensus       153 ~sh~~  157 (178)
T cd03247         153 ITHHL  157 (178)
T ss_pred             EecCH
Confidence            99985

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.57  E-value=4.9e-15  Score=144.00  Aligned_cols=155  Identities=18%  Similarity=0.217  Sum_probs=96.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCc--ccCceEEEechh------HHHHHHHHHHHhhh--hhcccchhhhhhc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGI--VKHRQRFHFHEA------MLKINEHMHRLWKN--QVAEKSLRSSISG  109 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~--~~~k~rv~f~~f------~~~~~~~i~~~~~~--~~~~~t~~e~l~~  109 (454)
                      ..+++-++|+|+||||||||+++|+|..++.  ....+.+.+.+.      .......++++.|.  .....|+.+++..
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~  105 (250)
T PRK14247         26 IPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVAL  105 (250)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHH
Confidence            3567889999999999999999999988531  012345555432      11233455666655  2445677777632


Q ss_pred             cc--cCCCCC-h---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          110 WI--TNLPFD-S---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       110 ~~--~~~~~~-~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      ..  ...... .   ..+++++..+++....  ...+......+++++       +||+.+|+||+||||+ ++|+.++.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~  183 (250)
T PRK14247        106 GLKLNRLVKSKKELQERVRWALEKAQLWDEV--KDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTA  183 (250)
T ss_pred             HHHhccccCCHHHHHHHHHHHHHHcCCCcch--hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence            11  111111 1   2333444444442100  001112233445444       6888999999999999 89999999


Q ss_pred             HHHHHHHHHHhCCc-EEEEecCC
Q 012882          176 ALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       176 ~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      .+.++|.++.+ |. +|++||+.
T Consensus       184 ~l~~~l~~~~~-~~tiii~sH~~  205 (250)
T PRK14247        184 KIESLFLELKK-DMTIVLVTHFP  205 (250)
T ss_pred             HHHHHHHHHhc-CCEEEEEeCCH
Confidence            99999999865 56 88888874

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.57  E-value=3.7e-15  Score=150.94  Aligned_cols=155  Identities=13%  Similarity=0.131  Sum_probs=97.7

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCc-ccCceEEEechhH------HHHH----HHHHHHhhhh----hcccchh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGI-VKHRQRFHFHEAM------LKIN----EHMHRLWKNQ----VAEKSLR  104 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~-~~~k~rv~f~~f~------~~~~----~~i~~~~~~~----~~~~t~~  104 (454)
                      ...++-++|+|+||||||||+++|+|..++. ....+.+.|++.-      ....    +.+.++.|..    .+..++.
T Consensus        30 i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~  109 (330)
T PRK15093         30 LTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVG  109 (330)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHH
Confidence            4567889999999999999999999988521 0123555554321      1111    1344555542    2334555


Q ss_pred             hhhhcccc-----CC-CCC----hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC
Q 012882          105 SSISGWIT-----NL-PFD----SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ  167 (454)
Q Consensus       105 e~l~~~~~-----~~-~~~----~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~  167 (454)
                      +++.....     .. ...    ...+.+++..+++....   +.+......+++++       +||+.+|+||++|||+
T Consensus       110 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~---~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPt  186 (330)
T PRK15093        110 RQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK---DAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPT  186 (330)
T ss_pred             HHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChH---HHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            55422110     00 001    12344555555553210   11122334566665       7999999999999999


Q ss_pred             -CCCHHHHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          168 -TVDVFAIVALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       168 -~lD~~~a~~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                       +||+..+..+.++|.++.++ |. +|++|||.
T Consensus       187 s~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl  219 (330)
T PRK15093        187 NAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL  219 (330)
T ss_pred             CcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence             89999999999999999874 77 99999985

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.57  E-value=5.3e-15  Score=158.63  Aligned_cols=154  Identities=12%  Similarity=0.138  Sum_probs=94.4

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCC--CCcccCceEEEec---------------------h---------h-----
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGAT--EGIVKHRQRFHFH---------------------E---------A-----   82 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l--~~~~~~k~rv~f~---------------------~---------f-----   82 (454)
                      ...+.-++|+||||||||||+++|+|..  ++ ..|...+..+                     +         .     
T Consensus        23 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p-~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~  101 (520)
T TIGR03269        23 IEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP-TSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSD  101 (520)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhhcccCCC-CceEEEEeccccccccccccccccccccccccccccccchhhhccCH
Confidence            3467789999999999999999999986  33 3343333200                     0         0     


Q ss_pred             --HHHHHHHHHHHhhh---hhcccchhhhhhcccc--CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh--
Q 012882           83 --MLKINEHMHRLWKN---QVAEKSLRSSISGWIT--NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ--  151 (454)
Q Consensus        83 --~~~~~~~i~~~~~~---~~~~~t~~e~l~~~~~--~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~--  151 (454)
                        ....++.++++.|.   ....+++.+++.....  .....  ...+++++..+++...      .......+++++  
T Consensus       102 ~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~------~~~~~~~LSgGq~q  175 (520)
T TIGR03269       102 KLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHR------ITHIARDLSGGEKQ  175 (520)
T ss_pred             HHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh------hhcCcccCCHHHHH
Confidence              00112233444442   2233466666522111  11111  1234445555554221      122234455554  


Q ss_pred             -----hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh-CCc-EEEEecCCCcc
Q 012882          152 -----HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS-TGT-VLVATSNRAPW  200 (454)
Q Consensus       152 -----rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~-~G~-vlV~ThN~~P~  200 (454)
                           +||+.+|+||+||||+ +||+..+..+.++|.++.+ .|. ||++||+....
T Consensus       176 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~  232 (520)
T TIGR03269       176 RVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI  232 (520)
T ss_pred             HHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH
Confidence                 6889999999999999 8999999999999999965 476 99999996543

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.57  E-value=4.3e-15  Score=158.65  Aligned_cols=150  Identities=15%  Similarity=0.148  Sum_probs=99.9

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEech--h-----HHHHHHHHHHHhhhh-----hcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE--A-----MLKINEHMHRLWKNQ-----VAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~--f-----~~~~~~~i~~~~~~~-----~~~~t~~e~l  107 (454)
                      ..++.-++|+||||||||||+++|+|.+++. .|  .+.+++  .     ....+..++++.|..     ....|+.+++
T Consensus       275 i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~-~G--~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l  351 (501)
T PRK10762        275 LRKGEILGVSGLMGAGRTELMKVLYGALPRT-SG--YVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENM  351 (501)
T ss_pred             EcCCcEEEEecCCCCCHHHHHHHHhCCCCCC-ce--EEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHh
Confidence            3456779999999999999999999998642 33  444332  1     112233466776652     3456777776


Q ss_pred             hcccc----CC-C-CC----hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CC
Q 012882          108 SGWIT----NL-P-FD----SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TV  169 (454)
Q Consensus       108 ~~~~~----~~-~-~~----~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~l  169 (454)
                      .....    .. . ..    ...+++++..+++..     .........+++++       +||+.+|+||+||||+ +|
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~L  426 (501)
T PRK10762        352 SLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT-----PSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGV  426 (501)
T ss_pred             hhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC-----CCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCC
Confidence            32110    00 0 11    123445555555521     11233345566665       6888999999999999 89


Q ss_pred             CHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          170 DVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       170 D~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      |+..+..+.++|..+.++|. ||++||+.
T Consensus       427 D~~~~~~l~~~l~~~~~~g~tviivtHd~  455 (501)
T PRK10762        427 DVGAKKEIYQLINQFKAEGLSIILVSSEM  455 (501)
T ss_pred             CHhHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            99999999999999987787 99999984

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.57  E-value=5.2e-15  Score=144.72  Aligned_cols=155  Identities=15%  Similarity=0.190  Sum_probs=93.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCC--cccCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEG--IVKHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~--~~~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l  107 (454)
                      ..+++-++|+|+||||||||+++|+|.+++  .....+.+.+.+.-        ......++++.+.  ... .++.+++
T Consensus        35 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl  113 (259)
T PRK14274         35 IPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFP-QSIFDNV  113 (259)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccc-cCHHHHH
Confidence            346778999999999999999999998752  11123455443221        1233445566554  222 3666666


Q ss_pred             hccc--cCCCCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882          108 SGWI--TNLPFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI  174 (454)
Q Consensus       108 ~~~~--~~~~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a  174 (454)
                      ....  .......   ..++.++..+++....  ...+......+++++       ++|+.+|+||+||||+ ++|+.++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~  191 (259)
T PRK14274        114 AYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV--KDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVST  191 (259)
T ss_pred             HhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh--hhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence            2211  1111111   1223334443331100  001111223344443       6888999999999999 8999999


Q ss_pred             HHHHHHHHHHHhCCcEEEEecCC
Q 012882          175 VALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       175 ~~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      ..+.++|.++.+..++|++||+.
T Consensus       192 ~~l~~~l~~~~~~~tiiivtH~~  214 (259)
T PRK14274        192 RKIEELILKLKEKYTIVIVTHNM  214 (259)
T ss_pred             HHHHHHHHHHhcCCEEEEEEcCH
Confidence            99999999997633499999984

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.57  E-value=6e-15  Score=144.39  Aligned_cols=157  Identities=16%  Similarity=0.183  Sum_probs=94.0

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCC--CcccCceEEEech--h------HHHHHHHHHHHhhhh-hcccchhhhh
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE--GIVKHRQRFHFHE--A------MLKINEHMHRLWKNQ-VAEKSLRSSI  107 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~--~~~~~k~rv~f~~--f------~~~~~~~i~~~~~~~-~~~~t~~e~l  107 (454)
                      ...++.-++|+|+||||||||+++|+|..+  +.....+.+.+++  .      .....+.+.++.+.. ....|+.+++
T Consensus        35 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl  114 (260)
T PRK10744         35 DIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNI  114 (260)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCcCcHHHHH
Confidence            345678899999999999999999999874  1101234444432  1      112334455665541 1125666666


Q ss_pred             hccccCC-CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882          108 SGWITNL-PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI  174 (454)
Q Consensus       108 ~~~~~~~-~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a  174 (454)
                      ....... ..+.    ..+++++..+++....  ...+......+++++       +||+.+|+||+||||+ ++|+.++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~  192 (260)
T PRK10744        115 AFGVRLFEKLSRAEMDERVEWALTKAALWNEV--KDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPIST  192 (260)
T ss_pred             hhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh--HHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHH
Confidence            2211100 1111    2334444444431100  001111222344443       6888999999999999 8999999


Q ss_pred             HHHHHHHHHHHhCCcEEEEecCC
Q 012882          175 VALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       175 ~~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      ..+.++|.++.+..++|++||+.
T Consensus       193 ~~l~~~L~~~~~~~tiii~sH~~  215 (260)
T PRK10744        193 GRIEELITELKQDYTVVIVTHNM  215 (260)
T ss_pred             HHHHHHHHHHhcCCeEEEEeCCH
Confidence            99999999996533489999984

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.57  E-value=6.3e-15  Score=143.50  Aligned_cols=150  Identities=15%  Similarity=0.126  Sum_probs=89.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-----------HH----HHHHHHHHhhhhh----cc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-----------LK----INEHMHRLWKNQV----AE  100 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-----------~~----~~~~i~~~~~~~~----~~  100 (454)
                      ..++.-++|+|+||||||||+++|+|..++ ..|  .+.+.+..           ..    ..+.+.++.+...    ..
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G--~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~  102 (253)
T TIGR02323        26 LYPGEVLGIVGESGSGKSTLLGCLAGRLAP-DHG--TATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMR  102 (253)
T ss_pred             EeCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCc--EEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCcc
Confidence            346788999999999999999999999874 244  44433210           00    0112344444311    11


Q ss_pred             cchhhhhhccc--cC-CCC--ChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-
Q 012882          101 KSLRSSISGWI--TN-LPF--DSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-  167 (454)
Q Consensus       101 ~t~~e~l~~~~--~~-~~~--~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-  167 (454)
                      .++.+++....  .. ...  ....++.++..+++..     .........+++++       +||+.+|++|+||||+ 
T Consensus       103 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-----~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~  177 (253)
T TIGR02323       103 VSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP-----TRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTG  177 (253)
T ss_pred             ccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh-----hhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence            23333331110  00 000  0123334444444421     11122334455554       6889999999999999 


Q ss_pred             CCCHHHHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          168 TVDVFAIVALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       168 ~lD~~~a~~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      ++|+.++..+.++|.++.++ |. +|++||+.
T Consensus       178 ~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~  209 (253)
T TIGR02323       178 GLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL  209 (253)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            89999999999999998754 66 88899874

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.57  E-value=9.8e-15  Score=133.99  Aligned_cols=123  Identities=18%  Similarity=0.196  Sum_probs=78.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH------HHHHHHHHHhhhhhcccchhhhhhccccC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML------KINEHMHRLWKNQVAEKSLRSSISGWITN  113 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~------~~~~~i~~~~~~~~~~~t~~e~l~~~~~~  113 (454)
                      ..++.-++|.||||+|||||+++++|..++ ..  +.+.+++...      .....+.              ++++... 
T Consensus        25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~~-~~--G~i~~~g~~~~~~~~~~~~~~i~--------------~~~~~~~-   86 (171)
T cd03228          25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYDP-TS--GEILIDGVDLRDLDLESLRKNIA--------------YVPQDPF-   86 (171)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHcCCCC-CC--CEEEECCEEhhhcCHHHHHhhEE--------------EEcCCch-
Confidence            356788999999999999999999999874 23  3455543211      1111111              1222211 


Q ss_pred             CCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EE
Q 012882          114 LPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VL  191 (454)
Q Consensus       114 ~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vl  191 (454)
                       .++.++.+++     +.+   .......++       ++++.+|++|+||||+ ++|+..+..+.+++.++.+ +. +|
T Consensus        87 -~~~~t~~e~l-----LS~---G~~~rl~la-------~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii  149 (171)
T cd03228          87 -LFSGTIRENI-----LSG---GQRQRIAIA-------RALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVI  149 (171)
T ss_pred             -hccchHHHHh-----hCH---HHHHHHHHH-------HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEE
Confidence             1223444444     110   001112233       3556899999999999 8999999999999999864 55 88


Q ss_pred             EEecCC
Q 012882          192 VATSNR  197 (454)
Q Consensus       192 V~ThN~  197 (454)
                      ++||+.
T Consensus       150 ~~sh~~  155 (171)
T cd03228         150 VIAHRL  155 (171)
T ss_pred             EEecCH
Confidence            888874

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.56  E-value=1.9e-14  Score=134.85  Aligned_cols=133  Identities=17%  Similarity=0.174  Sum_probs=82.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCC--CCcccCceEEEechhHH---HHHHHHHHHhhhhhcccchhhhhhccccCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGAT--EGIVKHRQRFHFHEAML---KINEHMHRLWKNQVAEKSLRSSISGWITNL  114 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l--~~~~~~k~rv~f~~f~~---~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~  114 (454)
                      ..+++-++|+||||||||||+++|+|..  ++ .  .+.+.+.+...   .....+.++.+.              . ..
T Consensus        32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~-~--~G~i~~~g~~~~~~~~~~~i~~~~q~--------------~-~~   93 (194)
T cd03213          32 AKPGELTAIMGPSGAGKSTLLNALAGRRTGLG-V--SGEVLINGRPLDKRSFRKIIGYVPQD--------------D-IL   93 (194)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC-C--ceEEEECCEeCchHhhhheEEEccCc--------------c-cC
Confidence            4567889999999999999999999998  63 2  34555543211   112222222221              1 11


Q ss_pred             CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEE
Q 012882          115 PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLV  192 (454)
Q Consensus       115 ~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV  192 (454)
                      ....+..+++.....+....+.......+|       +||+.+|++|+||||+ ++|+.++..+.++|.++.++|. +|+
T Consensus        94 ~~~~t~~~~i~~~~~~~~LS~G~~qrv~la-------ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii  166 (194)
T cd03213          94 HPTLTVRETLMFAAKLRGLSGGERKRVSIA-------LELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIIC  166 (194)
T ss_pred             CCCCcHHHHHHHHHHhccCCHHHHHHHHHH-------HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence            112244444432211100000000111222       5667999999999999 8999999999999999987777 888


Q ss_pred             EecCC
Q 012882          193 ATSNR  197 (454)
Q Consensus       193 ~ThN~  197 (454)
                      +||+.
T Consensus       167 ~sh~~  171 (194)
T cd03213         167 SIHQP  171 (194)
T ss_pred             EecCc
Confidence            88874

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.56  E-value=5.3e-15  Score=149.58  Aligned_cols=150  Identities=15%  Similarity=0.139  Sum_probs=94.9

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---------HHHHHHHHHHhhh----hhcccchhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---------LKINEHMHRLWKN----QVAEKSLRSS  106 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---------~~~~~~i~~~~~~----~~~~~t~~e~  106 (454)
                      ...++-++|+|+||||||||+++|+|.+++ ..  +.+.+.+.-         ......++++.|.    +.+.+++.++
T Consensus        38 i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p-~~--G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~  114 (327)
T PRK11308         38 LERGKTLAVVGESGCGKSTLARLLTMIETP-TG--GELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQI  114 (327)
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHHcCCCC-CC--cEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHH
Confidence            456788999999999999999999999874 23  344443311         1122334455443    2233444444


Q ss_pred             hhccc---cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHH
Q 012882          107 ISGWI---TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFA  173 (454)
Q Consensus       107 l~~~~---~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~  173 (454)
                      +....   ......  ...+.+++..+++...     .+......+++++       +||+.+|+||++|||+ +||+..
T Consensus       115 l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~  189 (327)
T PRK11308        115 LEEPLLINTSLSAAERREKALAMMAKVGLRPE-----HYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSV  189 (327)
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHCCCChH-----HhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHH
Confidence            42111   011111  1234455555554210     1122233455554       6899999999999999 899999


Q ss_pred             HHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          174 IVALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       174 a~~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      +..+.++|.++.++ |. +|++|||.
T Consensus       190 ~~~i~~lL~~l~~~~g~til~iTHdl  215 (327)
T PRK11308        190 QAQVLNLMMDLQQELGLSYVFISHDL  215 (327)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            99999999999874 76 99999984

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.56  E-value=8.5e-15  Score=134.23  Aligned_cols=165  Identities=16%  Similarity=0.163  Sum_probs=110.8

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhhh--
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSIS--  108 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l~--  108 (454)
                      .++.==.|+||||+||||+||+|.|..+|.   .+++.|+...        .-.+..|+.-.|.  .++.+|+.+|+-  
T Consensus        29 ~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~---~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA  105 (249)
T COG4674          29 DPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELA  105 (249)
T ss_pred             cCCeEEEEECCCCCCceeeeeeecccCCCC---cceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHH
Confidence            455557899999999999999999999753   4677776521        1112223332233  456778888761  


Q ss_pred             c--------cccCCC--CChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCC
Q 012882          109 G--------WITNLP--FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVD  170 (454)
Q Consensus       109 ~--------~~~~~~--~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD  170 (454)
                      .        .+....  ....+++++++..++...      ....|..++-++       .-++++|++|++|||. ++-
T Consensus       106 ~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~------~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMT  179 (249)
T COG4674         106 LNRDKSVFASLFARLRAEERRRIDELLATIGLGDE------RDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMT  179 (249)
T ss_pred             hcCCcchHHHhhhhcChhHHHHHHHHHHHcccchh------hhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCc
Confidence            1        111111  112467777777776432      233444444333       4667999999999999 766


Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCC
Q 012882          171 VFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGS  230 (454)
Q Consensus       171 ~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~  230 (454)
                      -+..+...++|..+...-.|+|+-|++                .|+..|..+.+|++-++
T Consensus       180 d~Et~~taeLl~~la~~hsilVVEHDM----------------~Fvr~~A~~VTVlh~G~  223 (249)
T COG4674         180 DAETEKTAELLKSLAGKHSILVVEHDM----------------GFVREIADKVTVLHEGS  223 (249)
T ss_pred             HHHHHHHHHHHHHHhcCceEEEEeccH----------------HHHHHhhheeEEEeccc
Confidence            677788999999998776699999996                57777888888886654

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=3.4e-14  Score=129.68  Aligned_cols=153  Identities=15%  Similarity=0.070  Sum_probs=103.5

Q ss_pred             CCCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEe---chhHHHHHHHHHHHhhh--hhcccchhhhh-hccc
Q 012882           38 TAPPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHF---HEAMLKINEHMHRLWKN--QVAEKSLRSSI-SGWI  111 (454)
Q Consensus        38 ~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f---~~f~~~~~~~i~~~~~~--~~~~~t~~e~l-~~~~  111 (454)
                      ....++.-++|.||||+|||||+++++|.+.|. .+..++..   +.+....++.++++...  +...+|+.||+ |...
T Consensus        23 f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~-~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~  101 (209)
T COG4133          23 FTLNAGEALQITGPNGAGKTTLLRILAGLLRPD-AGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQR  101 (209)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC-CCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHH
Confidence            345678999999999999999999999999752 33333321   22344466777887544  67788999998 3222


Q ss_pred             cCCCCChHHHHHHHHHHhhhhHHh--------hcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882          112 TNLPFDSKVMEWVAAEEKYKQEVQ--------MKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAIVALSGIVS  182 (454)
Q Consensus       112 ~~~~~~~~~~e~ll~~~~l~~~~~--------~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~  182 (454)
                      ..-.-+.....+.+..+++.+..+        -......+|+.+       +..+++.+||||+ .+|......|..++.
T Consensus       102 ~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~-------ls~~pLWiLDEP~taLDk~g~a~l~~l~~  174 (209)
T COG4133         102 FHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLW-------LSPAPLWILDEPFTALDKEGVALLTALMA  174 (209)
T ss_pred             HhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHH-------cCCCCceeecCcccccCHHHHHHHHHHHH
Confidence            122233444555556666543211        111223344444       4789999999999 899999999999998


Q ss_pred             HHHhCCc-EEEEecCCC
Q 012882          183 RLLSTGT-VLVATSNRA  198 (454)
Q Consensus       183 ~L~~~G~-vlV~ThN~~  198 (454)
                      .-..+|. ||.+||...
T Consensus       175 ~H~~~GGiVllttHq~l  191 (209)
T COG4133         175 AHAAQGGIVLLTTHQPL  191 (209)
T ss_pred             HHhcCCCEEEEecCCcc
Confidence            8887776 777777643

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.56  E-value=1.2e-14  Score=141.31  Aligned_cols=157  Identities=17%  Similarity=0.177  Sum_probs=93.5

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc--cCceEEEechh-------HHHHHHHHHHHhhhh-hcccchhhhhh
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEA-------MLKINEHMHRLWKNQ-VAEKSLRSSIS  108 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~--~~k~rv~f~~f-------~~~~~~~i~~~~~~~-~~~~t~~e~l~  108 (454)
                      ...++.-++|+|+||+|||||+++|+|..++..  ...+.+.+.+.       ....+..+.++.++. ....|+.+++.
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~  104 (249)
T PRK14253         25 PIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVA  104 (249)
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCcccHHHHHH
Confidence            345678899999999999999999999876310  11244444321       123344566666552 11256767663


Q ss_pred             cccc--CCCCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          109 GWIT--NLPFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       109 ~~~~--~~~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      ....  ......   ..+.+.+...++....  ...+......+++++       ++|+.+|+||+||||+ ++|+.++.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~  182 (249)
T PRK14253        105 YGLRAQGIKDKKVLDEVVERSLRGAALWDEV--KDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATH  182 (249)
T ss_pred             hHHHhcCCCchHHHHHHHHHHHHHcCCchhh--hHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHH
Confidence            2111  111111   1222333333321100  001111122344443       6888999999999999 89999999


Q ss_pred             HHHHHHHHHHhCCcEEEEecCC
Q 012882          176 ALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       176 ~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      .+.++|.++.+..++|++||+.
T Consensus       183 ~l~~~l~~~~~~~tii~~sh~~  204 (249)
T PRK14253        183 KIEELMEELKKNYTIVIVTHSM  204 (249)
T ss_pred             HHHHHHHHHhcCCeEEEEecCH
Confidence            9999999997644499999984

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.56  E-value=1.1e-14  Score=141.60  Aligned_cols=156  Identities=16%  Similarity=0.190  Sum_probs=94.2

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc--cCceEEEechhH--------HHHHHHHHHHhhhh-hcccchhhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEAM--------LKINEHMHRLWKNQ-VAEKSLRSSIS  108 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~--~~k~rv~f~~f~--------~~~~~~i~~~~~~~-~~~~t~~e~l~  108 (454)
                      ..++.-++|+|+||+|||||+++|+|..++..  ...+.+.+++..        ......+.++.+.. ....|+.+++.
T Consensus        27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~  106 (251)
T PRK14270         27 IYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVA  106 (251)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCCCcHHHHHH
Confidence            34678899999999999999999999875310  123444443211        12344566666551 11256777663


Q ss_pred             ccc--cCCCCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          109 GWI--TNLPFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       109 ~~~--~~~~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      ...  ......   ...++.++..+++...  ...........+++++       ++++.+|+||+||||+ ++|+.++.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~  184 (251)
T PRK14270        107 YGPRIHGIKDKKELDKIVEWALKKAALWDE--VKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTL  184 (251)
T ss_pred             hHHHhcCCCcHHHHHHHHHHHHHHcCCchh--hhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence            211  111111   1223344444433110  0000111223344443       6888999999999999 89999999


Q ss_pred             HHHHHHHHHHhCCcEEEEecCC
Q 012882          176 ALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       176 ~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      .+.++|.++.+...+|++||+.
T Consensus       185 ~l~~~L~~~~~~~tiiivsH~~  206 (251)
T PRK14270        185 KIEDLMVELKKEYTIVIVTHNM  206 (251)
T ss_pred             HHHHHHHHHHhCCeEEEEEcCH
Confidence            9999999997654499999984

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.56  E-value=4.2e-15  Score=159.01  Aligned_cols=150  Identities=19%  Similarity=0.178  Sum_probs=97.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-------HHHHHHHHHHHhhh-----hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-------MLKINEHMHRLWKN-----QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-------~~~~~~~i~~~~~~-----~~~~~t~~e~l  107 (454)
                      ...+.-++|+||||||||||+++|+|.+++. .|  .+.+++.       .......+.+++|.     .....++.+++
T Consensus       286 i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~-~G--~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l  362 (510)
T PRK15439        286 VRAGEILGLAGVVGAGRTELAETLYGLRPAR-GG--RIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNV  362 (510)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHcCCCCCC-Cc--EEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHH
Confidence            3456779999999999999999999998642 33  4443321       01112345666654     23345666665


Q ss_pred             hcc-c--cCCC-CCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHH
Q 012882          108 SGW-I--TNLP-FDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVF  172 (454)
Q Consensus       108 ~~~-~--~~~~-~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~  172 (454)
                      ... .  .... ...   ..+++++..+++..     ......+..+++++       ++|+.+|+||+||||+ +||+.
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~  437 (510)
T PRK15439        363 CALTHNRRGFWIKPARENAVLERYRRALNIKF-----NHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS  437 (510)
T ss_pred             HhhhhhhhccccChHHHHHHHHHHHHHcCCCC-----CCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChh
Confidence            211 0  0110 011   23445555555520     11223345566665       6888999999999999 89999


Q ss_pred             HHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          173 AIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       173 ~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      .+..+.++|.++.++|. ||++|||.
T Consensus       438 ~~~~l~~~l~~l~~~g~tiIivsHd~  463 (510)
T PRK15439        438 ARNDIYQLIRSIAAQNVAVLFISSDL  463 (510)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEECCCH
Confidence            99999999999988777 99999984

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.56  E-value=8e-15  Score=142.76  Aligned_cols=154  Identities=15%  Similarity=0.163  Sum_probs=92.7

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCC--CcccCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE--GIVKHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~--~~~~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l  107 (454)
                      ..+++-++|+|+||||||||+++|+|..+  +.....+.+.+.+.-        ......++++.|.  ... .|+.+++
T Consensus        29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl  107 (253)
T PRK14242         29 FEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENV  107 (253)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHH
Confidence            35677899999999999999999999753  100123455543311        1233455666554  222 3666666


Q ss_pred             hccc--cCCCCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882          108 SGWI--TNLPFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI  174 (454)
Q Consensus       108 ~~~~--~~~~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a  174 (454)
                      ....  ......   ...++.++..+++....  ...+......+++++       +||+.+|+||+||||+ ++|+.++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~  185 (253)
T PRK14242        108 AYGLRVNGVKDKAYLAERVERSLRHAALWDEV--KDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIAT  185 (253)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh--hHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence            2211  111111   12333444444432100  000111123344443       6888999999999999 8999999


Q ss_pred             HHHHHHHHHHHhCCc-EEEEecCC
Q 012882          175 VALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       175 ~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      ..+.++|.++.+ |. ||++||+.
T Consensus       186 ~~l~~~l~~~~~-~~tvii~tH~~  208 (253)
T PRK14242        186 QKIEELIHELKA-RYTIIIVTHNM  208 (253)
T ss_pred             HHHHHHHHHHhc-CCeEEEEEecH
Confidence            999999999955 55 89999984

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.56  E-value=1.3e-14  Score=136.70  Aligned_cols=149  Identities=15%  Similarity=0.130  Sum_probs=101.9

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---------HHHHHHHHHHHhhh--hhcccchhhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---------MLKINEHMHRLWKN--QVAEKSLRSSIS  108 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---------~~~~~~~i~~~~~~--~~~~~t~~e~l~  108 (454)
                      .+.+.-+.|+|++|+|||||++++.|..++   ..+.++++..         ....+..++++.|.  +.+.+++.+|+.
T Consensus        27 I~~GE~VaiIG~SGaGKSTLLR~lngl~d~---t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl  103 (258)
T COG3638          27 INQGEMVAIIGPSGAGKSTLLRSLNGLVDP---TSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVL  103 (258)
T ss_pred             eCCCcEEEEECCCCCcHHHHHHHHhcccCC---CcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHH
Confidence            456777999999999999999999998864   3457777652         23345556666555  456677777763


Q ss_pred             ccccCC---------CCCh-HHHH--HHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-C
Q 012882          109 GWITNL---------PFDS-KVME--WVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-T  168 (454)
Q Consensus       109 ~~~~~~---------~~~~-~~~e--~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~  168 (454)
                      ....+.         .++. ++..  ..++.+++      .+....-|..|++++       |||+++|+|++-|||. .
T Consensus       104 ~grl~~~s~~~slfglfsk~dk~~Al~aLervgi------~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvas  177 (258)
T COG3638         104 LGRLGYTSTWRSLFGLFSKEDKAQALDALERVGI------LDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVAS  177 (258)
T ss_pred             hhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCc------HHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccc
Confidence            221111         1222 1111  22333333      233345577777776       7999999999999999 8


Q ss_pred             CCHHHHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          169 VDVFAIVALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       169 lD~~~a~~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      ||+.++..+.++|+.+.++ |. ||+.-|+.
T Consensus       178 LDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v  208 (258)
T COG3638         178 LDPESAKKVMDILKDINQEDGITVIVNLHQV  208 (258)
T ss_pred             cChhhHHHHHHHHHHHHHHcCCEEEEEechH
Confidence            9999999999999999865 66 66666653

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.56  E-value=4.9e-15  Score=144.49  Aligned_cols=155  Identities=15%  Similarity=0.150  Sum_probs=92.2

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc-cCceEEEechhHH---HH-HHHHHHHhhhh----hcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV-KHRQRFHFHEAML---KI-NEHMHRLWKNQ----VAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~-~~k~rv~f~~f~~---~~-~~~i~~~~~~~----~~~~t~~e~l~~~  110 (454)
                      ..++.-++|+|+||||||||+++|+|..++.. ...+.+.+.+...   .. ...+.++.++.    .+..++.+++...
T Consensus        26 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~  105 (254)
T PRK10418         26 LQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARET  105 (254)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHH
Confidence            35678899999999999999999999986410 0223444432110   11 12344554442    1122333333111


Q ss_pred             --ccCCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882          111 --ITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI  180 (454)
Q Consensus       111 --~~~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l  180 (454)
                        ..........+..++..+++....   ..+......+++++       +||+.+|+||+||||+ ++|+.++..+.++
T Consensus       106 ~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~  182 (254)
T PRK10418        106 CLALGKPADDATLTAALEAVGLENAA---RVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDL  182 (254)
T ss_pred             HHHcCCChHHHHHHHHHHHcCCCChh---hhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHH
Confidence              111111223444555555542210   01122233445444       7889999999999999 8999999999999


Q ss_pred             HHHHHhC-Cc-EEEEecCC
Q 012882          181 VSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       181 l~~L~~~-G~-vlV~ThN~  197 (454)
                      |.++.+. |. ||++||+.
T Consensus       183 L~~~~~~~g~til~~sH~~  201 (254)
T PRK10418        183 LESIVQKRALGMLLVTHDM  201 (254)
T ss_pred             HHHHHHhcCcEEEEEecCH
Confidence            9999764 66 88888874

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.56  E-value=4.5e-15  Score=146.06  Aligned_cols=150  Identities=15%  Similarity=0.202  Sum_probs=92.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---------HHHHHHHHHHhhhh----hcccchhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---------LKINEHMHRLWKNQ----VAEKSLRSS  106 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---------~~~~~~i~~~~~~~----~~~~t~~e~  106 (454)
                      ..+++-++|.|+||||||||+++|+|..++ ..|  .+.+.+..         ......++++.+..    ....++.++
T Consensus        35 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~sG--~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~  111 (268)
T PRK10419         35 LKSGETVALLGRSGCGKSTLARLLVGLESP-SQG--NVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREI  111 (268)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCc--EEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHH
Confidence            456788999999999999999999998864 344  44443321         11233455554442    123445554


Q ss_pred             hhcccc---CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHH
Q 012882          107 ISGWIT---NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFA  173 (454)
Q Consensus       107 l~~~~~---~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~  173 (454)
                      +.....   .....  ...+++++..+++...     ........+++++       +||+.+|+||+||||+ ++|+.+
T Consensus       112 l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~  186 (268)
T PRK10419        112 IREPLRHLLSLDKAERLARASEMLRAVDLDDS-----VLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVL  186 (268)
T ss_pred             HHHHHHhhccCCHHHHHHHHHHHHHHcCCChh-----HhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHH
Confidence            411111   11111  1234455555554210     0111122333333       6888999999999999 899999


Q ss_pred             HHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          174 IVALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       174 a~~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      +..+.++|.++.++ |. +|++||+.
T Consensus       187 ~~~~~~~l~~~~~~~~~tiiivsH~~  212 (268)
T PRK10419        187 QAGVIRLLKKLQQQFGTACLFITHDL  212 (268)
T ss_pred             HHHHHHHHHHHHHHcCcEEEEEECCH
Confidence            99999999999764 66 89999984

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.56  E-value=6.7e-15  Score=145.28  Aligned_cols=156  Identities=20%  Similarity=0.225  Sum_probs=91.7

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc--cCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhh
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSS  106 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~--~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~  106 (454)
                      ...++.-++|+|+||||||||+++|+|..++..  ...+.+.+.+.-        ...+..+.++.|.  ... .++.++
T Consensus        42 ~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~~n  120 (274)
T PRK14265         42 KIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFP-KSIYEN  120 (274)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCcccc-ccHHHH
Confidence            345678899999999999999999999874210  123455543311        1223445555554  222 356666


Q ss_pred             hhccccCCCCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          107 ISGWITNLPFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       107 l~~~~~~~~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      +..........   ....++.+..+++....  .+........+++++       +||+.+|+|||||||+ +||+..+.
T Consensus       121 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~  198 (274)
T PRK14265        121 IAFAPRANGYKGNLDELVEDSLRRAAIWEEV--KDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTR  198 (274)
T ss_pred             HHhHHHhcCchHHHHHHHHHHHHHcccchhh--HHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHH
Confidence            52211100011   11222233332221000  001111122344443       6889999999999999 89999999


Q ss_pred             HHHHHHHHHHhCCcEEEEecCC
Q 012882          176 ALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       176 ~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      .+.++|.++.+...||++|||.
T Consensus       199 ~l~~~L~~~~~~~tiii~sH~~  220 (274)
T PRK14265        199 QVEELCLELKEQYTIIMVTHNM  220 (274)
T ss_pred             HHHHHHHHHhcCCEEEEEeCCH
Confidence            9999999997543499999985

>PLN03211 ABC transporter G-25; Provisional

Probab=99.56  E-value=5.3e-15  Score=162.29  Aligned_cols=156  Identities=18%  Similarity=0.176  Sum_probs=102.7

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--HHHHHHHHHHHhhh--hhcccchhhhh-hccccCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--MLKINEHMHRLWKN--QVAEKSLRSSI-SGWITNL  114 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--~~~~~~~i~~~~~~--~~~~~t~~e~l-~~~~~~~  114 (454)
                      ..+++-++|+||||||||||+++|+|..++. ...+.+.+++.  .....+.++++.|+  ..+.+|+.|++ +......
T Consensus        91 i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~-~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~  169 (659)
T PLN03211         91 ASPGEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRL  169 (659)
T ss_pred             EECCEEEEEECCCCCCHHHHHHHHhCCCCCC-ceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCC
Confidence            3567789999999999999999999987642 11344544432  22334456777766  45567899987 3221111


Q ss_pred             C--CCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882          115 P--FDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI  180 (454)
Q Consensus       115 ~--~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l  180 (454)
                      +  .+.    ..+++++..+++....+. ..-....+.+++++       ++|+.+|+||+||||+ +||..++..+.++
T Consensus       170 ~~~~~~~~~~~~v~~~l~~lgL~~~~~t-~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~  248 (659)
T PLN03211        170 PKSLTKQEKILVAESVISELGLTKCENT-IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLT  248 (659)
T ss_pred             CCCCCHHHHHHHHHHHHHHcCChhhcCc-eeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHH
Confidence            1  111    334566666666432110 00011123455554       6888999999999999 9999999999999


Q ss_pred             HHHHHhCCc-EEEEecCC
Q 012882          181 VSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       181 l~~L~~~G~-vlV~ThN~  197 (454)
                      |+.+.++|+ ||++||+.
T Consensus       249 L~~l~~~g~TvI~~sH~~  266 (659)
T PLN03211        249 LGSLAQKGKTIVTSMHQP  266 (659)
T ss_pred             HHHHHhCCCEEEEEecCC
Confidence            999988787 77777764

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.56  E-value=7e-15  Score=142.99  Aligned_cols=156  Identities=16%  Similarity=0.153  Sum_probs=93.2

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCccc--CceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVK--HRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~--~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l  107 (454)
                      ..++.-++|+|+||+|||||+++|+|.+++...  ..+.+++.+..        ......++++.+.  .....|+.+++
T Consensus        27 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl  106 (252)
T PRK14272         27 VQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNV  106 (252)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHH
Confidence            456788999999999999999999998754210  13455543311        1223445565554  33445677766


Q ss_pred             hccc--cCCCCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882          108 SGWI--TNLPFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI  174 (454)
Q Consensus       108 ~~~~--~~~~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a  174 (454)
                      ....  .......   +.++.++..+++...  ...........+++++       ++|+.+|+||+||||+ ++|+..+
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~  184 (252)
T PRK14272        107 VAGLKLAGIRDRDHLMEVAERSLRGAALWDE--VKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPAST  184 (252)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHcCcchh--hhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence            3211  1111111   112222222221100  0001111233444443       6888999999999999 8999999


Q ss_pred             HHHHHHHHHHHhCCcEEEEecCC
Q 012882          175 VALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       175 ~~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      ..+.++|.++.+..++|++||+.
T Consensus       185 ~~l~~~l~~~~~~~tiii~sH~~  207 (252)
T PRK14272        185 ARIEDLMTDLKKVTTIIIVTHNM  207 (252)
T ss_pred             HHHHHHHHHHhcCCeEEEEeCCH
Confidence            99999999986533388999984

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.56  E-value=1.1e-14  Score=141.37  Aligned_cols=154  Identities=19%  Similarity=0.187  Sum_probs=94.7

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh-hcccchhhhhhcc--c
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ-VAEKSLRSSISGW--I  111 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~-~~~~t~~e~l~~~--~  111 (454)
                      .++.-++|+|+||+|||||+++|+|..++.....+.+.+++.      ....+..++++.+.. ....|+.+++...  .
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~  105 (246)
T PRK14269         26 EQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKL  105 (246)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccHHHHhhhHHhh
Confidence            467889999999999999999999987421112344444321      112344566666551 1124777776221  1


Q ss_pred             cCCC--CC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          112 TNLP--FD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       112 ~~~~--~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                      ....  ..  ....+.++..+++....  ..........+++++       +||+.+|+||+||||+ ++|+.++..+.+
T Consensus       106 ~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~  183 (246)
T PRK14269        106 HGMIKNKDEEEALVVDCLQKVGLFEEV--KDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEE  183 (246)
T ss_pred             cCcccChHHHHHHHHHHHHHcCCChhh--hHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence            1110  01  12334555555552100  000111123344443       6888999999999999 899999999999


Q ss_pred             HHHHHHhCCc-EEEEecCC
Q 012882          180 IVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       180 ll~~L~~~G~-vlV~ThN~  197 (454)
                      +|.++.+ |. +|++||+.
T Consensus       184 ~l~~~~~-~~tiii~tH~~  201 (246)
T PRK14269        184 LLKELSH-NLSMIMVTHNM  201 (246)
T ss_pred             HHHHHhC-CCEEEEEecCH
Confidence            9999865 65 89999984

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.55  E-value=5.2e-15  Score=149.86  Aligned_cols=155  Identities=14%  Similarity=0.119  Sum_probs=95.7

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HHHH----HHHHHHhhhh----hcccchhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LKIN----EHMHRLWKNQ----VAEKSLRS  105 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~~~----~~i~~~~~~~----~~~~t~~e  105 (454)
                      ...++-++|+|+||||||||+++|+|.+++.....+.+.+++.-      ....    +.+.++.|..    .+.+++.+
T Consensus        39 i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~  118 (330)
T PRK09473         39 LRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGE  118 (330)
T ss_pred             EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHH
Confidence            45678899999999999999999999987421113455554321      1111    1344454442    23345555


Q ss_pred             hhhccccCC-CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHH
Q 012882          106 SISGWITNL-PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVF  172 (454)
Q Consensus       106 ~l~~~~~~~-~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~  172 (454)
                      ++....... ....    ..+.+++...++....   ..+......+++++       +||+.+|+||++|||+ +||+.
T Consensus       119 ~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~---~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~  195 (330)
T PRK09473        119 QLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEAR---KRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVT  195 (330)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChH---HHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHH
Confidence            442111100 1111    2333444444442110   11122334556665       6899999999999999 89999


Q ss_pred             HHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          173 AIVALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       173 ~a~~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      .+..+.++|..+.++ |. +|++||+.
T Consensus       196 ~~~~i~~lL~~l~~~~g~til~iTHdl  222 (330)
T PRK09473        196 VQAQIMTLLNELKREFNTAIIMITHDL  222 (330)
T ss_pred             HHHHHHHHHHHHHHHcCCEEEEEECCH
Confidence            999999999999775 77 99999985

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.55  E-value=9.2e-15  Score=142.08  Aligned_cols=154  Identities=14%  Similarity=0.148  Sum_probs=91.2

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCC--cccCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEG--IVKHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~--~~~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l  107 (454)
                      ..++.-++|+|+||||||||+++|+|..++  .....+.+.+.+..        ...+..++++.+.  ... .++.+++
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni  104 (250)
T PRK14240         26 IEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNV  104 (250)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc-ccHHHHH
Confidence            346788999999999999999999997642  10123455554311        1233445555554  122 5666665


Q ss_pred             hccc--cCCCCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882          108 SGWI--TNLPFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI  174 (454)
Q Consensus       108 ~~~~--~~~~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a  174 (454)
                      ....  ......   ....++++..+++...  ...........+++++       ++|+.+|++|+||||+ ++|+.++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~  182 (250)
T PRK14240        105 AYGPRTHGIKDKKKLDEIVEKSLKGAALWDE--VKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPIST  182 (250)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHcCCchh--hHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence            3211  111101   1122233333322100  0000111122344443       6888999999999999 8999999


Q ss_pred             HHHHHHHHHHHhCCc-EEEEecCC
Q 012882          175 VALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       175 ~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      ..+.++|.++.+ |. +|++||+.
T Consensus       183 ~~l~~~l~~~~~-~~tiii~sH~~  205 (250)
T PRK14240        183 LKIEELIQELKK-DYTIVIVTHNM  205 (250)
T ss_pred             HHHHHHHHHHhc-CCeEEEEEeCH
Confidence            999999999964 55 89999984

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.55  E-value=1.3e-14  Score=157.56  Aligned_cols=154  Identities=18%  Similarity=0.185  Sum_probs=105.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh-hhcccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN-QVAEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~  112 (454)
                      .++++-++|+|+||||||||+++|+|..+|. .|  .+.+++.      ....++.+.+++|+ ..-+.|+.+|+.....
T Consensus       366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~-~G--~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~  442 (582)
T PRK11176        366 IPAGKTVALVGRSGSGKSTIANLLTRFYDID-EG--EILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYART  442 (582)
T ss_pred             eCCCCEEEEECCCCCCHHHHHHHHHhccCCC-Cc--eEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCC
Confidence            3567779999999999999999999998752 34  4444332      23567788888887 3345688888843321


Q ss_pred             CCCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          113 NLPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       113 ~~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                      . ..+.+..++.+...++....     +.+..+..-...+++++       |||+++|+||+||||+ .+|+.+...+.+
T Consensus       443 ~-~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~  521 (582)
T PRK11176        443 E-QYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA  521 (582)
T ss_pred             C-CCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHH
Confidence            1 23445555555555543311     01111111123455554       7999999999999999 899999999999


Q ss_pred             HHHHHHhCCcEEEEecCC
Q 012882          180 IVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       180 ll~~L~~~G~vlV~ThN~  197 (454)
                      .+..+.+..++|++||+.
T Consensus       522 ~l~~~~~~~tvI~VtHr~  539 (582)
T PRK11176        522 ALDELQKNRTSLVIAHRL  539 (582)
T ss_pred             HHHHHhCCCEEEEEecch
Confidence            999886655599999973

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.55  E-value=8e-15  Score=157.24  Aligned_cols=156  Identities=15%  Similarity=0.187  Sum_probs=99.9

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---H--------HHHHHHHHHHhhh--hhcccchhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---M--------LKINEHMHRLWKN--QVAEKSLRSS  106 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---~--------~~~~~~i~~~~~~--~~~~~t~~e~  106 (454)
                      ...++-++|+||||||||||+++|+|.+++ ..|...+.++..   .        ......++++.|.  ....+++.++
T Consensus       307 i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p-~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~  385 (520)
T TIGR03269       307 VKEGEIFGIVGTSGAGKTTLSKIIAGVLEP-TSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDN  385 (520)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHH
Confidence            356677999999999999999999999874 234333321210   0        1123346666665  3445677777


Q ss_pred             hhcccc-CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          107 ISGWIT-NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       107 l~~~~~-~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      +..... .....  ...++.++..+++.... ..+........+++++       +||+.+|+||+||||+ +||+..+.
T Consensus       386 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~  464 (520)
T TIGR03269       386 LTEAIGLELPDELARMKAVITLKMVGFDEEK-AEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKV  464 (520)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc-chhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence            632111 11111  12334455555552100 0011233455666665       6889999999999999 89999999


Q ss_pred             HHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          176 ALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       176 ~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      .+.++|..+.++ |. ||++||+.
T Consensus       465 ~l~~~l~~l~~~~g~tvi~vsHd~  488 (520)
T TIGR03269       465 DVTHSILKAREEMEQTFIIVSHDM  488 (520)
T ss_pred             HHHHHHHHHHHHcCcEEEEEeCCH
Confidence            999999999764 66 99999984

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.55  E-value=8.6e-15  Score=143.51  Aligned_cols=155  Identities=14%  Similarity=0.129  Sum_probs=93.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCc--ccCceEEEechhH--------HHHHHHHHHHhhhh-hcccchhhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGI--VKHRQRFHFHEAM--------LKINEHMHRLWKNQ-VAEKSLRSSIS  108 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~--~~~k~rv~f~~f~--------~~~~~~i~~~~~~~-~~~~t~~e~l~  108 (454)
                      ..+++-++|+|+||||||||+++|+|.+++.  ....+.+.+.+.-        ....+.+.++.+.. ....|+.+++.
T Consensus        31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~  110 (261)
T PRK14263         31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVA  110 (261)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccccccHHHHHH
Confidence            4567889999999999999999999988631  0123455554321        12233455555541 11356666662


Q ss_pred             ccccCCCCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882          109 GWITNLPFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL  177 (454)
Q Consensus       109 ~~~~~~~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L  177 (454)
                      .........   ...++.++...++....  ..........+++++       +||+.+|+||+||||+ ++|+.++..+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~i--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l  188 (261)
T PRK14263        111 FGLRLNRYKGDLGDRVKHALQGAALWDEV--KDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRV  188 (261)
T ss_pred             HHHhhcCchHHHHHHHHHHHHHcCCchhh--hhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHH
Confidence            211100011   12334444444432100  000111122344443       6889999999999999 8999999999


Q ss_pred             HHHHHHHHhCCc-EEEEecCC
Q 012882          178 SGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       178 ~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      .++|.++.+ |. +|++||+.
T Consensus       189 ~~~l~~~~~-~~tii~isH~~  208 (261)
T PRK14263        189 EELMVELKK-DYTIALVTHNM  208 (261)
T ss_pred             HHHHHHHhc-CCeEEEEeCCH
Confidence            999999964 55 88888874

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.55  E-value=1.3e-14  Score=138.15  Aligned_cols=152  Identities=14%  Similarity=0.196  Sum_probs=90.0

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH----------HHHHHHHHHhhhh-hcccchhhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML----------KINEHMHRLWKNQ-VAEKSLRSSIS  108 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~----------~~~~~i~~~~~~~-~~~~t~~e~l~  108 (454)
                      ..++.-++|+|+|||||||||++|+|..++ ..  +.+.+++...          ..+..+.++.+.. ....++.+++.
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~--G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~  100 (218)
T cd03290          24 IPTGQLTMIVGQVGCGKSSLLLAILGEMQT-LE--GKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENIT  100 (218)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccCCC-CC--CeEEECCcccccccccccchhhcceEEEEcCCCccccccHHHHHh
Confidence            346788999999999999999999999864 23  3444433210          1122344444441 11346666653


Q ss_pred             ccccCCCCChHHHHHHHHHHhhhhHHhh-----cchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          109 GWITNLPFDSKVMEWVAAEEKYKQEVQM-----KNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       109 ~~~~~~~~~~~~~e~ll~~~~l~~~~~~-----~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      ...   ..........+..+++......     ...+..-...+++++       ++++.+|++|+||||+ ++|+.++.
T Consensus       101 ~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~  177 (218)
T cd03290         101 FGS---PFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSD  177 (218)
T ss_pred             hcC---cCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHH
Confidence            211   1122222333333333211100     000011122344443       6889999999999999 89999999


Q ss_pred             HHHH--HHHHHHhCCc-EEEEecCC
Q 012882          176 ALSG--IVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       176 ~L~~--ll~~L~~~G~-vlV~ThN~  197 (454)
                      .+.+  ++..+.+.|. +|++||+.
T Consensus       178 ~l~~~~ll~~~~~~~~tii~~sH~~  202 (218)
T cd03290         178 HLMQEGILKFLQDDKRTLVLVTHKL  202 (218)
T ss_pred             HHHHHHHHHHHhcCCCEEEEEeCCh
Confidence            9988  7777766666 88888874

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.55  E-value=5.6e-15  Score=155.72  Aligned_cols=145  Identities=12%  Similarity=0.073  Sum_probs=91.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhc-cc-cCCCCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISG-WI-TNLPFD  117 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~-~~-~~~~~~  117 (454)
                      ..++.-++|+||||||||||+++|+|.+++. .|  .+.+++....    +.. .......+|+.+++.. .. ......
T Consensus        47 I~~GEivgIiGpNGSGKSTLLkiLaGLl~P~-sG--eI~I~G~~~~----i~~-~~~l~~~lTV~EnL~l~~~~~~~~~~  118 (549)
T PRK13545         47 VPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN-KG--TVDIKGSAAL----IAI-SSGLNGQLTGIENIELKGLMMGLTKE  118 (549)
T ss_pred             EeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC-ce--EEEECCEeee----EEe-ccccCCCCcHHHHHHhhhhhcCCCHH
Confidence            3567789999999999999999999998742 33  4444321100    000 0112334566666522 11 111111


Q ss_pred             h--HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC
Q 012882          118 S--KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST  187 (454)
Q Consensus       118 ~--~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~  187 (454)
                      .  ...+.++..+++...      +......+++++       +||+.+|++|+||||+ +||+..+..+.++|.++.++
T Consensus       119 e~~e~i~elLe~lgL~~~------ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~  192 (549)
T PRK13545        119 KIKEIIPEIIEFADIGKF------IYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQ  192 (549)
T ss_pred             HHHHHHHHHHHHcCChhH------hhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhC
Confidence            1  122344444444221      122234455554       6888999999999999 89999999999999999877


Q ss_pred             Cc-EEEEecCCC
Q 012882          188 GT-VLVATSNRA  198 (454)
Q Consensus       188 G~-vlV~ThN~~  198 (454)
                      |. +|++||+..
T Consensus       193 G~TIIIVSHdl~  204 (549)
T PRK13545        193 GKTIFFISHSLS  204 (549)
T ss_pred             CCEEEEEECCHH
Confidence            76 899999854

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.55  E-value=1.1e-14  Score=143.86  Aligned_cols=155  Identities=17%  Similarity=0.174  Sum_probs=95.9

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCc--ccCceEEEechh-------HHHHHHHHHHHhhh--hhcccchhhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGI--VKHRQRFHFHEA-------MLKINEHMHRLWKN--QVAEKSLRSSIS  108 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~--~~~k~rv~f~~f-------~~~~~~~i~~~~~~--~~~~~t~~e~l~  108 (454)
                      ..++.-++|+|+||+|||||+++|+|..++.  ....+.+.+...       .......+.++.+.  ... .++.+++.
T Consensus        44 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~  122 (276)
T PRK14271         44 FPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVL  122 (276)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHH
Confidence            4567889999999999999999999988631  012345554331       11234456666665  222 57777663


Q ss_pred             ccccC-CCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          109 GWITN-LPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       109 ~~~~~-~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      ..... .....    ....+++..+++....  ...+......+++++       ++|+.+|+||+||||+ ++|+.++.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~  200 (276)
T PRK14271        123 AGVRAHKLVPRKEFRGVAQARLTEVGLWDAV--KDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTE  200 (276)
T ss_pred             HHHHhccCCCHHHHHHHHHHHHHHcCCCchh--hhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence            21111 00111    1223344444442100  001112233445444       6888999999999999 89999999


Q ss_pred             HHHHHHHHHHhCCcEEEEecCC
Q 012882          176 ALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       176 ~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      .+.++|.++.+..+||++||+.
T Consensus       201 ~l~~~L~~~~~~~tiiivsH~~  222 (276)
T PRK14271        201 KIEEFIRSLADRLTVIIVTHNL  222 (276)
T ss_pred             HHHHHHHHHhcCCEEEEEeCCH
Confidence            9999999997654599999985

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.55  E-value=9.8e-15  Score=141.88  Aligned_cols=155  Identities=15%  Similarity=0.166  Sum_probs=92.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCc--ccCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGI--VKHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~--~~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l  107 (454)
                      ..++.-++|+|+||||||||+++|+|..++.  ....+.+.+.+..        ......+.++.|.  ... .++.+++
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l  104 (250)
T PRK14262         26 IFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNV  104 (250)
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHH
Confidence            3567889999999999999999999987520  0123455544311        1223445555554  222 5666666


Q ss_pred             hcccc--CCCCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882          108 SGWIT--NLPFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI  174 (454)
Q Consensus       108 ~~~~~--~~~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a  174 (454)
                      .....  ......   ..++..+..+++....  ..........+++++       +||+.+|++|+||||+ ++|+.++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~  182 (250)
T PRK14262        105 AFGPRIHGVKSKHKLDRIVEESLKKAALWDEV--KSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIAT  182 (250)
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh--HHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHH
Confidence            22111  111111   1223333333331100  001112233444443       6888999999999999 8999999


Q ss_pred             HHHHHHHHHHHhCCcEEEEecCC
Q 012882          175 VALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       175 ~~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      ..+.++|.++.+..++|++||+.
T Consensus       183 ~~l~~~l~~~~~~~tili~sH~~  205 (250)
T PRK14262        183 QRIEKLLEELSENYTIVIVTHNI  205 (250)
T ss_pred             HHHHHHHHHHhcCcEEEEEeCCH
Confidence            99999999987533388999984

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.55  E-value=9.6e-15  Score=143.58  Aligned_cols=155  Identities=15%  Similarity=0.205  Sum_probs=94.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc--cCceEEEechh--------HHHHHHHHHHHhhh--hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEA--------MLKINEHMHRLWKN--QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~--~~k~rv~f~~f--------~~~~~~~i~~~~~~--~~~~~t~~e~l  107 (454)
                      ..++.-++|+|+||||||||+++|+|..++..  ...+.|.+.+.        .......+.++.+.  ... .|+.+++
T Consensus        42 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl  120 (267)
T PRK14235         42 IPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFP-KSIYENV  120 (267)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCC-CcHHHHH
Confidence            45678899999999999999999999875310  12345554331        11233445565554  222 3666666


Q ss_pred             hccc--cCCCCC----hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHH
Q 012882          108 SGWI--TNLPFD----SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFA  173 (454)
Q Consensus       108 ~~~~--~~~~~~----~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~  173 (454)
                      ....  ......    ...++.++..+++....  ...+......+++++       +||+.+|++|+||||+ ++|+..
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~  198 (267)
T PRK14235        121 AYGPRIHGLARSKAELDEIVETSLRKAGLWEEV--KDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIA  198 (267)
T ss_pred             HHHHHhcccccchHHHHHHHHHHHHHcCCchhh--hHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHH
Confidence            3211  111101    12234445554442100  001111223344443       6888999999999999 899999


Q ss_pred             HHHHHHHHHHHHhCCcEEEEecCC
Q 012882          174 IVALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       174 a~~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      +..+.++|..+.+..++|++||+.
T Consensus       199 ~~~l~~~L~~l~~~~tiiivtH~~  222 (267)
T PRK14235        199 TAKVEELIDELRQNYTIVIVTHSM  222 (267)
T ss_pred             HHHHHHHHHHHhcCCeEEEEEcCH
Confidence            999999999996633489999984

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.55  E-value=8.1e-15  Score=148.21  Aligned_cols=156  Identities=12%  Similarity=0.054  Sum_probs=96.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc-cCceEEEechhH------HHHHH----HHHHHhhhh----hcccchh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV-KHRQRFHFHEAM------LKINE----HMHRLWKNQ----VAEKSLR  104 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~-~~k~rv~f~~f~------~~~~~----~i~~~~~~~----~~~~t~~  104 (454)
                      ...++-++|+|+||||||||+++|+|.+++.. ...+.+.+.+.-      ....+    .+.++.|..    .+.+++.
T Consensus        30 i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~  109 (326)
T PRK11022         30 VKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVG  109 (326)
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHH
Confidence            35677899999999999999999999886310 123455554321      11111    244444431    2333444


Q ss_pred             hhhhcccc---CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCH
Q 012882          105 SSISGWIT---NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDV  171 (454)
Q Consensus       105 e~l~~~~~---~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~  171 (454)
                      +++.....   .....  ...+.+++..+++...   ...+.....++++++       +||+.+|+||++|||+ +||+
T Consensus       110 ~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~---~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~  186 (326)
T PRK11022        110 FQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP---ASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDV  186 (326)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh---HHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Confidence            33321111   11111  1234445555555211   011222344566665       7999999999999999 8999


Q ss_pred             HHHHHHHHHHHHHHh-CCc-EEEEecCCC
Q 012882          172 FAIVALSGIVSRLLS-TGT-VLVATSNRA  198 (454)
Q Consensus       172 ~~a~~L~~ll~~L~~-~G~-vlV~ThN~~  198 (454)
                      ..+..+.++|.++.+ .|. +|++||+..
T Consensus       187 ~~~~~il~lL~~l~~~~g~til~iTHdl~  215 (326)
T PRK11022        187 TIQAQIIELLLELQQKENMALVLITHDLA  215 (326)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            999999999999986 476 999999853

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.55  E-value=1.3e-14  Score=142.44  Aligned_cols=156  Identities=17%  Similarity=0.227  Sum_probs=92.1

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc--cCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhh
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSS  106 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~--~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~  106 (454)
                      ...+++-++|+|+||||||||+++|+|..++..  ...+.+++++..        ......+.++.+.  ... .|+.++
T Consensus        32 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~en  110 (264)
T PRK14243         32 DIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDN  110 (264)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCcccc-ccHHHH
Confidence            345678899999999999999999999764200  123445543311        1223345555554  122 366666


Q ss_pred             hhcccc--CCCCC-hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          107 ISGWIT--NLPFD-SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       107 l~~~~~--~~~~~-~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      +.....  ..... ...++.++...++....  ..........+++++       +||+.+|+||+||||+ ++|+..+.
T Consensus       111 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~  188 (264)
T PRK14243        111 IAYGARINGYKGDMDELVERSLRQAALWDEV--KDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTL  188 (264)
T ss_pred             HHhhhhhcCcchHHHHHHHHHHHHhCchhhH--HHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence            532111  11000 12222333333321100  000111122344443       6888999999999999 89999999


Q ss_pred             HHHHHHHHHHhCCcEEEEecCC
Q 012882          176 ALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       176 ~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      .+.++|.++.+..+||++||+.
T Consensus       189 ~l~~~L~~~~~~~tvi~vtH~~  210 (264)
T PRK14243        189 RIEELMHELKEQYTIIIVTHNM  210 (264)
T ss_pred             HHHHHHHHHhcCCEEEEEecCH
Confidence            9999999997654599999984

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.55  E-value=1.5e-14  Score=157.56  Aligned_cols=152  Identities=14%  Similarity=0.130  Sum_probs=106.9

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEech--h----HHHHHHHHHHHhhh-hhcccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE--A----MLKINEHMHRLWKN-QVAEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~--f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~  112 (454)
                      .++++-++|+|++|||||||+++|+|..+|. .|  .+.+++  .    ...+++.+.+++|+ ..-+.|+.+|+.... 
T Consensus       364 i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~-~G--~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-  439 (592)
T PRK10790        364 VPSRGFVALVGHTGSGKSTLASLLMGYYPLT-EG--EIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-  439 (592)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcccCCC-Cc--eEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-
Confidence            4567889999999999999999999998752 34  444443  2    23567888888887 233458888884432 


Q ss_pred             CCCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          113 NLPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       113 ~~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                        ..+.+..++.+...++...-     +.+..+..-...+++++       |||+++|+||+||||+ .+|..+...+.+
T Consensus       440 --~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~  517 (592)
T PRK10790        440 --DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQ  517 (592)
T ss_pred             --CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH
Confidence              34555666666666654321     11111112223355554       7999999999999999 899999999999


Q ss_pred             HHHHHHhCCcEEEEecCC
Q 012882          180 IVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       180 ll~~L~~~G~vlV~ThN~  197 (454)
                      .+..+.+..++|++||+.
T Consensus       518 ~l~~~~~~~tvIivtHr~  535 (592)
T PRK10790        518 ALAAVREHTTLVVIAHRL  535 (592)
T ss_pred             HHHHHhCCCEEEEEecch
Confidence            999887655599999973

>PRK13409 putative ATPase RIL; Provisional

Probab=99.55  E-value=8.6e-15  Score=158.78  Aligned_cols=140  Identities=14%  Similarity=0.106  Sum_probs=96.4

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh--hhcccchhhhhhccccCCCCCh
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN--QVAEKSLRSSISGWITNLPFDS  118 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~~~~~  118 (454)
                      ..+.-++|+||||||||||+++|+|.+++. .  +.+.++       ..+++++|.  .....|+.+++........ ..
T Consensus       363 ~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~-~--G~I~~~-------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~-~~  431 (590)
T PRK13409        363 YEGEVIGIVGPNGIGKTTFAKLLAGVLKPD-E--GEVDPE-------LKISYKPQYIKPDYDGTVEDLLRSITDDLG-SS  431 (590)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCC-c--eEEEEe-------eeEEEecccccCCCCCcHHHHHHHHhhhcC-hH
Confidence            456779999999999999999999998742 3  344433       135555554  2345677777643211111 12


Q ss_pred             HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC-Cc
Q 012882          119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST-GT  189 (454)
Q Consensus       119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~-G~  189 (454)
                      ...++++..+++...      .......|++++       ++|+.+|+||+||||+ +||+.++..+.++|+++.++ |.
T Consensus       432 ~~~~~~L~~l~l~~~------~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~  505 (590)
T PRK13409        432 YYKSEIIKPLQLERL------LDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREA  505 (590)
T ss_pred             HHHHHHHHHCCCHHH------HhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCC
Confidence            334556666665321      122334455554       6888999999999999 89999999999999999764 65


Q ss_pred             -EEEEecCC
Q 012882          190 -VLVATSNR  197 (454)
Q Consensus       190 -vlV~ThN~  197 (454)
                       +|++||+.
T Consensus       506 tviivsHD~  514 (590)
T PRK13409        506 TALVVDHDI  514 (590)
T ss_pred             EEEEEeCCH
Confidence             99999984

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.54  E-value=9e-15  Score=145.20  Aligned_cols=156  Identities=16%  Similarity=0.186  Sum_probs=94.0

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc--cCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhh
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSS  106 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~--~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~  106 (454)
                      ...++.-++|+|+||||||||+++|+|..++..  ...+.|.+++.-        ...++.+.++.|.  ... .++.++
T Consensus        61 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~en  139 (285)
T PRK14254         61 DIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFP-KSIYDN  139 (285)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCc-CCHHHH
Confidence            345677899999999999999999999875200  123445443211        1223345555554  222 266666


Q ss_pred             hhccc--cCCCC-ChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          107 ISGWI--TNLPF-DSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       107 l~~~~--~~~~~-~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      +....  ..... ....+++++..+++....  .+.+..-...+++++       +||+.+|+||+||||+ +||+..+.
T Consensus       140 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i--~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~  217 (285)
T PRK14254        140 VAYGLKIQGYDGDIDERVEESLRRAALWDEV--KDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATS  217 (285)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHcCCCchh--HHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHH
Confidence            52211  11111 112334444444431100  001111223444443       6888999999999999 89999999


Q ss_pred             HHHHHHHHHHhCCcEEEEecCC
Q 012882          176 ALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       176 ~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      .+.++|..+.+.+.+|++||+.
T Consensus       218 ~l~~~L~~~~~~~tiii~tH~~  239 (285)
T PRK14254        218 KIEDLIEELAEEYTVVIVTHNM  239 (285)
T ss_pred             HHHHHHHHHhcCCEEEEEeCCH
Confidence            9999999997655599999984

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.54  E-value=1.4e-14  Score=136.53  Aligned_cols=145  Identities=18%  Similarity=0.178  Sum_probs=86.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh-hhcccchhhhhhccccCCCCCh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN-QVAEKSLRSSISGWITNLPFDS  118 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~~~~~  118 (454)
                      .++++-++|.||||||||||+++|+|..++ ..|  .+.+.+       .+.++.+. .....|+.+++.....   ...
T Consensus        28 i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~-~~G--~i~~~g-------~i~~~~q~~~l~~~t~~enl~~~~~---~~~   94 (204)
T cd03250          28 VPKGELVAIVGPVGSGKSSLLSALLGELEK-LSG--SVSVPG-------SIAYVSQEPWIQNGTIRENILFGKP---FDE   94 (204)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCcCCC-CCC--eEEEcC-------EEEEEecCchhccCcHHHHhccCCC---cCH
Confidence            456788999999999999999999998874 233  444433       24444443 1123466666633211   122


Q ss_pred             HHHHHHHHHHhhhhHHhh-----cchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH-HHHHH
Q 012882          119 KVMEWVAAEEKYKQEVQM-----KNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG-IVSRL  184 (454)
Q Consensus       119 ~~~e~ll~~~~l~~~~~~-----~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~-ll~~L  184 (454)
                      .........+++......     ..........+++++       ++|+.+|++|+||||+ ++|+..+..+.+ ++..+
T Consensus        95 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~  174 (204)
T cd03250          95 ERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGL  174 (204)
T ss_pred             HHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh
Confidence            222222222222111000     000011112233333       6888999999999999 899999988887 56766


Q ss_pred             HhCCc-EEEEecCC
Q 012882          185 LSTGT-VLVATSNR  197 (454)
Q Consensus       185 ~~~G~-vlV~ThN~  197 (454)
                      .+.|. ||++||+.
T Consensus       175 ~~~~~tvi~~sh~~  188 (204)
T cd03250         175 LLNNKTRILVTHQL  188 (204)
T ss_pred             ccCCCEEEEEeCCH
Confidence            66666 88888874

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.54  E-value=1e-14  Score=142.70  Aligned_cols=155  Identities=17%  Similarity=0.219  Sum_probs=95.9

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCc----eEEEech--h----HHHHHHHHHHHhhh--hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHR----QRFHFHE--A----MLKINEHMHRLWKN--QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k----~rv~f~~--f----~~~~~~~i~~~~~~--~~~~~t~~e~l  107 (454)
                      ..++.-++|+|+||+|||||+++|+|..++. .+.    +.+.+.+  .    .......++++.+.  .....|+.+++
T Consensus        33 i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~-~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl  111 (257)
T PRK14246         33 IPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY-DSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNI  111 (257)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-cCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHH
Confidence            3467889999999999999999999988642 221    2222211  1    11234456666655  33456777776


Q ss_pred             hccccCC-CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882          108 SGWITNL-PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI  174 (454)
Q Consensus       108 ~~~~~~~-~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a  174 (454)
                      ....... ....    ..+++++..+++....  .+........+++++       +|++.+|++||||||+ ++|+.+.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~  189 (257)
T PRK14246        112 AYPLKSHGIKEKREIKKIVEECLRKVGLWKEV--YDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNS  189 (257)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc--hhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHH
Confidence            3221111 1111    2334444544442100  001111223344443       6888999999999999 8999999


Q ss_pred             HHHHHHHHHHHhCCcEEEEecCC
Q 012882          175 VALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       175 ~~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      ..+.++|.++.+...+|++||+.
T Consensus       190 ~~l~~~l~~~~~~~tiilvsh~~  212 (257)
T PRK14246        190 QAIEKLITELKNEIAIVIVSHNP  212 (257)
T ss_pred             HHHHHHHHHHhcCcEEEEEECCH
Confidence            99999999997644499999984

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.54  E-value=2.4e-14  Score=130.01  Aligned_cols=153  Identities=20%  Similarity=0.217  Sum_probs=104.9

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH--HHHHHHHHHhhh--hhcccchhhhhhcccc-CC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML--KINEHMHRLWKN--QVAEKSLRSSISGWIT-NL  114 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~--~~~~~i~~~~~~--~~~~~t~~e~l~~~~~-~~  114 (454)
                      .+.++-+.|+||+|+|||||+++++|...| ..+...++..+...  -..+-+..+.|+  ++..+|+.+|+-..+. ++
T Consensus        22 v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P-~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L  100 (231)
T COG3840          22 VPAGEIVAILGPSGAGKSTLLNLIAGFETP-ASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL  100 (231)
T ss_pred             ecCCcEEEEECCCCccHHHHHHHHHhccCC-CCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccc
Confidence            356788999999999999999999997754 35555555432211  112233444555  5667788888733332 23


Q ss_pred             CCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHH
Q 012882          115 PFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSR  183 (454)
Q Consensus       115 ~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~  183 (454)
                      ..+   .+.++.++...++.+.      ..++-..+++++       |+|+++-+||+||||+ .||+.-+..+..++..
T Consensus       101 kL~a~~r~~v~~aa~~vGl~~~------~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~  174 (231)
T COG3840         101 KLNAEQREKVEAAAAQVGLAGF------LKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQ  174 (231)
T ss_pred             ccCHHHHHHHHHHHHHhChhhH------hhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHH
Confidence            222   2555666666666432      234445555554       6888999999999999 7999999999999999


Q ss_pred             HHhC-Cc-EEEEecCCCccc
Q 012882          184 LLST-GT-VLVATSNRAPWD  201 (454)
Q Consensus       184 L~~~-G~-vlV~ThN~~P~d  201 (454)
                      +.++ +. ++++||+  |+|
T Consensus       175 l~~E~~~TllmVTH~--~~D  192 (231)
T COG3840         175 LCDERKMTLLMVTHH--PED  192 (231)
T ss_pred             HHHhhCCEEEEEeCC--HHH
Confidence            9764 54 9999997  444

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.54  E-value=6.7e-15  Score=143.97  Aligned_cols=155  Identities=17%  Similarity=0.147  Sum_probs=94.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCccc--CceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVK--HRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~--~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l  107 (454)
                      ..++.-++|+|+||||||||+++|+|.+++...  ..+.+.+.+.-        ......+.++.++  ... .|+.+++
T Consensus        30 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl  108 (259)
T PRK14260         30 IYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENV  108 (259)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC-ccHHHHH
Confidence            356788999999999999999999998763100  13445543211        1233445566555  222 5777766


Q ss_pred             hcccc-CCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882          108 SGWIT-NLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI  174 (454)
Q Consensus       108 ~~~~~-~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a  174 (454)
                      ..... ....+.    ...++++..+++...  ...........+++++       +||+.+|++|+||||+ ++|+.++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~  186 (259)
T PRK14260        109 AYGVRISAKLPQADLDEIVESALKGAALWQE--VKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIAT  186 (259)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHcCCcch--hhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence            32111 000111    223344443333110  0001111223344443       6888999999999999 8999999


Q ss_pred             HHHHHHHHHHHhCCcEEEEecCC
Q 012882          175 VALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       175 ~~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      ..+.++|.++.+..++|++||+.
T Consensus       187 ~~l~~~l~~~~~~~tiii~tH~~  209 (259)
T PRK14260        187 MKVEELIHSLRSELTIAIVTHNM  209 (259)
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCH
Confidence            99999999987643489999984

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.54  E-value=1.7e-14  Score=135.85  Aligned_cols=124  Identities=17%  Similarity=0.168  Sum_probs=77.3

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCC--CCcccCceEEEechhHH------H-HHHHHHHHhhhhhcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGAT--EGIVKHRQRFHFHEAML------K-INEHMHRLWKNQVAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l--~~~~~~k~rv~f~~f~~------~-~~~~i~~~~~~~~~~~t~~e~l~~~  110 (454)
                      ..+++-++|+|+||||||||+++|+|..  ++ ..  +++.+++...      . ....+.++.+.              
T Consensus        23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p-~~--G~i~~~g~~~~~~~~~~~~~~~i~~v~q~--------------   85 (200)
T cd03217          23 IKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV-TE--GEILFKGEDITDLPPEERARLGIFLAFQY--------------   85 (200)
T ss_pred             ECCCcEEEEECCCCCCHHHHHHHHhCCCcCCC-Cc--cEEEECCEECCcCCHHHHhhCcEEEeecC--------------
Confidence            4577889999999999999999999984  32 23  3454433110      0 01112222222              


Q ss_pred             ccCCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882          111 ITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS  182 (454)
Q Consensus       111 ~~~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~  182 (454)
                      ..  .+.....++.+..               ....+++++       ++++.+|++|+||||+ ++|+.++..+.++|.
T Consensus        86 ~~--~~~~~~~~~~l~~---------------~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~  148 (200)
T cd03217          86 PP--EIPGVKNADFLRY---------------VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVIN  148 (200)
T ss_pred             hh--hccCccHHHHHhh---------------ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence            00  0111111111110               011122222       5667999999999999 899999999999999


Q ss_pred             HHHhCCc-EEEEecCC
Q 012882          183 RLLSTGT-VLVATSNR  197 (454)
Q Consensus       183 ~L~~~G~-vlV~ThN~  197 (454)
                      ++.++|. +|++||+.
T Consensus       149 ~~~~~~~tiii~sh~~  164 (200)
T cd03217         149 KLREEGKSVLIITHYQ  164 (200)
T ss_pred             HHHHCCCEEEEEecCH
Confidence            9987776 88888874

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.54  E-value=7.3e-15  Score=154.35  Aligned_cols=152  Identities=14%  Similarity=0.133  Sum_probs=96.6

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH--------HHHHHHHHHHhhh----hhcccchhhh
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM--------LKINEHMHRLWKN----QVAEKSLRSS  106 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~--------~~~~~~i~~~~~~----~~~~~t~~e~  106 (454)
                      ....+.-++|+|++|||||||+++|+|.++|   ..+.+.|.+.-        ......+..+.|.    +.+.+|+.+.
T Consensus       313 ~l~~GE~lglVGeSGsGKSTlar~i~gL~~P---~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~  389 (539)
T COG1123         313 DLREGETLGLVGESGSGKSTLARILAGLLPP---SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDI  389 (539)
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHH
Confidence            4456788999999999999999999999985   23444443321        1122222222222    2333444444


Q ss_pred             hhccccCCC-C-Ch---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHH
Q 012882          107 ISGWITNLP-F-DS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFA  173 (454)
Q Consensus       107 l~~~~~~~~-~-~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~  173 (454)
                      +...+.... . ..   .++.+++...++.     .+.+.....++++++       |||+.+|++|++|||+ .||+..
T Consensus       390 i~epL~~~~~~~~~~~~~rv~~ll~~VgL~-----~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsv  464 (539)
T COG1123         390 LAEPLRIHGGGSGAERRARVAELLELVGLP-----PEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSV  464 (539)
T ss_pred             HHhHHhhhcccchHHHHHHHHHHHHHcCCC-----HHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHH
Confidence            422111100 0 01   2233334444442     112344455667665       7999999999999999 799999


Q ss_pred             HHHHHHHHHHHHhC-Cc-EEEEecCCC
Q 012882          174 IVALSGIVSRLLST-GT-VLVATSNRA  198 (454)
Q Consensus       174 a~~L~~ll~~L~~~-G~-vlV~ThN~~  198 (454)
                      +..+.++|..|.++ |. .|++|||..
T Consensus       465 qa~VlnLl~~lq~e~g~t~lfISHDl~  491 (539)
T COG1123         465 QAQVLNLLKDLQEELGLTYLFISHDLA  491 (539)
T ss_pred             HHHHHHHHHHHHHHhCCEEEEEeCCHH
Confidence            99999999999876 77 999999953

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.54  E-value=1e-14  Score=141.91  Aligned_cols=154  Identities=14%  Similarity=0.157  Sum_probs=91.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc--cCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~--~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l  107 (454)
                      ..+++-++|+|+||||||||+++|+|..++..  ...+.+.+++..        ...++.+.++.+.  ... .++.+++
T Consensus        27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl  105 (251)
T PRK14249         27 FPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFP-KSIFDNV  105 (251)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCc-CcHHHHH
Confidence            35678899999999999999999999886421  012444443211        1223445555554  222 3666665


Q ss_pred             hcccc--CCCCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882          108 SGWIT--NLPFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI  174 (454)
Q Consensus       108 ~~~~~--~~~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a  174 (454)
                      .....  ......   ...+.++...++...  .......-...+++++       +||+.+|++|+||||+ ++|+..+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~  183 (251)
T PRK14249        106 AFGPRMLGTTAQSRLDEVVEKSLRQAALWDE--VKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVST  183 (251)
T ss_pred             hhHHHhcCCChhhHHHHHHHHHHHHhCCchh--hhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence            22111  111111   122223333332110  0001111222344443       6889999999999999 8999999


Q ss_pred             HHHHHHHHHHHhCCc-EEEEecCC
Q 012882          175 VALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       175 ~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      ..+.++|..+. +|. ||++||+.
T Consensus       184 ~~l~~~l~~~~-~~~tilivsh~~  206 (251)
T PRK14249        184 MRIEELMQELK-QNYTIAIVTHNM  206 (251)
T ss_pred             HHHHHHHHHHh-cCCEEEEEeCCH
Confidence            99999999985 455 99999984

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.54  E-value=8e-15  Score=144.12  Aligned_cols=155  Identities=14%  Similarity=0.186  Sum_probs=90.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCC--CcccCceEEEechhH--------HHHHHHHHHHhhhh--hcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE--GIVKHRQRFHFHEAM--------LKINEHMHRLWKNQ--VAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~--~~~~~k~rv~f~~f~--------~~~~~~i~~~~~~~--~~~~t~~e~l  107 (454)
                      ..++.-++|+|+||||||||+++|+|..+  +.....+.+.+.+..        ......+.++.|..  .. .++.+++
T Consensus        44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl  122 (268)
T PRK14248         44 IEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFP-KSIYNNI  122 (268)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCc-ccHHHHH
Confidence            45677899999999999999999999753  100123444443211        12233455655541  22 3666665


Q ss_pred             hcccc--CCCCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882          108 SGWIT--NLPFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI  174 (454)
Q Consensus       108 ~~~~~--~~~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a  174 (454)
                      .....  ......   ...+..+..+++...  ...........+++++       ++|+.+|++|+||||+ ++|+..+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~  200 (268)
T PRK14248        123 THALKYAGERRKSVLDEIVEESLTKAALWDE--VKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISN  200 (268)
T ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHcCCCcc--hHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHH
Confidence            32111  110001   112223332222100  0001111223344444       6888999999999999 8999999


Q ss_pred             HHHHHHHHHHHhCCcEEEEecCC
Q 012882          175 VALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       175 ~~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      ..+.++|..+.+..+||++||+.
T Consensus       201 ~~l~~~l~~~~~~~tiii~tH~~  223 (268)
T PRK14248        201 AKIEELITELKEEYSIIIVTHNM  223 (268)
T ss_pred             HHHHHHHHHHhcCCEEEEEEeCH
Confidence            99999999996543499999984

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.54  E-value=1.4e-14  Score=140.80  Aligned_cols=156  Identities=15%  Similarity=0.110  Sum_probs=91.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCC--CcccCceEEEechhH--------HHHHHHHHHHhhhh-hcccchhhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE--GIVKHRQRFHFHEAM--------LKINEHMHRLWKNQ-VAEKSLRSSIS  108 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~--~~~~~k~rv~f~~f~--------~~~~~~i~~~~~~~-~~~~t~~e~l~  108 (454)
                      ..+++-++|+|+||||||||+++|+|..+  +.....+++.+++..        ......+.++.|.. ....|+.+++.
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~  107 (252)
T PRK14239         28 FYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVV  107 (252)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCcCcHHHHHH
Confidence            34677899999999999999999999743  210113445443211        12234455665541 11256777663


Q ss_pred             ccc--cCCCCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          109 GWI--TNLPFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       109 ~~~--~~~~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      ...  .......   ...++++..+++...  ...........+++++       +||+.+|+||+||||+ ++|+.++.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~  185 (252)
T PRK14239        108 YGLRLKGIKDKQVLDEAVEKSLKGASIWDE--VKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAG  185 (252)
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHcCCchh--HHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHH
Confidence            211  1111111   122233333332110  0001111223344443       6888999999999999 89999999


Q ss_pred             HHHHHHHHHHhCCcEEEEecCC
Q 012882          176 ALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       176 ~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      .+.++|.++.+..++|++||+.
T Consensus       186 ~l~~~l~~~~~~~tii~~sH~~  207 (252)
T PRK14239        186 KIEETLLGLKDDYTMLLVTRSM  207 (252)
T ss_pred             HHHHHHHHHhhCCeEEEEECCH
Confidence            9999999996543499999984

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.54  E-value=8.9e-15  Score=160.07  Aligned_cols=150  Identities=15%  Similarity=0.152  Sum_probs=98.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---------HHHHHHHHHHHhhh----hhcccchhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---------MLKINEHMHRLWKN----QVAEKSLRSS  106 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---------~~~~~~~i~~~~~~----~~~~~t~~e~  106 (454)
                      ...+.-++|+|+||||||||+++|+|.+++. .  +.|.+++.         .....+.++++.|.    ..+.+++.++
T Consensus       347 i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~-~--G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~  423 (623)
T PRK10261        347 LWPGETLSLVGESGSGKSTTGRALLRLVESQ-G--GEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDS  423 (623)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-C--cEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHH
Confidence            3456779999999999999999999998742 3  44444321         01122345666654    2344567776


Q ss_pred             hhccc--cCCCCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHH
Q 012882          107 ISGWI--TNLPFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFA  173 (454)
Q Consensus       107 l~~~~--~~~~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~  173 (454)
                      +....  .......   ..+++++..+++..     .........|++++       +||+.+|+||++|||+ +||+..
T Consensus       424 l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~-----~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~  498 (623)
T PRK10261        424 IMEPLRVHGLLPGKAAAARVAWLLERVGLLP-----EHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSI  498 (623)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHcCCCH-----HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence            63211  1111111   23445555555521     11122334556665       6889999999999999 899999


Q ss_pred             HHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          174 IVALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       174 a~~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      +..+.++|.++.++ |. ||++|||.
T Consensus       499 ~~~i~~ll~~l~~~~g~tvi~isHdl  524 (623)
T PRK10261        499 RGQIINLLLDLQRDFGIAYLFISHDM  524 (623)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            99999999999764 76 99999985

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.54  E-value=9.2e-15  Score=143.70  Aligned_cols=154  Identities=19%  Similarity=0.203  Sum_probs=92.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCc--ccCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGI--VKHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~--~~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l  107 (454)
                      ..+++-++|+|+||||||||+++|+|..++.  ....+.+.+.+.-        ....+.++++.+.  ... .|+.+++
T Consensus        43 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni  121 (267)
T PRK14237         43 FEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENI  121 (267)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHH
Confidence            3567889999999999999999999987531  0123445443311        1234455666554  222 4677766


Q ss_pred             hccccCC-CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882          108 SGWITNL-PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI  174 (454)
Q Consensus       108 ~~~~~~~-~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a  174 (454)
                      ....... ....    ..+.+++..+++....  ...+......+++++       +|++.+|++|+||||+ ++|+.++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i--~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~  199 (267)
T PRK14237        122 TFALERAGVKDKKVLDEIVETSLKQAALWDQV--KDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPIST  199 (267)
T ss_pred             HhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh--hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence            3221111 0111    2223333343331100  001111122334443       6888999999999999 8999999


Q ss_pred             HHHHHHHHHHHhCCc-EEEEecCC
Q 012882          175 VALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       175 ~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      ..+.++|..+.+ +. +|++||+.
T Consensus       200 ~~l~~~l~~~~~-~~tiii~tH~~  222 (267)
T PRK14237        200 MQLEETMFELKK-NYTIIIVTHNM  222 (267)
T ss_pred             HHHHHHHHHHhc-CCEEEEEecCH
Confidence            999999999965 45 89999874

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.54  E-value=1.6e-14  Score=142.42  Aligned_cols=155  Identities=17%  Similarity=0.218  Sum_probs=93.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCc--ccCceEEEechh--------HHHHHHHHHHHhhh--hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGI--VKHRQRFHFHEA--------MLKINEHMHRLWKN--QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~--~~~k~rv~f~~f--------~~~~~~~i~~~~~~--~~~~~t~~e~l  107 (454)
                      ..++.-++|+|+||||||||+++|+|..++.  ....+.+.+++.        ....+..+.++.++  ... .|+.+++
T Consensus        48 i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl  126 (272)
T PRK14236         48 IPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFP-KSIYENV  126 (272)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCc-ccHHHHH
Confidence            4567889999999999999999999987521  012344544321        11234455566554  222 2677766


Q ss_pred             hccc--cCCCCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882          108 SGWI--TNLPFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI  174 (454)
Q Consensus       108 ~~~~--~~~~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a  174 (454)
                      ....  .......   ...++++..+++....  ...+......+++++       +||+.+|+||+||||+ ++|+.++
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~  204 (272)
T PRK14236        127 VYGLRLQGINNRRVLDEAVERSLRGAALWDEV--KDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPIST  204 (272)
T ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHcCCChhH--HHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHH
Confidence            3211  1111111   2233344433332100  001111223344443       6888999999999999 8999999


Q ss_pred             HHHHHHHHHHHhCCcEEEEecCC
Q 012882          175 VALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       175 ~~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      ..+.++|.++.+..++|++||+.
T Consensus       205 ~~l~~~L~~~~~~~tiiivtH~~  227 (272)
T PRK14236        205 LKIEELITELKSKYTIVIVTHNM  227 (272)
T ss_pred             HHHHHHHHHHHhCCeEEEEeCCH
Confidence            99999999997643489999984

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.54  E-value=3.4e-14  Score=138.37  Aligned_cols=155  Identities=17%  Similarity=0.188  Sum_probs=93.3

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCc-c-cCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGI-V-KHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~-~-~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l  107 (454)
                      ..++.-++|+|+||||||||+++|+|..++. . ...+++.+++..        ......+.++.|+  ... .|+.+++
T Consensus        29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~eni  107 (253)
T PRK14261         29 IPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFP-KSIYENV  107 (253)
T ss_pred             ECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCc-ccHHHHH
Confidence            3467789999999999999999999976421 0 113555554321        1223335555554  222 3666666


Q ss_pred             hccccCC-CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882          108 SGWITNL-PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI  174 (454)
Q Consensus       108 ~~~~~~~-~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a  174 (454)
                      ....... ....    ..+.+++..+++....  ...+......+++++       ++++.+|++|+||||+ ++|+..+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~  185 (253)
T PRK14261        108 AYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV--KDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIAT  185 (253)
T ss_pred             HhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh--HHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence            3211110 1111    1223333333331100  011122233455554       6889999999999999 8999999


Q ss_pred             HHHHHHHHHHHhCCcEEEEecCC
Q 012882          175 VALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       175 ~~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      ..+.++|..+.+...+|++||+.
T Consensus       186 ~~l~~~l~~~~~~~tvii~sh~~  208 (253)
T PRK14261        186 AKIEDLIEDLKKEYTVIIVTHNM  208 (253)
T ss_pred             HHHHHHHHHHhhCceEEEEEcCH
Confidence            99999999997644499999974

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.54  E-value=1.8e-14  Score=140.05  Aligned_cols=154  Identities=15%  Similarity=0.174  Sum_probs=93.0

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhC---CCCcccCceEEEechhH--------HHHHHHHHHHhhhh-hcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGA---TEGIVKHRQRFHFHEAM--------LKINEHMHRLWKNQ-VAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~---l~~~~~~k~rv~f~~f~--------~~~~~~i~~~~~~~-~~~~t~~e~l  107 (454)
                      ..++.-++|+|+||||||||+++|+|.   .++ ....+.+.+++..        ....+.++++++.. ....|+.+++
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl  104 (250)
T PRK14245         26 IEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPA-TRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENV  104 (250)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhhhhcccCC-CCCceEEEECCEecccccccHHHHhhheEEEecCCccCcccHHHHH
Confidence            356788999999999999999999986   332 1123445443311        12234456665541 1123666666


Q ss_pred             hccc--cCCCCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882          108 SGWI--TNLPFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI  174 (454)
Q Consensus       108 ~~~~--~~~~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a  174 (454)
                      ....  ......   ...++.++..+++....  ..........+++++       ++|+.+|++|+||||+ ++|+.++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~  182 (250)
T PRK14245        105 AYGLRVNGVKDNAFIRQRVEETLKGAALWDEV--KDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPIST  182 (250)
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch--hhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence            3211  111111   12334444444432100  001112233455554       6888999999999999 8999999


Q ss_pred             HHHHHHHHHHHhCCc-EEEEecCC
Q 012882          175 VALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       175 ~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      ..+.++|.++.+ |. ||++||+.
T Consensus       183 ~~l~~~l~~~~~-~~tiiivtH~~  205 (250)
T PRK14245        183 AKVEELIHELKK-DYTIVIVTHNM  205 (250)
T ss_pred             HHHHHHHHHHhc-CCeEEEEeCCH
Confidence            999999999954 55 99999984

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.53  E-value=2.7e-14  Score=138.98  Aligned_cols=154  Identities=15%  Similarity=0.170  Sum_probs=93.0

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCC--CcccCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE--GIVKHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~--~~~~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l  107 (454)
                      ..++.-++|+|+||||||||+++|+|..+  +.....+.+.+.+..        ......++++.|.  ... .++.+++
T Consensus        28 i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~ni  106 (251)
T PRK14244         28 IYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFP-KSIYDNV  106 (251)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccccc-CCHHHHH
Confidence            34678899999999999999999999874  110123445543311        1223445555554  222 2666665


Q ss_pred             hcc--ccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHH
Q 012882          108 SGW--ITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFA  173 (454)
Q Consensus       108 ~~~--~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~  173 (454)
                      ...  ........    ..++.++..+++....  ...+......+++++       ++|+.+|+||+||||+ ++|+.+
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~  184 (251)
T PRK14244        107 AYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL--GDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVA  184 (251)
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh--hhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence            221  11111111    1223344444442100  001111233445444       6888999999999999 899999


Q ss_pred             HHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          174 IVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       174 a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      +..+.++|.++.+ |. +|++||+.
T Consensus       185 ~~~l~~~l~~~~~-~~tiiiisH~~  208 (251)
T PRK14244        185 TNVIENLIQELKK-NFTIIVVTHSM  208 (251)
T ss_pred             HHHHHHHHHHHhc-CCeEEEEeCCH
Confidence            9999999999854 56 89999984

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.53  E-value=3.4e-14  Score=138.20  Aligned_cols=156  Identities=15%  Similarity=0.151  Sum_probs=92.9

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCC--CcccCceEEEechh--------HHHHHHHHHHHhhhh-hcccchhhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE--GIVKHRQRFHFHEA--------MLKINEHMHRLWKNQ-VAEKSLRSSIS  108 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~--~~~~~k~rv~f~~f--------~~~~~~~i~~~~~~~-~~~~t~~e~l~  108 (454)
                      ..++.-++|+|+||||||||+++|+|..+  +.....+.+.+.+.        .......+.++.++. ....|+.+++.
T Consensus        27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~  106 (251)
T PRK14251         27 FEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVA  106 (251)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCCCcHHHHHH
Confidence            34677899999999999999999999875  11012334443321        112233455555541 11246777663


Q ss_pred             cccc--CCCCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          109 GWIT--NLPFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       109 ~~~~--~~~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      ....  ......   ..++.++..+++....  ...+......+++++       +||+.+|++|+||||+ ++|+.++.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~  184 (251)
T PRK14251        107 YGLKIAGVKDKELIDQRVEESLKQAAIWKET--KDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSS  184 (251)
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHcCCCcch--HHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHH
Confidence            2111  111111   2233344444431100  001112233444444       6889999999999999 89999999


Q ss_pred             HHHHHHHHHHhCCcEEEEecCC
Q 012882          176 ALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       176 ~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      .+.++|.++.+..++|++||+.
T Consensus       185 ~l~~~l~~~~~~~tiiiisH~~  206 (251)
T PRK14251        185 EIEETLMELKHQYTFIMVTHNL  206 (251)
T ss_pred             HHHHHHHHHHcCCeEEEEECCH
Confidence            9999999986543499999984

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.53  E-value=1.6e-14  Score=136.19  Aligned_cols=135  Identities=17%  Similarity=0.137  Sum_probs=81.2

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-----HHHHHHHHHHhhhhhcccchhhhhhccccCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-----LKINEHMHRLWKNQVAEKSLRSSISGWITNL  114 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-----~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~  114 (454)
                      ..+++-++|+|+||||||||+++|+|..++.....+.+.+.+..     ....+.+.++.++              . ..
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~--------------~-~~   94 (202)
T cd03233          30 VKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEE--------------D-VH   94 (202)
T ss_pred             ECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecc--------------c-cc
Confidence            35678899999999999999999999986210123444443321     0111122232222              1 11


Q ss_pred             CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh
Q 012882          115 PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS  186 (454)
Q Consensus       115 ~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~  186 (454)
                      ....++.+++.......        .......+++++       +||+.+|++|+||||+ ++|+..+..+.+++.++.+
T Consensus        95 ~~~~tv~~~l~~~~~~~--------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~  166 (202)
T cd03233          95 FPTLTVRETLDFALRCK--------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMAD  166 (202)
T ss_pred             CCCCcHHHHHhhhhhhc--------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence            11124444443222110        011122233332       5778999999999999 8999999999999999976


Q ss_pred             C-Cc-EEEEecCC
Q 012882          187 T-GT-VLVATSNR  197 (454)
Q Consensus       187 ~-G~-vlV~ThN~  197 (454)
                      + +. ++|+||+.
T Consensus       167 ~~~~t~ii~~~h~  179 (202)
T cd03233         167 VLKTTTFVSLYQA  179 (202)
T ss_pred             hCCCEEEEEEcCC
Confidence            5 55 66666653

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.53  E-value=7.8e-15  Score=160.50  Aligned_cols=154  Identities=14%  Similarity=0.133  Sum_probs=97.9

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-------------------HHHHH-HHHHHHhhh---
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-------------------MLKIN-EHMHRLWKN---   96 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-------------------~~~~~-~~i~~~~~~---   96 (454)
                      ...+.-++|+|+||||||||+++|+|.+++. .+  .+.+.+.                   +.... ..++++.|.   
T Consensus        39 v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~-~G--~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~  115 (623)
T PRK10261         39 LQRGETLAIVGESGSGKSVTALALMRLLEQA-GG--LVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMT  115 (623)
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHHcCCCCC-Ce--EEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchh
Confidence            3567889999999999999999999998742 33  3332210                   00111 134555553   


Q ss_pred             -hhcccchhhhhhcccc---CCCCCh--HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEe
Q 012882           97 -QVAEKSLRSSISGWIT---NLPFDS--KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCF  163 (454)
Q Consensus        97 -~~~~~t~~e~l~~~~~---~~~~~~--~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~L  163 (454)
                       ..+.+|+.+++.....   ......  ..+.+++..+++...   ...+......|++++       +||+.+|+||+|
T Consensus       116 ~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~---~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLll  192 (623)
T PRK10261        116 SLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA---QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIA  192 (623)
T ss_pred             hcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh---hhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEE
Confidence             2344677777632111   111111  234455555555210   011222344556655       688999999999


Q ss_pred             eCCC-CCCHHHHHHHHHHHHHHHhC-Cc-EEEEecCCCc
Q 012882          164 DEIQ-TVDVFAIVALSGIVSRLLST-GT-VLVATSNRAP  199 (454)
Q Consensus       164 DEp~-~lD~~~a~~L~~ll~~L~~~-G~-vlV~ThN~~P  199 (454)
                      |||+ +||+..+..+.+++.++.++ |. ||++||+...
T Consensus       193 DEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~  231 (623)
T PRK10261        193 DEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGV  231 (623)
T ss_pred             eCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence            9999 89999999999999999754 76 9999999643

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.53  E-value=3.5e-14  Score=129.45  Aligned_cols=118  Identities=17%  Similarity=0.177  Sum_probs=74.4

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChH
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK  119 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~  119 (454)
                      ..++.-++|.|+||||||||+++|+|..++ ..+  .+.+.+.............+.       ..++++          
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G--~v~~~g~~~~~~~~~~~~~~~-------i~~~~q----------   82 (163)
T cd03216          23 VRRGEVHALLGENGAGKSTLMKILSGLYKP-DSG--EILVDGKEVSFASPRDARRAG-------IAMVYQ----------   82 (163)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCe--EEEECCEECCcCCHHHHHhcC-------eEEEEe----------
Confidence            356788999999999999999999999874 233  444432110000000000000       001111          


Q ss_pred             HHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          120 VMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       120 ~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                                +.+   .......+|       +|++.+|++|+||||+ ++|+..+..+.++|.++.++|. +|++||+.
T Consensus        83 ----------LS~---G~~qrl~la-------ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~  142 (163)
T cd03216          83 ----------LSV---GERQMVEIA-------RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL  142 (163)
T ss_pred             ----------cCH---HHHHHHHHH-------HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence                      000   000112233       3456899999999999 8999999999999999987776 88888874

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.53  E-value=8.5e-15  Score=157.36  Aligned_cols=152  Identities=15%  Similarity=0.116  Sum_probs=97.8

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-------HHHHHHHHHHhhh----hhcccchhhhh
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-------LKINEHMHRLWKN----QVAEKSLRSSI  107 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-------~~~~~~i~~~~~~----~~~~~t~~e~l  107 (454)
                      ....++-++|+||||||||||+++|+|.++  ..|...+......       ...+..++++.|.    .....++.+++
T Consensus       308 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l  385 (529)
T PRK15134        308 TLRPGETLGLVGESGSGKSTTGLALLRLIN--SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQII  385 (529)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHH
Confidence            345667799999999999999999999885  2343333221110       0123345666654    23446777776


Q ss_pred             hccc--cC--CCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHH
Q 012882          108 SGWI--TN--LPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFA  173 (454)
Q Consensus       108 ~~~~--~~--~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~  173 (454)
                      ....  ..  ....  ...+++++..+++...     ........+++++       +||+.+|+||+||||+ ++|+..
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~  460 (529)
T PRK15134        386 EEGLRVHQPTLSAAQREQQVIAVMEEVGLDPE-----TRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTV  460 (529)
T ss_pred             HHHHHhccccCChHHHHHHHHHHHHHcCCCHH-----HHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHH
Confidence            3211  11  1111  1334555665555210     1122233455554       6888999999999999 899999


Q ss_pred             HHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          174 IVALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       174 a~~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      +..+.++|.++.++ |. ||++||+.
T Consensus       461 ~~~l~~~l~~~~~~~~~tvi~vsHd~  486 (529)
T PRK15134        461 QAQILALLKSLQQKHQLAYLFISHDL  486 (529)
T ss_pred             HHHHHHHHHHHHHhhCCEEEEEeCCH
Confidence            99999999999764 66 99999985

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.53  E-value=2.5e-14  Score=141.33  Aligned_cols=152  Identities=14%  Similarity=0.159  Sum_probs=95.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhhh-hcccchhhhhhccccCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKNQ-VAEKSLRSSISGWITNL  114 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~~~  114 (454)
                      ..++.-++|+|+||+|||||+++|+|.++  ..|...+.....    ...+.+.+.+++++. ....|+.+++...  . 
T Consensus        27 I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~--~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~--~-  101 (275)
T cd03289          27 ISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPY--G-  101 (275)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHhhhc--c-
Confidence            45678899999999999999999999986  234333333221    123455666666652 1123666766211  1 


Q ss_pred             CCChHHHHHHHHHHhhhhHHhh-cch----HHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882          115 PFDSKVMEWVAAEEKYKQEVQM-KNI----LPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV  181 (454)
Q Consensus       115 ~~~~~~~e~ll~~~~l~~~~~~-~~~----l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll  181 (454)
                      ......+.+.+..+++...... ...    +..-...+++++       ||++.+|+|||||||+ ++|+.+...+.++|
T Consensus       102 ~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l  181 (275)
T cd03289         102 KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTL  181 (275)
T ss_pred             CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHH
Confidence            1233444555555555321110 000    000001144443       7889999999999999 89999999999999


Q ss_pred             HHHHhCCc-EEEEecCC
Q 012882          182 SRLLSTGT-VLVATSNR  197 (454)
Q Consensus       182 ~~L~~~G~-vlV~ThN~  197 (454)
                      ..++. |+ ||++||+.
T Consensus       182 ~~~~~-~~tii~isH~~  197 (275)
T cd03289         182 KQAFA-DCTVILSEHRI  197 (275)
T ss_pred             HHhcC-CCEEEEEECCH
Confidence            98864 55 88889885

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=99.53  E-value=1.9e-14  Score=162.85  Aligned_cols=180  Identities=17%  Similarity=0.155  Sum_probs=137.6

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-----HHHHHHHHHHHhhh--hhcccchhhhh--hc
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-----MLKINEHMHRLWKN--QVAEKSLRSSI--SG  109 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-----~~~~~~~i~~~~~~--~~~~~t~~e~l--~~  109 (454)
                      ..+++..++|.|+||+||||+++++.|..++ ..|...+..++-     +..+++.+++.+|.  ....+|.+|.+  ++
T Consensus       587 ~V~~gecfgLLG~NGAGKtT~f~mltG~~~~-t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~a  665 (885)
T KOG0059|consen  587 AVPPGECFGLLGVNGAGKTTTFKMLTGETKP-TSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYA  665 (885)
T ss_pred             EecCCceEEEecCCCCCchhhHHHHhCCccC-CcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHH
Confidence            3456788999999999999999999999875 344445544432     23478889999987  67788999987  66


Q ss_pred             cccCCCCCh--HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          110 WITNLPFDS--KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       110 ~~~~~~~~~--~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                      ...+.+...  ..++.++..+++....      ..-++.+++++       .|++.+|+++|||||+ ++||.+++.++.
T Consensus       666 rlrG~~~~di~~~v~~ll~~~~L~~~~------~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~  739 (885)
T KOG0059|consen  666 RLRGLPRSDIGSAIEKLLRLVGLGPYA------NKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWD  739 (885)
T ss_pred             HHcCCChhHHHHHHHHHHHHcCChhhh------ccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHH
Confidence            666666543  5677788877775422      11244455554       4788999999999999 999999999999


Q ss_pred             HHHHHHhCCc-EEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCchhhh
Q 012882          180 IVSRLLSTGT-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYR  235 (454)
Q Consensus       180 ll~~L~~~G~-vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~DyR  235 (454)
                      ++.++.++|. +|++||+....|-.++++          .|...++...+++...+.
T Consensus       740 ii~~~~k~g~aiiLTSHsMeE~EaLCtR~----------aImv~G~l~ciGs~q~LK  786 (885)
T KOG0059|consen  740 IIARLRKNGKAIILTSHSMEEAEALCTRT----------AIMVIGQLRCIGSPQELK  786 (885)
T ss_pred             HHHHHHhcCCEEEEEcCCHHHHHHHhhhh----------heeecCeeEEecChHHHH
Confidence            9999999985 999999998888777763          366788888888876554

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.53  E-value=1.6e-14  Score=141.55  Aligned_cols=155  Identities=15%  Similarity=0.160  Sum_probs=92.0

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCc--ccCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGI--VKHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~--~~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l  107 (454)
                      ..++.-++|.|+||||||||+++|+|..++.  +...+.+.+++.-        ....+.+.++.+.  ..+ .|+.+++
T Consensus        30 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl  108 (261)
T PRK14258         30 IYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNV  108 (261)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHHH
Confidence            4567889999999999999999999998742  0112344443211        1223334444443  222 5666665


Q ss_pred             hcccc--CCCCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882          108 SGWIT--NLPFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI  174 (454)
Q Consensus       108 ~~~~~--~~~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a  174 (454)
                      .....  .....   ...+..++..+++....  ..........+++++       ++|+.+|++|+||||+ ++|+..+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~  186 (261)
T PRK14258        109 AYGVKIVGWRPKLEIDDIVESALKDADLWDEI--KHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIAS  186 (261)
T ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHcCCcchh--hhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence            22111  11011   12233444444431100  000111122344443       6888999999999999 8999999


Q ss_pred             HHHHHHHHHHHh-CCc-EEEEecCC
Q 012882          175 VALSGIVSRLLS-TGT-VLVATSNR  197 (454)
Q Consensus       175 ~~L~~ll~~L~~-~G~-vlV~ThN~  197 (454)
                      ..+.++|.++.. .|. +|++||+.
T Consensus       187 ~~l~~~l~~l~~~~~~tiiivsH~~  211 (261)
T PRK14258        187 MKVESLIQSLRLRSELTMVIVSHNL  211 (261)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEECCH
Confidence            999999999864 466 88888874

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.53  E-value=1.4e-14  Score=145.14  Aligned_cols=156  Identities=18%  Similarity=0.203  Sum_probs=93.7

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCc--ccCceEEEechh--------HHHHHHHHHHHhhhh-hcccchhhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGI--VKHRQRFHFHEA--------MLKINEHMHRLWKNQ-VAEKSLRSSIS  108 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~--~~~k~rv~f~~f--------~~~~~~~i~~~~~~~-~~~~t~~e~l~  108 (454)
                      ..+++-++|+|+|||||||||++|+|.+++.  ....+.+.+.+.        .......+.++.+.. ....++.+++.
T Consensus        68 i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~  147 (305)
T PRK14264         68 IPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENIS  147 (305)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccccccHHHHHH
Confidence            3567889999999999999999999987420  012344544321        112334566666552 11246777663


Q ss_pred             ccccC--------------CCCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEee
Q 012882          109 GWITN--------------LPFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFD  164 (454)
Q Consensus       109 ~~~~~--------------~~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LD  164 (454)
                      .....              ....   ...++.++..+++....  ..........+++++       +||+.+|+||+||
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLD  225 (305)
T PRK14264        148 YGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV--NDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMD  225 (305)
T ss_pred             hHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh--hHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            21100              0000   12233344433331100  001111123344443       6888999999999


Q ss_pred             CCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 012882          165 EIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       165 Ep~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      ||+ +||+..+..+.++|.++.+...+|++||+.
T Consensus       226 EPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~  259 (305)
T PRK14264        226 EPASALDPIATSKIEDLIEELAEEYTVVVVTHNM  259 (305)
T ss_pred             CCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCH
Confidence            999 899999999999999997754599999984

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.53  E-value=2.8e-14  Score=131.89  Aligned_cols=107  Identities=19%  Similarity=0.123  Sum_probs=73.6

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChHH
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV  120 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~~  120 (454)
                      +++.-++|+||||||||||+++|+|.+++. .  +.+.++..      .+.++.+...                      
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~--G~i~~~g~------~i~~~~q~~~----------------------   71 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPN-G--DNDEWDGI------TPVYKPQYID----------------------   71 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCCCC-C--cEEEECCE------EEEEEcccCC----------------------
Confidence            467889999999999999999999998742 3  34444321      0122211100                      


Q ss_pred             HHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCC-c-EEEEecCC
Q 012882          121 MEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTG-T-VLVATSNR  197 (454)
Q Consensus       121 ~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G-~-vlV~ThN~  197 (454)
                               +.+   .......+|+       +++.+|++++||||+ ++|+..+..+.+++.++.+++ . +|++||+.
T Consensus        72 ---------LSg---Gq~qrv~lar-------al~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~  132 (177)
T cd03222          72 ---------LSG---GELQRVAIAA-------ALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL  132 (177)
T ss_pred             ---------CCH---HHHHHHHHHH-------HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence                     000   0011123343       445899999999999 899999999999999997764 5 89999984

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.53  E-value=1.6e-14  Score=158.41  Aligned_cols=143  Identities=16%  Similarity=0.200  Sum_probs=95.0

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh---hhcccchhhhhhccccCCCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN---QVAEKSLRSSISGWITNLPF  116 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~---~~~~~t~~e~l~~~~~~~~~  116 (454)
                      ...+.-++|+||||||||||+++|+|.+++. .  +.+.+..-     -.++++.|.   ..+.+|+.+++.........
T Consensus       342 i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~-~--G~i~~~~~-----~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~  413 (635)
T PRK11147        342 VQRGDKIALIGPNGCGKTTLLKLMLGQLQAD-S--GRIHCGTK-----LEVAYFDQHRAELDPEKTVMDNLAEGKQEVMV  413 (635)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-C--cEEEECCC-----cEEEEEeCcccccCCCCCHHHHHHhhcccccc
Confidence            3456679999999999999999999998642 3  34444321     134555543   34456777776332111111


Q ss_pred             C--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh
Q 012882          117 D--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS  186 (454)
Q Consensus       117 ~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~  186 (454)
                      .  ...+..++..+++...     ........|++++       ++|+.+|+||+||||+ +||+.+...|.+++..+  
T Consensus       414 ~~~~~~~~~~l~~~~l~~~-----~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--  486 (635)
T PRK11147        414 NGRPRHVLGYLQDFLFHPK-----RAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY--  486 (635)
T ss_pred             cchHHHHHHHHHhcCCCHH-----HHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--
Confidence            1  2344555555555211     1122345566665       6888999999999999 89999999999999876  


Q ss_pred             CCcEEEEecCC
Q 012882          187 TGTVLVATSNR  197 (454)
Q Consensus       187 ~G~vlV~ThN~  197 (454)
                      .|+||++|||+
T Consensus       487 ~~tvi~vSHd~  497 (635)
T PRK11147        487 QGTVLLVSHDR  497 (635)
T ss_pred             CCeEEEEECCH
Confidence            46799999986

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.52  E-value=1.9e-14  Score=139.96  Aligned_cols=155  Identities=12%  Similarity=0.123  Sum_probs=89.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCC--CcccCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE--GIVKHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~--~~~~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l  107 (454)
                      ..+++-++|+|+||||||||+++|+|..+  +.....+.+.+++..        ......+.++.|+  ... .|+.+++
T Consensus        28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl  106 (252)
T PRK14255         28 FNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENV  106 (252)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHH
Confidence            35677899999999999999999999763  110113445443321        1122334455544  122 4666655


Q ss_pred             hccc--cCCCCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882          108 SGWI--TNLPFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI  174 (454)
Q Consensus       108 ~~~~--~~~~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a  174 (454)
                      ....  .......   ....+.+...++...  ...........+++++       ++|+.+|+||+||||+ ++|+.++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~  184 (252)
T PRK14255        107 IYGLRLAGVKDKAVLDEAVETSLKQAAIWDE--VKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISS  184 (252)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHcCCccc--hhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence            2211  1111111   111222222222100  0001111223344443       6888999999999999 8999999


Q ss_pred             HHHHHHHHHHHhCCcEEEEecCC
Q 012882          175 VALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       175 ~~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      ..+.++|.++.+..++|++||+.
T Consensus       185 ~~l~~~l~~~~~~~tii~vsH~~  207 (252)
T PRK14255        185 TQIENMLLELRDQYTIILVTHSM  207 (252)
T ss_pred             HHHHHHHHHHHhCCEEEEEECCH
Confidence            99999999997654599999984

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.52  E-value=2.8e-14  Score=155.95  Aligned_cols=156  Identities=13%  Similarity=0.128  Sum_probs=105.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---HHHHHHHHHHhhh--hhcccchhhhh-hccccC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---LKINEHMHRLWKN--QVAEKSLRSSI-SGWITN  113 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---~~~~~~i~~~~~~--~~~~~t~~e~l-~~~~~~  113 (454)
                      .++++-++|+||||||||||+++|+|..++.....+.+.+++..   ...++.++++.|+  ..+.+|+.|++ ++....
T Consensus        48 i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~  127 (617)
T TIGR00955        48 AKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLR  127 (617)
T ss_pred             EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcC
Confidence            35667799999999999999999999876421224556555432   2455667888777  46678999988 332222


Q ss_pred             CCC--C--h--HHHHHHHHHHhhhhHHhhcchHHH--HHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882          114 LPF--D--S--KVMEWVAAEEKYKQEVQMKNILPA--VADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL  177 (454)
Q Consensus       114 ~~~--~--~--~~~e~ll~~~~l~~~~~~~~~l~~--va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L  177 (454)
                      .+.  .  .  ..+++++..+++....+  ..+..  ..+.+++++       ++|+.+|++|+||||+ +||..++..+
T Consensus       128 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~--t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l  205 (617)
T TIGR00955       128 MPRRVTKKEKRERVDEVLQALGLRKCAN--TRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSV  205 (617)
T ss_pred             CCCCCCHHHHHHHHHHHHHHcCchhcCc--CccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHH
Confidence            221  1  1  34566677666643211  11100  012355554       6888999999999999 9999999999


Q ss_pred             HHHHHHHHhCCc-EEEEecCC
Q 012882          178 SGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       178 ~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      .+.++.+.++|+ +|++||+.
T Consensus       206 ~~~L~~l~~~g~tvi~~~hq~  226 (617)
T TIGR00955       206 VQVLKGLAQKGKTIICTIHQP  226 (617)
T ss_pred             HHHHHHHHhCCCEEEEEeCCC
Confidence            999999988788 66666663

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.52  E-value=2.4e-14  Score=140.56  Aligned_cols=156  Identities=18%  Similarity=0.212  Sum_probs=92.4

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc--cCceEEEechhH----------HHHHHHHHHHhhh--hhcccchh
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEAM----------LKINEHMHRLWKN--QVAEKSLR  104 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~--~~k~rv~f~~f~----------~~~~~~i~~~~~~--~~~~~t~~  104 (454)
                      ...+++-++|+|+||||||||+++|+|..++..  ...+.+.++..-          ......++++.++  ... .++.
T Consensus        38 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~  116 (265)
T PRK14252         38 MVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFP-KSIF  116 (265)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCc-chHH
Confidence            345678899999999999999999999875310  023455553210          1223345555554  222 2666


Q ss_pred             hhhhccc--cCCCCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCH
Q 012882          105 SSISGWI--TNLPFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDV  171 (454)
Q Consensus       105 e~l~~~~--~~~~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~  171 (454)
                      +++....  ......   .+..+..+...++..  ...+........+++++       ++|+.+|++|+||||+ ++|+
T Consensus       117 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~  194 (265)
T PRK14252        117 ENVAYGLRIRGVKRRSILEERVENALRNAALWD--EVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDP  194 (265)
T ss_pred             HHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch--hhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCH
Confidence            6652211  111110   122233333333210  00011111223344443       6888999999999999 8999


Q ss_pred             HHHHHHHHHHHHHHhCCcEEEEecCC
Q 012882          172 FAIVALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       172 ~~a~~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      ..+..+.++|.++.....+|++||+.
T Consensus       195 ~~~~~l~~~l~~l~~~~tiiivth~~  220 (265)
T PRK14252        195 IATASIEELISDLKNKVTILIVTHNM  220 (265)
T ss_pred             HHHHHHHHHHHHHHhCCEEEEEecCH
Confidence            99999999999997643499999984

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.52  E-value=2.5e-14  Score=140.93  Aligned_cols=156  Identities=15%  Similarity=0.147  Sum_probs=90.3

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCC--CcccCceEEEech--h------HHHHHHHHHHHhhhh-hcccchhhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE--GIVKHRQRFHFHE--A------MLKINEHMHRLWKNQ-VAEKSLRSSIS  108 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~--~~~~~k~rv~f~~--f------~~~~~~~i~~~~~~~-~~~~t~~e~l~  108 (454)
                      ..++.-++|+|+||||||||+++|+|.++  +.....+.+.+++  .      .......++++.|.. ....|+.+++.
T Consensus        47 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~  126 (271)
T PRK14238         47 IHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVT  126 (271)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccccHHHHHH
Confidence            45678899999999999999999999875  1001223444432  1      112334455655541 11136666652


Q ss_pred             ccccC-CCCChHH----HHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          109 GWITN-LPFDSKV----MEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       109 ~~~~~-~~~~~~~----~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      ..... ...+...    +.+.+..+++..  +....+......+++++       ++|+.+|+|||||||+ ++|+.++.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~  204 (271)
T PRK14238        127 YGPKIHGIKDKKTLDEIVEKSLRGAAIWD--ELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTL  204 (271)
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHcCCcc--hHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHH
Confidence            21110 0011111    122222221100  00011111223344443       6888999999999999 89999999


Q ss_pred             HHHHHHHHHHhCCcEEEEecCC
Q 012882          176 ALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       176 ~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      .+.++|.++.+..++|++||+.
T Consensus       205 ~l~~~l~~~~~~~tiiivsH~~  226 (271)
T PRK14238        205 KVEELVQELKKDYSIIIVTHNM  226 (271)
T ss_pred             HHHHHHHHHHcCCEEEEEEcCH
Confidence            9999999997633389999974

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.52  E-value=4.7e-14  Score=125.78  Aligned_cols=150  Identities=16%  Similarity=0.153  Sum_probs=94.5

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----------HHHHHHHHHHHhhh--hhcccchhhhhh
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----------MLKINEHMHRLWKN--QVAEKSLRSSIS  108 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----------~~~~~~~i~~~~~~--~~~~~t~~e~l~  108 (454)
                      +.+..+.|+||+|+|||||++.+.=.--+ ..+.-.+..+.|          ...+++.++.+.|+  +.+.+|+.+++.
T Consensus        26 ~~getlvllgpsgagkssllr~lnlle~p-~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enli  104 (242)
T COG4161          26 PEGETLVLLGPSGAGKSSLLRVLNLLEMP-RSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLI  104 (242)
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHhCC-CCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHH
Confidence            35667999999999999999998532211 223333322222          23455556665554  456667777663


Q ss_pred             cccc---CCCCCh--HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          109 GWIT---NLPFDS--KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       109 ~~~~---~~~~~~--~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      ..+.   +++.++  ..+.+++..+++.+..      .+..-.+++++       |||+.+|++|+||||+ .+|+.-..
T Consensus       105 eap~kv~gl~~~qa~~~a~ellkrlrl~~~a------dr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeita  178 (242)
T COG4161         105 EAPCRVLGLSKDQALARAEKLLKRLRLKPYA------DRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITA  178 (242)
T ss_pred             hhhHHHhCCCHHHHHHHHHHHHHHhcccccc------ccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHH
Confidence            3222   222222  3334444444442211      01111123332       6888999999999999 89999999


Q ss_pred             HHHHHHHHHHhCCc-EEEEecCC
Q 012882          176 ALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       176 ~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      .+..++++|...|. -+|+||..
T Consensus       179 qvv~iikel~~tgitqvivthev  201 (242)
T COG4161         179 QIVSIIKELAETGITQVIVTHEV  201 (242)
T ss_pred             HHHHHHHHHHhcCceEEEEEeeh
Confidence            99999999999999 88999975

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.52  E-value=4e-14  Score=153.98  Aligned_cols=153  Identities=18%  Similarity=0.161  Sum_probs=106.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITNL  114 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~  114 (454)
                      .++++-++|+|++|||||||+++|.|.. | ..|...+...+.    ...+++.+.+++|+ ..-+.|+.+|+....  .
T Consensus       373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p-~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~--~  448 (588)
T PRK11174        373 LPAGQRIALVGPSGAGKTSLLNALLGFL-P-YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGN--P  448 (588)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC-C-CCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCC--C
Confidence            3567779999999999999999999998 4 345444433221    23567788888887 334568889884432  1


Q ss_pred             CCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882          115 PFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV  181 (454)
Q Consensus       115 ~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll  181 (454)
                      ..+.+..++.+...++...-     +.+..+.+-...+++++       |||+++|+||+||||| .+|..+...+.+.+
T Consensus       449 ~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l  528 (588)
T PRK11174        449 DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQAL  528 (588)
T ss_pred             CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence            24455555555555554311     11122222233466665       7999999999999999 89999999999999


Q ss_pred             HHHHhCCcEEEEecC
Q 012882          182 SRLLSTGTVLVATSN  196 (454)
Q Consensus       182 ~~L~~~G~vlV~ThN  196 (454)
                      .++.+..++|++||+
T Consensus       529 ~~~~~~~TvIiItHr  543 (588)
T PRK11174        529 NAASRRQTTLMVTHQ  543 (588)
T ss_pred             HHHhCCCEEEEEecC
Confidence            888654459999997

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.52  E-value=2.3e-14  Score=142.37  Aligned_cols=156  Identities=15%  Similarity=0.146  Sum_probs=93.4

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCC--CcccCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhh
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE--GIVKHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSS  106 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~--~~~~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~  106 (454)
                      ...++.-++|+|+||||||||+++|+|..+  +.....+.|.+++..        ...+..++++.++  ... .++.++
T Consensus        61 ~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~en  139 (286)
T PRK14275         61 DILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFP-KSIFDN  139 (286)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCc-cCHHHH
Confidence            345678899999999999999999999753  100123455554321        1233455566554  222 367776


Q ss_pred             hhcccc--CCCCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHH
Q 012882          107 ISGWIT--NLPFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFA  173 (454)
Q Consensus       107 l~~~~~--~~~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~  173 (454)
                      +.....  ......   ....+++..+++...  ..+........+++++       +||+.+|++|+||||+ +||+..
T Consensus       140 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~  217 (286)
T PRK14275        140 IAYGPRLHGINDKKQLEEIVEKSLRKAALWDE--VSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKA  217 (286)
T ss_pred             HHhHHHhcCCCcHHHHHHHHHHHHHHhCCccc--hhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence            632111  111111   122233333332100  0011112233445444       6889999999999999 899999


Q ss_pred             HHHHHHHHHHHHhCCcEEEEecCC
Q 012882          174 IVALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       174 a~~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      +..+.++|..+.....||++||+.
T Consensus       218 ~~~l~~~L~~~~~~~tvIivsH~~  241 (286)
T PRK14275        218 TAKIEDLIQELRGSYTIMIVTHNM  241 (286)
T ss_pred             HHHHHHHHHHHhcCCeEEEEeCCH
Confidence            999999999986543489999974

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.52  E-value=3.6e-14  Score=152.43  Aligned_cols=155  Identities=15%  Similarity=0.132  Sum_probs=104.5

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEec---hhHHHHHHHHHHHhhh-hhcccchhhhhhccccCC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFH---EAMLKINEHMHRLWKN-QVAEKSLRSSISGWITNL  114 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~---~f~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~  114 (454)
                      ..++++-++|+||+|||||||+++|.|..++. .|...+...   +...++++.+++++|+ ..-..|+.+|+....  .
T Consensus       357 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~-~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~--~  433 (529)
T TIGR02868       357 DLPPGERVAILGPSGSGKSTLLMLLTGLLDPL-QGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGR--P  433 (529)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccC--C
Confidence            34567889999999999999999999998752 444443322   1223456677888887 334568888884321  1


Q ss_pred             CCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882          115 PFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV  181 (454)
Q Consensus       115 ~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll  181 (454)
                      ..+++...+.+...++.+.-     +.+..+.+-...+++++       ||++++|+||+||||| .+|..+...+.+.+
T Consensus       434 ~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l  513 (529)
T TIGR02868       434 DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDL  513 (529)
T ss_pred             CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            12445555555555553311     11112222223456555       7999999999999999 89999999999999


Q ss_pred             HHHHhCCcEEEEecC
Q 012882          182 SRLLSTGTVLVATSN  196 (454)
Q Consensus       182 ~~L~~~G~vlV~ThN  196 (454)
                      ..+.+..++|++||+
T Consensus       514 ~~~~~~~TvIiItHr  528 (529)
T TIGR02868       514 LAALSGKTVVVITHH  528 (529)
T ss_pred             HHhcCCCEEEEEecC
Confidence            887554459999986

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.52  E-value=4.4e-14  Score=153.01  Aligned_cols=156  Identities=18%  Similarity=0.147  Sum_probs=106.7

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITNL  114 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~  114 (454)
                      .++++-++|+|+||+|||||+++|.|..++. .|...+...+.    ..+.++.+.+++|+ ...+.|+.+|+..... .
T Consensus       355 i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~-~  432 (571)
T TIGR02203       355 IEPGETVALVGRSGSGKSTLVNLIPRFYEPD-SGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRT-E  432 (571)
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHHhccCCC-CCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCC-C
Confidence            4567889999999999999999999998742 44444433222    13456778888887 3445688888743321 1


Q ss_pred             CCChHHHHHHHHHHhhhhHHh-----hcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882          115 PFDSKVMEWVAAEEKYKQEVQ-----MKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV  181 (454)
Q Consensus       115 ~~~~~~~e~ll~~~~l~~~~~-----~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll  181 (454)
                      ..+.+...+.+...++.....     .+..+..-...+++++       ||++++|+||+||||+ .+|..+...+.+.|
T Consensus       433 ~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L  512 (571)
T TIGR02203       433 QADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAAL  512 (571)
T ss_pred             CCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence            234555666666666543211     1111222223455554       7999999999999999 89999999999999


Q ss_pred             HHHHhCCcEEEEecCC
Q 012882          182 SRLLSTGTVLVATSNR  197 (454)
Q Consensus       182 ~~L~~~G~vlV~ThN~  197 (454)
                      ..+.+..++|++||+.
T Consensus       513 ~~~~~~~tiIiitH~~  528 (571)
T TIGR02203       513 ERLMQGRTTLVIAHRL  528 (571)
T ss_pred             HHHhCCCEEEEEehhh
Confidence            9886554599999984

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.52  E-value=8.2e-15  Score=160.66  Aligned_cols=142  Identities=15%  Similarity=0.168  Sum_probs=89.4

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhh----hcccchhhhhhccccCCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQ----VAEKSLRSSISGWITNLP  115 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~----~~~~t~~e~l~~~~~~~~  115 (454)
                      ..++.-++|+||||||||||+++|+|.+++ ..|  .|.+..-     ..++++.|..    ....++.+++...  ...
T Consensus       335 i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p-~~G--~i~~~~~-----~~igy~~Q~~~~~l~~~~~~~~~~~~~--~~~  404 (638)
T PRK10636        335 LVPGSRIGLLGRNGAGKSTLIKLLAGELAP-VSG--EIGLAKG-----IKLGYFAQHQLEFLRADESPLQHLARL--APQ  404 (638)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCC--eEEECCC-----EEEEEecCcchhhCCccchHHHHHHHh--Cch
Confidence            345677999999999999999999999864 233  3333210     0223333321    1112222222110  001


Q ss_pred             CChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC
Q 012882          116 FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST  187 (454)
Q Consensus       116 ~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~  187 (454)
                      .....++.++..+++...     ........|++++       ++++.+|+||+||||| +||+.+...|.++|..+  .
T Consensus       405 ~~~~~~~~~L~~~~l~~~-----~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~  477 (638)
T PRK10636        405 ELEQKLRDYLGGFGFQGD-----KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--E  477 (638)
T ss_pred             hhHHHHHHHHHHcCCChh-----HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C
Confidence            112345566666655321     1122344556554       6888999999999999 89999999999999987  4


Q ss_pred             CcEEEEecCCC
Q 012882          188 GTVLVATSNRA  198 (454)
Q Consensus       188 G~vlV~ThN~~  198 (454)
                      |+||++||++.
T Consensus       478 gtvi~vSHd~~  488 (638)
T PRK10636        478 GALVVVSHDRH  488 (638)
T ss_pred             CeEEEEeCCHH
Confidence            67999999863

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.52  E-value=3.7e-14  Score=154.29  Aligned_cols=162  Identities=19%  Similarity=0.241  Sum_probs=115.4

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---HHHHHHHHHHHhhh--hhcccchhhhh-hccccC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---MLKINEHMHRLWKN--QVAEKSLRSSI-SGWITN  113 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---~~~~~~~i~~~~~~--~~~~~t~~e~l-~~~~~~  113 (454)
                      ..+++-++|+||+||||||||++|+|..++...-.+.+..++.   ....++..+++.|+  ..+.+||.|++ ++....
T Consensus        53 ~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lr  132 (613)
T KOG0061|consen   53 AKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLR  132 (613)
T ss_pred             EecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhc
Confidence            3567889999999999999999999988742223455555552   23455666778777  57889999998 443333


Q ss_pred             CCCC------hHHHHHHHHHHhhhhHHh--hcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882          114 LPFD------SKVMEWVAAEEKYKQEVQ--MKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL  177 (454)
Q Consensus       114 ~~~~------~~~~e~ll~~~~l~~~~~--~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L  177 (454)
                      .+..      ..++++++..+++..-.+  ....  .. +.+++++       ..|+.+|.||++|||| +||..+|..+
T Consensus       133 lp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~--~~-rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~v  209 (613)
T KOG0061|consen  133 LPSSLSKEEKRERVEEVISELGLEKCADTLIGNP--GI-RGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQV  209 (613)
T ss_pred             CCCCCCHHHHHHHHHHHHHHcCChhhccceecCC--CC-CccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHH
Confidence            3331      267788888888753211  0000  00 2233333       3567999999999999 9999999999


Q ss_pred             HHHHHHHHhCCcEEEEecCCCccchhc
Q 012882          178 SGIVSRLLSTGTVLVATSNRAPWDLNQ  204 (454)
Q Consensus       178 ~~ll~~L~~~G~vlV~ThN~~P~dLy~  204 (454)
                      .++|+++++.|++||+|-+.|..+++.
T Consensus       210 v~~Lk~lA~~grtVi~tIHQPss~lf~  236 (613)
T KOG0061|consen  210 VQLLKRLARSGRTVICTIHQPSSELFE  236 (613)
T ss_pred             HHHHHHHHhCCCEEEEEEeCCcHHHHH
Confidence            999999999999888888888877774

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.52  E-value=5.9e-14  Score=133.53  Aligned_cols=145  Identities=12%  Similarity=0.041  Sum_probs=85.9

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChH
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK  119 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~  119 (454)
                      .+.++-++|+||||||||||+++|+|..++ ..|... .++.....    +.. .....+.+|+.+++.........+..
T Consensus        10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~sG~i~-~~~~~~~~----~~~-~~~l~~~ltv~enl~~~~~~~~~~~~   82 (213)
T PRK15177         10 MGYHEHIGILAAPGSGKTTLTRLLCGLDAP-DEGDFI-GLRGDALP----LGA-NSFILPGLTGEENARMMASLYGLDGD   82 (213)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCccC-CCCCEE-EecCceec----ccc-ccccCCcCcHHHHHHHHHHHcCCCHH
Confidence            346788999999999999999999999864 234332 12221110    111 01134556777776221111111221


Q ss_pred             -HHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcE
Q 012882          120 -VMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTV  190 (454)
Q Consensus       120 -~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~v  190 (454)
                       ..+.+....++..      ........+++++       +|++.+|++|+||||+ ++|...+..+.+++.+..+...+
T Consensus        83 ~~~~~~~~~~~l~~------~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~i  156 (213)
T PRK15177         83 EFSHFCYQLTQLEQ------CYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGL  156 (213)
T ss_pred             HHHHHHHHHhChhH------HhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcE
Confidence             2222222222211      1122333444443       6888999999999998 89999999999877554433348


Q ss_pred             EEEecCC
Q 012882          191 LVATSNR  197 (454)
Q Consensus       191 lV~ThN~  197 (454)
                      |++||+.
T Consensus       157 i~vsH~~  163 (213)
T PRK15177        157 IVLTHNP  163 (213)
T ss_pred             EEEECCH
Confidence            8999985

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.51  E-value=1.8e-14  Score=154.85  Aligned_cols=142  Identities=18%  Similarity=0.243  Sum_probs=94.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhh----hcccchhhhhhccccCCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQ----VAEKSLRSSISGWITNLP  115 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~----~~~~t~~e~l~~~~~~~~  115 (454)
                      ...+.-++|+||||||||||+++|+|..++.   .+.+.++.     ...++++.|..    ....++.+++.... ...
T Consensus       342 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~-----~~~i~~~~q~~~~~~~~~~t~~~~~~~~~-~~~  412 (530)
T PRK15064        342 LEAGERLAIIGENGVGKTTLLRTLVGELEPD---SGTVKWSE-----NANIGYYAQDHAYDFENDLTLFDWMSQWR-QEG  412 (530)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECC-----ceEEEEEcccccccCCCCCcHHHHHHHhc-cCC
Confidence            3466779999999999999999999988642   34555443     12355555542    23356666653211 111


Q ss_pred             CChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC
Q 012882          116 FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST  187 (454)
Q Consensus       116 ~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~  187 (454)
                      .....++.++..+++...     ........+++++       ++++.+|+||+||||+ +||+..+..+.++|..+  .
T Consensus       413 ~~~~~~~~~l~~~~l~~~-----~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~  485 (530)
T PRK15064        413 DDEQAVRGTLGRLLFSQD-----DIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--E  485 (530)
T ss_pred             ccHHHHHHHHHHcCCChh-----HhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--C
Confidence            223445666666655210     1122334455554       6888999999999999 89999999999999887  4


Q ss_pred             CcEEEEecCC
Q 012882          188 GTVLVATSNR  197 (454)
Q Consensus       188 G~vlV~ThN~  197 (454)
                      ++||++|||.
T Consensus       486 ~tvi~vsHd~  495 (530)
T PRK15064        486 GTLIFVSHDR  495 (530)
T ss_pred             CEEEEEeCCH
Confidence            5699999985

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.51  E-value=2.4e-14  Score=153.93  Aligned_cols=157  Identities=15%  Similarity=0.128  Sum_probs=97.4

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc--cCceEEEechhH------HH---HH-HHHHHHhhhh----hcccch
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEAM------LK---IN-EHMHRLWKNQ----VAEKSL  103 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~--~~k~rv~f~~f~------~~---~~-~~i~~~~~~~----~~~~t~  103 (454)
                      ...+.-++|+||||||||||+++|+|.+++..  ...+.+.+++..      ..   .. +.++++.|..    .+..++
T Consensus        32 i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~  111 (529)
T PRK15134         32 IEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTL  111 (529)
T ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhH
Confidence            34677899999999999999999999987410  023444443211      01   11 2355555542    222455


Q ss_pred             hhhhhccc---cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCC
Q 012882          104 RSSISGWI---TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVD  170 (454)
Q Consensus       104 ~e~l~~~~---~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD  170 (454)
                      .+++....   ......  ...+++++..+++....   .........+++++       +||+.+|+||+||||+ +||
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~---~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD  188 (529)
T PRK15134        112 EKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA---KRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALD  188 (529)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH---HHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccC
Confidence            55543111   111111  13345555555552100   01122344555554       6889999999999999 899


Q ss_pred             HHHHHHHHHHHHHHHhC-Cc-EEEEecCCCc
Q 012882          171 VFAIVALSGIVSRLLST-GT-VLVATSNRAP  199 (454)
Q Consensus       171 ~~~a~~L~~ll~~L~~~-G~-vlV~ThN~~P  199 (454)
                      +..+..+.++|.++.++ |. ||++||+...
T Consensus       189 ~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~  219 (529)
T PRK15134        189 VSVQAQILQLLRELQQELNMGLLFITHNLSI  219 (529)
T ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEcCcHHH
Confidence            99999999999999765 66 9999999653

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.51  E-value=1.7e-13  Score=122.96  Aligned_cols=150  Identities=17%  Similarity=0.170  Sum_probs=105.2

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh-hhcccchhhhh-hcc-
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN-QVAEKSLRSSI-SGW-  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~-~~~~~t~~e~l-~~~-  110 (454)
                      ..++.-+.|.||+|||||||+++++..+++. .  +.+.|.+-      ....+..+.|+.|. -.-.-|+.+|+ |-| 
T Consensus        26 v~~Ge~iaitGPSG~GKStllk~va~Lisp~-~--G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~  102 (223)
T COG4619          26 VRAGEFIAITGPSGCGKSTLLKIVASLISPT-S--GTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQ  102 (223)
T ss_pred             ecCCceEEEeCCCCccHHHHHHHHHhccCCC-C--ceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchH
Confidence            4567889999999999999999999998753 3  34444321      23567788888876 22345777776 433 


Q ss_pred             ccCCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882          111 ITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS  182 (454)
Q Consensus       111 ~~~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~  182 (454)
                      .....++...+-.++..+++..     ..+..-+..++++.       |.|.--|+||+|||+| .||+.++..+.+++-
T Consensus       103 ~r~rr~dr~aa~~llar~~l~~-----~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~  177 (223)
T COG4619         103 IRNRRPDRAAALDLLARFALPD-----SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIH  177 (223)
T ss_pred             HhccCCChHHHHHHHHHcCCch-----hhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHH
Confidence            2333445566666666666633     12222333444443       4556789999999999 799999999999998


Q ss_pred             HHH-hCCc-EEEEecCC
Q 012882          183 RLL-STGT-VLVATSNR  197 (454)
Q Consensus       183 ~L~-~~G~-vlV~ThN~  197 (454)
                      .++ ++.+ ++-+||+.
T Consensus       178 ~~v~~q~vAv~WiTHd~  194 (223)
T COG4619         178 RYVREQNVAVLWITHDK  194 (223)
T ss_pred             HHhhhhceEEEEEecCh
Confidence            888 5666 99999984

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.51  E-value=2.3e-14  Score=139.32  Aligned_cols=154  Identities=15%  Similarity=0.181  Sum_probs=91.3

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCC--CcccCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE--GIVKHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~--~~~~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l  107 (454)
                      ..++.-++|+|+||+|||||+++|+|...  +.....+.+.+++..        ....+.+.+++++  ... .++.+++
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~nl  104 (250)
T PRK14266         26 IPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFP-KSIFDNV  104 (250)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCc-chHHHHH
Confidence            34678899999999999999999999753  110123344443311        1234456666655  222 3666665


Q ss_pred             hccccCC-CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882          108 SGWITNL-PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI  174 (454)
Q Consensus       108 ~~~~~~~-~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a  174 (454)
                      ....... ..+.    ..+.+++..+++....  ..........+++++       +||+.+|+||+||||+ ++|+.+.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l--~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~  182 (250)
T PRK14266        105 AYGLRIHGEDDEDFIEERVEESLKAAALWDEV--KDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPIST  182 (250)
T ss_pred             HhHHhhcCCCCHHHHHHHHHHHHHHcCCchhH--HHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHH
Confidence            2211110 1111    2223333333331100  000111122344443       6888999999999999 8999999


Q ss_pred             HHHHHHHHHHHhCCc-EEEEecCC
Q 012882          175 VALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       175 ~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      ..+.++|.++.+ |. +|++||+.
T Consensus       183 ~~l~~~l~~~~~-~~tiii~sh~~  205 (250)
T PRK14266        183 TKIEDLIHKLKE-DYTIVIVTHNM  205 (250)
T ss_pred             HHHHHHHHHHhc-CCeEEEEECCH
Confidence            999999999965 55 89999974

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.51  E-value=5.7e-14  Score=154.13  Aligned_cols=153  Identities=16%  Similarity=0.186  Sum_probs=102.2

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh-hhcccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN-QVAEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~  112 (454)
                      .++++-++|+|+||||||||+|++.|...|. .|  ++.+++.      ...+++.++++.|+ .....|+.||+..+..
T Consensus       496 I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~-~G--~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p  572 (709)
T COG2274         496 IPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ-QG--RILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNP  572 (709)
T ss_pred             eCCCCEEEEECCCCCCHHHHHHHHhcCCCCC-Cc--eEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCC
Confidence            3456669999999999999999999998753 44  4444432      24677888888887 4556688888744332


Q ss_pred             CCCCChHHHHHHHHHHhhhh-----HHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          113 NLPFDSKVMEWVAAEEKYKQ-----EVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       113 ~~~~~~~~~e~ll~~~~l~~-----~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                      ... +++.. ..+...+.+.     ..+.+..+.+-...+++++       |||+++|+||+|||+| .+|..+.+++.+
T Consensus       573 ~~~-~e~i~-~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~  650 (709)
T COG2274         573 EAT-DEEII-EAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQ  650 (709)
T ss_pred             CCC-HHHHH-HHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHH
Confidence            222 11111 1111111111     0111222233333455555       7899999999999999 899999999999


Q ss_pred             HHHHHHhCCcEEEEecCC
Q 012882          180 IVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       180 ll~~L~~~G~vlV~ThN~  197 (454)
                      -|.++....++|++||+.
T Consensus       651 ~L~~~~~~~T~I~IaHRl  668 (709)
T COG2274         651 NLLQILQGRTVIIIAHRL  668 (709)
T ss_pred             HHHHHhcCCeEEEEEccc
Confidence            999987655599999974

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.51  E-value=4.7e-14  Score=142.81  Aligned_cols=156  Identities=17%  Similarity=0.180  Sum_probs=95.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCc--ccCceEEEechhH--------HHHHHHHHHHhhhh-hcccchhhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGI--VKHRQRFHFHEAM--------LKINEHMHRLWKNQ-VAEKSLRSSIS  108 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~--~~~k~rv~f~~f~--------~~~~~~i~~~~~~~-~~~~t~~e~l~  108 (454)
                      ..+++-++|+|+||||||||+++|+|..+..  ....+.+.+.+.-        ..++..+.+++|.. ....|+.+++.
T Consensus       105 I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~  184 (329)
T PRK14257        105 IKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVA  184 (329)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHH
Confidence            4567789999999999999999999987520  0123444443211        23445566666651 22357777763


Q ss_pred             ccc-cCCCCChH----HHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          109 GWI-TNLPFDSK----VMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       109 ~~~-~~~~~~~~----~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      ... .....+..    ..+..+...++...  ....+..-...+++++       ||++.+|+||+||||+ ++|+.+..
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~--l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~  262 (329)
T PRK14257        185 YGPRNNGINDRKILEKIVEKSLKSAALWDE--VKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATA  262 (329)
T ss_pred             hHHHhcCCChHHHHHHHHHHHHHHcCCcch--hhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHH
Confidence            211 11011111    12333333333110  0111122233445554       7889999999999999 89999999


Q ss_pred             HHHHHHHHHHhCCcEEEEecCC
Q 012882          176 ALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       176 ~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      .+.++|..+.+..++|++||+.
T Consensus       263 ~i~~~i~~l~~~~Tii~iTH~l  284 (329)
T PRK14257        263 KIEELILELKKKYSIIIVTHSM  284 (329)
T ss_pred             HHHHHHHHHhcCCEEEEEeCCH
Confidence            9999999998754499999984

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.51  E-value=7.7e-14  Score=136.38  Aligned_cols=149  Identities=15%  Similarity=0.179  Sum_probs=85.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEE---------EechhH-HHHHHH-------HHHHhhh--hhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRF---------HFHEAM-LKINEH-------MHRLWKN--QVAE  100 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv---------~f~~f~-~~~~~~-------i~~~~~~--~~~~  100 (454)
                      ..+++-++|+||||||||||+++|+|..++. .|...+         .+.+.. ......       +.++.+.  ..+ 
T Consensus        23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~-~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~-  100 (255)
T cd03236          23 PREGQVLGLVGPNGIGKSTALKILAGKLKPN-LGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIP-  100 (255)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCcCCC-CceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCc-
Confidence            3467889999999999999999999998752 343320         011110 000000       0111111  000 


Q ss_pred             cchhhhhhccccCCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHH
Q 012882          101 KSLRSSISGWITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVF  172 (454)
Q Consensus       101 ~t~~e~l~~~~~~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~  172 (454)
                      .++.+++..... ........++++..+++..      ........+++++       ++++.+|++++||||+ ++|+.
T Consensus       101 ~~~~~~i~~~l~-~~~~~~~~~~~l~~~gl~~------~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~  173 (255)
T cd03236         101 KAVKGKVGELLK-KKDERGKLDELVDQLELRH------VLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIK  173 (255)
T ss_pred             hHHHHHHHHHhc-hhHHHHHHHHHHHHcCCch------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHH
Confidence            111222211110 0011133444444444422      1122233344443       6888999999999999 89999


Q ss_pred             HHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          173 AIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       173 ~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      .+..+..++.++.++|. +|++||+.
T Consensus       174 ~~~~l~~~l~~l~~~~~tIIiiSHd~  199 (255)
T cd03236         174 QRLNAARLIRELAEDDNYVLVVEHDL  199 (255)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEECCH
Confidence            99999999999987776 88899874

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.50  E-value=4.1e-14  Score=137.24  Aligned_cols=46  Identities=15%  Similarity=0.172  Sum_probs=42.1

Q ss_pred             hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          152 HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       152 rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      +|++.+|+||+||||+ ++|+.++..+.++|..+.+.|. ||++||+.
T Consensus       158 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~  205 (248)
T PRK09580        158 QMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQ  205 (248)
T ss_pred             HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            6888999999999999 8999999999999999987766 89999984

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.50  E-value=1.4e-13  Score=123.99  Aligned_cols=151  Identities=13%  Similarity=0.115  Sum_probs=98.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH---HHH-----HHHHHHhhh--hhcccchhhhhhc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML---KIN-----EHMHRLWKN--QVAEKSLRSSISG  109 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~---~~~-----~~i~~~~~~--~~~~~t~~e~l~~  109 (454)
                      ..++..+.|+||+|+||||||-+++|.-.+ ..+..++..+....   +..     +.++.+.|.  +.+.++..||+.-
T Consensus        33 v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~-ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~l  111 (228)
T COG4181          33 VKRGETVAIVGPSGSGKSTLLAVLAGLDDP-SSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVAL  111 (228)
T ss_pred             ecCCceEEEEcCCCCcHHhHHHHHhcCCCC-CCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccc
Confidence            356788999999999999999999998764 35666665543321   111     112223333  3455566666521


Q ss_pred             --cccC--CCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882          110 --WITN--LPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL  177 (454)
Q Consensus       110 --~~~~--~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L  177 (454)
                        .+.+  .......+..+++..++...      +.....+++++.       ||++..|+||+-|||| +||-++...+
T Consensus       112 PleL~ge~~~~~~~~A~~lL~~vGLg~R------l~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~i  185 (228)
T COG4181         112 PLELRGESSADSRAGAKALLEAVGLGKR------LTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKI  185 (228)
T ss_pred             hhhhcCCccccHHHHHHHHHHHhCcccc------cccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHH
Confidence              2222  12222445566666665332      222333444432       6788999999999999 6999999999


Q ss_pred             HHHHHHHHh-CCc-EEEEecCC
Q 012882          178 SGIVSRLLS-TGT-VLVATSNR  197 (454)
Q Consensus       178 ~~ll~~L~~-~G~-vlV~ThN~  197 (454)
                      .+++-.+.. +|. .+++||+.
T Consensus       186 aDLlF~lnre~G~TlVlVTHD~  207 (228)
T COG4181         186 ADLLFALNRERGTTLVLVTHDP  207 (228)
T ss_pred             HHHHHHHhhhcCceEEEEeCCH
Confidence            999988875 577 88899984

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.50  E-value=2.9e-14  Score=154.17  Aligned_cols=143  Identities=17%  Similarity=0.200  Sum_probs=96.0

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh---hhcccchhhhhhcccc--CC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN---QVAEKSLRSSISGWIT--NL  114 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~---~~~~~t~~e~l~~~~~--~~  114 (454)
                      ..++.-++|+|+||||||||+++|+|.+++. .  +.|.+...     ..++++.|.   ....+|+.+++.....  ..
T Consensus       347 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~-~--G~i~~~~~-----~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~  418 (556)
T PRK11819        347 LPPGGIVGIIGPNGAGKSTLFKMITGQEQPD-S--GTIKIGET-----VKLAYVDQSRDALDPNKTVWEEISGGLDIIKV  418 (556)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-C--eEEEECCc-----eEEEEEeCchhhcCCCCCHHHHHHhhcccccc
Confidence            4566779999999999999999999998742 3  44544321     135555554   2345677777632211  11


Q ss_pred             CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh
Q 012882          115 PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS  186 (454)
Q Consensus       115 ~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~  186 (454)
                      .......+.++..+++...     .....+..+++++       ++++.+|+||+||||+ +||+..+..+.++|..+  
T Consensus       419 ~~~~~~~~~~l~~~~l~~~-----~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--  491 (556)
T PRK11819        419 GNREIPSRAYVGRFNFKGG-----DQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF--  491 (556)
T ss_pred             cccHHHHHHHHHhCCCChh-----HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--
Confidence            1122233455565555211     1122344566655       6888999999999999 89999999999999987  


Q ss_pred             CCcEEEEecCC
Q 012882          187 TGTVLVATSNR  197 (454)
Q Consensus       187 ~G~vlV~ThN~  197 (454)
                      .|.+|++|||.
T Consensus       492 ~~tvi~vtHd~  502 (556)
T PRK11819        492 PGCAVVISHDR  502 (556)
T ss_pred             CCeEEEEECCH
Confidence            36799999985

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.50  E-value=6.8e-14  Score=150.88  Aligned_cols=155  Identities=17%  Similarity=0.159  Sum_probs=98.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhhh-hcccchhhhhhccccCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKNQ-VAEKSLRSSISGWITNL  114 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~~~  114 (454)
                      .++++-++|+|+||||||||+++++|..++ ..|...+.....    ....++.+.+++|+. ....|+.+|+....  .
T Consensus       341 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~--~  417 (544)
T TIGR01842       341 LQAGEALAIIGPSGSGKSTLARLIVGIWPP-TSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFG--E  417 (544)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccC--C
Confidence            456778999999999999999999999874 244333322211    123456677777762 22347888874221  1


Q ss_pred             CCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882          115 PFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV  181 (454)
Q Consensus       115 ~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll  181 (454)
                      ..+.+...+.+...++....     +.+..+..-...+++++       ||++++|++|+||||+ ++|..++..+.+.+
T Consensus       418 ~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l  497 (544)
T TIGR01842       418 NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAI  497 (544)
T ss_pred             CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHH
Confidence            12333333333333332210     01111111233455554       7899999999999999 89999999999999


Q ss_pred             HHHHhCCc-EEEEecCC
Q 012882          182 SRLLSTGT-VLVATSNR  197 (454)
Q Consensus       182 ~~L~~~G~-vlV~ThN~  197 (454)
                      ..+..+|. +|++||+.
T Consensus       498 ~~~~~~~~tvi~ith~~  514 (544)
T TIGR01842       498 KALKARGITVVVITHRP  514 (544)
T ss_pred             HHHhhCCCEEEEEeCCH
Confidence            98875565 88888873

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.50  E-value=7.6e-14  Score=136.43  Aligned_cols=153  Identities=16%  Similarity=0.188  Sum_probs=90.3

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhhh-hcccchhhhhhccccCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKNQ-VAEKSLRSSISGWITNL  114 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~~~  114 (454)
                      ..+++-++|+|+||+|||||+++|+|.+++ ..+...+.....    ....+..+.++.+.. ....|+.+++....   
T Consensus        44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~---  119 (257)
T cd03288          44 IKPGQKVGICGRTGSGKSSLSLAFFRMVDI-FDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPEC---  119 (257)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHcccCC-CCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHhcCcCC---
Confidence            356788999999999999999999999874 344433332221    112344555555541 11235555442110   


Q ss_pred             CCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882          115 PFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV  181 (454)
Q Consensus       115 ~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll  181 (454)
                      ..........+...++....     +.+..+......+++++       +||+.+|++|+||||+ ++|+..+..+.+++
T Consensus       120 ~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l  199 (257)
T cd03288         120 KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVV  199 (257)
T ss_pred             CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence            01122222332222222110     01111111122344443       7889999999999999 89999999999999


Q ss_pred             HHHHhCCc-EEEEecCC
Q 012882          182 SRLLSTGT-VLVATSNR  197 (454)
Q Consensus       182 ~~L~~~G~-vlV~ThN~  197 (454)
                      ..+.+ |. +|++||+.
T Consensus       200 ~~~~~-~~tiii~sh~~  215 (257)
T cd03288         200 MTAFA-DRTVVTIAHRV  215 (257)
T ss_pred             HHhcC-CCEEEEEecCh
Confidence            98754 55 88889885

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.50  E-value=2.4e-14  Score=152.42  Aligned_cols=45  Identities=29%  Similarity=0.369  Sum_probs=40.6

Q ss_pred             hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 012882          152 HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSNRA  198 (454)
Q Consensus       152 rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~  198 (454)
                      ++|+.+|+||+||||| .||+.+..+|.+.|..+  .|++||+||+|.
T Consensus       166 ~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~gtviiVSHDR~  211 (530)
T COG0488         166 RALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PGTVIVVSHDRY  211 (530)
T ss_pred             HHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CCcEEEEeCCHH
Confidence            6888999999999999 79999999999988866  568999999984

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.50  E-value=6.8e-14  Score=132.14  Aligned_cols=138  Identities=12%  Similarity=0.168  Sum_probs=85.7

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HHHHHHHHHHhhhh-hcccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LKINEHMHRLWKNQ-VAEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~  112 (454)
                      ..++.-++|.|+||||||||+++|+|..++ ..  +.+.+++..      ......+.++.+.. ....|+.+++.... 
T Consensus        31 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-~~--G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~-  106 (207)
T cd03369          31 VKAGEKIGIVGRTGAGKSTLILALFRFLEA-EE--GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFD-  106 (207)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcccCC-CC--CeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhcccC-
Confidence            346777999999999999999999998864 23  444443321      12234455555541 11235666552110 


Q ss_pred             CCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHH
Q 012882          113 NLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRL  184 (454)
Q Consensus       113 ~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L  184 (454)
                        ........+.+.   +.          .-...+++++       ++++.+|++|+||||+ ++|+.....+.++|..+
T Consensus       107 --~~~~~~~~~~l~---~~----------~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~  171 (207)
T cd03369         107 --EYSDEEIYGALR---VS----------EGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREE  171 (207)
T ss_pred             --CCCHHHHHHHhh---cc----------CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence              111111111111   11          0111222222       6778999999999999 89999999999999998


Q ss_pred             HhCCc-EEEEecCC
Q 012882          185 LSTGT-VLVATSNR  197 (454)
Q Consensus       185 ~~~G~-vlV~ThN~  197 (454)
                      .+ |. +|++||+.
T Consensus       172 ~~-~~tiii~th~~  184 (207)
T cd03369         172 FT-NSTILTIAHRL  184 (207)
T ss_pred             cC-CCEEEEEeCCH
Confidence            54 66 88899874

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.50  E-value=2.8e-14  Score=154.11  Aligned_cols=143  Identities=18%  Similarity=0.208  Sum_probs=95.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh---hhcccchhhhhhcccc--CC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN---QVAEKSLRSSISGWIT--NL  114 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~---~~~~~t~~e~l~~~~~--~~  114 (454)
                      ...+.-++|+||||||||||+++|+|.+++. .  +.+.++.-     ..++++.|.   ....+|+.+++.....  ..
T Consensus       345 i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~-~--G~i~~~~~-----~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~  416 (552)
T TIGR03719       345 LPPGGIVGVIGPNGAGKSTLFRMITGQEQPD-S--GTIKIGET-----VKLAYVDQSRDALDPNKTVWEEISGGLDIIQL  416 (552)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHcCCCCCC-C--eEEEECCc-----eEEEEEeCCccccCCCCcHHHHHHhhcccccc
Confidence            3566779999999999999999999998642 3  34444321     135555554   2345677777633221  11


Q ss_pred             CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh
Q 012882          115 PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS  186 (454)
Q Consensus       115 ~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~  186 (454)
                      .......+.++..+++...     ........+++++       ++|+.+|+||+||||+ +||+..+..+.++|..+  
T Consensus       417 ~~~~~~~~~~l~~~~l~~~-----~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--  489 (552)
T TIGR03719       417 GKREVPSRAYVGRFNFKGS-----DQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF--  489 (552)
T ss_pred             CcchHHHHHHHHhCCCChh-----HhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC--
Confidence            1112233445555555211     1122344566655       6888999999999999 89999999999999988  


Q ss_pred             CCcEEEEecCC
Q 012882          187 TGTVLVATSNR  197 (454)
Q Consensus       187 ~G~vlV~ThN~  197 (454)
                      .|.||++|||.
T Consensus       490 ~~~viivsHd~  500 (552)
T TIGR03719       490 AGCAVVISHDR  500 (552)
T ss_pred             CCeEEEEeCCH
Confidence            35799999985

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.50  E-value=4.1e-14  Score=150.76  Aligned_cols=150  Identities=17%  Similarity=0.156  Sum_probs=92.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-------HHHHHHHHHHhhhh-----hcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-------LKINEHMHRLWKNQ-----VAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-------~~~~~~i~~~~~~~-----~~~~t~~e~l  107 (454)
                      ...++-++|+|+||||||||+++|+|..++ ..  +.+.+++.-       ......+.++++..     ....++.++.
T Consensus       271 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~--G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~  347 (491)
T PRK10982        271 LHKGEILGIAGLVGAKRTDIVETLFGIREK-SA--GTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNS  347 (491)
T ss_pred             EeCCcEEEEecCCCCCHHHHHHHHcCCCcC-Cc--cEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHhe
Confidence            355677999999999999999999999874 23  344443210       11122244454431     2334433321


Q ss_pred             -hccc----c--CCCCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CC
Q 012882          108 -SGWI----T--NLPFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TV  169 (454)
Q Consensus       108 -~~~~----~--~~~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~l  169 (454)
                       ....    .  .....   ...++.++..+++..     +........+++++       ++++.+|+||+||||+ ++
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gL  422 (491)
T PRK10982        348 LISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKT-----PGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGI  422 (491)
T ss_pred             ehhhhhhhcccccccCcHHHHHHHHHHHHhcCccC-----CCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCccc
Confidence             1110    0  10001   122344444444421     11223344555554       6888999999999999 89


Q ss_pred             CHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          170 DVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       170 D~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      |+..+..+.+++..+.++|. ||++||+.
T Consensus       423 D~~~~~~~~~~l~~l~~~~~tvi~vsHd~  451 (491)
T PRK10982        423 DVGAKFEIYQLIAELAKKDKGIIIISSEM  451 (491)
T ss_pred             ChhHHHHHHHHHHHHHHCCCEEEEECCCh
Confidence            99999999999999988777 99999985

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.50  E-value=5e-14  Score=136.99  Aligned_cols=150  Identities=13%  Similarity=0.173  Sum_probs=87.2

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCC--CCcccCceEEEechhH-----HHHHH--HHHHHhhh--hhcccchhhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGAT--EGIVKHRQRFHFHEAM-----LKINE--HMHRLWKN--QVAEKSLRSSIS  108 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l--~~~~~~k~rv~f~~f~-----~~~~~--~i~~~~~~--~~~~~t~~e~l~  108 (454)
                      ..++.-++|+|+||||||||+++|+|..  ++ ..|  .+.+.+..     .....  .+.++.+.  ..+..++.+++.
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~-~~G--~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~  106 (252)
T CHL00131         30 INKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI-LEG--DILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLR  106 (252)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHcCCCcCcC-CCc--eEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHH
Confidence            4567889999999999999999999973  32 233  44433211     00001  12222222  222334444442


Q ss_pred             ccccC------CC-CCh----HHHHHHHHHHhhhhHHhhcchHHHHHH-Hhhhhh-------hhhccCCcEEEeeCCC-C
Q 012882          109 GWITN------LP-FDS----KVMEWVAAEEKYKQEVQMKNILPAVAD-KFLVDQ-------HADQRGASILCFDEIQ-T  168 (454)
Q Consensus       109 ~~~~~------~~-~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~-~l~~~~-------rAL~~~p~lL~LDEp~-~  168 (454)
                      .....      .. ...    ..++.++..+++...     ....... .+++++       +||+.+|+||+||||+ +
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~  181 (252)
T CHL00131        107 LAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPS-----FLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSG  181 (252)
T ss_pred             HhhhhhhcccccccccHHHHHHHHHHHHHHcCCchh-----hhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence            11100      00 010    122344444444210     0011111 244443       6888999999999999 8


Q ss_pred             CCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          169 VDVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       169 lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      +|+.++..+.++|.++.++|. ||++||+.
T Consensus       182 LD~~~~~~l~~~l~~~~~~g~tii~~tH~~  211 (252)
T CHL00131        182 LDIDALKIIAEGINKLMTSENSIILITHYQ  211 (252)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence            999999999999999987776 88999974

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.50  E-value=7.2e-14  Score=148.78  Aligned_cols=152  Identities=16%  Similarity=0.174  Sum_probs=96.5

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-------HHHHHHHHHHHhhhhh--c--ccchhhhh
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-------MLKINEHMHRLWKNQV--A--EKSLRSSI  107 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-------~~~~~~~i~~~~~~~~--~--~~t~~e~l  107 (454)
                      ...++.-++|+||||||||||+++|+|..++...|  .+.+.+.       .......++++.+...  .  ..++.+++
T Consensus       282 ~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G--~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~  359 (490)
T PRK10938        282 QVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSN--DLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVI  359 (490)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCC--eEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHH
Confidence            34567789999999999999999999976521133  3433221       1123345666666521  1  12444444


Q ss_pred             hcccc---CC--CCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCH
Q 012882          108 SGWIT---NL--PFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDV  171 (454)
Q Consensus       108 ~~~~~---~~--~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~  171 (454)
                      .....   ..  ...   ...++.++..+++...     ........+++++       +||+.+|+||+||||+ ++|+
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~  434 (490)
T PRK10938        360 LSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR-----TADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDP  434 (490)
T ss_pred             HhccccccccccCCCHHHHHHHHHHHHHcCCchh-----hccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH
Confidence            22111   00  011   1344556666665320     1122344555554       6888999999999999 8999


Q ss_pred             HHHHHHHHHHHHHHhCC-c-EEEEecCC
Q 012882          172 FAIVALSGIVSRLLSTG-T-VLVATSNR  197 (454)
Q Consensus       172 ~~a~~L~~ll~~L~~~G-~-vlV~ThN~  197 (454)
                      ..+..+.++|.++.++| . ||++|||.
T Consensus       435 ~~~~~l~~~L~~l~~~~~~tviivsHd~  462 (490)
T PRK10938        435 LNRQLVRRFVDVLISEGETQLLFVSHHA  462 (490)
T ss_pred             HHHHHHHHHHHHHHhcCCcEEEEEecch
Confidence            99999999999998764 4 89999985

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.49  E-value=1e-13  Score=126.79  Aligned_cols=122  Identities=17%  Similarity=0.075  Sum_probs=76.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChH
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK  119 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~  119 (454)
                      ..+++-++|.|+||||||||+++++|.+++.   .+++.+...     ..+.++.++.              .  .+..+
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~-----~~i~~~~q~~--------------~--~~~~t   79 (166)
T cd03223          24 IKPGDRLLITGPSGTGKSSLFRALAGLWPWG---SGRIGMPEG-----EDLLFLPQRP--------------Y--LPLGT   79 (166)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCC-----ceEEEECCCC--------------c--ccccc
Confidence            3567889999999999999999999998742   344444321     2233333321              0  01123


Q ss_pred             HHHHHHHH--HhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecC
Q 012882          120 VMEWVAAE--EKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSN  196 (454)
Q Consensus       120 ~~e~ll~~--~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN  196 (454)
                      +.+++...  ..+.+   .......+|       +|++.+|++|+||||+ ++|+..+..+.+++.++  ...+|++||+
T Consensus        80 v~~nl~~~~~~~LS~---G~~~rv~la-------ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~  147 (166)
T cd03223          80 LREQLIYPWDDVLSG---GEQQRLAFA-------RLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHR  147 (166)
T ss_pred             HHHHhhccCCCCCCH---HHHHHHHHH-------HHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCC
Confidence            33333210  00100   001112223       4566999999999999 89999999999999887  2348999998


Q ss_pred             C
Q 012882          197 R  197 (454)
Q Consensus       197 ~  197 (454)
                      .
T Consensus       148 ~  148 (166)
T cd03223         148 P  148 (166)
T ss_pred             h
Confidence            4

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.49  E-value=7.1e-14  Score=154.93  Aligned_cols=155  Identities=16%  Similarity=0.147  Sum_probs=103.9

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITNL  114 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~  114 (454)
                      .++++-++|+|+||||||||+++|.|..++. .|...+...+.    ...+++.+.+++|+ ..-..|+.+|+.....  
T Consensus       488 i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~-~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~--  564 (694)
T TIGR03375       488 IRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT-EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAP--  564 (694)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCC--
Confidence            4567889999999999999999999998752 44333332221    13566778888877 3334688888843321  


Q ss_pred             CCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882          115 PFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV  181 (454)
Q Consensus       115 ~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll  181 (454)
                      ..+.+...+.+...++.+..     +.+..+..-...+++++       ||++++|++|+||||| ++|+.+...+.+.+
T Consensus       565 ~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l  644 (694)
T TIGR03375       565 YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRL  644 (694)
T ss_pred             CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence            23445555555555543311     11111111122345554       7899999999999999 89999999999999


Q ss_pred             HHHHhCCcEEEEecCC
Q 012882          182 SRLLSTGTVLVATSNR  197 (454)
Q Consensus       182 ~~L~~~G~vlV~ThN~  197 (454)
                      ..+.+..++|++||+.
T Consensus       645 ~~~~~~~T~iiItHrl  660 (694)
T TIGR03375       645 KRWLAGKTLVLVTHRT  660 (694)
T ss_pred             HHHhCCCEEEEEecCH
Confidence            9987644599999973

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.49  E-value=9e-14  Score=151.25  Aligned_cols=155  Identities=12%  Similarity=0.177  Sum_probs=103.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITNL  114 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~  114 (454)
                      .++++-++|+|+||||||||++++.|..+| ..|...+...+.    ...+++.+.+++|+ ..-..|+.+|+....  .
T Consensus       358 i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p-~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~--~  434 (588)
T PRK13657        358 AKPGQTVAIVGPTGAGKSTLINLLQRVFDP-QSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR--P  434 (588)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCC--C
Confidence            356778999999999999999999999875 244444332221    23567778888877 233458888884321  1


Q ss_pred             CCChHHHHHHHHHHhhhhHHh-----hcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882          115 PFDSKVMEWVAAEEKYKQEVQ-----MKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV  181 (454)
Q Consensus       115 ~~~~~~~e~ll~~~~l~~~~~-----~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll  181 (454)
                      ..+.+.....+...++.....     .+..+..-...+++++       |||+++|+||+||||+ ++|+.+...+.+.+
T Consensus       435 ~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l  514 (588)
T PRK13657        435 DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAAL  514 (588)
T ss_pred             CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence            123444555555555433211     1111111122355554       7999999999999999 89999999999999


Q ss_pred             HHHHhCCcEEEEecCC
Q 012882          182 SRLLSTGTVLVATSNR  197 (454)
Q Consensus       182 ~~L~~~G~vlV~ThN~  197 (454)
                      ..+....++|++||+.
T Consensus       515 ~~~~~~~tvIiitHr~  530 (588)
T PRK13657        515 DELMKGRTTFIIAHRL  530 (588)
T ss_pred             HHHhcCCEEEEEEecH
Confidence            8886544599999973

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.49  E-value=5.2e-13  Score=122.80  Aligned_cols=161  Identities=14%  Similarity=0.101  Sum_probs=116.6

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh--hhcccchhhhhhcccc
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN--QVAEKSLRSSISGWIT  112 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~  112 (454)
                      ..+.++-..|+||||+|||||+.+.+..++. ..|...+...+.    ..++.+.+..++|+  ....+|+++.+..+.+
T Consensus        23 ~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~-d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRf  101 (252)
T COG4604          23 DIPKGGITSIIGPNGAGKSTLLSMMSRLLKK-DSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRF  101 (252)
T ss_pred             eecCCceeEEECCCCccHHHHHHHHHHhccc-cCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCC
Confidence            3455666899999999999999999998874 244444444332    34677888888887  4556789888833333


Q ss_pred             CCC------CChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          113 NLP------FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       113 ~~~------~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                      +..      .+...++..++.+.+      .+.-.+..+++++++       ..++++.+.++||||. .||...+..+.
T Consensus       102 PYSqGRlt~eD~~~I~~aieyl~L------~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iM  175 (252)
T COG4604         102 PYSQGRLTKEDRRIINEAIEYLHL------EDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIM  175 (252)
T ss_pred             cccCCCCchHHHHHHHHHHHHhcc------cchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHH
Confidence            321      122334444444444      333456778888887       3667999999999999 89999999999


Q ss_pred             HHHHHHHhC-Cc-EEEEecCCCccchhcCC
Q 012882          179 GIVSRLLST-GT-VLVATSNRAPWDLNQDG  206 (454)
Q Consensus       179 ~ll~~L~~~-G~-vlV~ThN~~P~dLy~~~  206 (454)
                      ++++++.++ |+ ++++-|+...+..|.+.
T Consensus       176 k~Lrrla~el~KtiviVlHDINfAS~YsD~  205 (252)
T COG4604         176 KILRRLADELGKTIVVVLHDINFASCYSDH  205 (252)
T ss_pred             HHHHHHHHHhCCeEEEEEecccHHHhhhhh
Confidence            999999864 66 99999999888888765

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.49  E-value=1.9e-13  Score=125.40  Aligned_cols=143  Identities=16%  Similarity=0.170  Sum_probs=86.5

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS  118 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~  118 (454)
                      ...++.-+.++||+|||||||+++++|...|. .  +++..+.-.      +.       ....-+..+||...-++| .
T Consensus        27 ~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~-~--G~i~l~~r~------i~-------gPgaergvVFQ~~~LlPW-l   89 (259)
T COG4525          27 TIASGELVVVLGPSGCGKTTLLNLIAGFVTPS-R--GSIQLNGRR------IE-------GPGAERGVVFQNEALLPW-L   89 (259)
T ss_pred             eecCCCEEEEEcCCCccHHHHHHHHhcCcCcc-c--ceEEECCEe------cc-------CCCccceeEeccCccchh-h
Confidence            34567889999999999999999999988642 2  233221100      00       000011122332222222 2


Q ss_pred             HHHHHHHHHHhhhhHHhh---------------cchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          119 KVMEWVAAEEKYKQEVQM---------------KNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       119 ~~~e~ll~~~~l~~~~~~---------------~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      ++.+|+...+.+.+-.+.               .+.-....-++++++       |||+.+|++|+||||. .+|.-++.
T Consensus        90 ~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe  169 (259)
T COG4525          90 NVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTRE  169 (259)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHH
Confidence            344444444444321000               000011222334443       7999999999999999 69999999


Q ss_pred             HHHHHHHHHHhC-Cc-EEEEecCCC
Q 012882          176 ALSGIVSRLLST-GT-VLVATSNRA  198 (454)
Q Consensus       176 ~L~~ll~~L~~~-G~-vlV~ThN~~  198 (454)
                      .+..++-.+++. |. ++++||+..
T Consensus       170 ~mQelLldlw~~tgk~~lliTH~ie  194 (259)
T COG4525         170 QMQELLLDLWQETGKQVLLITHDIE  194 (259)
T ss_pred             HHHHHHHHHHHHhCCeEEEEeccHH
Confidence            999999999864 77 999999864

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.49  E-value=6.9e-14  Score=154.84  Aligned_cols=152  Identities=18%  Similarity=0.192  Sum_probs=103.0

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITN  113 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~  113 (454)
                      ..++++-++|+|+||||||||+++|.|..+|. .|...+...+.    ...+++.+++++|+ ..-..|+.+|+..... 
T Consensus       475 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~-~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-  552 (686)
T TIGR03797       475 QIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE-SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-  552 (686)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-
Confidence            34567889999999999999999999998752 44333332221    23567788888887 3345688888844321 


Q ss_pred             CCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882          114 LPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI  180 (454)
Q Consensus       114 ~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l  180 (454)
                        .+.+...+.+...++.+.-     +.+..+..-...+++++       |||+++|++|+||||| .+|..+...+.+.
T Consensus       553 --~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~  630 (686)
T TIGR03797       553 --LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSES  630 (686)
T ss_pred             --CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence              3455555556655554321     11111111223455554       7999999999999999 8999999999888


Q ss_pred             HHHHHhCCcEEEEecC
Q 012882          181 VSRLLSTGTVLVATSN  196 (454)
Q Consensus       181 l~~L~~~G~vlV~ThN  196 (454)
                      +..+  ..++|++||+
T Consensus       631 L~~~--~~T~IiItHr  644 (686)
T TIGR03797       631 LERL--KVTRIVIAHR  644 (686)
T ss_pred             HHHh--CCeEEEEecC
Confidence            8876  2358999987

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.48  E-value=1e-13  Score=150.37  Aligned_cols=154  Identities=16%  Similarity=0.129  Sum_probs=102.6

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh-hhcccchhhhhhccc
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN-QVAEKSLRSSISGWI  111 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~  111 (454)
                      ..++++-++|+|+||||||||+++|+|..++. .|  .+.+++.      ....++.+++++|+ ..-..|+.+|+....
T Consensus       362 ~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~-~G--~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~  438 (576)
T TIGR02204       362 TVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ-SG--RILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGR  438 (576)
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHHhccCCC-CC--EEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCC
Confidence            34567889999999999999999999998742 34  4444331      23456778888877 334568888884321


Q ss_pred             cCCCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          112 TNLPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       112 ~~~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                      .  ..+.+...+.+...++....     +.+..+..-...+++++       ||++++|++|+||||+ ++|..++..+.
T Consensus       439 ~--~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~  516 (576)
T TIGR02204       439 P--DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQ  516 (576)
T ss_pred             C--CCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHH
Confidence            1  12334455555554443211     11111111223355554       7999999999999999 89999999999


Q ss_pred             HHHHHHHhCCcEEEEecCC
Q 012882          179 GIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       179 ~ll~~L~~~G~vlV~ThN~  197 (454)
                      +.+..+.+..++|++||+.
T Consensus       517 ~~l~~~~~~~t~IiitH~~  535 (576)
T TIGR02204       517 QALETLMKGRTTLIIAHRL  535 (576)
T ss_pred             HHHHHHhCCCEEEEEecch
Confidence            9999886533499999974

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.48  E-value=4.3e-14  Score=150.42  Aligned_cols=142  Identities=15%  Similarity=0.192  Sum_probs=91.8

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhh---hcccchhhhhhccccCCC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQ---VAEKSLRSSISGWITNLP  115 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~---~~~~t~~e~l~~~~~~~~  115 (454)
                      ....+.-++|+||||+||||||++|.|.+.+. .  +.+.....     -.++|+.|+.   ....++.+.+....... 
T Consensus       344 ~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~-~--G~v~~g~~-----v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~-  414 (530)
T COG0488         344 RIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL-S--GTVKVGET-----VKIGYFDQHRDELDPDKTVLEELSEGFPDG-  414 (530)
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHhhhcccC-C--ceEEeCCc-----eEEEEEEehhhhcCccCcHHHHHHhhCccc-
Confidence            44567789999999999999999999987642 2  23322111     1122222221   12224444443222111 


Q ss_pred             CChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC
Q 012882          116 FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST  187 (454)
Q Consensus       116 ~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~  187 (454)
                       ....+..+++.+.+.+..     ....+..+++++       +.++.+|.||+||||| .||+.+...|.+.|..+  .
T Consensus       415 -~e~~~r~~L~~f~F~~~~-----~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~  486 (530)
T COG0488         415 -DEQEVRAYLGRFGFTGED-----QEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF--E  486 (530)
T ss_pred             -cHHHHHHHHHHcCCChHH-----HhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--C
Confidence             145666777777775422     123344555554       3556899999999999 69999999999888887  7


Q ss_pred             CcEEEEecCC
Q 012882          188 GTVLVATSNR  197 (454)
Q Consensus       188 G~vlV~ThN~  197 (454)
                      |+||++||||
T Consensus       487 Gtvl~VSHDr  496 (530)
T COG0488         487 GTVLLVSHDR  496 (530)
T ss_pred             CeEEEEeCCH
Confidence            8999999997

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.48  E-value=9.3e-14  Score=154.38  Aligned_cols=151  Identities=15%  Similarity=0.165  Sum_probs=100.9

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITNL  114 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~  114 (454)
                      .++++-++|+|++|||||||+++|.|..+|. .|...+...+.    ..++++.+++++|+ ..-..|+.+|+....  .
T Consensus       502 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~-~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~--~  578 (710)
T TIGR03796       502 LQPGQRVALVGGSGSGKSTIAKLVAGLYQPW-SGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWD--P  578 (710)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCC--C
Confidence            4567789999999999999999999998752 44443333222    23567788888887 334568888884321  1


Q ss_pred             CCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882          115 PFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV  181 (454)
Q Consensus       115 ~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll  181 (454)
                      ..+.+...+.+...++...-     +.+..+..-...+++++       |||+++|+||+||||| ++|..+...+.+.+
T Consensus       579 ~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l  658 (710)
T TIGR03796       579 TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNL  658 (710)
T ss_pred             CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHH
Confidence            23444455555555543311     11111222223455554       7999999999999999 89999999998888


Q ss_pred             HHHHhCCc-EEEEecC
Q 012882          182 SRLLSTGT-VLVATSN  196 (454)
Q Consensus       182 ~~L~~~G~-vlV~ThN  196 (454)
                      ..   .++ +|++||+
T Consensus       659 ~~---~~~T~IiitHr  671 (710)
T TIGR03796       659 RR---RGCTCIIVAHR  671 (710)
T ss_pred             Hh---cCCEEEEEecC
Confidence            75   355 8889987

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.48  E-value=9.6e-14  Score=150.53  Aligned_cols=155  Identities=15%  Similarity=0.098  Sum_probs=98.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhhh-hcccchhhhhhccccCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKNQ-VAEKSLRSSISGWITNL  114 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~~~  114 (454)
                      .++++-++|+||||||||||+++|.|..++. .|...+.....    ....++.+.+++|+. .-..|+.+|+.....  
T Consensus       338 i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~-~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~--  414 (569)
T PRK10789        338 LKPGQMLGICGPTGSGKSTLLSLIQRHFDVS-EGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRP--  414 (569)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcccCCC-CCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCC--
Confidence            3567779999999999999999999998752 44443332221    124556677777762 223478888743211  


Q ss_pred             CCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882          115 PFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV  181 (454)
Q Consensus       115 ~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll  181 (454)
                      ..+.+..+..+...++....     +.+..+..-...+++++       ||++++|++|+||||+ ++|+.+...+.+.+
T Consensus       415 ~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l  494 (569)
T PRK10789        415 DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNL  494 (569)
T ss_pred             CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHH
Confidence            12333444444433332110     00111111122344444       7889999999999999 89999999999999


Q ss_pred             HHHHhCCcEEEEecCC
Q 012882          182 SRLLSTGTVLVATSNR  197 (454)
Q Consensus       182 ~~L~~~G~vlV~ThN~  197 (454)
                      ..+.+..++|++||+.
T Consensus       495 ~~~~~~~tii~itH~~  510 (569)
T PRK10789        495 RQWGEGRTVIISAHRL  510 (569)
T ss_pred             HHHhCCCEEEEEecch
Confidence            8886433488999874

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.48  E-value=1.2e-13  Score=149.84  Aligned_cols=154  Identities=14%  Similarity=0.142  Sum_probs=104.0

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh-hhcccchhhhhhccc
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN-QVAEKSLRSSISGWI  111 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~  111 (454)
                      ..++++-++|+||||||||||+++|+|..++. .|  .+.+++.      ....++.+.+++|+ ..-..|+.+|+....
T Consensus       362 ~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~-~G--~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~  438 (574)
T PRK11160        362 QIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ-QG--EILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAA  438 (574)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-Cc--eEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCC
Confidence            34567889999999999999999999998742 34  4444331      23456777888777 233458888873322


Q ss_pred             cCCCCChHHHHHHHHHHhhhhHHh----hcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          112 TNLPFDSKVMEWVAAEEKYKQEVQ----MKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       112 ~~~~~~~~~~e~ll~~~~l~~~~~----~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                      .  ..+.+...+.+...++.....    .+..+..-...+++++       ||++++|++|+||||+ ++|..+...+.+
T Consensus       439 ~--~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~  516 (574)
T PRK11160        439 P--NASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILE  516 (574)
T ss_pred             C--ccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence            1  234455555666555543211    1111112223355554       7899999999999999 899999999999


Q ss_pred             HHHHHHhCCcEEEEecCC
Q 012882          180 IVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       180 ll~~L~~~G~vlV~ThN~  197 (454)
                      .+..+.+..++|++||+.
T Consensus       517 ~l~~~~~~~tviiitHr~  534 (574)
T PRK11160        517 LLAEHAQNKTVLMITHRL  534 (574)
T ss_pred             HHHHHcCCCEEEEEecCh
Confidence            999886533488999874

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.47  E-value=8.8e-14  Score=137.08  Aligned_cols=150  Identities=16%  Similarity=0.105  Sum_probs=92.0

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCC-Cc-ccCceEEEechhH-HHHHH-HHHHHhhhhhcccchhhhhhccccC-
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE-GI-VKHRQRFHFHEAM-LKINE-HMHRLWKNQVAEKSLRSSISGWITN-  113 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~-~~-~~~k~rv~f~~f~-~~~~~-~i~~~~~~~~~~~t~~e~l~~~~~~-  113 (454)
                      ....++-++|+|.+||||||+.++|.|.+| ++ ....+.+.|++.- ..+.. .+..++.+      -..++||.... 
T Consensus        27 ~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~------~I~mIfQ~p~~s  100 (316)
T COG0444          27 ELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGK------EIAMIFQDPMTS  100 (316)
T ss_pred             EEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCc------eEEEEEcCchhh
Confidence            345678899999999999999999999997 31 1223466665531 11111 11111111      11223443222 


Q ss_pred             CCCChHHHH-----------------------HHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEe
Q 012882          114 LPFDSKVME-----------------------WVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCF  163 (454)
Q Consensus       114 ~~~~~~~~e-----------------------~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~L  163 (454)
                      +..-.++.+                       ++++..++..   .+..+.....++++++       .||+.+|+|||.
T Consensus       101 LnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~---~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIA  177 (316)
T COG0444         101 LNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPD---PERRLKSYPHELSGGMRQRVMIAMALALNPKLLIA  177 (316)
T ss_pred             cCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCC---HHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEe
Confidence            111112222                       2222222211   1112233334556665       488999999999


Q ss_pred             eCCC-CCCHHHHHHHHHHHHHHHh-CCc-EEEEecCC
Q 012882          164 DEIQ-TVDVFAIVALSGIVSRLLS-TGT-VLVATSNR  197 (454)
Q Consensus       164 DEp~-~lD~~~a~~L~~ll~~L~~-~G~-vlV~ThN~  197 (454)
                      |||| .||+..+..+.++|++|.+ .|. +|++|||.
T Consensus       178 DEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl  214 (316)
T COG0444         178 DEPTTALDVTVQAQILDLLKELQREKGTALILITHDL  214 (316)
T ss_pred             CCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            9999 8999999999999999987 577 99999995

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.47  E-value=1.5e-13  Score=147.65  Aligned_cols=154  Identities=15%  Similarity=0.160  Sum_probs=103.9

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh-hhcccchhhhhhccc
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN-QVAEKSLRSSISGWI  111 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~  111 (454)
                      ..++++-++|+|++|||||||+++|.|..++. .  +.+.+++.      ..+.++.+++++|+ ..-..|+.+|+....
T Consensus       344 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~-~--G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~  420 (529)
T TIGR02857       344 TVPPGERVALVGPSGAGKSTLLNLLLGFVDPT-E--GSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLAR  420 (529)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-C--cEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccC
Confidence            34567779999999999999999999998752 3  44444332      23567778888887 233468888884322


Q ss_pred             cCCCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          112 TNLPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       112 ~~~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                      .  ..+.+...+.+...++.+..     +.+..+.+-...+++++       ||++++|++|+||||+ ++|+.+...+.
T Consensus       421 ~--~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~  498 (529)
T TIGR02857       421 P--DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVT  498 (529)
T ss_pred             C--CCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHH
Confidence            1  12334444555554443311     11112222233455554       7999999999999999 89999999999


Q ss_pred             HHHHHHHhCCcEEEEecCC
Q 012882          179 GIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       179 ~ll~~L~~~G~vlV~ThN~  197 (454)
                      +.+..+.+..++|++||+.
T Consensus       499 ~~l~~~~~~~t~i~itH~~  517 (529)
T TIGR02857       499 EALRALAQGRTVLLVTHRL  517 (529)
T ss_pred             HHHHHhcCCCEEEEEecCH
Confidence            9999886433499999974

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.47  E-value=1.2e-13  Score=155.42  Aligned_cols=160  Identities=19%  Similarity=0.180  Sum_probs=108.9

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCC-CCcccCceEEEechhH-HHHHHHHHHHhhh--hhcccchhhhh--hccccCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGAT-EGIVKHRQRFHFHEAM-LKINEHMHRLWKN--QVAEKSLRSSI--SGWITNL  114 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l-~~~~~~k~rv~f~~f~-~~~~~~i~~~~~~--~~~~~t~~e~l--~~~~~~~  114 (454)
                      .|+.=..|+|++|+|||||||+|+|.. .|.+.|..+|...... ....+..+++.|.  +.+..||+|.+  .++++..
T Consensus       815 kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp  894 (1391)
T KOG0065|consen  815 KPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLP  894 (1391)
T ss_pred             cCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCC
Confidence            345557899999999999999999974 4445666666554443 3455677888776  56888999988  3333322


Q ss_pred             C-CC-h---HHHHHHHHHHhhhhHHhhcchHHH-HHHHhhhhh-------hhhccCC-cEEEeeCCC-CCCHHHHHHHHH
Q 012882          115 P-FD-S---KVMEWVAAEEKYKQEVQMKNILPA-VADKFLVDQ-------HADQRGA-SILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       115 ~-~~-~---~~~e~ll~~~~l~~~~~~~~~l~~-va~~l~~~~-------rAL~~~p-~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                      . .+ .   +-+|++++.+++...   .+.+-. ..+.|+.++       ..|+.+| .||+||||| |||..+|..+.+
T Consensus       895 ~~v~~~ek~~yVe~Vi~lleL~~~---~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~  971 (1391)
T KOG0065|consen  895 KEVSDEEKYEYVEEVIELLELKEY---ADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMR  971 (1391)
T ss_pred             CcCCHHHHHHHHHHHHHHhCchhh---hhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHH
Confidence            1 11 1   345666666665321   111000 001133333       3788999 899999999 999999999999


Q ss_pred             HHHHHHhCCcEEEEecCCCccchh
Q 012882          180 IVSRLLSTGTVLVATSNRAPWDLN  203 (454)
Q Consensus       180 ll~~L~~~G~vlV~ThN~~P~dLy  203 (454)
                      +++.+.+.|..|++|-+.|..++.
T Consensus       972 ~lrkla~tGqtIlCTIHQPS~~if  995 (1391)
T KOG0065|consen  972 FLRKLADTGQTILCTIHQPSIDIF  995 (1391)
T ss_pred             HHHHHHhcCCeEEEEecCCcHHHH
Confidence            999999999988888777655543

>PRK13409 putative ATPase RIL; Provisional

Probab=99.47  E-value=7.9e-14  Score=151.28  Aligned_cols=144  Identities=18%  Similarity=0.192  Sum_probs=85.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEE-----------echhH-HHHHHHH-------HHHhhh--hh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFH-----------FHEAM-LKINEHM-------HRLWKN--QV   98 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~-----------f~~f~-~~~~~~i-------~~~~~~--~~   98 (454)
                      +.+++-++|+||||+|||||+++|+|.++|. .  +.+.           |.+.- ......+       .+..+.  ..
T Consensus        96 i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~-~--G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~  172 (590)
T PRK13409         96 PKEGKVTGILGPNGIGKTTAVKILSGELIPN-L--GDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLI  172 (590)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccCC-C--ccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhh
Confidence            4566779999999999999999999998753 3  3332           21110 0000000       000010  00


Q ss_pred             c---ccchhhhhhccccCCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-
Q 012882           99 A---EKSLRSSISGWITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-  167 (454)
Q Consensus        99 ~---~~t~~e~l~~~~~~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-  167 (454)
                      +   ..++.+++..     ......+++++..+++..      ........|++++       ++|+.+|+||+||||+ 
T Consensus       173 p~~~~~tv~e~l~~-----~~~~~~~~~~l~~l~l~~------~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts  241 (590)
T PRK13409        173 PKVFKGKVRELLKK-----VDERGKLDEVVERLGLEN------ILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTS  241 (590)
T ss_pred             hhhhcchHHHHHHh-----hhHHHHHHHHHHHcCCch------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence            0   0022222210     001123334444444421      1222334455554       5888999999999999 


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCc-EEEEecCCC
Q 012882          168 TVDVFAIVALSGIVSRLLSTGT-VLVATSNRA  198 (454)
Q Consensus       168 ~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~  198 (454)
                      +||+..+..+.++|.++.+ |. ||++||+..
T Consensus       242 ~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~  272 (590)
T PRK13409        242 YLDIRQRLNVARLIRELAE-GKYVLVVEHDLA  272 (590)
T ss_pred             CCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence            8999999999999999988 77 999999864

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.47  E-value=1.3e-13  Score=153.27  Aligned_cols=154  Identities=12%  Similarity=0.095  Sum_probs=101.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITNL  114 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~  114 (454)
                      .++++-++|+|++|||||||+++|.|..+| ..|...+...+.    ...+++.+++++|+ ..-..|+.+|+..+... 
T Consensus       497 i~~G~~vaIvG~SGsGKSTLlklL~gl~~p-~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~-  574 (708)
T TIGR01193       497 IKMNSKTTIVGMSGSGKSTLAKLLVGFFQA-RSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKE-  574 (708)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhccCCC-CCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCC-
Confidence            456788999999999999999999999875 244444433222    13566778888887 33345888888543111 


Q ss_pred             CCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882          115 PFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV  181 (454)
Q Consensus       115 ~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll  181 (454)
                      ..+.+...+.+...++.+.-     +.+..+..-...+++++       ||++++|++|+||||| ++|..+...+.+.+
T Consensus       575 ~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L  654 (708)
T TIGR01193       575 NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNL  654 (708)
T ss_pred             CCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHH
Confidence            23344444555544443211     11111122223345554       7999999999999999 89999999999988


Q ss_pred             HHHHhCCc-EEEEecCC
Q 012882          182 SRLLSTGT-VLVATSNR  197 (454)
Q Consensus       182 ~~L~~~G~-vlV~ThN~  197 (454)
                      ..+  +|+ +|++||+.
T Consensus       655 ~~~--~~~T~IiitHr~  669 (708)
T TIGR01193       655 LNL--QDKTIIFVAHRL  669 (708)
T ss_pred             HHh--cCCEEEEEecch
Confidence            875  355 88999873

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.47  E-value=2.9e-13  Score=122.71  Aligned_cols=150  Identities=14%  Similarity=0.148  Sum_probs=101.6

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEech-----------------hHHHHHHHHHHHhhh--hhccc
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE-----------------AMLKINEHMHRLWKN--QVAEK  101 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~-----------------f~~~~~~~i~~~~~~--~~~~~  101 (454)
                      ..+.-+-|+|.+||||||+++||.-.-.| ..+..+++..+                 ....++.+++.+.|.  +...+
T Consensus        30 ~~GdVisIIGsSGSGKSTfLRCiN~LE~P-~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHm  108 (256)
T COG4598          30 NAGDVISIIGSSGSGKSTFLRCINFLEKP-SAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHM  108 (256)
T ss_pred             CCCCEEEEecCCCCchhHHHHHHHhhcCC-CCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHH
Confidence            35566999999999999999999653322 34444443321                 234556667777665  45567


Q ss_pred             chhhhhhccccC---CCCCh--HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-C
Q 012882          102 SLRSSISGWITN---LPFDS--KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-T  168 (454)
Q Consensus       102 t~~e~l~~~~~~---~~~~~--~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~  168 (454)
                      |+.+|+.-.+-.   .+..+  +.++.++...++..+..      .....+++++       |||+.+|++++||||| .
T Consensus       109 tvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~------~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSA  182 (256)
T COG4598         109 TVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKAD------AYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSA  182 (256)
T ss_pred             HHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhh------cCccccCchHHHHHHHHHHHhcCCceEeecCCccc
Confidence            777776443222   22222  45556666666644322      1112234333       6888999999999999 7


Q ss_pred             CCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          169 VDVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       169 lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      ||+.-...+.+++..|.+.|. .+++||.+
T Consensus       183 LDPElVgEVLkv~~~LAeEgrTMv~VTHEM  212 (256)
T COG4598         183 LDPELVGEVLKVMQDLAEEGRTMVVVTHEM  212 (256)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence            999999999999999999998 89999976

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.47  E-value=5.9e-14  Score=150.89  Aligned_cols=144  Identities=15%  Similarity=0.134  Sum_probs=85.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh--hhcccchhhhhhccc------
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN--QVAEKSLRSSISGWI------  111 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~------  111 (454)
                      ..++.-++|+|||||||||||++|+|.+++. .|  .+.+...     ..++++.|.  .....|+.+++....      
T Consensus        24 i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~-~G--~i~~~~~-----~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~   95 (530)
T PRK15064         24 FGGGNRYGLIGANGCGKSTFMKILGGDLEPS-AG--NVSLDPN-----ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEV   95 (530)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-Cc--eEEecCC-----CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHH
Confidence            3467789999999999999999999998642 33  3332210     112222221  112223333321000      


Q ss_pred             -------cC----------------------CCCC-hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhh
Q 012882          112 -------TN----------------------LPFD-SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HAD  154 (454)
Q Consensus       112 -------~~----------------------~~~~-~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL  154 (454)
                             ..                      ..+. ...++.++..+++....     .......+++++       ++|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----~~~~~~~LSgGq~qrv~lA~aL  170 (530)
T PRK15064         96 KQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQ-----HYGLMSEVAPGWKLRVLLAQAL  170 (530)
T ss_pred             HHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhH-----hcCchhhcCHHHHHHHHHHHHH
Confidence                   00                      0000 12334444444442110     011234566665       688


Q ss_pred             ccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCCCc
Q 012882          155 QRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNRAP  199 (454)
Q Consensus       155 ~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~P  199 (454)
                      +.+|+||+||||+ +||+..+..+.++|..   .|. ||++||+...
T Consensus       171 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~~  214 (530)
T PRK15064        171 FSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRHF  214 (530)
T ss_pred             hcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHHH
Confidence            8999999999999 8999999999998864   455 9999998643

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.47  E-value=1.6e-13  Score=149.16  Aligned_cols=156  Identities=13%  Similarity=0.167  Sum_probs=98.0

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITN  113 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~  113 (454)
                      ..++++-++|+||||||||||++++.|..++ ..|...+.....    ....++.+++++|+ .....|+.+|+......
T Consensus       357 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~  435 (585)
T TIGR01192       357 EAKAGQTVAIVGPTGAGKTTLINLLQRVYDP-TVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREG  435 (585)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHccCCCC-CCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCC
Confidence            3456788999999999999999999999875 244333322211    12455667777776 22345788887432211


Q ss_pred             CCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882          114 LPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI  180 (454)
Q Consensus       114 ~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l  180 (454)
                        .+.+...+.+...++....     +.+..+..-...+++++       |||+++|++|+||||+ ++|..+...+.+.
T Consensus       436 --~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~  513 (585)
T TIGR01192       436 --ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNA  513 (585)
T ss_pred             --CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHH
Confidence              1233333333332222110     01111111122345554       7899999999999999 8999999999999


Q ss_pred             HHHHHhCCcEEEEecCC
Q 012882          181 VSRLLSTGTVLVATSNR  197 (454)
Q Consensus       181 l~~L~~~G~vlV~ThN~  197 (454)
                      +..+.+..++|++||+.
T Consensus       514 l~~~~~~~tvI~isH~~  530 (585)
T TIGR01192       514 IDALRKNRTTFIIAHRL  530 (585)
T ss_pred             HHHHhCCCEEEEEEcCh
Confidence            99886533489999874

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PLN03073 ABC transporter F family; Provisional

Probab=99.47  E-value=3.6e-14  Score=156.84  Aligned_cols=143  Identities=15%  Similarity=0.087  Sum_probs=87.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhh--hccccCCCCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSI--SGWITNLPFD  117 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l--~~~~~~~~~~  117 (454)
                      ...+.-++|+||||||||||+++|+|.+++. .|  .+.++.     ...++++.|.....+++.++.  ..........
T Consensus       532 i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~-~G--~I~~~~-----~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~  603 (718)
T PLN03073        532 IDLDSRIAMVGPNGIGKSTILKLISGELQPS-SG--TVFRSA-----KVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVP  603 (718)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-Cc--eEEECC-----ceeEEEEeccccccCCcchhHHHHHHHhcCCCC
Confidence            3456779999999999999999999998742 33  333321     112344444322222222221  1000000122


Q ss_pred             hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc
Q 012882          118 SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT  189 (454)
Q Consensus       118 ~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~  189 (454)
                      ...++.++..+++...     ........+++++       ++++.+|++|+||||+ +||+.+...+.+.+..+  .|+
T Consensus       604 ~~~i~~~L~~~gl~~~-----~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~gt  676 (718)
T PLN03073        604 EQKLRAHLGSFGVTGN-----LALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGG  676 (718)
T ss_pred             HHHHHHHHHHCCCChH-----HhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCE
Confidence            3455666666666321     0111233455554       6788999999999999 89999999888777665  467


Q ss_pred             EEEEecCC
Q 012882          190 VLVATSNR  197 (454)
Q Consensus       190 vlV~ThN~  197 (454)
                      ||++||+.
T Consensus       677 vIivSHd~  684 (718)
T PLN03073        677 VLMVSHDE  684 (718)
T ss_pred             EEEEECCH
Confidence            99999985

>PLN03140 ABC transporter G family member; Provisional

Probab=99.46  E-value=1.1e-13  Score=162.84  Aligned_cols=153  Identities=19%  Similarity=0.172  Sum_probs=101.0

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCC-cccCceEEEechhH---HHHHHHHHHHhhh--hhcccchhhhh-hccccC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEG-IVKHRQRFHFHEAM---LKINEHMHRLWKN--QVAEKSLRSSI-SGWITN  113 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~-~~~~k~rv~f~~f~---~~~~~~i~~~~~~--~~~~~t~~e~l-~~~~~~  113 (454)
                      .+++-++|+|||||||||||++|+|..++ ...|  .+.+++..   ....+.++++.|.  ..+.+|+.|++ +.....
T Consensus       904 ~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G--~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr  981 (1470)
T PLN03140        904 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG--DIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLR  981 (1470)
T ss_pred             ECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccc--eEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhC
Confidence            45677999999999999999999998642 2233  34443321   1223445677665  45678999987 322111


Q ss_pred             CCC--Ch----HHHHHHHHHHhhhhHHhhcchHH-HHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          114 LPF--DS----KVMEWVAAEEKYKQEVQMKNILP-AVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       114 ~~~--~~----~~~e~ll~~~~l~~~~~~~~~l~-~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                      .+.  +.    ..+++++..+++....+.  .+. ...+.+++++       ++|+.+|+||+||||+ +||..++..+.
T Consensus       982 ~~~~~~~~~~~~~v~~vl~~lgL~~~~~~--~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~ 1059 (1470)
T PLN03140        982 LPKEVSKEEKMMFVDEVMELVELDNLKDA--IVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1059 (1470)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCChhHhCC--ccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Confidence            111  11    235666776666432110  000 0013455554       6888999999999999 89999999999


Q ss_pred             HHHHHHHhCCc-EEEEecCC
Q 012882          179 GIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       179 ~ll~~L~~~G~-vlV~ThN~  197 (454)
                      ++|+.+.+.|. ||++||+.
T Consensus      1060 ~~L~~l~~~g~tVI~t~Hq~ 1079 (1470)
T PLN03140       1060 RTVRNTVDTGRTVVCTIHQP 1079 (1470)
T ss_pred             HHHHHHHHCCCEEEEEeCCC
Confidence            99999998887 78888774

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.46  E-value=2.6e-13  Score=122.63  Aligned_cols=110  Identities=19%  Similarity=0.187  Sum_probs=73.8

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HHHHHHHHHHhhhhhcccchhhhhhccccCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LKINEHMHRLWKNQVAEKSLRSSISGWITNL  114 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~  114 (454)
                      .+++-++|+|+||+|||||+++|+|.+++   ..+++.++...      ......+.++              ++     
T Consensus        23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~---~~G~i~~~~~~~~~~~~~~~~~~i~~~--------------~q-----   80 (157)
T cd00267          23 KAGEIVALVGPNGSGKSTLLRAIAGLLKP---TSGEILIDGKDIAKLPLEELRRRIGYV--------------PQ-----   80 (157)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEcccCCHHHHHhceEEE--------------ee-----
Confidence            45678999999999999999999999874   24455554321      0111111111              11     


Q ss_pred             CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEE
Q 012882          115 PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLV  192 (454)
Q Consensus       115 ~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV  192 (454)
                                     +.+   .......+++       +++.+|+++|||||+ ++|..++..+.+++..+.+.|. +++
T Consensus        81 ---------------lS~---G~~~r~~l~~-------~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~  135 (157)
T cd00267          81 ---------------LSG---GQRQRVALAR-------ALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVII  135 (157)
T ss_pred             ---------------CCH---HHHHHHHHHH-------HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence                           000   0001122343       445889999999999 8999999999999999877666 888


Q ss_pred             EecCC
Q 012882          193 ATSNR  197 (454)
Q Consensus       193 ~ThN~  197 (454)
                      +||+.
T Consensus       136 ~sh~~  140 (157)
T cd00267         136 VTHDP  140 (157)
T ss_pred             EeCCH
Confidence            88874

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.46  E-value=7e-14  Score=151.15  Aligned_cols=142  Identities=18%  Similarity=0.195  Sum_probs=88.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh--hhcccchhhhhhcccc-----
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN--QVAEKSLRSSISGWIT-----  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~-----  112 (454)
                      ..++.-++|+||||||||||+++|+|.+++ ..|  .+.++.     ...+++++|.  ..+.+|+.+++.....     
T Consensus        30 i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p-~~G--~i~~~~-----~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~  101 (556)
T PRK11819         30 FFPGAKIGVLGLNGAGKSTLLRIMAGVDKE-FEG--EARPAP-----GIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAA  101 (556)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCc--eEEecC-----CCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHH
Confidence            456778999999999999999999999864 233  333321     1123444443  2233455555421100     


Q ss_pred             -----------CCC-----------------------CC-hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh------
Q 012882          113 -----------NLP-----------------------FD-SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ------  151 (454)
Q Consensus       113 -----------~~~-----------------------~~-~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~------  151 (454)
                                 ...                       +. ...++.++..+++.      . .......+++++      
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~------~-~~~~~~~LSgGqkqrv~l  174 (556)
T PRK11819        102 LDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP------P-WDAKVTKLSGGERRRVAL  174 (556)
T ss_pred             HHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC------c-ccCchhhcCHHHHHHHHH
Confidence                       000                       00 11222333333331      0 122334556665      


Q ss_pred             -hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 012882          152 -HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSNRA  198 (454)
Q Consensus       152 -rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~  198 (454)
                       ++|+.+|++|+||||+ +||+.....+.++|..+  .++||++||+..
T Consensus       175 a~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~--~~tviiisHd~~  221 (556)
T PRK11819        175 CRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY--PGTVVAVTHDRY  221 (556)
T ss_pred             HHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC--CCeEEEEeCCHH
Confidence             6889999999999999 89999999999999887  357999999964

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.46  E-value=9.9e-14  Score=163.35  Aligned_cols=156  Identities=14%  Similarity=0.142  Sum_probs=101.0

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEech--hHHHHHHHHHHHhhh--hhcccchhhhh-hccccCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE--AMLKINEHMHRLWKN--QVAEKSLRSSI-SGWITNL  114 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~--f~~~~~~~i~~~~~~--~~~~~t~~e~l-~~~~~~~  114 (454)
                      ..+++-++|+|||||||||||++|+|..++.....+.+.+++  .....++.++++.|+  ....+|+.|++ +......
T Consensus       786 i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~  865 (1394)
T TIGR00956       786 VKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQ  865 (1394)
T ss_pred             EECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHHHHHhCC
Confidence            345677999999999999999999998752111223444432  222345567777775  45678999988 3221111


Q ss_pred             C--CCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCc-EEEeeCCC-CCCHHHHHHHHH
Q 012882          115 P--FDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGAS-ILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       115 ~--~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~-lL~LDEp~-~lD~~~a~~L~~  179 (454)
                      +  .+.    ..+++++..+++....+  ..+......+++++       ++|+.+|+ ||+||||+ +||..++..+.+
T Consensus       866 ~~~~~~~~~~~~v~~~l~~l~L~~~~d--~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~  943 (1394)
T TIGR00956       866 PKSVSKSEKMEYVEEVIKLLEMESYAD--AVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICK  943 (1394)
T ss_pred             CCCCCHHHHHHHHHHHHHHcCChhhCC--CeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHH
Confidence            1  111    33456666666533111  00000001344443       57889997 99999999 899999999999


Q ss_pred             HHHHHHhCCc-EEEEecCC
Q 012882          180 IVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       180 ll~~L~~~G~-vlV~ThN~  197 (454)
                      +|+++.++|. ||++||+.
T Consensus       944 ~L~~la~~g~tvI~t~H~~  962 (1394)
T TIGR00956       944 LMRKLADHGQAILCTIHQP  962 (1394)
T ss_pred             HHHHHHHcCCEEEEEecCC
Confidence            9999988887 77777764

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.46  E-value=2.3e-13  Score=134.92  Aligned_cols=145  Identities=18%  Similarity=0.203  Sum_probs=82.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhh-hcccchhhhhhccccCCCCCh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQ-VAEKSLRSSISGWITNLPFDS  118 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~~~~~~~  118 (454)
                      ..+++-++|+|+||||||||+++|+|.+++. .|  .+.++.       .+.++.|.. ....++.+++.....   ...
T Consensus        60 i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~-~G--~I~i~g-------~i~yv~q~~~l~~~tv~enl~~~~~---~~~  126 (282)
T cd03291          60 IEKGEMLAITGSTGSGKTSLLMLILGELEPS-EG--KIKHSG-------RISFSSQFSWIMPGTIKENIIFGVS---YDE  126 (282)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-Cc--EEEECC-------EEEEEeCcccccccCHHHHhhcccc---cCH
Confidence            4567779999999999999999999998742 33  333332       133333331 111255555532111   111


Q ss_pred             HHHHHHHHHHhhhhHHhh-cc----hHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH-HHHH
Q 012882          119 KVMEWVAAEEKYKQEVQM-KN----ILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI-VSRL  184 (454)
Q Consensus       119 ~~~e~ll~~~~l~~~~~~-~~----~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l-l~~L  184 (454)
                      ......+...++...... ..    .+......+++++       ++|+.+|++|+||||+ ++|+..+..+.++ +..+
T Consensus       127 ~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~  206 (282)
T cd03291         127 YRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKL  206 (282)
T ss_pred             HHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHh
Confidence            111222222222111000 00    0000112344443       6888999999999999 8999999988875 4566


Q ss_pred             HhCCcEEEEecCC
Q 012882          185 LSTGTVLVATSNR  197 (454)
Q Consensus       185 ~~~G~vlV~ThN~  197 (454)
                      .+...||++||+.
T Consensus       207 ~~~~tIiiisH~~  219 (282)
T cd03291         207 MANKTRILVTSKM  219 (282)
T ss_pred             hCCCEEEEEeCCh
Confidence            4433488999985

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.45  E-value=1.1e-13  Score=151.67  Aligned_cols=152  Identities=14%  Similarity=0.107  Sum_probs=86.0

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEech--------hHHHHHHHHHHHhhhh--hcccchh-----
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE--------AMLKINEHMHRLWKNQ--VAEKSLR-----  104 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~--------f~~~~~~~i~~~~~~~--~~~~t~~-----  104 (454)
                      ..++.-++|+|||||||||||++|+|.+++. .|...+..+.        ........+.++.+..  ...++..     
T Consensus        24 i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd-~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~  102 (638)
T PRK10636         24 INPGQKVGLVGKNGCGKSTLLALLKNEISAD-GGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQLEAQLHDAN  102 (638)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHh
Confidence            4567789999999999999999999987642 3322221110        0000001112221110  0000000     


Q ss_pred             -----hh---hhccccCC--CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC
Q 012882          105 -----SS---ISGWITNL--PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ  167 (454)
Q Consensus       105 -----e~---l~~~~~~~--~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~  167 (454)
                           ..   +.......  ......++.++..+++..     .........+++++       ++|+.+|+||+||||+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~-----~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPt  177 (638)
T PRK10636        103 ERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSN-----EQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPT  177 (638)
T ss_pred             ccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCc-----hhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCC
Confidence                 00   00000000  011234555666665521     11122344556554       6888999999999999


Q ss_pred             -CCCHHHHHHHHHHHHHHHhCCcEEEEecCCCc
Q 012882          168 -TVDVFAIVALSGIVSRLLSTGTVLVATSNRAP  199 (454)
Q Consensus       168 -~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P  199 (454)
                       +||+.+...|.++|..+  .+.||++||++..
T Consensus       178 n~LD~~~~~~L~~~L~~~--~~tviivsHd~~~  208 (638)
T PRK10636        178 NHLDLDAVIWLEKWLKSY--QGTLILISHDRDF  208 (638)
T ss_pred             CcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHH
Confidence             89999999999998876  3569999999754

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.44  E-value=1.4e-13  Score=127.08  Aligned_cols=46  Identities=17%  Similarity=0.234  Sum_probs=41.4

Q ss_pred             hhhccC--CcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          152 HADQRG--ASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       152 rAL~~~--p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      ++++.+  |++|+||||+ ++|+..+..+.+++.++.+.|. ||++||+.
T Consensus       100 ral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~  149 (176)
T cd03238         100 SELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNL  149 (176)
T ss_pred             HHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            466789  9999999999 8999999999999999987777 89999984

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.44  E-value=2.5e-13  Score=149.52  Aligned_cols=166  Identities=13%  Similarity=0.119  Sum_probs=103.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhh-hcccchhhhhhccccC-----
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQ-VAEKSLRSSISGWITN-----  113 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~~-----  113 (454)
                      .++++-++|+||||||||||+++|+|..++. .  +.+....     +..+.+++|+. ....|+.+++......     
T Consensus       475 i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~-~--G~i~~~~-----~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~  546 (659)
T TIGR00954       475 VPSGNHLLICGPNGCGKSSLFRILGELWPVY-G--GRLTKPA-----KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKR  546 (659)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-C--CeEeecC-----CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhc
Confidence            4567779999999999999999999988742 2  3443321     23456666652 2223777777322110     


Q ss_pred             CCCChHHHHHHHHHHhhhhHHhhc---chHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882          114 LPFDSKVMEWVAAEEKYKQEVQMK---NILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS  182 (454)
Q Consensus       114 ~~~~~~~~e~ll~~~~l~~~~~~~---~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~  182 (454)
                      ........++++...++.......   +........+++++       ||++++|++|+||||+ ++|+.....+.+++.
T Consensus       547 ~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~  626 (659)
T TIGR00954       547 RGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCR  626 (659)
T ss_pred             cCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence            112234455666666554321100   00011123455554       7899999999999999 899999999988877


Q ss_pred             HHHhCCc-EEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCchhhh
Q 012882          183 RLLSTGT-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYR  235 (454)
Q Consensus       183 ~L~~~G~-vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~DyR  235 (454)
                      +.   |. +|++||+.                   +.++...+++.+++...|+
T Consensus       627 ~~---~~tvI~isH~~-------------------~~~~~~d~il~l~~~g~~~  658 (659)
T TIGR00954       627 EF---GITLFSVSHRK-------------------SLWKYHEYLLYMDGRGGYQ  658 (659)
T ss_pred             Hc---CCEEEEEeCch-------------------HHHHhCCEEEEEeCCCCcc
Confidence            63   65 88999874                   2344455666676654443

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.44  E-value=2.7e-13  Score=150.25  Aligned_cols=155  Identities=14%  Similarity=0.060  Sum_probs=101.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITNL  114 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~  114 (454)
                      .++++-++|+|+||||||||+++|+|..++. .|...+...+.    ..++++.+.+++|+ ..-..|+.+|+.....  
T Consensus       480 i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~-~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~--  556 (694)
T TIGR01846       480 IKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ-HGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP--  556 (694)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCC--
Confidence            4567789999999999999999999998742 44443332221    23456777777776 2334588888743211  


Q ss_pred             CCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882          115 PFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV  181 (454)
Q Consensus       115 ~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll  181 (454)
                      ..+.....+.+...++....     +.+..+..-...+++++       |||+++|++|+||||+ ++|..+...+.+.+
T Consensus       557 ~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l  636 (694)
T TIGR01846       557 GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNM  636 (694)
T ss_pred             CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHH
Confidence            12334444444444443210     11111112223455554       7899999999999999 89999999999999


Q ss_pred             HHHHhCCcEEEEecCC
Q 012882          182 SRLLSTGTVLVATSNR  197 (454)
Q Consensus       182 ~~L~~~G~vlV~ThN~  197 (454)
                      ..+....++|++||+.
T Consensus       637 ~~~~~~~t~i~itH~~  652 (694)
T TIGR01846       637 REICRGRTVIIIAHRL  652 (694)
T ss_pred             HHHhCCCEEEEEeCCh
Confidence            9885433489999874

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.44  E-value=2.5e-13  Score=150.92  Aligned_cols=152  Identities=14%  Similarity=0.080  Sum_probs=99.4

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITN  113 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~  113 (454)
                      ..++++-++|+||||||||||+++|.|..++. .|...+...+.    ..++++.+++++|+ ..-..|+++|+..... 
T Consensus       503 ~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~-~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~-  580 (711)
T TIGR00958       503 TLHPGEVVALVGPSGSGKSTVAALLQNLYQPT-GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT-  580 (711)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhccCCC-CCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCC-
Confidence            34567889999999999999999999999752 44444433222    24567788888887 3345688888843321 


Q ss_pred             CCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882          114 LPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI  180 (454)
Q Consensus       114 ~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l  180 (454)
                       ..+++...+.+...++....     +.+..+..-...+++++       ||++++|+||+||||| .+|..+...+.+ 
T Consensus       581 -~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-  658 (711)
T TIGR00958       581 -DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-  658 (711)
T ss_pred             -CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-
Confidence             12344455555554443211     11111222223455554       7999999999999999 899999888887 


Q ss_pred             HHHHHhCCc-EEEEecC
Q 012882          181 VSRLLSTGT-VLVATSN  196 (454)
Q Consensus       181 l~~L~~~G~-vlV~ThN  196 (454)
                      .. . ..++ +|++||+
T Consensus       659 ~~-~-~~~~TvIiItHr  673 (711)
T TIGR00958       659 SR-S-RASRTVLLIAHR  673 (711)
T ss_pred             hh-c-cCCCeEEEEecc
Confidence            22 2 2455 8999997

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.43  E-value=3.5e-13  Score=120.44  Aligned_cols=104  Identities=21%  Similarity=0.260  Sum_probs=71.3

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChH
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK  119 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~  119 (454)
                      ..+++-++|.|+||+|||||+++++|..++   ..+.+.++..     ..+.++.+     +|.                
T Consensus        23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~~~-----~~i~~~~~-----lS~----------------   73 (144)
T cd03221          23 INPGDRIGLVGRNGAGKSTLLKLIAGELEP---DEGIVTWGST-----VKIGYFEQ-----LSG----------------   73 (144)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHcCCCCC---CceEEEECCe-----EEEEEEcc-----CCH----------------
Confidence            356788999999999999999999999874   2345554431     11111111     000                


Q ss_pred             HHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 012882          120 VMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       120 ~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                                      .......+|+       |++.+|++|+||||+ ++|+.++..+.+++.++  ...++++||+.
T Consensus        74 ----------------G~~~rv~lar-------al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~  127 (144)
T cd03221          74 ----------------GEKMRLALAK-------LLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDR  127 (144)
T ss_pred             ----------------HHHHHHHHHH-------HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCH
Confidence                            0001122343       455899999999999 89999999999999887  23588899874

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.43  E-value=1.5e-13  Score=148.59  Aligned_cols=142  Identities=16%  Similarity=0.151  Sum_probs=86.9

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh--hhcccchhhhhhcccc-----
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN--QVAEKSLRSSISGWIT-----  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~-----  112 (454)
                      ...+.-++|+|+|||||||||++|+|..++ ..|  .+.++.     ...++++.|.  ....+|+.+++.....     
T Consensus        28 i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p-~~G--~i~~~~-----~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~   99 (552)
T TIGR03719        28 FFPGAKIGVLGLNGAGKSTLLRIMAGVDKE-FNG--EARPAP-----GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDA   99 (552)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCc--eEEecC-----CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHH
Confidence            345677999999999999999999999864 233  333321     1224444443  2234566665521100     


Q ss_pred             -----------CCCCCh------------------------HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh------
Q 012882          113 -----------NLPFDS------------------------KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ------  151 (454)
Q Consensus       113 -----------~~~~~~------------------------~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~------  151 (454)
                                 ......                        ..++.++..+++.      . .......+++++      
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~-~~~~~~~LSgGqkqrv~l  172 (552)
T TIGR03719       100 LDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP------P-WDADVTKLSGGERRRVAL  172 (552)
T ss_pred             HHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC------c-ccCchhhcCHHHHHHHHH
Confidence                       000000                        1111122222220      0 112234555554      


Q ss_pred             -hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 012882          152 -HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSNRA  198 (454)
Q Consensus       152 -rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~  198 (454)
                       ++|+.+|++|+||||+ +||+..+..+.++|..+  .++||++||+..
T Consensus       173 a~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~  219 (552)
T TIGR03719       173 CRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRY  219 (552)
T ss_pred             HHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHH
Confidence             6889999999999999 89999999999998876  356999999864

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.42  E-value=2.1e-13  Score=143.44  Aligned_cols=154  Identities=14%  Similarity=0.080  Sum_probs=94.0

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCc-ccCceEEEechh-HHH-HH--------HHHHHHhhh----hhcccch
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGI-VKHRQRFHFHEA-MLK-IN--------EHMHRLWKN----QVAEKSL  103 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~-~~~k~rv~f~~f-~~~-~~--------~~i~~~~~~----~~~~~t~  103 (454)
                      ...+++-++|+|.+||||||++.++.|.++.. ....++|.|+.- ... ..        +.+.++.|+    ..+-.++
T Consensus        31 ~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tI  110 (539)
T COG1123          31 EVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTI  110 (539)
T ss_pred             EecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhH
Confidence            44678899999999999999999999999843 123567777653 110 01        122222222    1111122


Q ss_pred             hhhhhc---cccCCCCC--hHHHHHHHHHHhhhhHHhhcchHH--HHHHHhhhhh-------hhhccCCcEEEeeCCC-C
Q 012882          104 RSSISG---WITNLPFD--SKVMEWVAAEEKYKQEVQMKNILP--AVADKFLVDQ-------HADQRGASILCFDEIQ-T  168 (454)
Q Consensus       104 ~e~l~~---~~~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~--~va~~l~~~~-------rAL~~~p~lL~LDEp~-~  168 (454)
                      ...+.-   ........  ...+.+++...++.      ++..  ....++++++       +||+.+|+||++|||| .
T Consensus       111 g~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~------~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTa  184 (539)
T COG1123         111 GDQIREALRLHGKGSRAEARKRAVELLEQVGLP------DPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTA  184 (539)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHcCCC------ChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccc
Confidence            111100   00000000  01222233333332      2222  2556777776       6999999999999999 8


Q ss_pred             CCHHHHHHHHHHHHHHHh-CCc-EEEEecCCC
Q 012882          169 VDVFAIVALSGIVSRLLS-TGT-VLVATSNRA  198 (454)
Q Consensus       169 lD~~~a~~L~~ll~~L~~-~G~-vlV~ThN~~  198 (454)
                      ||+..+.++.++|+.+.+ .|. +|++|||..
T Consensus       185 LDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~  216 (539)
T COG1123         185 LDVTTQAQILDLLKDLQRELGMAVLFITHDLG  216 (539)
T ss_pred             cCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH
Confidence            999999999999999985 577 999999953

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=1.1e-12  Score=136.21  Aligned_cols=155  Identities=14%  Similarity=0.134  Sum_probs=100.8

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh-hhcccchhhhhhccc
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN-QVAEKSLRSSISGWI  111 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~  111 (454)
                      ...+++-+.|+|++|||||||+.++.|..+++   .+.+++++-      -.++.+.+..+.|. ..-.-|+++|+.-..
T Consensus       360 ~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~  436 (573)
T COG4987         360 TLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLAN  436 (573)
T ss_pred             eecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcC
Confidence            34567889999999999999999999988742   345555442      12356667666665 333456777763322


Q ss_pred             cCCCCChHHHHHHHHHHhhhhHHhhc-----chHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          112 TNLPFDSKVMEWVAAEEKYKQEVQMK-----NILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       112 ~~~~~~~~~~e~ll~~~~l~~~~~~~-----~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                      ..  .+.+.....+...++.+.....     ..+.+-.+.++++.       |+|++++++++||||| +||+.+...+.
T Consensus       437 ~~--AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL  514 (573)
T COG4987         437 PD--ASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVL  514 (573)
T ss_pred             CC--CCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHH
Confidence            11  2333444444555543321111     11112223344443       6888999999999999 99999999988


Q ss_pred             HHHHHHHhCCcEEEEecCCC
Q 012882          179 GIVSRLLSTGTVLVATSNRA  198 (454)
Q Consensus       179 ~ll~~L~~~G~vlV~ThN~~  198 (454)
                      +++.+-.+..++|++||+..
T Consensus       515 ~ll~~~~~~kTll~vTHrL~  534 (573)
T COG4987         515 ALLFEHAEGKTLLMVTHRLR  534 (573)
T ss_pred             HHHHHHhcCCeEEEEecccc
Confidence            88877766555999999863

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.41  E-value=7.3e-13  Score=129.56  Aligned_cols=177  Identities=13%  Similarity=0.138  Sum_probs=117.6

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-------HHH-HHHHHHHhhh--hhcccchhhhhhcc
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-------LKI-NEHMHRLWKN--QVAEKSLRSSISGW  110 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-------~~~-~~~i~~~~~~--~~~~~t~~e~l~~~  110 (454)
                      ..+.-+.|+|-+|||||||++++.+.++| ..++..+...+..       .++ .+.+..+.|+  +.+..|+.+|+-..
T Consensus        52 ~~GeIfViMGLSGSGKSTLvR~~NrLiep-t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fG  130 (386)
T COG4175          52 EEGEIFVIMGLSGSGKSTLVRLLNRLIEP-TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFG  130 (386)
T ss_pred             cCCeEEEEEecCCCCHHHHHHHHhccCCC-CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcc
Confidence            44566889999999999999999999985 3555555443221       122 2445556565  45667777776322


Q ss_pred             --ccCCCCCh--HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          111 --ITNLPFDS--KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       111 --~~~~~~~~--~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                        ..+.+..+  +++.+.++..++.++.      .....++++++       |||+.+|+||++|||+ .|||--+..+.
T Consensus       131 Lev~Gv~~~er~~~a~~~l~~VgL~~~~------~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQ  204 (386)
T COG4175         131 LEVQGVPKAEREERALEALELVGLEGYA------DKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQ  204 (386)
T ss_pred             eeecCCCHHHHHHHHHHHHHHcCchhhh------hcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHH
Confidence              22333222  3444555555554322      22345566665       7999999999999999 79999999999


Q ss_pred             HHHHHHHhC--CcEEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCchhh
Q 012882          179 GIVSRLLST--GTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDY  234 (454)
Q Consensus       179 ~ll~~L~~~--G~vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~Dy  234 (454)
                      .-|.+|.++  .+++++||+...+--.-++         |. |.+.++++..+++.+.
T Consensus       205 deLl~Lq~~l~KTIvFitHDLdEAlriG~r---------Ia-imkdG~ivQ~Gtp~eI  252 (386)
T COG4175         205 DELLELQAKLKKTIVFITHDLDEALRIGDR---------IA-IMKDGEIVQVGTPEEI  252 (386)
T ss_pred             HHHHHHHHHhCCeEEEEecCHHHHHhccce---------EE-EecCCeEEEeCCHHHH
Confidence            888888764  3499999986444333333         33 5678888888887543

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.41  E-value=5.3e-12  Score=114.11  Aligned_cols=147  Identities=20%  Similarity=0.257  Sum_probs=94.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH------HHHHHHHHHhhhhhcc--cchhhhhhccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML------KINEHMHRLWKNQVAE--KSLRSSISGWI  111 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~------~~~~~i~~~~~~~~~~--~t~~e~l~~~~  111 (454)
                      ..++.-+-++||||||||||+-.++|.+|+  .  +.|.|.+...      ++.+.-.|+.|...+.  +.+    |+.+
T Consensus        22 v~aGe~~HliGPNGaGKSTLLA~lAGm~~~--s--Gsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV----~~YL   93 (248)
T COG4138          22 VRAGEILHLVGPNGAGKSTLLARMAGMTSG--S--GSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPV----WHYL   93 (248)
T ss_pred             cccceEEEEECCCCccHHHHHHHHhCCCCC--C--ceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhh----hhhh
Confidence            456777999999999999999999999974  2  3444443221      2222233444432221  222    3322


Q ss_pred             cCCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh--------------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882          112 TNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ--------------HADQRGASILCFDEIQ-TVDVFAIVA  176 (454)
Q Consensus       112 ~~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~--------------rAL~~~p~lL~LDEp~-~lD~~~a~~  176 (454)
                      .-.-.+.++...+-...+.   .+.++.+.+....++++.              ..+-...++|++|||. .+|++....
T Consensus        94 ~L~qP~~~~a~~i~~i~~~---L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~a  170 (248)
T COG4138          94 TLHQPDKTRTELLNDVAGA---LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSA  170 (248)
T ss_pred             hhcCchHHHHHHHHHHHhh---hcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHH
Confidence            2222233444433332222   234556666777777765              2344567899999999 899999999


Q ss_pred             HHHHHHHHHhCCc-EEEEecCC
Q 012882          177 LSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       177 L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      |.+++.++...|. ||++.|+.
T Consensus       171 Ldrll~~~c~~G~~vims~HDL  192 (248)
T COG4138         171 LDRLLSALCQQGLAIVMSSHDL  192 (248)
T ss_pred             HHHHHHHHHhCCcEEEEeccch
Confidence            9999999999999 77777763

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.41  E-value=6e-13  Score=128.14  Aligned_cols=143  Identities=16%  Similarity=0.184  Sum_probs=102.7

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----------HHHHHHHHHHhhh--hhcccchhhhhhccc
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----------LKINEHMHRLWKN--QVAEKSLRSSISGWI  111 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----------~~~~~~i~~~~~~--~~~~~t~~e~l~~~~  111 (454)
                      .-..|.|++|+|||||+++|+|.+.|   .+++++.++..          .--+++++|+.|+  +++.+|+..|+....
T Consensus        25 GvTAlFG~SGsGKTslin~IaGL~rP---deG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~  101 (352)
T COG4148          25 GITALFGPSGSGKTSLINMIAGLTRP---DEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGM  101 (352)
T ss_pred             ceEEEecCCCCChhhHHHHHhccCCc---cccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhh
Confidence            33669999999999999999999874   34555544321          2234678888887  788899999883222


Q ss_pred             cCCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHH
Q 012882          112 TNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSR  183 (454)
Q Consensus       112 ~~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~  183 (454)
                      ...  .....+.+...+++..      .+.+.-..++++.       |||+..|++|++|||. .||.....++.-.+++
T Consensus       102 ~~~--~~~~fd~iv~lLGI~h------LL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylER  173 (352)
T COG4148         102 WKS--MRAQFDQLVALLGIEH------LLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLER  173 (352)
T ss_pred             ccc--chHhHHHHHHHhCcHH------HHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHH
Confidence            111  2345566666666533      2233333445443       7899999999999999 8999999999999999


Q ss_pred             HHhC-Cc-EEEEecCC
Q 012882          184 LLST-GT-VLVATSNR  197 (454)
Q Consensus       184 L~~~-G~-vlV~ThN~  197 (454)
                      |.++ .+ ++.+||..
T Consensus       174 L~~e~~IPIlYVSHS~  189 (352)
T COG4148         174 LRDEINIPILYVSHSL  189 (352)
T ss_pred             HHHhcCCCEEEEecCH
Confidence            9876 66 99999963

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.40  E-value=2e-12  Score=122.87  Aligned_cols=144  Identities=14%  Similarity=0.111  Sum_probs=92.2

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhc--cccCCCCCh
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISG--WITNLPFDS  118 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~--~~~~~~~~~  118 (454)
                      ..+.-++|+|+||||||||+++|+|.++|. .++..+...-..      +-.+.....+++|.++|+..  ...++...+
T Consensus        51 ~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt-~G~v~v~G~v~~------li~lg~Gf~pelTGreNi~l~~~~~G~~~~e  123 (249)
T COG1134          51 YKGERVGIIGHNGAGKSTLLKLIAGIYKPT-SGKVKVTGKVAP------LIELGAGFDPELTGRENIYLRGLILGLTRKE  123 (249)
T ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCccCCC-CceEEEcceEeh------hhhcccCCCcccchHHHHHHHHHHhCccHHH
Confidence            456779999999999999999999999863 555555432110      00112224456777777622  222222222


Q ss_pred             --HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCC
Q 012882          119 --KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTG  188 (454)
Q Consensus       119 --~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G  188 (454)
                        ...+++.+...+...      +..-.+.++.++       -|...+|++|++||.. +-|..-+..=.+.+.++.+++
T Consensus       124 i~~~~~eIieFaELG~f------i~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~  197 (249)
T COG1134         124 IDEKVDEIIEFAELGDF------IDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKN  197 (249)
T ss_pred             HHHHHHHHHHHHHHHHH------hhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcC
Confidence              455555555554332      111122233332       2556899999999999 899998888888888886665


Q ss_pred             c-EEEEecCC
Q 012882          189 T-VLVATSNR  197 (454)
Q Consensus       189 ~-vlV~ThN~  197 (454)
                      . ++++||+.
T Consensus       198 ~tiv~VSHd~  207 (249)
T COG1134         198 KTIVLVSHDL  207 (249)
T ss_pred             CEEEEEECCH
Confidence            6 99999984

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.40  E-value=3.8e-13  Score=147.83  Aligned_cols=150  Identities=15%  Similarity=0.153  Sum_probs=96.4

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HHH----HHHHHHHhhh--hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LKI----NEHMHRLWKN--QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~~----~~~i~~~~~~--~~~~~t~~e~l  107 (454)
                      ..+++-+.|+|+||||||||+++|+|..++   ..+++.+++..      ...    .+.+.++.|.  ..+..++.+++
T Consensus        31 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl  107 (648)
T PRK10535         31 IYAGEMVAIVGASGSGKSTLMNILGCLDKP---TSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNV  107 (648)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHH
Confidence            356788999999999999999999999874   23455554321      111    1234555554  23345666665


Q ss_pred             hccc--cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          108 SGWI--TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       108 ~~~~--~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      ....  ......  ...+.+++..+++...      +......+++++       ++|+.+|++|+||||+ ++|+..+.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~------~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~  181 (648)
T PRK10535        108 EVPAVYAGLERKQRLLRAQELLQRLGLEDR------VEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGE  181 (648)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHCCChhh------hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHH
Confidence            2111  111111  1233444555544321      112223344443       7888999999999999 89999999


Q ss_pred             HHHHHHHHHHhCCc-EEEEecCCC
Q 012882          176 ALSGIVSRLLSTGT-VLVATSNRA  198 (454)
Q Consensus       176 ~L~~ll~~L~~~G~-vlV~ThN~~  198 (454)
                      .+.+++.++.++|. ++++||+..
T Consensus       182 ~l~~ll~~l~~~g~tilivsH~~~  205 (648)
T PRK10535        182 EVMAILHQLRDRGHTVIIVTHDPQ  205 (648)
T ss_pred             HHHHHHHHHHhcCCEEEEECCCHH
Confidence            99999999987776 899999853

>PRK08181 transposase; Validated

Probab=99.39  E-value=2e-12  Score=127.02  Aligned_cols=142  Identities=20%  Similarity=0.242  Sum_probs=98.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChHHH
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVM  121 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~~~  121 (454)
                      .+++++|+||+|+|||+|+.++...+.   ..+..+.|.... ++...+.....                          
T Consensus       105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~~~-~L~~~l~~a~~--------------------------  154 (269)
T PRK08181        105 KGANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTRTT-DLVQKLQVARR--------------------------  154 (269)
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeeeHH-HHHHHHHHHHh--------------------------
Confidence            467899999999999999999987552   223455554332 22222211100                          


Q ss_pred             HHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEecCCCc
Q 012882          122 EWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGTVLVATSNRAP  199 (454)
Q Consensus       122 e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P  199 (454)
                                     ......+.+.+        .+++|||+||+.  ..+...+..|.+++....++ .-+|+|+|.+|
T Consensus       155 ---------------~~~~~~~l~~l--------~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~-~s~IiTSN~~~  210 (269)
T PRK08181        155 ---------------ELQLESAIAKL--------DKFDLLILDDLAYVTKDQAETSVLFELISARYER-RSILITANQPF  210 (269)
T ss_pred             ---------------CCcHHHHHHHH--------hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhC-CCEEEEcCCCH
Confidence                           00112233333        579999999998  47788888999999988775 47888889999


Q ss_pred             cchhcCCchhhhhHHHHHHHHhhccccccCCchhhhhhc
Q 012882          200 WDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLI  238 (454)
Q Consensus       200 ~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~DyR~~~  238 (454)
                      .+|..---+...-...+++|.++|.++.+.++ |||+..
T Consensus       211 ~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~-s~R~~~  248 (269)
T PRK08181        211 GEWNRVFPDPAMTLAAVDRLVHHATIFEMNVE-SYRRRT  248 (269)
T ss_pred             HHHHHhcCCccchhhHHHhhhcCceEEecCCc-cchhHH
Confidence            99987332233335668999999999999986 999854

>PRK08939 primosomal protein DnaI; Reviewed

Probab=99.39  E-value=2.9e-12  Score=128.29  Aligned_cols=141  Identities=19%  Similarity=0.279  Sum_probs=95.0

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChHHH
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVM  121 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~~~  121 (454)
                      .++|+||+|++|+|||+|+.+++..+...-.....+++..++..+...+..                             
T Consensus       155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~-----------------------------  205 (306)
T PRK08939        155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISD-----------------------------  205 (306)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhc-----------------------------
Confidence            468999999999999999999998764110111233444444433322110                             


Q ss_pred             HHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC--CCCHHHH-HHHHHHHHHHHhCCcEEEEecCCC
Q 012882          122 EWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ--TVDVFAI-VALSGIVSRLLSTGTVLVATSNRA  198 (454)
Q Consensus       122 e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~--~lD~~~a-~~L~~ll~~L~~~G~vlV~ThN~~  198 (454)
                                      .......+.+        .+++||||||+.  .+....+ ..|..++......+..+|+|||.+
T Consensus       206 ----------------~~~~~~l~~l--------~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~  261 (306)
T PRK08939        206 ----------------GSVKEKIDAV--------KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD  261 (306)
T ss_pred             ----------------CcHHHHHHHh--------cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence                            0112233333        579999999998  3444444 455666676666677899999999


Q ss_pred             ccchhcC------C-chhhhhHHHHHHHHhhccccccCCchhhhh
Q 012882          199 PWDLNQD------G-MQREIFQKLVAKLEKHCEIIPIGSEVDYRR  236 (454)
Q Consensus       199 P~dLy~~------~-l~r~~F~~~I~~L~~~~~vv~l~~~~DyR~  236 (454)
                      +++|...      | .....-...+++|.++|+++.+.|. |||.
T Consensus       262 ~~el~~~~~~~~~g~~e~~~a~ri~dRI~~~~~~i~l~G~-s~R~  305 (306)
T PRK08939        262 FDELEHHLAYTQRGEDETWKAARIMERIRYLAKEVHLEGK-NRRN  305 (306)
T ss_pred             HHHHHHHHhhhccCcchhhHHHHHHHHHHHhcEEEEeecC-CCCC
Confidence            9999872      1 1233455789999999999999987 8885

>PRK06526 transposase; Provisional

Probab=99.39  E-value=2.3e-12  Score=125.73  Aligned_cols=143  Identities=20%  Similarity=0.178  Sum_probs=98.8

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChHH
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV  120 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~~  120 (454)
                      ..+++++|+||+|+|||+|+.++...+.   ..+.++.|.... ++...+.....                         
T Consensus        96 ~~~~nlll~Gp~GtGKThLa~al~~~a~---~~g~~v~f~t~~-~l~~~l~~~~~-------------------------  146 (254)
T PRK06526         96 TGKENVVFLGPPGTGKTHLAIGLGIRAC---QAGHRVLFATAA-QWVARLAAAHH-------------------------  146 (254)
T ss_pred             hcCceEEEEeCCCCchHHHHHHHHHHHH---HCCCchhhhhHH-HHHHHHHHHHh-------------------------
Confidence            3568999999999999999999977552   223455443221 11111111000                         


Q ss_pred             HHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 012882          121 MEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGTVLVATSNRA  198 (454)
Q Consensus       121 ~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~  198 (454)
                                      ...+....+.+        .++++||+||+.  ..+...+..|..++....+++ .+|+|+|.+
T Consensus       147 ----------------~~~~~~~l~~l--------~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~~  201 (254)
T PRK06526        147 ----------------AGRLQAELVKL--------GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNKP  201 (254)
T ss_pred             ----------------cCcHHHHHHHh--------ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCCC
Confidence                            00111122233        468999999998  467888889999998877765 577888999


Q ss_pred             ccchhcCCchhhhhHHHHHHHHhhccccccCCchhhhhhc
Q 012882          199 PWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLI  238 (454)
Q Consensus       199 P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~DyR~~~  238 (454)
                      |.+|+.---++..-...+++|.++|.++.+.|+ |||...
T Consensus       202 ~~~w~~~~~d~~~a~ai~dRl~~~~~~i~~~g~-s~R~~~  240 (254)
T PRK06526        202 FGRWGEVFGDDVVAAAMIDRLVHHAEVISLKGD-SYRLKD  240 (254)
T ss_pred             HHHHHHHcCChHHHHHHHHHHhcCceEEeecCC-Ccchhh
Confidence            999987544455556778999999999999986 999854

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.39  E-value=2.3e-12  Score=120.04  Aligned_cols=163  Identities=14%  Similarity=0.119  Sum_probs=104.4

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---H-HHHHHHHHHhhh----hhcccchhhhhhcc
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---L-KINEHMHRLWKN----QVAEKSLRSSISGW  110 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---~-~~~~~i~~~~~~----~~~~~t~~e~l~~~  110 (454)
                      ..+.+.-+-++|.||+|||||+++++|.+++ ..++..+......   . .-...+..+.|+    ..+.+|+.||+..+
T Consensus        28 ~I~~g~FvtViGsNGAGKSTlln~iaG~l~~-t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la  106 (263)
T COG1101          28 EIAEGDFVTVIGSNGAGKSTLLNAIAGDLKP-TSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALA  106 (263)
T ss_pred             eecCCceEEEEcCCCccHHHHHHHhhCcccc-CCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHH
Confidence            3445666999999999999999999999975 3555555443221   1 112334555555    35678999997332


Q ss_pred             cc-----CCCC--ChHHHHHH---HHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHH
Q 012882          111 IT-----NLPF--DSKVMEWV---AAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVF  172 (454)
Q Consensus       111 ~~-----~~~~--~~~~~e~l---l~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~  172 (454)
                      ..     ++..  ..++.+..   +..+++    +..+.+..-...+++++       .|.++.|+||+|||-| .|||.
T Consensus       107 ~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~l----gLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPk  182 (263)
T COG1101         107 ESRGKKRGLSSALNERRRSSFRERLARLGL----GLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPK  182 (263)
T ss_pred             HhcCcccccchhhhHHHHHHHHHHHhhccc----chhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcc
Confidence            21     1221  11222222   222221    12333444455566665       4677999999999999 89999


Q ss_pred             HHHHHHHHHHHHHhCC-c-EEEEecCCCccchhcCC
Q 012882          173 AIVALSGIVSRLLSTG-T-VLVATSNRAPWDLNQDG  206 (454)
Q Consensus       173 ~a~~L~~ll~~L~~~G-~-vlV~ThN~~P~dLy~~~  206 (454)
                      .+..+.++=.++.++. . .+++|||..-+--|-++
T Consensus       183 ta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~R  218 (263)
T COG1101         183 TAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNR  218 (263)
T ss_pred             hHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCe
Confidence            9999999999988764 4 99999997544444444

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.39  E-value=1.2e-12  Score=141.67  Aligned_cols=151  Identities=12%  Similarity=0.107  Sum_probs=91.0

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhhh-hcccchhhhhhccccCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKNQ-VAEKSLRSSISGWITNL  114 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~~~  114 (454)
                      .++++-++|+||||||||||+++|+|..++. .|...+...+.    ..+.++.+.++.|+. .-..++.++.     ..
T Consensus       365 i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~-----~~  438 (555)
T TIGR01194       365 IAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ-EGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE-----GE  438 (555)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc-----cc
Confidence            3567779999999999999999999988752 44444332211    124455666666541 1122333331     01


Q ss_pred             CCChHHHHHHHHHHhhhhHHhh-cchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH-HHHH
Q 012882          115 PFDSKVMEWVAAEEKYKQEVQM-KNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI-VSRL  184 (454)
Q Consensus       115 ~~~~~~~e~ll~~~~l~~~~~~-~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l-l~~L  184 (454)
                      ..+.+..++.+...++...... .+-+.. ...+++++       ||++++|++|+||||+ ++|+.+...+.+. +..+
T Consensus       439 ~~~~~~~~~~~~~~~l~~~~~~lp~g~~t-~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~  517 (555)
T TIGR01194       439 HASLDNAQQYLQRLEIADKVKIEDGGFST-TTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDL  517 (555)
T ss_pred             chhHHHHHHHHHHcCCchhhcccccccCC-cccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence            1122344445555554321100 000000 13455554       7889999999999999 8999999998764 4556


Q ss_pred             HhCCc-EEEEecCC
Q 012882          185 LSTGT-VLVATSNR  197 (454)
Q Consensus       185 ~~~G~-vlV~ThN~  197 (454)
                      ...|+ +|++||+.
T Consensus       518 ~~~~~tiiiisH~~  531 (555)
T TIGR01194       518 KRQGKTIIIISHDD  531 (555)
T ss_pred             HhCCCEEEEEeccH
Confidence            55566 88899873

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.38  E-value=7.5e-13  Score=142.90  Aligned_cols=149  Identities=16%  Similarity=0.152  Sum_probs=89.3

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhhh-hcccchhhhhhccccCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKNQ-VAEKSLRSSISGWITNL  114 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~~~  114 (454)
                      .++++-++|+||||||||||+++|+|..++ ..|...+.....    ...+++.+.++.|+. .-+.|+.++      ..
T Consensus       346 i~~G~~~aivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n------~~  418 (547)
T PRK10522        346 IKRGELLFLIGGNGSGKSTLAMLLTGLYQP-QSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE------GK  418 (547)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc------cC
Confidence            456778999999999999999999999874 234333322211    124455566665542 111222222      01


Q ss_pred             CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh
Q 012882          115 PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS  186 (454)
Q Consensus       115 ~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~  186 (454)
                      ..+.+..++.+..+++.......+... -...+++++       ||++++|++|+||||+ ++|+.+...+.+.+..+.+
T Consensus       419 ~~~~~~~~~~~~~~~l~~~~~~~~~~~-~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~  497 (547)
T PRK10522        419 PANPALVEKWLERLKMAHKLELEDGRI-SNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQ  497 (547)
T ss_pred             chHHHHHHHHHHHcCCchhhhccccCC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
Confidence            122233444444444322110000000 012345554       7889999999999999 8999999999888876543


Q ss_pred             -CCc-EEEEecC
Q 012882          187 -TGT-VLVATSN  196 (454)
Q Consensus       187 -~G~-vlV~ThN  196 (454)
                       .|. +|++||+
T Consensus       498 ~~~~tvi~itH~  509 (547)
T PRK10522        498 EMGKTIFAISHD  509 (547)
T ss_pred             hCCCEEEEEEec
Confidence             455 9999997

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.38  E-value=1.5e-12  Score=141.19  Aligned_cols=170  Identities=14%  Similarity=0.156  Sum_probs=111.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITNL  114 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~  114 (454)
                      .++++-++|+||+|||||||+++|.+..++ ..|+..+...+.    ...+++.++.++|+ ..-+.|+.+|+.-.... 
T Consensus       352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~-~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~-  429 (567)
T COG1132         352 IEPGEKVAIVGPSGSGKSTLIKLLLRLYDP-TSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPD-  429 (567)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCC-
Confidence            457788999999999999999999999975 355555533221    23577888888877 23346888888433222 


Q ss_pred             CCChHHHHHHHHHHhhhhH---H--hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882          115 PFDSKVMEWVAAEEKYKQE---V--QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV  181 (454)
Q Consensus       115 ~~~~~~~e~ll~~~~l~~~---~--~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll  181 (454)
                       .+.+...+.+......+.   .  +.+..+.+-...+++++       ||++++|++|+|||+| .+|..+...+.+.+
T Consensus       430 -at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l  508 (567)
T COG1132         430 -ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDAL  508 (567)
T ss_pred             -CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHH
Confidence             223333333333322221   0  11111111123445554       7999999999999999 89999999999999


Q ss_pred             HHHHhCCcEEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCc
Q 012882          182 SRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSE  231 (454)
Q Consensus       182 ~~L~~~G~vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~  231 (454)
                      ..+.+..++++++|+                   +..++..-+++.++.+
T Consensus       509 ~~l~~~rT~iiIaHR-------------------lsti~~aD~IiVl~~G  539 (567)
T COG1132         509 KKLLKGRTTLIIAHR-------------------LSTIKNADRIIVLDNG  539 (567)
T ss_pred             HHHhcCCEEEEEecc-------------------HhHHHhCCEEEEEECC
Confidence            988743358889986                   3445554456666666

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.38  E-value=1.9e-12  Score=134.14  Aligned_cols=148  Identities=17%  Similarity=0.187  Sum_probs=95.3

Q ss_pred             CCCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCC
Q 012882           38 TAPPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFD  117 (454)
Q Consensus        38 ~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~  117 (454)
                      .+.....-+.++||||||||||+++++|.+.| ..|..+-|-|.-+...++..+..   ..-+.+..+++.-.... ...
T Consensus       411 fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p-~~G~vs~~~H~~~~~y~Qh~~e~---ldl~~s~le~~~~~~~~-~~~  485 (614)
T KOG0927|consen  411 FGIDLDSRVALVGPNGAGKSTLLKLITGDLQP-TIGMVSRHSHNKLPRYNQHLAEQ---LDLDKSSLEFMMPKFPD-EKE  485 (614)
T ss_pred             cccCcccceeEecCCCCchhhhHHHHhhcccc-ccccccccccccchhhhhhhHhh---cCcchhHHHHHHHhccc-cch
Confidence            34455667999999999999999999998865 34555555554443223222211   11222333333111111 234


Q ss_pred             hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc
Q 012882          118 SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT  189 (454)
Q Consensus       118 ~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~  189 (454)
                      ......+++.+++.+..+     ......++.++       +.+++.|.||+||||| ++|+.+.+.+.+.|++.  .|.
T Consensus       486 ~e~~r~ilgrfgLtgd~q-----~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Gg  558 (614)
T KOG0927|consen  486 LEEMRSILGRFGLTGDAQ-----VVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF--PGG  558 (614)
T ss_pred             HHHHHHHHHHhCCCcccc-----ccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCc
Confidence            466777888888864322     11223334443       3556899999999999 89999999999888876  678


Q ss_pred             EEEEecCC
Q 012882          190 VLVATSNR  197 (454)
Q Consensus       190 vlV~ThN~  197 (454)
                      |+++||++
T Consensus       559 vv~vSHDf  566 (614)
T KOG0927|consen  559 VVLVSHDF  566 (614)
T ss_pred             eeeeechh
Confidence            99999986

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.36  E-value=4.5e-12  Score=130.66  Aligned_cols=151  Identities=17%  Similarity=0.185  Sum_probs=97.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH----HHHHHHHHHhhh-hhcccchhhhhhccccCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML----KINEHMHRLWKN-QVAEKSLRSSISGWITNL  114 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~----~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~  114 (454)
                      ..++.+++|+||+|||||||.+++.|..++ ..+..|....+..+    .+-+.++|++|. ..-..|+.+|+.-.-.  
T Consensus       359 l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p-~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~--  435 (580)
T COG4618         359 LQAGEALGIIGPSGSGKSTLARLLVGIWPP-TSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGE--  435 (580)
T ss_pred             ecCCceEEEECCCCccHHHHHHHHHccccc-CCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccc--
Confidence            356788999999999999999999998875 46777776655433    344567788876 2334577777622110  


Q ss_pred             CCChHHHHHHHHHHhhhh------HH--hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          115 PFDSKVMEWVAAEEKYKQ------EV--QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       115 ~~~~~~~e~ll~~~~l~~------~~--~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                      ..+.   +.+.+..++.+      ..  +.+..+..--..+++++       |||..+|.+++||||- +||......|.
T Consensus       436 ~~d~---~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~  512 (580)
T COG4618         436 EADP---EKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALA  512 (580)
T ss_pred             cCCH---HHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHH
Confidence            0111   11222222111      00  00001110111223332       7889999999999999 89999999999


Q ss_pred             HHHHHHHhCCc-EEEEecC
Q 012882          179 GIVSRLLSTGT-VLVATSN  196 (454)
Q Consensus       179 ~ll~~L~~~G~-vlV~ThN  196 (454)
                      +-+..+.++|+ ++++||-
T Consensus       513 ~Ai~~~k~rG~~vvviaHR  531 (580)
T COG4618         513 AAILAAKARGGTVVVIAHR  531 (580)
T ss_pred             HHHHHHHHcCCEEEEEecC
Confidence            99999999988 8888874

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.36  E-value=2.1e-12  Score=152.56  Aligned_cols=171  Identities=12%  Similarity=0.132  Sum_probs=112.5

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc-----------------------------------------------
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV-----------------------------------------------   71 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~-----------------------------------------------   71 (454)
                      ..++++-++|+|++|||||||+++|.+...+..                                               
T Consensus      1190 ~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1269 (1466)
T PTZ00265       1190 SCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGED 1269 (1466)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            446778899999999999999999999886410                                               


Q ss_pred             ----cCceEEEechh------HHHHHHHHHHHhhh-hhcccchhhhhhccccCCCCChHHHHHHHHHHhhhhH---H--h
Q 012882           72 ----KHRQRFHFHEA------MLKINEHMHRLWKN-QVAEKSLRSSISGWITNLPFDSKVMEWVAAEEKYKQE---V--Q  135 (454)
Q Consensus        72 ----~~k~rv~f~~f------~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~~~~~~~~e~ll~~~~l~~~---~--~  135 (454)
                          ...+.|.+.+.      ...+++.+++++|+ ..-..|+.+|+.....  ..+.+.++..+...++...   .  +
T Consensus      1270 ~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~--~at~eeI~~A~k~A~l~~fI~~LP~G 1347 (1466)
T PTZ00265       1270 STVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE--DATREDVKRACKFAAIDEFIESLPNK 1347 (1466)
T ss_pred             cccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCC--CCCHHHHHHHHHHcCCHHHHHhCccc
Confidence                02344444321      24677888999888 3446789999844321  1233444444444443221   0  0


Q ss_pred             hcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh-CCc-EEEEecCCCccchhcC
Q 012882          136 MKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS-TGT-VLVATSNRAPWDLNQD  205 (454)
Q Consensus       136 ~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~-~G~-vlV~ThN~~P~dLy~~  205 (454)
                      .+-.+..-...|++++       |||+++|+||+||||| .||..+...+.+.|..+.. +|+ +|++||.         
T Consensus      1348 ydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHR--------- 1418 (1466)
T PTZ00265       1348 YDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR--------- 1418 (1466)
T ss_pred             cCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEech---------
Confidence            1111111122345554       7999999999999999 8999999999999998863 455 8999986         


Q ss_pred             CchhhhhHHHHHHHHhhccccccCC
Q 012882          206 GMQREIFQKLVAKLEKHCEIIPIGS  230 (454)
Q Consensus       206 ~l~r~~F~~~I~~L~~~~~vv~l~~  230 (454)
                                +..++.--+++.++.
T Consensus      1419 ----------lsti~~aD~Ivvl~~ 1433 (1466)
T PTZ00265       1419 ----------IASIKRSDKIVVFNN 1433 (1466)
T ss_pred             ----------HHHHHhCCEEEEEeC
Confidence                      345655556666665

>PRK09183 transposase/IS protein; Provisional

Probab=99.35  E-value=7.4e-12  Score=122.67  Aligned_cols=145  Identities=17%  Similarity=0.184  Sum_probs=97.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChH
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK  119 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~  119 (454)
                      ...+.+++|+||+|+|||||+.+|+....   ..+..+.|.... ++...+.....                        
T Consensus        99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~---~~G~~v~~~~~~-~l~~~l~~a~~------------------------  150 (259)
T PRK09183         99 IERNENIVLLGPSGVGKTHLAIALGYEAV---RAGIKVRFTTAA-DLLLQLSTAQR------------------------  150 (259)
T ss_pred             hhcCCeEEEEeCCCCCHHHHHHHHHHHHH---HcCCeEEEEeHH-HHHHHHHHHHH------------------------
Confidence            34578899999999999999999976542   123344443211 11111111000                        


Q ss_pred             HHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 012882          120 VMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       120 ~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                                       ...+..+.+..       ...+++||+||+.  ..+...+..|..++....+++. +|+|+|.
T Consensus       151 -----------------~~~~~~~~~~~-------~~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~  205 (259)
T PRK09183        151 -----------------QGRYKTTLQRG-------VMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL  205 (259)
T ss_pred             -----------------CCcHHHHHHHH-------hcCCCEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence                             00011122121       1468999999998  4777888899999998887664 6789999


Q ss_pred             CccchhcCC-chhhhhHHHHHHHHhhccccccCCchhhhhhc
Q 012882          198 APWDLNQDG-MQREIFQKLVAKLEKHCEIIPIGSEVDYRRLI  238 (454)
Q Consensus       198 ~P~dLy~~~-l~r~~F~~~I~~L~~~~~vv~l~~~~DyR~~~  238 (454)
                      +|.+|+.-- -+...-...+++|.++|.++.+.|+ |||...
T Consensus       206 ~~~~w~~~~~~d~~~~~ai~dRl~~~~~~i~~~g~-s~R~~~  246 (259)
T PRK09183        206 PFGQWDQTFAGDAALTSAMLDRLLHHSHVVQIKGE-SYRLKQ  246 (259)
T ss_pred             CHHHHHHHhcCchhHHHHHHHHHhcceEEEeecCC-CCcccc
Confidence            999998752 2333445688999999999999986 999854

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.35  E-value=2.1e-12  Score=124.85  Aligned_cols=133  Identities=17%  Similarity=0.165  Sum_probs=87.2

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH-HHHHHHHHHhhhhhcccchhhhhhccccCCCCC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML-KINEHMHRLWKNQVAEKSLRSSISGWITNLPFD  117 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~-~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~  117 (454)
                      ....++.++|+|++|||||||.+++.+..++   ..+.|.|.+--. .+.   ..-                       .
T Consensus        35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~p---t~G~i~f~g~~i~~~~---~~~-----------------------~   85 (268)
T COG4608          35 SIKEGETLGLVGESGCGKSTLGRLILGLEEP---TSGEILFEGKDITKLS---KEE-----------------------R   85 (268)
T ss_pred             EEcCCCEEEEEecCCCCHHHHHHHHHcCcCC---CCceEEEcCcchhhcc---hhH-----------------------H
Confidence            3456788999999999999999999999974   245666643210 000   000                       0


Q ss_pred             hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC-C
Q 012882          118 SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST-G  188 (454)
Q Consensus       118 ~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~-G  188 (454)
                      .+.+.+++...++..     +.+.+.-.++++++       |||+.+|+++++|||+ .||+..+..+..+|..+.+. |
T Consensus        86 ~~~v~elL~~Vgl~~-----~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~  160 (268)
T COG4608          86 RERVLELLEKVGLPE-----EFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELG  160 (268)
T ss_pred             HHHHHHHHHHhCCCH-----HHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhC
Confidence            012223333333211     11122223344443       6777999999999999 89999999999999999865 7


Q ss_pred             c-EEEEecCCCccchhcC
Q 012882          189 T-VLVATSNRAPWDLNQD  205 (454)
Q Consensus       189 ~-vlV~ThN~~P~dLy~~  205 (454)
                      . .+++|||..-..-.++
T Consensus       161 lt~lFIsHDL~vv~~isd  178 (268)
T COG4608         161 LTYLFISHDLSVVRYISD  178 (268)
T ss_pred             CeEEEEEEEHHhhhhhcc
Confidence            7 9999999654444443

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.35  E-value=1.8e-12  Score=142.32  Aligned_cols=46  Identities=22%  Similarity=0.368  Sum_probs=41.3

Q ss_pred             hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecCCCc
Q 012882          152 HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSNRAP  199 (454)
Q Consensus       152 rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P  199 (454)
                      ++|+.+|+||+||||+ +||+.++..|.++|..+  .+.||++||++..
T Consensus       169 raL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~~  215 (635)
T PRK11147        169 RALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRSF  215 (635)
T ss_pred             HHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHHH
Confidence            6888999999999999 89999999999999987  3679999999753

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.35  E-value=2.9e-12  Score=137.15  Aligned_cols=155  Identities=16%  Similarity=0.151  Sum_probs=103.2

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh-hhcccchhhhhhccccC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN-QVAEKSLRSSISGWITN  113 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~  113 (454)
                      ..++++-++|+||+|+||||+..+|-....|. .|...+......    ..+|+.++.+.|+ ..-..|+.||+..+.. 
T Consensus       490 ti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt-sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~-  567 (716)
T KOG0058|consen  490 TIRPGEVVALVGPSGSGKSTIASLLLRFYDPT-SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD-  567 (716)
T ss_pred             eeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC-CCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC-
Confidence            45678999999999999999999999988752 444444333322    3567888888887 3445688888854433 


Q ss_pred             CCCChHHHHHHHHHHhhhh---HH--hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882          114 LPFDSKVMEWVAAEEKYKQ---EV--QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI  180 (454)
Q Consensus       114 ~~~~~~~~e~ll~~~~l~~---~~--~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l  180 (454)
                       ..+++.+++.++...-++   ..  +.+-...+-.-.|++++       |||+++|.||||||-| .||..+...+.+.
T Consensus       568 -~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~a  646 (716)
T KOG0058|consen  568 -NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEA  646 (716)
T ss_pred             -CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHH
Confidence             233333333333222211   00  00001111112344444       7889999999999999 7999999999999


Q ss_pred             HHHHHhCCcEEEEecC
Q 012882          181 VSRLLSTGTVLVATSN  196 (454)
Q Consensus       181 l~~L~~~G~vlV~ThN  196 (454)
                      |.++.+..+||+++|.
T Consensus       647 L~~~~~~rTVlvIAHR  662 (716)
T KOG0058|consen  647 LDRLMQGRTVLVIAHR  662 (716)
T ss_pred             HHHhhcCCeEEEEehh
Confidence            9998877569999985

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.35  E-value=3.3e-12  Score=150.97  Aligned_cols=157  Identities=14%  Similarity=0.146  Sum_probs=98.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEe-chh----HHHHHHHHHHHhhh-hhcccchhhhhhccccC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHF-HEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITN  113 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f-~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~  113 (454)
                      .++++-++|+||||||||||+++|.|..++ ..|...++. +..    ...+++.++++.|+ ..-..|+.+++......
T Consensus       408 i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p-~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~  486 (1466)
T PTZ00265        408 LTEGKTYAFVGESGCGKSTILKLIERLYDP-TEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYS  486 (1466)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHHhccC-CCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCC
Confidence            456788999999999999999999999875 244443321 111    12456677888776 22235888887332110


Q ss_pred             C-------------------------------------------------------CCChHHHHHHHHHHhhhhHH----
Q 012882          114 L-------------------------------------------------------PFDSKVMEWVAAEEKYKQEV----  134 (454)
Q Consensus       114 ~-------------------------------------------------------~~~~~~~e~ll~~~~l~~~~----  134 (454)
                      .                                                       ....+.+.+.+...++....    
T Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp  566 (1466)
T PTZ00265        487 LKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALP  566 (1466)
T ss_pred             ccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCc
Confidence            0                                                       01112233333333332210    


Q ss_pred             -hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh-CCc-EEEEecCC
Q 012882          135 -QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS-TGT-VLVATSNR  197 (454)
Q Consensus       135 -~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~-~G~-vlV~ThN~  197 (454)
                       +.+..+..-...+++++       |||+++|+||+||||+ +||..+...+.+.|.++.+ +|. +|++||+.
T Consensus       567 ~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrl  640 (1466)
T PTZ00265        567 DKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRL  640 (1466)
T ss_pred             cccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence             00000111123355554       7999999999999999 8999999999999999975 466 88899873

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=3.7e-12  Score=132.37  Aligned_cols=170  Identities=12%  Similarity=0.110  Sum_probs=113.4

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh-hhcccchhhhhhccccC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN-QVAEKSLRSSISGWITN  113 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~  113 (454)
                      ..+.++-|+|+|+|||||||++++|.....  .+|+.++...+..    ..+++.|++++|+ ..-+-|+..|+..+.  
T Consensus       374 ~I~kGekVaIvG~nGsGKSTilr~LlrF~d--~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn--  449 (591)
T KOG0057|consen  374 TIPKGEKVAIVGSNGSGKSTILRLLLRFFD--YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGN--  449 (591)
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHHHHhc--cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCC--
Confidence            345667799999999999999999999886  4666777665433    3567788888887 333446666662221  


Q ss_pred             CCCChHHHHHHHHHHhhhhH---H--hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882          114 LPFDSKVMEWVAAEEKYKQE---V--QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI  180 (454)
Q Consensus       114 ~~~~~~~~e~ll~~~~l~~~---~--~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l  180 (454)
                      ...+.+.+-+.....++++.   .  +..-.+.+-...+++++       ||++++|+|++|||+| .||..+...+.+.
T Consensus       450 ~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~  529 (591)
T KOG0057|consen  450 PSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDM  529 (591)
T ss_pred             CCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHH
Confidence            12233334444444554431   0  11111222233445543       7999999999999999 7999999999888


Q ss_pred             HHHHHhCCcEEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCc
Q 012882          181 VSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSE  231 (454)
Q Consensus       181 l~~L~~~G~vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~  231 (454)
                      +.......++|++.||.                   +.+++--+++-++.+
T Consensus       530 i~~~~~~rTvI~IvH~l-------------------~ll~~~DkI~~l~nG  561 (591)
T KOG0057|consen  530 IMDVMSGRTVIMIVHRL-------------------DLLKDFDKIIVLDNG  561 (591)
T ss_pred             HHHhcCCCeEEEEEecc-------------------hhHhcCCEEEEEECC
Confidence            88855444599999984                   566666677777665

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.34  E-value=1.1e-12  Score=154.45  Aligned_cols=156  Identities=13%  Similarity=0.125  Sum_probs=99.3

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCc-ccCceEEEechhHH-HH----HHHHHHHhhh--hhcccchhhhh-hccc
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGI-VKHRQRFHFHEAML-KI----NEHMHRLWKN--QVAEKSLRSSI-SGWI  111 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~-~~~k~rv~f~~f~~-~~----~~~i~~~~~~--~~~~~t~~e~l-~~~~  111 (454)
                      .+++-++|+||||||||||+++|+|...+. ....+.|.+++... ..    ++.+.++.|+  ..+.+|+.|++ +...
T Consensus        85 ~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~  164 (1394)
T TIGR00956        85 KPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAAR  164 (1394)
T ss_pred             ECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHH
Confidence            456779999999999999999999986321 12345666654321 11    1225566655  45678999987 3221


Q ss_pred             cCC------CCCh-H----HHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHH
Q 012882          112 TNL------PFDS-K----VMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVF  172 (454)
Q Consensus       112 ~~~------~~~~-~----~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~  172 (454)
                      ...      .... +    +.+.++..+++.+..+. ..-....+.+++++       ++|+.+|+|||+|||+ +||..
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t-~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~  243 (1394)
T TIGR00956       165 CKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNT-KVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSA  243 (1394)
T ss_pred             hCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCc-eeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHH
Confidence            111      0111 1    12445566666431110 00011234455554       5888999999999999 99999


Q ss_pred             HHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          173 AIVALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       173 ~a~~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      ++..+.++|+.+.+. |. +|+++|+.
T Consensus       244 ~~~~i~~~L~~la~~~g~tvii~~Hq~  270 (1394)
T TIGR00956       244 TALEFIRALKTSANILDTTPLVAIYQC  270 (1394)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEecCC
Confidence            999999999999864 77 77777774

>PLN03232 ABC transporter C family member; Provisional

Probab=99.34  E-value=2.4e-12  Score=152.96  Aligned_cols=155  Identities=16%  Similarity=0.203  Sum_probs=104.7

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITN  113 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~  113 (454)
                      ..++++-++|+|++|||||||+++|.+..++ ..|...+...+.    ..++++.++.++|+ ..-..|+++|+--.  .
T Consensus      1258 ~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p-~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~--~ 1334 (1495)
T PLN03232       1258 FVSPSEKVGVVGRTGAGKSSMLNALFRIVEL-EKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPF--S 1334 (1495)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCcC-CCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCC--C
Confidence            3456788999999999999999999999875 245444443332    23567888888887 22345888888321  1


Q ss_pred             CCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882          114 LPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI  180 (454)
Q Consensus       114 ~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l  180 (454)
                       ..+.+...+.+...++.+.-     +.+..+..-...+++++       |||+++|+||+|||+| .+|..+...+.+.
T Consensus      1335 -~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~ 1413 (1495)
T PLN03232       1335 -EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRT 1413 (1495)
T ss_pred             -CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH
Confidence             23444444555544443211     11111111122345554       7889999999999999 8999999999999


Q ss_pred             HHHHHhCCcEEEEecCC
Q 012882          181 VSRLLSTGTVLVATSNR  197 (454)
Q Consensus       181 l~~L~~~G~vlV~ThN~  197 (454)
                      +++.++..++|++||..
T Consensus      1414 L~~~~~~~TvI~IAHRl 1430 (1495)
T PLN03232       1414 IREEFKSCTMLVIAHRL 1430 (1495)
T ss_pred             HHHHcCCCEEEEEeCCH
Confidence            99887654599999873

>PLN03140 ABC transporter G family member; Provisional

Probab=99.33  E-value=1.6e-12  Score=153.13  Aligned_cols=156  Identities=13%  Similarity=0.139  Sum_probs=99.9

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH-H--HHHHHHHHhhh--hhcccchhhhh-hcc-ccC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML-K--INEHMHRLWKN--QVAEKSLRSSI-SGW-ITN  113 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~-~--~~~~i~~~~~~--~~~~~t~~e~l-~~~-~~~  113 (454)
                      ++++-++|+||||||||||+++|+|.+++...-.+.|.+++... .  .++.+.++.|+  ..+.+|+.|++ +.. ...
T Consensus       189 ~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~  268 (1470)
T PLN03140        189 KPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQG  268 (1470)
T ss_pred             eCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcC
Confidence            46677999999999999999999999864222245565544211 1  13456677665  55678999987 321 111


Q ss_pred             CC--C----C--h-H---------------------------HHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh------
Q 012882          114 LP--F----D--S-K---------------------------VMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ------  151 (454)
Q Consensus       114 ~~--~----~--~-~---------------------------~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~------  151 (454)
                      ..  .    .  . +                           ..+.++..+++....+. ..-....+.+++++      
T Consensus       269 ~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t-~vg~~~~rglSGGerkRVsi  347 (1470)
T PLN03140        269 VGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDT-IVGDEMIRGISGGQKKRVTT  347 (1470)
T ss_pred             CCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCc-eeCCccccCCCcccceeeee
Confidence            00  0    0  0 0                           12334444444221100 00012334566665      


Q ss_pred             -hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh-CCc-EEEEecCC
Q 012882          152 -HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS-TGT-VLVATSNR  197 (454)
Q Consensus       152 -rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~-~G~-vlV~ThN~  197 (454)
                       ++|+.+|++||+|||+ +||..++..+.++|+.+.+ .|. +|+++|+.
T Consensus       348 a~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp  397 (1470)
T PLN03140        348 GEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQP  397 (1470)
T ss_pred             hhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCC
Confidence             6889999999999999 9999999999999999976 466 77777764

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.32  E-value=4.4e-12  Score=127.56  Aligned_cols=150  Identities=15%  Similarity=0.124  Sum_probs=95.5

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---------HHHHHHHHHHHhhh----hhcccchhh
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---------MLKINEHMHRLWKN----QVAEKSLRS  105 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---------~~~~~~~i~~~~~~----~~~~~t~~e  105 (454)
                      ....++.++|+|.+|||||||-.+|...+++    .+++.|.+.         |.-++.++..+.|+    +.+.+|+.+
T Consensus       309 ~L~~gqTlGlVGESGSGKsTlG~allrL~~s----~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~q  384 (534)
T COG4172         309 TLRRGQTLGLVGESGSGKSTLGLALLRLIPS----QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQ  384 (534)
T ss_pred             EecCCCeEEEEecCCCCcchHHHHHHhhcCc----CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHH
Confidence            3456788999999999999999999999873    255655432         33344444444444    233344444


Q ss_pred             hhhccccCCCC--C----hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCH
Q 012882          106 SISGWITNLPF--D----SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDV  171 (454)
Q Consensus       106 ~l~~~~~~~~~--~----~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~  171 (454)
                      .+--.+.-...  +    ..++...+.+.++..     +...+.-.++++++       ||++.+|++++||||| .||.
T Consensus       385 II~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp-----~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~  459 (534)
T COG4172         385 IIEEGLRVHEPKLSAAERDQRVIEALEEVGLDP-----ATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDR  459 (534)
T ss_pred             HhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCCh-----hHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhH
Confidence            44222211110  1    022233333444422     11222333444444       6888999999999999 7999


Q ss_pred             HHHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          172 FAIVALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       172 ~~a~~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      .-+..+.+||+.|.++ |. -+++||+.
T Consensus       460 SVQaQvv~LLr~LQ~k~~LsYLFISHDL  487 (534)
T COG4172         460 SVQAQVLDLLRDLQQKHGLSYLFISHDL  487 (534)
T ss_pred             HHHHHHHHHHHHHHHHhCCeEEEEeccH
Confidence            9999999999999864 77 99999984

>PLN03130 ABC transporter C family member; Provisional

Probab=99.31  E-value=3.5e-12  Score=152.09  Aligned_cols=155  Identities=14%  Similarity=0.201  Sum_probs=104.6

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITN  113 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~  113 (454)
                      ..++++-++|+|++|||||||+++|.+..++. .|...+...+.    ..++++.++.++|+ ..-..|+++|+--..  
T Consensus      1261 ~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~-~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-- 1337 (1622)
T PLN03130       1261 EISPSEKVGIVGRTGAGKSSMLNALFRIVELE-RGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-- 1337 (1622)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC-CceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC--
Confidence            44677889999999999999999999998752 44444433221    24677888888887 233458888883211  


Q ss_pred             CCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882          114 LPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI  180 (454)
Q Consensus       114 ~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l  180 (454)
                       ..+.+...+.+...++.+.-     +.+..+.+-...+++++       |||+++|+||+|||+| .+|..+...+.+.
T Consensus      1338 -~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~ 1416 (1622)
T PLN03130       1338 -EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKT 1416 (1622)
T ss_pred             -CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHH
Confidence             23444455555554443211     11111111122345444       7899999999999999 8999999999999


Q ss_pred             HHHHHhCCcEEEEecCC
Q 012882          181 VSRLLSTGTVLVATSNR  197 (454)
Q Consensus       181 l~~L~~~G~vlV~ThN~  197 (454)
                      |++.++..++|+++|..
T Consensus      1417 I~~~~~~~TvI~IAHRL 1433 (1622)
T PLN03130       1417 IREEFKSCTMLIIAHRL 1433 (1622)
T ss_pred             HHHHCCCCEEEEEeCCh
Confidence            99987644599999863

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.31  E-value=7e-12  Score=110.78  Aligned_cols=151  Identities=16%  Similarity=0.125  Sum_probs=97.8

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH----HHHHHHHHHhhh--hhcccchhhhhhccccCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML----KINEHMHRLWKN--QVAEKSLRSSISGWITNL  114 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~----~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~  114 (454)
                      ..+.-+-|+||+|||||||+.-+.|.+.+...-.+++..++...    .-++.++.+.|.  +.+.+++.+|+...+...
T Consensus        26 a~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~  105 (213)
T COG4136          26 AKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPAT  105 (213)
T ss_pred             cCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEecCcc
Confidence            45677999999999999999999998876544445554444321    123345555555  567788888873332222


Q ss_pred             CCChHH---HHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH-H
Q 012882          115 PFDSKV---MEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV-S  182 (454)
Q Consensus       115 ~~~~~~---~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll-~  182 (454)
                      .+...+   +...+...++.+..      ..-...+++++       |+|+.+|+.|+||||. .+|.+-+..+++.+ .
T Consensus       106 ~KG~aRr~~a~aAL~~~gL~g~f------~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs  179 (213)
T COG4136         106 LKGNARRNAANAALERSGLDGAF------HQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFS  179 (213)
T ss_pred             cccHHHHhhHHHHHHHhccchhh------hcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHH
Confidence            222222   22333444443321      11122334443       6888999999999999 79999998888754 6


Q ss_pred             HHHhCCc-EEEEecCC
Q 012882          183 RLLSTGT-VLVATSNR  197 (454)
Q Consensus       183 ~L~~~G~-vlV~ThN~  197 (454)
                      ++.+.|. ++.+||+.
T Consensus       180 ~~r~agiPtv~VTHD~  195 (213)
T COG4136         180 EVRAAGIPTVQVTHDL  195 (213)
T ss_pred             HHHhcCCCeEEEeccc
Confidence            6677799 99999985

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.31  E-value=3.7e-12  Score=121.07  Aligned_cols=41  Identities=22%  Similarity=0.130  Sum_probs=37.3

Q ss_pred             CCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          157 GASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       157 ~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      +|++||||||+ ++|+.....+.+++.++.++|. +|++||+.
T Consensus       151 ~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~  193 (213)
T cd03279         151 RLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVE  193 (213)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECch
Confidence            67999999999 8999999999999999987676 99999985

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>PRK08116 hypothetical protein; Validated

Probab=99.31  E-value=1.6e-11  Score=120.89  Aligned_cols=141  Identities=18%  Similarity=0.259  Sum_probs=93.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChHHH
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVM  121 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~~~  121 (454)
                      .+.|++|+|++|+|||+|+.+++..+.   ..+..+.|..+.. +...+.......                        
T Consensus       113 ~~~gl~l~G~~GtGKThLa~aia~~l~---~~~~~v~~~~~~~-ll~~i~~~~~~~------------------------  164 (268)
T PRK08116        113 ENVGLLLWGSVGTGKTYLAACIANELI---EKGVPVIFVNFPQ-LLNRIKSTYKSS------------------------  164 (268)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEHHH-HHHHHHHHHhcc------------------------
Confidence            357899999999999999999998763   1234454443321 111111100000                        


Q ss_pred             HHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEecCCCc
Q 012882          122 EWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGTVLVATSNRAP  199 (454)
Q Consensus       122 e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P  199 (454)
                                    .......+.+.+        .+++||||||+.  .........|..+|......|..+|+|+|.+|
T Consensus       165 --------------~~~~~~~~~~~l--------~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~  222 (268)
T PRK08116        165 --------------GKEDENEIIRSL--------VNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSL  222 (268)
T ss_pred             --------------ccccHHHHHHHh--------cCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCH
Confidence                          000012233333        578999999997  34445567788999998888888889999999


Q ss_pred             cchhcCCchhhhhHHHHHHHHhhccccccCCchhhhhhc
Q 012882          200 WDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLI  238 (454)
Q Consensus       200 ~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~DyR~~~  238 (454)
                      ++|...-     -...+++|.+.|.+|.+.++ |||...
T Consensus       223 ~eL~~~~-----~~ri~sRl~e~~~~v~~~g~-d~R~~~  255 (268)
T PRK08116        223 EELKNQY-----GKRIYDRILEMCTPVENEGK-SYRKEI  255 (268)
T ss_pred             HHHHHHH-----hHHHHHHHHHcCEEEEeeCc-ChhHHH
Confidence            9975421     14567888889999999886 999854

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=1.6e-11  Score=115.65  Aligned_cols=153  Identities=15%  Similarity=0.100  Sum_probs=89.2

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-------HHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-------LKINEHMHRLWKN--QVAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-------~~~~~~i~~~~~~--~~~~~t~~e~l~~~  110 (454)
                      ...+.-..|+||||||||||+.+|+|.-.-. ..++++.|...-       ...+..+...+|.  ..+..++.+++...
T Consensus        27 v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~-Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a  105 (251)
T COG0396          27 VKEGEVHAIMGPNGSGKSTLAYTIMGHPKYE-VTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAA  105 (251)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCce-EecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHH
Confidence            3456778999999999999999999964311 234566665421       1122222222332  12223333333211


Q ss_pred             ccCC-------CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHH
Q 012882          111 ITNL-------PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       111 ~~~~-------~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~  175 (454)
                      ....       .......++.++.+++....-.    ..+-..++++.       +.++.+|++.+||||. ++|+.+-.
T Consensus       106 ~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~----R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk  181 (251)
T COG0396         106 MNARRGARGILPEFIKELKEKAELLGLDEEFLE----RYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALK  181 (251)
T ss_pred             HHhhhccccccHHHHHHHHHHHHHcCCCHHHhh----cccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHH
Confidence            1110       0111333444444444321000    00011122221       4667899999999999 99999999


Q ss_pred             HHHHHHHHHHhCCc-EEEEecCC
Q 012882          176 ALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       176 ~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      .+.+.++.+.+.|. ++++||+.
T Consensus       182 ~V~~~i~~lr~~~~~~liITHy~  204 (251)
T COG0396         182 IVAEGINALREEGRGVLIITHYQ  204 (251)
T ss_pred             HHHHHHHHHhcCCCeEEEEecHH
Confidence            99999999999988 99999974

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.30  E-value=9.8e-12  Score=112.33  Aligned_cols=55  Identities=22%  Similarity=0.216  Sum_probs=46.6

Q ss_pred             hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh-CCc-EEEEecCCCccchhcCC
Q 012882          152 HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS-TGT-VLVATSNRAPWDLNQDG  206 (454)
Q Consensus       152 rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~-~G~-vlV~ThN~~P~dLy~~~  206 (454)
                      |.|+..|+++++|||+ ++|+.-+..|..+++.|.. .|. ++|+||+.....|..++
T Consensus       164 RnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~r  221 (258)
T COG4107         164 RNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADR  221 (258)
T ss_pred             HHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhc
Confidence            5667999999999999 8999999999999999975 477 99999997666655554

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.28  E-value=6.1e-12  Score=149.75  Aligned_cols=170  Identities=15%  Similarity=0.195  Sum_probs=112.6

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITN  113 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~  113 (454)
                      ..++++-++|+|++|||||||+++|.+..++ ..|...+...+.    ..++++.++.++|+ ..-..|+++|+-..  .
T Consensus      1308 ~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~-~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~--~ 1384 (1522)
T TIGR00957      1308 TIHGGEKVGIVGRTGAGKSSLTLGLFRINES-AEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF--S 1384 (1522)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCccC-CCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcc--c
Confidence            3457788999999999999999999999874 244444433221    24678888999888 23345888888311  1


Q ss_pred             CCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882          114 LPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI  180 (454)
Q Consensus       114 ~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l  180 (454)
                       ..+.+...+.+...++...-     +.+..+..-...+++++       |||+++|+||+||||| .+|..+...+.+.
T Consensus      1385 -~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~ 1463 (1522)
T TIGR00957      1385 -QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQST 1463 (1522)
T ss_pred             -CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH
Confidence             23344444455554443210     11111111112344444       7899999999999999 8999999999999


Q ss_pred             HHHHHhCCcEEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCc
Q 012882          181 VSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSE  231 (454)
Q Consensus       181 l~~L~~~G~vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~  231 (454)
                      |++.++..++|++||+                   ++.+...-+|+.|+.|
T Consensus      1464 l~~~~~~~TvI~IAHR-------------------l~ti~~~DrIlVld~G 1495 (1522)
T TIGR00957      1464 IRTQFEDCTVLTIAHR-------------------LNTIMDYTRVIVLDKG 1495 (1522)
T ss_pred             HHHHcCCCEEEEEecC-------------------HHHHHhCCEEEEEECC
Confidence            9988765459999986                   3445555666666654

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PLN03073 ABC transporter F family; Provisional

Probab=99.28  E-value=2.6e-11  Score=134.33  Aligned_cols=53  Identities=21%  Similarity=0.231  Sum_probs=44.2

Q ss_pred             HHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 012882          144 ADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSNRA  198 (454)
Q Consensus       144 a~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~  198 (454)
                      ...+++++       ++|+.+|+||+||||+ +||+.....|.++|..+  .+.+||+||++.
T Consensus       342 ~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~  402 (718)
T PLN03073        342 TKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHARE  402 (718)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHH
Confidence            34556554       6889999999999999 89999999999999886  345999999964

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.28  E-value=8e-12  Score=148.44  Aligned_cols=153  Identities=14%  Similarity=0.154  Sum_probs=103.5

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITN  113 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~  113 (454)
                      ..++++-++|+|++|||||||+++|++..+  ..|...+...+.    ...+++.+.+++|+ ..-..|+++|+-.  ..
T Consensus      1241 ~I~~GekvaIvGrSGsGKSTLl~lL~rl~~--~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp--~~ 1316 (1490)
T TIGR01271      1241 SVEGGQRVGLLGRTGSGKSTLLSALLRLLS--TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDP--YE 1316 (1490)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCc--cc
Confidence            345778899999999999999999999885  244444333221    24577888888887 2334588888821  11


Q ss_pred             CCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882          114 LPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI  180 (454)
Q Consensus       114 ~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l  180 (454)
                       ..+.+.....+...++...-     +.+..+..-...+++++       |||+++|+|||||||| .+|..+...+.+.
T Consensus      1317 -~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~ 1395 (1490)
T TIGR01271      1317 -QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKT 1395 (1490)
T ss_pred             -CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence             23445555566655553311     11111111112344444       7899999999999999 8999999999999


Q ss_pred             HHHHHhCCcEEEEecC
Q 012882          181 VSRLLSTGTVLVATSN  196 (454)
Q Consensus       181 l~~L~~~G~vlV~ThN  196 (454)
                      |+..++..+||++||+
T Consensus      1396 L~~~~~~~TvI~IaHR 1411 (1490)
T TIGR01271      1396 LKQSFSNCTVILSEHR 1411 (1490)
T ss_pred             HHHHcCCCEEEEEecC
Confidence            9988765459999986

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PTZ00243 ABC transporter; Provisional

Probab=99.28  E-value=9.5e-12  Score=148.08  Aligned_cols=154  Identities=15%  Similarity=0.142  Sum_probs=103.4

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITN  113 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~  113 (454)
                      ..++++-++|+|++|||||||+++|.+..++. .|...+...+.    ..++++.+++++|+ ..-..|+++|+-.  ..
T Consensus      1332 ~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~-~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp--~~ 1408 (1560)
T PTZ00243       1332 RIAPREKVGIVGRTGSGKSTLLLTFMRMVEVC-GGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDP--FL 1408 (1560)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCc--cc
Confidence            34577889999999999999999999998742 44444433221    24677888888888 2334588888832  11


Q ss_pred             CCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccC-CcEEEeeCCC-CCCHHHHHHHHH
Q 012882          114 LPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRG-ASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       114 ~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~-p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                       ..+.+.+...+...++...-     +.+..+..-...+++++       |||+++ |+||||||+| .+|..+...+.+
T Consensus      1409 -~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~ 1487 (1560)
T PTZ00243       1409 -EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQA 1487 (1560)
T ss_pred             -CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHH
Confidence             23344455555555543311     01111111112345554       788885 8999999999 899999999999


Q ss_pred             HHHHHHhCCcEEEEecC
Q 012882          180 IVSRLLSTGTVLVATSN  196 (454)
Q Consensus       180 ll~~L~~~G~vlV~ThN  196 (454)
                      .|...++..++|++||+
T Consensus      1488 ~L~~~~~~~TvI~IAHR 1504 (1560)
T PTZ00243       1488 TVMSAFSAYTVITIAHR 1504 (1560)
T ss_pred             HHHHHCCCCEEEEEecc
Confidence            99988765559999987

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.27  E-value=8.5e-12  Score=140.57  Aligned_cols=155  Identities=14%  Similarity=0.149  Sum_probs=98.7

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITN  113 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~  113 (454)
                      ..++++-+.|+||+||||||++.+|.+...| ..|...+..++.    ..+++..++.+.|+ ..-..|+.||+......
T Consensus       375 ~i~~G~~valVG~SGsGKST~i~LL~RfydP-~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~d  453 (1228)
T KOG0055|consen  375 KIPSGQTVALVGPSGSGKSTLIQLLARFYDP-TSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPD  453 (1228)
T ss_pred             EeCCCCEEEEECCCCCCHHHHHHHHHHhcCC-CCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCc
Confidence            3467888999999999999999999998875 355555544332    23566777877777 44556788887333211


Q ss_pred             CCCChHHHHHHHHHHhhhh---HH--hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882          114 LPFDSKVMEWVAAEEKYKQ---EV--QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI  180 (454)
Q Consensus       114 ~~~~~~~~e~ll~~~~l~~---~~--~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l  180 (454)
                        ......++.+.....+.   ..  +.+-...+-.-.|++++       |||+++|+||+|||+| .||..+...+.+.
T Consensus       454 --at~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~A  531 (1228)
T KOG0055|consen  454 --ATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEA  531 (1228)
T ss_pred             --ccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHH
Confidence              11222222221111110   00  00000000011244444       7889999999999999 8999999999999


Q ss_pred             HHHHHhCCcEEEEecC
Q 012882          181 VSRLLSTGTVLVATSN  196 (454)
Q Consensus       181 l~~L~~~G~vlV~ThN  196 (454)
                      |+......+.||++|.
T Consensus       532 Ld~~~~grTTivVaHR  547 (1228)
T KOG0055|consen  532 LDKASKGRTTIVVAHR  547 (1228)
T ss_pred             HHHhhcCCeEEEEeee
Confidence            9888654459999986

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=7.3e-12  Score=129.19  Aligned_cols=46  Identities=24%  Similarity=0.229  Sum_probs=39.8

Q ss_pred             hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecCCCc
Q 012882          152 HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSNRAP  199 (454)
Q Consensus       152 rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P  199 (454)
                      |||..+|+||+||||| .||+.+..+|...|....  .++||++|++..
T Consensus       211 RAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~F  257 (582)
T KOG0062|consen  211 RALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNF  257 (582)
T ss_pred             HHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHH
Confidence            6888999999999999 799999999988777753  469999999853

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=6.3e-11  Score=117.83  Aligned_cols=146  Identities=24%  Similarity=0.315  Sum_probs=101.3

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS  118 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~  118 (454)
                      +..+||||.||||+|+|||+|.++.++.+..   .-.++...++.+   +-++.-..                       
T Consensus       181 GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A---tFIrvvgSElVq---KYiGEGaR-----------------------  231 (406)
T COG1222         181 GIDPPKGVLLYGPPGTGKTLLAKAVANQTDA---TFIRVVGSELVQ---KYIGEGAR-----------------------  231 (406)
T ss_pred             CCCCCCceEeeCCCCCcHHHHHHHHHhccCc---eEEEeccHHHHH---HHhccchH-----------------------
Confidence            5678999999999999999999999998753   234555544432   22221100                       


Q ss_pred             HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-----------CCCHHHHHHHHHHHHHH--H
Q 012882          119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-----------TVDVFAIVALSGIVSRL--L  185 (454)
Q Consensus       119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-----------~lD~~~a~~L~~ll~~L--~  185 (454)
                                       .-.-+..+|++         +.|.|+++||..           +-|..-+..+.+||.+|  |
T Consensus       232 -----------------lVRelF~lAre---------kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGF  285 (406)
T COG1222         232 -----------------LVRELFELARE---------KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGF  285 (406)
T ss_pred             -----------------HHHHHHHHHhh---------cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCC
Confidence                             00112445665         679999999995           34556667777777777  2


Q ss_pred             h-CC-cEEEEecCCC----ccchhcCCchhhhhHH------HHHHHHhhccccccCCchhhhhhcc
Q 012882          186 S-TG-TVLVATSNRA----PWDLNQDGMQREIFQK------LVAKLEKHCEIIPIGSEVDYRRLIA  239 (454)
Q Consensus       186 ~-~G-~vlV~ThN~~----P~dLy~~~l~r~~F~~------~I~~L~~~~~vv~l~~~~DyR~~~~  239 (454)
                      + +| +-+|+..||+    |+-|.+++++|..-.|      -..+|+-|+.-+.+..++||.....
T Consensus       286 D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~  351 (406)
T COG1222         286 DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLAR  351 (406)
T ss_pred             CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHH
Confidence            2 23 4344445875    8889999999965443      4678999999999999999987643

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.24  E-value=1.2e-11  Score=116.26  Aligned_cols=42  Identities=14%  Similarity=0.298  Sum_probs=36.8

Q ss_pred             cCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 012882          156 RGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       156 ~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      .+|++|+||||+ ++|+.....+.++|.++.+...||++||+.
T Consensus       134 ~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~  176 (197)
T cd03278         134 RPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRK  176 (197)
T ss_pred             CCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCH
Confidence            567999999999 899999999999999997643499999984

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.24  E-value=5.3e-12  Score=120.08  Aligned_cols=40  Identities=13%  Similarity=0.260  Sum_probs=35.8

Q ss_pred             CCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecC
Q 012882          157 GASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSN  196 (454)
Q Consensus       157 ~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN  196 (454)
                      .|++|+||||+ ++|+.....+.+++.++.+.+.++++||+
T Consensus       149 ~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~  189 (212)
T cd03274         149 PTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLR  189 (212)
T ss_pred             CCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECc
Confidence            57999999999 89999999999999998665668888876

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=99.24  E-value=1.7e-11  Score=113.47  Aligned_cols=132  Identities=19%  Similarity=0.311  Sum_probs=69.1

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChHH
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV  120 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~~  120 (454)
                      ..++|++|+|++|+|||+|+.++...+-   ..+..+.|-... ++...+.....                         
T Consensus        45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~---~~g~~v~f~~~~-~L~~~l~~~~~-------------------------   95 (178)
T PF01695_consen   45 ENGENLILYGPPGTGKTHLAVAIANEAI---RKGYSVLFITAS-DLLDELKQSRS-------------------------   95 (178)
T ss_dssp             SC--EEEEEESTTSSHHHHHHHHHHHHH---HTT--EEEEEHH-HHHHHHHCCHC-------------------------
T ss_pred             ccCeEEEEEhhHhHHHHHHHHHHHHHhc---cCCcceeEeecC-ceecccccccc-------------------------
Confidence            3579999999999999999999987552   234455554332 22222221100                         


Q ss_pred             HHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 012882          121 MEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGTVLVATSNRA  198 (454)
Q Consensus       121 ~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~  198 (454)
                                      ........+.+        .+++||+|||+.  ..+......|.+++....+++ .+|+|||..
T Consensus        96 ----------------~~~~~~~~~~l--------~~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~  150 (178)
T PF01695_consen   96 ----------------DGSYEELLKRL--------KRVDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS  150 (178)
T ss_dssp             ----------------CTTHCHHHHHH--------HTSSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred             ----------------ccchhhhcCcc--------ccccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence                            00112233333        479999999999  367778888999999988754 677799999


Q ss_pred             ccchhcCCchhhhhHHHHHHHHhhcccc
Q 012882          199 PWDLNQDGMQREIFQKLVAKLEKHCEII  226 (454)
Q Consensus       199 P~dLy~~~l~r~~F~~~I~~L~~~~~vv  226 (454)
                      |++|..---++..-.+.+++|.++|++|
T Consensus       151 ~~~l~~~~~d~~~a~aildRl~~~~~~i  178 (178)
T PF01695_consen  151 PSELEEVLGDRALAEAILDRLLHHCHVI  178 (178)
T ss_dssp             HHHHHT----------------------
T ss_pred             hhhHhhccccccccccccccccccccCC
Confidence            9999886666777778899999999986

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PLN03232 ABC transporter C family member; Provisional

Probab=99.23  E-value=1.1e-11  Score=147.38  Aligned_cols=146  Identities=15%  Similarity=0.130  Sum_probs=97.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh-hhcccchhhhhhccccCCCCCh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN-QVAEKSLRSSISGWITNLPFDS  118 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~~~~~  118 (454)
                      .++++-+.|+|++|||||||+++|.|..++. .|+. +       .++..+.++.|+ ...+.|+++|+....   +.+.
T Consensus       640 i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~-~G~i-~-------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~---~~~~  707 (1495)
T PLN03232        640 IPVGSLVAIVGGTGEGKTSLISAMLGELSHA-ETSS-V-------VIRGSVAYVPQVSWIFNATVRENILFGS---DFES  707 (1495)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCCccc-CCCE-E-------EecCcEEEEcCccccccccHHHHhhcCC---ccCH
Confidence            3456779999999999999999999999752 3322 2       123456777776 234568999984322   3466


Q ss_pred             HHHHHHHHHHhhhhHHh-----hcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH-HHHHHHH
Q 012882          119 KVMEWVAAEEKYKQEVQ-----MKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL-SGIVSRL  184 (454)
Q Consensus       119 ~~~e~ll~~~~l~~~~~-----~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L-~~ll~~L  184 (454)
                      +..++++...++.....     .+..+..-...+++++       ||++++|+||+||||+ .+|..++..+ .+++..+
T Consensus       708 e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~  787 (1495)
T PLN03232        708 ERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE  787 (1495)
T ss_pred             HHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh
Confidence            66777776666543211     0111122223456665       7999999999999999 8999987755 5566665


Q ss_pred             HhCCcEEEEecCC
Q 012882          185 LSTGTVLVATSNR  197 (454)
Q Consensus       185 ~~~G~vlV~ThN~  197 (454)
                      .+..++|++||+.
T Consensus       788 l~~kT~IlvTH~~  800 (1495)
T PLN03232        788 LKGKTRVLVTNQL  800 (1495)
T ss_pred             hcCCEEEEEECCh
Confidence            4433499999984

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.22  E-value=2.2e-11  Score=144.74  Aligned_cols=145  Identities=18%  Similarity=0.212  Sum_probs=91.8

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhh-hcccchhhhhhccccCCCCChH
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQ-VAEKSLRSSISGWITNLPFDSK  119 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~~~~~~~~  119 (454)
                      ++++-++|+||||||||||+++|+|..++ ..|  .+.+++       .+.++.|+. ....|+.+|+....   .++..
T Consensus       450 ~~G~~~~I~G~~GsGKSTLl~~l~G~~~~-~~G--~i~~~g-------~iayv~Q~~~l~~~Ti~eNI~~g~---~~~~~  516 (1490)
T TIGR01271       450 EKGQLLAVAGSTGSGKSSLLMMIMGELEP-SEG--KIKHSG-------RISFSPQTSWIMPGTIKDNIIFGL---SYDEY  516 (1490)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCc--eEEECC-------EEEEEeCCCccCCccHHHHHHhcc---ccchH
Confidence            45667999999999999999999999874 233  444432       356666651 12348888873221   12333


Q ss_pred             HHHHHHHHHhhhhHHhh---cc--hHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH-HHHHHH
Q 012882          120 VMEWVAAEEKYKQEVQM---KN--ILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG-IVSRLL  185 (454)
Q Consensus       120 ~~e~ll~~~~l~~~~~~---~~--~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~-ll~~L~  185 (454)
                      ..+.++...++......   .+  .+..-...+++++       ||++.+|++|+||||+ ++|...+..+.+ ++..+.
T Consensus       517 ~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~  596 (1490)
T TIGR01271       517 RYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM  596 (1490)
T ss_pred             HHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence            33444443333221100   00  0111123455554       7889999999999999 899999999987 466665


Q ss_pred             hCCcEEEEecCCC
Q 012882          186 STGTVLVATSNRA  198 (454)
Q Consensus       186 ~~G~vlV~ThN~~  198 (454)
                      +..++|++||+..
T Consensus       597 ~~~tvilvtH~~~  609 (1490)
T TIGR01271       597 SNKTRILVTSKLE  609 (1490)
T ss_pred             cCCeEEEEeCChH
Confidence            4334999999853

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PRK12377 putative replication protein; Provisional

Probab=99.22  E-value=8.3e-11  Score=114.31  Aligned_cols=138  Identities=13%  Similarity=0.127  Sum_probs=93.5

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChHHHH
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVME  122 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~~~e  122 (454)
                      ..+++|+|++|+|||+|+.+++..+.   ..+..+.|.... ++...+......                          
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~~-~l~~~l~~~~~~--------------------------  150 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTVP-DVMSRLHESYDN--------------------------  150 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEHH-HHHHHHHHHHhc--------------------------
Confidence            47899999999999999999998764   122344443322 222222111000                          


Q ss_pred             HHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEecCCCcc
Q 012882          123 WVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGTVLVATSNRAPW  200 (454)
Q Consensus       123 ~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~  200 (454)
                                    ......+.+.+        .+++|||+||+.  .........|..++......+..+|+|||..++
T Consensus       151 --------------~~~~~~~l~~l--------~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~  208 (248)
T PRK12377        151 --------------GQSGEKFLQEL--------CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHE  208 (248)
T ss_pred             --------------cchHHHHHHHh--------cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHH
Confidence                          00011223333        579999999996  455567889999999988877888889999999


Q ss_pred             chhcCCchhhhhHHHHHHHHhh-ccccccCCchhhhhhc
Q 012882          201 DLNQDGMQREIFQKLVAKLEKH-CEIIPIGSEVDYRRLI  238 (454)
Q Consensus       201 dLy~~~l~r~~F~~~I~~L~~~-~~vv~l~~~~DyR~~~  238 (454)
                      +|...-     -.+.+++|.+. |.+|.++++ |||+..
T Consensus       209 ~l~~~~-----~~ri~dRl~~~~~~~v~~~g~-s~R~~~  241 (248)
T PRK12377        209 AMSTLL-----GERVMDRMTMNGGRWVNFNWE-SWRPNV  241 (248)
T ss_pred             HHHHHh-----hHHHHHHHhhCCCeEEEeCCc-Cccccc
Confidence            986521     13478889765 788999997 999853

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.22  E-value=1e-10  Score=105.43  Aligned_cols=153  Identities=13%  Similarity=0.083  Sum_probs=88.9

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-----------HH-HHHHHHHHhhhh--hcccchh
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-----------LK-INEHMHRLWKNQ--VAEKSLR  104 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-----------~~-~~~~i~~~~~~~--~~~~t~~  104 (454)
                      ....+.++.|.||+|+||||||+++|+...+ ..++..+.-.+-.           .. -++.++++.|-+  .+..+..
T Consensus        33 sV~aGECvvL~G~SG~GKStllr~LYaNY~~-d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aL  111 (235)
T COG4778          33 SVNAGECVVLHGPSGSGKSTLLRSLYANYLP-DEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSAL  111 (235)
T ss_pred             EecCccEEEeeCCCCCcHHHHHHHHHhccCC-CCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchH
Confidence            3467899999999999999999999998764 2455544322211           11 234566665531  1111211


Q ss_pred             hhhhccccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHH-HHhhhhh-------hhhccCCcEEEeeCCC-CCCH
Q 012882          105 SSISGWITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVA-DKFLVDQ-------HADQRGASILCFDEIQ-TVDV  171 (454)
Q Consensus       105 e~l~~~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va-~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~  171 (454)
                      +.+..-+.....+.    ..+..++..+.+..      .+-.++ ..++++.       |.++.+.+||+||||| .||.
T Consensus       112 dVvaePll~~gv~~~~a~~~a~~Ll~rLnlpe------rLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa  185 (235)
T COG4778         112 DVVAEPLLARGVPREVARAKAADLLTRLNLPE------RLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDA  185 (235)
T ss_pred             HHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCH------HHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccc
Confidence            21111110011111    12222222222211      111111 0112221       5777899999999999 8999


Q ss_pred             HHHHHHHHHHHHHHhCCc-EEEEecCCC
Q 012882          172 FAIVALSGIVSRLLSTGT-VLVATSNRA  198 (454)
Q Consensus       172 ~~a~~L~~ll~~L~~~G~-vlV~ThN~~  198 (454)
                      .++..+.+++.+-+.+|. ++=+-|+..
T Consensus       186 ~Nr~vVveli~e~Ka~GaAlvGIFHDee  213 (235)
T COG4778         186 TNRAVVVELIREAKARGAALVGIFHDEE  213 (235)
T ss_pred             cchHHHHHHHHHHHhcCceEEEeeccHH
Confidence            999999999999999999 777778753

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=2e-10  Score=116.36  Aligned_cols=144  Identities=16%  Similarity=0.175  Sum_probs=83.8

Q ss_pred             CCCCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcc---cCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccC
Q 012882           37 PTAPPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV---KHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITN  113 (454)
Q Consensus        37 ~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~---~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~  113 (454)
                      ...+..-.-++|+||||.|||||+++|.|.+.|.-   ....|.+..-|-+.....+       ....|..+++. ..+.
T Consensus       607 dFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L-------~~Eetp~EyLq-r~FN  678 (807)
T KOG0066|consen  607 DFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEAL-------NGEETPVEYLQ-RKFN  678 (807)
T ss_pred             cccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhh-------ccccCHHHHHH-HhcC
Confidence            34555667799999999999999999999886531   1223444333322211111       11112223321 1111


Q ss_pred             CCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh---hh----hccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHH
Q 012882          114 LPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ---HA----DQRGASILCFDEIQ-TVDVFAIVALSGIVSRLL  185 (454)
Q Consensus       114 ~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~---rA----L~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~  185 (454)
                        .+-..++..++.+++......-     -.+.+++++   .|    -+..|+|||||||| .||+.+...|.+.|+++ 
T Consensus       679 --lpyq~ARK~LG~fGL~sHAHTi-----kikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney-  750 (807)
T KOG0066|consen  679 --LPYQEARKQLGTFGLASHAHTI-----KIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY-  750 (807)
T ss_pred             --CChHHHHHHhhhhhhhhccceE-----eeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc-
Confidence              1223445556666653311000     011112221   00    13689999999999 89999999999998887 


Q ss_pred             hCCcEEEEecCC
Q 012882          186 STGTVLVATSNR  197 (454)
Q Consensus       186 ~~G~vlV~ThN~  197 (454)
                       .|.|||+||+-
T Consensus       751 -~GgVi~VsHDe  761 (807)
T KOG0066|consen  751 -NGGVIMVSHDE  761 (807)
T ss_pred             -cCcEEEEeccc
Confidence             67899999983

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.20  E-value=3.4e-11  Score=143.51  Aligned_cols=146  Identities=17%  Similarity=0.172  Sum_probs=93.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh-hhcccchhhhhhccccCCCCCh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN-QVAEKSLRSSISGWITNLPFDS  118 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~~~~~  118 (454)
                      .++++-++|+||||||||||+++|.|.+++ ..  +.+.+++       .+++++|+ .....|+.+|+....   ..+.
T Consensus       661 i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~-~~--G~i~~~g-------~i~yv~Q~~~l~~~Ti~eNI~~g~---~~~~  727 (1522)
T TIGR00957       661 IPEGALVAVVGQVGCGKSSLLSALLAEMDK-VE--GHVHMKG-------SVAYVPQQAWIQNDSLRENILFGK---ALNE  727 (1522)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCcc-CC--cEEEECC-------EEEEEcCCccccCCcHHHHhhcCC---ccCH
Confidence            345677999999999999999999999874 23  3444432       35666665 223468888874221   1334


Q ss_pred             HHHHHHHHHHhhhhHHhh-----cchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHH-
Q 012882          119 KVMEWVAAEEKYKQEVQM-----KNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRL-  184 (454)
Q Consensus       119 ~~~e~ll~~~~l~~~~~~-----~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L-  184 (454)
                      +..+.++....+......     ...+..-...+++++       ||++.+|++++||||+ ++|...+..+.+.+... 
T Consensus       728 ~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~  807 (1522)
T TIGR00957       728 KYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPE  807 (1522)
T ss_pred             HHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh
Confidence            444444444333221110     001112223455554       7889999999999999 89999999988877543 


Q ss_pred             -HhCCc-EEEEecCCC
Q 012882          185 -LSTGT-VLVATSNRA  198 (454)
Q Consensus       185 -~~~G~-vlV~ThN~~  198 (454)
                       ..+|+ +|++||+..
T Consensus       808 ~~~~~~tvIlvTH~~~  823 (1522)
T TIGR00957       808 GVLKNKTRILVTHGIS  823 (1522)
T ss_pred             hhhcCCEEEEEeCChh
Confidence             12344 999999853

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PLN03130 ABC transporter C family member; Provisional

Probab=99.20  E-value=2.4e-11  Score=144.97  Aligned_cols=146  Identities=16%  Similarity=0.149  Sum_probs=99.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh-hhcccchhhhhhccccCCCCCh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN-QVAEKSLRSSISGWITNLPFDS  118 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~~~~~  118 (454)
                      .++++-++|+||+|||||||+++|.|..++. . ++.+.       ++..+.++.|+ ...+.|+++|+...   .+++.
T Consensus       640 i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~-~-GG~I~-------l~~~Iayv~Q~p~LfngTIreNI~fg---~~~d~  707 (1622)
T PLN03130        640 VPVGSLVAIVGSTGEGKTSLISAMLGELPPR-S-DASVV-------IRGTVAYVPQVSWIFNATVRDNILFG---SPFDP  707 (1622)
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHHHhhccC-C-CceEE-------EcCeEEEEcCccccCCCCHHHHHhCC---CcccH
Confidence            3456679999999999999999999999742 3 13443       23457777777 23456899998432   23456


Q ss_pred             HHHHHHHHHHhhhhHHh-----hcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH-HHHHHHH
Q 012882          119 KVMEWVAAEEKYKQEVQ-----MKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL-SGIVSRL  184 (454)
Q Consensus       119 ~~~e~ll~~~~l~~~~~-----~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L-~~ll~~L  184 (454)
                      +..++++...++.....     ....+..-...+++++       ||++++|+||+||||+ .+|...+..+ .+++..+
T Consensus       708 e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~  787 (1622)
T PLN03130        708 ERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDE  787 (1622)
T ss_pred             HHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHH
Confidence            67777777776644211     1111222223456655       7999999999999999 8999887654 5667665


Q ss_pred             HhCCcEEEEecCC
Q 012882          185 LSTGTVLVATSNR  197 (454)
Q Consensus       185 ~~~G~vlV~ThN~  197 (454)
                      .+..++|++||+.
T Consensus       788 l~~kTvIlVTH~l  800 (1622)
T PLN03130        788 LRGKTRVLVTNQL  800 (1622)
T ss_pred             hcCCEEEEEECCH
Confidence            4433499999984

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.19  E-value=2.4e-11  Score=118.41  Aligned_cols=40  Identities=15%  Similarity=0.377  Sum_probs=35.9

Q ss_pred             cCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecC
Q 012882          156 RGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSN  196 (454)
Q Consensus       156 ~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN  196 (454)
                      .+|++|++|||+ ++|+.....+.++|.++.+ |. +|++||+
T Consensus       187 ~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~-g~~ii~iSH~  228 (251)
T cd03273         187 KPAPMYILDEVDAALDLSHTQNIGRMIKTHFK-GSQFIVVSLK  228 (251)
T ss_pred             cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECC
Confidence            578999999999 8999999999999999864 66 8888887

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.19  E-value=9.8e-12  Score=120.18  Aligned_cols=41  Identities=27%  Similarity=0.422  Sum_probs=34.1

Q ss_pred             cCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 012882          156 RGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       156 ~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      .+|++|+||||+ ++|+..+..+.+.|.++.+ +.++|+||+.
T Consensus       179 ~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~  220 (243)
T cd03272         179 DPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFR  220 (243)
T ss_pred             CCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecC
Confidence            468999999999 8999999999999999865 6755555554

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.19  E-value=3.5e-11  Score=121.17  Aligned_cols=153  Identities=18%  Similarity=0.129  Sum_probs=96.1

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCc--ccCceEEEechhHH--HHHHHHHHHhhhhhcccchhhhhhccccCC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGI--VKHRQRFHFHEAML--KINEHMHRLWKNQVAEKSLRSSISGWITNL  114 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~--~~~k~rv~f~~f~~--~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~  114 (454)
                      ...++.-+.|+|++|||||..+..+.+.+|.+  ....++++|++--.  .-.+.+..++..      -..++||.+...
T Consensus        32 ~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~------~I~MIFQEPMtS  105 (534)
T COG4172          32 DIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGN------KIGMIFQEPMTS  105 (534)
T ss_pred             eecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhccc------ceEEEecccccc
Confidence            45678889999999999999999999998742  23446777765321  111222222211      012334443322


Q ss_pred             CCCh-HHHHHHHHHHhhhhHH-------------------hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC
Q 012882          115 PFDS-KVMEWVAAEEKYKQEV-------------------QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ  167 (454)
Q Consensus       115 ~~~~-~~~e~ll~~~~l~~~~-------------------~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~  167 (454)
                      ..+. +.-+.+.+.+.++...                   .....+...-.++++++       .||+.+|++||-||||
T Consensus       106 LNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPT  185 (534)
T COG4172         106 LNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPT  185 (534)
T ss_pred             cCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCc
Confidence            2221 2222333333332210                   01122333444566665       5899999999999999


Q ss_pred             -CCCHHHHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          168 -TVDVFAIVALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       168 -~lD~~~a~~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                       .||+.-+..+.++|+.|.++ |. ++++|||.
T Consensus       186 TALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL  218 (534)
T COG4172         186 TALDVTVQAQILDLLKELQAELGMAILFITHDL  218 (534)
T ss_pred             chhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH
Confidence             89999999999999999865 77 99999995

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.18  E-value=4.5e-11  Score=112.66  Aligned_cols=41  Identities=17%  Similarity=0.188  Sum_probs=34.9

Q ss_pred             CCcEEEeeCCC-CCCHHHHHHH-HHHHHHHHhCCc-EEEEecCC
Q 012882          157 GASILCFDEIQ-TVDVFAIVAL-SGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       157 ~p~lL~LDEp~-~lD~~~a~~L-~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      +|++|++|||+ ++|+.++..+ ..++..+.+.|. +|++||+.
T Consensus       105 ~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~  148 (199)
T cd03283         105 EPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDL  148 (199)
T ss_pred             CCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcH
Confidence            89999999999 8999988765 557888877777 88999984

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PTZ00243 ABC transporter; Provisional

Probab=99.18  E-value=5.8e-11  Score=141.50  Aligned_cols=144  Identities=15%  Similarity=0.129  Sum_probs=87.0

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh-hhcccchhhhhhccccCCCCChH
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN-QVAEKSLRSSISGWITNLPFDSK  119 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~~~~~~  119 (454)
                      ++++-++|+||||||||||+++|.|.+++. .|  .+..+       ..+++++|+ .....|+.+++...   ...+..
T Consensus       684 ~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~-~G--~i~~~-------~~i~yv~Q~~~l~~~Tv~enI~~~---~~~~~~  750 (1560)
T PTZ00243        684 PRGKLTVVLGATGSGKSTLLQSLLSQFEIS-EG--RVWAE-------RSIAYVPQQAWIMNATVRGNILFF---DEEDAA  750 (1560)
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCCCCC-Cc--EEEEC-------CeEEEEeCCCccCCCcHHHHHHcC---ChhhHH
Confidence            456679999999999999999999998742 33  44332       345666665 12245777777321   112222


Q ss_pred             HHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH-HHHHHH
Q 012882          120 VMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG-IVSRLL  185 (454)
Q Consensus       120 ~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~-ll~~L~  185 (454)
                      ..+..+...++....     +....+......|++++       ||++.+|+||+||||+ ++|+..+..+.+ ++....
T Consensus       751 ~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~  830 (1560)
T PTZ00243        751 RLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL  830 (1560)
T ss_pred             HHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhh
Confidence            333333332222110     00011111123345554       7899999999999999 899988776654 444433


Q ss_pred             hCCc-EEEEecCCC
Q 012882          186 STGT-VLVATSNRA  198 (454)
Q Consensus       186 ~~G~-vlV~ThN~~  198 (454)
                       .|+ +|++||+..
T Consensus       831 -~~~TvIlvTH~~~  843 (1560)
T PTZ00243        831 -AGKTRVLATHQVH  843 (1560)
T ss_pred             -CCCEEEEEeCCHH
Confidence             455 999999853

>PRK06835 DNA replication protein DnaC; Validated

Probab=99.18  E-value=1.6e-10  Score=116.81  Aligned_cols=139  Identities=19%  Similarity=0.285  Sum_probs=95.2

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChHHHH
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVME  122 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~~~e  122 (454)
                      .++++|+|++|+|||+|+.+++..+-   ..+..|.|.... ++...+.......                         
T Consensus       183 ~~~Lll~G~~GtGKThLa~aIa~~l~---~~g~~V~y~t~~-~l~~~l~~~~~~~-------------------------  233 (329)
T PRK06835        183 NENLLFYGNTGTGKTFLSNCIAKELL---DRGKSVIYRTAD-ELIEILREIRFNN-------------------------  233 (329)
T ss_pred             CCcEEEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEEHH-HHHHHHHHHHhcc-------------------------
Confidence            48999999999999999999998763   233456554332 2222221110000                         


Q ss_pred             HHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEecCCCcc
Q 012882          123 WVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGTVLVATSNRAPW  200 (454)
Q Consensus       123 ~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~  200 (454)
                                   ..+ .....+.+        .+++|||+|++.  ..+......|..+|......+..+|+|+|.+|+
T Consensus       234 -------------~~~-~~~~~~~l--------~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~  291 (329)
T PRK06835        234 -------------DKE-LEEVYDLL--------INCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLE  291 (329)
T ss_pred             -------------chh-HHHHHHHh--------ccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHH
Confidence                         000 01112222        579999999998  477778889999999998888888889999999


Q ss_pred             chhcCCchhhhhHHHHHHHHhhccccccCCchhhhhhc
Q 012882          201 DLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLI  238 (454)
Q Consensus       201 dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~DyR~~~  238 (454)
                      +|...-     =.+..++|...|.++.+.|. |+|...
T Consensus       292 el~~~~-----~eri~SRL~~~~~~i~~~G~-d~R~~~  323 (329)
T PRK06835        292 ELLKTY-----SERISSRLLGNFTLLKFYGE-DIRIKK  323 (329)
T ss_pred             HHHHHH-----hHHHHHHHHcCCEEEEecCc-ChhhHH
Confidence            985421     02457889999999999765 999754

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.17  E-value=7.5e-11  Score=133.11  Aligned_cols=155  Identities=14%  Similarity=0.112  Sum_probs=104.4

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITN  113 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~  113 (454)
                      ..++++-+.|+||+||||||++.+|-....| ..|+..+...+.    ...+++.++.+.|+ ..-+.|++||+..+...
T Consensus      1012 ~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp-~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~ 1090 (1228)
T KOG0055|consen 1012 SIRAGQTVALVGPSGSGKSTVISLLERFYDP-DAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEE 1090 (1228)
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHHHhcCC-CCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCC
Confidence            3467889999999999999999999777654 345555544332    24678888888887 34566888988444212


Q ss_pred             CCCChHHHHHHHHHHhhhh---H--HhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882          114 LPFDSKVMEWVAAEEKYKQ---E--VQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI  180 (454)
Q Consensus       114 ~~~~~~~~e~ll~~~~l~~---~--~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l  180 (454)
                        .++..+.+.+.....+.   .  .+.+-.+.+-..+|++++       ||++++|+||+|||-| .||..+.+.+.+.
T Consensus      1091 --vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeA 1168 (1228)
T KOG0055|consen 1091 --VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEA 1168 (1228)
T ss_pred             --CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHH
Confidence              34433333333222222   1  111112222233455554       7899999999999999 7999999999999


Q ss_pred             HHHHHhCCcEEEEecC
Q 012882          181 VSRLLSTGTVLVATSN  196 (454)
Q Consensus       181 l~~L~~~G~vlV~ThN  196 (454)
                      |++.....+.||++|-
T Consensus      1169 Ld~a~~gRT~IvIAHR 1184 (1228)
T KOG0055|consen 1169 LDRAMEGRTTIVIAHR 1184 (1228)
T ss_pred             HHHhhcCCcEEEEecc
Confidence            9998765458999985

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.14  E-value=5.8e-11  Score=112.27  Aligned_cols=46  Identities=24%  Similarity=0.270  Sum_probs=40.4

Q ss_pred             hhhccCCcEEEeeCCC-CCCHHHHH-HHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          152 HADQRGASILCFDEIQ-TVDVFAIV-ALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       152 rAL~~~p~lL~LDEp~-~lD~~~a~-~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      ++++.+|++|+||||+ ++|+..+. .+.+++.++.+. |. +|++||+.
T Consensus       134 ~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~  183 (204)
T cd03240         134 ETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDE  183 (204)
T ss_pred             HHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecH
Confidence            4566899999999999 89999999 999999999875 65 89999974

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.14  E-value=1.1e-10  Score=112.22  Aligned_cols=46  Identities=22%  Similarity=0.203  Sum_probs=41.4

Q ss_pred             hhhccCC--cEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          152 HADQRGA--SILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       152 rAL~~~p--~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      ++|+.+|  ++|+||||+ ++|+..+..+.++|.++.++|. +|++||+.
T Consensus       150 ral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~  199 (226)
T cd03270         150 TQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDE  199 (226)
T ss_pred             HHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCH
Confidence            5777887  599999999 8999999999999999987777 99999985

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=99.11  E-value=7.2e-10  Score=108.33  Aligned_cols=140  Identities=19%  Similarity=0.219  Sum_probs=101.6

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEech---hHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE---AMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS  118 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~---f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~  118 (454)
                      .+++++|+||+|+|||+|+-+|+..+.   ..+.++.|..   ++..+......                          
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~---~~g~sv~f~~~~el~~~Lk~~~~~--------------------------  154 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELL---KAGISVLFITAPDLLSKLKAAFDE--------------------------  154 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHH---HcCCeEEEEEHHHHHHHHHHHHhc--------------------------
Confidence            578999999999999999999988773   2345665543   33322221111                          


Q ss_pred             HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEecC
Q 012882          119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGTVLVATSN  196 (454)
Q Consensus       119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~vlV~ThN  196 (454)
                                        ......+.+.+        .+++||||||..  ..+...+..+.++|......... ++|||
T Consensus       155 ------------------~~~~~~l~~~l--------~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~-~~tsN  207 (254)
T COG1484         155 ------------------GRLEEKLLREL--------KKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSL-IITSN  207 (254)
T ss_pred             ------------------CchHHHHHHHh--------hcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhccc-eeecC
Confidence                              00112334434        579999999999  48888888888888888776556 99999


Q ss_pred             CCccchhcCCchhhhhHHHHHHHHhhccccccCCchhhhhhc
Q 012882          197 RAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLI  238 (454)
Q Consensus       197 ~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~DyR~~~  238 (454)
                      .++++|....-....-...+++|.++|+++.+.++ +||...
T Consensus       208 ~~~~~~~~~~~~~~~~e~~~dRi~~~~~~~~~~g~-s~rl~~  248 (254)
T COG1484         208 LSFGEWDELFGDDALTEALLDRILHHSHVIVIKGE-SYRLNV  248 (254)
T ss_pred             CChHHHHhhccCchhHHHHHHHHHhcceeeEecch-Hhhhhc
Confidence            99999887554444556788999999999998776 899743

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.11  E-value=5.4e-11  Score=104.46  Aligned_cols=113  Identities=13%  Similarity=0.143  Sum_probs=65.0

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh--hhcccchhhhhhcccc
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN--QVAEKSLRSSISGWIT  112 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~  112 (454)
                      .++.-++|+|+||||||||+++|+|..++   ..+.+.+++.      .......+.++.+.  .....++.++      
T Consensus         9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~~---~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~------   79 (137)
T PF00005_consen    9 KPGEIVAIVGPNGSGKSTLLKALAGLLPP---DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN------   79 (137)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHTTSSHE---SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH------
T ss_pred             cCCCEEEEEccCCCccccceeeecccccc---cccccccccccccccccccccccccccccccccccccccccc------
Confidence            35678999999999999999999999863   3456655432      12233344444433  2223333333      


Q ss_pred             CCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC
Q 012882          113 NLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ  167 (454)
Q Consensus       113 ~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~  167 (454)
                         ......+.++..+++....  ...+..-...+++++       +||+.+|++|+||||+
T Consensus        80 ---~~~~~~~~~l~~l~~~~~~--~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt  136 (137)
T PF00005_consen   80 ---ESDERIEEVLKKLGLEDLL--DRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPT  136 (137)
T ss_dssp             ---HHHHHHHHHHHHTTHGGGT--GSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTT
T ss_pred             ---ccccccccccccccccccc--ccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence               1123455555555553311  011111113333333       6788999999999997

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.09  E-value=4e-10  Score=106.06  Aligned_cols=41  Identities=29%  Similarity=0.408  Sum_probs=35.5

Q ss_pred             cCCcEEEeeCCC-CCCHHHHHHHH-HHHHHHHhCCc-EEEEecC
Q 012882          156 RGASILCFDEIQ-TVDVFAIVALS-GIVSRLLSTGT-VLVATSN  196 (454)
Q Consensus       156 ~~p~lL~LDEp~-~lD~~~a~~L~-~ll~~L~~~G~-vlV~ThN  196 (454)
                      .+|+++++|||+ ++|+.....+. .+++.+.+.|. ++++||+
T Consensus       107 ~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~  150 (200)
T cd03280         107 DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHY  150 (200)
T ss_pred             CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH
Confidence            689999999999 89999988885 57888877777 8888886

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.09  E-value=6.4e-10  Score=101.43  Aligned_cols=152  Identities=13%  Similarity=0.118  Sum_probs=87.9

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HHHHHHHHHHhhhhhcc----cchhhhhh
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LKINEHMHRLWKNQVAE----KSLRSSIS  108 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~~~~~i~~~~~~~~~~----~t~~e~l~  108 (454)
                      ....++-++++|.||||||||.++++|.++|. .+  ++.|++..      ..-.+.+..+.|.....    +.+...+ 
T Consensus        35 tL~~~QTlaiIG~NGSGKSTLakMlaGmi~PT-sG--~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiL-  110 (267)
T COG4167          35 TLREGQTLAIIGENGSGKSTLAKMLAGMIEPT-SG--EILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQIL-  110 (267)
T ss_pred             EecCCcEEEEEccCCCcHhHHHHHHhcccCCC-Cc--eEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHh-
Confidence            34567889999999999999999999999863 44  44444321      11223444444432211    1111111 


Q ss_pred             ccccC--CCCC-hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhh-------hhhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882          109 GWITN--LPFD-SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVD-------QHADQRGASILCFDEIQ-TVDVFAIVAL  177 (454)
Q Consensus       109 ~~~~~--~~~~-~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~-------~rAL~~~p~lL~LDEp~-~lD~~~a~~L  177 (454)
                      ..+..  ..++ +.+.+.+...+++-+..+.  -.......++.+       .|||+-+|+|+|.||.- +||.+-+..+
T Consensus       111 d~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pd--han~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl  188 (267)
T COG4167         111 DFPLRLNTDLEPEQRRKQIFETLRMVGLLPD--HANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQL  188 (267)
T ss_pred             cchhhhcccCChHHHHHHHHHHHHHhccCcc--ccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHH
Confidence            11111  1112 2344444444433221110  000001111111       16788999999999999 7999999999


Q ss_pred             HHHHHHHHhC-Cc-EEEEecC
Q 012882          178 SGIVSRLLST-GT-VLVATSN  196 (454)
Q Consensus       178 ~~ll~~L~~~-G~-vlV~ThN  196 (454)
                      .+++-+|.++ |+ .|.++.+
T Consensus       189 ~NL~LeLQek~GiSyiYV~Qh  209 (267)
T COG4167         189 INLMLELQEKQGISYIYVTQH  209 (267)
T ss_pred             HHHHHHHHHHhCceEEEEech
Confidence            9999999875 87 7777766

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.09  E-value=5.7e-10  Score=108.51  Aligned_cols=45  Identities=11%  Similarity=0.132  Sum_probs=39.2

Q ss_pred             hhhcc----CCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecC
Q 012882          152 HADQR----GASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSN  196 (454)
Q Consensus       152 rAL~~----~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN  196 (454)
                      ++++.    .|++++||||+ ++|+..+..+.++|.++.+.|. +|++||+
T Consensus       168 ~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~  218 (247)
T cd03275         168 LLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLK  218 (247)
T ss_pred             HHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECC
Confidence            45554    48999999999 8999999999999999987676 9999997

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=3.3e-10  Score=107.83  Aligned_cols=122  Identities=29%  Similarity=0.321  Sum_probs=83.6

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS  118 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~  118 (454)
                      +..+|+|+.+|||+|||||||.++.++...   ..-.|+...+|.+.   .++.-+.                       
T Consensus       185 gidpprgvllygppg~gktml~kava~~t~---a~firvvgsefvqk---ylgegpr-----------------------  235 (408)
T KOG0727|consen  185 GIDPPRGVLLYGPPGTGKTMLAKAVANHTT---AAFIRVVGSEFVQK---YLGEGPR-----------------------  235 (408)
T ss_pred             CCCCCcceEEeCCCCCcHHHHHHHHhhccc---hheeeeccHHHHHH---HhccCcH-----------------------
Confidence            467899999999999999999999998774   34467777776542   2221110                       


Q ss_pred             HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-----------CCCHHHHHHHHHHHHHH--H
Q 012882          119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-----------TVDVFAIVALSGIVSRL--L  185 (454)
Q Consensus       119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-----------~lD~~~a~~L~~ll~~L--~  185 (454)
                                       +-.-+.++|++         ..|.|+++||..           +-|..-+.+|.++++.+  +
T Consensus       236 -----------------mvrdvfrlake---------napsiifideidaiatkrfdaqtgadrevqril~ellnqmdgf  289 (408)
T KOG0727|consen  236 -----------------MVRDVFRLAKE---------NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGF  289 (408)
T ss_pred             -----------------HHHHHHHHHhc---------cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCc
Confidence                             00112445665         459999999973           56777778888888777  3


Q ss_pred             hC--Cc-EEEEecCCC----ccchhcCCchhhhhHHHH
Q 012882          186 ST--GT-VLVATSNRA----PWDLNQDGMQREIFQKLV  216 (454)
Q Consensus       186 ~~--G~-vlV~ThN~~----P~dLy~~~l~r~~F~~~I  216 (454)
                      ++  ++ ||++| ||.    |+-|.++++.|+.-.|.-
T Consensus       290 dq~~nvkvimat-nradtldpallrpgrldrkiefplp  326 (408)
T KOG0727|consen  290 DQTTNVKVIMAT-NRADTLDPALLRPGRLDRKIEFPLP  326 (408)
T ss_pred             CcccceEEEEec-CcccccCHhhcCCccccccccCCCC
Confidence            33  34 55555 654    888888888887655543

>PRK07952 DNA replication protein DnaC; Validated

Probab=99.07  E-value=1.3e-09  Score=105.75  Aligned_cols=138  Identities=15%  Similarity=0.178  Sum_probs=90.1

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChHHHH
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVME  122 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~~~e  122 (454)
                      ..|++|+|++|+|||+|+.+++..+.   ..+..+.+-... ++...+......                          
T Consensus        99 ~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it~~-~l~~~l~~~~~~--------------------------  148 (244)
T PRK07952         99 IASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIITVA-DIMSAMKDTFSN--------------------------  148 (244)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEHH-HHHHHHHHHHhh--------------------------
Confidence            36999999999999999999998763   223444443221 111111110000                          


Q ss_pred             HHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEecCCCcc
Q 012882          123 WVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGTVLVATSNRAPW  200 (454)
Q Consensus       123 ~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~  200 (454)
                                   .......+.+.+        .+++|||+||+.  ..+......|..++......+..+|+|||..++
T Consensus       149 -------------~~~~~~~~l~~l--------~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~  207 (244)
T PRK07952        149 -------------SETSEEQLLNDL--------SNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNME  207 (244)
T ss_pred             -------------ccccHHHHHHHh--------ccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHH
Confidence                         000012233333        479999999998  334445668888998877767788889999999


Q ss_pred             chhcCCchhhhhHHHHHHHH-hhccccccCCchhhhhh
Q 012882          201 DLNQDGMQREIFQKLVAKLE-KHCEIIPIGSEVDYRRL  237 (454)
Q Consensus       201 dLy~~~l~r~~F~~~I~~L~-~~~~vv~l~~~~DyR~~  237 (454)
                      +|...--     -..+++|. +++.++.++++ +||..
T Consensus       208 ~l~~~~g-----~ri~sRl~~~~~~~i~f~~~-s~R~~  239 (244)
T PRK07952        208 EMTKLLG-----ERVMDRMRLGNSLWVIFNWD-SYRSR  239 (244)
T ss_pred             HHHHHhC-----hHHHHHHHHCCceEEEeeCC-ccccc
Confidence            9875221     24578885 78899999976 89973

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.07  E-value=3.3e-10  Score=118.70  Aligned_cols=152  Identities=18%  Similarity=0.186  Sum_probs=103.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccC-----ceEEEechhHHHHHHHHHHHhhhh-----hcccchhhhhhc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKH-----RQRFHFHEAMLKINEHMHRLWKNQ-----VAEKSLRSSISG  109 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~-----k~rv~f~~f~~~~~~~i~~~~~~~-----~~~~t~~e~l~~  109 (454)
                      ...+.-++|.|-.|+|+|-|+.+|+|..+. ..+     +..+++......+...+.+++.++     ...+++.+|+..
T Consensus       282 vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~-~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l  360 (500)
T COG1129         282 VRAGEILGIAGLVGAGRTELARALFGARPA-SSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITL  360 (500)
T ss_pred             EeCCcEEEEeccccCCHHHHHHHHhCCCcC-CCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheeh
Confidence            356778999999999999999999996542 122     334455555556777788887653     344677777622


Q ss_pred             c-ccCC----CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHH
Q 012882          110 W-ITNL----PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVF  172 (454)
Q Consensus       110 ~-~~~~----~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~  172 (454)
                      . +...    ..+.    ..++.....++++...     ....+..|+++.       +.|..+|+||+||||| +.|+.
T Consensus       361 ~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s-----~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVG  435 (500)
T COG1129         361 ASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS-----PEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVG  435 (500)
T ss_pred             HhhhhhccccccChHHHHHHHHHHHHhcCcccCC-----ccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccc
Confidence            1 1111    1222    2333444444443211     123344555553       6778999999999999 99999


Q ss_pred             HHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          173 AIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       173 ~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      +...+++++++|.++|+ ||++||+.
T Consensus       436 AK~eIy~li~~lA~~G~ail~iSSEl  461 (500)
T COG1129         436 AKAEIYRLIRELAAEGKAILMISSEL  461 (500)
T ss_pred             hHHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            99999999999999999 99999885

>PRK06921 hypothetical protein; Provisional

Probab=99.05  E-value=2.2e-09  Score=105.66  Aligned_cols=134  Identities=15%  Similarity=0.221  Sum_probs=83.7

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChHHH
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVM  121 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~~~  121 (454)
                      ...+++|+|++|+|||+|+.+|+..+..  ..+..+.|-.... .   +..+....                        
T Consensus       116 ~~~~l~l~G~~G~GKThLa~aia~~l~~--~~g~~v~y~~~~~-l---~~~l~~~~------------------------  165 (266)
T PRK06921        116 RKNSIALLGQPGSGKTHLLTAAANELMR--KKGVPVLYFPFVE-G---FGDLKDDF------------------------  165 (266)
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHhh--hcCceEEEEEHHH-H---HHHHHHHH------------------------
Confidence            4688999999999999999999987641  2134444433211 1   11111000                        


Q ss_pred             HHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCCC-------CCHHHHHHHHHHHHHHHhCCcEEEEe
Q 012882          122 EWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT-------VDVFAIVALSGIVSRLLSTGTVLVAT  194 (454)
Q Consensus       122 e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~~-------lD~~~a~~L~~ll~~L~~~G~vlV~T  194 (454)
                                      +......+.+        .+++|||+||.+.       ........|..++......+..+|+|
T Consensus       166 ----------------~~~~~~~~~~--------~~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIit  221 (266)
T PRK06921        166 ----------------DLLEAKLNRM--------KKVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILIS  221 (266)
T ss_pred             ----------------HHHHHHHHHh--------cCCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEE
Confidence                            0001112222        5799999999941       33445567889999888877877889


Q ss_pred             cCCCccchhcCCchhhhhHHHHHHHHhhcc--ccccCCchhhhh
Q 012882          195 SNRAPWDLNQDGMQREIFQKLVAKLEKHCE--IIPIGSEVDYRR  236 (454)
Q Consensus       195 hN~~P~dLy~~~l~r~~F~~~I~~L~~~~~--vv~l~~~~DyR~  236 (454)
                      +|.+|++|..-  ..    ...++|.++|.  ++.+++. .||.
T Consensus       222 sn~~~~el~~~--~~----~l~sRi~~r~~~~~i~~~g~-s~r~  258 (266)
T PRK06921        222 SELTIDELLDI--DE----ALGSRIVEMCKDYLVIIKGD-SFEL  258 (266)
T ss_pred             CCCCHHHHhhh--hh----HHHHHHHHhccCeEEEecCc-cccc
Confidence            99999998863  22    33455555554  7777664 4554

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.04  E-value=1e-09  Score=114.16  Aligned_cols=56  Identities=16%  Similarity=0.137  Sum_probs=42.0

Q ss_pred             HHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 012882          141 PAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       141 ~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      ....+.++++.       ++|..+|+||+||||+ +||+.+..+|.+.|..+-. +.++|++|..
T Consensus       216 ~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~-~~lVi~sh~Q  279 (614)
T KOG0927|consen  216 DKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR-IILVIVSHSQ  279 (614)
T ss_pred             HHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC-ceEEEEecch
Confidence            33444555554       6889999999999999 8999999999988887633 2455566643

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.03  E-value=1.1e-09  Score=103.11  Aligned_cols=44  Identities=11%  Similarity=0.298  Sum_probs=37.0

Q ss_pred             ccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC--C-c-EEEEecCCC
Q 012882          155 QRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST--G-T-VLVATSNRA  198 (454)
Q Consensus       155 ~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~--G-~-vlV~ThN~~  198 (454)
                      +.+|++|+||||+ ++|+..+..+.++|.++...  | . ++++||+..
T Consensus       129 ~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~  177 (198)
T cd03276         129 VMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDIS  177 (198)
T ss_pred             ccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc
Confidence            4899999999999 89999999999999998653  3 3 777778753

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.02  E-value=7.4e-10  Score=118.33  Aligned_cols=150  Identities=13%  Similarity=0.093  Sum_probs=94.9

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhh-hcccchhhhhhccccCCCCC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQ-VAEKSLRSSISGWITNLPFD  117 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~~~~~~  117 (454)
                      ..+++.-++|.|++|||||||+++|+|.=|   -+.+++.+..     ...+-+++|.. .+..|.++.+..-.....++
T Consensus       415 ~v~~G~~llI~G~SG~GKTsLlRaiaGLWP---~g~G~I~~P~-----~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~  486 (604)
T COG4178         415 EVRPGERLLITGESGAGKTSLLRALAGLWP---WGSGRISMPA-----DSALLFLPQRPYLPQGTLREALCYPNAAPDFS  486 (604)
T ss_pred             eeCCCCEEEEECCCCCCHHHHHHHHhccCc---cCCCceecCC-----CCceEEecCCCCCCCccHHHHHhCCCCCCCCC
Confidence            446778899999999999999999999886   2445555441     11223445542 23335566553222222355


Q ss_pred             hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc
Q 012882          118 SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT  189 (454)
Q Consensus       118 ~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~  189 (454)
                      .....+++...++......-+......+.++.+.       |.|+++|+++||||-| .+|......+.+++++-. .++
T Consensus       487 d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~  565 (604)
T COG4178         487 DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDA  565 (604)
T ss_pred             hHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCC
Confidence            6666677777776542221111222444555443       6788999999999999 899999999988887633 356


Q ss_pred             EEEEecCC
Q 012882          190 VLVATSNR  197 (454)
Q Consensus       190 vlV~ThN~  197 (454)
                      .+|...++
T Consensus       566 tvISV~Hr  573 (604)
T COG4178         566 TVISVGHR  573 (604)
T ss_pred             EEEEeccc
Confidence            55555544

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.99  E-value=4.5e-09  Score=103.04  Aligned_cols=46  Identities=20%  Similarity=0.322  Sum_probs=41.0

Q ss_pred             hhhccC---CcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          152 HADQRG---ASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       152 rAL~~~---p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      ++|+.+   |++++||||+ ++|+.+...+.++|.++.+.|. +|++|||.
T Consensus       182 raL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~  232 (261)
T cd03271         182 KELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNL  232 (261)
T ss_pred             HHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            466675   7999999999 8999999999999999988777 99999984

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=98.98  E-value=2.7e-09  Score=100.56  Aligned_cols=43  Identities=23%  Similarity=0.299  Sum_probs=35.3

Q ss_pred             ccCCcEEEeeCCC-CCCHHHHHHH-HHHHHHHHhCCc-EEEEecCC
Q 012882          155 QRGASILCFDEIQ-TVDVFAIVAL-SGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       155 ~~~p~lL~LDEp~-~lD~~~a~~L-~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      +.+|+++++|||+ ++|+.....+ ..++..+.+.|. +|++||+.
T Consensus       106 ~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~  151 (202)
T cd03243         106 ATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFH  151 (202)
T ss_pred             ccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChH
Confidence            3689999999999 8999887765 567787777777 88899874

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=98.97  E-value=2.4e-09  Score=109.47  Aligned_cols=67  Identities=22%  Similarity=0.277  Sum_probs=52.7

Q ss_pred             chHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCCCccchhc
Q 012882          138 NILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNRAPWDLNQ  204 (454)
Q Consensus       138 ~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~P~dLy~  204 (454)
                      +.+.+-...++++.       .++.+++++.+||||+ -||+..+....+++++|.+.+. |||+-|+..--|+..
T Consensus       205 nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~ls  280 (591)
T COG1245         205 NVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLS  280 (591)
T ss_pred             hhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhh
Confidence            33444455556553       5778999999999999 6999999999999999998777 999999965444333

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=4.9e-09  Score=110.25  Aligned_cols=146  Identities=22%  Similarity=0.307  Sum_probs=98.2

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS  118 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~  118 (454)
                      +..+|.||+|+||+|||||.|.++.++....   .-..|.+.+.+..      |+...                     +
T Consensus       541 Gi~~PsGvLL~GPPGCGKTLlAKAVANEag~---NFisVKGPELlNk------YVGES---------------------E  590 (802)
T KOG0733|consen  541 GIDAPSGVLLCGPPGCGKTLLAKAVANEAGA---NFISVKGPELLNK------YVGES---------------------E  590 (802)
T ss_pred             CCCCCCceEEeCCCCccHHHHHHHHhhhccC---ceEeecCHHHHHH------HhhhH---------------------H
Confidence            4567999999999999999999999987642   1223333332211      11100                     0


Q ss_pred             HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCCC--------CCHHHHHHHHHHHHHHH----h
Q 012882          119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT--------VDVFAIVALSGIVSRLL----S  186 (454)
Q Consensus       119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~~--------lD~~~a~~L~~ll~~L~----~  186 (454)
                      ..                -..+.+-|+         ...|+|++|||+..        .-......+.+||.+|-    +
T Consensus       591 rA----------------VR~vFqRAR---------~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R  645 (802)
T KOG0733|consen  591 RA----------------VRQVFQRAR---------ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEER  645 (802)
T ss_pred             HH----------------HHHHHHHhh---------cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccc
Confidence            00                000111222         36799999999972        33456677888888873    3


Q ss_pred             CCcEEEEecCCC----ccchhcCCchhhhhHHH------HHHHHhhcc--ccccCCchhhhhhcc
Q 012882          187 TGTVLVATSNRA----PWDLNQDGMQREIFQKL------VAKLEKHCE--IIPIGSEVDYRRLIA  239 (454)
Q Consensus       187 ~G~vlV~ThN~~----P~dLy~~~l~r~~F~~~------I~~L~~~~~--vv~l~~~~DyR~~~~  239 (454)
                      +|+.+|+..|||    |+-|.++++.+-.|.++      +++|+...+  -..+++.+|+-....
T Consensus       646 ~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~  710 (802)
T KOG0733|consen  646 RGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIAR  710 (802)
T ss_pred             cceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhh
Confidence            477888888987    88899999999888764      567777666  777888889876543

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=98.94  E-value=5.6e-09  Score=98.77  Aligned_cols=43  Identities=26%  Similarity=0.315  Sum_probs=35.3

Q ss_pred             ccCCcEEEeeCCC-CCCHHHHHHH-HHHHHHHHhCCc-EEEEecCC
Q 012882          155 QRGASILCFDEIQ-TVDVFAIVAL-SGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       155 ~~~p~lL~LDEp~-~lD~~~a~~L-~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      +.+|+++++|||+ ++|+.+...+ ..+++.+.+.|. +|++||+.
T Consensus       106 ~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~  151 (204)
T cd03282         106 ADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFR  151 (204)
T ss_pred             cCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChH
Confidence            4789999999999 8999776554 567888887787 99999975

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK06893 DNA replication initiation factor; Validated

Probab=98.94  E-value=2.9e-09  Score=102.52  Aligned_cols=48  Identities=19%  Similarity=0.421  Sum_probs=40.5

Q ss_pred             cCCcEEEeeCCCC--CCHHHHHHHHHHHHHHHhCCc-EEEEecCCCccchh
Q 012882          156 RGASILCFDEIQT--VDVFAIVALSGIVSRLLSTGT-VLVATSNRAPWDLN  203 (454)
Q Consensus       156 ~~p~lL~LDEp~~--lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~P~dLy  203 (454)
                      .++++||+||++.  .+......|..++..+.+.|. ++|+|+|.+|.+|.
T Consensus        90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~  140 (229)
T PRK06893         90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALS  140 (229)
T ss_pred             ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHcc
Confidence            4689999999993  467777789999999988776 78899999999876

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=98.92  E-value=3.1e-09  Score=98.39  Aligned_cols=42  Identities=17%  Similarity=0.303  Sum_probs=37.8

Q ss_pred             cCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          156 RGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       156 ~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      .+|+++|+|||+ ++|+..+..+.+++.++.+.|. +|++||+.
T Consensus       115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~  158 (178)
T cd03239         115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKK  158 (178)
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence            589999999999 8999999999999999987766 88888873

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=98.92  E-value=1.1e-08  Score=93.12  Aligned_cols=41  Identities=27%  Similarity=0.263  Sum_probs=36.4

Q ss_pred             CCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          157 GASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       157 ~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      +|+++|+|||+ ++|+.+...+.+.+.++..+|. ++++||+.
T Consensus        99 ~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~  141 (162)
T cd03227          99 PRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP  141 (162)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence            79999999999 8999999999999988876666 88888874

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=98.91  E-value=2.1e-09  Score=109.84  Aligned_cols=137  Identities=15%  Similarity=0.165  Sum_probs=81.8

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCCCcccC---ceEEEechhHHHHHHHHHHHhhhhh--cccchhhhhhccccCCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKH---RQRFHFHEAMLKINEHMHRLWKNQV--AEKSLRSSISGWITNLPF  116 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~---k~rv~f~~f~~~~~~~i~~~~~~~~--~~~t~~e~l~~~~~~~~~  116 (454)
                      .+.-++++||||.||||+.++|+|.+.|. .+   +.++.+.             +|...  ...|+.+.+.........
T Consensus       366 ~gEvigilGpNgiGKTTFvk~LAG~ikPd-eg~~~~~~vSyK-------------PQyI~~~~~gtV~~~l~~~~~~~~~  431 (591)
T COG1245         366 DGEVIGILGPNGIGKTTFVKLLAGVIKPD-EGSEEDLKVSYK-------------PQYISPDYDGTVEDLLRSAIRSAFG  431 (591)
T ss_pred             cceEEEEECCCCcchHHHHHHHhccccCC-CCCCccceEeec-------------ceeecCCCCCcHHHHHHHhhhhhcc
Confidence            45669999999999999999999998753 22   2333321             22111  122333333221111100


Q ss_pred             ChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC-
Q 012882          117 DSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST-  187 (454)
Q Consensus       117 ~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~-  187 (454)
                      +.-...++...+.+      .+.+.+-...|+++.       .+|.++++|.+||||. -||+..+....+.++++.+. 
T Consensus       432 ~s~~~~ei~~pl~l------~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~  505 (591)
T COG1245         432 SSYFKTEIVKPLNL------EDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENN  505 (591)
T ss_pred             cchhHHhhcCccch------HHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhc
Confidence            11111222222222      222223333344332       4677999999999999 79999999999999999865 


Q ss_pred             Cc-EEEEecCCC
Q 012882          188 GT-VLVATSNRA  198 (454)
Q Consensus       188 G~-vlV~ThN~~  198 (454)
                      +. .+|+-|+..
T Consensus       506 ~kta~vVdHDi~  517 (591)
T COG1245         506 EKTALVVDHDIY  517 (591)
T ss_pred             CceEEEEeccee
Confidence            33 899999864

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=98.91  E-value=6.8e-09  Score=99.28  Aligned_cols=106  Identities=26%  Similarity=0.441  Sum_probs=71.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEe---chhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChHH
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHF---HEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV  120 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f---~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~~  120 (454)
                      ..+||+||+|+|||+|+.+++..+....+ +.++.+   .+|+..+...+..                            
T Consensus        35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~-~~~v~y~~~~~f~~~~~~~~~~----------------------------   85 (219)
T PF00308_consen   35 NPLFLYGPSGLGKTHLLQAIANEAQKQHP-GKRVVYLSAEEFIREFADALRD----------------------------   85 (219)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHHCT-TS-EEEEEHHHHHHHHHHHHHT----------------------------
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHHhccc-cccceeecHHHHHHHHHHHHHc----------------------------
Confidence            45999999999999999999886521011 233433   3444333222111                            


Q ss_pred             HHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 012882          121 MEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGTVLVATSNRA  198 (454)
Q Consensus       121 ~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~  198 (454)
                                       ..+..+...+        ...++||+|.++  .-.......+..++..+.++|+.+|+|++.+
T Consensus        86 -----------------~~~~~~~~~~--------~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~  140 (219)
T PF00308_consen   86 -----------------GEIEEFKDRL--------RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRP  140 (219)
T ss_dssp             -----------------TSHHHHHHHH--------CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-
T ss_pred             -----------------ccchhhhhhh--------hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCC
Confidence                             1122333333        579999999999  3445568899999999999999889999999


Q ss_pred             ccchh
Q 012882          199 PWDLN  203 (454)
Q Consensus       199 P~dLy  203 (454)
                      |.+|-
T Consensus       141 P~~l~  145 (219)
T PF00308_consen  141 PSELS  145 (219)
T ss_dssp             TTTTT
T ss_pred             Ccccc
Confidence            99875

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=98.91  E-value=5e-09  Score=107.76  Aligned_cols=153  Identities=13%  Similarity=0.139  Sum_probs=93.4

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhh-hccccC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSI-SGWITN  113 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l-~~~~~~  113 (454)
                      .+++|-+.|+||+|+||||+|++++..... ..|..++...+.    +..+++.|+.++|+ ..-+-|+.-|+ ++.   
T Consensus       561 v~pGktvAlVG~SGaGKSTimRlLfRffdv-~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak---  636 (790)
T KOG0056|consen  561 VQPGKTVALVGPSGAGKSTIMRLLFRFFDV-NSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAK---  636 (790)
T ss_pred             ecCCcEEEEECCCCCchhHHHHHHHHHhhc-cCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecC---
Confidence            467899999999999999999999887652 244455544432    34566677777775 11122222222 111   


Q ss_pred             CCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882          114 LPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI  180 (454)
Q Consensus       114 ~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l  180 (454)
                      ...+.+.+.+.+...++++.-     +......+-.-+++++.       |++++.|.+++|||.| .||-.+.+.+..-
T Consensus       637 ~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaa  716 (790)
T KOG0056|consen  637 PSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAA  716 (790)
T ss_pred             CCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHH
Confidence            112223333344444443310     00011111111223332       5777999999999999 7999999999999


Q ss_pred             HHHHHhCCcEEEEecC
Q 012882          181 VSRLLSTGTVLVATSN  196 (454)
Q Consensus       181 l~~L~~~G~vlV~ThN  196 (454)
                      +.++.+..+.||+.|.
T Consensus       717 L~rlca~RTtIVvAHR  732 (790)
T KOG0056|consen  717 LARLCANRTTIVVAHR  732 (790)
T ss_pred             HHHHhcCCceEEEeee
Confidence            9999877678888875

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.90  E-value=2.9e-09  Score=122.87  Aligned_cols=144  Identities=18%  Similarity=0.205  Sum_probs=100.8

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh-hhcccchhhhhhccccCCCCChH
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN-QVAEKSLRSSISGWITNLPFDSK  119 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~~~~~~  119 (454)
                      +.++-++++|++|||||+|+.++.|.++. ..|...++.         .+.|++|+ -..+.|+++|+.   ++.+++.+
T Consensus       545 ~~G~lvaVvG~vGsGKSSLL~AiLGEm~~-~sG~v~v~g---------siaYv~Q~pWI~ngTvreNIL---FG~~~d~~  611 (1381)
T KOG0054|consen  545 KKGQLVAVVGPVGSGKSSLLSAILGEMPK-LSGSVAVNG---------SVAYVPQQPWIQNGTVRENIL---FGSPYDEE  611 (1381)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCccc-ccceEEEcC---------eEEEeccccHhhCCcHHHhhh---cCccccHH
Confidence            44556999999999999999999999974 355555543         26777776 245668888872   33567788


Q ss_pred             HHHHHHHHHhhhhHHhh---cc--hHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH-HHHHHHHHH
Q 012882          120 VMEWVAAEEKYKQEVQM---KN--ILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA-LSGIVSRLL  185 (454)
Q Consensus       120 ~~e~ll~~~~l~~~~~~---~~--~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~-L~~ll~~L~  185 (454)
                      +.++++..+.+......   .|  .+.+-.-.|++++       ||+.++++|.+||+|. .+|...... +.+.+..+.
T Consensus       612 rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L  691 (1381)
T KOG0054|consen  612 RYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL  691 (1381)
T ss_pred             HHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh
Confidence            88899888888653221   11  1112222345554       7888999999999999 799887655 445565555


Q ss_pred             hCCcEEEEecCC
Q 012882          186 STGTVLVATSNR  197 (454)
Q Consensus       186 ~~G~vlV~ThN~  197 (454)
                      +..++|++||+.
T Consensus       692 ~~KT~ILVTHql  703 (1381)
T KOG0054|consen  692 RGKTVILVTHQL  703 (1381)
T ss_pred             cCCEEEEEeCch
Confidence            555599999974

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=98.90  E-value=7.2e-09  Score=98.70  Aligned_cols=44  Identities=25%  Similarity=0.255  Sum_probs=34.5

Q ss_pred             hccCCcEEEeeCCC-CCCHHH-HHHHHHHHHHHHhCC----cEEEEecCC
Q 012882          154 DQRGASILCFDEIQ-TVDVFA-IVALSGIVSRLLSTG----TVLVATSNR  197 (454)
Q Consensus       154 L~~~p~lL~LDEp~-~lD~~~-a~~L~~ll~~L~~~G----~vlV~ThN~  197 (454)
                      ++.++.+++||||+ ++|+.+ ...+..++..+.+.|    .+|++||+.
T Consensus       105 ~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~  154 (213)
T cd03281         105 LATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFH  154 (213)
T ss_pred             hCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChH
Confidence            34789999999999 999976 455567888887652    388899975

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK08727 hypothetical protein; Validated

Probab=98.90  E-value=1e-08  Score=98.95  Aligned_cols=66  Identities=23%  Similarity=0.271  Sum_probs=48.2

Q ss_pred             cCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchhcCCchhhhhHHHHHHHHhh---ccccccCC
Q 012882          156 RGASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKH---CEIIPIGS  230 (454)
Q Consensus       156 ~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~---~~vv~l~~  230 (454)
                      .++++||+||++  ..+..+...+.+++..+.+.|.-+|+|+|.+|.+|..-          ...|+.|   |.++.+..
T Consensus        92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~----------~~dL~SRl~~~~~~~l~~  161 (233)
T PRK08727         92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALV----------LPDLRSRLAQCIRIGLPV  161 (233)
T ss_pred             hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhh----------hHHHHHHHhcCceEEecC
Confidence            468999999999  34667778899999999888877777788889887531          1234444   66666665


Q ss_pred             c
Q 012882          231 E  231 (454)
Q Consensus       231 ~  231 (454)
                      .
T Consensus       162 ~  162 (233)
T PRK08727        162 L  162 (233)
T ss_pred             C
Confidence            4

>PRK08084 DNA replication initiation factor; Provisional

Probab=98.85  E-value=1.6e-08  Score=97.80  Aligned_cols=117  Identities=21%  Similarity=0.371  Sum_probs=78.6

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChHHHH
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVME  122 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~~~e  122 (454)
                      +..++|+||+|||||||+.+++..+.   ..+.++.|..+....    ..                              
T Consensus        45 ~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~----~~------------------------------   87 (235)
T PRK08084         45 SGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRA----WF------------------------------   87 (235)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHh----hh------------------------------
Confidence            46899999999999999999987653   123445554332100    00                              


Q ss_pred             HHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCc-EEEEecCCCc
Q 012882          123 WVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGT-VLVATSNRAP  199 (454)
Q Consensus       123 ~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~P  199 (454)
                                       ...+.+.+        .+.++||+||.+  ..+......|..++..+.+.|. .+|+|++.+|
T Consensus        88 -----------------~~~~~~~~--------~~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p  142 (235)
T PRK08084         88 -----------------VPEVLEGM--------EQLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP  142 (235)
T ss_pred             -----------------hHHHHHHh--------hhCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence                             01111222        246899999999  3578888899999999998876 6777888888


Q ss_pred             cchhcCCchhhhhHHHHHHHHhhc---cccccCCc
Q 012882          200 WDLNQDGMQREIFQKLVAKLEKHC---EIIPIGSE  231 (454)
Q Consensus       200 ~dLy~~~l~r~~F~~~I~~L~~~~---~vv~l~~~  231 (454)
                      .+|..-          .+.|..||   .++.+..+
T Consensus       143 ~~l~~~----------~~~L~SRl~~g~~~~l~~~  167 (235)
T PRK08084        143 RQLNLG----------LPDLASRLDWGQIYKLQPL  167 (235)
T ss_pred             HHcCcc----------cHHHHHHHhCCceeeecCC
Confidence            886531          13455566   67777665

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=7.6e-09  Score=107.35  Aligned_cols=159  Identities=24%  Similarity=0.335  Sum_probs=97.1

Q ss_pred             cccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhh
Q 012882           18 RWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQ   97 (454)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~   97 (454)
                      +.|+||+.-.++.++-||      -||||.|+||+|+|||+|.++++|....+...   ....+|- ++.-.++.     
T Consensus       318 EiVefLkdP~kftrLGGK------LPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~---~sGSEFd-Em~VGvGA-----  382 (752)
T KOG0734|consen  318 EIVEFLKDPTKFTRLGGK------LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFY---ASGSEFD-EMFVGVGA-----  382 (752)
T ss_pred             HHHHHhcCcHHhhhccCc------CCCceEEeCCCCCchhHHHHHhhcccCCCeEe---ccccchh-hhhhcccH-----
Confidence            445566665566555443      68999999999999999999999977421100   0001111 11111100     


Q ss_pred             hcccchhhhhhccccCCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC--C-----CC
Q 012882           98 VAEKSLRSSISGWITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ--T-----VD  170 (454)
Q Consensus        98 ~~~~t~~e~l~~~~~~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~--~-----lD  170 (454)
                                           .++               .+ +..-|+.         +-|+|+++||..  |     -|
T Consensus       383 ---------------------rRV---------------Rd-LF~aAk~---------~APcIIFIDEiDavG~kR~~~~  416 (752)
T KOG0734|consen  383 ---------------------RRV---------------RD-LFAAAKA---------RAPCIIFIDEIDAVGGKRNPSD  416 (752)
T ss_pred             ---------------------HHH---------------HH-HHHHHHh---------cCCeEEEEechhhhcccCCccH
Confidence                                 000               00 1222333         569999999997  2     23


Q ss_pred             H-HHHHHHHHHHHHHH----hCCcEEEEecCCCccchhc-----CCchhhhhHH------HHHHHHhhccccccCCchhh
Q 012882          171 V-FAIVALSGIVSRLL----STGTVLVATSNRAPWDLNQ-----DGMQREIFQK------LVAKLEKHCEIIPIGSEVDY  234 (454)
Q Consensus       171 ~-~~a~~L~~ll~~L~----~~G~vlV~ThN~~P~dLy~-----~~l~r~~F~~------~I~~L~~~~~vv~l~~~~Dy  234 (454)
                      . ...+-|.+||.++-    ..|+|+|...|+ |++|.+     ++++|..-.|      ..++|+.+..-+.++..+|.
T Consensus       417 ~~y~kqTlNQLLvEmDGF~qNeGiIvigATNf-pe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~  495 (752)
T KOG0734|consen  417 QHYAKQTLNQLLVEMDGFKQNEGIIVIGATNF-PEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDP  495 (752)
T ss_pred             HHHHHHHHHHHHHHhcCcCcCCceEEEeccCC-hhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCH
Confidence            3 34456777777772    247788888887 555544     5555544333      46889999999999999998


Q ss_pred             hhhc
Q 012882          235 RRLI  238 (454)
Q Consensus       235 R~~~  238 (454)
                      ..+.
T Consensus       496 ~iiA  499 (752)
T KOG0734|consen  496 KIIA  499 (752)
T ss_pred             hHhc
Confidence            7654

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=2.4e-09  Score=113.68  Aligned_cols=146  Identities=22%  Similarity=0.322  Sum_probs=92.5

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS  118 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~  118 (454)
                      ...+|+||.+|||+||||||+.++|+.....+   -..|...+.+       ..+..+                    ++
T Consensus       464 Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n---FlsvkgpEL~-------sk~vGe--------------------SE  513 (693)
T KOG0730|consen  464 GISPPKGVLLYGPPGCGKTLLAKALANEAGMN---FLSVKGPELF-------SKYVGE--------------------SE  513 (693)
T ss_pred             cCCCCceEEEECCCCcchHHHHHHHhhhhcCC---eeeccCHHHH-------HHhcCc--------------------hH
Confidence            45789999999999999999999999866321   1122121111       111100                    00


Q ss_pred             HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCCCC--C------HHHHHHHHHHHHHHH----h
Q 012882          119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTV--D------VFAIVALSGIVSRLL----S  186 (454)
Q Consensus       119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~~l--D------~~~a~~L~~ll~~L~----~  186 (454)
                      .   ++             ..+...|+..         .|.|++|||...+  .      -++...|..||+++-    .
T Consensus       514 r---~i-------------r~iF~kAR~~---------aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~  568 (693)
T KOG0730|consen  514 R---AI-------------REVFRKARQV---------APCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEAL  568 (693)
T ss_pred             H---HH-------------HHHHHHHhhc---------CCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccccc
Confidence            0   00             0012335443         4899999999621  1      234567778888773    2


Q ss_pred             CCcEEEEecCCC----ccchhcCCchhhhhHH------HHHHHHhhccccccCCchhhhhhcc
Q 012882          187 TGTVLVATSNRA----PWDLNQDGMQREIFQK------LVAKLEKHCEIIPIGSEVDYRRLIA  239 (454)
Q Consensus       187 ~G~vlV~ThN~~----P~dLy~~~l~r~~F~~------~I~~L~~~~~vv~l~~~~DyR~~~~  239 (454)
                      ++++||+..||+    |+-|.++++.+-.+.|      ..++|+.+.+-+.++..+|+.....
T Consensus       569 k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~  631 (693)
T KOG0730|consen  569 KNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQ  631 (693)
T ss_pred             CcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence            345888888985    4556667777755543      5788999999999988889887653

>PRK05642 DNA replication initiation factor; Validated

Probab=98.84  E-value=1.5e-08  Score=97.82  Aligned_cols=49  Identities=20%  Similarity=0.348  Sum_probs=40.9

Q ss_pred             cCCcEEEeeCCCC--CCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchhc
Q 012882          156 RGASILCFDEIQT--VDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQ  204 (454)
Q Consensus       156 ~~p~lL~LDEp~~--lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy~  204 (454)
                      .+.++||+|+.+.  -+......|..+++.+.+.|+.+|+|++.+|.++..
T Consensus        96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~  146 (234)
T PRK05642         96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPI  146 (234)
T ss_pred             hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCc
Confidence            4579999999993  456777889999999999899888899998887653

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=98.83  E-value=3.4e-08  Score=104.00  Aligned_cols=46  Identities=24%  Similarity=0.333  Sum_probs=37.4

Q ss_pred             CCcEEEeeCCC-CCCH-HHHHHHHHHHHHHHhCCcEEEEecCCCccch
Q 012882          157 GASILCFDEIQ-TVDV-FAIVALSGIVSRLLSTGTVLVATSNRAPWDL  202 (454)
Q Consensus       157 ~p~lL~LDEp~-~lD~-~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dL  202 (454)
                      ++++||+||++ ..+. .....+..++..+.+.|..+|+|+|.+|.+|
T Consensus       194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l  241 (440)
T PRK14088        194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKL  241 (440)
T ss_pred             cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHH
Confidence            58999999999 4443 3456788999999998887777888888875

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=98.83  E-value=2.8e-09  Score=99.13  Aligned_cols=42  Identities=26%  Similarity=0.420  Sum_probs=34.1

Q ss_pred             cCCcEEEeeCCC-CCCHHHHHHH-HHHHHHHHhC-Cc-EEEEecCC
Q 012882          156 RGASILCFDEIQ-TVDVFAIVAL-SGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       156 ~~p~lL~LDEp~-~lD~~~a~~L-~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      .+|+++++|||+ ++|+.+...+ ..++..+.++ |. +|++||+.
T Consensus        77 ~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~  122 (185)
T smart00534       77 TENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH  122 (185)
T ss_pred             CCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH
Confidence            489999999999 8999976664 6777877764 66 88999974

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=98.82  E-value=3.6e-08  Score=99.42  Aligned_cols=145  Identities=13%  Similarity=0.109  Sum_probs=85.2

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhhhhcccchhhhhhccccC--CCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKNQVAEKSLRSSISGWITN--LPF  116 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~--~~~  116 (454)
                      +.-|+|+|.|||||||+++++.|...|+ +|..++.....    ..+.++.+..+..+.        .+|...-+  ...
T Consensus       349 GelvFliG~NGsGKST~~~LLtGL~~Pq-sG~I~ldg~pV~~e~ledYR~LfSavFsDy--------hLF~~ll~~e~~a  419 (546)
T COG4615         349 GELVFLIGGNGSGKSTLAMLLTGLYQPQ-SGEILLDGKPVSAEQLEDYRKLFSAVFSDY--------HLFDQLLGPEGKA  419 (546)
T ss_pred             CcEEEEECCCCCcHHHHHHHHhcccCCC-CCceeECCccCCCCCHHHHHHHHHHHhhhH--------hhhHhhhCCccCC
Confidence            4559999999999999999999998753 55555544321    223333333332210        01111111  113


Q ss_pred             ChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH-HHHHhC
Q 012882          117 DSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV-SRLLST  187 (454)
Q Consensus       117 ~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll-~~L~~~  187 (454)
                      ++..++..+..+.+..+....+--. .--+++-++       .|++.+-+||+|||=. --||+-++.++..+ -.++++
T Consensus       420 s~q~i~~~LqrLel~~ktsl~d~~f-s~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~q  498 (546)
T COG4615         420 SPQLIEKWLQRLELAHKTSLNDGRF-SNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQ  498 (546)
T ss_pred             ChHHHHHHHHHHHHhhhhcccCCcc-cccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHh
Confidence            3455666666666544321111000 000111111       3677899999999999 69999998887655 556778


Q ss_pred             Cc-EEEEecCC
Q 012882          188 GT-VLVATSNR  197 (454)
Q Consensus       188 G~-vlV~ThN~  197 (454)
                      |+ |+.+||+-
T Consensus       499 GKTI~aIsHDd  509 (546)
T COG4615         499 GKTIFAISHDD  509 (546)
T ss_pred             CCeEEEEecCc
Confidence            98 88888873

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.82  E-value=1.6e-08  Score=96.36  Aligned_cols=44  Identities=14%  Similarity=0.128  Sum_probs=38.6

Q ss_pred             ccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC-C-c-EEEEecCCC
Q 012882          155 QRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST-G-T-VLVATSNRA  198 (454)
Q Consensus       155 ~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~-G-~-vlV~ThN~~  198 (454)
                      +.+|++|++|||+ ++|+..+..+.+++..+.+. | . +|++||+..
T Consensus       146 ~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~  193 (213)
T cd03277         146 LTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL  193 (213)
T ss_pred             ccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc
Confidence            4799999999999 89999999999999999776 5 3 899998753

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=4.3e-09  Score=108.99  Aligned_cols=138  Identities=12%  Similarity=0.117  Sum_probs=77.8

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEE----EechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRF----HFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS  118 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv----~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~  118 (454)
                      ---+.++|+||+||||+++++.+.+.|. .+-..+    .+.-|.+.-...+....+       ..+.+.....+  ..+
T Consensus       390 ~sRi~~vg~ng~gkst~lKi~~~~l~~~-rgi~~~~~r~ri~~f~Qhhvd~l~~~v~-------~vd~~~~~~pG--~~~  459 (582)
T KOG0062|consen  390 DSRISRVGENGDGKSTLLKILKGDLTPT-RGIVGRHPRLRIKYFAQHHVDFLDKNVN-------AVDFMEKSFPG--KTE  459 (582)
T ss_pred             hhhhheeccCchhHHHHHHHHhccCCcc-cceeeecccceecchhHhhhhHHHHHhH-------HHHHHHHhCCC--CCH
Confidence            3447899999999999999999977532 221111    111121110000000000       00001000011  134


Q ss_pred             HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcE
Q 012882          119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTV  190 (454)
Q Consensus       119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~v  190 (454)
                      +..+..++.+++.+....    . -...|++++       .....+|.+|+||||| .||..+-..|.+-|...  +|.|
T Consensus       460 ee~r~hl~~~Gl~g~la~----~-si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGV  532 (582)
T KOG0062|consen  460 EEIRRHLGSFGLSGELAL----Q-SIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGV  532 (582)
T ss_pred             HHHHHHHHhcCCCchhhh----c-cccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcE
Confidence            556666676776542211    1 123345554       2335899999999999 69998888887777665  5779


Q ss_pred             EEEecCC
Q 012882          191 LVATSNR  197 (454)
Q Consensus       191 lV~ThN~  197 (454)
                      +++|||.
T Consensus       533 v~VSHd~  539 (582)
T KOG0062|consen  533 VLVSHDE  539 (582)
T ss_pred             EEEECcH
Confidence            9999995

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.80  E-value=2.2e-08  Score=98.56  Aligned_cols=26  Identities=15%  Similarity=0.091  Sum_probs=24.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGATEG   69 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l~~   69 (454)
                      +.+.|+||+|||||||++++++.+++
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~  137 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILST  137 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCC
Confidence            78999999999999999999999874

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>COG3910 Predicted ATPase [General function prediction only]

Probab=98.80  E-value=2.8e-08  Score=91.12  Aligned_cols=41  Identities=24%  Similarity=0.418  Sum_probs=38.3

Q ss_pred             cCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecC
Q 012882          156 RGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSN  196 (454)
Q Consensus       156 ~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN  196 (454)
                      .+--|.+||||. +|.+.-++.|..+|..+.+.|. +||+||.
T Consensus       145 ~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHS  187 (233)
T COG3910         145 NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHS  187 (233)
T ss_pred             ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence            567899999999 8999999999999999999998 9999997

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.79  E-value=2.1e-08  Score=115.82  Aligned_cols=180  Identities=14%  Similarity=0.154  Sum_probs=112.4

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhh--hccc
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSI--SGWI  111 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l--~~~~  111 (454)
                      ...++.-++|+|..|||||||+.+|+..+++ ..|+..+..-+-    ..++++++..++|+ ..-..|++.|+  +.. 
T Consensus      1162 ~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~-~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e- 1239 (1381)
T KOG0054|consen 1162 TIKPGEKVGIVGRTGAGKSSLILALFRLVEP-AEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDE- 1239 (1381)
T ss_pred             EEcCCceEEEeCCCCCCHHHHHHHHHHhcCc-cCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccc-
Confidence            3456788999999999999999999999874 355555544322    23677888888887 23344566555  111 


Q ss_pred             cCCCCChHHHHHHHHHHhhhhHHh-----hcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          112 TNLPFDSKVMEWVAAEEKYKQEVQ-----MKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       112 ~~~~~~~~~~e~ll~~~~l~~~~~-----~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                          .+.+..=+.++...++..-.     .+..+.+=...++.++       |||+++++||+|||.| ..|+++-..+.
T Consensus      1240 ----~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ 1315 (1381)
T KOG0054|consen 1240 ----YSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQ 1315 (1381)
T ss_pred             ----cCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHH
Confidence                11222223344444432110     0111111111223332       7889999999999999 89999999999


Q ss_pred             HHHHHHHhCCcEEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCchhhh
Q 012882          179 GIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYR  235 (454)
Q Consensus       179 ~ll~~L~~~G~vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~DyR  235 (454)
                      +.+++-++.-+||.+.|. ...=+.+|++          +..++++|++.|+|....
T Consensus      1316 ~tIR~~F~dcTVltIAHR-l~TVmd~DrV----------lVld~G~v~EfdsP~~Ll 1361 (1381)
T KOG0054|consen 1316 KTIREEFKDCTVLTIAHR-LNTVMDSDRV----------LVLDAGRVVEFDSPAELL 1361 (1381)
T ss_pred             HHHHHHhcCCeEEEEeec-cchhhhcCeE----------EEeeCCeEeecCChHHHH
Confidence            999999886558888874 3333333432          344667777777764433

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=98.78  E-value=2.9e-08  Score=106.88  Aligned_cols=48  Identities=25%  Similarity=0.261  Sum_probs=40.8

Q ss_pred             cCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchh
Q 012882          156 RGASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLN  203 (454)
Q Consensus       156 ~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy  203 (454)
                      .+++|||+||++  ..+..+...|+.+|+.+.+.|+.||+|+|++|.+|-
T Consensus       376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~  425 (617)
T PRK14086        376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV  425 (617)
T ss_pred             hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence            578999999999  355667788999999999988877789999998874

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=98.78  E-value=3.9e-08  Score=103.76  Aligned_cols=47  Identities=17%  Similarity=0.217  Sum_probs=41.4

Q ss_pred             cCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccch
Q 012882          156 RGASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDL  202 (454)
Q Consensus       156 ~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dL  202 (454)
                      .++++||+||++  ..+......|..++..+.+.|..+|+|+|.+|.++
T Consensus       205 ~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l  253 (450)
T PRK14087        205 CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL  253 (450)
T ss_pred             ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence            579999999999  35577888999999999999888899999999876

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=2.3e-08  Score=105.29  Aligned_cols=144  Identities=21%  Similarity=0.309  Sum_probs=83.5

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS  118 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~  118 (454)
                      +..+|+||.|+||+|||||+|.++|+|.+.-+.   ..+...       ..+.-+..+                    ++
T Consensus       219 Gv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf---~~isAp-------eivSGvSGE--------------------SE  268 (802)
T KOG0733|consen  219 GVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF---LSISAP-------EIVSGVSGE--------------------SE  268 (802)
T ss_pred             CCCCCCceeeeCCCCccHHHHHHHHhhhcCCce---Eeecch-------hhhcccCcc--------------------cH
Confidence            557899999999999999999999999875211   111110       111111100                    01


Q ss_pred             HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCCC----CCHHHH----HHHHHHHHHH---HhC
Q 012882          119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT----VDVFAI----VALSGIVSRL---LST  187 (454)
Q Consensus       119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~~----lD~~~a----~~L~~ll~~L---~~~  187 (454)
                      ..+++                +..-|..         .-|+|+++||...    -+.+.+    .++.+|+..+   ...
T Consensus       269 kkiRe----------------lF~~A~~---------~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~  323 (802)
T KOG0733|consen  269 KKIRE----------------LFDQAKS---------NAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNE  323 (802)
T ss_pred             HHHHH----------------HHHHHhc---------cCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccc
Confidence            11111                1112333         3599999999982    222332    3444444443   211


Q ss_pred             ---C--cEEEEecCCCccchhc-----CCchhhhhH------HHHHHHHhhccccccCCchhhhhhc
Q 012882          188 ---G--TVLVATSNRAPWDLNQ-----DGMQREIFQ------KLVAKLEKHCEIIPIGSEVDYRRLI  238 (454)
Q Consensus       188 ---G--~vlV~ThN~~P~dLy~-----~~l~r~~F~------~~I~~L~~~~~vv~l~~~~DyR~~~  238 (454)
                         |  +++|.+.|| |+-|.+     +++.|+.-+      ..-.+|...|+-+.+++..||++..
T Consensus       324 ~~~g~~VlVIgATnR-PDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA  389 (802)
T KOG0733|consen  324 KTKGDPVLVIGATNR-PDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLA  389 (802)
T ss_pred             ccCCCCeEEEecCCC-CcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHH
Confidence               3  366777777 444443     444444322      2346888999999999999999865

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=3.9e-08  Score=99.97  Aligned_cols=154  Identities=12%  Similarity=0.150  Sum_probs=88.5

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhhh-hcccchhhhh-hcccc
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKNQ-VAEKSLRSSI-SGWIT  112 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~~-~~~~t~~e~l-~~~~~  112 (454)
                      ..++++-+.++|++|+||||++++++....++ .|...+......    ..+++.++.++|.. ..+-|..-++ ++.. 
T Consensus       285 ~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~-sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~-  362 (497)
T COG5265         285 TIPLGKTVAIVGESGAGKSTILRLLFRFYDVN-SGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP-  362 (497)
T ss_pred             cccCccEEEEEeCCCCcHHHHHHHHHHHhCCc-CceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCc-
Confidence            34677889999999999999999999988643 444444333221    24556666666651 1111222222 1111 


Q ss_pred             CCCCChHHHHHHHHHHhhhh---HH--hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          113 NLPFDSKVMEWVAAEEKYKQ---EV--QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       113 ~~~~~~~~~e~ll~~~~l~~---~~--~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                        ....+.+...++...+..   ..  +.+-...+..-.++++.       |+++++|+||+|||.| .||-.+...+..
T Consensus       363 --~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~  440 (497)
T COG5265         363 --DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQA  440 (497)
T ss_pred             --cccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHH
Confidence              111122222222222211   00  00111111111122221       6778999999999999 799999999999


Q ss_pred             HHHHHHhCCcEEEEecC
Q 012882          180 IVSRLLSTGTVLVATSN  196 (454)
Q Consensus       180 ll~~L~~~G~vlV~ThN  196 (454)
                      -|+.+....+.+|+.|-
T Consensus       441 ~l~~~~~~rttlviahr  457 (497)
T COG5265         441 ALREVSAGRTTLVIAHR  457 (497)
T ss_pred             HHHHHhCCCeEEEEeeh
Confidence            99998755558888885

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=98.73  E-value=1.4e-08  Score=94.30  Aligned_cols=146  Identities=20%  Similarity=0.162  Sum_probs=81.8

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEE----EechhHHHHHHHHHHHhhh------------hhcccchh
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRF----HFHEAMLKINEHMHRLWKN------------QVAEKSLR  104 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv----~f~~f~~~~~~~i~~~~~~------------~~~~~t~~  104 (454)
                      +.+.--.|+|.||+|||||++++.|.--. -.+...|    .||+-...-...+.|+..+            +..+.++.
T Consensus        38 p~gsRcLlVGaNGaGKtTlLKiLsGKhmv-~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae  116 (291)
T KOG2355|consen   38 PAGSRCLLVGANGAGKTTLLKILSGKHMV-GGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAE  116 (291)
T ss_pred             CCCceEEEEecCCCchhhhHHHhcCcccc-cCCeEEEcCcCccccccccccCceeEecccccccccccccccccccccHH
Confidence            44555789999999999999999985321 0133333    2332211111112222111            11133444


Q ss_pred             hhhhccccCCCCChHHHHHHHHHHhhhhH------HhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882          105 SSISGWITNLPFDSKVMEWVAAEEKYKQE------VQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAIVAL  177 (454)
Q Consensus       105 e~l~~~~~~~~~~~~~~e~ll~~~~l~~~------~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a~~L  177 (454)
                      ..+|+--.   .+..+.+.+...+.+.-.      .+.....-+++.       .|++.-++|+|||.| -||+..++.|
T Consensus       117 ~mifgV~g---~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicM-------GLL~PfkVLLLDEVTVDLDVlARadL  186 (291)
T KOG2355|consen  117 HMIFGVGG---DDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICM-------GLLKPFKVLLLDEVTVDLDVLARADL  186 (291)
T ss_pred             HHHhhccC---CChhHhhhhhhheeccceEEEeeccccchhhhHHHH-------hcccceeEEEeeeeEeehHHHHHHHH
Confidence            44433211   122555666655554210      000111122222       345778899999999 5999999999


Q ss_pred             HHHHHHHHh-CCc-EEEEecCC
Q 012882          178 SGIVSRLLS-TGT-VLVATSNR  197 (454)
Q Consensus       178 ~~ll~~L~~-~G~-vlV~ThN~  197 (454)
                      .++|++--+ +|. |+.+||-.
T Consensus       187 LeFlkeEce~RgatIVYATHIF  208 (291)
T KOG2355|consen  187 LEFLKEECEQRGATIVYATHIF  208 (291)
T ss_pred             HHHHHHHHhhcCcEEEEEeeec
Confidence            999987665 576 88899864

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=98.71  E-value=8.1e-08  Score=101.50  Aligned_cols=48  Identities=27%  Similarity=0.318  Sum_probs=39.4

Q ss_pred             cCCcEEEeeCCCC--CCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchh
Q 012882          156 RGASILCFDEIQT--VDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLN  203 (454)
Q Consensus       156 ~~p~lL~LDEp~~--lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy  203 (454)
                      .++++||+||.+.  -.......+..+|..+.+.|..+|+|+|.+|.+|.
T Consensus       210 ~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~  259 (450)
T PRK00149        210 RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP  259 (450)
T ss_pred             hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence            4689999999993  34456778999999999988877888899988864

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=98.70  E-value=7.5e-08  Score=101.37  Aligned_cols=48  Identities=23%  Similarity=0.299  Sum_probs=40.4

Q ss_pred             cCCcEEEeeCCCC--CCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchh
Q 012882          156 RGASILCFDEIQT--VDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLN  203 (454)
Q Consensus       156 ~~p~lL~LDEp~~--lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy  203 (454)
                      .++++|++||++.  -...+...+..++..+...|..+|+|+|.+|.+|.
T Consensus       201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~  250 (445)
T PRK12422        201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLK  250 (445)
T ss_pred             ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHh
Confidence            5789999999993  35567888999999998888888888899988864

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=98.70  E-value=1.1e-07  Score=98.83  Aligned_cols=30  Identities=40%  Similarity=0.643  Sum_probs=26.9

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ...+|+|+.|+||+|||||+|++++++.+.
T Consensus       175 Gl~~pkgvLL~GppGTGKT~LAkalA~~l~  204 (398)
T PTZ00454        175 GIDPPRGVLLYGPPGTGKTMLAKAVAHHTT  204 (398)
T ss_pred             CCCCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence            346799999999999999999999998764

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=98.69  E-value=1e-07  Score=99.27  Aligned_cols=48  Identities=27%  Similarity=0.315  Sum_probs=38.8

Q ss_pred             cCCcEEEeeCCCC--CCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchh
Q 012882          156 RGASILCFDEIQT--VDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLN  203 (454)
Q Consensus       156 ~~p~lL~LDEp~~--lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy  203 (454)
                      .++++|++||++.  -.......+..+|..+.+.|..+|+|+|.+|.+|.
T Consensus       198 ~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~  247 (405)
T TIGR00362       198 RSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELP  247 (405)
T ss_pred             HhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHh
Confidence            4589999999993  33345678999999999888878888999998864

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=98.68  E-value=4.5e-08  Score=93.92  Aligned_cols=27  Identities=37%  Similarity=0.712  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      +|+.|.+|||+|+||||+.+++++...
T Consensus       150 APknVLFyGppGTGKTm~Akalane~k  176 (368)
T COG1223         150 APKNVLFYGPPGTGKTMMAKALANEAK  176 (368)
T ss_pred             CcceeEEECCCCccHHHHHHHHhcccC
Confidence            789999999999999999999999775

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=98.67  E-value=8.8e-08  Score=100.65  Aligned_cols=171  Identities=13%  Similarity=0.090  Sum_probs=99.7

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhh-cccchhhhhhcc-----ccC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQV-AEKSLRSSISGW-----ITN  113 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~-~~~t~~e~l~~~-----~~~  113 (454)
                      .+.++.+.|.||||||||+|++++.|.=|. ..|+...++..-.    +.+-+++|+.+ ...|.++.+.--     ...
T Consensus       458 V~~g~~LLItG~sG~GKtSLlRvlggLWp~-~~G~l~k~~~~~~----~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~  532 (659)
T KOG0060|consen  458 VPSGQNLLITGPSGCGKTSLLRVLGGLWPS-TGGKLTKPTDGGP----KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDS  532 (659)
T ss_pred             ecCCCeEEEECCCCCchhHHHHHHhccccc-CCCeEEecccCCC----CceEEecCCCCccccchhheeeccCccccccc
Confidence            345677999999999999999999997762 2233222221100    22334454421 112333332110     001


Q ss_pred             CCCChHHHHHHHHHHhhhhHH---h-hc-chHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882          114 LPFDSKVMEWVAAEEKYKQEV---Q-MK-NILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI  180 (454)
Q Consensus       114 ~~~~~~~~e~ll~~~~l~~~~---~-~~-~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l  180 (454)
                      ...+......+++..++.+-.   + .+ .......+.++.+.       |-+.++|++-+|||-| .+|..-...+.++
T Consensus       533 ~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~  612 (659)
T KOG0060|consen  533 KSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRK  612 (659)
T ss_pred             cCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHH
Confidence            112234445555555543311   1 11 12233444454443       5667999999999999 7888877778777


Q ss_pred             HHHHHhCCcEEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCchhhhh
Q 012882          181 VSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRR  236 (454)
Q Consensus       181 l~~L~~~G~vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~DyR~  236 (454)
                      +++   .|...|+-++|                  -.+-+.|-.++.++|+..||.
T Consensus       613 ~r~---~giT~iSVgHR------------------kSL~kfHd~~L~~~g~g~w~~  647 (659)
T KOG0060|consen  613 CRE---MGITFISVGHR------------------KSLWKFHDYVLRMDGRGSWRF  647 (659)
T ss_pred             HHH---cCCeEEEeccH------------------HHHHhhhhEEEEecCCCceEE
Confidence            665   57877766665                  245567788899999877775

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.64  E-value=1.1e-07  Score=88.84  Aligned_cols=153  Identities=15%  Similarity=0.228  Sum_probs=85.3

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcc-cCceEEEechhHH----------HHHHHHHHHhhh----hhcccchhh
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIV-KHRQRFHFHEAML----------KINEHMHRLWKN----QVAEKSLRS  105 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~-~~k~rv~f~~f~~----------~~~~~i~~~~~~----~~~~~t~~e  105 (454)
                      +-+.--+|+|.+|+|||.+.++|+|.....- ...-|..|++.-.          -+-+.+..+.|+    +.+..++..
T Consensus        31 nEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~  110 (330)
T COG4170          31 NEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGR  110 (330)
T ss_pred             ccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHH
Confidence            3456678999999999999999999764210 0112333333210          111222333332    112222222


Q ss_pred             ----hhhccccC------CCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-
Q 012882          106 ----SISGWITN------LPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-  167 (454)
Q Consensus       106 ----~l~~~~~~------~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-  167 (454)
                          ++..|.+.      +.+...++-+++...++++..   +++.....++..+.       .|++.+|++|+-|||+ 
T Consensus       111 QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHk---DIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN  187 (330)
T COG4170         111 QLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK---DIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTN  187 (330)
T ss_pred             HHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHH---HHHHhCcchhccCcceeeeeehhhccCCceEeccCCCc
Confidence                22222111      122223444555555554321   22222222222222       5788999999999999 


Q ss_pred             CCCHHHHHHHHHHHHHHHhC-Cc-EEEEecC
Q 012882          168 TVDVFAIVALSGIVSRLLST-GT-VLVATSN  196 (454)
Q Consensus       168 ~lD~~~a~~L~~ll~~L~~~-G~-vlV~ThN  196 (454)
                      .+++.++..+.+++.++.+. |+ +++++|+
T Consensus       188 ~~e~~Tq~QifRLLs~mNQn~~TtILL~s~D  218 (330)
T COG4170         188 SMEPTTQAQIFRLLSRLNQNSNTTILLISHD  218 (330)
T ss_pred             ccCccHHHHHHHHHHHhhccCCceEEEEccc
Confidence            79999999999999999865 66 6666665

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=98.63  E-value=4.7e-07  Score=87.24  Aligned_cols=43  Identities=19%  Similarity=0.312  Sum_probs=35.6

Q ss_pred             cCCcEEEeeCCC-CC----CHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 012882          156 RGASILCFDEIQ-TV----DVFAIVALSGIVSRLLSTGTVLVATSNRA  198 (454)
Q Consensus       156 ~~p~lL~LDEp~-~l----D~~~a~~L~~ll~~L~~~G~vlV~ThN~~  198 (454)
                      .+|+++++|||+ .+    |+.....+.++++.+.+.|.++++||+..
T Consensus       116 ~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~~~  163 (230)
T PRK08533        116 YEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTANPK  163 (230)
T ss_pred             cCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEeccc
Confidence            479999999999 55    77777888899999988888888888853

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=98.63  E-value=1.4e-07  Score=112.02  Aligned_cols=47  Identities=19%  Similarity=0.228  Sum_probs=42.4

Q ss_pred             hhhc---cCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCCC
Q 012882          152 HADQ---RGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNRA  198 (454)
Q Consensus       152 rAL~---~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~  198 (454)
                      ++|+   .+|++|+||||+ +||+.+...+.++|.++.+.|. ||++|||..
T Consensus       822 raL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~  873 (1809)
T PRK00635        822 YELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH  873 (1809)
T ss_pred             HHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            5675   699999999999 8999999999999999998887 999999864

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=98.61  E-value=6e-08  Score=98.39  Aligned_cols=142  Identities=18%  Similarity=0.179  Sum_probs=84.5

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCC-------cccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEG-------IVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITN  113 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~-------~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~  113 (454)
                      .++.-+++.|++|+||||+++++.|...+       +.+++..+.-+...       ..++.+..+.+. ..++..+...
T Consensus       407 kpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~-------a~iPge~Ep~f~-~~tilehl~s  478 (593)
T COG2401         407 KPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS-------ALIPGEYEPEFG-EVTILEHLRS  478 (593)
T ss_pred             cCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchh-------hccCcccccccC-chhHHHHHhh
Confidence            46677999999999999999999996531       12333333222210       111222111111 1122222233


Q ss_pred             CCCChHHHHHHHHHHhhhhHHhh----------cchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882          114 LPFDSKVMEWVAAEEKYKQEVQM----------KNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAIVALSGIVS  182 (454)
Q Consensus       114 ~~~~~~~~e~ll~~~~l~~~~~~----------~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~  182 (454)
                      ...+...+.+++...++.+..-.          ...-..+|+       ++...|.+++.|||. .||..+++.+.+-|.
T Consensus       479 ~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAk-------llaerpn~~~iDEF~AhLD~~TA~rVArkis  551 (593)
T COG2401         479 KTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAK-------LLAERPNVLLIDEFAAHLDELTAVRVARKIS  551 (593)
T ss_pred             ccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHH-------HHhcCCCcEEhhhhhhhcCHHHHHHHHHHHH
Confidence            33444445556655555432100          011122333       445889999999999 899999999999999


Q ss_pred             HHHhC-Cc-EEEEecCC
Q 012882          183 RLLST-GT-VLVATSNR  197 (454)
Q Consensus       183 ~L~~~-G~-vlV~ThN~  197 (454)
                      ++... |. ++++||+.
T Consensus       552 elaRe~giTlivvThrp  568 (593)
T COG2401         552 ELAREAGITLIVVTHRP  568 (593)
T ss_pred             HHHHHhCCeEEEEecCH
Confidence            99854 66 88888874

>TIGR01069 mutS2 MutS2 family protein

Probab=98.61  E-value=1.1e-07  Score=106.10  Aligned_cols=42  Identities=31%  Similarity=0.366  Sum_probs=36.4

Q ss_pred             cCCcEEEeeCCC-CCCHHHHHHH-HHHHHHHHhCCc-EEEEecCC
Q 012882          156 RGASILCFDEIQ-TVDVFAIVAL-SGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       156 ~~p~lL~LDEp~-~lD~~~a~~L-~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      .++.+++||||+ ++|+.+...+ ..++..+.+.|. +|++||+.
T Consensus       401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~  445 (771)
T TIGR01069       401 TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYK  445 (771)
T ss_pred             CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChH
Confidence            579999999999 9999999888 578888888887 88888874

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=98.60  E-value=4.1e-07  Score=87.16  Aligned_cols=43  Identities=21%  Similarity=0.228  Sum_probs=35.0

Q ss_pred             cCCcEEEeeCCC-CCCHHHHHH-HHHHHHHHHhC-Cc-EEEEecCCC
Q 012882          156 RGASILCFDEIQ-TVDVFAIVA-LSGIVSRLLST-GT-VLVATSNRA  198 (454)
Q Consensus       156 ~~p~lL~LDEp~-~lD~~~a~~-L~~ll~~L~~~-G~-vlV~ThN~~  198 (454)
                      .++.+++||||. +++..+... ...+++.+.+. +. ++++||+..
T Consensus       109 ~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~  155 (222)
T cd03287         109 TSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPS  155 (222)
T ss_pred             CCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence            579999999999 888777766 46788888876 66 999999853

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=98.60  E-value=1.9e-07  Score=89.13  Aligned_cols=42  Identities=26%  Similarity=0.296  Sum_probs=29.5

Q ss_pred             cCCcEEEeeCCC-CCCHHHHH-HHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          156 RGASILCFDEIQ-TVDVFAIV-ALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       156 ~~p~lL~LDEp~-~lD~~~a~-~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      .+|++++||||. +++..+.. ....++..+.+. +. +|++||+.
T Consensus       108 ~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~  153 (216)
T cd03284         108 TERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYH  153 (216)
T ss_pred             CCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcH
Confidence            689999999995 44433332 345667777766 66 89999974

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PRK06620 hypothetical protein; Validated

Probab=98.60  E-value=2.6e-07  Score=88.07  Aligned_cols=60  Identities=17%  Similarity=0.180  Sum_probs=43.4

Q ss_pred             CCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchhcCCchhhhhHHHHHHHHhhcc---ccccCCc
Q 012882          157 GASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCE---IIPIGSE  231 (454)
Q Consensus       157 ~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~---vv~l~~~  231 (454)
                      ..++||+||.+..   ....|..+++.+.+.|..+++|++.+|.++.            ++.|..|+.   ++.+..+
T Consensus        85 ~~d~lliDdi~~~---~~~~lf~l~N~~~e~g~~ilits~~~p~~l~------------l~~L~SRl~~gl~~~l~~p  147 (214)
T PRK06620         85 KYNAFIIEDIENW---QEPALLHIFNIINEKQKYLLLTSSDKSRNFT------------LPDLSSRIKSVLSILLNSP  147 (214)
T ss_pred             cCCEEEEeccccc---hHHHHHHHHHHHHhcCCEEEEEcCCCccccc------------hHHHHHHHhCCceEeeCCC
Confidence            4689999999943   2357889999999999988888888888641            123444444   7777665

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=98.59  E-value=2.9e-07  Score=94.69  Aligned_cols=29  Identities=41%  Similarity=0.670  Sum_probs=26.3

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ..+|+|+.|+||+|||||+|++++++.+.
T Consensus       153 ~~~p~gvLL~GppGtGKT~lakaia~~l~  181 (364)
T TIGR01242       153 IEPPKGVLLYGPPGTGKTLLAKAVAHETN  181 (364)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHhCC
Confidence            45789999999999999999999998774

Many proteins may score above the trusted cutoff because an internal

>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=5.3e-07  Score=86.19  Aligned_cols=144  Identities=25%  Similarity=0.303  Sum_probs=98.4

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS  118 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~  118 (454)
                      ....|+|+.||||+|+|||.|.++.+.....   .-.|+...+..+   +-++.-..                       
T Consensus       177 GIaQPKGvlLygppgtGktLlaraVahht~c---~firvsgselvq---k~igegsr-----------------------  227 (404)
T KOG0728|consen  177 GIAQPKGVLLYGPPGTGKTLLARAVAHHTDC---TFIRVSGSELVQ---KYIGEGSR-----------------------  227 (404)
T ss_pred             CCCCCcceEEecCCCCchhHHHHHHHhhcce---EEEEechHHHHH---HHhhhhHH-----------------------
Confidence            4567999999999999999999999887653   124554443322   22221100                       


Q ss_pred             HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-----------CCCHHHHHHHHHHHHHHH--
Q 012882          119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-----------TVDVFAIVALSGIVSRLL--  185 (454)
Q Consensus       119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-----------~lD~~~a~~L~~ll~~L~--  185 (454)
                                       +-..+.-+|++         +.|.|+++||..           +-|..-+..+.++++.|-  
T Consensus       228 -----------------mvrelfvmare---------hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgf  281 (404)
T KOG0728|consen  228 -----------------MVRELFVMARE---------HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGF  281 (404)
T ss_pred             -----------------HHHHHHHHHHh---------cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccc
Confidence                             00011233444         679999999985           247777777888888873  


Q ss_pred             h--CCc-EEEEecCC----CccchhcCCchhhhhH------HHHHHHHhhccccccCCchhhhhhc
Q 012882          186 S--TGT-VLVATSNR----APWDLNQDGMQREIFQ------KLVAKLEKHCEIIPIGSEVDYRRLI  238 (454)
Q Consensus       186 ~--~G~-vlV~ThN~----~P~dLy~~~l~r~~F~------~~I~~L~~~~~vv~l~~~~DyR~~~  238 (454)
                      +  .+. ||++| ||    .|+-|.+++++|..-.      ...++|+-|.+-+++-.+.|.|+..
T Consensus       282 eatknikvimat-nridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kia  346 (404)
T KOG0728|consen  282 EATKNIKVIMAT-NRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIA  346 (404)
T ss_pred             ccccceEEEEec-cccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHH
Confidence            2  345 66666 54    4788889999986533      3578899999999999999999864

>PLN03025 replication factor C subunit; Provisional

Probab=98.55  E-value=2.6e-07  Score=93.32  Aligned_cols=59  Identities=19%  Similarity=0.174  Sum_probs=39.8

Q ss_pred             CceeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882            1 MDVSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      +-|.++|+|.+++.-.|.-- .+   +.+..++..     .....++|+||+|+||||++.+++..+.
T Consensus         1 ~~w~~kyrP~~l~~~~g~~~-~~---~~L~~~~~~-----~~~~~lll~Gp~G~GKTtla~~la~~l~   59 (319)
T PLN03025          1 LPWVEKYRPTKLDDIVGNED-AV---SRLQVIARD-----GNMPNLILSGPPGTGKTTSILALAHELL   59 (319)
T ss_pred             CChhhhcCCCCHHHhcCcHH-HH---HHHHHHHhc-----CCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence            35899999999998765210 00   123333222     1223599999999999999999988763

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=98.55  E-value=3.7e-07  Score=94.14  Aligned_cols=68  Identities=25%  Similarity=0.318  Sum_probs=52.3

Q ss_pred             CCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCc
Q 012882          157 GASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSE  231 (454)
Q Consensus       157 ~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~  231 (454)
                      +.++||+|..+  .-+......+..+|+.+.+.|+-||+|++++|.+|-.--      -....++ ..|.++.+..+
T Consensus       175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~------~rL~SR~-~~Gl~~~I~~P  244 (408)
T COG0593         175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLE------DRLRSRL-EWGLVVEIEPP  244 (408)
T ss_pred             ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhcccc------HHHHHHH-hceeEEeeCCC
Confidence            57999999999  566677999999999999999999999999999976311      0122333 35667777777

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=2.7e-07  Score=100.75  Aligned_cols=145  Identities=24%  Similarity=0.262  Sum_probs=92.7

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS  118 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~  118 (454)
                      ....|+|+.|+||+|||||.|+++++|...-+.   ..+...+|+.. ....+..                         
T Consensus       340 GAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF---~svSGSEFvE~-~~g~~as-------------------------  390 (774)
T KOG0731|consen  340 GAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF---FSVSGSEFVEM-FVGVGAS-------------------------  390 (774)
T ss_pred             CCcCcCceEEECCCCCcHHHHHHHHhcccCCce---eeechHHHHHH-hcccchH-------------------------
Confidence            456899999999999999999999999764211   22333344321 1111000                         


Q ss_pred             HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC--C----------CCHHHHHHHHHHHHHHH-
Q 012882          119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ--T----------VDVFAIVALSGIVSRLL-  185 (454)
Q Consensus       119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~--~----------lD~~~a~~L~~ll~~L~-  185 (454)
                       +               . .-+...|+.         .-|.+++.||+.  +          -.-....-|.+++.++= 
T Consensus       391 -r---------------v-r~lf~~ar~---------~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDg  444 (774)
T KOG0731|consen  391 -R---------------V-RDLFPLARK---------NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDG  444 (774)
T ss_pred             -H---------------H-HHHHHHhhc---------cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcC
Confidence             0               0 012334544         359999999985  1          12234456777887773 


Q ss_pred             ---hCCcEEEEecCCC----ccchhcCCchhhhhHH------HHHHHHhhccccccC-Cchhhhhhc
Q 012882          186 ---STGTVLVATSNRA----PWDLNQDGMQREIFQK------LVAKLEKHCEIIPIG-SEVDYRRLI  238 (454)
Q Consensus       186 ---~~G~vlV~ThN~~----P~dLy~~~l~r~~F~~------~I~~L~~~~~vv~l~-~~~DyR~~~  238 (454)
                         ..|+|++++.||+    |+-|.++++.|..+.+      -.++++-|..-+.++ ..+||.+..
T Consensus       445 f~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a  511 (774)
T KOG0731|consen  445 FETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLA  511 (774)
T ss_pred             CcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHH
Confidence               2345888888875    6667778888877653      246777788888884 678998843

>PRK09087 hypothetical protein; Validated

Probab=98.52  E-value=3.6e-07  Score=87.89  Aligned_cols=45  Identities=22%  Similarity=0.275  Sum_probs=36.7

Q ss_pred             cEEEeeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchhc
Q 012882          159 SILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQ  204 (454)
Q Consensus       159 ~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy~  204 (454)
                      .+||+|+.+.+. .+...|..+++.+.+.|+.+|+|++.+|.+|..
T Consensus        89 ~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~  133 (226)
T PRK09087         89 GPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNV  133 (226)
T ss_pred             CeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhcc
Confidence            689999999542 345679999999999999888899988887654

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=98.51  E-value=9.6e-07  Score=89.56  Aligned_cols=30  Identities=20%  Similarity=0.388  Sum_probs=27.2

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ...+|+|++||||+|||||++.+++++.+.
T Consensus       144 ~ik~PlgllL~GPPGcGKTllAraiA~elg  173 (413)
T PLN00020        144 NIKVPLILGIWGGKGQGKSFQCELVFKKMG  173 (413)
T ss_pred             CCCCCeEEEeeCCCCCCHHHHHHHHHHHcC
Confidence            357899999999999999999999999774

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=98.50  E-value=4.7e-07  Score=93.97  Aligned_cols=30  Identities=40%  Similarity=0.654  Sum_probs=26.6

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      +..+|+|+.|+||+|||||+++++++..+.
T Consensus       161 g~~~p~gvLL~GppGtGKT~lAkaia~~~~  190 (389)
T PRK03992        161 GIEPPKGVLLYGPPGTGKTLLAKAVAHETN  190 (389)
T ss_pred             CCCCCCceEEECCCCCChHHHHHHHHHHhC
Confidence            346789999999999999999999998764

>CHL00206 ycf2 Ycf2; Provisional

Probab=98.50  E-value=2.6e-07  Score=108.14  Aligned_cols=29  Identities=17%  Similarity=0.511  Sum_probs=26.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ..+|+|+.|+||+|||||.|++++++...
T Consensus      1627 l~pPKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206       1627 LSPSRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred             CCCCCceEEECCCCCCHHHHHHHHHHhcC
Confidence            45799999999999999999999999764

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=98.49  E-value=5.9e-07  Score=90.71  Aligned_cols=59  Identities=22%  Similarity=0.201  Sum_probs=39.5

Q ss_pred             CceeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882            1 MDVSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      |-|.++|+|.+++.-.|.  +.  -.+.+.+++..     +....++|+||+|+||||++++++..+.
T Consensus         3 ~~w~~ky~P~~~~~~~g~--~~--~~~~L~~~~~~-----~~~~~lll~Gp~GtGKT~la~~~~~~l~   61 (337)
T PRK12402          3 PLWTEKYRPALLEDILGQ--DE--VVERLSRAVDS-----PNLPHLLVQGPPGSGKTAAVRALARELY   61 (337)
T ss_pred             CchHHhhCCCcHHHhcCC--HH--HHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence            569999999988754431  00  11223333322     1223699999999999999999988764

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.49  E-value=1.1e-07  Score=96.93  Aligned_cols=51  Identities=20%  Similarity=0.201  Sum_probs=41.2

Q ss_pred             hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchhc
Q 012882          152 HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQ  204 (454)
Q Consensus       152 rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy~  204 (454)
                      |||..+|.+|+||||| .||.....+|-..|....  .+.+|++|+...-|-.|
T Consensus       425 RALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk--KTLLIVSHDQgFLD~VC  476 (807)
T KOG0066|consen  425 RALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQGFLDSVC  476 (807)
T ss_pred             HHHhcCceeeeecCCccccccceeeehhhHHhhhh--heeEEEecccchHHHHH
Confidence            6888999999999999 799988888887777663  35999999976554444

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.49  E-value=6.7e-07  Score=77.16  Aligned_cols=23  Identities=30%  Similarity=0.365  Sum_probs=21.2

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ++|+||+|+||||+++.++..+.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~   23 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLG   23 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTT
T ss_pred             CEEECcCCCCeeHHHHHHHhhcc
Confidence            68999999999999999999874

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=98.49  E-value=6e-07  Score=86.08  Aligned_cols=40  Identities=25%  Similarity=0.308  Sum_probs=28.2

Q ss_pred             ccCCcEEEeeCC---C-CCCHHHHHHHHHHHHHHHh-CCc-EEEEecC
Q 012882          155 QRGASILCFDEI---Q-TVDVFAIVALSGIVSRLLS-TGT-VLVATSN  196 (454)
Q Consensus       155 ~~~p~lL~LDEp---~-~lD~~~a~~L~~ll~~L~~-~G~-vlV~ThN  196 (454)
                      +.+|++++||||   | ++|.....  +.++..+.+ .|. +|++||+
T Consensus       107 ~~~~sLvLLDEp~~gT~~lD~~~~~--~~il~~l~~~~~~~vlisTH~  152 (222)
T cd03285         107 ATENSLIIIDELGRGTSTYDGFGLA--WAIAEYIATQIKCFCLFATHF  152 (222)
T ss_pred             CCCCeEEEEecCcCCCChHHHHHHH--HHHHHHHHhcCCCeEEEEech
Confidence            368999999999   5 57776653  334455554 356 8888885

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=98.48  E-value=5e-07  Score=94.65  Aligned_cols=30  Identities=40%  Similarity=0.657  Sum_probs=26.9

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ...+|+|+.|+||+|||||+|++++++.+.
T Consensus       213 gi~~p~gVLL~GPPGTGKT~LAraIA~el~  242 (438)
T PTZ00361        213 GIKPPKGVILYGPPGTGKTLLAKAVANETS  242 (438)
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence            346789999999999999999999999775

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=98.48  E-value=5.2e-07  Score=89.25  Aligned_cols=40  Identities=25%  Similarity=0.235  Sum_probs=35.7

Q ss_pred             CCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecC
Q 012882          157 GASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSN  196 (454)
Q Consensus       157 ~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN  196 (454)
                      +|++||+|||+ ++|+.....+.++|.++.+...+|++||+
T Consensus       192 ~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~  232 (276)
T cd03241         192 AVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHL  232 (276)
T ss_pred             CCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEech
Confidence            99999999999 89999999999999998653338899987

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=98.47  E-value=9.1e-07  Score=88.84  Aligned_cols=58  Identities=16%  Similarity=0.207  Sum_probs=39.9

Q ss_pred             ceeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882            2 DVSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .|.++|+|-+++.-.+.=.    -.+.+..++.+    ...|..++|+||+|+||||++++++..+
T Consensus        10 ~w~~kyrP~~~~~~~~~~~----~~~~l~~~~~~----~~~~~~lll~G~~G~GKT~la~~l~~~~   67 (316)
T PHA02544         10 MWEQKYRPSTIDECILPAA----DKETFKSIVKK----GRIPNMLLHSPSPGTGKTTVAKALCNEV   67 (316)
T ss_pred             cceeccCCCcHHHhcCcHH----HHHHHHHHHhc----CCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence            4889999998888765111    11233344332    1345667779999999999999998765

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=98.47  E-value=6.3e-07  Score=95.86  Aligned_cols=29  Identities=38%  Similarity=0.638  Sum_probs=25.9

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ...|+|++|+||+|||||+|++++++...
T Consensus        85 ~~~~~giLL~GppGtGKT~la~alA~~~~  113 (495)
T TIGR01241        85 AKIPKGVLLVGPPGTGKTLLAKAVAGEAG  113 (495)
T ss_pred             CCCCCcEEEECCCCCCHHHHHHHHHHHcC
Confidence            45789999999999999999999998663

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>CHL00176 ftsH cell division protein; Validated

Probab=98.46  E-value=6.3e-07  Score=98.14  Aligned_cols=28  Identities=39%  Similarity=0.681  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ...|+|++|+||+|+|||+|++++++..
T Consensus       213 ~~~p~gVLL~GPpGTGKT~LAralA~e~  240 (638)
T CHL00176        213 AKIPKGVLLVGPPGTGKTLLAKAIAGEA  240 (638)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            3568999999999999999999999865

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=98.45  E-value=6.9e-07  Score=100.14  Aligned_cols=42  Identities=26%  Similarity=0.357  Sum_probs=35.8

Q ss_pred             cCCcEEEeeCCC-CCCHHHHHHHH-HHHHHHHhCCc-EEEEecCC
Q 012882          156 RGASILCFDEIQ-TVDVFAIVALS-GIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       156 ~~p~lL~LDEp~-~lD~~~a~~L~-~ll~~L~~~G~-vlV~ThN~  197 (454)
                      .+|.|++||||+ ++|+.+...+. .++..+.+.|. +|++||+.
T Consensus       406 ~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~  450 (782)
T PRK00409        406 DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYK  450 (782)
T ss_pred             CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChH
Confidence            579999999999 99999888774 57888888887 88889884

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=98.45  E-value=8.9e-07  Score=99.11  Aligned_cols=83  Identities=23%  Similarity=0.398  Sum_probs=49.9

Q ss_pred             cCCcEEEeeCCCCC--------C-HHHHHHHHHHHHHHH---h-CCcEEEEecCCC----ccchhcCCchhhhhHHH---
Q 012882          156 RGASILCFDEIQTV--------D-VFAIVALSGIVSRLL---S-TGTVLVATSNRA----PWDLNQDGMQREIFQKL---  215 (454)
Q Consensus       156 ~~p~lL~LDEp~~l--------D-~~~a~~L~~ll~~L~---~-~G~vlV~ThN~~----P~dLy~~~l~r~~F~~~---  215 (454)
                      ..|.||+|||...+        + ......+..++..+-   . .++++|+|+|++    |+-+.++++++..++|.   
T Consensus       545 ~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~  624 (733)
T TIGR01243       545 AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDE  624 (733)
T ss_pred             cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCH
Confidence            46999999998621        1 123345556666653   2 345888888875    44455566666554432   


Q ss_pred             ---HHHHHhhccccccCCchhhhhhc
Q 012882          216 ---VAKLEKHCEIIPIGSEVDYRRLI  238 (454)
Q Consensus       216 ---I~~L~~~~~vv~l~~~~DyR~~~  238 (454)
                         ..+++.+.+-+.++...|+....
T Consensus       625 ~~R~~i~~~~~~~~~~~~~~~l~~la  650 (733)
T TIGR01243       625 EARKEIFKIHTRSMPLAEDVDLEELA  650 (733)
T ss_pred             HHHHHHHHHHhcCCCCCccCCHHHHH
Confidence               44555555666666666776543

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.43  E-value=2.1e-06  Score=74.22  Aligned_cols=44  Identities=23%  Similarity=0.277  Sum_probs=31.7

Q ss_pred             cCCcEEEeeCCCCCCHHHHHHHHHHHHHHHh-----CCcEEEEecCCCc
Q 012882          156 RGASILCFDEIQTVDVFAIVALSGIVSRLLS-----TGTVLVATSNRAP  199 (454)
Q Consensus       156 ~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~-----~G~vlV~ThN~~P  199 (454)
                      .++.+|++||++.++......+..++..+..     .+..+|+|+|..+
T Consensus        83 ~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~  131 (151)
T cd00009          83 AKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL  131 (151)
T ss_pred             CCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence            5789999999997666667777788877754     4565556656544

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=98.43  E-value=9.8e-07  Score=100.04  Aligned_cols=46  Identities=24%  Similarity=0.350  Sum_probs=40.9

Q ss_pred             hhhcc---CCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          152 HADQR---GASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       152 rAL~~---~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      ++|+.   +|++++||||+ +||+.++..|.++|.++.+.|. |||+|||.
T Consensus       841 ~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~  891 (924)
T TIGR00630       841 KELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNL  891 (924)
T ss_pred             HHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            46665   59999999999 8999999999999999988877 89999984

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=98.42  E-value=6.9e-07  Score=85.06  Aligned_cols=47  Identities=23%  Similarity=0.369  Sum_probs=35.0

Q ss_pred             cCCcEEEeeCCCCCCH--HHHHHHHHHHHHHHhCCcEEEEecCCCccch
Q 012882          156 RGASILCFDEIQTVDV--FAIVALSGIVSRLLSTGTVLVATSNRAPWDL  202 (454)
Q Consensus       156 ~~p~lL~LDEp~~lD~--~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dL  202 (454)
                      .++++|++||.+.++.  .....|..++..+.+.+..+|+|++..|.++
T Consensus        89 ~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~  137 (226)
T TIGR03420        89 EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQL  137 (226)
T ss_pred             ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHC
Confidence            3578999999995443  4477888899888777676777777766554

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=1.8e-06  Score=83.18  Aligned_cols=117  Identities=30%  Similarity=0.367  Sum_probs=73.6

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS  118 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~  118 (454)
                      ...+|+|+.||||+|+|||.+.++.++....   --.||...+..+.   .++.-                         
T Consensus       207 gidppkgvllygppgtgktl~aravanrtda---cfirvigselvqk---yvgeg-------------------------  255 (435)
T KOG0729|consen  207 GIDPPKGVLLYGPPGTGKTLCARAVANRTDA---CFIRVIGSELVQK---YVGEG-------------------------  255 (435)
T ss_pred             CCCCCCceEEeCCCCCchhHHHHHHhcccCc---eEEeehhHHHHHH---Hhhhh-------------------------
Confidence            5678999999999999999999999987642   2245544333221   11110                         


Q ss_pred             HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-----------CCCHHHHHHHHHHHHHHH--
Q 012882          119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-----------TVDVFAIVALSGIVSRLL--  185 (454)
Q Consensus       119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-----------~lD~~~a~~L~~ll~~L~--  185 (454)
                               .+      +-..+.++|+.         ++++|++|||..           +-|-.-+.-+.+++..|-  
T Consensus       256 ---------ar------mvrelf~mart---------kkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgf  311 (435)
T KOG0729|consen  256 ---------AR------MVRELFEMART---------KKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGF  311 (435)
T ss_pred             ---------HH------HHHHHHHHhcc---------cceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCC
Confidence                     00      00011223332         679999999985           234555667777777773  


Q ss_pred             -hCCc--EEEEecCCC----ccchhcCCchhhh
Q 012882          186 -STGT--VLVATSNRA----PWDLNQDGMQREI  211 (454)
Q Consensus       186 -~~G~--vlV~ThN~~----P~dLy~~~l~r~~  211 (454)
                       .+|.  |+++| ||+    |+-|.++++.|+.
T Consensus       312 dprgnikvlmat-nrpdtldpallrpgrldrkv  343 (435)
T KOG0729|consen  312 DPRGNIKVLMAT-NRPDTLDPALLRPGRLDRKV  343 (435)
T ss_pred             CCCCCeEEEeec-CCCCCcCHhhcCCcccccce
Confidence             2454  66666 665    6777788888753

>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=9e-07  Score=85.05  Aligned_cols=143  Identities=21%  Similarity=0.320  Sum_probs=85.8

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHH-HHHHHHHhhhhhcccchhhhhhccccCCCCC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKI-NEHMHRLWKNQVAEKSLRSSISGWITNLPFD  117 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~-~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~  117 (454)
                      ...+|+|+.+|||+|+|||.+.++.+......           |..-. .+.+...   ++.                  
T Consensus       201 gi~pPKGvLmYGPPGTGKTlmARAcAaqT~aT-----------FLKLAgPQLVQMf---IGd------------------  248 (424)
T KOG0652|consen  201 GIRPPKGVLMYGPPGTGKTLMARACAAQTNAT-----------FLKLAGPQLVQMF---IGD------------------  248 (424)
T ss_pred             CCCCCCceEeeCCCCCcHHHHHHHHHHhccch-----------HHHhcchHHHhhh---hcc------------------
Confidence            56789999999999999999999987765321           11000 0000000   000                  


Q ss_pred             hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC--C---------CCHHHHHHHHHHHHHHH-
Q 012882          118 SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ--T---------VDVFAIVALSGIVSRLL-  185 (454)
Q Consensus       118 ~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~--~---------lD~~~a~~L~~ll~~L~-  185 (454)
                               +.++     ..+ ...+|++         +.|.|+++||..  +         -|..-+.-+.++|..|- 
T Consensus       249 ---------GAkL-----VRD-AFaLAKE---------kaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDG  304 (424)
T KOG0652|consen  249 ---------GAKL-----VRD-AFALAKE---------KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG  304 (424)
T ss_pred             ---------hHHH-----HHH-HHHHhhc---------cCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcC
Confidence                     0000     001 1334544         569999999986  3         24444555666666662 


Q ss_pred             -h--CCcEEEEecCCC----ccchhcCCchhhhhHH------HHHHHHhhccccccCCchhhhhh
Q 012882          186 -S--TGTVLVATSNRA----PWDLNQDGMQREIFQK------LVAKLEKHCEIIPIGSEVDYRRL  237 (454)
Q Consensus       186 -~--~G~vlV~ThN~~----P~dLy~~~l~r~~F~~------~I~~L~~~~~vv~l~~~~DyR~~  237 (454)
                       .  ..+-+|+..||.    |+-|..+++.|+.-.|      ...+++-|.+-+.++..++|-..
T Consensus       305 Fss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeEL  369 (424)
T KOG0652|consen  305 FSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEEL  369 (424)
T ss_pred             CCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHH
Confidence             1  234566666764    8888889999876544      24556667777777777777654

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=1e-06  Score=94.51  Aligned_cols=145  Identities=21%  Similarity=0.287  Sum_probs=89.9

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS  118 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~  118 (454)
                      +.+.+.|+.||||+|||||.|..+++...+-   .-..|.+.+.   +.+-|+.-.|.                      
T Consensus       697 plr~~~giLLyGppGcGKT~la~a~a~~~~~---~fisvKGPEl---L~KyIGaSEq~----------------------  748 (952)
T KOG0735|consen  697 PLRLRTGILLYGPPGCGKTLLASAIASNSNL---RFISVKGPEL---LSKYIGASEQN----------------------  748 (952)
T ss_pred             CcccccceEEECCCCCcHHHHHHHHHhhCCe---eEEEecCHHH---HHHHhcccHHH----------------------
Confidence            4456899999999999999999999886641   1223322221   12222221100                      


Q ss_pred             HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC------CCCH--HHHHHHHHHHHHHHh----
Q 012882          119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ------TVDV--FAIVALSGIVSRLLS----  186 (454)
Q Consensus       119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~------~lD~--~~a~~L~~ll~~L~~----  186 (454)
                                       ..+ +.  .       ||-...|+||+||||.      |.|.  .+-+.+.++|.+|-.    
T Consensus       749 -----------------vR~-lF--~-------rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl  801 (952)
T KOG0735|consen  749 -----------------VRD-LF--E-------RAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGL  801 (952)
T ss_pred             -----------------HHH-HH--H-------HhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccccc
Confidence                             000 01  1       1112679999999996      2332  133467778888742    


Q ss_pred             CCcEEEEecCCC----ccchhcCCchhhhhHHH------HHHHHhhccccccCCchhhhhhc
Q 012882          187 TGTVLVATSNRA----PWDLNQDGMQREIFQKL------VAKLEKHCEIIPIGSEVDYRRLI  238 (454)
Q Consensus       187 ~G~vlV~ThN~~----P~dLy~~~l~r~~F~~~------I~~L~~~~~vv~l~~~~DyR~~~  238 (454)
                      .|+.+++...|+    |+-|.+++++|-.++|+      +++++.-..-+.++...|+....
T Consensus       802 ~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a  863 (952)
T KOG0735|consen  802 DGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLA  863 (952)
T ss_pred             ceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHh
Confidence            367444444443    77888899999888764      56777777777788888887643

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.41  E-value=1.8e-06  Score=76.69  Aligned_cols=45  Identities=18%  Similarity=0.196  Sum_probs=30.9

Q ss_pred             cCCcEEEeeCCC-CCCH----------HHHHHHHHHHHHHHhCCc-EEEEecCCCcc
Q 012882          156 RGASILCFDEIQ-TVDV----------FAIVALSGIVSRLLSTGT-VLVATSNRAPW  200 (454)
Q Consensus       156 ~~p~lL~LDEp~-~lD~----------~~a~~L~~ll~~L~~~G~-vlV~ThN~~P~  200 (454)
                      .+++++++||++ .++.          .....+.+++..+.+.|. +++++|.....
T Consensus        84 ~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~  140 (165)
T cd01120          84 GGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD  140 (165)
T ss_pred             CCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence            689999999999 3333          335667777766666677 67777665433

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=98.40  E-value=1.6e-06  Score=98.53  Aligned_cols=46  Identities=22%  Similarity=0.307  Sum_probs=42.1

Q ss_pred             hhhccCC---cEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          152 HADQRGA---SILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       152 rAL~~~p---~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      ++|+.+|   +|++||||+ +||+.+...|.++|.++.++|. ||++|||.
T Consensus       843 raL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~  893 (943)
T PRK00349        843 KELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNL  893 (943)
T ss_pred             HHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence            5778888   999999999 8999999999999999988877 99999984

>PRK04195 replication factor C large subunit; Provisional

Probab=98.40  E-value=8.9e-07  Score=94.43  Aligned_cols=63  Identities=24%  Similarity=0.304  Sum_probs=44.4

Q ss_pred             CceeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882            1 MDVSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      |.|.++|+|.+++.-.|    .=...+.+..++.....+ .+++.++|+||+|+||||++++++..+.
T Consensus         2 ~~W~eKyrP~~l~dlvg----~~~~~~~l~~~l~~~~~g-~~~~~lLL~GppG~GKTtla~ala~el~   64 (482)
T PRK04195          2 MPWVEKYRPKTLSDVVG----NEKAKEQLREWIESWLKG-KPKKALLLYGPPGVGKTSLAHALANDYG   64 (482)
T ss_pred             CCchhhcCCCCHHHhcC----CHHHHHHHHHHHHHHhcC-CCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            68999999999988655    111113344444322111 2378999999999999999999988763

>CHL00195 ycf46 Ycf46; Provisional

Probab=98.39  E-value=7.1e-07  Score=94.83  Aligned_cols=30  Identities=30%  Similarity=0.552  Sum_probs=26.8

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      +.+.|+|+.|+||+|||||++.+++++...
T Consensus       255 gl~~pkGILL~GPpGTGKTllAkaiA~e~~  284 (489)
T CHL00195        255 GLPTPRGLLLVGIQGTGKSLTAKAIANDWQ  284 (489)
T ss_pred             CCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence            346799999999999999999999999764

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=98.35  E-value=2.6e-07  Score=87.84  Aligned_cols=42  Identities=19%  Similarity=0.342  Sum_probs=32.8

Q ss_pred             cCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 012882          156 RGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       156 ~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      ..++++||||+. .||...+..+.++|..+.+...+||+||+.
T Consensus       157 ~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~  199 (220)
T PF02463_consen  157 KPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNP  199 (220)
T ss_dssp             S--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-H
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc
Confidence            678999999999 899999999999999987654599999873

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.34  E-value=3.6e-07  Score=96.87  Aligned_cols=58  Identities=14%  Similarity=0.264  Sum_probs=41.5

Q ss_pred             eeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882            3 VSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      |..+|+|.+++.-.|.  +.+  .+.+.+.+..    ...|.++.|+||+|+||||++++|+..+.
T Consensus         4 l~~kyRP~~~~divGq--~~i--~~~L~~~i~~----~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~   61 (472)
T PRK14962          4 LYRKYRPKTFSEVVGQ--DHV--KKLIINALKK----NSISHAYIFAGPRGTGKTTVARILAKSLN   61 (472)
T ss_pred             hHHHHCCCCHHHccCc--HHH--HHHHHHHHHc----CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            7889999999998772  111  1223333322    23567899999999999999999988764

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=98.34  E-value=2.7e-06  Score=81.34  Aligned_cols=42  Identities=17%  Similarity=0.196  Sum_probs=35.2

Q ss_pred             cCCcEEEeeCCC-CCCHHHHHHHHHH-HHHHHhC-Cc-EEEEecCC
Q 012882          156 RGASILCFDEIQ-TVDVFAIVALSGI-VSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       156 ~~p~lL~LDEp~-~lD~~~a~~L~~l-l~~L~~~-G~-vlV~ThN~  197 (454)
                      .++.+++||||. ++++.+...+... ++.|.+. |. ++++||+.
T Consensus       108 ~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~  153 (218)
T cd03286         108 TPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYH  153 (218)
T ss_pred             CCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence            679999999999 8999987777766 6777765 77 99999985

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=98.30  E-value=1.7e-06  Score=86.65  Aligned_cols=57  Identities=21%  Similarity=0.178  Sum_probs=37.9

Q ss_pred             eeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882            3 VSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      |.++|+|.+++.-.|.-    .-.+.+..++..     .....++|+||+|+||||+++.+++.+.
T Consensus         7 w~~kyrP~~~~~~~g~~----~~~~~l~~~i~~-----~~~~~~ll~G~~G~GKt~~~~~l~~~l~   63 (319)
T PRK00440          7 WVEKYRPRTLDEIVGQE----EIVERLKSYVKE-----KNMPHLLFAGPPGTGKTTAALALARELY   63 (319)
T ss_pred             cchhhCCCcHHHhcCcH----HHHHHHHHHHhC-----CCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence            99999998777654311    001223333322     1223589999999999999999998764

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=98.30  E-value=3e-06  Score=81.13  Aligned_cols=45  Identities=22%  Similarity=0.393  Sum_probs=36.0

Q ss_pred             cCCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEecCCCcc
Q 012882          156 RGASILCFDEIQTVDVFAIVALSGIVSRLLSTGT-VLVATSNRAPW  200 (454)
Q Consensus       156 ~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~P~  200 (454)
                      .++++|++||.+.++......|..++..+.+.|. ++++|++.+|.
T Consensus        89 ~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~  134 (227)
T PRK08903         89 PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPL  134 (227)
T ss_pred             ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence            3578999999997777778889999988887777 67777776553

>TIGR03689 pup_AAA proteasome ATPase

Probab=98.30  E-value=1.8e-06  Score=91.93  Aligned_cols=29  Identities=34%  Similarity=0.622  Sum_probs=26.4

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ..+|+|++|+||+|||||++.+++++.+.
T Consensus       213 l~~p~GILLyGPPGTGKT~LAKAlA~eL~  241 (512)
T TIGR03689       213 LKPPKGVLLYGPPGCGKTLIAKAVANSLA  241 (512)
T ss_pred             CCCCcceEEECCCCCcHHHHHHHHHHhhc
Confidence            45789999999999999999999999774

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=1.4e-06  Score=85.58  Aligned_cols=30  Identities=40%  Similarity=0.643  Sum_probs=27.3

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ...+|+|++||||+|+|||.+.++++....
T Consensus       162 gIk~Pkg~ll~GppGtGKTlla~~Vaa~mg  191 (388)
T KOG0651|consen  162 GIKPPKGLLLYGPPGTGKTLLARAVAATMG  191 (388)
T ss_pred             CCCCCceeEEeCCCCCchhHHHHHHHHhcC
Confidence            567899999999999999999999988764

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.28  E-value=1.2e-06  Score=99.96  Aligned_cols=159  Identities=17%  Similarity=0.207  Sum_probs=102.0

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH--HH-HHHHHHHhhh--hhcccchhhhh-hccccC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML--KI-NEHMHRLWKN--QVAEKSLRSSI-SGWITN  113 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~--~~-~~~i~~~~~~--~~~~~t~~e~l-~~~~~~  113 (454)
                      .++++-+.+.|++|||||||+++++|.++......+++++++.-.  .. ++.+.+..+.  ..+.+|+++.+ |...-.
T Consensus       138 ~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck  217 (1391)
T KOG0065|consen  138 IKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCK  217 (1391)
T ss_pred             EcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhcc
Confidence            356777999999999999999999998864434445777765321  11 2334455444  56788999887 332211


Q ss_pred             CC---CC-hH-------HHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHH
Q 012882          114 LP---FD-SK-------VMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAI  174 (454)
Q Consensus       114 ~~---~~-~~-------~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a  174 (454)
                      .+   .+ .+       ..+.++..+++....+. -.-....+.+++++       .+++.++.++|.||++ +||..++
T Consensus       218 ~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT-~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTa  296 (1391)
T KOG0065|consen  218 GPGSRYDEVSRREKLAAMTDYLLKILGLDHCADT-LVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTA  296 (1391)
T ss_pred             CCccccccccHHHHHHHHHHHHHHHhCchhhccc-eecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHH
Confidence            11   11 12       23456666666442110 00122334445554       3778999999999999 9999999


Q ss_pred             HHHHHHHHHHHhC-Cc-EEEEecCCCc
Q 012882          175 VALSGIVSRLLST-GT-VLVATSNRAP  199 (454)
Q Consensus       175 ~~L~~ll~~L~~~-G~-vlV~ThN~~P  199 (454)
                      -++.+.++.+... +. ++|+-+...|
T Consensus       297 l~iik~lr~~a~~~~~t~~vsi~Q~s~  323 (1391)
T KOG0065|consen  297 FQIIKALRQLAHITGATALVSILQPSP  323 (1391)
T ss_pred             HHHHHHHHHHHhhhcceEEEEeccCCh
Confidence            9999999998754 44 5555555443

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=1e-06  Score=94.47  Aligned_cols=143  Identities=23%  Similarity=0.323  Sum_probs=89.7

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCChHH
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV  120 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~~~  120 (454)
                      .-|+|+.|+||+|+|||+|.++.+|...-+.   ..+.+.+|.. +.-.++.-                          +
T Consensus       181 kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPF---f~iSGS~FVe-mfVGvGAs--------------------------R  230 (596)
T COG0465         181 KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF---FSISGSDFVE-MFVGVGAS--------------------------R  230 (596)
T ss_pred             ccccceeEecCCCCCcHHHHHHHhcccCCCc---eeccchhhhh-hhcCCCcH--------------------------H
Confidence            5799999999999999999999999875221   1222233321 11000000                          0


Q ss_pred             HHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCH----------HHHHHHHHHHHHHH--h-
Q 012882          121 MEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDV----------FAIVALSGIVSRLL--S-  186 (454)
Q Consensus       121 ~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~----------~~a~~L~~ll~~L~--~-  186 (454)
                      ++               + +..-|++         +.|+|+++||+. +-..          .-...|.+++.++=  . 
T Consensus       231 VR---------------d-LF~qAkk---------~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~  285 (596)
T COG0465         231 VR---------------D-LFEQAKK---------NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG  285 (596)
T ss_pred             HH---------------H-HHHHhhc---------cCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC
Confidence            00               0 0111222         459999999996 2111          11234666666662  2 


Q ss_pred             -CCcEEEEecCCC----ccchhcCCchhhhhHHH------HHHHHhhccccccCCchhhhhhc
Q 012882          187 -TGTVLVATSNRA----PWDLNQDGMQREIFQKL------VAKLEKHCEIIPIGSEVDYRRLI  238 (454)
Q Consensus       187 -~G~vlV~ThN~~----P~dLy~~~l~r~~F~~~------I~~L~~~~~vv~l~~~~DyR~~~  238 (454)
                       .|+++++.+||+    |+-|.++++.|+...+.      -.+++-|.+-+.++..+|+....
T Consensus       286 ~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iA  348 (596)
T COG0465         286 NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIA  348 (596)
T ss_pred             CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHh
Confidence             467888999998    78888899988766532      35677777788888888998743

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=98.22  E-value=2.9e-06  Score=93.05  Aligned_cols=58  Identities=22%  Similarity=0.286  Sum_probs=39.4

Q ss_pred             eeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882            3 VSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      +.++|+|.+++.-.|.=  .+  .+.+.+++..    ...+..+.|+|+.|+||||+.++|+..+.
T Consensus         6 LarKYRPqtFdEVIGQe--~V--v~~L~~aL~~----gRL~HAyLFtGPpGvGKTTlAriLAKaLn   63 (830)
T PRK07003          6 LARKWRPKDFASLVGQE--HV--VRALTHALDG----GRLHHAYLFTGTRGVGKTTLSRIFAKALN   63 (830)
T ss_pred             HHHHhCCCcHHHHcCcH--HH--HHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            56789999998876510  00  0123333332    13467888999999999999999988664

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=98.22  E-value=2.3e-06  Score=89.35  Aligned_cols=165  Identities=15%  Similarity=0.137  Sum_probs=87.9

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhc-ccchhhhhh-----ccccC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVA-EKSLRSSIS-----GWITN  113 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~-~~t~~e~l~-----~~~~~  113 (454)
                      ..++.-+.|.||||||||+|.++|.|.-|  +.. +..+-..     ...+.+++|..+- ..|.++.+.     .....
T Consensus       505 i~~G~hLLItGPNGCGKSSLfRILggLWP--vy~-g~L~~P~-----~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~  576 (728)
T KOG0064|consen  505 IEPGMHLLITGPNGCGKSSLFRILGGLWP--VYN-GLLSIPR-----PNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKR  576 (728)
T ss_pred             ecCCceEEEECCCCccHHHHHHHHhccCc--ccC-CeeecCC-----CcceEeccCCCccCcCcccceeecCCcHHHHHh
Confidence            35567799999999999999999999776  211 1111110     1124455544211 112222210     00011


Q ss_pred             CCCChHHHHHHHHHHhhhhH---HhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC---CCCHHHHHHHHHH
Q 012882          114 LPFDSKVMEWVAAEEKYKQE---VQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ---TVDVFAIVALSGI  180 (454)
Q Consensus       114 ~~~~~~~~e~ll~~~~l~~~---~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~---~lD~~~a~~L~~l  180 (454)
                      ..+.+...+.++....+..-   ...-+.+....+.++++.       |.+.++|+.-+|||.|   ..|+..     .+
T Consensus       577 kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~-----~i  651 (728)
T KOG0064|consen  577 KGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEG-----KI  651 (728)
T ss_pred             cCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHH-----HH
Confidence            12222334444444444321   111233344444555543       6778999999999999   367654     34


Q ss_pred             HHHHHhCCc-EEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCchhhhh
Q 012882          181 VSRLLSTGT-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRR  236 (454)
Q Consensus       181 l~~L~~~G~-vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~DyR~  236 (454)
                      ++.....|. .|-+|| ||                  .+.+-|...++.++..-|+.
T Consensus       652 ~~~ak~~gi~llsith-rp------------------slwk~h~~ll~~dg~g~~q~  689 (728)
T KOG0064|consen  652 FQAAKDAGISLLSITH-RP------------------SLWKYHTHLLEFDGEGGWQF  689 (728)
T ss_pred             HHHHHhcCceEEEeec-Cc------------------cHHHHHHHHHhccCCCCeee
Confidence            566666788 444555 42                  23445556666677655654

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.21  E-value=1.3e-05  Score=73.86  Aligned_cols=43  Identities=14%  Similarity=0.156  Sum_probs=34.9

Q ss_pred             cCCcEEEeeCCC-CCC---HHHHHHHHHHHHHHHhCCc-EEEEecCCC
Q 012882          156 RGASILCFDEIQ-TVD---VFAIVALSGIVSRLLSTGT-VLVATSNRA  198 (454)
Q Consensus       156 ~~p~lL~LDEp~-~lD---~~~a~~L~~ll~~L~~~G~-vlV~ThN~~  198 (454)
                      .+|+++++|||+ .+|   ......+.+++..+.+.|+ +++++|+..
T Consensus        94 ~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~  141 (187)
T cd01124          94 FKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSG  141 (187)
T ss_pred             hCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEecccc
Confidence            579999999999 677   6677788889999988888 666776543

A related protein is found in archaea.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=98.19  E-value=4.4e-06  Score=93.60  Aligned_cols=30  Identities=37%  Similarity=0.634  Sum_probs=26.7

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ...+|+|++|+||+|||||||++++++.+.
T Consensus       208 gi~~~~giLL~GppGtGKT~laraia~~~~  237 (733)
T TIGR01243       208 GIEPPKGVLLYGPPGTGKTLLAKAVANEAG  237 (733)
T ss_pred             CCCCCceEEEECCCCCChHHHHHHHHHHhC
Confidence            346789999999999999999999998774

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.19  E-value=2.7e-05  Score=66.38  Aligned_cols=26  Identities=27%  Similarity=0.312  Sum_probs=23.7

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      +..++|+||+|+||||++..++..+.
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~   27 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELG   27 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccC
Confidence            46799999999999999999999875

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=98.18  E-value=2e-06  Score=84.58  Aligned_cols=59  Identities=17%  Similarity=0.211  Sum_probs=38.1

Q ss_pred             ceeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882            2 DVSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATEG   69 (454)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~   69 (454)
                      -|+++|+|..+..-.+        ++.....+.+.... ....-+.+|||+|+|||+...+|+..+-+
T Consensus        25 swteKYrPkt~de~~g--------Qe~vV~~L~~a~~~-~~lp~~LFyGPpGTGKTStalafar~L~~   83 (346)
T KOG0989|consen   25 SWTEKYRPKTFDELAG--------QEHVVQVLKNALLR-RILPHYLFYGPPGTGKTSTALAFARALNC   83 (346)
T ss_pred             chHHHhCCCcHHhhcc--------hHHHHHHHHHHHhh-cCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence            4788888888877654        22221111111001 23456889999999999999999987753

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=4.8e-06  Score=90.19  Aligned_cols=84  Identities=17%  Similarity=0.276  Sum_probs=56.7

Q ss_pred             cCCcEEEeeCCCC--------CCHHH--HHHHHHHHHHHH---h---CCcEEEEecCCC----ccchhcCCchhhhhH--
Q 012882          156 RGASILCFDEIQT--------VDVFA--IVALSGIVSRLL---S---TGTVLVATSNRA----PWDLNQDGMQREIFQ--  213 (454)
Q Consensus       156 ~~p~lL~LDEp~~--------lD~~~--a~~L~~ll~~L~---~---~G~vlV~ThN~~----P~dLy~~~l~r~~F~--  213 (454)
                      ..|+||+|||...        -|...  -+.+.++|.+|-   +   +++.+|..+|||    |+-|.++++++-.|+  
T Consensus       763 A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~  842 (953)
T KOG0736|consen  763 AAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGP  842 (953)
T ss_pred             cCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecC
Confidence            5799999999852        22222  235666666662   1   356788888986    566666666553332  


Q ss_pred             -----HHHHHHHhhccccccCCchhhhhhcc
Q 012882          214 -----KLVAKLEKHCEIIPIGSEVDYRRLIA  239 (454)
Q Consensus       214 -----~~I~~L~~~~~vv~l~~~~DyR~~~~  239 (454)
                           .-..+|++..+-+.++..+|.+....
T Consensus       843 ~~d~esk~~vL~AlTrkFkLdedVdL~eiAk  873 (953)
T KOG0736|consen  843 NEDAESKLRVLEALTRKFKLDEDVDLVEIAK  873 (953)
T ss_pred             CccHHHHHHHHHHHHHHccCCCCcCHHHHHh
Confidence                 34577888889999999999997653

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.16  E-value=2.8e-06  Score=89.48  Aligned_cols=58  Identities=14%  Similarity=0.206  Sum_probs=40.1

Q ss_pred             eeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882            3 VSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      |..+|+|.+++.-.|.-- .+   ..+.+++..    ...+..+.|+||.|+||||++++|+..+.
T Consensus         8 L~~KyRP~~f~dvVGQe~-iv---~~L~~~i~~----~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln   65 (484)
T PRK14956          8 LSRKYRPQFFRDVIHQDL-AI---GALQNALKS----GKIGHAYIFFGPRGVGKTTIARILAKRLN   65 (484)
T ss_pred             hHHHhCCCCHHHHhChHH-HH---HHHHHHHHc----CCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            667899999988766110 00   123333332    12456789999999999999999998774

>PRK13342 recombination factor protein RarA; Reviewed

Probab=98.16  E-value=1e-05  Score=84.73  Aligned_cols=60  Identities=27%  Similarity=0.461  Sum_probs=40.6

Q ss_pred             eeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882            3 VSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      |.++|+|.+++.-.|.- ..+.....+.+++..     ..+..++|+||+|+|||||+++++....
T Consensus         2 la~~~RP~~l~d~vGq~-~~v~~~~~L~~~i~~-----~~~~~ilL~GppGtGKTtLA~~ia~~~~   61 (413)
T PRK13342          2 LAERMRPKTLDEVVGQE-HLLGPGKPLRRMIEA-----GRLSSMILWGPPGTGKTTLARIIAGATD   61 (413)
T ss_pred             hhhhhCCCCHHHhcCcH-HHhCcchHHHHHHHc-----CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            67889998888765521 122222334444432     2345799999999999999999987653

>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=5.1e-06  Score=81.14  Aligned_cols=30  Identities=40%  Similarity=0.675  Sum_probs=27.4

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ...+|+||.|||++|+|||.|.++.++...
T Consensus       215 GikpPKGVIlyG~PGTGKTLLAKAVANqTS  244 (440)
T KOG0726|consen  215 GIKPPKGVILYGEPGTGKTLLAKAVANQTS  244 (440)
T ss_pred             CCCCCCeeEEeCCCCCchhHHHHHHhcccc
Confidence            457899999999999999999999999875

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=98.15  E-value=6.3e-06  Score=83.83  Aligned_cols=27  Identities=33%  Similarity=0.581  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ......||||+|+|||||.++|++.+.
T Consensus        47 ~l~SmIl~GPPG~GKTTlA~liA~~~~   73 (436)
T COG2256          47 HLHSMILWGPPGTGKTTLARLIAGTTN   73 (436)
T ss_pred             CCceeEEECCCCCCHHHHHHHHHHhhC
Confidence            346789999999999999999999774

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=8.1e-06  Score=87.33  Aligned_cols=30  Identities=37%  Similarity=0.603  Sum_probs=26.2

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ...+|+|+.|+||+|||||+|.++++....
T Consensus       272 ~~~~~~giLl~GpPGtGKT~lAkava~~~~  301 (494)
T COG0464         272 GLRPPKGVLLYGPPGTGKTLLAKAVALESR  301 (494)
T ss_pred             CCCCCCeeEEECCCCCCHHHHHHHHHhhCC
Confidence            346789999999999999999999998553

>PRK13695 putative NTPase; Provisional

Probab=98.12  E-value=1.3e-05  Score=73.57  Aligned_cols=41  Identities=17%  Similarity=0.292  Sum_probs=28.1

Q ss_pred             ccCCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEecC
Q 012882          155 QRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGT-VLVATSN  196 (454)
Q Consensus       155 ~~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN  196 (454)
                      +.+|++|++|||..++..+ ..+.+.+..+.+.|. +|+++|+
T Consensus        94 l~~~~~lllDE~~~~e~~~-~~~~~~l~~~~~~~~~~i~v~h~  135 (174)
T PRK13695         94 LEEADVIIIDEIGKMELKS-PKFVKAVEEVLDSEKPVIATLHR  135 (174)
T ss_pred             cCCCCEEEEECCCcchhhh-HHHHHHHHHHHhCCCeEEEEECc
Confidence            3689999999986544444 345566666666777 6777765

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.12  E-value=6.2e-06  Score=84.83  Aligned_cols=58  Identities=14%  Similarity=0.197  Sum_probs=38.5

Q ss_pred             eeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882            3 VSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      +.++|+|.+++.-.|.=.  +  .+.+.+.+..    ...|..+.|+||.|+||||++++++..+.
T Consensus         6 l~~kyrP~~~~~iiGq~~--~--~~~l~~~~~~----~~~~h~~L~~Gp~G~GKTtla~~la~~l~   63 (363)
T PRK14961          6 LARKWRPQYFRDIIGQKH--I--VTAISNGLSL----GRIHHAWLLSGTRGVGKTTIARLLAKSLN   63 (363)
T ss_pred             HHHHhCCCchhhccChHH--H--HHHHHHHHHc----CCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence            567899988887655100  0  0112233221    13567889999999999999999988664

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=98.12  E-value=1.1e-05  Score=77.54  Aligned_cols=35  Identities=31%  Similarity=0.582  Sum_probs=26.8

Q ss_pred             hhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHH
Q 012882           27 RKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFY   64 (454)
Q Consensus        27 ~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~   64 (454)
                      ..++.+++.   ..+.+.-+.+.|++|+|||+|...|.
T Consensus        12 ~~LD~~l~g---G~~~g~~~~i~G~~GsGKt~l~~~~~   46 (234)
T PRK06067         12 EELDRKLGG---GIPFPSLILIEGDHGTGKSVLSQQFV   46 (234)
T ss_pred             HHHHHhhCC---CCcCCcEEEEECCCCCChHHHHHHHH
Confidence            346666543   34566779999999999999999984

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.11  E-value=4.5e-06  Score=90.42  Aligned_cols=58  Identities=19%  Similarity=0.286  Sum_probs=40.0

Q ss_pred             eeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882            3 VSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      |..+|+|.+++.-.|.  +.+  .+.+.+.+..    ...+..+.|+||.|+||||+.++|+..+.
T Consensus         6 LarKYRPqtFddVIGQ--e~v--v~~L~~al~~----gRLpHA~LFtGP~GvGKTTLAriLAkaLn   63 (700)
T PRK12323          6 LARKWRPRDFTTLVGQ--EHV--VRALTHALEQ----QRLHHAYLFTGTRGVGKTTLSRILAKSLN   63 (700)
T ss_pred             HHHHhCCCcHHHHcCc--HHH--HHHHHHHHHh----CCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence            5678999999887661  000  0123333332    23567889999999999999999998664

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=98.11  E-value=1e-05  Score=89.17  Aligned_cols=28  Identities=36%  Similarity=0.678  Sum_probs=25.6

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ..|+|++|+||+||||||+++++++.+.
T Consensus       183 ~~~~gill~G~~G~GKt~~~~~~a~~~~  210 (644)
T PRK10733        183 KIPKGVLMVGPPGTGKTLLAKAIAGEAK  210 (644)
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHcC
Confidence            5689999999999999999999998774

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.10  E-value=6.7e-06  Score=91.75  Aligned_cols=58  Identities=21%  Similarity=0.282  Sum_probs=39.1

Q ss_pred             eeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882            3 VSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      |.++|+|.+++.-.|.-.  +  .+.+.+++..    ...+..+.|+||.|+||||++++|+..+.
T Consensus         6 LaeKyRP~tFddIIGQe~--I--v~~LknaI~~----~rl~HAyLFtGPpGtGKTTLARiLAk~Ln   63 (944)
T PRK14949          6 LARKWRPATFEQMVGQSH--V--LHALTNALTQ----QRLHHAYLFTGTRGVGKTSLARLFAKGLN   63 (944)
T ss_pred             HHHHhCCCCHHHhcCcHH--H--HHHHHHHHHh----CCCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence            567899988887655100  0  0113333332    13466778999999999999999998775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	454
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 6e-09
 Identities = 76/479 (15%), Positives = 145/479 (30%), Gaps = 159/479 (33%)

Query: 16  VGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHR- 74
           V R   YL   + L  L        PA   + + G +GSGKT +      A +  + ++ 
Sbjct: 131 VSRLQPYLKLRQALLEL-------RPAK-NVLIDGVLGSGKTWV------ALDVCLSYKV 176

Query: 75  -QRFHFH------------EAMLKINEHM-HRLWKNQVAEKSLRSSISGWITNLPFDSKV 120
             +  F             E +L++ + + +++  N  +     S+I      L   S +
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK-----LRIHS-I 230

Query: 121 MEWVA---AEEKYKQ------EVQMKNILPAVAD---KFLV---DQH-ADQRGASILC-- 162
              +      + Y+        VQ      A  +   K L+    +   D   A+     
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 163 --------FDEIQTVDVFAIVALSGIVSRL-----------LSTGTVLVATSNR---APW 200
                       +   +     L      L           LS    ++A S R   A W
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKY-LDCRPQDLPREVLTTNPRRLS----IIAESIRDGLATW 344

Query: 201 D----LNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLIAQRSIDQVHYFWPLDDNA 256
           D    +N D +   I +  +  LE            +YR++  + S+     F P   + 
Sbjct: 345 DNWKHVNCDKLTT-IIESSLNVLE----------PAEYRKMFDRLSV-----F-PPSAHI 387

Query: 257 VRQ-LEAMWCQVTNHFGGKIISSTIPVMFGRTLEVPQSCNGVARFTFEYLCGRPVGAADY 315
               L  +W  V       +++     +   +L        V +   E            
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNK----LHKYSL--------VEKQPKESTIS-------- 427

Query: 316 IAVAHNYHTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLFCSAAS--SIDDLF--- 370
                   ++++     + +++ ++     +++D  YN              +D  F   
Sbjct: 428 ------IPSIYL----ELKVKLENEYALHRSIVDH-YNIPKTFDSDDLIPPYLDQYFYSH 476

Query: 371 --------QGTEEGTLFD--LESFQFETEIEGGKLRRDVLAEGTVSSGGAPAGIVSMLS 419
                   +  E  TLF      F+F   +E  K+R D  A        A   I++ L 
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRF---LE-QKIRHDSTAW------NASGSILNTLQ 525

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 52/325 (16%), Positives = 104/325 (32%), Gaps = 65/325 (20%)

Query: 121 MEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGI 180
           M++   E +Y+     K+IL    D F+ +            FD     D+   +     
Sbjct: 7   MDFETGEHQYQY----KDILSVFEDAFVDN------------FDCKDVQDMPKSILSKEE 50

Query: 181 VSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAK-LEKHCEII--PIGSEVDYRRL 237
           +  ++ +   +  T  R  W L     Q E+ QK V + L  + + +  PI +E     +
Sbjct: 51  IDHIIMSKDAVSGT-LRLFWTLLSK--QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107

Query: 238 IAQRSIDQVHYFW----PLDDNAVRQLEAMWCQVTNHFGGKIISSTIPV--M--FGRT-- 287
           + +  I+Q    +          V +L+    ++         +  + +  +   G+T  
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL-KLRQALLELRPAKNVLIDGVLGSGKTWV 166

Query: 288 -LEVPQSCNGVARFTFE--YL----CGRPVGAAD-----YIAVAHNYHTV--FITNIPVM 333
            L+V  S     +  F+  +L    C  P    +        +  N+ +     +NI + 
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 334 SMRIRDKARRFIT--------LI-DELYN--------HHC-CLFCSAASSIDDLFQGTEE 375
              I+ + RR +         L+   + N          C  L  +    + D       
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 376 GTLFDLESFQFETEIEGGKLRRDVL 400
             +         T  E   L    L
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYL 311

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 4e-04
 Identities = 39/340 (11%), Positives = 81/340 (23%), Gaps = 134/340 (39%)

Query: 82  AMLKINEHMHRLWKN--QVAEKSLRSSISGWITNL---------------PFDSKVME-- 122
             ++  + +   W N   V    L + I   +  L               P  + +    
Sbjct: 335 ESIR--DGLAT-WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391

Query: 123 ----WVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALS 178
               W    +    +V +  ++  +    LV++   +   SI                  
Sbjct: 392 LSLIWFDVIK---SDVMV--VVNKLHKYSLVEKQPKESTISIP----------------- 429

Query: 179 GIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLI 238
                                       +  E+  KL  +   H            R ++
Sbjct: 430 ---------------------------SIYLELKVKLENEYALH------------RSIV 450

Query: 239 AQRSIDQVHYFWPLDDNAVRQLEAMWCQVTNHFGGKIISSTIPVMFGRTLEVPQSCNGVA 298
              +I +    +  DD     L+  +    +H G               L+  +    + 
Sbjct: 451 DHYNIPKT---FDSDDLIPPYLDQYFY---SHIG-------------HHLKNIEHPERMT 491

Query: 299 RFTFEYL---------------CGRPVGAADYIAVAHNYHTVFITNIPVMSMRIRDKARR 343
            F   +L                       + +     Y      N P     +      
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA---- 547

Query: 344 FITLIDELYNHHCCLFCSAASSIDDLFQ---GTEEGTLFD 380
              ++D L      L CS  +   DL +     E+  +F+
Sbjct: 548 ---ILDFLPKIEENLICSKYT---DLLRIALMAEDEAIFE 581

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	454
1g6h_A	257	High-affinity branched-chain amino acid transport	99.76
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.76
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.75
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.75
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.74
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.74
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.74
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.74
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.74
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.73
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.73
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.73
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.72
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.71
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.71
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.71
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.71
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.7
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.7
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.7
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.69
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.69
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.69
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.68
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.67
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.67
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.67
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.66
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.65
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.64
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.64
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.64
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.62
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.6
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.59
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.58
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.58
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.56
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.55
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.54
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.54
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.54
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.53
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.53
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.52
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.52
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.51
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.49
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.49
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.47
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.46
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.45
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.39
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.36
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	99.34
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.34
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.31
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.3
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.26
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.26
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.26
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.25
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.24
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.21
2qgz_A	308	Helicase loader, putative primosome component; str	99.18
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.14
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.13
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.11
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.1
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.08
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.08
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	98.98
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	98.98
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	98.97
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	98.96
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	98.96
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.95
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	98.9
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	98.89
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	98.88
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	98.87
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.87
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	98.87
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	98.86
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.86
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.85
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	98.82
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	98.81
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	98.81
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.8
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.75
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.74
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.73
1e69_A	322	Chromosome segregation SMC protein; structural mai	98.72
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.71
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.71
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.71
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.7
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	98.66
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.65
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.65
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.62
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.62
3bos_A	242	Putative DNA replication factor; P-loop containing	98.62
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.6
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.58
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.58
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.56
3co5_A	143	Putative two-component system transcriptional RES	98.55
2og2_A	359	Putative signal recognition particle receptor; nuc	98.53
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	98.52
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.51
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.49
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.46
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	98.42
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	98.41
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	98.4
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	98.4
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	98.39
2chg_A	226	Replication factor C small subunit; DNA-binding pr	98.37
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.37
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	98.35
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.33
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.33
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	98.32
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	98.31
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.31
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.28
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	98.28
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.28
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.28
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.27
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	98.26
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	98.25
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	98.23
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.2
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	98.19
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.18
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	98.15
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.15
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	98.14
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	98.14
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	98.14
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.14
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	98.14
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	98.13
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	98.13
3pvs_A	447	Replication-associated recombination protein A; ma	98.1
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	98.09
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	98.08
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	98.08
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	98.07
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	98.06
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	98.05
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	98.04
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	98.02
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.0
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.98
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	97.98
2chq_A	319	Replication factor C small subunit; DNA-binding pr	97.97
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.97
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	97.97
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.96
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.92
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	97.92
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.89
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.89
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.88
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.88
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.86
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	97.84
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.82
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	97.76
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.72
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.69
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.63
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.62
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	97.6
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	97.58
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.58
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	97.51
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.51
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.49
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.48
2r44_A	331	Uncharacterized protein; putative ATPase, structur	97.45
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.44
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.42
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	97.42
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.42
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	97.42
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.41
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.39
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.36
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.36
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.35
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.35
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.33
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	97.29
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	97.26
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.25
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.24
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.21
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.2
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.2
3kta_B	173	Chromosome segregation protein SMC; structural mai	97.2
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.2
2fna_A	357	Conserved hypothetical protein; structural genomic	97.2
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.17
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.16
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.15
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.15
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.14
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.12
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.12
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	97.09
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	97.09
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.08
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.05
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.05
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.05
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.04
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.01
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.01
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.98
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.97
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.96
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.95
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.93
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.92
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.91
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.88
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	96.87
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.81
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	96.8
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.79
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	96.77
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	96.75
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	96.74
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.74
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.71
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	96.71
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.68
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.67
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	96.66
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.65
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	96.65
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	96.61
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.6
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.59
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.58
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.57
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.56
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.56
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.55
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.53
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.52
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.52
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.51
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.5
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.5
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	96.49
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.49
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.46
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	96.43
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	96.42
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.41
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.4
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.37
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	96.36
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.34
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.3
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	96.29
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.27
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.27
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	96.23
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.19
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.17
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.16
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.16
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	96.12
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.06
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.05
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.02
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.0
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	95.98
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	95.98
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	95.96
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	95.92
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	95.9
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	95.88
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	95.87
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	95.87
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	95.86
2wji_A	165	Ferrous iron transport protein B homolog; membrane	95.86
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	95.83
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	95.82
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	95.82
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	95.8
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.75
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	95.74
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	95.69
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	95.68
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	95.68
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	95.67
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	95.65
1via_A	175	Shikimate kinase; structural genomics, transferase	95.64
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	95.62
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.61
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	95.57
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	95.54
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	95.54
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	95.54
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.53
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	95.52
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	95.51
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	95.5
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	95.47
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.46
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	95.46
2vli_A	183	Antibiotic resistance protein; transferase, tunica	95.42
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	95.39
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	95.34
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	95.32
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	95.3
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	95.3
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	95.27
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	95.25
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	95.23
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	95.23
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	95.21
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	95.2
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	95.16
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	95.16
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	95.16
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	95.15
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	95.14
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	95.13
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	95.11
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	95.07
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	95.04
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	95.04
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	95.02
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	95.01
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	95.0
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	94.98
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	94.97
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	94.96
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	94.94
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	94.94
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	94.94
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	94.93
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	94.87
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	94.86
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	94.86
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	94.85
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	94.84
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	94.83
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	94.82
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	94.8
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	94.73
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	94.72
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	94.72
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	94.71
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	94.7
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	94.68
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	94.68
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	94.67
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	94.61
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	94.57
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	94.57
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	94.54
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	94.52
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	94.52
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	94.51
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	94.51
2ged_A	193	SR-beta, signal recognition particle receptor beta	94.5
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	94.46
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	94.46
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	94.46
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	94.4
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	94.39
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	94.37
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	94.36
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	94.35
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	94.33
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	94.33
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	94.33
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	94.32
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	94.31
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	94.29
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	94.28
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	94.26
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	94.25
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	94.23
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	94.22
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	94.22
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	94.19
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	94.18
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	94.18
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	94.17
3io5_A	333	Recombination and repair protein; storage dimer, i	94.15
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	94.15
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	94.12
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	94.12
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	94.11
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	94.11
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	94.1
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	94.1
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	94.06
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	94.03
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	94.03
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	94.01
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	94.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	93.98
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	93.98
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	93.96
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	93.94
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	93.93
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	93.91
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	93.91
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	93.89
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	93.88
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	93.87
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	93.87
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	93.86
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	93.82
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	93.8
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	93.79
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	93.76
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	93.76
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	93.75
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	93.75
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	93.74
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	93.7
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	93.69
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	93.64
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	93.63
1nrj_B	218	SR-beta, signal recognition particle receptor beta	93.62
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	93.62
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	93.61
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	93.61
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	93.59
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	93.53
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	93.53
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	93.51
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	93.48
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	93.48
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	93.48
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	93.43
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	93.37
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	93.37
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	93.36
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	93.35
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	93.34
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	93.33
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	93.31
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	93.3
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	93.27
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	93.27
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	93.24
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	93.23
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	93.22
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	93.22
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	93.18
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	93.18
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	93.16
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	93.15
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	93.12
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	93.12
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	93.12
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	93.11
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	93.09
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	93.09
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	93.09
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	93.07
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	93.06
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	93.05
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	93.02
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	93.01
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	92.95
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	92.95
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	92.95
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	92.93
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	92.91
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	92.9
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	92.87
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	92.85
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	92.82
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	92.82
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	92.81
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	92.81
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	92.8
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	92.78
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	92.76
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	92.69
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	92.67
2fh5_B	214	SR-beta, signal recognition particle receptor beta	92.66
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	92.63
3ice_A	422	Transcription termination factor RHO; transcriptio	92.62
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	92.62

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.76  E-value=1.7e-18  Score=167.93  Aligned_cols=157  Identities=15%  Similarity=0.061  Sum_probs=106.9

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-------HHHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-------MLKINEHMHRLWKN--QVAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-------~~~~~~~i~~~~~~--~~~~~t~~e~l~~~  110 (454)
                      .++++-++|+||||||||||+++|+|.+++   ..+.|.+++.       .......++++.|.  ..+.+|+.+++...
T Consensus        30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~  106 (257)
T 1g6h_A           30 VNKGDVTLIIGPNGSGKSTLINVITGFLKA---DEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIG  106 (257)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGG
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHH
Confidence            346778999999999999999999999874   2455555431       11223456677765  45567899988332


Q ss_pred             ccC--C------------CCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCC
Q 012882          111 ITN--L------------PFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEI  166 (454)
Q Consensus       111 ~~~--~------------~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp  166 (454)
                      ...  .            ....   ..+++++..+++....      ......+++++       +||+.+|+||+||||
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEP  180 (257)
T 1g6h_A          107 EICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY------DRKAGELSGGQMKLVEIGRALMTNPKMIVMDEP  180 (257)
T ss_dssp             GTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGT------TSBGGGSCHHHHHHHHHHHHHHTCCSEEEEEST
T ss_pred             HhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhh------CCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            211  0            1111   3455666666663311      11233445444       688899999999999


Q ss_pred             C-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCCCccchhcC
Q 012882          167 Q-TVDVFAIVALSGIVSRLLSTGT-VLVATSNRAPWDLNQD  205 (454)
Q Consensus       167 ~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~P~dLy~~  205 (454)
                      + +||+..+..+.++|.++.++|. ||++||+.....-+++
T Consensus       181 ts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d  221 (257)
T 1g6h_A          181 IAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYID  221 (257)
T ss_dssp             TTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCS
T ss_pred             ccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC
Confidence            9 8999999999999999987777 9999998654443333

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.76  E-value=6.5e-19  Score=172.49  Aligned_cols=157  Identities=16%  Similarity=0.210  Sum_probs=105.5

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--------HHHHHHHHHHHhhhh---hcccchhhhhhc
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--------MLKINEHMHRLWKNQ---VAEKSLRSSISG  109 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--------~~~~~~~i~~~~~~~---~~~~t~~e~l~~  109 (454)
                      ..+.-++|+||||||||||+++|+|.+++   ..+.|.+.+.        .....+.++++.|..   ....|+.+++..
T Consensus        32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p---~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~  108 (275)
T 3gfo_A           32 KRGEVTAILGGNGVGKSTLFQNFNGILKP---SSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSF  108 (275)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHH
Confidence            45778999999999999999999999874   2345554331        123345566666642   234677777732


Q ss_pred             cccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882          110 WITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL  177 (454)
Q Consensus       110 ~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L  177 (454)
                      .......+.    ..+++++..+++....      ......+++++       +||+.+|+||+||||+ +||+..+..+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~------~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i  182 (275)
T 3gfo_A          109 GAVNMKLPEDEIRKRVDNALKRTGIEHLK------DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEI  182 (275)
T ss_dssp             HHHTSCCCHHHHHHHHHHHHHHTTCGGGT------TSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCCchhh------cCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHH
Confidence            222111122    3445566666653321      11223445444       6888999999999999 8999999999


Q ss_pred             HHHHHHHH-hCCc-EEEEecCCCccchhcCC
Q 012882          178 SGIVSRLL-STGT-VLVATSNRAPWDLNQDG  206 (454)
Q Consensus       178 ~~ll~~L~-~~G~-vlV~ThN~~P~dLy~~~  206 (454)
                      .++|.++. +.|. ||++||+.....-++++
T Consensus       183 ~~~l~~l~~~~g~tvi~vtHdl~~~~~~~dr  213 (275)
T 3gfo_A          183 MKLLVEMQKELGITIIIATHDIDIVPLYCDN  213 (275)
T ss_dssp             HHHHHHHHHHHCCEEEEEESCCSSGGGGCSE
T ss_pred             HHHHHHHHhhCCCEEEEEecCHHHHHHhCCE
Confidence            99999997 5577 99999997655545544

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.75  E-value=6.3e-19  Score=171.45  Aligned_cols=150  Identities=13%  Similarity=0.121  Sum_probs=102.3

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-------------------HHHHHHHHHHHhhh--hh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-------------------MLKINEHMHRLWKN--QV   98 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-------------------~~~~~~~i~~~~~~--~~   98 (454)
                      ...++-++|+||||||||||+++|+|.+++.   .+.|.+++.                   .....+.++++.|.  ..
T Consensus        29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~  105 (262)
T 1b0u_A           29 ARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLW  105 (262)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccC
Confidence            3467889999999999999999999998742   345544321                   11234556777665  34


Q ss_pred             cccchhhhhhcc---ccCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCC
Q 012882           99 AEKSLRSSISGW---ITNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEI  166 (454)
Q Consensus        99 ~~~t~~e~l~~~---~~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp  166 (454)
                      +.+|+.+++...   .......  ...+++++..+++....     .......+++++       +||+.+|+||+||||
T Consensus       106 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEP  180 (262)
T 1b0u_A          106 SHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERA-----QGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEP  180 (262)
T ss_dssp             TTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHH-----HTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEEST
T ss_pred             CCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchh-----hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            567888887321   1111111  13445566666653220     111233455554       688999999999999


Q ss_pred             C-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          167 Q-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       167 ~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      + +||+..+..+.++|.++.++|. ||++||+.
T Consensus       181 ts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~  213 (262)
T 1b0u_A          181 TSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM  213 (262)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            9 8999999999999999987776 99999984

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.75  E-value=1.7e-18  Score=168.56  Aligned_cols=149  Identities=15%  Similarity=0.175  Sum_probs=102.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--------HHHHHHHHHHHhhh--hhcccchhhhhhc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--------MLKINEHMHRLWKN--QVAEKSLRSSISG  109 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--------~~~~~~~i~~~~~~--~~~~~t~~e~l~~  109 (454)
                      ...++-++|+||||||||||+++|+|.+++   ..+.|.+++.        .....+.++++.|.  ..+.+|+.+++..
T Consensus        47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~  123 (263)
T 2olj_A           47 IREGEVVVVIGPSGSGKSTFLRCLNLLEDF---DEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITL  123 (263)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHH
T ss_pred             EcCCCEEEEEcCCCCcHHHHHHHHHcCCCC---CCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHH
Confidence            356788999999999999999999999874   2345555431        12334567777765  3456688888732


Q ss_pred             c---ccCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882          110 W---ITNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA  176 (454)
Q Consensus       110 ~---~~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~  176 (454)
                      .   .......  ...+++++..+++....      ......+++++       +||+.+|+||+||||+ +||+..+..
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~------~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~  197 (263)
T 2olj_A          124 APMKVRKWPREKAEAKAMELLDKVGLKDKA------HAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGE  197 (263)
T ss_dssp             HHHHTSCCCHHHHHHHHHHHHHHTTCGGGT------TSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHCCCchHh------cCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHH
Confidence            1   1111111  13445566666653321      11233445544       6888999999999999 899999999


Q ss_pred             HHHHHHHHHhCCc-EEEEecCC
Q 012882          177 LSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       177 L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      +.++|.++.++|. ||++||+.
T Consensus       198 ~~~~l~~l~~~g~tvi~vtHd~  219 (263)
T 2olj_A          198 VLSVMKQLANEGMTMVVVTHEM  219 (263)
T ss_dssp             HHHHHHHHHHTTCEEEEECSCH
T ss_pred             HHHHHHHHHhCCCEEEEEcCCH
Confidence            9999999987777 99999983

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.74  E-value=7.7e-19  Score=177.90  Aligned_cols=149  Identities=13%  Similarity=0.158  Sum_probs=102.4

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---------HHHHHHHHHHHhhh--hhcccchhhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---------MLKINEHMHRLWKN--QVAEKSLRSSIS  108 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---------~~~~~~~i~~~~~~--~~~~~t~~e~l~  108 (454)
                      .+.+.-++|+||||||||||+++|+|..++   ..+.|.+.+.         ....++.++++.|.  ..+.+|+.+++.
T Consensus        51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p---~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~  127 (366)
T 3tui_C           51 VPAGQIYGVIGASGAGKSTLIRCVNLLERP---TEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVA  127 (366)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHH
T ss_pred             EcCCCEEEEEcCCCchHHHHHHHHhcCCCC---CceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHH
Confidence            356788999999999999999999999875   2445555431         11233456666665  345668888773


Q ss_pred             ccc--cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882          109 GWI--TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA  176 (454)
Q Consensus       109 ~~~--~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~  176 (454)
                      ...  ......  ...+++++..+++....      ......|++++       |||+.+|+||+||||+ +||+..+..
T Consensus       128 ~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~------~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~  201 (366)
T 3tui_C          128 LPLELDNTPKDEVKRRVTELLSLVGLGDKH------DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRS  201 (366)
T ss_dssp             HHHHHSCCCHHHHHHHHHHHHHHHTCGGGT------TCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHcCCchHh------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHH
Confidence            221  111111  13455666666664321      11233445554       7889999999999999 899999999


Q ss_pred             HHHHHHHHHh-CCc-EEEEecCC
Q 012882          177 LSGIVSRLLS-TGT-VLVATSNR  197 (454)
Q Consensus       177 L~~ll~~L~~-~G~-vlV~ThN~  197 (454)
                      +.++|.++.+ .|. ||++||+.
T Consensus       202 i~~lL~~l~~~~g~Tii~vTHdl  224 (366)
T 3tui_C          202 ILELLKDINRRLGLTILLITHEM  224 (366)
T ss_dssp             HHHHHHHHHHHSCCEEEEEESCH
T ss_pred             HHHHHHHHHHhCCCEEEEEecCH
Confidence            9999999975 477 99999985

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.74  E-value=4.5e-18  Score=162.78  Aligned_cols=149  Identities=11%  Similarity=0.084  Sum_probs=100.3

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HH---H-HHHHHHHHhhh--hhcccchhhhhh
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------ML---K-INEHMHRLWKN--QVAEKSLRSSIS  108 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~---~-~~~~i~~~~~~--~~~~~t~~e~l~  108 (454)
                      .+++-++|+||||||||||+++|+|.+++   ..+.+.+++.      ..   . ..+.++++.|.  ..+.+|+.+++.
T Consensus        29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~  105 (235)
T 3tif_A           29 KEGEFVSIMGPSGSGKSTMLNIIGCLDKP---TEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVE  105 (235)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHH
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCCCC---CceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHH
Confidence            46788999999999999999999999975   2455555431      01   1 12346777776  345678888873


Q ss_pred             ccccC---CCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHH
Q 012882          109 GWITN---LPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFA  173 (454)
Q Consensus       109 ~~~~~---~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~  173 (454)
                      .....   .....    ..+.+++..+++....     .......+++++       +||+.+|++|+||||+ +||+..
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~  180 (235)
T 3tif_A          106 LPLIFKYRGAMSGEERRKRALECLKMAELEERF-----ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKT  180 (235)
T ss_dssp             HHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG-----TTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHH
T ss_pred             HHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh-----hhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence            22111   01121    2334455555542210     011234455554       6889999999999999 899999


Q ss_pred             HHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          174 IVALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       174 a~~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      +..+.++|.++.++ |. ||++||+.
T Consensus       181 ~~~i~~~l~~l~~~~g~tvi~vtHd~  206 (235)
T 3tif_A          181 GEKIMQLLKKLNEEDGKTVVVVTHDI  206 (235)
T ss_dssp             HHHHHHHHHHHHHHHCCEEEEECSCH
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence            99999999999764 77 99999984

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.74  E-value=1.6e-18  Score=168.03  Aligned_cols=149  Identities=12%  Similarity=0.080  Sum_probs=100.7

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-----HHHHHHHHHHHhhh--hhcccchhhhhhcc--
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-----MLKINEHMHRLWKN--QVAEKSLRSSISGW--  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-----~~~~~~~i~~~~~~--~~~~~t~~e~l~~~--  110 (454)
                      ..++.-++|+||||||||||+++|+|.+++   ..+.|.+.+.     .....+.+++++|.  ....+|+.+++...  
T Consensus        38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~  114 (256)
T 1vpl_A           38 IEEGEIFGLIGPNGAGKTTTLRIISTLIKP---SSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAG  114 (256)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHH
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHH
Confidence            346788999999999999999999999874   2345555431     12233446666665  34556788877221  


Q ss_pred             ccCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882          111 ITNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI  180 (454)
Q Consensus       111 ~~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l  180 (454)
                      .......  ...+++++..+++....      ......+++++       +||+.+|+||+||||+ +||+..+..+.++
T Consensus       115 ~~~~~~~~~~~~~~~~l~~~gL~~~~------~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~  188 (256)
T 1vpl_A          115 FYASSSSEIEEMVERATEIAGLGEKI------KDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKI  188 (256)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHCCGGGG------GSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred             HcCCChHHHHHHHHHHHHHCCCchHh------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHH
Confidence            1111111  12345556666653321      11123444444       6888999999999999 8999999999999


Q ss_pred             HHHHHhCCc-EEEEecCC
Q 012882          181 VSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       181 l~~L~~~G~-vlV~ThN~  197 (454)
                      |.++.+.|. ||++||+.
T Consensus       189 l~~l~~~g~tiiivtHd~  206 (256)
T 1vpl_A          189 LKQASQEGLTILVSSHNM  206 (256)
T ss_dssp             HHHHHHTTCEEEEEECCH
T ss_pred             HHHHHhCCCEEEEEcCCH
Confidence            999987777 89999984

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.74  E-value=3.7e-18  Score=162.18  Aligned_cols=148  Identities=14%  Similarity=0.128  Sum_probs=99.0

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---------HHHH-HHHHHHhhh--hhcccchhhhhh
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---------LKIN-EHMHRLWKN--QVAEKSLRSSIS  108 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---------~~~~-~~i~~~~~~--~~~~~t~~e~l~  108 (454)
                      .+++-++|+||||||||||+++|+|.+++   ..+.+.+++..         .... +.++++.|.  ..+.+|+.+++.
T Consensus        28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~  104 (224)
T 2pcj_A           28 KKGEFVSIIGASGSGKSTLLYILGLLDAP---TEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVI  104 (224)
T ss_dssp             ETTCEEEEEECTTSCHHHHHHHHTTSSCC---SEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHH
Confidence            45778999999999999999999999874   23455554311         1122 456666665  344567777762


Q ss_pred             cc--ccCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882          109 GW--ITNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA  176 (454)
Q Consensus       109 ~~--~~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~  176 (454)
                      ..  .......  ...+++++..+++...      .......+++++       +||+.+|++|+||||+ +||+..+..
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~  178 (224)
T 2pcj_A          105 VPMLKMGKPKKEAKERGEYLLSELGLGDK------LSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKR  178 (224)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHTTCTTC------TTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHH
T ss_pred             hHHHHcCCCHHHHHHHHHHHHHHcCCchh------hhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHH
Confidence            21  1111111  1234455555555321      111223445544       6889999999999999 899999999


Q ss_pred             HHHHHHHHHhCCc-EEEEecCC
Q 012882          177 LSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       177 L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      +.++|.++.++|. ||++||+.
T Consensus       179 ~~~~l~~l~~~g~tvi~vtHd~  200 (224)
T 2pcj_A          179 VMDIFLKINEGGTSIVMVTHER  200 (224)
T ss_dssp             HHHHHHHHHHTTCEEEEECSCH
T ss_pred             HHHHHHHHHHCCCEEEEEcCCH
Confidence            9999999987777 99999983

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.74  E-value=3e-18  Score=166.97  Aligned_cols=156  Identities=17%  Similarity=0.137  Sum_probs=106.7

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---HHHHHHHHHHhhh---hhcccchhhhhhccccC-
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---LKINEHMHRLWKN---QVAEKSLRSSISGWITN-  113 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---~~~~~~i~~~~~~---~~~~~t~~e~l~~~~~~-  113 (454)
                      .++.-++|+||||||||||+++|+|.+++   ..+.|.+++..   ....+.++++.|.   .....|+.+++...... 
T Consensus        31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p---~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~  107 (266)
T 2yz2_A           31 NEGECLLVAGNTGSGKSTLLQIVAGLIEP---TSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF  107 (266)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCCC---CCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc
Confidence            46788999999999999999999999874   24555554311   1233445666664   23456888887332111 


Q ss_pred             CC--CChHHHHHHHHHHhhh--hHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882          114 LP--FDSKVMEWVAAEEKYK--QEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV  181 (454)
Q Consensus       114 ~~--~~~~~~e~ll~~~~l~--~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll  181 (454)
                      ..  .....+++++..+++.  ...      ......+++++       +||+.+|+||+||||+ +||+..+..+.++|
T Consensus       108 ~~~~~~~~~~~~~l~~~gl~~~~~~------~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l  181 (266)
T 2yz2_A          108 YPDRDPVPLVKKAMEFVGLDFDSFK------DRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIV  181 (266)
T ss_dssp             CTTSCSHHHHHHHHHHTTCCHHHHT------TCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCcCCcccc------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHH
Confidence            11  1134567777777764  321      11223455554       6888999999999999 89999999999999


Q ss_pred             HHHHhCCc-EEEEecCCCccchhcC
Q 012882          182 SRLLSTGT-VLVATSNRAPWDLNQD  205 (454)
Q Consensus       182 ~~L~~~G~-vlV~ThN~~P~dLy~~  205 (454)
                      .++.+.|. ||++||+.....-+++
T Consensus       182 ~~l~~~g~tii~vtHd~~~~~~~~d  206 (266)
T 2yz2_A          182 EKWKTLGKTVILISHDIETVINHVD  206 (266)
T ss_dssp             HHHHHTTCEEEEECSCCTTTGGGCS
T ss_pred             HHHHHcCCEEEEEeCCHHHHHHhCC
Confidence            99987676 9999998754443444

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.73  E-value=3.2e-18  Score=164.28  Aligned_cols=148  Identities=15%  Similarity=0.220  Sum_probs=99.2

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHH-HHHHHHHhhh--hhcccchhhhhhccc
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKI-NEHMHRLWKN--QVAEKSLRSSISGWI  111 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~-~~~i~~~~~~--~~~~~t~~e~l~~~~  111 (454)
                      +.+.-++|+||||||||||+++|+|.+++   ..+.+.+++.      .... ...++++.|.  ....+|+.+++....
T Consensus        30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~  106 (240)
T 1ji0_A           30 PRGQIVTLIGANGAGKTTTLSAIAGLVRA---QKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGA  106 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGG
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhh
Confidence            45778999999999999999999999874   2345555431      1111 2236677665  345678888883322


Q ss_pred             -cCCCCCh--HHHHHHHHHHh-hhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          112 -TNLPFDS--KVMEWVAAEEK-YKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       112 -~~~~~~~--~~~e~ll~~~~-l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                       .......  ...+.++..++ +....      ......+++++       +||+.+|+||+||||+ +||+..+..+.+
T Consensus       107 ~~~~~~~~~~~~~~~~l~~~~~l~~~~------~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~  180 (240)
T 1ji0_A          107 YNRKDKEGIKRDLEWIFSLFPRLKERL------KQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFE  180 (240)
T ss_dssp             TTCCCSSHHHHHHHHHHHHCHHHHTTT------TSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHcccHhhHh------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHH
Confidence             1111121  33455555553 43211      11122334443       6888999999999999 899999999999


Q ss_pred             HHHHHHhCCc-EEEEecCC
Q 012882          180 IVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       180 ll~~L~~~G~-vlV~ThN~  197 (454)
                      +|.++.+.|. +|++||+.
T Consensus       181 ~l~~~~~~g~tvi~vtHd~  199 (240)
T 1ji0_A          181 VIQKINQEGTTILLVEQNA  199 (240)
T ss_dssp             HHHHHHHTTCCEEEEESCH
T ss_pred             HHHHHHHCCCEEEEEecCH
Confidence            9999987776 99999983

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.73  E-value=6.3e-19  Score=166.46  Aligned_cols=151  Identities=10%  Similarity=0.080  Sum_probs=101.9

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH-HHHHHHHHHhhh--hhcccchhhhhhcc--ccCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML-KINEHMHRLWKN--QVAEKSLRSSISGW--ITNLP  115 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~-~~~~~i~~~~~~--~~~~~t~~e~l~~~--~~~~~  115 (454)
                      ..++-++|+||||||||||+++|+|.+++   ..+.+.+++... ...+.+++++|.  ....+|+.+++...  .....
T Consensus        33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~  109 (214)
T 1sgw_A           33 EKGNVVNFHGPNGIGKTTLLKTISTYLKP---LKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK  109 (214)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCc
Confidence            45677999999999999999999999874   245555543111 123345566554  34456788877221  11111


Q ss_pred             CChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC
Q 012882          116 FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST  187 (454)
Q Consensus       116 ~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~  187 (454)
                      .....++.++..+++...       ......+++++       +||+.+|++|+||||+ +||+..+..+.++|.++.+.
T Consensus       110 ~~~~~~~~~l~~~gl~~~-------~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~  182 (214)
T 1sgw_A          110 VNKNEIMDALESVEVLDL-------KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE  182 (214)
T ss_dssp             CCHHHHHHHHHHTTCCCT-------TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCCcC-------CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC
Confidence            223455666666665321       11123444443       6889999999999999 89999999999999999766


Q ss_pred             Cc-EEEEecCCCccc
Q 012882          188 GT-VLVATSNRAPWD  201 (454)
Q Consensus       188 G~-vlV~ThN~~P~d  201 (454)
                      |. ||++||+.....
T Consensus       183 g~tiiivtHd~~~~~  197 (214)
T 1sgw_A          183 KGIVIISSREELSYC  197 (214)
T ss_dssp             HSEEEEEESSCCTTS
T ss_pred             CCEEEEEeCCHHHHH
Confidence            66 999999865433

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.73  E-value=2.3e-18  Score=166.25  Aligned_cols=146  Identities=19%  Similarity=0.216  Sum_probs=103.6

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh--hhcccchhhhhhcccc
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN--QVAEKSLRSSISGWIT  112 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~  112 (454)
                      .++.-++|+||||||||||+++|+|.+++   . +.+.+++.      .....+.++++.|.  ....+|+.+++.....
T Consensus        24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~   99 (249)
T 2qi9_C           24 RAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH   99 (249)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc
Confidence            46778999999999999999999999974   2 45555432      12344567777776  3455788888843211


Q ss_pred             CCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCc-------EEEeeCCC-CCCHHHHHHH
Q 012882          113 NLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGAS-------ILCFDEIQ-TVDVFAIVAL  177 (454)
Q Consensus       113 ~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~-------lL~LDEp~-~lD~~~a~~L  177 (454)
                      .. .....+++++..+++....      ......+++++       +||+.+|+       +|+||||+ +||+..+..+
T Consensus       100 ~~-~~~~~~~~~l~~~~l~~~~------~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l  172 (249)
T 2qi9_C          100 DK-TRTELLNDVAGALALDDKL------GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSAL  172 (249)
T ss_dssp             ST-TCHHHHHHHHHHTTCGGGT------TSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHH
T ss_pred             cC-CcHHHHHHHHHHcCChhHh------cCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHH
Confidence            11 1245566777777764321      11123444444       67889999       99999999 8999999999


Q ss_pred             HHHHHHHHhCCc-EEEEecCC
Q 012882          178 SGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       178 ~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      .++|..+.++|. ||++||+.
T Consensus       173 ~~~l~~l~~~g~tviivtHd~  193 (249)
T 2qi9_C          173 DKILSALSQQGLAIVMSSHDL  193 (249)
T ss_dssp             HHHHHHHHHTTCEEEEECSCH
T ss_pred             HHHHHHHHhCCCEEEEEeCCH
Confidence            999999987776 99999983

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.72  E-value=1.2e-18  Score=176.25  Aligned_cols=148  Identities=14%  Similarity=0.103  Sum_probs=102.4

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH--------HHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM--------LKINEHMHRLWKN--QVAEKSLRSSISGW  110 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~--------~~~~~~i~~~~~~--~~~~~t~~e~l~~~  110 (454)
                      ..+.-++|+||||||||||+++|+|..++.   .+.+.+.+..        ....+.++++.|.  ..+.+|+.+++...
T Consensus        28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~  104 (359)
T 3fvq_A           28 DPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYG  104 (359)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTT
T ss_pred             cCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHH
Confidence            457789999999999999999999998742   3445443211        1112346667666  56678899988433


Q ss_pred             ccC--CCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          111 ITN--LPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       111 ~~~--~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                      ...  ....  ...+++++..+++...      .......|++++       |||+.+|+||+||||+ +||+..+..+.
T Consensus       105 l~~~~~~~~~~~~~v~~~l~~~gL~~~------~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~  178 (359)
T 3fvq_A          105 LGNGKGRTAQERQRIEAMLELTGISEL------AGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIR  178 (359)
T ss_dssp             STTSSCCSHHHHHHHHHHHHHHTCGGG------TTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHH
T ss_pred             HHHcCCChHHHHHHHHHHHHHcCCchH------hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence            222  1111  1455666777766432      122234455554       6889999999999999 89999999999


Q ss_pred             HHHHHHH-hCCc-EEEEecCC
Q 012882          179 GIVSRLL-STGT-VLVATSNR  197 (454)
Q Consensus       179 ~ll~~L~-~~G~-vlV~ThN~  197 (454)
                      +.+.++. +.|. +|++||+.
T Consensus       179 ~~l~~~~~~~g~tvi~vTHd~  199 (359)
T 3fvq_A          179 EDMIAALRANGKSAVFVSHDR  199 (359)
T ss_dssp             HHHHHHHHHTTCEEEEECCCH
T ss_pred             HHHHHHHHhCCCEEEEEeCCH
Confidence            8777765 5687 99999985

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.71  E-value=5.9e-18  Score=164.94  Aligned_cols=149  Identities=12%  Similarity=0.066  Sum_probs=102.4

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh--hhcccchhhhhhccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN--QVAEKSLRSSISGWI  111 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~  111 (454)
                      ..+++-++|+||||||||||+++|+|.+++.   .+.|.+.+.      .....+.++++.|.  ....+|+.+++....
T Consensus        34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~  110 (266)
T 4g1u_C           34 IASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGR  110 (266)
T ss_dssp             EETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGG
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhh
Confidence            3467889999999999999999999998752   345555432      12334455666554  334578888874332


Q ss_pred             cCCC--CChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhcc------CCcEEEeeCCC-CCCHHHHH
Q 012882          112 TNLP--FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQR------GASILCFDEIQ-TVDVFAIV  175 (454)
Q Consensus       112 ~~~~--~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~------~p~lL~LDEp~-~lD~~~a~  175 (454)
                      ....  .....++.++..+++....      ......+++++       +||+.      +|+||+||||+ +||+..+.
T Consensus       111 ~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~  184 (266)
T 4g1u_C          111 APYGGSQDRQALQQVMAQTDCLALA------QRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQ  184 (266)
T ss_dssp             TTSCSTTHHHHHHHHHHHTTCSTTT------TSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHH
T ss_pred             hhcCcHHHHHHHHHHHHHcCChhHh------cCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHH
Confidence            2221  1224566677777664321      11223455554       67888      99999999999 89999999


Q ss_pred             HHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          176 ALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       176 ~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      .+.++|.++.++ |. ||++||+.
T Consensus       185 ~i~~~l~~l~~~~~~tvi~vtHdl  208 (266)
T 4g1u_C          185 HTLRLLRQLTRQEPLAVCCVLHDL  208 (266)
T ss_dssp             HHHHHHHHHHHHSSEEEEEECSCH
T ss_pred             HHHHHHHHHHHcCCCEEEEEEcCH
Confidence            999999999765 54 99999984

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.71  E-value=1.1e-18  Score=177.71  Aligned_cols=148  Identities=16%  Similarity=0.131  Sum_probs=99.8

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhccccCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWITNL  114 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~  114 (454)
                      ..+.-++|+||||||||||+++|+|..++   ..+.+.+.+..    ....+.++++.|+  +.+.+|+.+++.......
T Consensus        27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p---~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~  103 (381)
T 3rlf_A           27 HEGEFVVFVGPSGCGKSTLLRMIAGLETI---TSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA  103 (381)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT
T ss_pred             CCCCEEEEEcCCCchHHHHHHHHHcCCCC---CCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc
Confidence            46788999999999999999999999874   24455554321    0112335555555  455677777773322111


Q ss_pred             CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882          115 PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS  182 (454)
Q Consensus       115 ~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~  182 (454)
                      ..+.    ..+++++..+++...      .......|++++       |||+.+|+||+||||+ +||+..+..+.++|.
T Consensus       104 ~~~~~~~~~~v~~~l~~~~L~~~------~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~  177 (381)
T 3rlf_A          104 GAKKEVINQRVNQVAEVLQLAHL------LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEIS  177 (381)
T ss_dssp             TCCHHHHHHHHHHHHHHTTCGGG------TTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCchh------hcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHH
Confidence            1111    344555555555321      112233455554       6888999999999999 899999999999999


Q ss_pred             HHHhC-Cc-EEEEecCC
Q 012882          183 RLLST-GT-VLVATSNR  197 (454)
Q Consensus       183 ~L~~~-G~-vlV~ThN~  197 (454)
                      ++.++ |. +|++||+.
T Consensus       178 ~l~~~~g~tii~vTHd~  194 (381)
T 3rlf_A          178 RLHKRLGRTMIYVTHDQ  194 (381)
T ss_dssp             HHHHHHCCEEEEECSCH
T ss_pred             HHHHhCCCEEEEEECCH
Confidence            99764 77 99999985

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.71  E-value=1.1e-18  Score=167.69  Aligned_cols=147  Identities=15%  Similarity=0.113  Sum_probs=97.8

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhccccCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWITNL  114 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~  114 (454)
                      ++ .-++|+||||||||||+++|+|.+++   ..+.+.+++..    ....+.++++.|.  ..+.+|+.+++.......
T Consensus        23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~   98 (240)
T 2onk_A           23 GR-DYCVLLGPTGAGKSVFLELIAGIVKP---DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV   98 (240)
T ss_dssp             CS-SEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS
T ss_pred             CC-EEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc
Confidence            46 88999999999999999999999874   24555554311    0112345566554  344567888773221111


Q ss_pred             C--CChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHH
Q 012882          115 P--FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRL  184 (454)
Q Consensus       115 ~--~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L  184 (454)
                      .  .....+++++..+++...      .......+++++       +||+.+|++|+||||+ +||+..+..+.++|..+
T Consensus        99 ~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l  172 (240)
T 2onk_A           99 ERVERDRRVREMAEKLGIAHL------LDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFV  172 (240)
T ss_dssp             CHHHHHHHHHHHHHTTTCTTT------TTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHcCCHHH------hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            1  012334455555555321      111233455554       6889999999999999 89999999999999999


Q ss_pred             HhC-Cc-EEEEecCC
Q 012882          185 LST-GT-VLVATSNR  197 (454)
Q Consensus       185 ~~~-G~-vlV~ThN~  197 (454)
                      .++ |. ||++||+.
T Consensus       173 ~~~~g~tvi~vtHd~  187 (240)
T 2onk_A          173 QREFDVPILHVTHDL  187 (240)
T ss_dssp             HHHHTCCEEEEESCH
T ss_pred             HHhcCCEEEEEeCCH
Confidence            753 66 99999984

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.71  E-value=2.8e-17  Score=158.43  Aligned_cols=152  Identities=14%  Similarity=0.129  Sum_probs=101.4

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh-hcccchhhhhhccccC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ-VAEKSLRSSISGWITN  113 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~~  113 (454)
                      ++++-++|+||||||||||+++|+|.+++   ..+.|.+.+.      .....+.++++.|.. ....|+.+++..... 
T Consensus        33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~-  108 (247)
T 2ff7_A           33 KQGEVIGIVGRSGSGKSTLTKLIQRFYIP---ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-  108 (247)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCT-
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccCC-
Confidence            46788999999999999999999999874   2455555431      123455677777751 123588888733211 


Q ss_pred             CCCChHHHHHHHHHHhhhhHHh-----hcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882          114 LPFDSKVMEWVAAEEKYKQEVQ-----MKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI  180 (454)
Q Consensus       114 ~~~~~~~~e~ll~~~~l~~~~~-----~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l  180 (454)
                       ......++.++..+++.....     ....+......+++++       +||+.+|+||+||||+ +||+..+..+.++
T Consensus       109 -~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~  187 (247)
T 2ff7_A          109 -GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN  187 (247)
T ss_dssp             -TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence             123344455555555532111     0011111123455554       7889999999999999 8999999999999


Q ss_pred             HHHHHhCCc-EEEEecCCC
Q 012882          181 VSRLLSTGT-VLVATSNRA  198 (454)
Q Consensus       181 l~~L~~~G~-vlV~ThN~~  198 (454)
                      |.++. +|. ||++||+..
T Consensus       188 l~~~~-~g~tviivtH~~~  205 (247)
T 2ff7_A          188 MHKIC-KGRTVIIIAHRLS  205 (247)
T ss_dssp             HHHHH-TTSEEEEECSSGG
T ss_pred             HHHHc-CCCEEEEEeCCHH
Confidence            99995 576 999999853

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.70  E-value=5.8e-18  Score=170.88  Aligned_cols=147  Identities=16%  Similarity=0.138  Sum_probs=102.9

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhccc--c
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWI--T  112 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~--~  112 (454)
                      ..+.-++|+||||||||||+++|+|..++   ..+.+.+++..    ....+.++++.|.  ..+.+|+.+++....  .
T Consensus        24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~  100 (348)
T 3d31_A           24 ESGEYFVILGPTGAGKTLFLELIAGFHVP---DSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMK  100 (348)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSSCC---SEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCccHHHHHHHHHcCCCC---CCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHc
Confidence            46678999999999999999999999874   24556554321    1224456777665  456678888872211  1


Q ss_pred             CCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHH
Q 012882          113 NLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRL  184 (454)
Q Consensus       113 ~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L  184 (454)
                      ..... ..+++++..+++...      .......|++++       +||+.+|+||+||||+ +||+..+..+.++|.++
T Consensus       101 ~~~~~-~~v~~~l~~~~L~~~------~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l  173 (348)
T 3d31_A          101 KIKDP-KRVLDTARDLKIEHL------LDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVL  173 (348)
T ss_dssp             CCCCH-HHHHHHHHHTTCTTT------TTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHH
T ss_pred             CCCHH-HHHHHHHHHcCCchH------hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence            11111 455666666665331      112233455554       6889999999999999 89999999999999999


Q ss_pred             Hh-CCc-EEEEecCC
Q 012882          185 LS-TGT-VLVATSNR  197 (454)
Q Consensus       185 ~~-~G~-vlV~ThN~  197 (454)
                      .+ .|. +|++||+.
T Consensus       174 ~~~~g~tii~vTHd~  188 (348)
T 3d31_A          174 HKKNKLTVLHITHDQ  188 (348)
T ss_dssp             HHHTTCEEEEEESCH
T ss_pred             HHhcCCEEEEEeCCH
Confidence            75 476 99999984

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.70  E-value=3.8e-18  Score=167.44  Aligned_cols=151  Identities=13%  Similarity=0.123  Sum_probs=101.2

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh--------HHHHHHHHHHHhhhhh--c--ccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--------MLKINEHMHRLWKNQV--A--EKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f--------~~~~~~~i~~~~~~~~--~--~~t~~e~l  107 (454)
                      ..++.-++|+||||||||||+++|+|.+++.   .+.|.+.+.        .....+.++++.|...  .  .+|+.+++
T Consensus        44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl  120 (279)
T 2ihy_A           44 IAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVV  120 (279)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHH
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHH
Confidence            3467789999999999999999999998742   345555431        1223445666766521  2  34888887


Q ss_pred             hccccC---C--CCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCH
Q 012882          108 SGWITN---L--PFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDV  171 (454)
Q Consensus       108 ~~~~~~---~--~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~  171 (454)
                      ......   .  ....   ..+++++..+++....      ......+++++       +||+.+|+||+||||+ +||+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~------~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~  194 (279)
T 2ihy_A          121 ISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKA------QQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDF  194 (279)
T ss_dssp             HTTC---------CCHHHHHHHHHHHHHTTCGGGT------TSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCH
T ss_pred             HhhhhhccccccCCcHHHHHHHHHHHHHcCChhHh------cCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCH
Confidence            332111   0  0111   3445566666653321      11223444444       6888999999999999 8999


Q ss_pred             HHHHHHHHHHHHHHhCCc-E--EEEecCCCc
Q 012882          172 FAIVALSGIVSRLLSTGT-V--LVATSNRAP  199 (454)
Q Consensus       172 ~~a~~L~~ll~~L~~~G~-v--lV~ThN~~P  199 (454)
                      ..+..+.++|.++.++|. |  |++||+...
T Consensus       195 ~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~  225 (279)
T 2ihy_A          195 IARESLLSILDSLSDSYPTLAMIYVTHFIEE  225 (279)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCEEEEEESCGGG
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEEEecCHHH
Confidence            999999999999976676 8  999998643

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.70  E-value=3.8e-18  Score=165.15  Aligned_cols=141  Identities=14%  Similarity=0.091  Sum_probs=97.8

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh--hhcccchhhhhhcccc---CC-
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN--QVAEKSLRSSISGWIT---NL-  114 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~---~~-  114 (454)
                      +++.-++|+||||||||||+++|+|.+++.   .+.+..       .+.+++++|.  ....+|+.+++.....   .. 
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~-------~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~   98 (253)
T 2nq2_C           29 NKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV-------YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTF   98 (253)
T ss_dssp             ETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE-------CSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE-------eccEEEEcCCCccCCCCCHHHHHHHhhhhhcccc
Confidence            467789999999999999999999998742   344431       1235566665  3345688888733211   10 


Q ss_pred             -CCC---hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882          115 -PFD---SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS  182 (454)
Q Consensus       115 -~~~---~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~  182 (454)
                       ...   ...+++++..+++....      ......+++++       +||+.+|+||+||||+ +||+..+..+.++|.
T Consensus        99 ~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~  172 (253)
T 2nq2_C           99 AKPKSHDYQVAMQALDYLNLTHLA------KREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLI  172 (253)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCGGGT------TSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHcCChHHh------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence             011   13455666666664321      11233445554       6888999999999999 899999999999999


Q ss_pred             HHHhC-Cc-EEEEecCC
Q 012882          183 RLLST-GT-VLVATSNR  197 (454)
Q Consensus       183 ~L~~~-G~-vlV~ThN~  197 (454)
                      ++.++ |. ||++||+.
T Consensus       173 ~l~~~~g~tvi~vtHd~  189 (253)
T 2nq2_C          173 DLAQSQNMTVVFTTHQP  189 (253)
T ss_dssp             HHHHTSCCEEEEEESCH
T ss_pred             HHHHhcCCEEEEEecCH
Confidence            99876 76 99999983

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.69  E-value=1.1e-17  Score=169.57  Aligned_cols=148  Identities=16%  Similarity=0.148  Sum_probs=102.3

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhccccCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWITNL  114 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~  114 (454)
                      +.+.-++|+||||||||||+++|+|..++   ..+.+.+++..    ....+.++++.|.  ..+.+|+.+++.......
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~  103 (359)
T 2yyz_A           27 KDGEFVALLGPSGCGKTTTLLMLAGIYKP---TSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR  103 (359)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHHCCCCC---CccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence            46778999999999999999999999874   24555554311    0112346666665  456678888873322211


Q ss_pred             CCC----hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882          115 PFD----SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS  182 (454)
Q Consensus       115 ~~~----~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~  182 (454)
                      ...    ...+++++..+++....      ......+++++       +||+.+|+||+||||+ +||+..+..+.++|.
T Consensus       104 ~~~~~~~~~~v~~~l~~~~L~~~~------~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~  177 (359)
T 2yyz_A          104 RISKDEVEKRVVEIARKLLIDNLL------DRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIK  177 (359)
T ss_dssp             CSHHHHTTHHHHHHHHHTTCGGGT------TSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCchHh------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence            111    13456666766664321      12233455554       6889999999999999 899999999999999


Q ss_pred             HHHhC-Cc-EEEEecCC
Q 012882          183 RLLST-GT-VLVATSNR  197 (454)
Q Consensus       183 ~L~~~-G~-vlV~ThN~  197 (454)
                      ++.++ |. +|++||+.
T Consensus       178 ~l~~~~g~tvi~vTHd~  194 (359)
T 2yyz_A          178 HLQQELGITSVYVTHDQ  194 (359)
T ss_dssp             HHHHHHCCEEEEEESCH
T ss_pred             HHHHhcCCEEEEEcCCH
Confidence            99754 76 99999984

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.69  E-value=2.8e-18  Score=173.63  Aligned_cols=148  Identities=18%  Similarity=0.200  Sum_probs=101.9

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---------HHHHHHHHHHHhhh--hhcccchhhhhhc
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---------MLKINEHMHRLWKN--QVAEKSLRSSISG  109 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---------~~~~~~~i~~~~~~--~~~~~t~~e~l~~  109 (454)
                      +.+.-++|+||||||||||+++|+|..++.   .+.+.+++.         ....++.++++.|.  ..+.+|+.+++..
T Consensus        29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~  105 (353)
T 1oxx_K           29 ENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAF  105 (353)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHG
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHH
Confidence            467789999999999999999999998742   344544321         11122346666665  4566788888833


Q ss_pred             cccCCCCC----hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882          110 WITNLPFD----SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL  177 (454)
Q Consensus       110 ~~~~~~~~----~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L  177 (454)
                      ........    ...+++++..+++....      ......|++++       +||+.+|+||+||||+ +||+..+..+
T Consensus       106 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~------~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l  179 (353)
T 1oxx_K          106 PLTNMKMSKEEIRKRVEEVAKILDIHHVL------NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSA  179 (353)
T ss_dssp             GGTTSSCCHHHHHHHHHHHHHHTTCGGGT------TSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCCchHh------cCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence            22211112    13455666666664321      12233455554       6889999999999999 8999999999


Q ss_pred             HHHHHHHHhC-Cc-EEEEecCC
Q 012882          178 SGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       178 ~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      .++|.++.++ |. +|++|||.
T Consensus       180 ~~~l~~l~~~~g~tvi~vTHd~  201 (353)
T 1oxx_K          180 RALVKEVQSRLGVTLLVVSHDP  201 (353)
T ss_dssp             HHHHHHHHHHHCCEEEEEESCH
T ss_pred             HHHHHHHHHhcCCEEEEEeCCH
Confidence            9999999754 76 99999984

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.69  E-value=6.7e-18  Score=170.75  Aligned_cols=148  Identities=16%  Similarity=0.166  Sum_probs=98.7

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhccc--c
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWI--T  112 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~--~  112 (454)
                      +.+.-++|+||||||||||+++|+|..++   ..+.+.+.+..    ....+.++++.|.  ..+.+|+.+++....  .
T Consensus        39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~  115 (355)
T 1z47_A           39 REGEMVGLLGPSGSGKTTILRLIAGLERP---TKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK  115 (355)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCCC---CccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc
Confidence            45678999999999999999999999874   24555554311    0112335555554  445667777762211  1


Q ss_pred             CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882          113 NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS  182 (454)
Q Consensus       113 ~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~  182 (454)
                      .....  ...+++++..+++...      .......|++++       +||+.+|+||+||||+ +||+..+..+.++|.
T Consensus       116 ~~~~~~~~~~v~~~l~~~gL~~~------~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~  189 (355)
T 1z47_A          116 RVPKDEMDARVRELLRFMRLESY------ANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVR  189 (355)
T ss_dssp             TCCHHHHHHHHHHHHHHTTCGGG------TTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCChhH------hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            11111  1344555555555321      112233455554       6889999999999999 899999999999999


Q ss_pred             HHHhC-Cc-EEEEecCC
Q 012882          183 RLLST-GT-VLVATSNR  197 (454)
Q Consensus       183 ~L~~~-G~-vlV~ThN~  197 (454)
                      ++.++ |. +|++||+.
T Consensus       190 ~l~~~~g~tvi~vTHd~  206 (355)
T 1z47_A          190 QVHDEMGVTSVFVTHDQ  206 (355)
T ss_dssp             HHHHHHTCEEEEECSCH
T ss_pred             HHHHhcCCEEEEECCCH
Confidence            99754 76 99999984

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.68  E-value=1.5e-17  Score=169.17  Aligned_cols=148  Identities=18%  Similarity=0.205  Sum_probs=99.4

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhccccCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWITNL  114 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~  114 (454)
                      ..+.-++|+||||||||||+++|+|..++   ..+.+.+++..    ....+.++++.|.  ..+.+|+.+++.......
T Consensus        35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~  111 (372)
T 1v43_A           35 KDGEFLVLLGPSGCGKTTTLRMIAGLEEP---TEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK  111 (372)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCCC---CceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence            46778999999999999999999999874   24555554311    0112345666665  456788888884322211


Q ss_pred             CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882          115 PFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS  182 (454)
Q Consensus       115 ~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~  182 (454)
                      ....    ..+++++..+++....      ......|++++       +||+.+|+||+||||+ +||+..+..+.++|.
T Consensus       112 ~~~~~~~~~~v~~~l~~~~L~~~~------~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~  185 (372)
T 1v43_A          112 KFPKDEIDKRVRWAAELLQIEELL------NRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIK  185 (372)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCGGGT------TSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCChhHh------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence            1121    3455666666664321      11233455554       6888999999999999 899999999999999


Q ss_pred             HHHhC-Cc-EEEEecCC
Q 012882          183 RLLST-GT-VLVATSNR  197 (454)
Q Consensus       183 ~L~~~-G~-vlV~ThN~  197 (454)
                      ++.++ |. +|++||+.
T Consensus       186 ~l~~~~g~tvi~vTHd~  202 (372)
T 1v43_A          186 KLQQKLKVTTIYVTHDQ  202 (372)
T ss_dssp             HHHHHHTCEEEEEESCH
T ss_pred             HHHHhCCCEEEEEeCCH
Confidence            99764 76 99999984

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.67  E-value=5.6e-18  Score=172.54  Aligned_cols=148  Identities=17%  Similarity=0.193  Sum_probs=96.7

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----------HHHHHHHHHHhhh--hhcccchhhhhh
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----------LKINEHMHRLWKN--QVAEKSLRSSIS  108 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----------~~~~~~i~~~~~~--~~~~~t~~e~l~  108 (454)
                      +.+.-++|+||||||||||+++|+|..++.   .+.+.+++..          ....+.++++.|.  ..+.+|+.+++.
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~  103 (372)
T 1g29_1           27 KDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIA  103 (372)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHH
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHH
Confidence            456789999999999999999999998742   3455443210          0112334555554  345567777762


Q ss_pred             ccc--cCCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882          109 GWI--TNLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA  176 (454)
Q Consensus       109 ~~~--~~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~  176 (454)
                      ...  ......  ...+++++..+++...      .......|++++       +||+.+|+||+||||+ +||+..+..
T Consensus       104 ~~~~~~~~~~~~~~~~v~~~l~~~~L~~~------~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~  177 (372)
T 1g29_1          104 FPLKLRKVPRQEIDQRVREVAELLGLTEL------LNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR  177 (372)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHTCGGG------TTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHCCCchH------hcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHH
Confidence            211  111111  1234455555555321      111223445554       6889999999999999 899999999


Q ss_pred             HHHHHHHHHhC-Cc-EEEEecCC
Q 012882          177 LSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       177 L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      +.++|.++.++ |. +|++||+.
T Consensus       178 l~~~l~~l~~~~g~tvi~vTHd~  200 (372)
T 1g29_1          178 MRAELKKLQRQLGVTTIYVTHDQ  200 (372)
T ss_dssp             HHHHHHHHHHHHTCEEEEEESCH
T ss_pred             HHHHHHHHHHhcCCEEEEECCCH
Confidence            99999999754 76 99999984

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.67  E-value=1.3e-17  Score=169.12  Aligned_cols=148  Identities=18%  Similarity=0.199  Sum_probs=97.6

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH----HHHHHHHHHhhh--hhcccchhhhhhcccc--
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML----KINEHMHRLWKN--QVAEKSLRSSISGWIT--  112 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~----~~~~~i~~~~~~--~~~~~t~~e~l~~~~~--  112 (454)
                      +.+.-++|+||||||||||+++|+|..++   ..+.+.+++...    ...+.++++.|.  ..+.+|+.+++.....  
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~  103 (362)
T 2it1_A           27 KDGEFMALLGPSGSGKSTLLYTIAGIYKP---TSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR  103 (362)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCchHHHHHHHHhcCCCC---CceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence            45678999999999999999999999874   245555543110    112345555554  3455677777622111  


Q ss_pred             CCCCC--hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882          113 NLPFD--SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS  182 (454)
Q Consensus       113 ~~~~~--~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~  182 (454)
                      .....  ...+++++..+++...      .......|++++       +||+.+|+||+||||+ +||+..+..+.++|.
T Consensus       104 ~~~~~~~~~~v~~~l~~~~L~~~------~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~  177 (362)
T 2it1_A          104 KAPREEIDKKVREVAKMLHIDKL------LNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELK  177 (362)
T ss_dssp             TCCHHHHHHHHHHHHHHTTCTTC------TTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCchH------hhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence            11111  1234455555555321      111223455554       6889999999999999 899999999999999


Q ss_pred             HHHhC-Cc-EEEEecCC
Q 012882          183 RLLST-GT-VLVATSNR  197 (454)
Q Consensus       183 ~L~~~-G~-vlV~ThN~  197 (454)
                      ++.++ |. +|++||+.
T Consensus       178 ~l~~~~g~tvi~vTHd~  194 (362)
T 2it1_A          178 RLQKELGITTVYVTHDQ  194 (362)
T ss_dssp             HHHHHHTCEEEEEESCH
T ss_pred             HHHHhCCCEEEEECCCH
Confidence            99754 76 99999984

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.67  E-value=1.7e-16  Score=154.99  Aligned_cols=154  Identities=15%  Similarity=0.114  Sum_probs=95.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh-hcccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ-VAEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~  112 (454)
                      .++++-++|+||||||||||+++|+|.+++   ..+.|.+.+.      .....+.++++.|.. ....|+.+++.....
T Consensus        42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~  118 (271)
T 2ixe_A           42 LYPGKVTALVGPNGSGKSTVAALLQNLYQP---TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLT  118 (271)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCS
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHhhhcc
Confidence            356778999999999999999999999874   2345555431      123445677777652 123488888733221


Q ss_pred             CCCCChHHHHHHHHHHhhhhH---H--hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          113 NLPFDSKVMEWVAAEEKYKQE---V--QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       113 ~~~~~~~~~e~ll~~~~l~~~---~--~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                      .. .........+...++...   .  +....+......+++++       +||+.+|+||+||||+ +||+..+..+.+
T Consensus       119 ~~-~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~  197 (271)
T 2ixe_A          119 RT-PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQR  197 (271)
T ss_dssp             SC-CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred             cC-ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHH
Confidence            11 111111111111111110   0  01111111223445444       6889999999999999 899999999999


Q ss_pred             HHHHHHh-CCc-EEEEecCC
Q 012882          180 IVSRLLS-TGT-VLVATSNR  197 (454)
Q Consensus       180 ll~~L~~-~G~-vlV~ThN~  197 (454)
                      +|.++.+ .|. ||++||+.
T Consensus       198 ~l~~~~~~~g~tviivtHd~  217 (271)
T 2ixe_A          198 LLYESPEWASRTVLLITQQL  217 (271)
T ss_dssp             HHHHCTTTTTSEEEEECSCH
T ss_pred             HHHHHHhhcCCEEEEEeCCH
Confidence            9999864 476 89999983

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.66  E-value=1.6e-16  Score=157.79  Aligned_cols=153  Identities=12%  Similarity=0.146  Sum_probs=100.0

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh-hhcccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN-QVAEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~  112 (454)
                      .++++-++|+||||||||||+++|+|.+++   ..+.|.+++.      ...+++.++++.|+ .....|+.+++.....
T Consensus        77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p---~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~  153 (306)
T 3nh6_A           77 VMPGQTLALVGPSGAGKSTILRLLFRFYDI---SSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRV  153 (306)
T ss_dssp             ECTTCEEEEESSSCHHHHHHHHHHTTSSCC---SEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTST
T ss_pred             EcCCCEEEEECCCCchHHHHHHHHHcCCCC---CCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcc
Confidence            356788999999999999999999999874   2445555432      23456677777776 2224588888743221


Q ss_pred             CCCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          113 NLPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       113 ~~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                        .......+..+...++....     +....+..-...+++++       |||+.+|+||+||||+ +||+.+...+.+
T Consensus       154 --~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~  231 (306)
T 3nh6_A          154 --TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQA  231 (306)
T ss_dssp             --TCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHH
T ss_pred             --cCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH
Confidence              12233444444444432211     00000111112344443       6888999999999999 899999999999


Q ss_pred             HHHHHHhCCcEEEEecCC
Q 012882          180 IVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       180 ll~~L~~~G~vlV~ThN~  197 (454)
                      +|..+.+..++|++||+.
T Consensus       232 ~l~~l~~~~Tvi~itH~l  249 (306)
T 3nh6_A          232 SLAKVCANRTTIVVAHRL  249 (306)
T ss_dssp             HHHHHHTTSEEEEECCSH
T ss_pred             HHHHHcCCCEEEEEEcCh
Confidence            999987654599999973

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.65  E-value=4.6e-17  Score=157.16  Aligned_cols=149  Identities=13%  Similarity=0.100  Sum_probs=93.5

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhC--CCCcccCceEEEechhH------HHH-HHHHHHHhhh--hhcccchhhhhhc
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGA--TEGIVKHRQRFHFHEAM------LKI-NEHMHRLWKN--QVAEKSLRSSISG  109 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~--l~~~~~~k~rv~f~~f~------~~~-~~~i~~~~~~--~~~~~t~~e~l~~  109 (454)
                      .+++-++|+||||||||||+++|+|.  .++   ..+.+.+++..      ... ...+.++.|.  ..+.+|+.+++..
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~  103 (250)
T 2d2e_A           27 PKGEVHALMGPNGAGKSTLGKILAGDPEYTV---ERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRL  103 (250)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHH
Confidence            46788999999999999999999997  432   24555554311      111 1123445554  3445677777622


Q ss_pred             cc---cCCCCC----hHHHHHHHHHHhhh-hHHhhcchHHHHHHH-hhhhh-------hhhccCCcEEEeeCCC-CCCHH
Q 012882          110 WI---TNLPFD----SKVMEWVAAEEKYK-QEVQMKNILPAVADK-FLVDQ-------HADQRGASILCFDEIQ-TVDVF  172 (454)
Q Consensus       110 ~~---~~~~~~----~~~~e~ll~~~~l~-~~~~~~~~l~~va~~-l~~~~-------rAL~~~p~lL~LDEp~-~lD~~  172 (454)
                      ..   ......    ...+++++..+++. ...      ...... +++++       +||+.+|+||+||||+ +||+.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~------~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~  177 (250)
T 2d2e_A          104 ALQAKLGREVGVAEFWTKVKKALELLDWDESYL------SRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDID  177 (250)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGG------GSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHH
T ss_pred             HHHhhccccCCHHHHHHHHHHHHHHcCCChhHh------cCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHH
Confidence            11   111111    12345556655552 211      111122 44443       6888999999999999 89999


Q ss_pred             HHHHHHHHHHHHHhCCc-EEEEecCCC
Q 012882          173 AIVALSGIVSRLLSTGT-VLVATSNRA  198 (454)
Q Consensus       173 ~a~~L~~ll~~L~~~G~-vlV~ThN~~  198 (454)
                      .+..+.++|.++.++|. ||++||+..
T Consensus       178 ~~~~l~~~l~~l~~~g~tvi~vtHd~~  204 (250)
T 2d2e_A          178 ALKVVARGVNAMRGPNFGALVITHYQR  204 (250)
T ss_dssp             HHHHHHHHHHHHCSTTCEEEEECSSSG
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence            99999999999976676 999999853

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.64  E-value=5.7e-16  Score=150.41  Aligned_cols=151  Identities=13%  Similarity=0.145  Sum_probs=95.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh-hcccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ-VAEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~  112 (454)
                      .++++-++|+||||||||||+++|+|.+++  .  +.|.+.+.      .....+.++++.|.. ....|+.+++.....
T Consensus        43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~--G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~  118 (260)
T 2ghi_A           43 IPSGTTCALVGHTGSGKSTIAKLLYRFYDA--E--GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKL  118 (260)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSSCC--E--EEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCT
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhccCCC--C--eEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCC
Confidence            356788999999999999999999999862  3  45555431      122344566666651 123588888732211


Q ss_pred             CCCCChHHHHHHHHHHhhhhHHh-hcc----hHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          113 NLPFDSKVMEWVAAEEKYKQEVQ-MKN----ILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       113 ~~~~~~~~~e~ll~~~~l~~~~~-~~~----~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                        ........+.+...++..... ..+    .+......+++++       +||+.+|+||+||||+ +||+..+..+.+
T Consensus       119 --~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~  196 (260)
T 2ghi_A          119 --DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK  196 (260)
T ss_dssp             --TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHH
T ss_pred             --CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence              122333344444444322110 000    0000112344443       6888999999999999 899999999999


Q ss_pred             HHHHHHhCCc-EEEEecCC
Q 012882          180 IVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       180 ll~~L~~~G~-vlV~ThN~  197 (454)
                      +|.++.+ |. +|++||+.
T Consensus       197 ~l~~l~~-~~tviivtH~~  214 (260)
T 2ghi_A          197 AVEDLRK-NRTLIIIAHRL  214 (260)
T ss_dssp             HHHHHTT-TSEEEEECSSG
T ss_pred             HHHHhcC-CCEEEEEcCCH
Confidence            9999965 65 99999985

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.64  E-value=4.7e-17  Score=158.32  Aligned_cols=145  Identities=14%  Similarity=0.065  Sum_probs=97.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH---HHHHHHH-HHhhhhhcccchhhhhhccccCCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML---KINEHMH-RLWKNQVAEKSLRSSISGWITNLP  115 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~---~~~~~i~-~~~~~~~~~~t~~e~l~~~~~~~~  115 (454)
                      .. +.-++|+||||||||||+++|+|.+ +. .  +.+.+++...   ...+.++ ++.|...-.+|+.+++........
T Consensus        28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~-~--G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~  102 (263)
T 2pjz_A           28 VN-GEKVIILGPNGSGKTTLLRAISGLL-PY-S--GNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKG  102 (263)
T ss_dssp             EC-SSEEEEECCTTSSHHHHHHHHTTSS-CC-E--EEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTC
T ss_pred             EC-CEEEEEECCCCCCHHHHHHHHhCCC-CC-C--cEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcc
Confidence            35 6779999999999999999999988 53 3  4554443110   0023456 666652116678777732111112


Q ss_pred             CChHHHHHHHHHHhhh-hHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh
Q 012882          116 FDSKVMEWVAAEEKYK-QEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS  186 (454)
Q Consensus       116 ~~~~~~e~ll~~~~l~-~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~  186 (454)
                      .....+++++..+++. ...      ......+++++       +||+.+|++|+||||+ +||+..+..+.++|.++.+
T Consensus       103 ~~~~~~~~~l~~~gl~~~~~------~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~  176 (263)
T 2pjz_A          103 LDRDLFLEMLKALKLGEEIL------RRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK  176 (263)
T ss_dssp             CCHHHHHHHHHHTTCCGGGG------GSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS
T ss_pred             hHHHHHHHHHHHcCCChhHh------cCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC
Confidence            2345566677776664 321      11223444444       6888999999999999 8999999999999998854


Q ss_pred             CCcEEEEecCC
Q 012882          187 TGTVLVATSNR  197 (454)
Q Consensus       187 ~G~vlV~ThN~  197 (454)
                        ++|++||+.
T Consensus       177 --tviivtHd~  185 (263)
T 2pjz_A          177 --EGILVTHEL  185 (263)
T ss_dssp             --EEEEEESCG
T ss_pred             --cEEEEEcCH
Confidence              899999985

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.64  E-value=2.2e-17  Score=158.72  Aligned_cols=154  Identities=13%  Similarity=0.105  Sum_probs=97.0

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhhh-hcccchhhhhhccccCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKNQ-VAEKSLRSSISGWITNLP  115 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~~~~  115 (454)
                      ++++-++|+||||||||||+++|+|.+++. .|...+......    ....+.+++++|.. ....|+.+++..... ..
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~-~~  103 (243)
T 1mv5_A           26 QPNSIIAFAGPSGGGKSTIFSLLERFYQPT-AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLE-GD  103 (243)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSSCCS-BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTT-SC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhhcc-CC
Confidence            467889999999999999999999998742 443333221110    11223456666551 122488888733211 11


Q ss_pred             CChHHHHHHHHHHhhhhHHh-----hcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH
Q 012882          116 FDSKVMEWVAAEEKYKQEVQ-----MKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS  182 (454)
Q Consensus       116 ~~~~~~e~ll~~~~l~~~~~-----~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~  182 (454)
                      .....++.++..+++.....     ....+......+++++       +||+.+|+||+||||+ +||+..+..+.++|.
T Consensus       104 ~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~  183 (243)
T 1mv5_A          104 YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALD  183 (243)
T ss_dssp             SCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHH
T ss_pred             CCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence            23344555555555432110     0000011122344443       6888999999999999 899999999999999


Q ss_pred             HHHhCCc-EEEEecCC
Q 012882          183 RLLSTGT-VLVATSNR  197 (454)
Q Consensus       183 ~L~~~G~-vlV~ThN~  197 (454)
                      ++. +|. +|++||+.
T Consensus       184 ~~~-~~~tvi~vtH~~  198 (243)
T 1mv5_A          184 SLM-KGRTTLVIAHRL  198 (243)
T ss_dssp             HHH-TTSEEEEECCSH
T ss_pred             Hhc-CCCEEEEEeCCh
Confidence            997 576 99999973

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.62  E-value=1.3e-16  Score=155.55  Aligned_cols=153  Identities=16%  Similarity=0.143  Sum_probs=95.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HHH-HHHHHHHhhh--hhcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LKI-NEHMHRLWKN--QVAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~~-~~~i~~~~~~--~~~~~t~~e~l~~~  110 (454)
                      ..++.-++|+||||||||||+++|+|..+. ....+.+.+.+..      ... ...+.++.|.  ..+.+|+.+++...
T Consensus        43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~-~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~  121 (267)
T 2zu0_C           43 VHPGEVHAIMGPNGSGKSTLSATLAGREDY-EVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTA  121 (267)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTCTTC-EEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHH
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHH
Confidence            356788999999999999999999998421 1124555554321      111 1124455554  23455666665211


Q ss_pred             c------cCC-CCCh----HHHHHHHHHHhhhhHHhhcchHHHHHH-Hhhhhh-------hhhccCCcEEEeeCCC-CCC
Q 012882          111 I------TNL-PFDS----KVMEWVAAEEKYKQEVQMKNILPAVAD-KFLVDQ-------HADQRGASILCFDEIQ-TVD  170 (454)
Q Consensus       111 ~------~~~-~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~-~l~~~~-------rAL~~~p~lL~LDEp~-~lD  170 (454)
                      .      ... ....    ..+++++..+++...     ....... .+++++       +||+.+|+||+||||+ +||
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD  196 (267)
T 2zu0_C          122 LNAVRSYRGQETLDRFDFQDLMEEKIALLKMPED-----LLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD  196 (267)
T ss_dssp             HHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTT-----TTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCC
T ss_pred             HHhhhhhhccccCCHHHHHHHHHHHHHHcCCChh-----HhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence            0      111 1111    234455555555210     0011111 244443       6888999999999999 899


Q ss_pred             HHHHHHHHHHHHHHHhCCc-EEEEecCCC
Q 012882          171 VFAIVALSGIVSRLLSTGT-VLVATSNRA  198 (454)
Q Consensus       171 ~~~a~~L~~ll~~L~~~G~-vlV~ThN~~  198 (454)
                      +..+..+.++|.++.++|. ||++||+..
T Consensus       197 ~~~~~~l~~~l~~l~~~g~tviivtHd~~  225 (267)
T 2zu0_C          197 IDALKVVADGVNSLRDGKRSFIIVTHYQR  225 (267)
T ss_dssp             HHHHHHHHHHHHTTCCSSCEEEEECSSGG
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeeCHH
Confidence            9999999999999876677 999999853

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.60  E-value=2.8e-16  Score=150.53  Aligned_cols=145  Identities=16%  Similarity=0.153  Sum_probs=90.8

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh-hhcccchhhhhhccccCCCCChH
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN-QVAEKSLRSSISGWITNLPFDSK  119 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~~~~~~  119 (454)
                      ++++-++|+||||||||||+++|+|.+++   ..+.|.+.+       .++++.|. .....|+.+++.....   ....
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g-------~i~~v~Q~~~~~~~tv~enl~~~~~---~~~~   95 (237)
T 2cbz_A           29 PEGALVAVVGQVGCGKSSLLSALLAEMDK---VEGHVAIKG-------SVAYVPQQAWIQNDSLRENILFGCQ---LEEP   95 (237)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTCSEE---EEEEEEECS-------CEEEECSSCCCCSEEHHHHHHTTSC---CCTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECC-------EEEEEcCCCcCCCcCHHHHhhCccc---cCHH
Confidence            46788999999999999999999999864   245565544       25566554 2335678888733211   1122


Q ss_pred             HHHHHHHHHhhhhHHhh-----cchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHH---H
Q 012882          120 VMEWVAAEEKYKQEVQM-----KNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVS---R  183 (454)
Q Consensus       120 ~~e~ll~~~~l~~~~~~-----~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~---~  183 (454)
                      ..+.+....++....+.     ...+......+++++       +||+.+|+||+||||+ +||+..+..+.+++.   .
T Consensus        96 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~  175 (237)
T 2cbz_A           96 YYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKG  175 (237)
T ss_dssp             HHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTS
T ss_pred             HHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHh
Confidence            22333332222111000     000011122344443       6888999999999999 899999999998884   3


Q ss_pred             HHhCCc-EEEEecCCCc
Q 012882          184 LLSTGT-VLVATSNRAP  199 (454)
Q Consensus       184 L~~~G~-vlV~ThN~~P  199 (454)
                      +. +|. +|++||+...
T Consensus       176 ~~-~~~tviivtH~~~~  191 (237)
T 2cbz_A          176 ML-KNKTRILVTHSMSY  191 (237)
T ss_dssp             TT-TTSEEEEECSCSTT
T ss_pred             hc-CCCEEEEEecChHH
Confidence            43 466 9999998643

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.59  E-value=4.6e-16  Score=148.22  Aligned_cols=142  Identities=17%  Similarity=0.180  Sum_probs=89.2

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh--hhcccchhhhhhccccCCCCCh
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN--QVAEKSLRSSISGWITNLPFDS  118 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~~~~~  118 (454)
                      ++++-++|+||||||||||+++|+|.+++   ..+.+.+++       .+++++|.  ..+ .|+.+++....   ....
T Consensus        32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g-------~i~~v~q~~~~~~-~tv~enl~~~~---~~~~   97 (229)
T 2pze_A           32 ERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHSG-------RISFCSQFSWIMP-GTIKENIIFGV---SYDE   97 (229)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEECS-------CEEEECSSCCCCS-BCHHHHHHTTS---CCCH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCcC---CccEEEECC-------EEEEEecCCcccC-CCHHHHhhccC---CcCh
Confidence            46788999999999999999999999874   245665554       35566665  223 37778773221   1122


Q ss_pred             HHHHHHHHHHhhhhHHhh-----cchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH-HHHH
Q 012882          119 KVMEWVAAEEKYKQEVQM-----KNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI-VSRL  184 (454)
Q Consensus       119 ~~~e~ll~~~~l~~~~~~-----~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l-l~~L  184 (454)
                      ...+..+...++......     ...+..-...+++++       +||+.+|++|+||||+ ++|+..+..+.++ +..+
T Consensus        98 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~  177 (229)
T 2pze_A           98 YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL  177 (229)
T ss_dssp             HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHh
Confidence            222333333333211100     000000112444444       6888999999999999 8999999999886 4555


Q ss_pred             HhCCc-EEEEecCC
Q 012882          185 LSTGT-VLVATSNR  197 (454)
Q Consensus       185 ~~~G~-vlV~ThN~  197 (454)
                      . .|. +|++||+.
T Consensus       178 ~-~~~tvi~vtH~~  190 (229)
T 2pze_A          178 M-ANKTRILVTSKM  190 (229)
T ss_dssp             T-TTSEEEEECCCH
T ss_pred             h-CCCEEEEEcCCh
Confidence            4 355 99999973

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.58  E-value=5.3e-16  Score=158.77  Aligned_cols=176  Identities=14%  Similarity=0.140  Sum_probs=109.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh-hcccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ-VAEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~  112 (454)
                      ...++-++|+||||||||||+++|+|..+  .  .+.|.+++.      .....+.++++.|.. ....|+.+++...  
T Consensus        44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--~--~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~--  117 (390)
T 3gd7_A           44 ISPGQRVGLLGRTGSGKSTLLSAFLRLLN--T--EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPN--  117 (390)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTCSE--E--EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTT--
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhCCCC--C--CeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhc--
Confidence            35678899999999999999999999875  2  355555432      123345667777661 1235788877311  


Q ss_pred             CCCCChHHHHHHHHHHhhhhHHhhcc-----hHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          113 NLPFDSKVMEWVAAEEKYKQEVQMKN-----ILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       113 ~~~~~~~~~e~ll~~~~l~~~~~~~~-----~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                       .......+++++..+++........     .+..-...|++++       |||+.+|+||+||||+ +||+..+..+.+
T Consensus       118 -~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~  196 (390)
T 3gd7_A          118 -AAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRR  196 (390)
T ss_dssp             -CCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHH
T ss_pred             -cccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH
Confidence             1223455566666666643211000     0000011155554       7889999999999999 899999999999


Q ss_pred             HHHHHHhCCcEEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCchh
Q 012882          180 IVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVD  233 (454)
Q Consensus       180 ll~~L~~~G~vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~D  233 (454)
                      +|..+....++|++||+.. .-..++++          .+.+.++++..+++.+
T Consensus       197 ~l~~~~~~~tvi~vtHd~e-~~~~aDri----------~vl~~G~i~~~g~~~e  239 (390)
T 3gd7_A          197 TLKQAFADCTVILCEARIE-AMLECDQF----------LVIEENKVRQYDSILE  239 (390)
T ss_dssp             HHHTTTTTSCEEEECSSSG-GGTTCSEE----------EEEETTEEEEESSHHH
T ss_pred             HHHHHhCCCEEEEEEcCHH-HHHhCCEE----------EEEECCEEEEECCHHH
Confidence            9988754333999999853 22224432          2334556665555544

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.58  E-value=3.1e-15  Score=161.03  Aligned_cols=155  Identities=18%  Similarity=0.224  Sum_probs=102.2

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhhh-hcccchhhhhhccccCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKNQ-VAEKSLRSSISGWITNL  114 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~~~  114 (454)
                      .++++-++|+||||||||||+++++|..+|. .|...+...+.    ....++.+++++|+. ....|+.+++..... .
T Consensus       366 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~-~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~-~  443 (582)
T 3b5x_A          366 IPQGKTVALVGRSGSGKSTIANLFTRFYDVD-SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAE-G  443 (582)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCC-C
Confidence            3566779999999999999999999998752 44444433222    123445677777762 223488888843221 1


Q ss_pred             CCChHHHHHHHHHHhhhhHHh-----hcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882          115 PFDSKVMEWVAAEEKYKQEVQ-----MKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV  181 (454)
Q Consensus       115 ~~~~~~~e~ll~~~~l~~~~~-----~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll  181 (454)
                      ..+.+..++.+...++.+...     .+..+..-...+++++       |||+++|++|+||||+ ++|+.+...+.+.+
T Consensus       444 ~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l  523 (582)
T 3b5x_A          444 EYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAAL  523 (582)
T ss_pred             CCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH
Confidence            123445555555555533111     1111111223455554       7899999999999999 89999999999999


Q ss_pred             HHHHhCCc-EEEEecCC
Q 012882          182 SRLLSTGT-VLVATSNR  197 (454)
Q Consensus       182 ~~L~~~G~-vlV~ThN~  197 (454)
                      .++.+ |+ +|++||+.
T Consensus       524 ~~~~~-~~tvi~itH~~  539 (582)
T 3b5x_A          524 DELQK-NKTVLVIAHRL  539 (582)
T ss_pred             HHHcC-CCEEEEEecCH
Confidence            99865 66 89999974

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.56  E-value=1.7e-15  Score=149.26  Aligned_cols=142  Identities=18%  Similarity=0.203  Sum_probs=89.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh--hhcccchhhhhhccccCCCCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN--QVAEKSLRSSISGWITNLPFD  117 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~~~~  117 (454)
                      .++++-++|+||||||||||+++|+|.+++   ..+.+.+++       .+++++|.  ... .|+.+++. ..   ...
T Consensus        61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g-------~i~~v~Q~~~l~~-~tv~enl~-~~---~~~  125 (290)
T 2bbs_A           61 IERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHSG-------RISFCSQNSWIMP-GTIKENII-GV---SYD  125 (290)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHTTSSCE---EEEEEECCS-------CEEEECSSCCCCS-SBHHHHHH-TT---CCC
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEEEECC-------EEEEEeCCCccCc-ccHHHHhh-Cc---ccc
Confidence            346777999999999999999999999874   345666554       25566655  223 37777775 21   112


Q ss_pred             hHHHHHHHHHHhhhhHHhh-----cchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH-HHH
Q 012882          118 SKVMEWVAAEEKYKQEVQM-----KNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI-VSR  183 (454)
Q Consensus       118 ~~~~e~ll~~~~l~~~~~~-----~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l-l~~  183 (454)
                      ....+..+...++......     ...+......+++++       +||+.+|+||+||||+ +||+..+..+.++ +..
T Consensus       126 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~  205 (290)
T 2bbs_A          126 EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK  205 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCC
T ss_pred             hHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence            2222233333333211000     001111223455554       6889999999999999 8999999999886 445


Q ss_pred             HHhCCc-EEEEecCC
Q 012882          184 LLSTGT-VLVATSNR  197 (454)
Q Consensus       184 L~~~G~-vlV~ThN~  197 (454)
                      +. .|. ||++||+.
T Consensus       206 ~~-~~~tviivtHd~  219 (290)
T 2bbs_A          206 LM-ANKTRILVTSKM  219 (290)
T ss_dssp             CT-TTSEEEEECCCH
T ss_pred             hh-CCCEEEEEecCH
Confidence            54 466 99999983

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.54  E-value=7.1e-15  Score=158.15  Aligned_cols=153  Identities=18%  Similarity=0.170  Sum_probs=101.7

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh-hcccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ-VAEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~  112 (454)
                      .++++-++|+||||||||||+++++|..++   ..+.+.+++.      ....++.+++++|+. ....|+.+++.....
T Consensus       366 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p---~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~  442 (582)
T 3b60_A          366 IPAGKTVALVGRSGSGKSTIASLITRFYDI---DEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYART  442 (582)
T ss_dssp             ECTTCEEEEEECTTSSHHHHHHHHTTTTCC---SEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTT
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhhccCC---CCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCC
Confidence            356788999999999999999999999874   2345555431      234556677777762 223488888843221


Q ss_pred             CCCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          113 NLPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       113 ~~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                       ...+.+..++.+...++.+..     +.+..+..-...+++++       |||+++|++|+||||+ ++|+.+...+.+
T Consensus       443 -~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~  521 (582)
T 3b60_A          443 -EEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA  521 (582)
T ss_dssp             -SCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHH
T ss_pred             -CCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHH
Confidence             112344455555554443211     00111111122345554       7889999999999999 899999999999


Q ss_pred             HHHHHHhCCc-EEEEecCC
Q 012882          180 IVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       180 ll~~L~~~G~-vlV~ThN~  197 (454)
                      .+.++.+ |+ +|++||+.
T Consensus       522 ~l~~~~~-~~tvi~itH~~  539 (582)
T 3b60_A          522 ALDELQK-NRTSLVIAHRL  539 (582)
T ss_dssp             HHHHHHT-TSEEEEECSCG
T ss_pred             HHHHHhC-CCEEEEEeccH
Confidence            9999975 66 89999975

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.54  E-value=1.1e-14  Score=157.12  Aligned_cols=152  Identities=13%  Similarity=0.162  Sum_probs=102.4

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh-hcccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ-VAEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~  112 (454)
                      .++++-++|+||||||||||++++.|..++   ..+.+.+++.      ....++.+++++|+. ....|+.+|+.....
T Consensus       378 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p---~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~  454 (598)
T 3qf4_B          378 IKPGQKVALVGPTGSGKTTIVNLLMRFYDV---DRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP  454 (598)
T ss_dssp             CCTTCEEEEECCTTSSTTHHHHHHTTSSCC---SEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSST
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCcCC---CCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCC
Confidence            456788999999999999999999999975   2345554431      234566788887762 224588888843221


Q ss_pred             CCCCChHHHHHHHHHHhhhhH-----HhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          113 NLPFDSKVMEWVAAEEKYKQE-----VQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       113 ~~~~~~~~~e~ll~~~~l~~~-----~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                      .  .+.....+.+...++...     .+.+..+..-...+++++       |||+++|+||+||||+ ++|+.+...+.+
T Consensus       455 ~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~  532 (598)
T 3qf4_B          455 G--ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQA  532 (598)
T ss_dssp             T--CCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHH
T ss_pred             C--CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHH
Confidence            1  122233333332222211     012222333445566665       7899999999999999 899999999999


Q ss_pred             HHHHHHhCCc-EEEEecCC
Q 012882          180 IVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       180 ll~~L~~~G~-vlV~ThN~  197 (454)
                      .+.++.+ |+ +|++||+.
T Consensus       533 ~l~~~~~-~~t~i~itH~l  550 (598)
T 3qf4_B          533 AMWKLME-GKTSIIIAHRL  550 (598)
T ss_dssp             HHHHHHT-TSEEEEESCCT
T ss_pred             HHHHHcC-CCEEEEEecCH
Confidence            9999864 55 99999985

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.54  E-value=1.6e-15  Score=161.53  Aligned_cols=142  Identities=11%  Similarity=0.096  Sum_probs=90.5

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhh--cccchhhhhhccccCC-CCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQV--AEKSLRSSISGWITNL-PFD  117 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~--~~~t~~e~l~~~~~~~-~~~  117 (454)
                      ..+.-++|+||||||||||+++|+|.+++. .|.  +.+..      ..+.++++...  ...++.+++....... ...
T Consensus       292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~--i~~~~------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~  362 (538)
T 3ozx_A          292 KEGEIIGILGPNGIGKTTFARILVGEITAD-EGS--VTPEK------QILSYKPQRIFPNYDGTVQQYLENASKDALSTS  362 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSSCCS-BCC--EESSC------CCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcE--EEECC------eeeEeechhcccccCCCHHHHHHHhhhhccchh
Confidence            356779999999999999999999998752 333  32211      11223333321  2345555542211111 112


Q ss_pred             hHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh-CC
Q 012882          118 SKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS-TG  188 (454)
Q Consensus       118 ~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~-~G  188 (454)
                      ....++++..+++...      .......|++++       +||+.+|+||+||||| +||+..+..+.++|.++.+ .|
T Consensus       363 ~~~~~~~l~~~~l~~~------~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g  436 (538)
T 3ozx_A          363 SWFFEEVTKRLNLHRL------LESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERK  436 (538)
T ss_dssp             SHHHHHTTTTTTGGGC------TTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHH------hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC
Confidence            2334455554544321      122233455554       6888999999999999 8999999999999999975 46


Q ss_pred             c-EEEEecCC
Q 012882          189 T-VLVATSNR  197 (454)
Q Consensus       189 ~-vlV~ThN~  197 (454)
                      . ||++||+.
T Consensus       437 ~tvi~vsHdl  446 (538)
T 3ozx_A          437 AVTFIIDHDL  446 (538)
T ss_dssp             CEEEEECSCH
T ss_pred             CEEEEEeCCH
Confidence            6 89999984

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.53  E-value=1.1e-15  Score=164.96  Aligned_cols=141  Identities=16%  Similarity=0.082  Sum_probs=90.4

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhh--hcccchhhhhhccccCCCCCh
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQ--VAEKSLRSSISGWITNLPFDS  118 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~--~~~~t~~e~l~~~~~~~~~~~  118 (454)
                      ..+.-++|+||||||||||+++|+|.+++. .|...  +.       ..+++++|..  ....|+.+++...........
T Consensus       380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~-~G~I~--~~-------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~  449 (607)
T 3bk7_A          380 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPT-EGKVE--WD-------LTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSN  449 (607)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSSCCS-BSCCC--CC-------CCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEE--Ee-------eEEEEEecCccCCCCCcHHHHHHhhhccCCCHH
Confidence            356779999999999999999999998742 33322  11       1244444442  233455554422100000112


Q ss_pred             HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHH-hCCc
Q 012882          119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLL-STGT  189 (454)
Q Consensus       119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~-~~G~  189 (454)
                      ..+++++..+++...      .......|++++       ++|+.+|+||+||||+ +||+..+..+.++|.++. +.|.
T Consensus       450 ~~~~~~l~~~~l~~~------~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~  523 (607)
T 3bk7_A          450 FYKTELLKPLGIIDL------YDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK  523 (607)
T ss_dssp             HHHHHTHHHHTCTTT------TTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCchH------hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCC
Confidence            334455555555321      111223445544       6888999999999999 899999999999999996 4566


Q ss_pred             -EEEEecCC
Q 012882          190 -VLVATSNR  197 (454)
Q Consensus       190 -vlV~ThN~  197 (454)
                       ||++||+.
T Consensus       524 tvi~vsHd~  532 (607)
T 3bk7_A          524 TALVVEHDV  532 (607)
T ss_dssp             EEEEECSCH
T ss_pred             EEEEEeCCH
Confidence             99999984

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.53  E-value=1.8e-14  Score=130.95  Aligned_cols=73  Identities=14%  Similarity=0.195  Sum_probs=56.8

Q ss_pred             cCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchhcCC------chhhhhHHHHHHHHhhccccc
Q 012882          156 RGASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDG------MQREIFQKLVAKLEKHCEIIP  227 (454)
Q Consensus       156 ~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy~~~------l~r~~F~~~I~~L~~~~~vv~  227 (454)
                      .+|++||||||+  ++|......+.+++..+.+.|+.+|+|+|.+|++|++++      +....-...+++|...|.++.
T Consensus        99 ~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~~~~~~~~~~~~l~~~~~~~i~~rl~~~~~~i~  178 (180)
T 3ec2_A           99 LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQREEESSVRISADLASRLGENVVSKIYEMNELLV  178 (180)
T ss_dssp             HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC---CHHHHHHHHHHHHCHHHHHHHHHHEEEEC
T ss_pred             cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhHhhhhccchhhHHHHHHHHHHHHHHHhcCeeee
Confidence            479999999998  799999999999999998888988888899999987633      222222456788888998886


Q ss_pred             c
Q 012882          228 I  228 (454)
Q Consensus       228 l  228 (454)
                      +
T Consensus       179 ~  179 (180)
T 3ec2_A          179 I  179 (180)
T ss_dssp             C
T ss_pred             e
Confidence            5

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.52  E-value=9e-16  Score=163.61  Aligned_cols=141  Identities=16%  Similarity=0.079  Sum_probs=87.6

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhh--hcccchhhhhhccccCCCCCh
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQ--VAEKSLRSSISGWITNLPFDS  118 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~--~~~~t~~e~l~~~~~~~~~~~  118 (454)
                      ..+.-++|+||||||||||+++|+|..++. .|...  +.       ..+++++|..  ....|+.+++...........
T Consensus       310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~-~G~i~--~~-------~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~  379 (538)
T 1yqt_A          310 KKGEVIGIVGPNGIGKTTFVKMLAGVEEPT-EGKIE--WD-------LTVAYKPQYIKADYEGTVYELLSKIDASKLNSN  379 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSSCCS-BCCCC--CC-------CCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEE--EC-------ceEEEEecCCcCCCCCcHHHHHHhhhccCCCHH
Confidence            357789999999999999999999998742 33322  11       1233444432  123455444321100000112


Q ss_pred             HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh-CCc
Q 012882          119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS-TGT  189 (454)
Q Consensus       119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~-~G~  189 (454)
                      ..++.++..+++...      .......|++++       ++|+.+|+||+||||| +||+..+..+.++|.++.+ .|.
T Consensus       380 ~~~~~~l~~~~l~~~------~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~  453 (538)
T 1yqt_A          380 FYKTELLKPLGIIDL------YDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK  453 (538)
T ss_dssp             HHHHHTTTTTTCGGG------TTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCChhh------hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCC
Confidence            233344444443211      111223444443       6888999999999999 8999999999999999963 465


Q ss_pred             -EEEEecCC
Q 012882          190 -VLVATSNR  197 (454)
Q Consensus       190 -vlV~ThN~  197 (454)
                       ||++||+.
T Consensus       454 tvi~vsHd~  462 (538)
T 1yqt_A          454 TALVVEHDV  462 (538)
T ss_dssp             EEEEECSCH
T ss_pred             EEEEEeCCH
Confidence             99999984

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.52  E-value=1.1e-14  Score=156.94  Aligned_cols=152  Identities=14%  Similarity=0.164  Sum_probs=98.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh-hcccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ-VAEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~  112 (454)
                      .++++-++|+||||||||||++++.|..++.   .+.+.+++.      ....++.+++++|+. .-..|+.+|+.....
T Consensus       366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~  442 (587)
T 3qf4_A          366 VKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE  442 (587)
T ss_dssp             ECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCC
Confidence            3567889999999999999999999999752   345544331      234567788888762 223488888743211


Q ss_pred             CCCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          113 NLPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       113 ~~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                        ..+.....+.+...++....     +.+..+.+-...+++++       |||+++|+||+||||+ ++|+.+...+.+
T Consensus       443 --~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~  520 (587)
T 3qf4_A          443 --DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILD  520 (587)
T ss_dssp             --SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHH
T ss_pred             --CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence              12233333333333332110     11111111122344443       6888999999999999 899999999999


Q ss_pred             HHHHHHhCCc-EEEEecCC
Q 012882          180 IVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       180 ll~~L~~~G~-vlV~ThN~  197 (454)
                      .+.++.+ |+ +|++||+.
T Consensus       521 ~l~~~~~-~~tvi~itH~l  538 (587)
T 3qf4_A          521 GLKRYTK-GCTTFIITQKI  538 (587)
T ss_dssp             HHHHHST-TCEEEEEESCH
T ss_pred             HHHHhCC-CCEEEEEecCh
Confidence            9999854 55 99999973

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.51  E-value=1.6e-14  Score=155.33  Aligned_cols=154  Identities=11%  Similarity=0.068  Sum_probs=100.2

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh-hhcccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN-QVAEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~  112 (454)
                      .++++-++|+||||||||||++++.|..++.   .+.+.+++.      ....++.+++++|+ .....|+.+|+.....
T Consensus       364 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~  440 (578)
T 4a82_A          364 IEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP  440 (578)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCS
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCC
Confidence            3567889999999999999999999999752   345555431      23455667777776 2223488888743221


Q ss_pred             CCCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          113 NLPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       113 ~~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                        ........+.+...++....     +.+..+..-...+++++       |||+++|++|+||||+ ++|+.+...+.+
T Consensus       441 --~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~  518 (578)
T 4a82_A          441 --TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQE  518 (578)
T ss_dssp             --SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred             --CCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence              12233333344333332210     11111111223455554       7889999999999999 899999999999


Q ss_pred             HHHHHHhCCcEEEEecCCC
Q 012882          180 IVSRLLSTGTVLVATSNRA  198 (454)
Q Consensus       180 ll~~L~~~G~vlV~ThN~~  198 (454)
                      .+..+.+..++|++||+..
T Consensus       519 ~l~~~~~~~t~i~itH~l~  537 (578)
T 4a82_A          519 ALDVLSKDRTTLIVAHRLS  537 (578)
T ss_dssp             HHHHHTTTSEEEEECSSGG
T ss_pred             HHHHHcCCCEEEEEecCHH
Confidence            9998865445999999853

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.49  E-value=6.2e-15  Score=158.94  Aligned_cols=138  Identities=14%  Similarity=0.123  Sum_probs=86.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhh--hcccchhhhhhccccCCCCChHHH
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQ--VAEKSLRSSISGWITNLPFDSKVM  121 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~--~~~~t~~e~l~~~~~~~~~~~~~~  121 (454)
                      .-++|+||||||||||+++|+|.+++. .|.. +  .      ...+.+++|..  ....++.+++..............
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~-~G~~-~--~------~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~  448 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGALKPD-EGQD-I--P------KLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQ  448 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTSSCCS-BCCC-C--C------SCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCC-CCcC-c--c------CCcEEEecccccccCCccHHHHHHHHhhcccccHHHH
Confidence            338999999999999999999998753 3320 0  0      00122222221  112244444432222222233455


Q ss_pred             HHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHH-hCCc-EE
Q 012882          122 EWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLL-STGT-VL  191 (454)
Q Consensus       122 e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~-~~G~-vl  191 (454)
                      +.++..+++....      ......|++++       +||+.+|+||+||||+ +||+.++..+.++|.++. +.|. ||
T Consensus       449 ~~~l~~l~l~~~~------~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tvi  522 (608)
T 3j16_B          449 TDVVKPLRIDDII------DQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF  522 (608)
T ss_dssp             HHTHHHHTSTTTS------SSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred             HHHHHHcCChhhh------cCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence            5666666653211      11122344443       5788999999999999 899999999999999986 4466 99


Q ss_pred             EEecCC
Q 012882          192 VATSNR  197 (454)
Q Consensus       192 V~ThN~  197 (454)
                      ++|||.
T Consensus       523 ivtHdl  528 (608)
T 3j16_B          523 IVEHDF  528 (608)
T ss_dssp             EECSCH
T ss_pred             EEeCCH
Confidence            999984

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.49  E-value=1.3e-14  Score=156.60  Aligned_cols=147  Identities=18%  Similarity=0.163  Sum_probs=86.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEE-------Eechh-HHHHHHHHH-------HHhhhh--hc---
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRF-------HFHEA-MLKINEHMH-------RLWKNQ--VA---   99 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv-------~f~~f-~~~~~~~i~-------~~~~~~--~~---   99 (454)
                      ..++.-++|+||||||||||+++|+|.+++. .|....       .+.+. .........       +..+..  ..   
T Consensus       114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~-~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~  192 (607)
T 3bk7_A          114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPN-LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAV  192 (607)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHTTSSCCC-TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTC
T ss_pred             CCCCCEEEEECCCCChHHHHHHHHhCCCCCC-CCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhc
Confidence            4567789999999999999999999998653 333100       01100 000000000       000000  00   


Q ss_pred             ccchhhhhhccccCCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCH
Q 012882          100 EKSLRSSISGWITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDV  171 (454)
Q Consensus       100 ~~t~~e~l~~~~~~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~  171 (454)
                      ..++.+++..     ......+++++..+++...      .......|++++       +||+.+|+||+||||+ +||+
T Consensus       193 ~~tv~e~l~~-----~~~~~~~~~~L~~lgL~~~------~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~  261 (607)
T 3bk7_A          193 KGKVRELLKK-----VDEVGKFEEVVKELELENV------LDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDI  261 (607)
T ss_dssp             CSBHHHHHHH-----TCCSSCHHHHHHHTTCTTG------GGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCH
T ss_pred             cccHHHHhhh-----hHHHHHHHHHHHHcCCCch------hCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCH
Confidence            0022222210     0011234455555555321      112233445544       6888999999999999 8999


Q ss_pred             HHHHHHHHHHHHHHhCCc-EEEEecCCC
Q 012882          172 FAIVALSGIVSRLLSTGT-VLVATSNRA  198 (454)
Q Consensus       172 ~~a~~L~~ll~~L~~~G~-vlV~ThN~~  198 (454)
                      ..+..+.++|..+.+.|. ||++|||..
T Consensus       262 ~~~~~l~~~L~~l~~~g~tvIivsHdl~  289 (607)
T 3bk7_A          262 RQRLKVARVIRRLANEGKAVLVVEHDLA  289 (607)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEecChH
Confidence            999999999999988777 999999854

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.47  E-value=1.4e-14  Score=154.35  Aligned_cols=47  Identities=30%  Similarity=0.348  Sum_probs=43.1

Q ss_pred             hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCCC
Q 012882          152 HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNRA  198 (454)
Q Consensus       152 rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~  198 (454)
                      +||+.+|+||+||||| +||+..+..+.++|..+.+.|+ ||++||++.
T Consensus       171 raL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~  219 (538)
T 1yqt_A          171 AALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA  219 (538)
T ss_dssp             HHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            6888999999999999 8999999999999999988777 999999853

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.46  E-value=3.6e-14  Score=151.15  Aligned_cols=46  Identities=22%  Similarity=0.297  Sum_probs=41.8

Q ss_pred             hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCCC
Q 012882          152 HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNRA  198 (454)
Q Consensus       152 rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~  198 (454)
                      +||+.+|+||+||||+ +||+..+..+.++|+++.+ |. ||++||+..
T Consensus       151 ~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~  198 (538)
T 3ozx_A          151 ASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI  198 (538)
T ss_dssp             HHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH
T ss_pred             HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH
Confidence            6888999999999999 8999999999999999976 66 999999853

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.45  E-value=4.2e-14  Score=152.44  Aligned_cols=151  Identities=15%  Similarity=0.149  Sum_probs=86.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHH---------HHHHHHHH-hhhhhc--ccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLK---------INEHMHRL-WKNQVA--EKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~---------~~~~i~~~-~~~~~~--~~t~~e~l  107 (454)
                      +.+++-++|+|||||||||||++|+|.+++. .|...  .......         +....... .+....  .....+++
T Consensus       100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~-~G~i~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (608)
T 3j16_B          100 PRPGQVLGLVGTNGIGKSTALKILAGKQKPN-LGRFD--DPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNI  176 (608)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHHTSSCCC-TTTTC--CSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTH
T ss_pred             CCCCCEEEEECCCCChHHHHHHHHhcCCCCC-CceEe--cccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhh
Confidence            3567789999999999999999999998753 33221  1000000         00000000 000000  00000000


Q ss_pred             hcccc------------CCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-
Q 012882          108 SGWIT------------NLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-  167 (454)
Q Consensus       108 ~~~~~------------~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-  167 (454)
                      .....            ........+++++..+++....      ......|++++       +||+.+|+||+||||+ 
T Consensus       177 ~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~------~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts  250 (608)
T 3j16_B          177 PRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVL------KRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSS  250 (608)
T ss_dssp             HHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGG------GSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTT
T ss_pred             hhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchh------CCChHHCCHHHHHHHHHHHHHHhCCCEEEEECccc
Confidence            00000            0011224555666666653311      11223344443       6788999999999999 


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCc-EEEEecCCCc
Q 012882          168 TVDVFAIVALSGIVSRLLSTGT-VLVATSNRAP  199 (454)
Q Consensus       168 ~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~P  199 (454)
                      +||+..+..+.++++++.+.|. ||++||+...
T Consensus       251 ~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~  283 (608)
T 3j16_B          251 YLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSV  283 (608)
T ss_dssp             TCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            8999999999999999988887 9999998543

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.39  E-value=1.3e-13  Score=160.43  Aligned_cols=157  Identities=13%  Similarity=0.120  Sum_probs=100.6

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh-hhcccchhhhhhccc
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN-QVAEKSLRSSISGWI  111 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~  111 (454)
                      ..++++-++|+||||||||||+++|.|..++   ..+.+.+++.      ...+++.+++++|+ .....|+.+|+....
T Consensus      1055 ~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p---~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~ 1131 (1284)
T 3g5u_A         1055 EVKKGQTLALVGSSGCGKSTVVQLLERFYDP---MAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGD 1131 (1284)
T ss_dssp             EECSSSEEEEECSSSTTHHHHHHHHTTSSCC---SEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCC
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccC
Confidence            3456788999999999999999999999874   2445555432      13445567777776 233468888874332


Q ss_pred             cCCCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          112 TNLPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       112 ~~~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                      .....+.......+...++....     +.+..+..-...+++++       |||+++|+||+||||| ++|+.+...+.
T Consensus      1132 ~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~ 1211 (1284)
T 3g5u_A         1132 NSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQ 1211 (1284)
T ss_dssp             SSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence            22122333333333333332210     00111111112344443       6888999999999999 89999999999


Q ss_pred             HHHHHHHhCCc-EEEEecCCCc
Q 012882          179 GIVSRLLSTGT-VLVATSNRAP  199 (454)
Q Consensus       179 ~ll~~L~~~G~-vlV~ThN~~P  199 (454)
                      +.+..+.+ |+ +|++||+...
T Consensus      1212 ~~l~~~~~-~~tvi~isH~l~~ 1232 (1284)
T 3g5u_A         1212 EALDKARE-GRTCIVIAHRLST 1232 (1284)
T ss_dssp             HHHHHHSS-SSCEEEECSCTTG
T ss_pred             HHHHHhCC-CCEEEEEecCHHH
Confidence            99988654 55 9999998754

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.36  E-value=9.3e-13  Score=153.25  Aligned_cols=152  Identities=14%  Similarity=0.148  Sum_probs=96.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh-hcccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ-VAEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~  112 (454)
                      .++++-++|+||||||||||+++|.|..++   ..+.+..++.      ...+++.++++.|+. .-..|+.+|+.....
T Consensus       413 i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~---~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~  489 (1284)
T 3g5u_A          413 VKSGQTVALVGNSGCGKSTTVQLMQRLYDP---LDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE  489 (1284)
T ss_dssp             ECTTCEEEEECCSSSSHHHHHHHTTTSSCC---SEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCC
Confidence            356788999999999999999999999874   2345544331      235566788888772 223488888743221


Q ss_pred             CCCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          113 NLPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       113 ~~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                      .  .......+.+....+....     +.+..+..-...+++++       |||+++|+||+||||| .+|+.+...+.+
T Consensus       490 ~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~  567 (1284)
T 3g5u_A          490 D--VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQA  567 (1284)
T ss_dssp             S--CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHH
T ss_pred             C--CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH
Confidence            1  2233333333332221100     00000000111234443       6888999999999999 899999999999


Q ss_pred             HHHHHHhCCc-EEEEecCC
Q 012882          180 IVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       180 ll~~L~~~G~-vlV~ThN~  197 (454)
                      .+..+.+ |+ +|++||+.
T Consensus       568 ~l~~~~~-~~t~i~itH~l  585 (1284)
T 3g5u_A          568 ALDKARE-GRTTIVIAHRL  585 (1284)
T ss_dssp             HHHHHHT-TSEEEEECSCH
T ss_pred             HHHHHcC-CCEEEEEecCH
Confidence            9988765 55 99999974

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=99.34  E-value=6e-13  Score=122.87  Aligned_cols=78  Identities=13%  Similarity=0.116  Sum_probs=56.1

Q ss_pred             CCcEEEeeCCCC--CCHHHHH-HHHHHHHHHHhCCcEEEEecCCCccchhcCC-------chhhhhHHHHHHHHhhcccc
Q 012882          157 GASILCFDEIQT--VDVFAIV-ALSGIVSRLLSTGTVLVATSNRAPWDLNQDG-------MQREIFQKLVAKLEKHCEII  226 (454)
Q Consensus       157 ~p~lL~LDEp~~--lD~~~a~-~L~~ll~~L~~~G~vlV~ThN~~P~dLy~~~-------l~r~~F~~~I~~L~~~~~vv  226 (454)
                      ++++|||||+..  ++..... .+..++......+..+|+|+|.+|++|...-       .+.....+++++|.++|.++
T Consensus       115 ~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~~~~~~~~~~~~~~~~~~~~~~Rl~~~~~~~  194 (202)
T 2w58_A          115 KVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAHHLTYSQRGEEEKVKAARIMERIRYLAYPI  194 (202)
T ss_dssp             HSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHHHHSCCCC-----CCHHHHHHHHHHHHEEEE
T ss_pred             CCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHhhhccCcchhHHHHHHHHHHHHhceEE
Confidence            478999999963  3322233 4556777776667778888899999987631       23335678899999999999


Q ss_pred             ccCCchhhh
Q 012882          227 PIGSEVDYR  235 (454)
Q Consensus       227 ~l~~~~DyR  235 (454)
                      .++++ |||
T Consensus       195 ~~~g~-~~R  202 (202)
T 2w58_A          195 EITGP-NRR  202 (202)
T ss_dssp             ECCSC-CCC
T ss_pred             eecCC-CCC
Confidence            99987 887

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.34  E-value=1.3e-13  Score=160.68  Aligned_cols=157  Identities=14%  Similarity=0.084  Sum_probs=105.0

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh-hhcccchhhhhhccccCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN-QVAEKSLRSSISGWITNL  114 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~  114 (454)
                      .++++-++|+|++|||||||+++|.+..++ ..|...+...+.    ..++++.+.+++|+ ..-..|+++|+..+....
T Consensus      1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~ 1180 (1321)
T 4f4c_A         1102 VEPGQTLALVGPSGCGKSTVVALLERFYDT-LGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPS 1180 (1321)
T ss_dssp             ECTTCEEEEECSTTSSTTSHHHHHTTSSCC-SSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTT
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHhcCccC-CCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCC
Confidence            356788999999999999999999999875 244444433221    34677788888887 334568999984433323


Q ss_pred             CCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882          115 PFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV  181 (454)
Q Consensus       115 ~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll  181 (454)
                      ..+.+...+.+...++.+.-     +.+..+..-...+++++       |||+++|+||+||||| .+|..+...+.+.|
T Consensus      1181 ~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l 1260 (1321)
T 4f4c_A         1181 SVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEAL 1260 (1321)
T ss_dssp             TSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHH
Confidence            33445555555555543310     11111111112234443       7888999999999999 89999999999998


Q ss_pred             HHHHhCCcEEEEecCC
Q 012882          182 SRLLSTGTVLVATSNR  197 (454)
Q Consensus       182 ~~L~~~G~vlV~ThN~  197 (454)
                      +++++..++|++||..
T Consensus      1261 ~~~~~~~TvI~IAHRL 1276 (1321)
T 4f4c_A         1261 DRAREGRTCIVIAHRL 1276 (1321)
T ss_dssp             TTTSSSSEEEEECSSS
T ss_pred             HHHcCCCEEEEeccCH
Confidence            8877644589999863

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.31  E-value=2.5e-12  Score=144.28  Aligned_cols=135  Identities=16%  Similarity=0.167  Sum_probs=87.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHh-CCCCc-ccCceEEEechhHHHHHHHHHHHhhh---hhcccchhhhhhccccCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYG-ATEGI-VKHRQRFHFHEAMLKINEHMHRLWKN---QVAEKSLRSSISGWITNL  114 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g-~l~~~-~~~k~rv~f~~f~~~~~~~i~~~~~~---~~~~~t~~e~l~~~~~~~  114 (454)
                      ...+.-++|+|||||||||||++|+| .+.+. .....++             .++.+.   ....+|+.+++...... 
T Consensus       458 I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~-------------~~v~q~~~~~~~~ltv~e~l~~~~~~-  523 (986)
T 2iw3_A          458 LKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRT-------------VYVEHDIDGTHSDTSVLDFVFESGVG-  523 (986)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCE-------------EETTCCCCCCCTTSBHHHHHHTTCSS-
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeE-------------EEEcccccccccCCcHHHHHHHhhcC-
Confidence            34677899999999999999999984 33210 0011111             122221   23445777776431111 


Q ss_pred             CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHh
Q 012882          115 PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLS  186 (454)
Q Consensus       115 ~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~  186 (454)
                       . ...++.++..+++...     ........|++++       ++|+.+|+||+||||+ +||+..+..|.++|..   
T Consensus       524 -~-~~~v~~~L~~lgL~~~-----~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---  593 (986)
T 2iw3_A          524 -T-KEAIKDKLIEFGFTDE-----MIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---  593 (986)
T ss_dssp             -C-HHHHHHHHHHTTCCHH-----HHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---
T ss_pred             -H-HHHHHHHHHHcCCChh-----hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---
Confidence             1 4556667777766211     0111223445554       6888999999999999 8999999999999988   


Q ss_pred             CCc-EEEEecCCC
Q 012882          187 TGT-VLVATSNRA  198 (454)
Q Consensus       187 ~G~-vlV~ThN~~  198 (454)
                      .|. +|++||+..
T Consensus       594 ~g~tvIivSHdl~  606 (986)
T 2iw3_A          594 CGITSITISHDSV  606 (986)
T ss_dssp             SCSEEEEECSCHH
T ss_pred             CCCEEEEEECCHH
Confidence            465 999999854

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.30  E-value=9.4e-13  Score=143.88  Aligned_cols=46  Identities=11%  Similarity=0.114  Sum_probs=42.6

Q ss_pred             hhhccCCc--EEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          152 HADQRGAS--ILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       152 rAL~~~p~--lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      +||+.+|+  ||+||||+ +||+..+..+.++|..+.+.|. ||++|||.
T Consensus       215 rAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~  264 (670)
T 3ux8_A          215 TQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE  264 (670)
T ss_dssp             HHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred             HHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            68889988  99999999 8999999999999999988887 99999985

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.26  E-value=3.6e-12  Score=143.00  Aligned_cols=44  Identities=20%  Similarity=0.283  Sum_probs=37.7

Q ss_pred             hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 012882          152 HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       152 rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      ++|+.+|+||+||||+ +||+.+...+.++|..+  .+.||++|||.
T Consensus       914 rAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~  958 (986)
T 2iw3_A          914 AGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSA  958 (986)
T ss_dssp             HHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCH
T ss_pred             HHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCH
Confidence            6888999999999999 89999988888877655  34599999984

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.26  E-value=3.9e-13  Score=126.13  Aligned_cols=44  Identities=20%  Similarity=0.316  Sum_probs=33.9

Q ss_pred             hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCCCccc
Q 012882          152 HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNRAPWD  201 (454)
Q Consensus       152 rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~P~d  201 (454)
                      +||+.+|+||+||||+ +    .+..+.++|.++ +.|. +| +||+....+
T Consensus       117 raL~~~p~lllLDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~~~~  162 (208)
T 3b85_A          117 RGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDITQVD  162 (208)
T ss_dssp             TTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC-----
T ss_pred             HHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-cCCCEEE-EECCHHHHh
Confidence            7889999999999999 6    777888888888 6677 66 999976444

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.26  E-value=8.4e-12  Score=145.60  Aligned_cols=154  Identities=12%  Similarity=0.126  Sum_probs=102.9

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh-hhcccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN-QVAEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~  112 (454)
                      .++++-++|+||+|||||||+++|.|..++   ..+.+..++.      ...+++.++++.|+ ..-+.|+.+|+..+..
T Consensus       441 i~~G~~vaivG~sGsGKSTll~ll~~~~~~---~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~  517 (1321)
T 4f4c_A          441 VNAGQTVALVGSSGCGKSTIISLLLRYYDV---LKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKE  517 (1321)
T ss_dssp             ECTTCEEEEEECSSSCHHHHHHHHTTSSCC---SEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCT
T ss_pred             ecCCcEEEEEecCCCcHHHHHHHhcccccc---ccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcc
Confidence            356788999999999999999999999974   2345544431      34677889999887 3456689999833211


Q ss_pred             CCCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          113 NLPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       113 ~~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                        ..+.+.+.+.+....+...-     +.+-.+..-...+++++       ||++++|+||+||||+ .+|..+...+.+
T Consensus       518 --~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~  595 (1321)
T 4f4c_A          518 --GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQ  595 (1321)
T ss_dssp             --TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHH
T ss_pred             --cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHH
Confidence              12344444444443332210     00000111111233333       7888999999999999 899999999999


Q ss_pred             HHHHHHhCCcEEEEecCCC
Q 012882          180 IVSRLLSTGTVLVATSNRA  198 (454)
Q Consensus       180 ll~~L~~~G~vlV~ThN~~  198 (454)
                      .|..+.+..++|++||+..
T Consensus       596 ~l~~~~~~~T~iiiaHrls  614 (1321)
T 4f4c_A          596 ALDKAAKGRTTIIIAHRLS  614 (1321)
T ss_dssp             HHHHHHTTSEEEEECSCTT
T ss_pred             HHHHHhCCCEEEEEcccHH
Confidence            9998876545999999753

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.25  E-value=2.5e-12  Score=116.41  Aligned_cols=46  Identities=7%  Similarity=-0.020  Sum_probs=39.2

Q ss_pred             hhhccCCcEEEeeCCC-CCCHH----------------HHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          152 HADQRGASILCFDEIQ-TVDVF----------------AIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       152 rAL~~~p~lL~LDEp~-~lD~~----------------~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      ++++.+|++|+||||+ ++|+.                ....+.+++..+.++|. +|++|||.
T Consensus        96 ral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~  159 (171)
T 4gp7_A           96 KDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSP  159 (171)
T ss_dssp             HHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSH
T ss_pred             HHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCH
Confidence            4556899999999999 89999                55888888888877787 99999984

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.24  E-value=4.2e-12  Score=112.74  Aligned_cols=49  Identities=22%  Similarity=0.260  Sum_probs=41.5

Q ss_pred             cCCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEecCCCccchhc
Q 012882          156 RGASILCFDEIQTVDVFAIVALSGIVSRLLSTGT-VLVATSNRAPWDLNQ  204 (454)
Q Consensus       156 ~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~P~dLy~  204 (454)
                      .+|++||+|||+.++...+..|.++++.+.+.|. ++|+|||.+|.+|..
T Consensus        82 ~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~  131 (149)
T 2kjq_A           82 FEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVI  131 (149)
T ss_dssp             GGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSC
T ss_pred             hCCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHccc
Confidence            4699999999997766668899999999988877 488899999988764

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.21  E-value=2.6e-12  Score=117.45  Aligned_cols=61  Identities=13%  Similarity=0.156  Sum_probs=43.6

Q ss_pred             hccCCcEEEeeC--CC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCCCccchhcCCchhhhhHHHHHHHHhh--ccccc
Q 012882          154 DQRGASILCFDE--IQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKH--CEIIP  227 (454)
Q Consensus       154 L~~~p~lL~LDE--p~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~--~~vv~  227 (454)
                      ++.+|++|+|||  |+ ++|+.....+.+++..   .+. +|++||..+.             .++++.+..+  |++++
T Consensus        96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~~h~-------------~~~~~~i~~r~~~~i~~  159 (178)
T 1ye8_A           96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIPIRDV-------------HPLVKEIRRLPGAVLIE  159 (178)
T ss_dssp             HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECCSSCC-------------SHHHHHHHTCTTCEEEE
T ss_pred             cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEccCCC-------------chHHHHHHhcCCcEEEE
Confidence            568999999999  99 8999988888877765   466 8888873221             1345556555  67776


Q ss_pred             cCC
Q 012882          228 IGS  230 (454)
Q Consensus       228 l~~  230 (454)
                      +..
T Consensus       160 ~~~  162 (178)
T 1ye8_A          160 LTP  162 (178)
T ss_dssp             CCT
T ss_pred             ecC
Confidence            554

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=99.18  E-value=5.5e-12  Score=125.15  Aligned_cols=80  Identities=14%  Similarity=0.130  Sum_probs=56.0

Q ss_pred             cCCcEEEeeCCCC--CCHHHHH-HHHHHHHHHHhCCcEEEEecCCCccchhcC------CchhhhhHHHHHHHHhhcccc
Q 012882          156 RGASILCFDEIQT--VDVFAIV-ALSGIVSRLLSTGTVLVATSNRAPWDLNQD------GMQREIFQKLVAKLEKHCEII  226 (454)
Q Consensus       156 ~~p~lL~LDEp~~--lD~~~a~-~L~~ll~~L~~~G~vlV~ThN~~P~dLy~~------~l~r~~F~~~I~~L~~~~~vv  226 (454)
                      .+++||||||+..  ++...+. .+..++......++.+|+|+|.+|++|...      |.++....+++++|.++|.++
T Consensus       213 ~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~~~~~~~~g~~~~~~~~i~dRl~~~~~~i  292 (308)
T 2qgz_A          213 KNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLERKWATIKGSDETWQAKRVMERVRYLAREF  292 (308)
T ss_dssp             HTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHTTCC--------CCCCSHHHHHHHHEEEE
T ss_pred             cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHhhccCccchhhhHHHHHHHHHhCEEE
Confidence            4689999999973  4433333 455678776555667888999999999874      222334557899999999999


Q ss_pred             ccCCchhhhh
Q 012882          227 PIGSEVDYRR  236 (454)
Q Consensus       227 ~l~~~~DyR~  236 (454)
                      .++|+ +||.
T Consensus       293 ~l~g~-s~R~  301 (308)
T 2qgz_A          293 HLEGA-NRRL  301 (308)
T ss_dssp             ECCSC-CCC-
T ss_pred             EecCC-cccc
Confidence            99997 9997

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.14  E-value=3.2e-11  Score=131.75  Aligned_cols=46  Identities=28%  Similarity=0.374  Sum_probs=41.6

Q ss_pred             hhhccCC---cEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          152 HADQRGA---SILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       152 rAL~~~p---~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      +||+.+|   +||+||||+ +||+.++..+.++|.++.+.|. ||++|||.
T Consensus       556 raL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~  606 (670)
T 3ux8_A          556 AELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL  606 (670)
T ss_dssp             HHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred             HHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            6777776   599999999 8999999999999999988887 99999985

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.13  E-value=1.2e-12  Score=121.98  Aligned_cols=46  Identities=9%  Similarity=-0.166  Sum_probs=39.0

Q ss_pred             hhhccCCcEEEeeCCC-CC----CHHHHHHHHHHHHHHHh-CCc-EEEEecCC
Q 012882          152 HADQRGASILCFDEIQ-TV----DVFAIVALSGIVSRLLS-TGT-VLVATSNR  197 (454)
Q Consensus       152 rAL~~~p~lL~LDEp~-~l----D~~~a~~L~~ll~~L~~-~G~-vlV~ThN~  197 (454)
                      .+|+.+|++++||||+ ++    |+..+..+.+++.++.. .|. ++++|||.
T Consensus       136 S~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl  188 (207)
T 1znw_A          136 TVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRL  188 (207)
T ss_dssp             EEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCH
Confidence            3788999999999998 65    78888999999999974 466 99999984

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.11  E-value=1.8e-10  Score=118.15  Aligned_cols=44  Identities=32%  Similarity=0.367  Sum_probs=40.0

Q ss_pred             hhhccCC--cEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecC
Q 012882          152 HADQRGA--SILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSN  196 (454)
Q Consensus       152 rAL~~~p--~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN  196 (454)
                      ++|+.+|  ++|+||||+ +||+..+..|.++|..+. +|. ||++||+
T Consensus       308 ~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~  355 (415)
T 4aby_A          308 VSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHL  355 (415)
T ss_dssp             HHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSC
T ss_pred             HHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCc
Confidence            5778899  999999999 899999999999999997 455 9999997

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.10  E-value=1.7e-10  Score=115.32  Aligned_cols=61  Identities=11%  Similarity=0.218  Sum_probs=43.5

Q ss_pred             ccCCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCc
Q 012882          155 QRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGT-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSE  231 (454)
Q Consensus       155 ~~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~  231 (454)
                      ..+|+++++|||+.+|...+..|.+++.+... ++ +|++||+..  .+             +..|..+|.++.+...
T Consensus       132 ~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~-~~~~Il~t~~~~--~l-------------~~~l~sR~~~~~~~~~  193 (354)
T 1sxj_E          132 AHRYKCVIINEANSLTKDAQAALRRTMEKYSK-NIRLIMVCDSMS--PI-------------IAPIKSQCLLIRCPAP  193 (354)
T ss_dssp             --CCEEEEEECTTSSCHHHHHHHHHHHHHSTT-TEEEEEEESCSC--SS-------------CHHHHTTSEEEECCCC
T ss_pred             CCCCeEEEEeCccccCHHHHHHHHHHHHhhcC-CCEEEEEeCCHH--HH-------------HHHHHhhceEEecCCc
Confidence            36899999999999999999999988888644 45 666666532  11             2346678877777554

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.08  E-value=5e-10  Score=113.61  Aligned_cols=42  Identities=14%  Similarity=0.181  Sum_probs=39.2

Q ss_pred             cCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          156 RGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       156 ~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      .+|++|+||||+ +||+.++..+.++|..+.+.|. ||++||+.
T Consensus       302 ~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~  345 (365)
T 3qf7_A          302 GRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDR  345 (365)
T ss_dssp             TTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCH
T ss_pred             CCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence            799999999999 8999999999999999988887 99999984

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.98  E-value=8.5e-10  Score=112.79  Aligned_cols=141  Identities=23%  Similarity=0.298  Sum_probs=88.0

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH----HHHHHHHHHhhhhhcccchhhhhhccccCC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML----KINEHMHRLWKNQVAEKSLRSSISGWITNL  114 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~----~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~  114 (454)
                      ...+|+|+.||||+|||||+|.+++++.+..+   -..+...++..    +..+.+.                       
T Consensus       178 gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~---f~~v~~s~l~sk~vGese~~vr-----------------------  231 (405)
T 4b4t_J          178 GIAQPKGVILYGPPGTGKTLLARAVAHHTDCK---FIRVSGAELVQKYIGEGSRMVR-----------------------  231 (405)
T ss_dssp             TCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE---EEEEEGGGGSCSSTTHHHHHHH-----------------------
T ss_pred             CCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC---ceEEEhHHhhccccchHHHHHH-----------------------
Confidence            45679999999999999999999999976421   12232222110    0000000                       


Q ss_pred             CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCCCC-----------CHHHHHHHHHHHHH
Q 012882          115 PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTV-----------DVFAIVALSGIVSR  183 (454)
Q Consensus       115 ~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~~l-----------D~~~a~~L~~ll~~  183 (454)
                                              .+...|+.         ..|.||+|||+..+           |......+..+|..
T Consensus       232 ------------------------~lF~~Ar~---------~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~  278 (405)
T 4b4t_J          232 ------------------------ELFVMARE---------HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQ  278 (405)
T ss_dssp             ------------------------HHHHHHHH---------TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHH
T ss_pred             ------------------------HHHHHHHH---------hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHh
Confidence                                    01223443         46999999999721           22344567777777


Q ss_pred             HHh----CCcEEEEecCCC----ccchhcCCchhhhhHH------HHHHHHhhccccccCCchhhhhhc
Q 012882          184 LLS----TGTVLVATSNRA----PWDLNQDGMQREIFQK------LVAKLEKHCEIIPIGSEVDYRRLI  238 (454)
Q Consensus       184 L~~----~G~vlV~ThN~~----P~dLy~~~l~r~~F~~------~I~~L~~~~~vv~l~~~~DyR~~~  238 (454)
                      +-.    .++++|+|+|++    |+-+.++++.+..++|      ...+++.++.-+.++...|+....
T Consensus       279 lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA  347 (405)
T 4b4t_J          279 LDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVA  347 (405)
T ss_dssp             HHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHH
T ss_pred             hhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHH
Confidence            642    255888888975    3445556776655443      356677777777887777887654

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=98.98  E-value=1.4e-11  Score=128.62  Aligned_cols=139  Identities=8%  Similarity=0.007  Sum_probs=76.7

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccC-c-eEEEechhHHHHHHHHHHHhhhh-----hcccchhhhhhcccc-
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKH-R-QRFHFHEAMLKINEHMHRLWKNQ-----VAEKSLRSSISGWIT-  112 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~-k-~rv~f~~f~~~~~~~i~~~~~~~-----~~~~t~~e~l~~~~~-  112 (454)
                      ..+.-++|+||||||||||+++|+|..++ ..+ . ..+..     +..+.+.+++|..     ...+++.++++.... 
T Consensus       136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p-~~G~~pI~vdg-----~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~  209 (460)
T 2npi_A          136 FEGPRVVIVGGSQTGKTSLSRTLCSYALK-FNAYQPLYINL-----DPQQPIFTVPGCISATPISDILDAQLPTWGQSLT  209 (460)
T ss_dssp             SSCCCEEEEESTTSSHHHHHHHHHHTTHH-HHCCCCEEEEC-----CTTSCSSSCSSCCEEEECCSCCCTTCTTCSCBCB
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCcccc-cCCceeEEEcC-----CccCCeeeeccchhhcccccccchhhhhcccccc
Confidence            35667999999999999999999998863 233 3 33332     1223345555542     122355555532110 


Q ss_pred             CCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hh--hccCCcE----EEeeC-CC-CCCHHHHHHH
Q 012882          113 NLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HA--DQRGASI----LCFDE-IQ-TVDVFAIVAL  177 (454)
Q Consensus       113 ~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rA--L~~~p~l----L~LDE-p~-~lD~~~a~~L  177 (454)
                      ........+..++..+++...      ..  ...+++++       ++  |+.+|++    |+||| |+ ++|+. ...|
T Consensus       210 ~~~~~~~~~~~ll~~~gl~~~------~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l  280 (460)
T 2npi_A          210 SGATLLHNKQPMVKNFGLERI------NE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAEL  280 (460)
T ss_dssp             SSCCSSCCBCCEECCCCSSSG------GG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHH
T ss_pred             cCcchHHHHHHHHHHhCCCcc------cc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHH
Confidence            000000011111111111110      00  12222222       45  7799999    99999 99 79998 6666


Q ss_pred             HHHHHHHHhCCc-EEEEecCC
Q 012882          178 SGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       178 ~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      .+++.++   |. ++++||+.
T Consensus       281 ~~l~~~~---~~tviiVth~~  298 (460)
T 2npi_A          281 HHIIEKL---NVNIMLVLCSE  298 (460)
T ss_dssp             HHHHHHT---TCCEEEEECCS
T ss_pred             HHHHHHh---CCCEEEEEccC
Confidence            6666553   55 99999985

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=98.97  E-value=3.3e-10  Score=125.82  Aligned_cols=46  Identities=15%  Similarity=0.265  Sum_probs=41.6

Q ss_pred             hhhccC---CcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          152 HADQRG---ASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       152 rAL~~~---p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      ++|+.+   |+||+||||| +||+.+...+.++|.++.+.|. |||+|||.
T Consensus       743 raL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl  793 (842)
T 2vf7_A          743 TELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKM  793 (842)
T ss_dssp             HTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred             HHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            577775   7999999999 8999999999999999998887 99999984

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=98.96  E-value=4.1e-10  Score=127.86  Aligned_cols=120  Identities=16%  Similarity=0.101  Sum_probs=71.3

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHH-HHhhhhhcccchhhhhhccccCCCCChHHH
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMH-RLWKNQVAEKSLRSSISGWITNLPFDSKVM  121 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~-~~~~~~~~~~t~~e~l~~~~~~~~~~~~~~  121 (454)
                      ++.++|+||||+||||||+++ |.+.  +               ...++ +++++. ..+++.+.++......       
T Consensus       789 g~i~~ItGpNgsGKSTlLr~i-Gl~~--~---------------~aqiG~~Vpq~~-~~l~v~d~I~~rig~~-------  842 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQA-GLLA--V---------------MAQMGCYVPAEV-CRLTPIDRVFTRLGAS-------  842 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHH-HHHH--H---------------HHTTTCCEESSE-EEECCCSBEEEECC---------
T ss_pred             CcEEEEECCCCCChHHHHHHH-HHHH--H---------------HhheeEEeccCc-CCCCHHHHHHHHcCCH-------
Confidence            577999999999999999999 8653  1               01122 333321 2344444444322110       


Q ss_pred             HHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-CCCHHHH-HHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          122 EWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-TVDVFAI-VALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       122 e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-~lD~~~a-~~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      +.+..  +....   ..-+..++.     .++++.+|+||+||||+ ++|+.+. .+++.++..+.++ |. +|++||+.
T Consensus       843 d~~~~--~~stf---~~em~~~a~-----al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~  912 (1022)
T 2o8b_B          843 DRIMS--GESTF---FVELSETAS-----ILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH  912 (1022)
T ss_dssp             ---------CHH---HHHHHHHHH-----HHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH
T ss_pred             HHHhh--chhhh---HHHHHHHHH-----HHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH
Confidence            00000  00000   000011111     13556899999999999 9999984 6688999999876 77 99999985


Q ss_pred             C
Q 012882          198 A  198 (454)
Q Consensus       198 ~  198 (454)
                      .
T Consensus       913 e  913 (1022)
T 2o8b_B          913 S  913 (1022)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=98.96  E-value=2.1e-09  Score=120.41  Aligned_cols=46  Identities=20%  Similarity=0.305  Sum_probs=40.8

Q ss_pred             hhhccC---CcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          152 HADQRG---ASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       152 rAL~~~---p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      ++|+++   |+||+||||| +||+.+...|.++|.++.++|. ||++|||.
T Consensus       818 raL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL  868 (916)
T 3pih_A          818 SELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL  868 (916)
T ss_dssp             HHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred             HHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            566665   4799999999 8999999999999999998887 99999983

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.95  E-value=7.1e-10  Score=103.55  Aligned_cols=38  Identities=29%  Similarity=0.399  Sum_probs=29.2

Q ss_pred             hhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           27 RKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        27 ~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ..++.+++.   ..+++.-+.|+||||||||||+++|++..
T Consensus        12 ~~LD~~l~g---gi~~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           12 KSLDKLLGG---GIETQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             HHHHHHTTS---SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             hhHHhHhcC---CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            345665532   34567779999999999999999999954

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.90  E-value=3.9e-09  Score=109.25  Aligned_cols=145  Identities=19%  Similarity=0.249  Sum_probs=85.6

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS  118 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~  118 (454)
                      ...+|+|+.||||+|||||+|.+++++.+..+   -..+...++..       ..                      .. 
T Consensus       211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~---~~~v~~s~l~s-------k~----------------------~G-  257 (437)
T 4b4t_L          211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN---FIFSPASGIVD-------KY----------------------IG-  257 (437)
T ss_dssp             CCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE---EEEEEGGGTCC-------SS----------------------SS-
T ss_pred             CCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC---EEEEehhhhcc-------cc----------------------ch-
Confidence            45689999999999999999999999976421   12222211110       00                      00 


Q ss_pred             HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCCC-----------CCHHHHHHHHHHHHHHHh-
Q 012882          119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT-----------VDVFAIVALSGIVSRLLS-  186 (454)
Q Consensus       119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~~-----------lD~~~a~~L~~ll~~L~~-  186 (454)
                      .....+             ..+...|+.         ..|.||++||+..           .|......+..+|..+-. 
T Consensus       258 ese~~i-------------r~~F~~A~~---------~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~  315 (437)
T 4b4t_L          258 ESARII-------------REMFAYAKE---------HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF  315 (437)
T ss_dssp             HHHHHH-------------HHHHHHHHH---------SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS
T ss_pred             HHHHHH-------------HHHHHHHHh---------cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc
Confidence            000000             001223333         5799999999972           133344566677777732 


Q ss_pred             ---CCcEEEEecCCC----ccchhcCCchhhhhHH------HHHHHHhhccccccCCchhhhhhc
Q 012882          187 ---TGTVLVATSNRA----PWDLNQDGMQREIFQK------LVAKLEKHCEIIPIGSEVDYRRLI  238 (454)
Q Consensus       187 ---~G~vlV~ThN~~----P~dLy~~~l~r~~F~~------~I~~L~~~~~vv~l~~~~DyR~~~  238 (454)
                         .++++|+|+|++    |+-+.++++.+..++|      ...+++.++.-+.+.+..|+....
T Consensus       316 ~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA  380 (437)
T 4b4t_L          316 DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAV  380 (437)
T ss_dssp             SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHH
T ss_pred             cCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHH
Confidence               245888888974    3444455666554433      345677777777777777887654

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.89  E-value=2.1e-09  Score=111.13  Aligned_cols=145  Identities=21%  Similarity=0.285  Sum_probs=85.5

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS  118 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~  118 (454)
                      ..++|+|+.||||+|||||+|++++++.+..+   -..+....+..       ..                      ...
T Consensus       211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~---f~~v~~s~l~~-------~~----------------------vGe  258 (434)
T 4b4t_M          211 GIRAPKGALMYGPPGTGKTLLARACAAQTNAT---FLKLAAPQLVQ-------MY----------------------IGE  258 (434)
T ss_dssp             CCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE---EEEEEGGGGCS-------SC----------------------SSH
T ss_pred             CCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC---EEEEehhhhhh-------cc----------------------cch
Confidence            45689999999999999999999999976421   11222211110       00                      000


Q ss_pred             HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCCC-----------CCHHHHHHHHHHHHHHHh-
Q 012882          119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT-----------VDVFAIVALSGIVSRLLS-  186 (454)
Q Consensus       119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~~-----------lD~~~a~~L~~ll~~L~~-  186 (454)
                       ....+             ..+...|+.         ..|.||++||...           -+......+..+|..+-. 
T Consensus       259 -se~~i-------------r~lF~~A~~---------~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~  315 (434)
T 4b4t_M          259 -GAKLV-------------RDAFALAKE---------KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF  315 (434)
T ss_dssp             -HHHHH-------------HHHHHHHHH---------HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS
T ss_pred             -HHHHH-------------HHHHHHHHh---------cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc
Confidence             00000             011223443         3599999999851           123334556667776632 


Q ss_pred             ---CCcEEEEecCCC----ccchhcCCchhhhhHH------HHHHHHhhccccccCCchhhhhhc
Q 012882          187 ---TGTVLVATSNRA----PWDLNQDGMQREIFQK------LVAKLEKHCEIIPIGSEVDYRRLI  238 (454)
Q Consensus       187 ---~G~vlV~ThN~~----P~dLy~~~l~r~~F~~------~I~~L~~~~~vv~l~~~~DyR~~~  238 (454)
                         .++++|+|+|++    |+-+.++++.+..++|      ...+++.++.-+.++...|+....
T Consensus       316 ~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA  380 (434)
T 4b4t_M          316 SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELA  380 (434)
T ss_dssp             CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHH
T ss_pred             CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHH
Confidence               355888898975    3444556666654443      345677777777777777887654

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=98.87  E-value=2.3e-09  Score=119.73  Aligned_cols=46  Identities=28%  Similarity=0.361  Sum_probs=41.2

Q ss_pred             hhhccC---CcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          152 HADQRG---ASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       152 rAL~~~---p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      ++|+.+   |+||+||||| +||+.+...|.++|..+.+.|. ||++|||.
T Consensus       858 raL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl  908 (972)
T 2r6f_A          858 AELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL  908 (972)
T ss_dssp             HHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred             HHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            567765   5999999999 8999999999999999988887 99999984

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.87  E-value=7.9e-09  Score=116.11  Aligned_cols=45  Identities=18%  Similarity=0.234  Sum_probs=37.8

Q ss_pred             ccCCcEEEeeCCC-CCCHHHHHHH-HHHHHHHHh-CCc-EEEEecCCCc
Q 012882          155 QRGASILCFDEIQ-TVDVFAIVAL-SGIVSRLLS-TGT-VLVATSNRAP  199 (454)
Q Consensus       155 ~~~p~lL~LDEp~-~lD~~~a~~L-~~ll~~L~~-~G~-vlV~ThN~~P  199 (454)
                      +.+|+||+||||+ ++|+.+...+ +.++..+.+ .|. +|++||+..-
T Consensus       739 a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el  787 (934)
T 3thx_A          739 ATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHEL  787 (934)
T ss_dssp             CCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGG
T ss_pred             ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHH
Confidence            4789999999999 9999988777 788888876 477 9999998533

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.87  E-value=3.9e-09  Score=108.45  Aligned_cols=141  Identities=21%  Similarity=0.279  Sum_probs=85.5

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH----HHHHHHHHHhhhhhcccchhhhhhccccCC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML----KINEHMHRLWKNQVAEKSLRSSISGWITNL  114 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~----~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~  114 (454)
                      ..++|+|+.||||+|||||+|.+++++.+..+   -..+...++..    +..+.+.                       
T Consensus       212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~---fi~v~~s~l~sk~vGesek~ir-----------------------  265 (437)
T 4b4t_I          212 GIKPPKGVILYGAPGTGKTLLAKAVANQTSAT---FLRIVGSELIQKYLGDGPRLCR-----------------------  265 (437)
T ss_dssp             TCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE---EEEEESGGGCCSSSSHHHHHHH-----------------------
T ss_pred             CCCCCCCCceECCCCchHHHHHHHHHHHhCCC---EEEEEHHHhhhccCchHHHHHH-----------------------
Confidence            45689999999999999999999999876421   12222221110    0000000                       


Q ss_pred             CCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCCC-----------CCHHHHHHHHHHHHH
Q 012882          115 PFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT-----------VDVFAIVALSGIVSR  183 (454)
Q Consensus       115 ~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~~-----------lD~~~a~~L~~ll~~  183 (454)
                                              .+...|+.         ..|.||++||+..           -+......+..+|..
T Consensus       266 ------------------------~lF~~Ar~---------~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~  312 (437)
T 4b4t_I          266 ------------------------QIFKVAGE---------NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQ  312 (437)
T ss_dssp             ------------------------HHHHHHHH---------TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHH
T ss_pred             ------------------------HHHHHHHh---------cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHH
Confidence                                    11223443         4699999999872           123345566677776


Q ss_pred             HHh----CCcEEEEecCCC----ccchhcCCchhhhhHH------HHHHHHhhccccccCCchhhhhhc
Q 012882          184 LLS----TGTVLVATSNRA----PWDLNQDGMQREIFQK------LVAKLEKHCEIIPIGSEVDYRRLI  238 (454)
Q Consensus       184 L~~----~G~vlV~ThN~~----P~dLy~~~l~r~~F~~------~I~~L~~~~~vv~l~~~~DyR~~~  238 (454)
                      +-.    .++++|+|+|++    |+-+.++++.+..++|      ...+|+.++.-+.++...|+....
T Consensus       313 lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA  381 (437)
T 4b4t_I          313 LDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLV  381 (437)
T ss_dssp             HHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHH
T ss_pred             hhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHH
Confidence            642    245888888974    3444456666544432      345677777777777777877654

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=98.86  E-value=2e-08  Score=100.61  Aligned_cols=46  Identities=22%  Similarity=0.158  Sum_probs=40.8

Q ss_pred             hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          152 HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       152 rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      ++++.+|++|+||||+ +||+..+..+.++|..+.+.|. +|++||+.
T Consensus       267 ~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~  314 (339)
T 3qkt_A          267 LYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE  314 (339)
T ss_dssp             HHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG
T ss_pred             HHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH
Confidence            4567899999999999 8999999999999999877776 88999983

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.86  E-value=8e-10  Score=107.55  Aligned_cols=135  Identities=9%  Similarity=0.089  Sum_probs=64.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH---HHHHHHHHHhhh--hhcccchhhhh-hccccCCCCCh
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML---KINEHMHRLWKN--QVAEKSLRSSI-SGWITNLPFDS  118 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~---~~~~~i~~~~~~--~~~~~t~~e~l-~~~~~~~~~~~  118 (454)
                      .++|+||||||||||+++|+|...+. .+  .+.+.+...   ...+.++++.|+  ....+|+.+++ ++.........
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~-~G--~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~   80 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSR-KA--SSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW   80 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCC-CC--ccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence            47899999999999999999987532 22  332221100   000112223332  23345666665 22111111111


Q ss_pred             HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhh---hhc-cCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEE
Q 012882          119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQH---ADQ-RGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVA  193 (454)
Q Consensus       119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~r---AL~-~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~  193 (454)
                      ......+.          ..........++++++   +++ .-+.++++|||+ ++|+.+.    +++..+.+...+|++
T Consensus        81 ~~i~~~~~----------~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~----~~l~~L~~~~~vI~V  146 (270)
T 3sop_A           81 EPIEKYIN----------EQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDL----EFMKHLSKVVNIIPV  146 (270)
T ss_dssp             HHHHHHHH----------HHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHH----HHHHHHHTTSEEEEE
T ss_pred             HHHHHHHH----------HHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHH----HHHHHHHhcCcEEEE
Confidence            22222221          0112345556666652   111 134599999998 8999884    445556555235555


Q ss_pred             ecC
Q 012882          194 TSN  196 (454)
Q Consensus       194 ThN  196 (454)
                      .+.
T Consensus       147 i~K  149 (270)
T 3sop_A          147 IAK  149 (270)
T ss_dssp             ETT
T ss_pred             Eec
Confidence            543

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.85  E-value=3.8e-09  Score=118.42  Aligned_cols=44  Identities=14%  Similarity=0.237  Sum_probs=37.5

Q ss_pred             ccCCcEEEeeCCC-CCCHHHHHHHH-HHHHHHHh-CCc-EEEEecCCC
Q 012882          155 QRGASILCFDEIQ-TVDVFAIVALS-GIVSRLLS-TGT-VLVATSNRA  198 (454)
Q Consensus       155 ~~~p~lL~LDEp~-~lD~~~a~~L~-~ll~~L~~-~G~-vlV~ThN~~  198 (454)
                      +.+|+||+||||+ ++|+.+...+. .++..+.+ .|. +|++||+..
T Consensus       750 a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e  797 (918)
T 3thx_B          750 ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPP  797 (918)
T ss_dssp             CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH
Confidence            3789999999999 99999888876 88888865 577 999999854

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.82  E-value=9.9e-09  Score=105.99  Aligned_cols=145  Identities=23%  Similarity=0.286  Sum_probs=85.1

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS  118 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~  118 (454)
                      +..+|+|+.||||+|||||+|.+++++.+..+   -..+...++..       ..   .                    .
T Consensus       202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~---~~~v~~~~l~~-------~~---~--------------------G  248 (428)
T 4b4t_K          202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA---FIRVNGSEFVH-------KY---L--------------------G  248 (428)
T ss_dssp             CCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE---EEEEEGGGTCC-------SS---C--------------------S
T ss_pred             CCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---eEEEecchhhc-------cc---c--------------------c
Confidence            45689999999999999999999999876421   12222221110       00   0                    0


Q ss_pred             HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCC-----------CCCHHHHHHHHHHHHHHHh-
Q 012882          119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQ-----------TVDVFAIVALSGIVSRLLS-  186 (454)
Q Consensus       119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~-----------~lD~~~a~~L~~ll~~L~~-  186 (454)
                      .....+             ..+...|+.         ..|.|+++||..           +-|......+..+|..+-. 
T Consensus       249 e~e~~i-------------r~lF~~A~~---------~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~  306 (428)
T 4b4t_K          249 EGPRMV-------------RDVFRLARE---------NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF  306 (428)
T ss_dssp             HHHHHH-------------HHHHHHHHH---------TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS
T ss_pred             hhHHHH-------------HHHHHHHHH---------cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC
Confidence            000000             001223433         469999999984           1233445667777777642 


Q ss_pred             ---CCcEEEEecCCC----ccchhcCCchhhhhHH-------HHHHHHhhccccccCCchhhhhhc
Q 012882          187 ---TGTVLVATSNRA----PWDLNQDGMQREIFQK-------LVAKLEKHCEIIPIGSEVDYRRLI  238 (454)
Q Consensus       187 ---~G~vlV~ThN~~----P~dLy~~~l~r~~F~~-------~I~~L~~~~~vv~l~~~~DyR~~~  238 (454)
                         .|+++|+|+|++    |+-+.++++.+...+|       ...+++.++.-+.+....|+....
T Consensus       307 ~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA  372 (428)
T 4b4t_K          307 DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLI  372 (428)
T ss_dssp             CSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHH
T ss_pred             CCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHH
Confidence               356888888875    4445556666654332       234566666666676777776543

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.81  E-value=8e-09  Score=107.06  Aligned_cols=145  Identities=21%  Similarity=0.273  Sum_probs=85.4

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhhhhcccchhhhhhccccCCCCCh
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS  118 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~~~~~~t~~e~l~~~~~~~~~~~  118 (454)
                      ...+|+|+.|+||+|||||+|.+++++.+..+   -..+....+..           .                  ....
T Consensus       239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~---fi~vs~s~L~s-----------k------------------~vGe  286 (467)
T 4b4t_H          239 GIDPPKGILLYGPPGTGKTLCARAVANRTDAT---FIRVIGSELVQ-----------K------------------YVGE  286 (467)
T ss_dssp             TCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE---EEEEEGGGGCC-----------C------------------SSSH
T ss_pred             CCCCCCceEeeCCCCCcHHHHHHHHHhccCCC---eEEEEhHHhhc-----------c------------------cCCH
Confidence            34689999999999999999999999976421   12222221110           0                  0000


Q ss_pred             HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCCCC-----------CHHHHHHHHHHHHHHHh-
Q 012882          119 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTV-----------DVFAIVALSGIVSRLLS-  186 (454)
Q Consensus       119 ~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~~l-----------D~~~a~~L~~ll~~L~~-  186 (454)
                       ....+             ..+...|+.         ..|.||++||...+           +......+..+|..+-. 
T Consensus       287 -sek~i-------------r~lF~~Ar~---------~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~  343 (467)
T 4b4t_H          287 -GARMV-------------RELFEMART---------KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF  343 (467)
T ss_dssp             -HHHHH-------------HHHHHHHHH---------TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS
T ss_pred             -HHHHH-------------HHHHHHHHh---------cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc
Confidence             00000             001223333         46999999999721           12334456666766632 


Q ss_pred             ---CCcEEEEecCCC----ccchhcCCchhhhhHH------HHHHHHhhccccccCCchhhhhhc
Q 012882          187 ---TGTVLVATSNRA----PWDLNQDGMQREIFQK------LVAKLEKHCEIIPIGSEVDYRRLI  238 (454)
Q Consensus       187 ---~G~vlV~ThN~~----P~dLy~~~l~r~~F~~------~I~~L~~~~~vv~l~~~~DyR~~~  238 (454)
                         .++++|+|+|++    |+-+.++++.+..++|      ...+|+.++.-+.++...|+....
T Consensus       344 ~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA  408 (467)
T 4b4t_H          344 DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELIS  408 (467)
T ss_dssp             CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHH
T ss_pred             CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHH
Confidence               245788888975    3334456676654433      356677777777787777887654

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=98.81  E-value=1.8e-08  Score=99.70  Aligned_cols=48  Identities=19%  Similarity=0.294  Sum_probs=37.3

Q ss_pred             cCCcEEEeeCCCC--CCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchh
Q 012882          156 RGASILCFDEIQT--VDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLN  203 (454)
Q Consensus       156 ~~p~lL~LDEp~~--lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy  203 (454)
                      .++.+|++||++.  .+......+..++..+.+.|..+|+|++.+|.++.
T Consensus        97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~  146 (324)
T 1l8q_A           97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLD  146 (324)
T ss_dssp             HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCT
T ss_pred             cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHH
Confidence            3589999999994  44467788889999988888866667777777653

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.80  E-value=1.8e-08  Score=104.61  Aligned_cols=47  Identities=26%  Similarity=0.354  Sum_probs=37.0

Q ss_pred             CCcEEEeeCCC-CC-CHHHHHHHHHHHHHHHhCCcEEEEecCCCccchh
Q 012882          157 GASILCFDEIQ-TV-DVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLN  203 (454)
Q Consensus       157 ~p~lL~LDEp~-~l-D~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy  203 (454)
                      ++++|++||++ .. +......+..++..+.+.|..+|+|+|.+|.++.
T Consensus       194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~  242 (440)
T 2z4s_A          194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLS  242 (440)
T ss_dssp             TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCS
T ss_pred             CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHH
Confidence            79999999999 33 3367788899999998888866667777777753

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.75  E-value=5.6e-09  Score=102.17  Aligned_cols=45  Identities=22%  Similarity=0.285  Sum_probs=32.0

Q ss_pred             hhccCCcEEEeeCCCC-C------CH-HHHHHHHHHHHHHHh-CCc-EEEEecCC
Q 012882          153 ADQRGASILCFDEIQT-V------DV-FAIVALSGIVSRLLS-TGT-VLVATSNR  197 (454)
Q Consensus       153 AL~~~p~lL~LDEp~~-l------D~-~~a~~L~~ll~~L~~-~G~-vlV~ThN~  197 (454)
                      ++..+|++|++|||+. +      |. .....+.+.|..+.+ .|+ ||++||+.
T Consensus       143 ~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~  197 (296)
T 1cr0_A          143 RSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK  197 (296)
T ss_dssp             HHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred             HHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecC
Confidence            4568999999999994 3      43 455667777888764 477 88888875

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.74  E-value=3.1e-09  Score=102.85  Aligned_cols=28  Identities=18%  Similarity=0.208  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .++.-++|+||||||||||++++.|.++
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~   50 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDYIN   50 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence            3556689999999999999999999875

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.73  E-value=1.6e-08  Score=107.25  Aligned_cols=139  Identities=16%  Similarity=0.142  Sum_probs=80.2

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHH--HHhCCCCcccCceEEEechhHHHH---HHHHHHHhhhhhcccchhhhhhc-cccC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDM--FYGATEGIVKHRQRFHFHEAMLKI---NEHMHRLWKNQVAEKSLRSSISG-WITN  113 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~l--l~g~l~~~~~~k~rv~f~~f~~~~---~~~i~~~~~~~~~~~t~~e~l~~-~~~~  113 (454)
                      .+.+.-++|+||||||||||+++  +.|..++ ..+...+.+.+.....   .+.++++.|+...    .++++. ....
T Consensus        36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~-~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~----~~~l~~~~~~~  110 (525)
T 1tf7_A           36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF-DEPGVFVTFEETPQDIIKNARSFGWDLAKLVD----EGKLFILDASP  110 (525)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHHH-CCCEEEEESSSCHHHHHHHHGGGTCCHHHHHH----TTSEEEEECCC
T ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEEeCCHHHHHHHHHHcCCChHHhhc----cCcEEEEecCc
Confidence            34677899999999999999999  5687752 1344555554422111   1223333332110    011110 0000


Q ss_pred             CCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhhhhhccCCcEEEeeCCCC------CCHHHHHHHHHHHHHHHhC
Q 012882          114 LPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT------VDVFAIVALSGIVSRLLST  187 (454)
Q Consensus       114 ~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~rAL~~~p~lL~LDEp~~------lD~~~a~~L~~ll~~L~~~  187 (454)
                         ... ...++..+++      ..........+++      .+|++|+||||+.      +|+..+..+.+++..+.+.
T Consensus       111 ---~~~-~~~~l~~~~l------~~~~~~~~~~LS~------g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~  174 (525)
T 1tf7_A          111 ---DPE-GQEVVGGFDL------SALIERINYAIQK------YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQI  174 (525)
T ss_dssp             ---CSS-CCSCCSSHHH------HHHHHHHHHHHHH------HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ---ccc-hhhhhcccCH------HHHHHHHHHHHHH------cCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHC
Confidence               000 0001111111      1223445555554      4799999999982      5889999999999999888


Q ss_pred             Cc-EEEEecCCCc
Q 012882          188 GT-VLVATSNRAP  199 (454)
Q Consensus       188 G~-vlV~ThN~~P  199 (454)
                      |+ +|++||+...
T Consensus       175 g~tvl~itH~~~~  187 (525)
T 1tf7_A          175 GATTVMTTERIEE  187 (525)
T ss_dssp             TCEEEEEEECSSS
T ss_pred             CCEEEEEecCCCC
Confidence            88 8889998654

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.72  E-value=2.8e-08  Score=98.81  Aligned_cols=41  Identities=17%  Similarity=0.324  Sum_probs=36.2

Q ss_pred             cCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          156 RGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       156 ~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      .+|++|+||||+ +||+.....+.+++..+. .|. +|++||+.
T Consensus       240 ~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~  282 (322)
T 1e69_A          240 KPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK  282 (322)
T ss_dssp             SCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH
Confidence            678999999999 899999999999999984 465 88899873

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.71  E-value=2.4e-08  Score=92.89  Aligned_cols=42  Identities=14%  Similarity=0.127  Sum_probs=32.7

Q ss_pred             cCCc--EEEeeCCC-CC--CHHHHHHHHHHHHHHH-hCCc-EEEEecCC
Q 012882          156 RGAS--ILCFDEIQ-TV--DVFAIVALSGIVSRLL-STGT-VLVATSNR  197 (454)
Q Consensus       156 ~~p~--lL~LDEp~-~l--D~~~a~~L~~ll~~L~-~~G~-vlV~ThN~  197 (454)
                      .+|+  +|++|||+ .+  |+.....+.+.|..+. +.|+ +|++||+.
T Consensus       120 ~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~  168 (235)
T 2w0m_A          120 LGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA  168 (235)
T ss_dssp             HCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred             hCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence            4799  99999999 45  8888888888888885 4587 88888875

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.71  E-value=1.1e-09  Score=112.77  Aligned_cols=144  Identities=11%  Similarity=0.037  Sum_probs=76.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh-hhcccchhhhhhccccCCCCChHHHH
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN-QVAEKSLRSSISGWITNLPFDSKVME  122 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~~~~~~~~e  122 (454)
                      .-++|+|+||||||||+++|.|..++. .+...+....    .. +..++.+. ..+.+++.+++-..     ......+
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~~p~-~GsI~~~g~~----~t-~~~~v~q~~~~~~ltv~D~~g~~-----~~~~~~~  138 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIGNEE-EGAAKTGVVE----VT-MERHPYKHPNIPNVVFWDLPGIG-----STNFPPD  138 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCTTS-TTSCCCCC---------CCCEEEECSSCTTEEEEECCCGG-----GSSCCHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCCCcc-CceEEECCee----cc-eeEEeccccccCCeeehHhhccc-----chHHHHH
Confidence            378999999999999999999987642 2222211110    00 00122222 11233444433111     1112345


Q ss_pred             HHHHHHhhhhHHh------h--cchHHHHHHHhhhhh---hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHH-----
Q 012882          123 WVAAEEKYKQEVQ------M--KNILPAVADKFLVDQ---HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLL-----  185 (454)
Q Consensus       123 ~ll~~~~l~~~~~------~--~~~l~~va~~l~~~~---rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~-----  185 (454)
                      +++..+++.....      .  ......+++.+....   .....+|++|++|||+ ++|+..+..+.+++..+.     
T Consensus       139 ~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~  218 (413)
T 1tq4_A          139 TYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR  218 (413)
T ss_dssp             HHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            5555555532100      0  011122333332100   0111289999999999 899999999999998884     


Q ss_pred             hCC----c-EEEEecCCC
Q 012882          186 STG----T-VLVATSNRA  198 (454)
Q Consensus       186 ~~G----~-vlV~ThN~~  198 (454)
                      +.|    . ++|+||+..
T Consensus       219 ~~g~~~~~iiliSsh~l~  236 (413)
T 1tq4_A          219 ENGIAEPPIFLLSNKNVC  236 (413)
T ss_dssp             HTTCSSCCEEECCTTCTT
T ss_pred             hcCCCCCcEEEEecCcCC
Confidence            333    4 556666543

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.71  E-value=2.9e-09  Score=100.39  Aligned_cols=29  Identities=14%  Similarity=0.150  Sum_probs=25.1

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEG   69 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~   69 (454)
                      +.++-++|+||||||||||+++|.|..++
T Consensus        14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p   42 (219)
T 1s96_A           14 AQGTLYIVSAPSGAGKSSLIQALLKTQPL   42 (219)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence            45677999999999999999999998863

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.70  E-value=2e-08  Score=111.37  Aligned_cols=43  Identities=21%  Similarity=0.200  Sum_probs=36.4

Q ss_pred             ccCCcEEEeeCCC-CCCHHHHHHH-HHHHHHHHhC-Cc-EEEEecCC
Q 012882          155 QRGASILCFDEIQ-TVDVFAIVAL-SGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       155 ~~~p~lL~LDEp~-~lD~~~a~~L-~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      +.+|+||+||||+ ++|+.+...+ ..++..+.+. |. +|++||+.
T Consensus       684 a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~  730 (800)
T 1wb9_A          684 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF  730 (800)
T ss_dssp             CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred             ccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCH
Confidence            4799999999999 8998777665 7889999874 77 99999985

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=98.66  E-value=2.7e-08  Score=96.58  Aligned_cols=46  Identities=13%  Similarity=0.292  Sum_probs=32.4

Q ss_pred             hhccCCcEEEeeCCC---CCCHHH---HHHHHHHHHHHH-hCCc-EEEEecCCC
Q 012882          153 ADQRGASILCFDEIQ---TVDVFA---IVALSGIVSRLL-STGT-VLVATSNRA  198 (454)
Q Consensus       153 AL~~~p~lL~LDEp~---~lD~~~---a~~L~~ll~~L~-~~G~-vlV~ThN~~  198 (454)
                      +++.+|++|++|||+   ++|...   ...+.+.|..+. +.|+ ||+++|+..
T Consensus       129 ~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~  182 (279)
T 1nlf_A          129 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASK  182 (279)
T ss_dssp             HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred             HhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence            345789999999999   367643   366667777775 4587 888888753

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.65  E-value=6.8e-09  Score=114.56  Aligned_cols=25  Identities=12%  Similarity=0.065  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ++.++|+||||+||||||++++|..
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iagl~  600 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTALIA  600 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHHHhhh
Confidence            6779999999999999999999854

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.65  E-value=8.7e-09  Score=104.13  Aligned_cols=25  Identities=20%  Similarity=0.282  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .-++|.||||||||||++++.|.++
T Consensus       124 g~i~I~GptGSGKTTlL~~l~g~~~  148 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAMLDYLN  148 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccc
Confidence            3488999999999999999999875

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.62  E-value=1.7e-08  Score=99.74  Aligned_cols=28  Identities=21%  Similarity=0.298  Sum_probs=25.2

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ..|.-++|+||||||||||++.|+|.++
T Consensus        98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~  125 (302)
T 3b9q_A           98 RKPAVIMIVGVNGGGKTTSLGKLAHRLK  125 (302)
T ss_dssp             SSCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4567799999999999999999999875

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.62  E-value=4.8e-08  Score=103.56  Aligned_cols=44  Identities=7%  Similarity=-0.022  Sum_probs=39.1

Q ss_pred             hhccCCcEEEeeCCC-CCCHH-----HHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          153 ADQRGASILCFDEIQ-TVDVF-----AIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       153 AL~~~p~lL~LDEp~-~lD~~-----~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      ++..+|++|++| |+ ++|..     .+..+.+++..+.+.|+ +|++||+.
T Consensus       367 ~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~  417 (525)
T 1tf7_A          367 INDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD  417 (525)
T ss_dssp             HHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred             HHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence            445899999999 99 89998     89999999999998888 88889886

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.62  E-value=2.1e-08  Score=93.59  Aligned_cols=48  Identities=15%  Similarity=0.338  Sum_probs=35.2

Q ss_pred             cCCcEEEeeCCCCCC--HHHHHHHHHHHHHHHhCCcE-EEEecCCCccchh
Q 012882          156 RGASILCFDEIQTVD--VFAIVALSGIVSRLLSTGTV-LVATSNRAPWDLN  203 (454)
Q Consensus       156 ~~p~lL~LDEp~~lD--~~~a~~L~~ll~~L~~~G~v-lV~ThN~~P~dLy  203 (454)
                      .++.+|++||+..++  ......|..++..+.+.+.+ +|+|+|..|.++.
T Consensus       103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~  153 (242)
T 3bos_A          103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAG  153 (242)
T ss_dssp             GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTT
T ss_pred             cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHH
Confidence            458999999999443  33477788888888877764 7777777776543

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.60  E-value=1.6e-08  Score=101.18  Aligned_cols=28  Identities=25%  Similarity=0.337  Sum_probs=25.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATEG   69 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~~   69 (454)
                      +++.++|+||||||||||+++|+|.+++
T Consensus       170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~  197 (330)
T 2pt7_A          170 IGKNVIVCGGTGSGKTTYIKSIMEFIPK  197 (330)
T ss_dssp             HTCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence            4567999999999999999999999874

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.58  E-value=1e-07  Score=99.86  Aligned_cols=29  Identities=38%  Similarity=0.658  Sum_probs=25.7

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ...|+|++|+||+|+|||||++++++...
T Consensus        46 ~~~p~gvLL~GppGtGKT~Laraia~~~~   74 (476)
T 2ce7_A           46 ARMPKGILLVGPPGTGKTLLARAVAGEAN   74 (476)
T ss_dssp             CCCCSEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            35789999999999999999999998653

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.58  E-value=6.5e-09  Score=112.24  Aligned_cols=46  Identities=9%  Similarity=0.009  Sum_probs=36.5

Q ss_pred             ccCCcEEEeeCC------C-CCCHHHHHHHHHHHHHHHhC--Cc-EEEEecCCCcc
Q 012882          155 QRGASILCFDEI------Q-TVDVFAIVALSGIVSRLLST--GT-VLVATSNRAPW  200 (454)
Q Consensus       155 ~~~p~lL~LDEp------~-~lD~~~a~~L~~ll~~L~~~--G~-vlV~ThN~~P~  200 (454)
                      ...|+++++|||      + ++|......+.+++..+...  +. ++++|||....
T Consensus       144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a  199 (608)
T 3szr_A          144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA  199 (608)
T ss_dssp             SSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT
T ss_pred             CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc
Confidence            357999999999      7 79999999999999997543  45 77788886544

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.56  E-value=1.9e-07  Score=93.94  Aligned_cols=37  Identities=30%  Similarity=0.386  Sum_probs=29.1

Q ss_pred             hhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           28 KLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        28 ~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .++.+++-   ..+.+.-+.|+||||||||||+..|++..
T Consensus       119 ~LD~lL~g---gi~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          119 SLDKLLGG---GIETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             HHHHHHTS---SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             HHHHHhcC---CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            35555542   34566779999999999999999999976

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=98.55  E-value=1.1e-07  Score=83.16  Aligned_cols=49  Identities=10%  Similarity=0.043  Sum_probs=37.8

Q ss_pred             CCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchhcCC
Q 012882          157 GASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDG  206 (454)
Q Consensus       157 ~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy~~~  206 (454)
                      +..+|+|||+..++......|.+++......++.+|+|+|+++.++ ..+
T Consensus        75 ~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~-~~~  123 (143)
T 3co5_A           75 EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYAAGSD-GIS  123 (143)
T ss_dssp             TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC---C
T ss_pred             CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCCHHHH-HhC
Confidence            3579999999988888888888887776444568888889998887 655

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.53  E-value=5.3e-08  Score=98.39  Aligned_cols=28  Identities=21%  Similarity=0.298  Sum_probs=25.3

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ..|.-++|+||||||||||++.|+|.++
T Consensus       155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~  182 (359)
T 2og2_A          155 RKPAVIMIVGVNGGGKTTSLGKLAHRLK  182 (359)
T ss_dssp             SSSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence            4577899999999999999999999875

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=98.52  E-value=8.5e-08  Score=94.28  Aligned_cols=29  Identities=31%  Similarity=0.564  Sum_probs=26.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ..+++|++|+||+|||||||++++++.+.
T Consensus        46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~   74 (301)
T 3cf0_A           46 MTPSKGVLFYGPPGCGKTLLAKAIANECQ   74 (301)
T ss_dssp             CCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred             CCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence            35789999999999999999999999774

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.51  E-value=3.3e-07  Score=89.10  Aligned_cols=29  Identities=31%  Similarity=0.480  Sum_probs=26.4

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ...|+|++|+||||||||||++++++.+.
T Consensus        41 l~~~~GvlL~Gp~GtGKTtLakala~~~~   69 (274)
T 2x8a_A           41 LVTPAGVLLAGPPGCGKTLLAKAVANESG   69 (274)
T ss_dssp             CCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence            45789999999999999999999999875

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.49  E-value=4.1e-07  Score=84.02  Aligned_cols=35  Identities=34%  Similarity=0.243  Sum_probs=27.2

Q ss_pred             hhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHh
Q 012882           28 KLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        28 ~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      .++.+++.   ..+.+.-+.|+|+||+|||||+..|++
T Consensus         8 ~LD~~l~G---gi~~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A            8 SLDSLLGG---GFAPGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             HHHHHTTS---SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHhhcC---CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            35555531   234667899999999999999999998

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.46  E-value=9.3e-07  Score=82.88  Aligned_cols=37  Identities=19%  Similarity=0.277  Sum_probs=29.0

Q ss_pred             hhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           27 RKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        27 ~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      ..++.+++.   ..+.+.-+.|+||||+|||||+..|++.
T Consensus        11 ~~LD~~l~g---gi~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           11 KELDKLLQG---GIETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             HHHHHHTTT---SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             hHHHHhhcC---CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            346666642   2446778999999999999999999984

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=98.42  E-value=8.3e-07  Score=84.30  Aligned_cols=28  Identities=36%  Similarity=0.567  Sum_probs=25.2

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ..|+|++|+||+|+|||||+++++..+.
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~~   64 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEAQ   64 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            5789999999999999999999988653

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=98.41  E-value=3.4e-07  Score=101.28  Aligned_cols=30  Identities=33%  Similarity=0.646  Sum_probs=27.2

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ...+|+|+.|+||+|||||||++++++.+.
T Consensus       234 g~~~p~GILL~GPPGTGKT~LAraiA~elg  263 (806)
T 3cf2_A          234 GVKPPRGILLYGPPGTGKTLIARAVANETG  263 (806)
T ss_dssp             CCCCCCEEEEECCTTSCHHHHHHHHHTTTT
T ss_pred             CCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            456899999999999999999999999874

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=98.40  E-value=2.3e-07  Score=89.72  Aligned_cols=28  Identities=43%  Similarity=0.740  Sum_probs=25.5

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ..++|++|+||+|+|||||+++++..+.
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~~~   76 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATETN   76 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            5689999999999999999999998774

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=98.40  E-value=4.1e-07  Score=79.53  Aligned_cols=52  Identities=10%  Similarity=0.015  Sum_probs=36.9

Q ss_pred             CCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchhcCCchh
Q 012882          157 GASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQR  209 (454)
Q Consensus       157 ~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy~~~l~r  209 (454)
                      +..+|++||+..++...+..|.+++... .....+|+|+|.+++++...+..+
T Consensus        76 ~~g~l~ldei~~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~~~~~~~~~~~  127 (145)
T 3n70_A           76 QGGTLVLSHPEHLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLVELAASNHII  127 (145)
T ss_dssp             TTSCEEEECGGGSCHHHHHHHHHHHHSS-SCSSCEEEEESSCHHHHHHHSCCC
T ss_pred             CCcEEEEcChHHCCHHHHHHHHHHHhhc-CCCEEEEEECCcCHHHHHHcCCCC
Confidence            3579999999988887777777766221 123477888899998876655433

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=98.39  E-value=1.1e-06  Score=86.09  Aligned_cols=30  Identities=20%  Similarity=0.389  Sum_probs=26.4

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ....|+|++|+||+|+|||+|+++++..+.
T Consensus        32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~   61 (293)
T 3t15_A           32 NIKVPLILGIWGGKGQGKSFQCELVFRKMG   61 (293)
T ss_dssp             TCCCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            345789999999999999999999998763

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=98.37  E-value=6.7e-07  Score=81.65  Aligned_cols=41  Identities=17%  Similarity=0.154  Sum_probs=29.6

Q ss_pred             cCCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 012882          156 RGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       156 ~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      .++.+|++||+..++......|.+++.... .+.++|+|+|.
T Consensus       101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~  141 (226)
T 2chg_A          101 APFKIIFLDEADALTADAQAALRRTMEMYS-KSCRFILSCNY  141 (226)
T ss_dssp             CSCEEEEEETGGGSCHHHHHHHHHHHHHTT-TTEEEEEEESC
T ss_pred             cCceEEEEeChhhcCHHHHHHHHHHHHhcC-CCCeEEEEeCC
Confidence            468899999999888777777777776532 34566666665

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.37  E-value=8.6e-08  Score=97.38  Aligned_cols=28  Identities=18%  Similarity=0.208  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .++.-++|+||||||||||+++|.+.++
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~  161 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            3455688999999999999999999875

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=98.35  E-value=6.4e-07  Score=88.31  Aligned_cols=61  Identities=16%  Similarity=0.335  Sum_probs=41.1

Q ss_pred             cCCcEEEeeCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCc
Q 012882          156 RGASILCFDEIQTVD-VFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSE  231 (454)
Q Consensus       156 ~~p~lL~LDEp~~lD-~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~  231 (454)
                      .++.+|++||++.+. ......|.+++..... ++++|+|+|..+ .+             ...|..+|.++.+..+
T Consensus       104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~-~~~iI~~~n~~~-~l-------------~~~l~sR~~~i~~~~~  165 (324)
T 3u61_B          104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSS-NCSIIITANNID-GI-------------IKPLQSRCRVITFGQP  165 (324)
T ss_dssp             SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGG-GCEEEEEESSGG-GS-------------CTTHHHHSEEEECCCC
T ss_pred             CCCeEEEEECCcccCcHHHHHHHHHHHHhCCC-CcEEEEEeCCcc-cc-------------CHHHHhhCcEEEeCCC
Confidence            368999999999776 6677777777776543 456666777643 21             1235667777777554

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.33  E-value=1.3e-06  Score=83.12  Aligned_cols=28  Identities=39%  Similarity=0.580  Sum_probs=25.6

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ..|+|++|+||||||||||++++++.+.
T Consensus        47 ~~~~g~ll~G~~G~GKTtl~~~i~~~~~   74 (254)
T 1ixz_A           47 RIPKGVLLVGPPGVGKTHLARAVAGEAR   74 (254)
T ss_dssp             CCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            4678999999999999999999999874

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.33  E-value=1.7e-07  Score=93.04  Aligned_cols=30  Identities=20%  Similarity=0.254  Sum_probs=26.0

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEG   69 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~   69 (454)
                      ...+.-++|.||||||||||+++|+|.+++
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~  116 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR  116 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence            345677999999999999999999998753

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.32  E-value=5.5e-07  Score=89.75  Aligned_cols=58  Identities=21%  Similarity=0.279  Sum_probs=38.0

Q ss_pred             ceeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882            2 DVSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .|.++|+|.+++...|.-    .-.+.+...+...    ..|. ++|+||+|+||||+++++++.+.
T Consensus        14 ~~~~k~rp~~~~~~~g~~----~~~~~L~~~i~~g----~~~~-~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           14 PWVEKYRPETLDEVYGQN----EVITTVRKFVDEG----KLPH-LLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             CHHHHTCCSSGGGCCSCH----HHHHHHHHHHHTT----CCCC-EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             chHHHhCCCcHHHhcCcH----HHHHHHHHHHhcC----CCce-EEEECCCCCCHHHHHHHHHHHHc
Confidence            377889998888765410    0001233333321    1233 89999999999999999998764

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=98.31  E-value=1.9e-06  Score=85.64  Aligned_cols=27  Identities=26%  Similarity=0.497  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .+++|++|+||+|||||+|+++++..+
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHHc
Confidence            467999999999999999999999876

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.31  E-value=3.8e-09  Score=97.80  Aligned_cols=45  Identities=13%  Similarity=0.014  Sum_probs=32.1

Q ss_pred             hhhccCCcEEEeeCCC-C-------CCHHHHHHHHHHHHHH-HhCCc-EEEEecC
Q 012882          152 HADQRGASILCFDEIQ-T-------VDVFAIVALSGIVSRL-LSTGT-VLVATSN  196 (454)
Q Consensus       152 rAL~~~p~lL~LDEp~-~-------lD~~~a~~L~~ll~~L-~~~G~-vlV~ThN  196 (454)
                      ++++.+|.+|++|||+ .       +|+.....+.+.+.+. .++|. +++++|+
T Consensus       106 ~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~  160 (211)
T 3asz_A          106 PVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQ  160 (211)
T ss_dssp             SEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             cEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            4566777888888887 6       7888888888888775 45565 5555664

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.28  E-value=3.3e-07  Score=92.53  Aligned_cols=27  Identities=22%  Similarity=0.369  Sum_probs=24.8

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGATEG   69 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l~~   69 (454)
                      .+-++|+|+||||||||+++|+|.+++
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~  196 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNT  196 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            677999999999999999999998864

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=98.28  E-value=1.4e-07  Score=104.41  Aligned_cols=30  Identities=30%  Similarity=0.551  Sum_probs=27.0

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ...+|+|++|+||+|||||+|.+++++.+.
T Consensus       507 g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~  536 (806)
T 3cf2_A          507 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ  536 (806)
T ss_dssp             CCCCCSCCEEESSTTSSHHHHHHHHHHTTT
T ss_pred             CCCCCceEEEecCCCCCchHHHHHHHHHhC
Confidence            346789999999999999999999999874

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.28  E-value=1.2e-07  Score=90.12  Aligned_cols=35  Identities=9%  Similarity=-0.113  Sum_probs=28.9

Q ss_pred             hhh-ccCCcEEEee----CCC-CCCHHHHHHHHHHHHHHHh
Q 012882          152 HAD-QRGASILCFD----EIQ-TVDVFAIVALSGIVSRLLS  186 (454)
Q Consensus       152 rAL-~~~p~lL~LD----Ep~-~lD~~~a~~L~~ll~~L~~  186 (454)
                      +++ +.+|+++++|    ||+ ++|......+.+.+..+.+
T Consensus       158 ~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~  198 (246)
T 2bbw_A          158 YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD  198 (246)
T ss_dssp             EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred             cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence            345 7899999999    999 8999888888888877644

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.28  E-value=2.9e-06  Score=89.28  Aligned_cols=29  Identities=38%  Similarity=0.564  Sum_probs=26.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ...|+|++|+||||||||||++++++.+.
T Consensus        61 ~~ip~GvLL~GppGtGKTtLaraIa~~~~   89 (499)
T 2dhr_A           61 ARIPKGVLLVGPPGVGKTHLARAVAGEAR   89 (499)
T ss_dssp             CCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            35689999999999999999999999774

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.27  E-value=5.9e-07  Score=88.75  Aligned_cols=28  Identities=18%  Similarity=0.167  Sum_probs=25.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATEG   69 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~~   69 (454)
                      .|.-+.|+||||||||||+++|++.+++
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~  128 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN  128 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            4677999999999999999999998864

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=98.26  E-value=1.5e-06  Score=86.15  Aligned_cols=28  Identities=29%  Similarity=0.544  Sum_probs=25.2

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .+++|++|+||+|+|||+|+++++..+.
T Consensus        49 ~~~~~vLl~GppGtGKT~la~aia~~~~   76 (322)
T 3eie_A           49 KPTSGILLYGPPGTGKSYLAKAVATEAN   76 (322)
T ss_dssp             CCCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence            4679999999999999999999988753

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=98.25  E-value=2.4e-07  Score=82.57  Aligned_cols=26  Identities=23%  Similarity=0.313  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .+.+++|+||+|+|||||++.++..+
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999998754

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.23  E-value=6.7e-07  Score=88.68  Aligned_cols=59  Identities=15%  Similarity=0.188  Sum_probs=37.5

Q ss_pred             CCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCC
Q 012882          157 GASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGS  230 (454)
Q Consensus       157 ~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~  230 (454)
                      ++.||++||+..++......|.+++.+......+++ ++|.+ ..+             ...|..+|.++.+..
T Consensus       133 ~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il-~~~~~-~~l-------------~~~l~sR~~~i~~~~  191 (353)
T 1sxj_D          133 PYKIIILDEADSMTADAQSALRRTMETYSGVTRFCL-ICNYV-TRI-------------IDPLASQCSKFRFKA  191 (353)
T ss_dssp             SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEE-EESCG-GGS-------------CHHHHHHSEEEECCC
T ss_pred             CceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEE-EeCch-hhC-------------cchhhccCceEEeCC
Confidence            567999999998888877778777776543323444 44532 221             234566777775544

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.20  E-value=2.9e-06  Score=81.97  Aligned_cols=28  Identities=39%  Similarity=0.580  Sum_probs=25.6

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ..++|++|+||||||||||++++++.+.
T Consensus        71 ~~~~gvll~Gp~GtGKTtl~~~i~~~~~   98 (278)
T 1iy2_A           71 RIPKGVLLVGPPGVGKTHLARAVAGEAR   98 (278)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence            4678999999999999999999999874

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=98.19  E-value=1.9e-06  Score=88.21  Aligned_cols=39  Identities=23%  Similarity=0.350  Sum_probs=28.1

Q ss_pred             hhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHH--hCCC
Q 012882           27 RKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFY--GATE   68 (454)
Q Consensus        27 ~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~--g~l~   68 (454)
                      ..++.+++.   ..+++.-+.|+||+|||||||+..|+  +..+
T Consensus       165 ~~LD~lLgG---GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p  205 (400)
T 3lda_A          165 KNLDTLLGG---GVETGSITELFGEFRTGKSQLCHTLAVTCQIP  205 (400)
T ss_dssp             HHHHHHTTT---SEETTSEEEEEESTTSSHHHHHHHHHHHTTSC
T ss_pred             hhHHHHhcC---CcCCCcEEEEEcCCCCChHHHHHHHHHHhccC
Confidence            346666542   34567779999999999999999654  4444

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.18  E-value=1.2e-06  Score=86.19  Aligned_cols=25  Identities=24%  Similarity=0.380  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC-CC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA-TE   68 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~-l~   68 (454)
                      --++|+|+||+|||||+++|+|. ..
T Consensus        19 ~~I~lvG~nG~GKSTLl~~L~g~~~~   44 (301)
T 2qnr_A           19 FTLMVVGESGLGKSTLINSLFLTDLY   44 (301)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHC----
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCcc
Confidence            44799999999999999999986 43

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=98.15  E-value=5.4e-06  Score=78.91  Aligned_cols=28  Identities=36%  Similarity=0.678  Sum_probs=25.2

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ..|+|++|+||+|+|||||++++++.+.
T Consensus        43 ~~~~~vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           43 KIPKGVLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence            4688999999999999999999998764

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.15  E-value=2.8e-07  Score=84.75  Aligned_cols=25  Identities=28%  Similarity=0.428  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .-++|+||||||||||+++++|.++
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhcc
Confidence            3478999999999999999999764

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=98.14  E-value=2.2e-06  Score=86.20  Aligned_cols=28  Identities=29%  Similarity=0.544  Sum_probs=25.2

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .+++|++|+||+|||||||+++++..+.
T Consensus        82 ~~~~~iLL~GppGtGKT~la~ala~~~~  109 (355)
T 2qp9_X           82 KPTSGILLYGPPGTGKSYLAKAVATEAN  109 (355)
T ss_dssp             CCCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence            4678999999999999999999998764

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=98.14  E-value=1.8e-06  Score=84.36  Aligned_cols=57  Identities=19%  Similarity=0.189  Sum_probs=36.8

Q ss_pred             ceeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882            2 DVSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .|.++|+|..++.-.|.    -...+.+..++..     ..+..++|+||+|+||||+++.++..+
T Consensus        14 ~~~~k~~p~~~~~~~g~----~~~~~~l~~~l~~-----~~~~~~ll~G~~G~GKT~la~~l~~~l   70 (327)
T 1iqp_A           14 PWVEKYRPQRLDDIVGQ----EHIVKRLKHYVKT-----GSMPHLLFAGPPGVGKTTAALALAREL   70 (327)
T ss_dssp             CHHHHTCCCSTTTCCSC----HHHHHHHHHHHHH-----TCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             chhhccCCCCHHHhhCC----HHHHHHHHHHHHc-----CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            47788888887765441    0001223333332     122349999999999999999998765

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=98.14  E-value=7.6e-06  Score=79.45  Aligned_cols=27  Identities=37%  Similarity=0.603  Sum_probs=24.8

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ++++++|+||+|+|||||++++++.+.
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~   79 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECS   79 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence            579999999999999999999998764

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.14  E-value=5.6e-06  Score=82.92  Aligned_cols=42  Identities=10%  Similarity=-0.005  Sum_probs=30.0

Q ss_pred             cCCcEEEeeCCCCCCHHHHHHHHHHHHHHHh---CCcEEEEecCC
Q 012882          156 RGASILCFDEIQTVDVFAIVALSGIVSRLLS---TGTVLVATSNR  197 (454)
Q Consensus       156 ~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~---~G~vlV~ThN~  197 (454)
                      .+|.+|+|||++.+|......|.+++..+..   .+..+|+++|.
T Consensus       124 ~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~  168 (389)
T 1fnn_A          124 DLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHN  168 (389)
T ss_dssp             TCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESS
T ss_pred             CCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECC
Confidence            4588999999997788777777777766655   46644444443

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=98.14  E-value=1e-06  Score=81.23  Aligned_cols=26  Identities=19%  Similarity=0.302  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .+..++|+||+|+|||||++.++..+
T Consensus        44 ~~~~~ll~G~~G~GKT~l~~~~~~~~   69 (250)
T 1njg_A           44 IHHAYLFSGTRGVGKTSIARLLAKGL   69 (250)
T ss_dssp             CCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999998754

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=98.13  E-value=2.2e-06  Score=75.67  Aligned_cols=46  Identities=22%  Similarity=0.158  Sum_probs=40.5

Q ss_pred             hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          152 HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       152 rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      ++|+.+|++|+||||+ ++|+..+..+.+++..+.+.|. +|++||+.
T Consensus        76 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~  123 (148)
T 1f2t_B           76 LYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE  123 (148)
T ss_dssp             HHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG
T ss_pred             HHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH
Confidence            3455899999999999 8999999999999999877676 99999984

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=98.13  E-value=6.3e-06  Score=78.83  Aligned_cols=48  Identities=17%  Similarity=0.148  Sum_probs=34.5

Q ss_pred             CCcEEEeeCCCCCCHHHHHHHHHHHHHHH----------hCCcEEEEecCCCccchhc
Q 012882          157 GASILCFDEIQTVDVFAIVALSGIVSRLL----------STGTVLVATSNRAPWDLNQ  204 (454)
Q Consensus       157 ~p~lL~LDEp~~lD~~~a~~L~~ll~~L~----------~~G~vlV~ThN~~P~dLy~  204 (454)
                      +..+|+|||+..+.......|.+++..-.          ..++.+|+|+|.++.++..
T Consensus       100 ~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~  157 (265)
T 2bjv_A          100 DGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVN  157 (265)
T ss_dssp             TTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHH
T ss_pred             CCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHH
Confidence            46799999999887777777766665421          1245788888988877654

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=98.10  E-value=3.1e-06  Score=87.91  Aligned_cols=60  Identities=23%  Similarity=0.392  Sum_probs=37.0

Q ss_pred             eeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882            3 VSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      |..+|+|.+++.-.|.- ..+.....+...+..     ....+++|+||+|+|||||+++|+..+.
T Consensus        16 la~r~rP~~l~~ivGq~-~~~~~~~~L~~~i~~-----~~~~~vLL~GppGtGKTtlAr~ia~~~~   75 (447)
T 3pvs_A           16 LAARMRPENLAQYIGQQ-HLLAAGKPLPRAIEA-----GHLHSMILWGPPGTGKTTLAEVIARYAN   75 (447)
T ss_dssp             HHHHTCCCSTTTCCSCH-HHHSTTSHHHHHHHH-----TCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             hHHHhCCCCHHHhCCcH-HHHhchHHHHHHHHc-----CCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence            44567777776654411 011111223333322     1237899999999999999999998774

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=98.09  E-value=3.4e-06  Score=87.53  Aligned_cols=27  Identities=26%  Similarity=0.497  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .+++|++|+||+|+|||||+++++..+
T Consensus       165 ~~~~~vLL~GppGtGKT~lA~aia~~~  191 (444)
T 2zan_A          165 TPWRGILLFGPPGTGKSYLAKAVATEA  191 (444)
T ss_dssp             CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            467999999999999999999999876

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=98.08  E-value=6.6e-06  Score=86.42  Aligned_cols=29  Identities=34%  Similarity=0.662  Sum_probs=25.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ..+|+|++|+||+|+|||+|+++++....
T Consensus       235 ~~~~~~vLL~GppGtGKT~lAraia~~~~  263 (489)
T 3hu3_A          235 VKPPRGILLYGPPGTGKTLIARAVANETG  263 (489)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHHHCS
T ss_pred             CCCCCcEEEECcCCCCHHHHHHHHHHHhC
Confidence            35789999999999999999999988763

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.08  E-value=5.8e-06  Score=87.35  Aligned_cols=26  Identities=27%  Similarity=0.350  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .+++++|+||+|+||||++++++..+
T Consensus        76 ~~~~lLL~GppGtGKTtla~~la~~l  101 (516)
T 1sxj_A           76 VFRAAMLYGPPGIGKTTAAHLVAQEL  101 (516)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            56899999999999999999999876

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=98.07  E-value=2.2e-06  Score=76.20  Aligned_cols=26  Identities=23%  Similarity=0.324  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .+++++|+||+|+|||||++.++..+
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            56889999999999999999998754

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=98.06  E-value=9.8e-06  Score=81.44  Aligned_cols=30  Identities=17%  Similarity=0.337  Sum_probs=26.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEG   69 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~   69 (454)
                      ...++-++|+||||||||||+++|+|...+
T Consensus        68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~   97 (347)
T 2obl_A           68 CGIGQRIGIFAGSGVGKSTLLGMICNGASA   97 (347)
T ss_dssp             EETTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            346777999999999999999999999864

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=98.05  E-value=3.8e-06  Score=83.86  Aligned_cols=27  Identities=30%  Similarity=0.518  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ..+..++|+||+|+|||||++.++..+
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            457889999999999999999998765

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=98.04  E-value=4.5e-06  Score=83.98  Aligned_cols=28  Identities=32%  Similarity=0.640  Sum_probs=25.2

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ..+++++|+||+|+|||||+++++..+.
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~~  142 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQSG  142 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence            4689999999999999999999998763

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=98.02  E-value=4.9e-06  Score=82.36  Aligned_cols=28  Identities=21%  Similarity=0.292  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .++.+++|+||+|+|||+|++.++....
T Consensus        53 ~~~~~vll~G~~GtGKT~la~~ia~~~~   80 (338)
T 3pfi_A           53 ECLDHILFSGPAGLGKTTLANIISYEMS   80 (338)
T ss_dssp             SCCCCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence            3567899999999999999999988764

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.00  E-value=1.3e-05  Score=82.55  Aligned_cols=25  Identities=24%  Similarity=0.396  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      --++|+|+||+|||||+++|+|...
T Consensus        32 f~I~lvG~sGaGKSTLln~L~g~~~   56 (418)
T 2qag_C           32 FTLMVVGESGLGKSTLINSLFLTDL   56 (418)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTCCC
T ss_pred             EEEEEECCCCCcHHHHHHHHhCCCC
Confidence            3469999999999999999999764

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.98  E-value=6.2e-06  Score=85.44  Aligned_cols=31  Identities=23%  Similarity=0.352  Sum_probs=26.9

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATEG   69 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~   69 (454)
                      ....++-++|+||||||||||+++|+|..++
T Consensus       153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~  183 (438)
T 2dpy_A          153 TVGRGQRMGLFAGSGVGKSVLLGMMARYTRA  183 (438)
T ss_dssp             CCBTTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence            3456777999999999999999999999864

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=97.98  E-value=1.2e-05  Score=81.60  Aligned_cols=27  Identities=37%  Similarity=0.678  Sum_probs=24.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ++++++|+||+|+|||+|+++++..+.
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~~~~  173 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAAESN  173 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhhc
Confidence            578999999999999999999988663

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=97.97  E-value=1.3e-06  Score=85.13  Aligned_cols=54  Identities=24%  Similarity=0.326  Sum_probs=36.3

Q ss_pred             ceeecccCCccccCcccccccccchh---hhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882            2 DVSVRKNPENVEPGVGRWVSYLNRER---KLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .|.++|+|..++.-.|       ++.   .+.+++..    ...| .++|+||+|+||||+++.++..+
T Consensus         6 ~~~~k~~p~~~~~~~g-------~~~~~~~l~~~l~~----~~~~-~~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A            6 IWVEKYRPRTLDEVVG-------QDEVIQRLKGYVER----KNIP-HLLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             CTTTTTSCSSGGGSCS-------CHHHHHHHHTTTTT----TCCC-CEEEESSSSSSHHHHHHHHHHHH
T ss_pred             cHHHhcCCCCHHHHhC-------CHHHHHHHHHHHhC----CCCC-eEEEECcCCcCHHHHHHHHHHHh
Confidence            3788899987776443       222   23333322    1222 39999999999999999998765

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.97  E-value=1.2e-05  Score=80.08  Aligned_cols=28  Identities=25%  Similarity=0.271  Sum_probs=25.3

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      +.|.-+.|+||||||||||++.|++.+.
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~  154 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLK  154 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4577899999999999999999999875

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.97  E-value=3.3e-06  Score=82.40  Aligned_cols=60  Identities=18%  Similarity=0.244  Sum_probs=38.3

Q ss_pred             CCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCc
Q 012882          157 GASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSE  231 (454)
Q Consensus       157 ~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~  231 (454)
                      ++.++++||...+.......|.+++.... .++++|.++|. +..+             ...|..+|.++.+...
T Consensus       107 ~~~viiiDe~~~l~~~~~~~L~~~le~~~-~~~~~il~~~~-~~~l-------------~~~l~sr~~~i~~~~~  166 (323)
T 1sxj_B          107 KHKIVILDEADSMTAGAQQALRRTMELYS-NSTRFAFACNQ-SNKI-------------IEPLQSQCAILRYSKL  166 (323)
T ss_dssp             CCEEEEEESGGGSCHHHHHTTHHHHHHTT-TTEEEEEEESC-GGGS-------------CHHHHTTSEEEECCCC
T ss_pred             CceEEEEECcccCCHHHHHHHHHHHhccC-CCceEEEEeCC-hhhc-------------hhHHHhhceEEeecCC
Confidence            48999999999777777666766666532 34555555554 2221             2346677887777654

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.96  E-value=3.8e-06  Score=83.76  Aligned_cols=28  Identities=25%  Similarity=0.648  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ..+..++|+||+|+|||||++.+++.+.
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~   70 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH   70 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            3567899999999999999999998663

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.92  E-value=1.6e-05  Score=77.48  Aligned_cols=44  Identities=23%  Similarity=0.175  Sum_probs=32.1

Q ss_pred             CCcEEEeeCCCCCCHHHHHHHHHHHHHHHh----------CCcEEEEecCCCcc
Q 012882          157 GASILCFDEIQTVDVFAIVALSGIVSRLLS----------TGTVLVATSNRAPW  200 (454)
Q Consensus       157 ~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~----------~G~vlV~ThN~~P~  200 (454)
                      ...+|+|||+..++......|.+++..-.-          .++++|+|+|..+.
T Consensus       119 ~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~  172 (311)
T 4fcw_A          119 PYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSP  172 (311)
T ss_dssp             SSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHH
T ss_pred             CCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHH
Confidence            357999999998888877777777765320          14478899998544

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=97.92  E-value=2.2e-05  Score=77.22  Aligned_cols=50  Identities=22%  Similarity=0.238  Sum_probs=34.0

Q ss_pred             CCcEEEeeCCCCCCHHHHHHHHHHHHHHH----------hCCcEEEEecCCCccchhcCC
Q 012882          157 GASILCFDEIQTVDVFAIVALSGIVSRLL----------STGTVLVATSNRAPWDLNQDG  206 (454)
Q Consensus       157 ~p~lL~LDEp~~lD~~~a~~L~~ll~~L~----------~~G~vlV~ThN~~P~dLy~~~  206 (454)
                      +..+|+|||+..+.......|.+++....          ..++.+|+|+|.++.++...|
T Consensus        96 ~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g  155 (304)
T 1ojl_A           96 DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAG  155 (304)
T ss_dssp             TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHT
T ss_pred             CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhC
Confidence            35799999999887776666666665431          123578888888877665443

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.89  E-value=7.4e-06  Score=78.73  Aligned_cols=27  Identities=26%  Similarity=0.215  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .++.+++|+||+|+|||+|+++++...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~~   88 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEES   88 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence            467899999999999999999998864

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.89  E-value=2.8e-05  Score=72.70  Aligned_cols=42  Identities=12%  Similarity=0.072  Sum_probs=27.7

Q ss_pred             cCCcEEEeeCCC-CC--CHHH-HHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          156 RGASILCFDEIQ-TV--DVFA-IVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       156 ~~p~lL~LDEp~-~l--D~~~-a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      .+|+++++|+++ ..  |... ...+..+.+.+.+.|+ |++++|..
T Consensus       127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~  173 (247)
T 2dr3_A          127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVS  173 (247)
T ss_dssp             HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC
T ss_pred             hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence            369999999999 33  5432 3445555555567788 66666654

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.88  E-value=6e-06  Score=87.83  Aligned_cols=27  Identities=30%  Similarity=0.220  Sum_probs=24.7

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .+..++|+||||||||||++++++.+.
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~  133 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLG  133 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            577899999999999999999999875

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.86  E-value=1.2e-05  Score=78.38  Aligned_cols=27  Identities=26%  Similarity=0.317  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ..+.+++|+||+|+|||+|+++++..+
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999887755

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=97.84  E-value=1.3e-05  Score=80.05  Aligned_cols=55  Identities=18%  Similarity=0.261  Sum_probs=36.9

Q ss_pred             eeecccCCccccCcccccccccch---hhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882            3 VSVRKNPENVEPGVGRWVSYLNRE---RKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      |..+|+|...+.-.|       ++   +.+...+..    ...+..++|+||.|+||||+++.++..+.
T Consensus         6 l~~k~rp~~~~~~vg-------~~~~~~~L~~~l~~----~~~~~~~ll~G~~G~GKT~la~~la~~l~   63 (373)
T 1jr3_A            6 LARKWRPQTFADVVG-------QEHVLTALANGLSL----GRIHHAYLFSGTRGVGKTSIARLLAKGLN   63 (373)
T ss_dssp             HHHHTCCCSTTTSCS-------CHHHHHHHHHHHHH----TCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred             HHHhhCCCchhhccC-------cHHHHHHHHHHHHh----CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            567888887765433       22   223333322    12456889999999999999999987553

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.82  E-value=3.8e-05  Score=77.13  Aligned_cols=38  Identities=26%  Similarity=0.322  Sum_probs=28.0

Q ss_pred             hhhhhhcc-CCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           27 RKLDSLVG-RCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        27 ~~~~~~~~-~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ..++.+++ .   ..+.+.-+.|+|++|+|||||+..++...
T Consensus        47 ~~LD~~Lg~G---Gl~~G~iv~I~G~pGsGKTtLal~la~~~   85 (349)
T 2zr9_A           47 ISLDVALGIG---GLPRGRVIEIYGPESSGKTTVALHAVANA   85 (349)
T ss_dssp             HHHHHHTSSS---SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHhccC---CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            44666665 2   23456779999999999999988887543

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=97.76  E-value=1.5e-05  Score=78.14  Aligned_cols=26  Identities=31%  Similarity=0.416  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .+.+++|+||+|+|||||++.++..+
T Consensus        37 ~~~~vll~G~~GtGKT~la~~i~~~~   62 (324)
T 1hqc_A           37 PLEHLLLFGPPGLGKTTLAHVIAHEL   62 (324)
T ss_dssp             CCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999998755

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.72  E-value=1.6e-05  Score=70.78  Aligned_cols=28  Identities=29%  Similarity=0.421  Sum_probs=25.1

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      +++.-++|+||||||||||+++|+|.++
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l~   58 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence            4567799999999999999999999883

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.69  E-value=1.7e-05  Score=80.09  Aligned_cols=28  Identities=29%  Similarity=0.354  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATEG   69 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~~   69 (454)
                      +++-++|.||||||||||+++|.+.+++
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~  201 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEIPF  201 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            5677999999999999999999999874

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.62  E-value=2.7e-05  Score=71.00  Aligned_cols=27  Identities=22%  Similarity=0.263  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .++-++|+||||||||||+++|++..+
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            456799999999999999999999764

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=97.60  E-value=0.0002  Score=71.03  Aligned_cols=27  Identities=19%  Similarity=0.134  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ..|.++||+||+|+|||++++.++..+
T Consensus        43 ~~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           43 SQNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999999998765

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.58  E-value=4e-05  Score=76.64  Aligned_cols=27  Identities=19%  Similarity=0.338  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ..++.++|+||+|+|||||++.++..+
T Consensus        43 ~~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           43 EVKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            356799999999999999999998765

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=97.51  E-value=9.7e-05  Score=77.00  Aligned_cols=26  Identities=23%  Similarity=0.300  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .+.+++|+||+|+|||++++.|+..+
T Consensus       200 ~~~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          200 TKNNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            45789999999999999999998764

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.51  E-value=0.00013  Score=80.48  Aligned_cols=46  Identities=20%  Similarity=0.179  Sum_probs=32.9

Q ss_pred             cCCcEEEeeCCCCCCHHHHHHHHHHHHHHH----------hCCcEEEEecCCCccc
Q 012882          156 RGASILCFDEIQTVDVFAIVALSGIVSRLL----------STGTVLVATSNRAPWD  201 (454)
Q Consensus       156 ~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~----------~~G~vlV~ThN~~P~d  201 (454)
                      ..+.+|+|||+.-+.......|.++|..-.          ..++++|+|+|.++.+
T Consensus       578 ~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~  633 (758)
T 3pxi_A          578 KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASE  633 (758)
T ss_dssp             CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTC
T ss_pred             CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhh
Confidence            356899999999777777777777776511          0235889999976654

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.49  E-value=0.00025  Score=70.57  Aligned_cols=27  Identities=26%  Similarity=0.321  Sum_probs=24.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ++++++|+||+|+|||+|++.++..+.
T Consensus        69 ~~~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           69 AGRAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            468999999999999999999998664

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.48  E-value=4.3e-05  Score=71.33  Aligned_cols=28  Identities=21%  Similarity=0.256  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      +.++-++|+||||||||||+++|.|..|
T Consensus        21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~p   48 (218)
T 1z6g_A           21 NNIYPLVICGPSGVGKGTLIKKLLNEFP   48 (218)
T ss_dssp             -CCCCEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4566799999999999999999999774

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=97.45  E-value=0.0001  Score=72.73  Aligned_cols=26  Identities=19%  Similarity=0.240  Sum_probs=23.8

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      +.+++|+||+|+|||+|++.++..+.
T Consensus        46 ~~~vll~G~pGtGKT~la~~la~~~~   71 (331)
T 2r44_A           46 GGHILLEGVPGLAKTLSVNTLAKTMD   71 (331)
T ss_dssp             TCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            46899999999999999999998775

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.44  E-value=4.9e-05  Score=69.75  Aligned_cols=27  Identities=26%  Similarity=0.581  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      +++-++|+||||||||||+++|.+..+
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            356699999999999999999998653

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.42  E-value=0.00057  Score=66.87  Aligned_cols=27  Identities=26%  Similarity=0.174  Sum_probs=24.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .++-+.++|+||+||||++..+++.+.
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~  123 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYK  123 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            577899999999999999999999875

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=97.42  E-value=0.00026  Score=70.32  Aligned_cols=27  Identities=15%  Similarity=0.110  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .|..++|+||.|+|||++.+.++..+.
T Consensus        23 ~~~a~L~~G~~G~GKt~~a~~la~~l~   49 (334)
T 1a5t_A           23 GHHALLIQALPGMGDDALIYALSRYLL   49 (334)
T ss_dssp             CCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             cceeEEEECCCCchHHHHHHHHHHHHh
Confidence            568899999999999999999987653

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.42  E-value=7.7e-05  Score=67.22  Aligned_cols=27  Identities=22%  Similarity=0.336  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .++-++|+||||||||||+++|.+..+
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            457799999999999999999998765

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=97.42  E-value=0.00011  Score=77.15  Aligned_cols=27  Identities=19%  Similarity=0.315  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .+..+.|+||+|+|||+|+++++..+.
T Consensus        40 ~~~~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           40 SGESVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             HTCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             cCCeeEeecCchHHHHHHHHHHHHHHh
Confidence            357899999999999999999998764

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.41  E-value=8.4e-05  Score=66.96  Aligned_cols=26  Identities=27%  Similarity=0.355  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      ..++-++|+||||||||||+++|++.
T Consensus         7 ~~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            7 LGGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence            45678999999999999999999997

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.36  E-value=9.6e-05  Score=82.86  Aligned_cols=46  Identities=20%  Similarity=0.226  Sum_probs=41.5

Q ss_pred             hhhccCCc--EEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          152 HADQRGAS--ILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       152 rAL~~~p~--lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      ++|+.+|+  ||+||||+ +||+.+...|.++|..|.+.|. ||++|||.
T Consensus       477 raL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~  526 (916)
T 3pih_A          477 TQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDE  526 (916)
T ss_dssp             HHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCH
T ss_pred             HHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            57777776  99999999 8999999999999999988887 99999984

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.36  E-value=0.00075  Score=67.86  Aligned_cols=38  Identities=24%  Similarity=0.276  Sum_probs=29.9

Q ss_pred             hhhhhhcc-CCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           27 RKLDSLVG-RCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        27 ~~~~~~~~-~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ..++.+++ .   ..+++.-+.|+||+|+|||||+..++..+
T Consensus        47 ~~LD~~Lg~G---Gi~~G~i~~I~GppGsGKSTLal~la~~~   85 (356)
T 3hr8_A           47 LAIDIATGVG---GYPRGRIVEIFGQESSGKTTLALHAIAEA   85 (356)
T ss_dssp             HHHHHHTSSS---SEETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHhccC---CccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            45777765 2   33466779999999999999999998765

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.35  E-value=5.1e-05  Score=75.07  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      +-+.|.|+||||||||++.|.+..
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            467899999999999999999875

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.35  E-value=0.00018  Score=70.61  Aligned_cols=27  Identities=26%  Similarity=0.437  Sum_probs=24.3

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .++-+.|+|+||+||||++..|++.+.
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~  130 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISM  130 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            567899999999999999999998774

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.33  E-value=0.0001  Score=67.94  Aligned_cols=42  Identities=21%  Similarity=0.185  Sum_probs=30.6

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA   82 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f   82 (454)
                      ..+.-++|+||||||||||+++|++.+++.-...+.++..++
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~   61 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF   61 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence            456789999999999999999999987521012355655444

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=97.29  E-value=0.00016  Score=81.12  Aligned_cols=46  Identities=11%  Similarity=0.108  Sum_probs=41.3

Q ss_pred             hhhccC--CcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          152 HADQRG--ASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       152 rAL~~~--p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      ++|..+  |.||+||||+ +||+.+...|.++|+.|.+.|. |||++|+.
T Consensus       517 ~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl  566 (972)
T 2r6f_A          517 TQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE  566 (972)
T ss_dssp             HHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred             HHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence            466677  5999999999 8999999999999999998888 99999984

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=97.26  E-value=0.00018  Score=79.99  Aligned_cols=46  Identities=15%  Similarity=0.132  Sum_probs=41.8

Q ss_pred             hhhccCC--cEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          152 HADQRGA--SILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       152 rAL~~~p--~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      ++|..+|  .||+||||+ +||+.+...|.+++..|.+.|. |||++|+.
T Consensus       392 ~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl  441 (842)
T 2vf7_A          392 TQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL  441 (842)
T ss_dssp             HHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred             HHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence            5777888  599999999 8999999999999999998887 99999984

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.25  E-value=8.9e-05  Score=69.36  Aligned_cols=27  Identities=22%  Similarity=0.215  Sum_probs=17.9

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHH-hCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFY-GAT   67 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~-g~l   67 (454)
                      ..++-++|+||||||||||+++|. +..
T Consensus        25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           25 SVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             ECCCEEEEECSCC----CHHHHHHC---
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            456779999999999999999999 876

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.24  E-value=0.00016  Score=80.92  Aligned_cols=25  Identities=24%  Similarity=0.319  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ..++|+||+|+|||+++++|+..+.
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~  613 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLF  613 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4799999999999999999988763

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.21  E-value=0.0011  Score=65.38  Aligned_cols=28  Identities=21%  Similarity=0.189  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ..|+-+.|+|+||+||||++..|++.+.
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~  129 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMFV  129 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence            4567899999999999999999999774

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.20  E-value=0.0005  Score=76.85  Aligned_cols=26  Identities=23%  Similarity=0.324  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .+.+++|+||+|+|||||++.++..+
T Consensus       190 ~~~~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          190 TKNNPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             SCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence            45678999999999999999998754

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.20  E-value=0.00022  Score=65.71  Aligned_cols=28  Identities=21%  Similarity=0.264  Sum_probs=24.8

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATEG   69 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~~   69 (454)
                      .++-++|+||||||||||+++|.+..++
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            4677999999999999999999998763

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=97.20  E-value=0.00038  Score=62.87  Aligned_cols=41  Identities=20%  Similarity=0.301  Sum_probs=36.6

Q ss_pred             cCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecC
Q 012882          156 RGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSN  196 (454)
Q Consensus       156 ~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN  196 (454)
                      ..|++++||||+ +||+.....+.++|..+.+.+.+|++||+
T Consensus        85 ~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~  126 (173)
T 3kta_B           85 KPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLR  126 (173)
T ss_dssp             SCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSC
T ss_pred             CCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEec
Confidence            457999999999 89999999999999998766668888987

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.20  E-value=0.0004  Score=69.78  Aligned_cols=27  Identities=26%  Similarity=0.475  Sum_probs=24.2

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ++.+++|+||+|+||||++++++..+.
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~~l~   97 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAKHLD   97 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence            467899999999999999999998774

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=97.20  E-value=0.00078  Score=65.99  Aligned_cols=40  Identities=20%  Similarity=0.375  Sum_probs=30.6

Q ss_pred             cccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           22 YLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ++.|++++..+.. .. .    +.+.|+||.|+|||||++.+....
T Consensus        15 ~~gR~~el~~L~~-l~-~----~~v~i~G~~G~GKT~L~~~~~~~~   54 (357)
T 2fna_A           15 FFDREKEIEKLKG-LR-A----PITLVLGLRRTGKSSIIKIGINEL   54 (357)
T ss_dssp             SCCCHHHHHHHHH-TC-S----SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             hcChHHHHHHHHH-hc-C----CcEEEECCCCCCHHHHHHHHHHhc
Confidence            5667777666544 21 1    589999999999999999998765

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.17  E-value=0.0002  Score=65.41  Aligned_cols=27  Identities=26%  Similarity=0.333  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ..++-++|+|+||||||||+++|++.+
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            356789999999999999999999865

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.16  E-value=0.0002  Score=70.50  Aligned_cols=29  Identities=24%  Similarity=0.323  Sum_probs=25.7

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ..++++-++|+||||||||||+++|+|.+
T Consensus       122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            34567789999999999999999999987

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.15  E-value=0.00024  Score=64.51  Aligned_cols=27  Identities=19%  Similarity=0.223  Sum_probs=24.3

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .++-++|+||+||||||++++|.+...
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~   31 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDPS   31 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence            467799999999999999999999873

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.15  E-value=0.00067  Score=74.66  Aligned_cols=25  Identities=24%  Similarity=0.259  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ..++|+||+|+|||+++++++..+.
T Consensus       489 ~~~ll~G~~GtGKT~la~~la~~l~  513 (758)
T 1r6b_X          489 GSFLFAGPTGVGKTEVTVQLSKALG  513 (758)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHhc
Confidence            3599999999999999999988763

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.14  E-value=0.0014  Score=67.94  Aligned_cols=28  Identities=11%  Similarity=-0.043  Sum_probs=23.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .+++.-+.|.|++|+|||||+..++..+
T Consensus       200 l~~G~liiI~G~pG~GKTtl~l~ia~~~  227 (454)
T 2r6a_A          200 FQRSDLIIVAARPSVGKTAFALNIAQNV  227 (454)
T ss_dssp             BCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            3456778999999999999999998765

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.12  E-value=0.0014  Score=67.50  Aligned_cols=41  Identities=12%  Similarity=0.163  Sum_probs=29.8

Q ss_pred             cCCcEEEeeCCC--C--CCHHHHHHHHHHHHHHHhCCcEEEEecC
Q 012882          156 RGASILCFDEIQ--T--VDVFAIVALSGIVSRLLSTGTVLVATSN  196 (454)
Q Consensus       156 ~~p~lL~LDEp~--~--lD~~~a~~L~~ll~~L~~~G~vlV~ThN  196 (454)
                      .+++++++|+|.  .  .|......+..+...+....+++|+.+.
T Consensus       178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~  222 (433)
T 3kl4_A          178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDAS  222 (433)
T ss_dssp             TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred             cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCc
Confidence            579999999998  4  7777777777777766544555555544

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.12  E-value=0.00025  Score=67.03  Aligned_cols=28  Identities=18%  Similarity=0.193  Sum_probs=23.9

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .+.+.-++|.||||||||||+++|++.+
T Consensus        22 i~~g~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           22 SMRPFLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             -CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            3456779999999999999999999865

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=97.09  E-value=0.00032  Score=73.96  Aligned_cols=44  Identities=32%  Similarity=0.371  Sum_probs=40.7

Q ss_pred             hhhccCC--cEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecC
Q 012882          152 HADQRGA--SILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSN  196 (454)
Q Consensus       152 rAL~~~p--~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN  196 (454)
                      ++|+.+|  ++|+||||+ ++|+..+..+.++|..+.+ |. ||++||+
T Consensus       410 ~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~  457 (517)
T 4ad8_A          410 VSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHL  457 (517)
T ss_dssp             HHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCC
T ss_pred             HHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecC
Confidence            5788999  999999999 8999999999999999987 66 9999998

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=97.09  E-value=9.7e-05  Score=68.08  Aligned_cols=39  Identities=15%  Similarity=0.172  Sum_probs=26.8

Q ss_pred             CeE-EEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH
Q 012882           43 PKG-LYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML   84 (454)
Q Consensus        43 p~G-l~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~   84 (454)
                      .+| +.+++++|.||||+.=.++-...   ..+.+|.+-.|+.
T Consensus        27 ~~g~i~v~tG~GkGKTTaA~GlalRA~---g~G~rV~~vQF~K   66 (196)
T 1g5t_A           27 ERGIIIVFTGNGKGKTTAAFGTAARAV---GHGKNVGVVQFIK   66 (196)
T ss_dssp             CCCCEEEEESSSSCHHHHHHHHHHHHH---HTTCCEEEEESSC
T ss_pred             cCceEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeC
Confidence            355 88999999999999877654332   2345666665653

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.08  E-value=0.0003  Score=64.92  Aligned_cols=29  Identities=21%  Similarity=0.339  Sum_probs=25.0

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      +..++-++|+||+|+|||||+++|.+..+
T Consensus        16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           16 FQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            34567899999999999999999998664

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.05  E-value=0.00025  Score=63.85  Aligned_cols=24  Identities=21%  Similarity=0.231  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      +-++|+||||||||||+++|++..
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~~~   26 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAAQL   26 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCcHHHHHHHHhccc
Confidence            457899999999999999998843

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.05  E-value=0.0003  Score=62.90  Aligned_cols=26  Identities=27%  Similarity=0.227  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGATEG   69 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l~~   69 (454)
                      .-..|+||||||||||+++|++.+.+
T Consensus        27 g~~~i~G~NGsGKStll~ai~~~l~~   52 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAILFVLGG   52 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHcC
Confidence            36789999999999999999987753

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.05  E-value=0.00024  Score=62.77  Aligned_cols=26  Identities=19%  Similarity=0.452  Sum_probs=23.2

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ++-++|+|++||||||++++|++.+.
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            35689999999999999999999774

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.04  E-value=0.00036  Score=68.56  Aligned_cols=28  Identities=18%  Similarity=0.236  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ..+.-++|.||||||||||+++|.|.+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4567799999999999999999999764

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.01  E-value=0.00038  Score=63.58  Aligned_cols=28  Identities=21%  Similarity=0.179  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ..+.-++|+|++|||||||+++|++.+.
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3578899999999999999999999774

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.01  E-value=0.00028  Score=70.01  Aligned_cols=27  Identities=26%  Similarity=0.327  Sum_probs=24.0

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ++..++|+||||+|||||++++++.+.
T Consensus        50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~   76 (334)
T 1in4_A           50 VLDHVLLAGPPGLGKTTLAHIIASELQ   76 (334)
T ss_dssp             CCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            457799999999999999999999763

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.98  E-value=0.00073  Score=74.48  Aligned_cols=26  Identities=23%  Similarity=0.300  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .+.++.|+||+|+|||++++.++..+
T Consensus       200 ~~~~vLL~G~pGtGKT~la~~la~~l  225 (758)
T 3pxi_A          200 TKNNPVLIGEPGVGKTAIAEGLAQQI  225 (758)
T ss_dssp             SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            45789999999999999999998764

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.97  E-value=0.0003  Score=63.95  Aligned_cols=36  Identities=28%  Similarity=0.329  Sum_probs=24.6

Q ss_pred             CCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEecC
Q 012882          157 GASILCFDEIQTVDVFAIVALSGIVSRLLSTGT-VLVATSN  196 (454)
Q Consensus       157 ~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN  196 (454)
                      ++++|++||.|.++..    +.+.+..+.+.|. |+++.++
T Consensus        76 ~~dvviIDE~Q~~~~~----~~~~l~~l~~~~~~Vi~~Gl~  112 (184)
T 2orw_A           76 DTRGVFIDEVQFFNPS----LFEVVKDLLDRGIDVFCAGLD  112 (184)
T ss_dssp             TEEEEEECCGGGSCTT----HHHHHHHHHHTTCEEEEEEES
T ss_pred             CCCEEEEECcccCCHH----HHHHHHHHHHCCCCEEEEeec
Confidence            5789999999966543    3345566666688 6665654

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.96  E-value=0.00049  Score=61.06  Aligned_cols=26  Identities=23%  Similarity=0.192  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .++-++|+|++||||||++++|++.+
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence            46779999999999999999998864

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.95  E-value=0.00037  Score=65.27  Aligned_cols=27  Identities=33%  Similarity=0.520  Sum_probs=23.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      ...+.-+.|.|++|||||||+++|.+.
T Consensus        17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           17 GTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            345667999999999999999999986

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.93  E-value=0.00034  Score=73.11  Aligned_cols=28  Identities=29%  Similarity=0.202  Sum_probs=25.0

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEG   69 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~   69 (454)
                      +. .-++|+||||||||||+++|+|.+++
T Consensus        28 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~p   55 (483)
T 3euj_A           28 DE-LVTTLSGGNGAGKSTTMAGFVTALIP   55 (483)
T ss_dssp             CS-SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             cc-ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence            44 78999999999999999999998764

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.92  E-value=0.00048  Score=72.58  Aligned_cols=28  Identities=18%  Similarity=0.141  Sum_probs=25.6

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATEG   69 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~~   69 (454)
                      .+.+++|.||||||||||++++.+.+++
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~  286 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFIPP  286 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCC
Confidence            5678999999999999999999999974

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.91  E-value=0.00064  Score=68.51  Aligned_cols=45  Identities=20%  Similarity=0.197  Sum_probs=38.2

Q ss_pred             hhccC-CcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 012882          153 ADQRG-ASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       153 AL~~~-p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      ++..+ |++|+||||+ ++|+..+..+.++|..+...+.|+++||+.
T Consensus       300 ~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~  346 (371)
T 3auy_A          300 ALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHR  346 (371)
T ss_dssp             HHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCG
T ss_pred             HHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChH
Confidence            44678 9999999999 899999999999998875444599999983

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.88  E-value=0.003  Score=67.79  Aligned_cols=28  Identities=25%  Similarity=0.361  Sum_probs=25.2

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATEG   69 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~~   69 (454)
                      .+..++|+||+|||||||+++|++.+++
T Consensus        59 ~g~~vll~Gp~GtGKTtlar~ia~~l~~   86 (604)
T 3k1j_A           59 QKRHVLLIGEPGTGKSMLGQAMAELLPT   86 (604)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence            4578999999999999999999998864

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=96.87  E-value=0.0035  Score=61.19  Aligned_cols=42  Identities=21%  Similarity=0.218  Sum_probs=29.2

Q ss_pred             cccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           22 YLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ++.|++++..+....    ..++.+.|+|+.|+|||||++.+....
T Consensus        14 ~~gR~~el~~L~~~l----~~~~~v~i~G~~G~GKT~Ll~~~~~~~   55 (350)
T 2qen_A           14 IFDREEESRKLEESL----ENYPLTLLLGIRRVGKSSLLRAFLNER   55 (350)
T ss_dssp             SCSCHHHHHHHHHHH----HHCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             cCChHHHHHHHHHHH----hcCCeEEEECCCcCCHHHHHHHHHHHc
Confidence            556665554432210    013689999999999999999998754

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.81  E-value=0.0022  Score=76.92  Aligned_cols=37  Identities=32%  Similarity=0.398  Sum_probs=29.1

Q ss_pred             hhhhhcc-CCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           28 KLDSLVG-RCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        28 ~~~~~~~-~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .++.+++ .   ..+.++++.|+||+|+|||||+..+....
T Consensus      1414 ~LD~lLG~G---Gi~~g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A         1414 SLDIALGAG---GLPMGRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp             HHHHHHSSS---SEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHhcCCC---CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3666655 2   34578999999999999999999987644

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=96.80  E-value=0.0031  Score=62.43  Aligned_cols=25  Identities=32%  Similarity=0.278  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      .+..+.|+||+|+|||||+..++..
T Consensus       122 ~gsviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          122 ASGMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            4556789999999999999998753

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.79  E-value=0.0014  Score=72.21  Aligned_cols=26  Identities=23%  Similarity=0.261  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .+.+++|+||+|+||||+++.++..+
T Consensus       206 ~~~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          206 RKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence            56889999999999999999998754

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=96.77  E-value=0.00068  Score=68.18  Aligned_cols=26  Identities=27%  Similarity=0.356  Sum_probs=22.9

Q ss_pred             CCeEEEE--EcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYL--YGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L--~GpnGsGKTTLm~ll~g~l   67 (454)
                      .+..++|  +||.|+|||||++.++..+
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            4678999  9999999999999998765

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=96.75  E-value=0.0023  Score=70.74  Aligned_cols=24  Identities=29%  Similarity=0.350  Sum_probs=20.2

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      .+-+.+.||+||||||++.++...
T Consensus       109 ~~~vii~gpTGSGKTtllp~ll~~  132 (773)
T 2xau_A          109 NQIMVFVGETGSGKTTQIPQFVLF  132 (773)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            356999999999999988888653

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.74  E-value=0.00064  Score=69.92  Aligned_cols=27  Identities=26%  Similarity=0.455  Sum_probs=23.0

Q ss_pred             CCCeE--EEEEcCCCChHHHHHHHHHhCC
Q 012882           41 PAPKG--LYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        41 ~~p~G--l~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ..+.-  ++|+|+||||||||+++|+|..
T Consensus        38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           38 SQGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             C-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             cCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            34555  8999999999999999999974

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.74  E-value=0.00056  Score=64.29  Aligned_cols=37  Identities=19%  Similarity=0.354  Sum_probs=26.1

Q ss_pred             CCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          157 GASILCFDEIQTVDVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       157 ~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      +++++++||.+.++..    +.+.+..+.+.|+ |+++.++.
T Consensus        89 ~~dvViIDEaQ~l~~~----~ve~l~~L~~~gi~Vil~Gl~~  126 (223)
T 2b8t_A           89 ETKVIGIDEVQFFDDR----ICEVANILAENGFVVIISGLDK  126 (223)
T ss_dssp             TCCEEEECSGGGSCTH----HHHHHHHHHHTTCEEEEECCSB
T ss_pred             CCCEEEEecCccCcHH----HHHHHHHHHhCCCeEEEEeccc
Confidence            5899999999976643    3345566666788 77776653

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.71  E-value=0.00093  Score=58.50  Aligned_cols=23  Identities=30%  Similarity=0.368  Sum_probs=19.7

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      +.-..|+||||+||||++++|.-
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            34578999999999999999864

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=96.71  E-value=0.0056  Score=64.35  Aligned_cols=22  Identities=23%  Similarity=0.335  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCChHHHHHHHHHh
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      ..+++.|++||||||+++.+..
T Consensus       168 pHlLIaG~TGSGKSt~L~~li~  189 (512)
T 2ius_A          168 PHLLVAGTTGSGASVGVNAMIL  189 (512)
T ss_dssp             CSEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999865

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.68  E-value=0.001  Score=68.34  Aligned_cols=26  Identities=19%  Similarity=0.183  Sum_probs=23.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGATEG   69 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l~~   69 (454)
                      .-++|.||||||||||++++.+.+++
T Consensus       168 gii~I~GpnGSGKTTlL~allg~l~~  193 (418)
T 1p9r_A          168 GIILVTGPTGSGKSTTLYAGLQELNS  193 (418)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhcCC
Confidence            44789999999999999999998864

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.67  E-value=0.00043  Score=65.83  Aligned_cols=27  Identities=41%  Similarity=0.692  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ..|+|++|+||+|+|||||++++++.+
T Consensus        42 ~~~~~vll~G~~GtGKT~la~~la~~~   68 (268)
T 2r62_A           42 KIPKGVLLVGPPGTGKTLLAKAVAGEA   68 (268)
T ss_dssp             CCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence            467899999999999999999998855

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=96.66  E-value=0.0034  Score=77.50  Aligned_cols=39  Identities=28%  Similarity=0.422  Sum_probs=27.0

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA   82 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f   82 (454)
                      .++++.|+||+|||||++++.+....++  ..-..++|...
T Consensus      1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~--~~~~~infsa~ 1304 (2695)
T 4akg_A         1266 SKRGIILCGPPGSGKTMIMNNALRNSSL--YDVVGINFSKD 1304 (2695)
T ss_dssp             HTCEEEEECSTTSSHHHHHHHHHHSCSS--CEEEEEECCTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHhcCCC--CceEEEEeecC
Confidence            3689999999999999999555444432  12345666543

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.65  E-value=0.00094  Score=65.36  Aligned_cols=27  Identities=22%  Similarity=0.176  Sum_probs=24.4

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGATEG   69 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l~~   69 (454)
                      ++-++|+||||||||||+++|.|...+
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g~~~~  195 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINPGLKL  195 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred             CCeEEEECCCCCcHHHHHHHhcccccc
Confidence            567899999999999999999998864

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=96.65  E-value=0.00026  Score=66.80  Aligned_cols=25  Identities=32%  Similarity=0.300  Sum_probs=22.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHhCCCC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGATEG   69 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~l~~   69 (454)
                      -++|+||||||||||+++|+|.+++
T Consensus        29 ~~~i~GpnGsGKSTll~~i~g~~~~   53 (227)
T 1qhl_A           29 VTTLSGGNGAGKSTTMAAFVTALIP   53 (227)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhccccc
Confidence            3578999999999999999998864

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=96.61  E-value=0.0019  Score=59.41  Aligned_cols=37  Identities=22%  Similarity=0.325  Sum_probs=26.8

Q ss_pred             cCCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          156 RGASILCFDEIQTVDVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       156 ~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      .+.++|++||.|-+ . +   +.++++.|.+.|+ ||++..+.
T Consensus        90 ~~~DvIlIDEaQFf-k-~---~ve~~~~L~~~gk~VI~~GL~~  127 (195)
T 1w4r_A           90 LGVAVIGIDEGQFF-P-D---IVEFCEAMANAGKTVIVAALDG  127 (195)
T ss_dssp             HTCSEEEESSGGGC-T-T---HHHHHHHHHHTTCEEEEEEESB
T ss_pred             cCCCEEEEEchhhh-H-H---HHHHHHHHHHCCCeEEEEeccc
Confidence            46899999999966 2 2   4456688888898 66666553

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.60  E-value=0.0013  Score=60.21  Aligned_cols=28  Identities=25%  Similarity=0.160  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ..+.-++|.|++|||||||+++|.+.++
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~   47 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQTLR   47 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4567899999999999999999998764

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.59  E-value=0.0012  Score=66.86  Aligned_cols=29  Identities=24%  Similarity=0.297  Sum_probs=25.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .+.+++++|+||+|||||||++++++...
T Consensus       166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~  194 (377)
T 1svm_A          166 IPKKRYWLFKGPIDSGKTTLAAALLELCG  194 (377)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            45678999999999999999999998653

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.58  E-value=0.0068  Score=60.84  Aligned_cols=38  Identities=32%  Similarity=0.368  Sum_probs=27.8

Q ss_pred             hhhhhhcc-CCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           27 RKLDSLVG-RCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        27 ~~~~~~~~-~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ..++.+++ .   ..+.+.-+.|+|++|+|||||+..++...
T Consensus        49 ~~LD~~Lg~G---Gl~~G~ii~I~G~pGsGKTtLal~la~~~   87 (356)
T 1u94_A           49 LSLDIALGAG---GLPMGRIVEIYGPESSGKTTLTLQVIAAA   87 (356)
T ss_dssp             HHHHHHTSSS---SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHhccC---CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34666654 1   23466789999999999999998877543

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.57  E-value=0.0012  Score=69.06  Aligned_cols=29  Identities=28%  Similarity=0.290  Sum_probs=25.7

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ...+.-++|+|+||||||||+++|+|.+.
T Consensus       290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~  318 (503)
T 2yhs_A          290 GKAPFVILMVGVNGVGKTTTIGKLARQFE  318 (503)
T ss_dssp             SCTTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCcccHHHHHHHHHHHhh
Confidence            34577899999999999999999999875

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.56  E-value=0.0016  Score=59.46  Aligned_cols=28  Identities=21%  Similarity=0.108  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ..+.-++|.|++||||||++++|.+.++
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~   46 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKHLP   46 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4567799999999999999999999763

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.56  E-value=0.0014  Score=64.95  Aligned_cols=28  Identities=18%  Similarity=0.213  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ..|.-++|.||||||||||+++|.+.+.
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4577899999999999999999998764

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.55  E-value=0.0013  Score=60.03  Aligned_cols=22  Identities=36%  Similarity=0.549  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHh
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      .-++|.|++||||||+.++|++
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999988

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.53  E-value=0.0013  Score=60.79  Aligned_cols=25  Identities=24%  Similarity=0.274  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      +.-++|.|++||||||++++|++.+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3569999999999999999998865

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.52  E-value=0.0014  Score=62.25  Aligned_cols=25  Identities=20%  Similarity=0.255  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      .+.-++|.||+||||||++++|+..
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La~~   50 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALAES   50 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHh
Confidence            4567999999999999999999943

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.52  E-value=0.0014  Score=59.67  Aligned_cols=27  Identities=33%  Similarity=0.433  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .+++.++|+|++||||||+.+.|++.+
T Consensus        23 ~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           23 NAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            346789999999999999999998865

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.51  E-value=0.011  Score=58.81  Aligned_cols=36  Identities=22%  Similarity=0.290  Sum_probs=27.0

Q ss_pred             hhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           28 KLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        28 ~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      .++.+++.   ..+.+.-+.|+|++|+|||||+..++..
T Consensus       110 ~LD~~LgG---Gl~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          110 EFDKLLGG---GIESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             HHHHHTTS---SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             hHHHHhcC---CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            35555542   3345667899999999999999988874

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.50  E-value=0.0014  Score=65.86  Aligned_cols=27  Identities=22%  Similarity=0.404  Sum_probs=24.3

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .++-++|+|+||+|||||+++|.|...
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             CCCEEEEECCCCccHHHHHHHHhcccc
Confidence            356799999999999999999999875

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.50  E-value=0.0012  Score=59.56  Aligned_cols=25  Identities=28%  Similarity=0.368  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      --+.|+|+||+|||||++.|.+...
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~~   54 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNEF   54 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCC
Confidence            4589999999999999999998653

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=96.49  E-value=0.0012  Score=59.62  Aligned_cols=24  Identities=29%  Similarity=0.437  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      --+.|+|++|+|||||++.|.|..
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCC
Confidence            358899999999999999999864

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.49  E-value=0.0012  Score=65.70  Aligned_cols=38  Identities=16%  Similarity=0.139  Sum_probs=28.7

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEe
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHF   79 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f   79 (454)
                      ..+.-++|+|+||||||||+++|.|.+.+ ..++..+..
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~-~~g~v~i~~   90 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGSLLTA-AGHKVAVLA   90 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhhhh-CCCEEEEEE
Confidence            45677999999999999999999997752 234444443

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.46  E-value=0.0013  Score=59.86  Aligned_cols=22  Identities=36%  Similarity=0.610  Sum_probs=20.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHhCC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      -++|.|++||||||++++|++ +
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~   24 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-L   24 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-T
T ss_pred             EEEEECCCCcCHHHHHHHHHH-C
Confidence            488999999999999999998 5

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=96.43  E-value=0.0011  Score=62.44  Aligned_cols=44  Identities=18%  Similarity=0.122  Sum_probs=30.2

Q ss_pred             cCCcEEEeeCCCC--CCHHHHHHHHHHHHHHHhCCcEEEEecCCCc
Q 012882          156 RGASILCFDEIQT--VDVFAIVALSGIVSRLLSTGTVLVATSNRAP  199 (454)
Q Consensus       156 ~~p~lL~LDEp~~--lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P  199 (454)
                      ..|+++++||+..  .+......+++.+..+...|.-+++|.|.-.
T Consensus        83 ~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh  128 (228)
T 2r8r_A           83 AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQH  128 (228)
T ss_dssp             HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGG
T ss_pred             cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccc
Confidence            4699999999983  4433344556666667888886667777543

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=96.42  E-value=0.0028  Score=65.02  Aligned_cols=41  Identities=12%  Similarity=0.327  Sum_probs=36.8

Q ss_pred             cCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecC
Q 012882          156 RGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSN  196 (454)
Q Consensus       156 ~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN  196 (454)
                      .+|++|+||||+ +||+..+..+.++|..+...|. +||+||+
T Consensus       354 ~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~  396 (430)
T 1w1w_A          354 QPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLK  396 (430)
T ss_dssp             SCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSC
T ss_pred             CCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECC
Confidence            589999999999 8999999999999999876566 8888887

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.41  E-value=0.001  Score=59.85  Aligned_cols=25  Identities=28%  Similarity=0.271  Sum_probs=22.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      +.+.|+|++|||||||+++|.+.+.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~   27 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILR   27 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhh
Confidence            5689999999999999999999875

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.40  E-value=0.0022  Score=62.84  Aligned_cols=27  Identities=22%  Similarity=0.181  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATEG   69 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~~   69 (454)
                      .++-++|+||||+|||||+++|. ..++
T Consensus       164 ~G~i~~l~G~sG~GKSTLln~l~-~~~~  190 (302)
T 2yv5_A          164 EGFICILAGPSGVGKSSILSRLT-GEEL  190 (302)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHH-SCCC
T ss_pred             cCcEEEEECCCCCCHHHHHHHHH-HhhC
Confidence            35779999999999999999999 7753

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.37  E-value=0.0088  Score=55.81  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=19.0

Q ss_pred             CeEEEEEcCCCChHHHHHHHHH
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFY   64 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~   64 (454)
                      ++-+.+.||+||||||++.++.
T Consensus        76 g~~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           76 NSVVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCcHHhHHHHH
Confidence            5779999999999999887764

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=96.36  E-value=0.0019  Score=66.32  Aligned_cols=28  Identities=25%  Similarity=0.192  Sum_probs=24.6

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATEG   69 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~~   69 (454)
                      .+.-.+|+||||||||||+++|++.+.+
T Consensus        25 ~~~~~~i~G~nG~GKstll~ai~~~~~~   52 (430)
T 1w1w_A           25 ESNFTSIIGPNGSGKSNMMDAISFVLGV   52 (430)
T ss_dssp             TCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence            3567899999999999999999998754

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.34  E-value=0.0017  Score=59.29  Aligned_cols=27  Identities=22%  Similarity=0.256  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .++-++|.||+|||||||++.|...++
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            567799999999999999999988764

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.30  E-value=0.0023  Score=58.89  Aligned_cols=25  Identities=28%  Similarity=0.328  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      +.-..|+||||+||||++++|.-.+
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~~~l   47 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAILVGL   47 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence            4557899999999999999986443

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=96.29  E-value=0.0012  Score=59.86  Aligned_cols=27  Identities=11%  Similarity=0.196  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ..+.-++|+|+||+|||||++.|.|..
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~   50 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQK   50 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            455679999999999999999998865

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.27  E-value=0.0022  Score=56.72  Aligned_cols=26  Identities=15%  Similarity=0.277  Sum_probs=23.4

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      |+-++|.|++||||||+.+.|...++
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            46799999999999999999998774

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.27  E-value=0.0018  Score=58.91  Aligned_cols=25  Identities=28%  Similarity=0.434  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ++-++|.|++||||||+++.|++.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            5679999999999999999998765

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=96.23  E-value=0.0025  Score=59.46  Aligned_cols=61  Identities=21%  Similarity=0.334  Sum_probs=36.9

Q ss_pred             cCCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEecCCCccchhcCCchhhhhHHHHHHHHhhcccccc
Q 012882          156 RGASILCFDEIQTVDVFAIVALSGIVSRLLSTGT-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPI  228 (454)
Q Consensus       156 ~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l  228 (454)
                      .+.+++++||.|-++..    +...+..+.+.|+ |+++.-+.        .++++.|-+...+|.---.|..+
T Consensus       100 ~~~dvV~IDEaQFf~~~----~v~~l~~la~~gi~Vi~~GLd~--------DF~~~~F~~~~~Ll~~Ad~v~kl  161 (219)
T 3e2i_A          100 TNVDVIGIDEVQFFDDE----IVSIVEKLSADGHRVIVAGLDM--------DFRGEPFEPMPKLMAVSEQVTKL  161 (219)
T ss_dssp             TTCSEEEECCGGGSCTH----HHHHHHHHHHTTCEEEEEEESB--------CTTSCBCTTHHHHHHHCSEEEEE
T ss_pred             cCCCEEEEechhcCCHH----HHHHHHHHHHCCCEEEEeeccc--------ccccCCCccHHHHHHhcceEEEe
Confidence            46899999999976653    3344555556788 77766543        23345566555555433333333

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.19  E-value=0.003  Score=56.23  Aligned_cols=26  Identities=23%  Similarity=0.202  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .+.-+.|.|++||||||++++|.+.+
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l   29 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYL   29 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            46779999999999999999999866

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.17  E-value=0.0098  Score=58.57  Aligned_cols=37  Identities=27%  Similarity=0.339  Sum_probs=27.3

Q ss_pred             hhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           28 KLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        28 ~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .++.+++.   ..+.+.-+.|+|++|+|||||+..++...
T Consensus        95 ~LD~~L~G---Gl~~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A           95 ALDGLLAG---GIETRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             HHHHHTTT---SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             hHHHhcCC---CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            35555532   23456779999999999999999887643

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.16  E-value=0.013  Score=59.04  Aligned_cols=38  Identities=26%  Similarity=0.281  Sum_probs=26.8

Q ss_pred             hhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           27 RKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        27 ~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      ..++.+++.  -..+.+..+.|+|++|+|||||+-.++..
T Consensus        60 ~~LD~~Lg~--GGl~~G~li~I~G~pGsGKTtlal~la~~   97 (366)
T 1xp8_A           60 LSLDLALGV--GGIPRGRITEIYGPESGGKTTLALAIVAQ   97 (366)
T ss_dssp             HHHHHHTSS--SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             HHHHHHhCC--CCccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence            346666541  02345677999999999999998777653

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.16  E-value=0.0011  Score=65.26  Aligned_cols=27  Identities=22%  Similarity=0.299  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .++-++|+|+||+|||||+++|.|...
T Consensus       172 ~G~~~~lvG~sG~GKSTLln~L~g~~~  198 (307)
T 1t9h_A          172 QDKTTVFAGQSGVGKSSLLNAISPELG  198 (307)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHhccccc
Confidence            467899999999999999999999775

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=96.12  E-value=0.0029  Score=63.60  Aligned_cols=21  Identities=38%  Similarity=0.556  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHh
Q 012882           45 GLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      -.+|+||||+|||||+++|++
T Consensus        28 ~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           28 VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            578999999999999999987

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.06  E-value=0.0045  Score=55.40  Aligned_cols=28  Identities=25%  Similarity=0.262  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ..+.-+.|.|++||||||+++.|+..+.
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~   38 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADLLQ   38 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4567899999999999999999998764

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.05  E-value=0.0029  Score=55.30  Aligned_cols=23  Identities=13%  Similarity=-0.057  Sum_probs=20.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHhCC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      -+.|.|++||||||+.+.|...+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998764

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.02  E-value=0.0031  Score=60.68  Aligned_cols=27  Identities=26%  Similarity=0.463  Sum_probs=24.3

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .|.+++|+||+|+|||+++++++..+.
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l~   75 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLAN   75 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            578999999999999999999988664

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.00  E-value=0.0044  Score=55.62  Aligned_cols=26  Identities=27%  Similarity=0.517  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      +.++-++|+|++||||||+.+.|+..
T Consensus         8 ~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            8 PKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            34567999999999999999999886

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=95.98  E-value=0.058  Score=55.60  Aligned_cols=27  Identities=30%  Similarity=0.322  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .|.-+.+.|++|+||||++..|+..+.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~  125 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQ  125 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence            477899999999999999999987553

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=95.98  E-value=0.0047  Score=65.96  Aligned_cols=25  Identities=20%  Similarity=0.259  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .+-+.|.|++|+||||++..+...+
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~~l  228 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVADLA  228 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4678899999999999999998755

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=95.96  E-value=0.0042  Score=54.68  Aligned_cols=23  Identities=30%  Similarity=0.356  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      |+-+.|.|++||||||+.+.|..
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEecCCCCCHHHHHHHHHh
Confidence            46789999999999999999987

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=95.92  E-value=0.0049  Score=60.06  Aligned_cols=28  Identities=25%  Similarity=0.379  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ..|.-++|.|++|||||||+++|.+.+.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4577899999999999999999998774

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=95.90  E-value=0.0064  Score=55.55  Aligned_cols=36  Identities=25%  Similarity=0.408  Sum_probs=25.3

Q ss_pred             CCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEecC
Q 012882          157 GASILCFDEIQTVDVFAIVALSGIVSRLLSTGT-VLVATSN  196 (454)
Q Consensus       157 ~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN  196 (454)
                      +.+++++||.+.+|...    ...++.+...|+ |+++..+
T Consensus        81 ~~dvViIDEaqfl~~~~----v~~l~~l~~~~~~Vi~~Gl~  117 (191)
T 1xx6_A           81 DTEVIAIDEVQFFDDEI----VEIVNKIAESGRRVICAGLD  117 (191)
T ss_dssp             TCSEEEECSGGGSCTHH----HHHHHHHHHTTCEEEEEECS
T ss_pred             cCCEEEEECCCCCCHHH----HHHHHHHHhCCCEEEEEecc
Confidence            47999999999776543    345666666788 6666554

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=95.88  E-value=0.014  Score=57.29  Aligned_cols=23  Identities=9%  Similarity=-0.156  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      +..+.|+||+|+||||+..+|+.
T Consensus        18 ~~~~Lf~Gp~G~GKtt~a~~la~   40 (305)
T 2gno_A           18 GISILINGEDLSYPREVSLELPE   40 (305)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46788999999999999999975

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=95.87  E-value=0.0047  Score=63.83  Aligned_cols=28  Identities=29%  Similarity=0.277  Sum_probs=25.2

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .+|+|+.|+||+|+|||||.++++..+.
T Consensus        61 ~~~~~iLl~GppGtGKT~la~ala~~l~   88 (456)
T 2c9o_A           61 MAGRAVLLAGPPGTGKTALALAIAQELG   88 (456)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence            4679999999999999999999998764

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=95.87  E-value=0.0047  Score=62.08  Aligned_cols=38  Identities=13%  Similarity=0.222  Sum_probs=32.5

Q ss_pred             cCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEec
Q 012882          156 RGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATS  195 (454)
Q Consensus       156 ~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~Th  195 (454)
                      .+|+||+||||+ +||+..+..|.+++..+.  .++|++||
T Consensus       291 ~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th  329 (359)
T 2o5v_A          291 GEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE  329 (359)
T ss_dssp             SSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS
T ss_pred             CCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe
Confidence            799999999999 899999999999998874  24666666

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=95.86  E-value=0.0055  Score=54.71  Aligned_cols=26  Identities=23%  Similarity=0.332  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .|+-+.|.|++||||||+.+.|...+
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            46789999999999999999998754

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=95.86  E-value=0.0041  Score=54.34  Aligned_cols=24  Identities=25%  Similarity=0.457  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .-+.|+|++|+|||||++.|.+..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            458899999999999999999853

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=95.83  E-value=0.0048  Score=54.91  Aligned_cols=25  Identities=32%  Similarity=0.450  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ++.++|+|++||||||+.+.|+..+
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999998755

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=95.82  E-value=0.0042  Score=54.07  Aligned_cols=23  Identities=26%  Similarity=0.430  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .-+.|.|++||||||+.+.| ...
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~   24 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KER   24 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHC
Confidence            35789999999999999999 443

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=95.82  E-value=0.0045  Score=58.70  Aligned_cols=29  Identities=24%  Similarity=0.360  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ...|.-+.|.|++||||||+.+.|...+.
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            45678899999999999999999988764

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=95.80  E-value=0.0047  Score=54.99  Aligned_cols=25  Identities=16%  Similarity=0.231  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      +.-+.|.|++||||||+.+.|+..+
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4568999999999999999998644

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.75  E-value=0.0044  Score=61.82  Aligned_cols=28  Identities=29%  Similarity=0.456  Sum_probs=25.1

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .++.++.|+||+|+|||++.++++..+.
T Consensus        49 ~~~~~vll~GppGtGKT~la~~ia~~~~   76 (363)
T 3hws_A           49 LGKSNILLIGPTGSGKTLLAETLARLLD   76 (363)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            3678999999999999999999998774

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=95.74  E-value=0.0048  Score=56.21  Aligned_cols=23  Identities=22%  Similarity=0.540  Sum_probs=20.1

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      +.|.||+|+|||||++.|....|
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~~   26 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            78999999999999999976543

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=95.69  E-value=0.0068  Score=55.57  Aligned_cols=28  Identities=21%  Similarity=0.148  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ..++-+.|.|++||||||+++.|.+.+.
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3567899999999999999999998764

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=95.68  E-value=0.0078  Score=56.05  Aligned_cols=61  Identities=18%  Similarity=0.239  Sum_probs=36.7

Q ss_pred             CCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccC
Q 012882          157 GASILCFDEIQTVDVFAIVALSGIVSRLLSTGT-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIG  229 (454)
Q Consensus       157 ~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~  229 (454)
                      +.+++++||.|.+|...   + +++..+...|+ |+++..+..        ++++.|-+.-.+|.---.|.++.
T Consensus       101 ~~dvViIDEaQF~~~~~---V-~~l~~l~~~~~~Vi~~Gl~~D--------F~~~~F~~~~~Ll~~AD~Vtel~  162 (214)
T 2j9r_A          101 EMDVIAIDEVQFFDGDI---V-EVVQVLANRGYRVIVAGLDQD--------FRGLPFGQVPQLMAIAEHVTKLQ  162 (214)
T ss_dssp             SCCEEEECCGGGSCTTH---H-HHHHHHHHTTCEEEEEECSBC--------TTSCBCTTHHHHHHHCSEEEECC
T ss_pred             CCCEEEEECcccCCHHH---H-HHHHHHhhCCCEEEEEecccc--------cccCccccHHHHHHhcccEEeee
Confidence            47999999999766432   2 55666666788 666665432        34445655555544333444443

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=95.68  E-value=0.0063  Score=54.02  Aligned_cols=26  Identities=27%  Similarity=0.310  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .++.++|.|++||||||+.+.|+..+
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence            35669999999999999999998654

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=95.67  E-value=0.012  Score=70.65  Aligned_cols=27  Identities=33%  Similarity=0.368  Sum_probs=23.0

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      .+.+..+.|+||+|||||||+..|.-.
T Consensus      1078 i~~g~~vll~G~~GtGKT~la~~~~~e 1104 (2050)
T 3cmu_A         1078 LPMGRIVEIYGPESSGKTTLTLQVIAA 1104 (2050)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            346788999999999999999998643

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=95.65  E-value=0.0051  Score=58.65  Aligned_cols=26  Identities=31%  Similarity=0.516  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ++-++|+|++||||||+.++|++.+.
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg   73 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLG   73 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            56799999999999999999998653

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=95.64  E-value=0.0056  Score=54.17  Aligned_cols=23  Identities=26%  Similarity=0.398  Sum_probs=20.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHhCC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      -+.|.|++||||||+.+.|+..+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            48899999999999999998765

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=95.62  E-value=0.0072  Score=53.42  Aligned_cols=24  Identities=25%  Similarity=0.455  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      +.-+.|+|++|+|||||++.|.+.
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            456999999999999999999984

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.61  E-value=0.0046  Score=65.65  Aligned_cols=27  Identities=19%  Similarity=0.255  Sum_probs=24.3

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .+.-++|+|+||||||||+++|++.+.
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L~  394 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARLM  394 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhhc
Confidence            456799999999999999999999875

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=95.57  E-value=0.0061  Score=54.80  Aligned_cols=24  Identities=21%  Similarity=0.430  Sum_probs=21.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHhCCC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      -++|.|++||||||+.+.|+..+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            478999999999999999988653

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=95.54  E-value=0.0074  Score=53.65  Aligned_cols=25  Identities=20%  Similarity=0.170  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      +.-+.|.|++||||||+.+.|...+
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l   27 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNL   27 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4568999999999999999998755

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=95.54  E-value=0.0057  Score=54.40  Aligned_cols=22  Identities=41%  Similarity=0.656  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHhC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      -+.|+|++|+|||||++.|.+.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999884

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=95.54  E-value=0.032  Score=56.38  Aligned_cols=54  Identities=24%  Similarity=0.280  Sum_probs=39.7

Q ss_pred             CCcEEEeeCCCCCCHHHHHHHHHHHHHHH-h---------CCcEEEEecCCCccchhcCCchhh
Q 012882          157 GASILCFDEIQTVDVFAIVALSGIVSRLL-S---------TGTVLVATSNRAPWDLNQDGMQRE  210 (454)
Q Consensus       157 ~p~lL~LDEp~~lD~~~a~~L~~ll~~L~-~---------~G~vlV~ThN~~P~dLy~~~l~r~  210 (454)
                      +--.|+|||+.-++...+..|.++|..-. .         -.+.+|+|+|+.+.++...|..|+
T Consensus       231 ~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~  294 (387)
T 1ny5_A          231 DGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFRE  294 (387)
T ss_dssp             TTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCH
T ss_pred             CCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccH
Confidence            35699999999899888888888777521 0         134588888998888776665443

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.53  E-value=0.0063  Score=56.40  Aligned_cols=27  Identities=19%  Similarity=0.234  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ...++.++||+|+||||+..+++..+.
T Consensus        57 kkn~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           57 KKNCLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            346899999999999999999988764

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=95.52  E-value=0.0072  Score=58.63  Aligned_cols=29  Identities=34%  Similarity=0.527  Sum_probs=24.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ...|.-+.|.||+||||||+.+.|...++
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~~   58 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ   58 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34578899999999999999999987663

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=95.51  E-value=0.0084  Score=53.95  Aligned_cols=26  Identities=27%  Similarity=0.423  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      ..+.-++|.|++||||||+.+.|+..
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            35678999999999999999999875

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=95.50  E-value=0.0078  Score=53.06  Aligned_cols=25  Identities=20%  Similarity=0.371  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      +.-+.|+|++|+|||||++.|.+..
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4568999999999999999999853

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=95.47  E-value=0.0061  Score=62.96  Aligned_cols=28  Identities=25%  Similarity=0.425  Sum_probs=25.4

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .+|+|+.|+||+||||||+.+++++.+.
T Consensus        48 ~~~~~iLl~GppGtGKT~lar~lA~~l~   75 (444)
T 1g41_A           48 VTPKNILMIGPTGVGKTEIARRLAKLAN   75 (444)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             cCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence            3578999999999999999999999875

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.46  E-value=0.0085  Score=55.95  Aligned_cols=27  Identities=15%  Similarity=0.165  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ..+.-++|.|++||||||+.++|++.+
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            456679999999999999999998754

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=95.46  E-value=0.0085  Score=53.33  Aligned_cols=25  Identities=20%  Similarity=0.324  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      |.-+.|.|++||||||+.+.|+..+
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            5779999999999999999997654

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=95.42  E-value=0.0053  Score=54.39  Aligned_cols=27  Identities=19%  Similarity=0.246  Sum_probs=19.0

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .|.-+.|.|++||||||+.+.|...+.
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~   30 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLP   30 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHST
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            456799999999999999999987653

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=95.39  E-value=0.0082  Score=61.01  Aligned_cols=39  Identities=5%  Similarity=-0.076  Sum_probs=28.9

Q ss_pred             CC--cEEEeeCCC-CCCHHHHHHHHHHHHHH-HhCCcEEEEecC
Q 012882          157 GA--SILCFDEIQ-TVDVFAIVALSGIVSRL-LSTGTVLVATSN  196 (454)
Q Consensus       157 ~p--~lL~LDEp~-~lD~~~a~~L~~ll~~L-~~~G~vlV~ThN  196 (454)
                      +|  +++++||+. +.|+......+..+..+ ...|..++ +|+
T Consensus       139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~-sh~  181 (392)
T 1ni3_A          139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE-MKA  181 (392)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS-HHH
T ss_pred             CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc-ccc
Confidence            67  899999998 78888888888888777 55554332 664

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=95.34  E-value=0.011  Score=53.23  Aligned_cols=25  Identities=20%  Similarity=0.014  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ++-+.|.|+.||||||+.+.|...+
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            5679999999999999999999876

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=95.32  E-value=0.0099  Score=53.14  Aligned_cols=26  Identities=19%  Similarity=0.285  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .+.-++|.|++||||||+.+.|+..+
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            35679999999999999999998755

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=95.30  E-value=0.0093  Score=56.65  Aligned_cols=24  Identities=29%  Similarity=0.228  Sum_probs=21.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHhCCC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      -+.|.||+|||||||.+.|++.+.
T Consensus         3 li~I~G~~GSGKSTla~~La~~~~   26 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQETG   26 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhcCC
Confidence            578999999999999999987653

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=95.30  E-value=0.013  Score=52.95  Aligned_cols=27  Identities=15%  Similarity=0.263  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ..++-+.|.|++||||||+.+.|+..+
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            346779999999999999999998765

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=95.27  E-value=0.012  Score=53.19  Aligned_cols=27  Identities=19%  Similarity=0.153  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ..|.-+.|.|++||||||+.+.|+..+
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            346679999999999999999998754

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=95.25  E-value=0.0087  Score=53.17  Aligned_cols=24  Identities=17%  Similarity=0.131  Sum_probs=21.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHhCCC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      -+.|.|++||||||+.+.|...+.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999987653

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=95.23  E-value=0.011  Score=59.06  Aligned_cols=27  Identities=22%  Similarity=0.295  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .+.-+.|+|++|+|||||++.|.+...
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~~   99 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKMLT   99 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence            356699999999999999999998653

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=95.23  E-value=0.012  Score=53.26  Aligned_cols=26  Identities=23%  Similarity=0.152  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ++-++|.|++||||||+.+.|...+.
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            46789999999999999999988664

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=95.21  E-value=0.018  Score=59.50  Aligned_cols=23  Identities=26%  Similarity=0.407  Sum_probs=20.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHhCC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      -+.|.|+.|+||||++..+...+
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l   69 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEAL   69 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            78899999999999999988765

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=95.20  E-value=0.011  Score=54.18  Aligned_cols=23  Identities=30%  Similarity=0.455  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      |.-++|.|++||||||+.++|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999987

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=95.16  E-value=0.01  Score=58.03  Aligned_cols=26  Identities=23%  Similarity=0.456  Sum_probs=22.5

Q ss_pred             CCCeE-EEEEcCCCChHHHHHHHHHhC
Q 012882           41 PAPKG-LYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        41 ~~p~G-l~L~GpnGsGKTTLm~ll~g~   66 (454)
                      ++|.| +.|+|.+|+|||||++.|.|.
T Consensus         7 ~~~~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A            7 HMKVGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            44555 889999999999999999985

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=95.16  E-value=0.011  Score=59.47  Aligned_cols=43  Identities=2%  Similarity=0.037  Sum_probs=27.0

Q ss_pred             Hhc-CCEEEEcCCCCCCcCCchhhhhhhhhHhhhhhcCceEEEEecC
Q 012882          319 AHN-YHTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLFCSAAS  364 (454)
Q Consensus       319 a~~-f~ti~i~~VP~l~~~~~~~arRFi~lID~lYe~~~kl~~~a~~  364 (454)
                      +.. -.+++++++-  +.-+...+..+..+|..+-+. ..+++++..
T Consensus       302 ~~~~~~~lllDEp~--~~LD~~~~~~l~~~l~~~~~~-~~vi~~th~  345 (371)
T 3auy_A          302 IGNRVECIILDEPT--VYLDENRRAKLAEIFRKVKSI-PQMIIITHH  345 (371)
T ss_dssp             HSSCCSEEEEESTT--TTCCHHHHHHHHHHHHHCCSC-SEEEEEESC
T ss_pred             hcCCCCeEEEeCCC--CcCCHHHHHHHHHHHHHhccC-CeEEEEECh
Confidence            446 7888888753  334566677788888776333 356666644

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=95.16  E-value=0.012  Score=56.56  Aligned_cols=27  Identities=19%  Similarity=0.400  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ...++.|+||+|+|||+|+++|+..++
T Consensus       103 ~~n~~~l~GppgtGKt~~a~ala~~~~  129 (267)
T 1u0j_A          103 KRNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence            356899999999999999999998654

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=95.15  E-value=0.014  Score=52.83  Aligned_cols=26  Identities=19%  Similarity=0.086  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .|+-++|.|+.||||||+.+.|...+
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l   34 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYL   34 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            46779999999999999999998654

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=95.14  E-value=0.012  Score=52.31  Aligned_cols=26  Identities=23%  Similarity=0.346  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .++-+.|.|++||||||+.+.|...+
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            35789999999999999999998754

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=95.13  E-value=0.098  Score=64.83  Aligned_cols=27  Identities=26%  Similarity=0.369  Sum_probs=24.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ...|..+.||.|+|||++.+.++..+.
T Consensus       644 ~~~~~~l~GpaGtGKTe~vk~LA~~lg  670 (2695)
T 4akg_A          644 QKYGGCFFGPAGTGKTETVKAFGQNLG  670 (2695)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred             hCCCCcccCCCCCCcHHHHHHHHHHhC
Confidence            458999999999999999999999884

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=95.11  E-value=0.012  Score=52.81  Aligned_cols=25  Identities=24%  Similarity=0.325  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      +.-++|.|++||||||+.+.|+..+
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            5679999999999999999998755

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=95.07  E-value=0.025  Score=67.14  Aligned_cols=28  Identities=32%  Similarity=0.362  Sum_probs=24.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .+++..+.|+|++|+|||||+..++..+
T Consensus       729 l~~G~lVlI~G~PG~GKTtLal~lA~~a  756 (1706)
T 3cmw_A          729 LPMGRIVEIYGPESSGKTTLTLQVIAAA  756 (1706)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence            4577889999999999999999987755

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=95.04  E-value=0.013  Score=52.74  Aligned_cols=25  Identities=28%  Similarity=0.220  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .+-+.|.|++|+|||||++.+.+.+
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            4678999999999999999998865

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=95.04  E-value=0.016  Score=53.96  Aligned_cols=27  Identities=22%  Similarity=0.347  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ..|+-+.|+||+||||||..+.|+..+
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            467889999999999999999998754

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=95.02  E-value=0.11  Score=53.36  Aligned_cols=28  Identities=11%  Similarity=-0.094  Sum_probs=22.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .+++.-+.|.|++|+|||||+.-++...
T Consensus       197 l~~G~l~ii~G~pg~GKT~lal~ia~~~  224 (444)
T 2q6t_A          197 LGPGSLNIIAARPAMGKTAFALTIAQNA  224 (444)
T ss_dssp             CCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3456678899999999999998887654

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=95.01  E-value=0.017  Score=54.09  Aligned_cols=27  Identities=26%  Similarity=0.320  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .+.-+.|.|++||||||+++.|...+.
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            456788999999999999999998775

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=95.00  E-value=0.021  Score=67.67  Aligned_cols=78  Identities=15%  Similarity=0.259  Sum_probs=53.2

Q ss_pred             CCEEEEechh-----------------hhCCCCChhHHHHHHh------cCCEEEEcCCCCCCcCC-ch----------h
Q 012882          295 NGVARFTFEY-----------------LCGRPVGAADYIAVAH------NYHTVFITNIPVMSMRI-RD----------K  340 (454)
Q Consensus       295 ~~va~f~F~e-----------------LC~~~lg~aDYl~la~------~f~ti~i~~VP~l~~~~-~~----------~  340 (454)
                      +.+|+++|++                 ||.+|-..-+-|+++.      ..+.|+|+-|.-|.... -+          +
T Consensus      1460 ~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ 1539 (1706)
T 3cmw_A         1460 KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLA 1539 (1706)
T ss_dssp             CCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------CCHH
T ss_pred             CeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccchhHH
Confidence            4588999974                 4557766666676665      57899999998887642 23          6


Q ss_pred             hhhh----hhhHhhhhhcCceEEEEecCC--hhhhccC
Q 012882          341 ARRF----ITLIDELYNHHCCLFCSAASS--IDDLFQG  372 (454)
Q Consensus       341 arRF----i~lID~lYe~~~kl~~~a~~~--~~~lf~~  372 (454)
                      ||.+    .-|.+.+-.++|-+++..+..  +--.|..
T Consensus      1540 ar~m~~~lr~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 1577 (1706)
T 3cmw_A         1540 ARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN 1577 (1706)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCEEEEEECBC--------C
T ss_pred             HHHHHHHHHHHHHHHHhCCcEEEEeeccccccceecCC
Confidence            6665    667899999999999888753  3344543

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=94.98  E-value=0.012  Score=54.32  Aligned_cols=26  Identities=19%  Similarity=0.263  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .|.-+.|.|++||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            35679999999999999999998765

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=94.97  E-value=0.012  Score=53.78  Aligned_cols=22  Identities=23%  Similarity=0.300  Sum_probs=19.7

Q ss_pred             EEEEcCCCChHHHHHHHHHhCC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ++|.|++||||||+.+.|+..+
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            3 IVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999997654

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=94.96  E-value=0.015  Score=52.81  Aligned_cols=26  Identities=19%  Similarity=0.064  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .|.-+.|.|+.||||||+.+.|...+
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~~l   33 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVEAL   33 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            45779999999999999999998754

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=94.94  E-value=0.0047  Score=60.62  Aligned_cols=26  Identities=19%  Similarity=0.436  Sum_probs=23.1

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      +.+++|+||+|+|||+|++.++..++
T Consensus        45 ~~~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           45 IGGVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CceEEEECCCCccHHHHHHHHHHhCc
Confidence            45699999999999999999998764

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=94.94  E-value=0.013  Score=51.30  Aligned_cols=24  Identities=21%  Similarity=0.324  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      +-++|.|++||||||+.+.|...+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            358899999999999999998755

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=94.94  E-value=0.014  Score=54.99  Aligned_cols=26  Identities=19%  Similarity=0.187  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .|.-+.|.||+||||||+.+.|+..+
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            35679999999999999999998755

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=94.93  E-value=0.012  Score=57.47  Aligned_cols=22  Identities=23%  Similarity=0.430  Sum_probs=20.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHhC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      -+.|+|++|+|||||++.|.|.
T Consensus        10 ~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A           10 FIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4899999999999999999985

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=94.86  E-value=0.016  Score=53.21  Aligned_cols=26  Identities=19%  Similarity=0.175  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .+.-+.|.|++||||||+.+.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            35679999999999999999998755

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=94.86  E-value=0.0092  Score=61.15  Aligned_cols=24  Identities=25%  Similarity=0.304  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .-++|+|+||||||||+++|++..
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~  181 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAH  181 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCC
Confidence            348999999999999999999874

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=94.85  E-value=0.013  Score=53.50  Aligned_cols=22  Identities=27%  Similarity=0.259  Sum_probs=20.0

Q ss_pred             EEEEcCCCChHHHHHHHHHhCC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ++|.|++||||||+.+.|+..+
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            3 LVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999997755

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=94.84  E-value=0.016  Score=50.77  Aligned_cols=25  Identities=36%  Similarity=0.329  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      -+.++|.|+.||||||+.+.|+..+
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~l   31 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLAL   31 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHh
Confidence            4679999999999999999998754

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=94.83  E-value=0.014  Score=54.42  Aligned_cols=27  Identities=22%  Similarity=0.363  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .+.-+.|+|++|+|||||++.|.|...
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~~~   54 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGRKV   54 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCCCc
Confidence            345699999999999999999998653

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=94.82  E-value=0.015  Score=53.73  Aligned_cols=26  Identities=19%  Similarity=0.129  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .+.-+.|.|++||||||+.+.|+..+
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            35779999999999999999998765

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=94.80  E-value=0.013  Score=55.89  Aligned_cols=24  Identities=33%  Similarity=0.494  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .-+.|+|++|+|||||++.|.|..
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            568999999999999999999864

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=94.73  E-value=0.0075  Score=54.84  Aligned_cols=24  Identities=29%  Similarity=0.400  Sum_probs=21.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHhCCC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      -+.|.|++||||||+++.|...+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999987663

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=94.72  E-value=0.019  Score=54.00  Aligned_cols=26  Identities=19%  Similarity=0.138  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .|.-+.|.|++||||||+.+.|...+
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            57889999999999999999997654

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=94.72  E-value=0.022  Score=54.91  Aligned_cols=25  Identities=28%  Similarity=0.234  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHh
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      ..|.-++|.|++||||||+.+.|..
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3467799999999999999999984

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=94.71  E-value=0.016  Score=51.55  Aligned_cols=23  Identities=30%  Similarity=0.261  Sum_probs=20.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHhCC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      -++|.|++||||||+.+.|+..+
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~l   26 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKAL   26 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHc
Confidence            48999999999999999998754

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=94.70  E-value=0.014  Score=51.62  Aligned_cols=25  Identities=24%  Similarity=0.319  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      ...-+.|+|++|+|||||++.|.+.
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcC
Confidence            4567999999999999999999875

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=94.68  E-value=0.032  Score=52.49  Aligned_cols=36  Identities=22%  Similarity=0.329  Sum_probs=25.8

Q ss_pred             cCCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEecC
Q 012882          156 RGASILCFDEIQTVDVFAIVALSGIVSRLLSTGT-VLVATSN  196 (454)
Q Consensus       156 ~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN  196 (454)
                      .+.+++++||.|.+..     +.++++.+.+.|+ |+++..+
T Consensus        89 ~~~dvViIDEaQF~~~-----v~el~~~l~~~gi~VI~~GL~  125 (234)
T 2orv_A           89 LGVAVIGIDEGQFFPD-----IVEFCEAMANAGKTVIVAALD  125 (234)
T ss_dssp             TTCSEEEESSGGGCTT-----HHHHHHHHHHTTCEEEEECCS
T ss_pred             ccCCEEEEEchhhhhh-----HHHHHHHHHhCCCEEEEEecc
Confidence            4689999999994431     5666666666888 6666665

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=94.68  E-value=0.016  Score=51.54  Aligned_cols=23  Identities=30%  Similarity=0.280  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHhCC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      -++|.|+.||||||+.+.|...+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            37899999999999999998754

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=94.67  E-value=0.017  Score=50.40  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=20.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHhCC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      -+.|.|++||||||+.+.|...+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998754

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=94.61  E-value=0.018  Score=49.48  Aligned_cols=23  Identities=17%  Similarity=0.352  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      --+.++|+.|+|||||++.|.+.
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            45889999999999999999874

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=94.57  E-value=0.018  Score=49.86  Aligned_cols=24  Identities=38%  Similarity=0.594  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      --+.|+|++|+|||||++.|.+..
T Consensus         5 ~ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            5 YRVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEEECCCCccHHHHHHHHhcCC
Confidence            468999999999999999998743

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=94.57  E-value=0.034  Score=51.41  Aligned_cols=34  Identities=29%  Similarity=0.489  Sum_probs=24.6

Q ss_pred             hhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHH
Q 012882           28 KLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFY   64 (454)
Q Consensus        28 ~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~   64 (454)
                      .++++++.   ..+++.-+.|.|++|+|||+|+--++
T Consensus        18 ~LD~~l~G---Gl~~G~l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           18 GFDELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             TTGGGTTT---SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred             HHHHhhcC---CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            46666532   33456778999999999999976543

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=94.54  E-value=0.018  Score=49.03  Aligned_cols=23  Identities=26%  Similarity=0.291  Sum_probs=20.5

Q ss_pred             EEEEEcCCCChHHHHHHHHHhCC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      -+.++|+.|+|||||++.+.+..
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            58899999999999999998753

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=94.52  E-value=0.019  Score=48.97  Aligned_cols=23  Identities=26%  Similarity=0.356  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      --+.++|++|+|||||++.+.+.
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            35899999999999999999864

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=94.52  E-value=0.022  Score=56.13  Aligned_cols=28  Identities=21%  Similarity=0.167  Sum_probs=25.0

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ..|+-+.++|+||+||||++..|++.+.
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~  130 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYYA  130 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4577899999999999999999999775

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=94.51  E-value=0.02  Score=49.27  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      --+.++|+.|+|||||++.|.+.
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35889999999999999999874

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=94.51  E-value=0.018  Score=51.85  Aligned_cols=23  Identities=22%  Similarity=0.166  Sum_probs=21.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHhCC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      -++|.|++||||||+.+.|+..+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            68899999999999999998865

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=94.50  E-value=0.025  Score=50.18  Aligned_cols=26  Identities=23%  Similarity=0.355  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ...-+.++|+.|+|||||++.|.+..
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34579999999999999999998864

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=94.46  E-value=0.02  Score=48.94  Aligned_cols=23  Identities=26%  Similarity=0.343  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      --+.++|+.|+|||||++.+.+.
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            56899999999999999999864

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=94.46  E-value=0.023  Score=48.40  Aligned_cols=23  Identities=17%  Similarity=0.322  Sum_probs=20.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHhCC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      -+.++|+.|+|||||++.+.+..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998754

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=94.46  E-value=0.19  Score=51.53  Aligned_cols=27  Identities=26%  Similarity=0.174  Sum_probs=24.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .|+.+.++|++|+||||++..|++.+.
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~  123 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYK  123 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            578899999999999999999999775

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=94.40  E-value=0.021  Score=49.05  Aligned_cols=24  Identities=29%  Similarity=0.458  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      --+.++|+.|+|||||++.|.+..
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            458999999999999999998754

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=94.39  E-value=0.03  Score=48.69  Aligned_cols=25  Identities=32%  Similarity=0.509  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      .+.-+.|+|+.|+|||||++.|.+.
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567999999999999999999874

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=94.37  E-value=0.1  Score=51.80  Aligned_cols=36  Identities=19%  Similarity=0.101  Sum_probs=27.0

Q ss_pred             hhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           28 KLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        28 ~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .|+.+++    ...++.-+.|.|++|+|||||+.-++...
T Consensus        35 ~LD~~~g----Gl~~G~LiiIaG~pG~GKTt~al~ia~~~   70 (338)
T 4a1f_A           35 QLDNYTS----GFNKGSLVIIGARPSMGKTSLMMNMVLSA   70 (338)
T ss_dssp             HHHHHHC----SBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             HHHHHhc----CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3555554    33456778899999999999998887654

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=94.36  E-value=0.017  Score=49.67  Aligned_cols=23  Identities=35%  Similarity=0.587  Sum_probs=19.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHhCC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      -+.|+|++|+|||||++.|.+..
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~~   26 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGVE   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHcCcc
Confidence            47899999999999999997643

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.35  E-value=0.022  Score=48.89  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      --+.++|+.|+|||||++.|.+..
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Confidence            358899999999999999998643

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=94.33  E-value=0.026  Score=50.55  Aligned_cols=25  Identities=32%  Similarity=0.335  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .+-+.|.|++|||||||+..|...+
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhh
Confidence            4678999999999999999998765

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=94.33  E-value=0.022  Score=49.46  Aligned_cols=24  Identities=29%  Similarity=0.462  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      --+.++|+.|+|||||++.+.+..
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~~~~   31 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYVTNK   31 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            458999999999999999998743

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=94.33  E-value=0.022  Score=48.76  Aligned_cols=23  Identities=30%  Similarity=0.390  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      --+.++|+.|+|||||++.|.+.
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35889999999999999999874

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=94.32  E-value=0.026  Score=53.62  Aligned_cols=25  Identities=20%  Similarity=0.127  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      +.-+.|.|++||||||+.+.|...+
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~L   28 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKIL   28 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            5678999999999999999998753

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=94.31  E-value=0.023  Score=48.95  Aligned_cols=23  Identities=26%  Similarity=0.231  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      --+.++|+.|+|||||++.+.+.
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            45899999999999999999864

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=94.29  E-value=0.022  Score=48.98  Aligned_cols=24  Identities=29%  Similarity=0.480  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      --+.++|+.|+|||||++.|.+.-
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCC
Confidence            458899999999999999998743

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=94.28  E-value=0.028  Score=48.85  Aligned_cols=24  Identities=29%  Similarity=0.391  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      ..-+.++|+.|+|||||++.|.+.
T Consensus         9 ~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            9 THKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            456999999999999999999875

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=94.26  E-value=0.14  Score=52.61  Aligned_cols=25  Identities=24%  Similarity=0.177  Sum_probs=20.8

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHh
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      ...+-..+.|+.||||||++.-++.
T Consensus       159 ~~~~v~~I~G~aGsGKTt~I~~~~~  183 (446)
T 3vkw_A          159 SSAKVVLVDGVPGCGKTKEILSRVN  183 (446)
T ss_dssp             CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred             ccccEEEEEcCCCCCHHHHHHHHhc
Confidence            3457788999999999999987754

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=94.25  E-value=0.024  Score=49.34  Aligned_cols=25  Identities=28%  Similarity=0.449  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .--+.++|+.|+|||||++.+.+..
T Consensus         8 ~~~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A            8 ILKVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCc
Confidence            4568999999999999999998743

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=94.23  E-value=0.024  Score=48.90  Aligned_cols=22  Identities=36%  Similarity=0.567  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHhC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      -+.++|++|+|||||++.|.+.
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~   25 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGL   25 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            3789999999999999999764

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=94.22  E-value=0.029  Score=52.15  Aligned_cols=26  Identities=19%  Similarity=0.111  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .+.-+.|.|++||||||+.+.|+..+
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            35679999999999999999998765

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=94.22  E-value=0.034  Score=48.96  Aligned_cols=25  Identities=16%  Similarity=0.381  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ..-+.|+|+.|+|||||++.|.+.-
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           23 KGEVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCc
Confidence            3568999999999999999998753

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=94.19  E-value=0.027  Score=50.71  Aligned_cols=24  Identities=21%  Similarity=0.304  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHh
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      .++|+.|.|++|+|||||+-.|..
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            479999999999999999998865

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=94.18  E-value=0.03  Score=49.58  Aligned_cols=25  Identities=16%  Similarity=0.279  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      ...-+.|+|+.|+|||||++.|.+.
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3567999999999999999999875

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=94.18  E-value=0.027  Score=53.12  Aligned_cols=27  Identities=19%  Similarity=0.162  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .+.-++|.|++||||||+.+.|...+.
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~~lg   47 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQLLG   47 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            467799999999999999999987553

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=94.17  E-value=0.025  Score=48.50  Aligned_cols=23  Identities=30%  Similarity=0.343  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      --+.++|+.|+|||||++.|.+.
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            45899999999999999999863

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=94.15  E-value=0.13  Score=50.77  Aligned_cols=37  Identities=16%  Similarity=-0.057  Sum_probs=22.9

Q ss_pred             hhhhhhccCCCC-CCCCCeEEEEEcCCCChHHHHHHHHH
Q 012882           27 RKLDSLVGRCPT-APPAPKGLYLYGNVGSGKTMLMDMFY   64 (454)
Q Consensus        27 ~~~~~~~~~~~~-~~~~p~Gl~L~GpnGsGKTTLm~ll~   64 (454)
                      ..|+.+++-... ..+++ -+.|+||+|+|||||+--++
T Consensus        12 ~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~   49 (333)
T 3io5_A           12 PMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMV   49 (333)
T ss_dssp             HHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHH
Confidence            457777651100 22233 36788999999999955443

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=94.15  E-value=0.027  Score=55.82  Aligned_cols=28  Identities=21%  Similarity=0.237  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ..+.-++|+|++|+|||||++.|++.+.
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~   81 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLLI   81 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3567799999999999999999988653

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=94.12  E-value=0.027  Score=56.44  Aligned_cols=25  Identities=24%  Similarity=0.355  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ...++|+|++||||||+.++|++.+
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~~l   48 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQII   48 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHHHh
Confidence            3569999999999999999998865

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=94.12  E-value=0.023  Score=58.36  Aligned_cols=25  Identities=16%  Similarity=0.290  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      +.-++|+|++|+|||||++.|.|..
T Consensus       180 ~~kvaivG~~gvGKSTLln~l~g~~  204 (439)
T 1mky_A          180 AIKVAIVGRPNVGKSTLFNAILNKE  204 (439)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCc
Confidence            4579999999999999999999864

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.11  E-value=0.028  Score=48.99  Aligned_cols=25  Identities=32%  Similarity=0.448  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .--+.|+|+.|+|||||++.|.+..
T Consensus        10 ~~~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           10 AFKVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCC
Confidence            4568999999999999999998743

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=94.11  E-value=0.022  Score=49.56  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      .--+.++|++|+|||||++.|.+.
T Consensus         9 ~~~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B            9 LFKLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            356899999999999999999864

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=94.10  E-value=0.025  Score=51.47  Aligned_cols=24  Identities=17%  Similarity=0.393  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      ..-++|.|+.||||||+.+.|...
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            466999999999999999999875

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=94.10  E-value=0.025  Score=52.32  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHhCC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      -+.|.|++||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999997754

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=94.06  E-value=0.027  Score=49.53  Aligned_cols=24  Identities=21%  Similarity=0.338  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      .--+.|+|+.|+|||||++.|.+.
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            356899999999999999999874

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=94.03  E-value=0.028  Score=49.70  Aligned_cols=24  Identities=17%  Similarity=0.169  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      +--+.++|+.|+|||||++.|.+.
T Consensus         7 ~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            7 SYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            456899999999999999999875

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=94.03  E-value=0.025  Score=51.73  Aligned_cols=22  Identities=18%  Similarity=0.220  Sum_probs=19.8

Q ss_pred             EEEEcCCCChHHHHHHHHHhCC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      +.|.|++||||||+.+.|+..+
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            3 IILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999998754

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=94.01  E-value=0.026  Score=54.28  Aligned_cols=23  Identities=39%  Similarity=0.592  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      .-+.|+|++|+|||||++.|.|.
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHCC
Confidence            45899999999999999999985

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=94.00  E-value=0.031  Score=53.81  Aligned_cols=25  Identities=28%  Similarity=0.329  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      |+-+.|.|++||||||+.+.|....
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~   26 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKN   26 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhC
Confidence            4668999999999999999998743

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=93.98  E-value=0.028  Score=49.91  Aligned_cols=24  Identities=33%  Similarity=0.433  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      --+.|+|++|+|||||++.|.+..
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            468999999999999999998743

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=93.98  E-value=0.029  Score=49.22  Aligned_cols=24  Identities=25%  Similarity=0.256  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      --+.++|+.|+|||||++.|.+..
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCC
Confidence            358999999999999999998743

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=93.96  E-value=0.03  Score=48.62  Aligned_cols=24  Identities=29%  Similarity=0.355  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      .--+.++|+.|+|||||++.|.+.
T Consensus         6 ~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            6 QLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhC
Confidence            345899999999999999999864

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=93.94  E-value=0.03  Score=47.98  Aligned_cols=20  Identities=20%  Similarity=0.258  Sum_probs=18.6

Q ss_pred             EEEEcCCCChHHHHHHHHHh
Q 012882           46 LYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g   65 (454)
                      +.++|+.|+|||||++.+.+
T Consensus         3 i~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            78999999999999999975

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=93.93  E-value=0.026  Score=49.67  Aligned_cols=23  Identities=22%  Similarity=0.366  Sum_probs=20.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHhCC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      -+.++|++|+|||||++.|.+..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcC
Confidence            37899999999999999998753

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=93.91  E-value=0.031  Score=51.51  Aligned_cols=26  Identities=19%  Similarity=0.211  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .++++.|.||+|+|||||...|....
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence            47899999999999999999997654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=93.91  E-value=0.025  Score=56.86  Aligned_cols=24  Identities=33%  Similarity=0.465  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      +-+.|+|++|+|||||++.|.+..
T Consensus       180 ~~V~lvG~~naGKSTLln~L~~~~  203 (364)
T 2qtf_A          180 PSIGIVGYTNSGKTSLFNSLTGLT  203 (364)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHCC-
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCC
Confidence            458899999999999999999864

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=93.89  E-value=0.023  Score=56.97  Aligned_cols=24  Identities=25%  Similarity=0.451  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      --+.|+|++|+|||||++.|++..
T Consensus        38 ~~I~vvG~~g~GKSTLln~L~~~~   61 (361)
T 2qag_A           38 FTLMVVGESGLGKSTLINSLFLTD   61 (361)
T ss_dssp             ECEEECCCTTSCHHHHHHHHTTCC
T ss_pred             EEEEEEcCCCCCHHHHHHHHhCCC
Confidence            447999999999999999998753

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=93.88  E-value=0.028  Score=50.15  Aligned_cols=24  Identities=29%  Similarity=0.391  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      +.-+.++|++|+|||||++.+.+.
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            346899999999999999999873

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=93.87  E-value=0.031  Score=48.46  Aligned_cols=24  Identities=25%  Similarity=0.467  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      --+.++|+.|+|||||++.|.+..
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            569999999999999999998743

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=93.87  E-value=0.029  Score=48.58  Aligned_cols=23  Identities=30%  Similarity=0.351  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      --+.++|+.|+|||||++.|.+.
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45899999999999999999864

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=93.86  E-value=0.021  Score=51.51  Aligned_cols=22  Identities=32%  Similarity=0.427  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHh
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      .-+.|+|++|+|||||++.+.+
T Consensus        26 ~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           26 GKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            4589999999999999999976

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=93.82  E-value=0.035  Score=48.93  Aligned_cols=25  Identities=28%  Similarity=0.329  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      --+.|+|+.|+|||||++.+.+...
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhcc
Confidence            4589999999999999999988664

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=93.80  E-value=0.042  Score=47.28  Aligned_cols=25  Identities=20%  Similarity=0.279  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      .+--+.++|+.|+|||||++.|.+.
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            3466999999999999999999763

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=93.79  E-value=0.032  Score=48.70  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      .--+.|+|+.|+|||||++.|.+.
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Confidence            356999999999999999999864

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=93.76  E-value=0.033  Score=49.24  Aligned_cols=23  Identities=26%  Similarity=0.265  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      --+.++|+.|+|||||++.|.+.
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            35899999999999999999874

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=93.76  E-value=0.015  Score=61.05  Aligned_cols=45  Identities=7%  Similarity=-0.035  Sum_probs=29.5

Q ss_pred             HHHhcC--CEEEEcCCCCCCcCCchhhhhhhhhHhhhhhcCceEEEEecC
Q 012882          317 AVAHNY--HTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLFCSAAS  364 (454)
Q Consensus       317 ~la~~f--~ti~i~~VP~l~~~~~~~arRFi~lID~lYe~~~kl~~~a~~  364 (454)
                      +|+..-  .+++++. |.-++ +...+.++..+|..+-+ ++.++|.+..
T Consensus       411 ~l~~~~~~~~lilDE-p~~gl-d~~~~~~i~~~l~~~~~-~~~vi~itH~  457 (517)
T 4ad8_A          411 STVLGADTPSVVFDE-VDAGI-GGAAAIAVAEQLSRLAD-TRQVLVVTHL  457 (517)
T ss_dssp             HHHHCCCSSEEEECS-CSSSC-CTHHHHHHHHHHHHHHH-HSEEEEECCC
T ss_pred             HHHhCCCCCEEEEeC-CcCCC-CHHHHHHHHHHHHHHhC-CCEEEEEecC
Confidence            455566  7777764 44344 45677888999988877 5666665544

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=93.75  E-value=0.039  Score=54.57  Aligned_cols=27  Identities=30%  Similarity=0.429  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .++.+.|+||+|||||||...|+..+.
T Consensus         4 m~~~i~i~GptGsGKTtla~~La~~l~   30 (323)
T 3crm_A            4 LPPAIFLMGPTAAGKTDLAMALADALP   30 (323)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            356899999999999999999998764

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=93.75  E-value=0.036  Score=50.91  Aligned_cols=25  Identities=28%  Similarity=0.349  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      +.-+.|.|++||||||+.+.|+..+
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3568999999999999999998755

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=93.74  E-value=0.032  Score=48.97  Aligned_cols=25  Identities=28%  Similarity=0.491  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .--+.|+|+.|+|||||++.|.+..
T Consensus        10 ~~ki~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A           10 LFKFLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC
Confidence            3568999999999999999998643

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=93.70  E-value=0.03  Score=49.70  Aligned_cols=25  Identities=24%  Similarity=0.271  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      .+.-|.|+|+.|+|||||++.|.+.
T Consensus        16 ~~~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           16 TKLQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            3456999999999999999999874

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=93.69  E-value=0.035  Score=48.38  Aligned_cols=23  Identities=39%  Similarity=0.575  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      --+.++|+.|+|||||++.|.+.
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            45899999999999999999874

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.64  E-value=0.027  Score=49.32  Aligned_cols=24  Identities=21%  Similarity=0.260  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHh
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      .+--+.++|++|+|||||++.+.+
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            457799999999999999999874

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=93.63  E-value=0.034  Score=51.20  Aligned_cols=22  Identities=23%  Similarity=0.303  Sum_probs=19.8

Q ss_pred             EEEEcCCCChHHHHHHHHHhCC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      +.|+||+||||+|..+.|+...
T Consensus         3 Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            3 LVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6799999999999999998754

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.62  E-value=0.044  Score=49.66  Aligned_cols=26  Identities=23%  Similarity=0.355  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ...-+.|+|++|+|||||++.|.+..
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34568999999999999999998854

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=93.62  E-value=0.085  Score=56.55  Aligned_cols=24  Identities=25%  Similarity=0.328  Sum_probs=19.6

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      .+-+.+.|++|+||||++..+...
T Consensus       164 ~~~~vi~G~pGTGKTt~l~~ll~~  187 (608)
T 1w36_D          164 RRISVISGGPGTGKTTTVAKLLAA  187 (608)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHHH
Confidence            356889999999999998876543

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=93.61  E-value=0.034  Score=49.04  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      .--+.++|++|+|||||++.|.+.
T Consensus         7 ~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            7 KCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHhcC
Confidence            356899999999999999999874

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=93.61  E-value=0.036  Score=49.06  Aligned_cols=24  Identities=29%  Similarity=0.354  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      --+.|+|+.|+|||||++.|.+..
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            468999999999999999998743

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=93.59  E-value=0.036  Score=49.48  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      .--+.|+|+.|+|||||++.|.+.
T Consensus        14 ~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           14 LHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            356999999999999999999864

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=93.53  E-value=0.038  Score=49.44  Aligned_cols=25  Identities=28%  Similarity=0.485  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .--+.|+|+.|+|||||++.|.+..
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A            8 LLKVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC
Confidence            4568999999999999999998753

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=93.53  E-value=0.038  Score=48.27  Aligned_cols=23  Identities=22%  Similarity=0.215  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      --+.++|++|+|||||++.|.+.
T Consensus         6 ~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            6 IKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            35899999999999999999863

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=93.51  E-value=0.037  Score=49.27  Aligned_cols=24  Identities=25%  Similarity=0.421  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      --+.|+|+.|+|||||++.|.+..
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            458999999999999999998743

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=93.48  E-value=0.36  Score=50.77  Aligned_cols=24  Identities=29%  Similarity=0.430  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHh
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      .++.+.|+|+.|.|||||+..++.
T Consensus       151 ~~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          151 DSFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            468899999999999999999995

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=93.48  E-value=0.055  Score=49.74  Aligned_cols=25  Identities=28%  Similarity=0.392  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      ...-+.|+|+.|+|||||++.|.+.
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567999999999999999999874

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=93.48  E-value=0.039  Score=49.00  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      --+.|+|++|+|||||++.+.+.
T Consensus        21 ~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           21 LKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            35999999999999999877653

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=93.43  E-value=0.04  Score=48.75  Aligned_cols=24  Identities=38%  Similarity=0.486  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      --+.|+|+.|+|||||++.|.+..
T Consensus        17 ~ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           17 FKLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            468999999999999999998743

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=93.37  E-value=0.04  Score=48.87  Aligned_cols=24  Identities=25%  Similarity=0.383  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      .--+.|+|+.|+|||||++.|.+.
T Consensus         8 ~~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            8 DYRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCcHHHHHHHHHcC
Confidence            456999999999999999999874

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=93.37  E-value=0.042  Score=49.16  Aligned_cols=24  Identities=21%  Similarity=0.321  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      --+.|+|+.|+|||||++.|.+..
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            468999999999999999998743

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=93.36  E-value=0.052  Score=47.49  Aligned_cols=24  Identities=29%  Similarity=0.439  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      .--+.|+|+.|+|||||++.|.+.
T Consensus        18 ~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           18 TYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            345899999999999999999874

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=93.35  E-value=0.042  Score=49.26  Aligned_cols=22  Identities=36%  Similarity=0.646  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHh
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      --+.|+|++|+|||||++.|.+
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            4589999999999999999986

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=93.34  E-value=0.043  Score=48.55  Aligned_cols=23  Identities=26%  Similarity=0.346  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      --+.|+|+.|+|||||++.|.+.
T Consensus        21 ~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           21 FKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            45999999999999999999863

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=93.31  E-value=0.039  Score=48.52  Aligned_cols=26  Identities=27%  Similarity=0.429  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ..--+.++|++|+|||||++.+.+..
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            45679999999999999999998643

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=93.30  E-value=0.044  Score=47.78  Aligned_cols=25  Identities=24%  Similarity=0.159  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .--+.++|+.|+|||||++.+.+..
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~~~   32 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTSNT   32 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCC
Confidence            4568999999999999999998643

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=93.27  E-value=0.044  Score=48.60  Aligned_cols=23  Identities=30%  Similarity=0.319  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      --+.|+|+.|+|||||++.|.+.
T Consensus        23 ~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           23 MELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHcC
Confidence            34899999999999999999864

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=93.27  E-value=0.042  Score=48.79  Aligned_cols=24  Identities=29%  Similarity=0.351  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      --+.|+|+.|+|||||++.|.+..
T Consensus        24 ~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           24 FKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCcCHHHHHHHHhcCC
Confidence            458999999999999999998744

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=93.24  E-value=0.045  Score=52.00  Aligned_cols=22  Identities=36%  Similarity=0.478  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHhC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      -+.|+|.+|+|||||++.|.|.
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4789999999999999999985

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=93.23  E-value=0.045  Score=48.60  Aligned_cols=24  Identities=25%  Similarity=0.393  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      --+.|+|+.|+|||||++.|.+..
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           22 FKYIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            348999999999999999998743

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=93.22  E-value=0.043  Score=49.24  Aligned_cols=25  Identities=24%  Similarity=0.286  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .--+.|+|+.|+|||||++.|.+..
T Consensus        24 ~~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           24 YRKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCC
Confidence            3558999999999999999998754

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=93.22  E-value=0.044  Score=52.07  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      .-+.|+|.+|+|||||++.|.|.
T Consensus         6 ~kI~lvG~~nvGKTsL~n~l~g~   28 (258)
T 3a1s_A            6 VKVALAGCPNVGKTSLFNALTGT   28 (258)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHCC
Confidence            45899999999999999999884

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=93.18  E-value=0.061  Score=53.52  Aligned_cols=26  Identities=19%  Similarity=0.273  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .+.-+.++|++|+|||||++.|.+..
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~  191 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAK  191 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45679999999999999999998854

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=93.18  E-value=0.038  Score=49.23  Aligned_cols=23  Identities=35%  Similarity=0.527  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      --+.|+|+.|+|||||++.|.+.
T Consensus        27 ~ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           27 LQVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHCC-
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            34899999999999999999764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=93.16  E-value=0.045  Score=47.81  Aligned_cols=22  Identities=23%  Similarity=0.323  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHh
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      .-+.|+|+.|+|||||++.|.+
T Consensus         7 ~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            7 RKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHHHc
Confidence            4589999999999999999985

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=93.15  E-value=0.085  Score=52.87  Aligned_cols=54  Identities=19%  Similarity=0.177  Sum_probs=39.1

Q ss_pred             CCcEEEeeCCCCCCHHHHHHHHHHHHHHHhC----------CcEEEEecCCCccchhcCCchhh
Q 012882          157 GASILCFDEIQTVDVFAIVALSGIVSRLLST----------GTVLVATSNRAPWDLNQDGMQRE  210 (454)
Q Consensus       157 ~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~----------G~vlV~ThN~~P~dLy~~~l~r~  210 (454)
                      +--.|+|||+.-++...+..|.+.|..-.-.          .+-+|+++|..+.++...|..|+
T Consensus       222 ~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~  285 (368)
T 3dzd_A          222 DQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFRE  285 (368)
T ss_dssp             TTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCH
T ss_pred             CCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccH
Confidence            3468999999999998888888877653100          23488888898888777665554

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=93.12  E-value=0.045  Score=49.14  Aligned_cols=23  Identities=39%  Similarity=0.498  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      --+.|+|+.|+|||||++.|.+.
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            9 FKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999874

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=93.12  E-value=0.055  Score=50.86  Aligned_cols=26  Identities=19%  Similarity=0.313  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .+.-+.|+|++|+|||||++.|.+..
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCC
Confidence            45679999999999999999998753

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=93.12  E-value=0.048  Score=48.58  Aligned_cols=25  Identities=32%  Similarity=0.514  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      ..--+.|+|+.|+|||||++.|.+.
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3466999999999999999999874

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=93.11  E-value=0.047  Score=48.21  Aligned_cols=25  Identities=20%  Similarity=0.250  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      ..--+.++|+.|+|||||++.|.+.
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            3467999999999999999999853

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=93.09  E-value=0.048  Score=48.81  Aligned_cols=26  Identities=15%  Similarity=0.240  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ..--+.|+|+.|+|||||++.|.+..
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence            34679999999999999999998754

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=93.09  E-value=0.048  Score=48.43  Aligned_cols=24  Identities=25%  Similarity=0.308  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      --+.|+|+.|+|||||++.|.+..
T Consensus        24 ~ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           24 LKIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            459999999999999999998743

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=93.09  E-value=0.049  Score=48.05  Aligned_cols=24  Identities=29%  Similarity=0.448  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      --+.|+|+.|+|||||++.|.+..
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            469999999999999999998743

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=93.07  E-value=0.046  Score=49.13  Aligned_cols=24  Identities=25%  Similarity=0.472  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      .--+.|+|+.|+|||||++.|.+.
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           25 LFKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            356899999999999999999864

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=93.06  E-value=0.034  Score=50.01  Aligned_cols=22  Identities=36%  Similarity=0.536  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHh
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      --+.|+|++|+|||||++.|.+
T Consensus        24 ~ki~vvG~~~vGKSsLi~~l~~   45 (195)
T 3cbq_A           24 FKVMLVGESGVGKSTLAGTFGG   45 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHTCC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4589999999999999999965

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.05  E-value=0.049  Score=48.95  Aligned_cols=25  Identities=28%  Similarity=0.440  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      ..--+.|+|+.|+|||||++.|.+.
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3456999999999999999999864

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=93.02  E-value=0.047  Score=49.44  Aligned_cols=23  Identities=39%  Similarity=0.527  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      --+.|+|++|+|||||++.|.+.
T Consensus        27 ~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           27 FKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            46899999999999999998764

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=93.01  E-value=0.039  Score=48.08  Aligned_cols=23  Identities=30%  Similarity=0.440  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      --+.++|+.|+|||||++.|.+.
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            45899999999999999999874

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=92.95  E-value=0.045  Score=54.47  Aligned_cols=22  Identities=23%  Similarity=0.483  Sum_probs=20.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHhC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      -+.|+|++|+|||||++.|.|.
T Consensus        36 ~I~vvG~~~sGKSSLln~l~g~   57 (360)
T 3t34_A           36 AIAVVGGQSSGKSSVLESIVGK   57 (360)
T ss_dssp             EEEEECBTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            7899999999999999999993

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=92.95  E-value=0.054  Score=50.48  Aligned_cols=26  Identities=23%  Similarity=0.505  Sum_probs=23.1

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      |+-+.|.|+.||||||+++.|+..++
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            56789999999999999999998764

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=92.95  E-value=0.053  Score=48.12  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      --+.|+|+.|+|||||++.|.+.
T Consensus        22 ~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           22 VNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCcHHHHHHHHHhC
Confidence            34899999999999999988764

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=92.93  E-value=0.041  Score=50.02  Aligned_cols=26  Identities=12%  Similarity=0.308  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ...-+.|+|..|+|||||++.|.+.-
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            34668999999999999999998753

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=92.91  E-value=0.052  Score=49.13  Aligned_cols=24  Identities=25%  Similarity=0.391  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      --+.|+|+.|+|||||++.|.+..
T Consensus        26 ~ki~vvG~~~~GKSsLi~~l~~~~   49 (217)
T 2f7s_A           26 IKLLALGDSGVGKTTFLYRYTDNK   49 (217)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCSC
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCC
Confidence            458999999999999999998753

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=92.90  E-value=0.044  Score=52.33  Aligned_cols=22  Identities=27%  Similarity=0.542  Sum_probs=19.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHhC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      -+.|+|.+|+|||||++.|++.
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~~   31 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFLT   31 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3899999999999999998764

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=92.87  E-value=0.037  Score=49.01  Aligned_cols=25  Identities=20%  Similarity=0.238  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .--+.|+|+.|+|||||++.|.+..
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           21 EVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCC
Confidence            3459999999999999999998643

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=92.85  E-value=0.051  Score=52.03  Aligned_cols=24  Identities=38%  Similarity=0.504  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      --+.|+|.+|+|||||++.|.|..
T Consensus         4 ~~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            4 LTIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999998853

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=92.82  E-value=0.05  Score=55.27  Aligned_cols=25  Identities=12%  Similarity=0.258  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      .+.-++|+|++|+|||||+++|.+.
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCC
Confidence            3455899999999999999999986

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=92.82  E-value=0.068  Score=54.50  Aligned_cols=27  Identities=22%  Similarity=0.409  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ..|.-+.|.|++||||||+.+.|+..+
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            356779999999999999999997654

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=92.81  E-value=0.053  Score=49.45  Aligned_cols=25  Identities=16%  Similarity=0.220  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      |.-++|.|++||||||+.+.|...+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            3568999999999999999998865

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=92.81  E-value=0.056  Score=47.48  Aligned_cols=23  Identities=22%  Similarity=0.281  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      --+.++|+.|+|||||++.|.+.
T Consensus        22 ~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           22 HKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            45999999999999999999864

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.80  E-value=0.054  Score=48.85  Aligned_cols=25  Identities=32%  Similarity=0.408  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ..-+.++|+.|+|||||++.|.+..
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~~   49 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSKDE   49 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred             CcEEEEECcCCCCHHHHHHHHhcCC
Confidence            3569999999999999999998743

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=92.78  E-value=0.054  Score=49.18  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      --+.|+|+.|+|||||++.|.+.
T Consensus        29 ~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           29 CKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            45899999999999999999875

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=92.76  E-value=0.068  Score=48.60  Aligned_cols=26  Identities=27%  Similarity=0.492  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ...-+.|+|..|+|||||++.|.+..
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            34679999999999999999998764

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=92.69  E-value=0.07  Score=47.58  Aligned_cols=25  Identities=24%  Similarity=0.193  Sum_probs=20.8

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      ..--+.|+|+.|+|||||++.|.+.
T Consensus        19 ~~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           19 RGVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            4466999999999999999999863

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=92.67  E-value=0.063  Score=52.80  Aligned_cols=24  Identities=21%  Similarity=0.250  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHh
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      .++|+.|.|++|+||||++..+.+
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHh
Confidence            378999999999999999999876

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=92.66  E-value=0.06  Score=48.63  Aligned_cols=24  Identities=25%  Similarity=0.405  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      ..-+.|+|+.|+|||||++.|.+.
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            356899999999999999999864

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=92.63  E-value=0.1  Score=50.43  Aligned_cols=25  Identities=20%  Similarity=0.375  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ..-+.++|..|+|||||++.|.|.-
T Consensus        24 ~~~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           24 LPQIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHCCC
Confidence            3469999999999999999999853

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=92.62  E-value=0.071  Score=54.07  Aligned_cols=28  Identities=18%  Similarity=0.116  Sum_probs=24.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ...++-+.|+||+|+|||||+.+|+..+
T Consensus       171 i~rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          171 IGRGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             CBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             ecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence            3457789999999999999999998754

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=92.62  E-value=0.058  Score=49.06  Aligned_cols=23  Identities=35%  Similarity=0.504  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      --+.++|+.|+|||||++.|.+.
T Consensus        35 ~ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           35 VKVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            46999999999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	454
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.82
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.82
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.82
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.81
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.81
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.8
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.8
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.8
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.79
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.79
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.79
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.78
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.69
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.68
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.68
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.68
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.65
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.64
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.64
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.6
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	98.89
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.89
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.84
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	98.7
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	98.65
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	98.6
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.57
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	98.52
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.51
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	98.46
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	98.44
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.39
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	98.27
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	98.24
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	98.19
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.95
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.94
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.93
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	97.83
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.78
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	97.72
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.58
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.48
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	97.39
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	97.2
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.1
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.0
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.99
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.99
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	96.88
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.85
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.81
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	96.79
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.79
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.75
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.74
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.73
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.72
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.62
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.61
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.56
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.55
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.48
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.47
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.43
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.39
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.38
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.36
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.36
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.29
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.22
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.22
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.17
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.15
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.11
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.1
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.07
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.02
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.0
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	95.99
d1ls1a2	207	GTPase domain of the signal sequence recognition p	95.99
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	95.98
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	95.93
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.89
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	95.89
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.88
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.83
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	95.82
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.82
d2qy9a2	211	GTPase domain of the signal recognition particle r	95.82
d1vmaa2	213	GTPase domain of the signal recognition particle r	95.79
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	95.78
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	95.75
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	95.74
d1j8yf2	211	GTPase domain of the signal sequence recognition p	95.69
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.63
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	95.6
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.56
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.54
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	95.52
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	95.51
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.47
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	95.43
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.41
d1okkd2	207	GTPase domain of the signal recognition particle r	95.41
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	95.37
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.29
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.27
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	95.26
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	95.24
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	95.23
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	95.21
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	95.21
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.17
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	95.16
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.16
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.16
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	95.15
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.12
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.09
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.08
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	95.06
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	95.04
d2fh5b1	207	Signal recognition particle receptor beta-subunit	94.99
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	94.95
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	94.94
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	94.87
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	94.84
d1nrjb_	209	Signal recognition particle receptor beta-subunit	94.79
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	94.75
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	94.7
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.64
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	94.53
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	94.5
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	94.46
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	94.3
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.28
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	94.26
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.12
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	94.12
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	94.04
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	93.94
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	93.89
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	93.88
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.86
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	93.79
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	93.79
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	93.79
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	93.78
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	93.77
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	93.76
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	93.69
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	93.69
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	93.62
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	93.57
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	93.5
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	93.5
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	93.46
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	93.45
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	93.44
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.39
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	93.35
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	93.33
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	93.32
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.28
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	93.28
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	93.26
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	93.21
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	93.18
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	93.15
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	93.14
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	93.11
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	93.09
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	93.06
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	93.06
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	93.02
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	92.9
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	92.86
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	92.83
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	92.78
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	92.76
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	92.75
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	92.72
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	92.62
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	92.62
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	92.54
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	92.47
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	92.41
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	92.36
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	92.31
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	92.3
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	92.19
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	92.18
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	92.15
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	92.04
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	92.01
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	92.0
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	91.97
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	91.96
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	91.95
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	91.95
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	91.82
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	91.79
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	91.78
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	91.73
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	91.66
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	91.45
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	91.42
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	91.28
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	91.25
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	91.25
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	91.15
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	91.12
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	91.05
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	90.98
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	90.95
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	90.86
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	90.8
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	90.75
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	90.7
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	90.37
d1tuea_	205	Replication protein E1 helicase domain {Human papi	90.24
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	90.03
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	89.85
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	89.81
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	89.75
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	89.63
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	89.08
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	88.87
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	88.65
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	88.53
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	88.47
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	88.45
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	88.15
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	88.14
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	88.08
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	86.99
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	86.83
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	86.58
d1xpua3	289	Transcription termination factor Rho, ATPase domai	86.41
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	85.51
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	85.38
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	85.36
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	85.31
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	85.28
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	85.24
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	85.08
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	85.07
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	84.44
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	84.37
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	84.36
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	84.24
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	83.8
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	83.01
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	82.94
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	81.72
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	81.66
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	81.4
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	80.85

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.82  E-value=1e-21  Score=185.56  Aligned_cols=176  Identities=18%  Similarity=0.199  Sum_probs=118.0

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhccccC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWITN  113 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~  113 (454)
                      .+.++-++|+||||||||||+++++|..+|   ..+.|.+.+..    ....+.++++.|+  +.+.+|+.+++......
T Consensus        29 v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p---~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~  105 (239)
T d1v43a3          29 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEP---TEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKI  105 (239)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC-
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHHcCCCC---CCCEEEEcceecccCCcccceEEEEeechhhcccchHHHHHHHHHHH
Confidence            356788999999999999999999999975   34566665421    1223456777776  56678999988433222


Q ss_pred             CCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882          114 LPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV  181 (454)
Q Consensus       114 ~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll  181 (454)
                      ...+.    .++++++..+++...      ....+..+++++       +||+.+|+||+||||+ +||+..+..+.+++
T Consensus       106 ~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll  179 (239)
T d1v43a3         106 KKFPKDEIDKRVRWAAELLQIEEL------LNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEI  179 (239)
T ss_dssp             -CCCHHHHHHHHHHHHHHTTCGGG------TTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhh------hcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHH
Confidence            22332    445566777766432      222344555554       6888999999999999 89999999999999


Q ss_pred             HHHHhC-Cc-EEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCchhh
Q 012882          182 SRLLST-GT-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDY  234 (454)
Q Consensus       182 ~~L~~~-G~-vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~Dy  234 (454)
                      ..+.++ |+ +|++|||.....-+++++          .+...++++..+++.+.
T Consensus       180 ~~l~~~~g~tii~vTHd~~~a~~~~dri----------~vm~~G~iv~~G~~~el  224 (239)
T d1v43a3         180 KKLQQKLKVTTIYVTHDQVEAMTMGDRI----------AVMNRGQLLQIGSPTEV  224 (239)
T ss_dssp             HHHHHHHTCEEEEEESCHHHHHHHCSEE----------EEEETTEEEEEECHHHH
T ss_pred             HHHHHhcCCeEEEEeCCHHHHHHhCCEE----------EEEECCEEEEEcCHHHH
Confidence            999754 87 999999965554455543          23345555555555444

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.82  E-value=1.2e-21  Score=183.78  Aligned_cols=174  Identities=16%  Similarity=0.160  Sum_probs=117.4

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhh--hhcccchhhhhhcccc-C
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKN--QVAEKSLRSSISGWIT-N  113 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~-~  113 (454)
                      ..+.-++|+||||||||||+++|+|..+|   ..+.|.+++.    ....++.++++.|.  +++.+|+.+++..... .
T Consensus        24 ~~Ge~~~liGpsGaGKSTll~~l~Gl~~p---~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~  100 (229)
T d3d31a2          24 ESGEYFVILGPTGAGKTLFLELIAGFHVP---DSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMK  100 (229)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSSCC---SEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCcCC---CCCEEEEccEeccccchhHhcceeeccccccCccccHHHHHHHHHhhc
Confidence            46788999999999999999999999874   3456666432    11234567777766  5566788888722111 1


Q ss_pred             CCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHH
Q 012882          114 LPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLL  185 (454)
Q Consensus       114 ~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~  185 (454)
                      .......+++++..+++...      ....+..+++++       |||+.+|+||+||||+ +||+..+..+.+++..+.
T Consensus       101 ~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~  174 (229)
T d3d31a2         101 KIKDPKRVLDTARDLKIEHL------LDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLH  174 (229)
T ss_dssp             CCCCHHHHHHHHHHTTCTTT------TTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHhcchhh------HhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHH
Confidence            12234556666666665332      222344555554       7899999999999999 899999999999999996


Q ss_pred             h-CCc-EEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCchh
Q 012882          186 S-TGT-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVD  233 (454)
Q Consensus       186 ~-~G~-vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~D  233 (454)
                      + .|. +|++|||.....-+++++          .+.+.++++..+++.+
T Consensus       175 ~~~g~tii~vtHd~~~~~~~~drv----------~vm~~G~iv~~g~~~e  214 (229)
T d3d31a2         175 KKNKLTVLHITHDQTEARIMADRI----------AVVMDGKLIQVGKPEE  214 (229)
T ss_dssp             HHTTCEEEEEESCHHHHHHHCSEE----------EEESSSCEEEEECHHH
T ss_pred             hcCCcEEEEEcCCHHHHHHhCCEE----------EEEECCEEEEEcCHHH
Confidence            5 587 999999964444444442          2334455555555444

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=2.1e-21  Score=183.47  Aligned_cols=157  Identities=13%  Similarity=0.143  Sum_probs=109.4

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh---------HHHHHHHHHHHhhh--hhcccchhhhhhc
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---------MLKINEHMHRLWKN--QVAEKSLRSSISG  109 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f---------~~~~~~~i~~~~~~--~~~~~t~~e~l~~  109 (454)
                      ..+.-++|+||||||||||+++|+|..++   ..+.+.+++.         ...+++.++++.|.  ..+.+|+.+++..
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p---~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~  105 (240)
T d3dhwc1          29 PAGQIYGVIGASGAGKSTLIRCVNLLERP---TEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVAL  105 (240)
T ss_dssp             CSSCEEEEEESTTSSHHHHHHHHTTSSCC---SEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCccc---cCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCccHHHHHHH
Confidence            46788999999999999999999999875   2355555431         12344567777766  4556788887722


Q ss_pred             --cccCCCCCh--HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHH
Q 012882          110 --WITNLPFDS--KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVAL  177 (454)
Q Consensus       110 --~~~~~~~~~--~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L  177 (454)
                        .....+...  ..+++++..+++....      ...+..+++++       |||+.+|+||++|||+ +||+..+..+
T Consensus       106 ~l~~~~~~~~~~~~~v~~~L~~vgL~~~~------~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i  179 (240)
T d3dhwc1         106 PLELDNTPKDEVKRRVTELLSLVGLGDKH------DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSI  179 (240)
T ss_dssp             HHHTTTCCTTHHHHHHHHHHHHHSTTTTT------SSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCCchhh------hCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHH
Confidence              222333333  4556677776664321      12233444444       6888999999999999 8999999999


Q ss_pred             HHHHHHHHhC-Cc-EEEEecCCCccchhcCC
Q 012882          178 SGIVSRLLST-GT-VLVATSNRAPWDLNQDG  206 (454)
Q Consensus       178 ~~ll~~L~~~-G~-vlV~ThN~~P~dLy~~~  206 (454)
                      .++|.++.++ |. +|++|||.....-++++
T Consensus       180 ~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dr  210 (240)
T d3dhwc1         180 LELLKDINRRLGLTILLITHEMDVVKRICDC  210 (240)
T ss_dssp             HHHHHHHHHHHCCEEEEEBSCHHHHHHHCSE
T ss_pred             HHHHHHHHhccCCEEEEEcCCHHHHHHhCCE
Confidence            9999999775 88 99999996444434443

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=2.1e-21  Score=182.66  Aligned_cols=157  Identities=16%  Similarity=0.124  Sum_probs=90.9

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhcc--c
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGW--I  111 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~--~  111 (454)
                      .+.+.-++|+||||||||||+++++|..++   ..+.+.+++..    ....+.++++.|.  +.+.+|+.+++...  .
T Consensus        23 i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p---~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~   99 (232)
T d2awna2          23 IHEGEFVVFVGPSGCGKSTLLRMIAGLETI---TSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKL   99 (232)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEESSSCCTTSCGGGTCEEEECSSCCC----------------
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhcCCCC---CCCEEEECCEECCCCchhhceeeeeccccccccchhHHHHHHHHHHH
Confidence            346788999999999999999999999874   24555554321    1122346666666  56677888887322  2


Q ss_pred             cCCCCCh--HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882          112 TNLPFDS--KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV  181 (454)
Q Consensus       112 ~~~~~~~--~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll  181 (454)
                      ...+...  .++++++..+++..      .....+..+++++       |||+.+|++|+||||+ +||+..+..+.++|
T Consensus       100 ~~~~~~~~~~~v~~~l~~~~l~~------~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l  173 (232)
T d2awna2         100 AGAKKEVINQRVNQVAEVLQLAH------LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEI  173 (232)
T ss_dssp             -----CHHHHHHHHHHHHC---------------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHhCCChh------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence            2233332  44566666666632      2344566777776       7999999999999999 89999999999999


Q ss_pred             HHHHh-CCc-EEEEecCCCccchhcC
Q 012882          182 SRLLS-TGT-VLVATSNRAPWDLNQD  205 (454)
Q Consensus       182 ~~L~~-~G~-vlV~ThN~~P~dLy~~  205 (454)
                      ..+.+ .|+ +|++|||.....-+++
T Consensus       174 ~~l~~~~g~tii~vTHd~~~a~~~~d  199 (232)
T d2awna2         174 SRLHKRLGRTMIYVTHDQVEAMTLAD  199 (232)
T ss_dssp             HHHHHHSCCEEEEEESCHHHHHHHCS
T ss_pred             HHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence            99965 587 9999998543333333

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.81  E-value=3.4e-21  Score=182.35  Aligned_cols=178  Identities=12%  Similarity=0.106  Sum_probs=121.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-----HHHHHHHHHHHhhh--hhcccchhhhh--hcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-----MLKINEHMHRLWKN--QVAEKSLRSSI--SGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-----~~~~~~~i~~~~~~--~~~~~t~~e~l--~~~  110 (454)
                      ..++.-++|+|||||||||||++|+|.++|   ..+++.+.+.     ....++.+++++|.  ..+.+++.+++  +..
T Consensus        25 v~~Gei~glvG~nGaGKSTLl~~l~G~~~p---~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~  101 (238)
T d1vpla_          25 IEEGEIFGLIGPNGAGKTTTLRIISTLIKP---SSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAG  101 (238)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHH
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCCEEEECcEecccChHHHHhhEeEeeeccccCCCccHHHHHHHHHH
Confidence            356788999999999999999999999975   2445554331     23445566666665  45667777776  222


Q ss_pred             ccCCCCCh--HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882          111 ITNLPFDS--KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI  180 (454)
Q Consensus       111 ~~~~~~~~--~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l  180 (454)
                      .+......  ...+.++..+++...      ....+..+++++       +||+++|+||+||||+ ++|+..+..++++
T Consensus       102 ~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~  175 (238)
T d1vpla_         102 FYASSSSEIEEMVERATEIAGLGEK------IKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKI  175 (238)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHCCGGG------GGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHhCCCHHH------HhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHH
Confidence            22222111  233344444444221      122234445444       6889999999999999 8999999999999


Q ss_pred             HHHHHhCCc-EEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCchhhhh
Q 012882          181 VSRLLSTGT-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRR  236 (454)
Q Consensus       181 l~~L~~~G~-vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~DyR~  236 (454)
                      +..+.++|. ||++||+......+++++          .+.++++++..+++.+.+.
T Consensus       176 i~~~~~~g~tii~~tH~l~~~~~~~drv----------~vl~~G~iv~~g~~~el~~  222 (238)
T d1vpla_         176 LKQASQEGLTILVSSHNMLEVEFLCDRI----------ALIHNGTIVETGTVEELKE  222 (238)
T ss_dssp             HHHHHHTTCEEEEEECCHHHHTTTCSEE----------EEEETTEEEEEEEHHHHHH
T ss_pred             HHHHHhcCCEEEEEeCCHHHHHHhCCEE----------EEEECCEEEEEcCHHHHHh
Confidence            999999988 999999976666666663          3556777777776666654

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.80  E-value=1.9e-21  Score=183.78  Aligned_cols=157  Identities=17%  Similarity=0.177  Sum_probs=105.4

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHH----------HHHHHHHHHhhh--hhcccchhhhhh
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML----------KINEHMHRLWKN--QVAEKSLRSSIS  108 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~----------~~~~~i~~~~~~--~~~~~t~~e~l~  108 (454)
                      +.+.-++|+||||||||||+++++|..+|   ..+.+.+++...          ...+.++++.|.  +.+.+|+.+++.
T Consensus        27 ~~Ge~~~liG~sGaGKSTll~~i~gl~~p---~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~  103 (240)
T d1g2912          27 KDGEFMILLGPSGCGKTTTLRMIAGLEEP---SRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIA  103 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHH
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCCCC---CCCEEEECCEEecccchhhhcccccccceecccchhhcchhhhhHhhh
Confidence            46788999999999999999999999874   345555543210          012345555555  445667777762


Q ss_pred             cc--ccCCCCCh--HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882          109 GW--ITNLPFDS--KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA  176 (454)
Q Consensus       109 ~~--~~~~~~~~--~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~  176 (454)
                      ..  ....+...  .+++++++.+++...      ....+..|++++       |||+.+|+||+||||| ++|+..+..
T Consensus       104 ~~~~~~~~~~~e~~~~v~~~l~~~~l~~~------~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~  177 (240)
T d1g2912         104 FPLKLRKVPRQEIDQRVREVAELLGLTEL------LNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR  177 (240)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHTCGGG------TTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHH
T ss_pred             hhHHHcCCCHHHHHHHHHHHHHHcCChhH------hcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHH
Confidence            22  22222221  345556666665331      122344556555       7899999999999999 899999999


Q ss_pred             HHHHHHHHHhC-Cc-EEEEecCCCccchhcCC
Q 012882          177 LSGIVSRLLST-GT-VLVATSNRAPWDLNQDG  206 (454)
Q Consensus       177 L~~ll~~L~~~-G~-vlV~ThN~~P~dLy~~~  206 (454)
                      ++++|.++.++ |. +|++|||.....-++++
T Consensus       178 i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~dr  209 (240)
T d1g2912         178 MRAELKKLQRQLGVTTIYVTHDQVEAMTMGDR  209 (240)
T ss_dssp             HHHHHHHHHHHHTCEEEEEESCHHHHHHHCSE
T ss_pred             HHHHHHHHHhccCCEEEEEcCCHHHHHHhCCE
Confidence            99999999765 88 99999985433333333

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.80  E-value=9.8e-21  Score=179.47  Aligned_cols=149  Identities=15%  Similarity=0.224  Sum_probs=101.5

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-----HHHHHH--HHHHhhh--hhcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-----LKINEH--MHRLWKN--QVAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-----~~~~~~--i~~~~~~--~~~~~t~~e~l~~~  110 (454)
                      .+.++-++|+||||||||||+++++|.+++   ..+.+.+++.-     .....+  +.+++|.  .++.+|+.+++...
T Consensus        29 i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p---~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~  105 (240)
T d1ji0a_          29 VPRGQIVTLIGANGAGKTTTLSAIAGLVRA---QKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMG  105 (240)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGG
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhCCCCC---CccEEEecccccccccHHHHHHhcccccCcccccCCcccHHHHHHHH
Confidence            346788999999999999999999999975   34555554321     122222  4455554  56778999987544


Q ss_pred             ccCCCCChHH---HHHHHHHH-hhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHH
Q 012882          111 ITNLPFDSKV---MEWVAAEE-KYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALS  178 (454)
Q Consensus       111 ~~~~~~~~~~---~e~ll~~~-~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~  178 (454)
                      ..........   .+.++..+ ++..      .....+..+++++       +||+.+|+||+||||+ ++|+..+..++
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~  179 (240)
T d1ji0a_         106 AYNRKDKEGIKRDLEWIFSLFPRLKE------RLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF  179 (240)
T ss_dssp             GTTCCCSSHHHHHHHHHHHHCHHHHT------TTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHHHhhChHH------HHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHH
Confidence            3333222222   23333322 2211      1122233455554       6888999999999999 89999999999


Q ss_pred             HHHHHHHhCCc-EEEEecCC
Q 012882          179 GIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       179 ~ll~~L~~~G~-vlV~ThN~  197 (454)
                      +++.++.++|+ +|++|||.
T Consensus       180 ~~i~~l~~~g~til~~tH~l  199 (240)
T d1ji0a_         180 EVIQKINQEGTTILLVEQNA  199 (240)
T ss_dssp             HHHHHHHHTTCCEEEEESCH
T ss_pred             HHHHHHHhCCCEEEEEeCCH
Confidence            99999999988 99999985

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.80  E-value=1.4e-21  Score=184.34  Aligned_cols=153  Identities=15%  Similarity=0.119  Sum_probs=105.7

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH----HHHHHHHHHHhhh--hhcccchhhhhhccccCCCCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKN--QVAEKSLRSSISGWITNLPFD  117 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~----~~~~~~i~~~~~~--~~~~~t~~e~l~~~~~~~~~~  117 (454)
                      .-++|+||||||||||+++|+|.++|   ..+.+.+++.-    ...++.++++.|.  +.+.+|+.+++...+......
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~~p---~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~~~~~~  101 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIVKP---DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERV  101 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHH
T ss_pred             EEEEEECCCCChHHHHHHHHHcCCCC---CceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhhhcccCHH
Confidence            45789999999999999999999975   34566665421    1123456777666  456678888874333322221


Q ss_pred             h--HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC
Q 012882          118 S--KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST  187 (454)
Q Consensus       118 ~--~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~  187 (454)
                      .  .++++++..+++..      .....+..+++++       |||+.+|+||+||||+ ++|+..+..+.+++.++.++
T Consensus       102 ~~~~~v~~~l~~~gl~~------~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~  175 (240)
T d2onka1         102 ERDRRVREMAEKLGIAH------LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQRE  175 (240)
T ss_dssp             HHHHHHHHHHHTTTCTT------TTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHh------hhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHh
Confidence            1  34555565555532      2233345556654       7889999999999999 89999999999999999764


Q ss_pred             -Cc-EEEEecCCCccchhcC
Q 012882          188 -GT-VLVATSNRAPWDLNQD  205 (454)
Q Consensus       188 -G~-vlV~ThN~~P~dLy~~  205 (454)
                       |+ +|++|||.....-+++
T Consensus       176 ~g~tvi~vtHd~~~~~~~ad  195 (240)
T d2onka1         176 FDVPILHVTHDLIEAAMLAD  195 (240)
T ss_dssp             HTCCEEEEESCHHHHHHHCS
T ss_pred             cCCeEEEEeCCHHHHHHhCC
Confidence             77 9999999543333333

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.79  E-value=3e-20  Score=177.76  Aligned_cols=152  Identities=14%  Similarity=0.122  Sum_probs=106.1

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-------------------HHHHHHHHHHHhhh--hh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-------------------MLKINEHMHRLWKN--QV   98 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-------------------~~~~~~~i~~~~~~--~~   98 (454)
                      ...+.-++|+||||||||||+++++|..++   ..+.|.+.+.                   .....+.++++.|.  ..
T Consensus        25 i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p---~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~  101 (258)
T d1b0ua_          25 ARAGDVISIIGSSGSGKSTFLRCINFLEKP---SEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLW  101 (258)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCC
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHHcCccC---CCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEEEechhhc
Confidence            356788999999999999999999999874   3455555431                   12345566666665  45


Q ss_pred             cccchhhhhh-ccccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCC
Q 012882           99 AEKSLRSSIS-GWITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEI  166 (454)
Q Consensus        99 ~~~t~~e~l~-~~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp  166 (454)
                      +.+|+.+++. ........+.    ..+.+++..+++....     ....+..|++++       +||+.+|+||++|||
T Consensus       102 ~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~p~~LSGG~~QRv~iAraL~~~P~llilDEP  176 (258)
T d1b0ua_         102 SHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERA-----QGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEP  176 (258)
T ss_dssp             TTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHH-----HTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEEST
T ss_pred             cchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----hccCcccccHHHHHHHHHHHHHhcCCCEEEeccc
Confidence            5678888763 2222222222    3445555555553211     111234566665       788999999999999


Q ss_pred             C-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCCCc
Q 012882          167 Q-TVDVFAIVALSGIVSRLLSTGT-VLVATSNRAP  199 (454)
Q Consensus       167 ~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~P  199 (454)
                      | +||+..+..+.++|.++.++|. +|++|||...
T Consensus       177 T~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~  211 (258)
T d1b0ua_         177 TSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF  211 (258)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHH
T ss_pred             cccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHH
Confidence            9 8999999999999999999988 9999999533

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.79  E-value=7.8e-20  Score=171.68  Aligned_cols=150  Identities=11%  Similarity=0.116  Sum_probs=101.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---------HHH-HHHHHHHhhh--hhcccchhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---------LKI-NEHMHRLWKN--QVAEKSLRSSI  107 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---------~~~-~~~i~~~~~~--~~~~~t~~e~l  107 (454)
                      ...+.-++|+||||||||||+++++|..+|   ..+.|.+++.-         ... .+.++++.|.  +.+.+|+.+++
T Consensus        28 i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p---~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni  104 (230)
T d1l2ta_          28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDKP---TEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENV  104 (230)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHH
T ss_pred             EcCCCEEEEECCCCCCcchhhHhccCCCCC---CcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCccHHHHH
Confidence            356788999999999999999999999874   34566665421         112 2457777776  45678888886


Q ss_pred             hccc--cCC-CCCh-HHHH---HHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHH
Q 012882          108 SGWI--TNL-PFDS-KVME---WVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVF  172 (454)
Q Consensus       108 ~~~~--~~~-~~~~-~~~e---~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~  172 (454)
                      ....  ... ..+. ...+   +++...++...     ........+++++       |||+.+|+||++|||| +||+.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~  179 (230)
T d1l2ta_         105 ELPLIFKYRGAMSGEERRKRALECLKMAELEER-----FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSK  179 (230)
T ss_dssp             HHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGG-----GTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHH
T ss_pred             hHHHHHhccCCCCHHHHHHHHHHHHHhhchhhh-----hhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHH
Confidence            3211  111 1222 2333   33344333211     1111233455554       7889999999999999 89999


Q ss_pred             HHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 012882          173 AIVALSGIVSRLLST-GT-VLVATSNR  197 (454)
Q Consensus       173 ~a~~L~~ll~~L~~~-G~-vlV~ThN~  197 (454)
                      ++..+.++|..+.++ |+ +|++||+.
T Consensus       180 ~~~~i~~~l~~l~~~~g~tii~vTHd~  206 (230)
T d1l2ta_         180 TGEKIMQLLKKLNEEDGKTVVVVTHDI  206 (230)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEECSCH
T ss_pred             HHHHHHHHHHHHHHhhCCEEEEECCCH
Confidence            999999999999764 87 99999985

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.79  E-value=3e-21  Score=182.42  Aligned_cols=150  Identities=19%  Similarity=0.209  Sum_probs=107.2

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH---------HHHHHHHHHHhhh--hhcccchhhhhh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---------LKINEHMHRLWKN--QVAEKSLRSSIS  108 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~---------~~~~~~i~~~~~~--~~~~~t~~e~l~  108 (454)
                      ...+.-++|+||||||||||+++|+|..+|   ..+.+.+.+..         ....+.++++.|.  +.+.+|+.+++.
T Consensus        28 i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p---~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~  104 (242)
T d1oxxk2          28 IENGERFGILGPSGAGKTTFMRIIAGLDVP---STGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIA  104 (242)
T ss_dssp             ECTTCEEEEECSCHHHHHHHHHHHHTSSCC---SEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHH
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHHcCcCC---CCceEEECCEEeecCchhhcchhhccceEEeccccccccccHHHHhh
Confidence            346788999999999999999999999875   23455554321         1123346777765  466789999884


Q ss_pred             ccccCCCCCh----HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHH
Q 012882          109 GWITNLPFDS----KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVA  176 (454)
Q Consensus       109 ~~~~~~~~~~----~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~  176 (454)
                      ..+.....+.    .++++++..+++...      .......+++++       |||+.+|+||++|||+ +||+..+..
T Consensus       105 ~~l~~~~~~~~~~~~~v~~~l~~~gL~~~------~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~  178 (242)
T d1oxxk2         105 FPLTNMKMSKEEIRKRVEEVAKILDIHHV------LNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDS  178 (242)
T ss_dssp             GGGTTSSCCHHHHHHHHHHHHHHTTCGGG------TTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHH
T ss_pred             hhhHhhcCCHHHHHHHHHHHHhhcChHhh------hhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHH
Confidence            4333333332    445667777776432      122334555554       7889999999999999 899999999


Q ss_pred             HHHHHHHHHhC-Cc-EEEEecCCC
Q 012882          177 LSGIVSRLLST-GT-VLVATSNRA  198 (454)
Q Consensus       177 L~~ll~~L~~~-G~-vlV~ThN~~  198 (454)
                      +.++|.++.++ |. +|++|||..
T Consensus       179 i~~~i~~l~~~~g~tvi~vTHd~~  202 (242)
T d1oxxk2         179 ARALVKEVQSRLGVTLLVVSHDPA  202 (242)
T ss_dssp             HHHHHHHHHHHHCCEEEEEESCHH
T ss_pred             HHHHHHHHHhccCCEEEEEECCHH
Confidence            99999999654 87 999999853

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.78  E-value=2.8e-19  Score=170.79  Aligned_cols=158  Identities=15%  Similarity=0.068  Sum_probs=108.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh-------HHHHHHHHHHHhhh--hhcccchhhhhhcc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-------MLKINEHMHRLWKN--QVAEKSLRSSISGW  110 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f-------~~~~~~~i~~~~~~--~~~~~t~~e~l~~~  110 (454)
                      ..++.-++|+||||||||||+++++|.+++   ..+.|.+++.       ....+..+.+++|.  ..+.+|+.+++...
T Consensus        27 v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p---~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~  103 (254)
T d1g6ha_          27 VNKGDVTLIIGPNGSGKSTLINVITGFLKA---DEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIG  103 (254)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGG
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHHCCCcC---CCcEEEECCEeccchhHHHHHHhcCCccCCccccCCCCeeeeeeeeh
Confidence            346788999999999999999999999974   3456665432       11223345666665  46778999987332


Q ss_pred             cc--------------CCCCCh---HHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCC
Q 012882          111 IT--------------NLPFDS---KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEI  166 (454)
Q Consensus       111 ~~--------------~~~~~~---~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp  166 (454)
                      ..              ......   ..+.+++..+++...      ....+..|++++       |||+.+|+||+||||
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~LSgG~~Qrv~iAraL~~~P~llilDEP  177 (254)
T d1g6ha_         104 EICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL------YDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEP  177 (254)
T ss_dssp             GTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG------TTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEEST
T ss_pred             hhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchh------ccCchhhCCcHHHHHHHHHHHHHhCcCchhhcCC
Confidence            11              111122   223344444444221      122234455554       688899999999999


Q ss_pred             C-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCCCccchhcCC
Q 012882          167 Q-TVDVFAIVALSGIVSRLLSTGT-VLVATSNRAPWDLNQDG  206 (454)
Q Consensus       167 ~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~P~dLy~~~  206 (454)
                      + ++|+..+..+.+++.++.++|+ ||++|||.....-++++
T Consensus       178 t~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Dr  219 (254)
T d1g6ha_         178 IAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDH  219 (254)
T ss_dssp             TTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSE
T ss_pred             cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCE
Confidence            9 8999999999999999999998 99999998666555555

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=6.2e-18  Score=159.16  Aligned_cols=147  Identities=19%  Similarity=0.202  Sum_probs=90.2

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH------HHHHHHHHHHhhhh--hcccchhhhhhccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM------LKINEHMHRLWKNQ--VAEKSLRSSISGWI  111 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~------~~~~~~i~~~~~~~--~~~~t~~e~l~~~~  111 (454)
                      ...+.-++|+||||||||||+++++|..+    .++.+.|.+..      ..+.....++.+..  ....++.+++....
T Consensus        22 I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~----~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   97 (231)
T d1l7vc_          22 VRAGEILHLVGPNGAGKSTLLARMAGMTS----GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQ   97 (231)
T ss_dssp             EETTCEEECBCCTTSSHHHHHHHHHTSCC----CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHC
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCCC----CceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHHHhhhcc
Confidence            34678899999999999999999999765    23455554321      11111122222221  11123333332111


Q ss_pred             cCCCCChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhcc-------CCcEEEeeCCC-CCCHHHHHH
Q 012882          112 TNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQR-------GASILCFDEIQ-TVDVFAIVA  176 (454)
Q Consensus       112 ~~~~~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~-------~p~lL~LDEp~-~lD~~~a~~  176 (454)
                      . .....+..++++..+++....      ......+++++       ++|++       +|+||+||||+ +||+..+..
T Consensus        98 ~-~~~~~~~~~~~~~~~~l~~~~------~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~  170 (231)
T d1l7vc_          98 H-DKTRTELLNDVAGALALDDKL------GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSA  170 (231)
T ss_dssp             S-CTTCHHHHHHHHHHTTCTTTT------TSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHH
T ss_pred             c-hhhHHHHHHHHHHhcCCHhHh------CcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHH
Confidence            1 112234555666665553321      11222344443       45554       77999999999 899999999


Q ss_pred             HHHHHHHHHhCCc-EEEEecCC
Q 012882          177 LSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       177 L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      +.++++.+.+.|+ ||++|||.
T Consensus       171 i~~~i~~l~~~g~tii~vtHdl  192 (231)
T d1l7vc_         171 LDKILSALCQQGLAIVMSSHDL  192 (231)
T ss_dssp             HHHHHHHHHHTTCEEEECCCCH
T ss_pred             HHHHHHHHHhCCCEEEEEeCCH
Confidence            9999999999998 89999984

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=2.4e-17  Score=155.91  Aligned_cols=153  Identities=14%  Similarity=0.107  Sum_probs=102.4

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh-hhcccchhhhhhccccC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN-QVAEKSLRSSISGWITN  113 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~  113 (454)
                      ++++-++|+|+||||||||+++|.|.+++   .++.|.+++.      ...+++.++++.|+ .....|+.+++..... 
T Consensus        27 ~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p---~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~~~~-  102 (241)
T d2pmka1          27 KQGEVIGIVGRSGSGKSTLTKLIQRFYIP---ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-  102 (241)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHCTTST-
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcCCC---CCCEEEECCEEecccchhhhhceEEEEecccccCCccccccccccCc-
Confidence            46788999999999999999999999975   2455555432      34567788888887 2334688888743221 


Q ss_pred             CCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHH
Q 012882          114 LPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGI  180 (454)
Q Consensus       114 ~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~l  180 (454)
                       ..+.......+...++....     +....+..-...+++++       |||+.+|+||+||||+ +||+.+...+.+.
T Consensus       103 -~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~  181 (241)
T d2pmka1         103 -GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN  181 (241)
T ss_dssp             -TCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHH
T ss_pred             -cccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHH
Confidence             12333333333333332211     01111111123445444       7889999999999999 8999999999999


Q ss_pred             HHHHHhCCcEEEEecCCC
Q 012882          181 VSRLLSTGTVLVATSNRA  198 (454)
Q Consensus       181 l~~L~~~G~vlV~ThN~~  198 (454)
                      |..+.+..++|++||+..
T Consensus       182 l~~l~~~~Tvi~itH~l~  199 (241)
T d2pmka1         182 MHKICKGRTVIIIAHRLS  199 (241)
T ss_dssp             HHHHHTTSEEEEECSSGG
T ss_pred             HHHHhCCCEEEEEECCHH
Confidence            999976334999999853

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.5e-17  Score=156.79  Aligned_cols=153  Identities=14%  Similarity=0.137  Sum_probs=97.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhhh-hcccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKNQ-VAEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~  112 (454)
                      .++++-++|+||||||||||+++|.|.++|.   .+.|.+++.      ....++.++++.|+. .-..|+.+++.....
T Consensus        37 i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~g~~  113 (251)
T d1jj7a_          37 LRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLT  113 (251)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHCSCS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcccCCC---cCEEEECCEecchhhhHHHHHHhhhccccccccCcchhhhhhhhhc
Confidence            3567889999999999999999999999752   345555432      235667788887762 224588888744322


Q ss_pred             CCCCChHHHHHHHHHHhhhhH-----HhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          113 NLPFDSKVMEWVAAEEKYKQE-----VQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       113 ~~~~~~~~~e~ll~~~~l~~~-----~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                      ....... .............     .+....+..-...+++++       |||+++|+||+||||| +||+.+...+.+
T Consensus       114 ~~~~~~~-~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~  192 (251)
T d1jj7a_         114 QKPTMEE-ITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQ  192 (251)
T ss_dssp             SCCCHHH-HHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred             ccchHHH-HHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHH
Confidence            2221111 1111111111100     001111111112344444       7889999999999999 899999999999


Q ss_pred             HHHHHHhC-Cc-EEEEecC
Q 012882          180 IVSRLLST-GT-VLVATSN  196 (454)
Q Consensus       180 ll~~L~~~-G~-vlV~ThN  196 (454)
                      +|..+.++ |+ +|++||+
T Consensus       193 ~l~~l~~~~~~Tvi~itH~  211 (251)
T d1jj7a_         193 LLYESPERYSRSVLLITQH  211 (251)
T ss_dssp             HHHTCGGGGGCEEEEECSC
T ss_pred             HHHHHhhhcCCEEEEEeCC
Confidence            99998754 66 9999998

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.68  E-value=1.5e-17  Score=158.49  Aligned_cols=155  Identities=18%  Similarity=0.179  Sum_probs=98.2

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh-hhcccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN-QVAEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~  112 (454)
                      .++++-++|+||||||||||+++|+|..+|   ..+.|.+++.      ...++..+.+++|+ .....|+.+++.....
T Consensus        38 i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p---~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~  114 (253)
T d3b60a1          38 IPAGKTVALVGRSGSGKSTIASLITRFYDI---DEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYART  114 (253)
T ss_dssp             ECTTCEEEEEECTTSSHHHHHHHHTTTTCC---SEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTT
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhcccCC---CccEEEECCcccchhhhhhhhheEEEEeeccccCCcchhhhhhhcCc
Confidence            356788999999999999999999999875   2455555431      23455666777765 2234466666532211


Q ss_pred             CCCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          113 NLPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       113 ~~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                       ...+....+..+...++....     +.+..+..-...+++++       |||+++|+||+||||+ +||+.+...+.+
T Consensus       115 -~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~  193 (253)
T d3b60a1         115 -EEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA  193 (253)
T ss_dssp             -SCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHH
T ss_pred             -ccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHH
Confidence             112333333333333322110     00111111112344443       7888999999999999 899999999999


Q ss_pred             HHHHHHhCCcEEEEecCCC
Q 012882          180 IVSRLLSTGTVLVATSNRA  198 (454)
Q Consensus       180 ll~~L~~~G~vlV~ThN~~  198 (454)
                      +|..+.+..++|++||+..
T Consensus       194 ~l~~l~~~~Tvi~itH~l~  212 (253)
T d3b60a1         194 ALDELQKNRTSLVIAHRLS  212 (253)
T ss_dssp             HHHHHHTTSEEEEECSCGG
T ss_pred             HHHHhccCCEEEEEECCHH
Confidence            9999976444999999864

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.65  E-value=2.9e-17  Score=151.26  Aligned_cols=146  Identities=12%  Similarity=0.112  Sum_probs=92.1

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH-HHHHHHHHHHhhh--hhcccchhhhhhc--cccCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-LKINEHMHRLWKN--QVAEKSLRSSISG--WITNLP  115 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~-~~~~~~i~~~~~~--~~~~~t~~e~l~~--~~~~~~  115 (454)
                      +.++-++|+||||||||||+++++|.++|   .++.+.+++.. ......+.++++.  .....++.+++..  ..+...
T Consensus        25 ~~Gei~~l~G~NGsGKSTLl~~i~gl~~p---~~G~I~~~g~~i~~~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~  101 (200)
T d1sgwa_          25 EKGNVVNFHGPNGIGKTTLLKTISTYLKP---LKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK  101 (200)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhccccc---CCCEEEECCEehhHhcCcEEEEeecccCCCCcCHHHHHHHHHHhcCCc
Confidence            46778999999999999999999999975   34566665422 1222334444443  2344566666522  222333


Q ss_pred             CChHHHHHHHHHHhhhhHHhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhC
Q 012882          116 FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLLST  187 (454)
Q Consensus       116 ~~~~~~e~ll~~~~l~~~~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~  187 (454)
                      .+...+...+..+++.+   ....    ...+++++       ++|+.+|+||+||||+ ++|+.++..+.+.+.++.+.
T Consensus       102 ~~~~~~~~~l~~~~~~~---~~~~----~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~  174 (200)
T d1sgwa_         102 VNKNEIMDALESVEVLD---LKKK----LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE  174 (200)
T ss_dssp             CCHHHHHHHHHHTTCCC---TTSB----GGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCcc---cccc----cCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhC
Confidence            33433344444443321   1111    22345443       6889999999999999 89999999999999888765


Q ss_pred             -CcEEEEecC
Q 012882          188 -GTVLVATSN  196 (454)
Q Consensus       188 -G~vlV~ThN  196 (454)
                       |+++|++|+
T Consensus       175 ~~~~ii~~~~  184 (200)
T d1sgwa_         175 KGIVIISSRE  184 (200)
T ss_dssp             HSEEEEEESS
T ss_pred             CCEEEEEEec
Confidence             445555543

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.64  E-value=1.1e-16  Score=152.33  Aligned_cols=153  Identities=11%  Similarity=0.067  Sum_probs=102.9

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh------HHHHHHHHHHHhhh-hhcccchhhhhhcccc
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA------MLKINEHMHRLWKN-QVAEKSLRSSISGWIT  112 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f------~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~  112 (454)
                      .++++-++|+|+||||||||+++|.|..++   ..+.|.+++.      ...+++.+.++.|+ .....|+.+|+.....
T Consensus        41 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p---~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~  117 (255)
T d2hyda1          41 IEKGETVAFVGMSGGGKSTLINLIPRFYDV---TSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP  117 (255)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHTTTTTSSCC---SEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHHhcCCc---cccccccCCEEcccCCHHHhhheeeeeeccccCCCCCHHHHHhccCc
Confidence            356788999999999999999999999875   2455555432      23566778888776 3345688888833211


Q ss_pred             CCCCChHHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHH
Q 012882          113 NLPFDSKVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSG  179 (454)
Q Consensus       113 ~~~~~~~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~  179 (454)
                        ........+.+...++....     +.+..+..-...+++++       |||+++|+||+||||+ .||+.+...+.+
T Consensus       118 --~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~  195 (255)
T d2hyda1         118 --TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQE  195 (255)
T ss_dssp             --SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred             --CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence              12233344444444433211     11111111122345443       7888999999999999 899999999999


Q ss_pred             HHHHHHhCCcEEEEecCC
Q 012882          180 IVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       180 ll~~L~~~G~vlV~ThN~  197 (454)
                      .|..+.+..++|++||+.
T Consensus       196 ~l~~l~~~~TvI~itH~~  213 (255)
T d2hyda1         196 ALDVLSKDRTTLIVAHRL  213 (255)
T ss_dssp             HHHHHTTTSEEEEECSSG
T ss_pred             HHHHHhcCCEEEEEeCCH
Confidence            999987644599999985

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.64  E-value=1e-17  Score=158.69  Aligned_cols=155  Identities=13%  Similarity=0.109  Sum_probs=96.0

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechh----HHHHHHHHHHHhhhh-hcccchhhhhhccccCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA----MLKINEHMHRLWKNQ-VAEKSLRSSISGWITNL  114 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f----~~~~~~~i~~~~~~~-~~~~t~~e~l~~~~~~~  114 (454)
                      .++++-++|+||||||||||+++|+|...|. .|...+.....    ...+++.++++.|+. .-..|+.+++.......
T Consensus        25 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~  103 (242)
T d1mv5a_          25 AQPNSIIAFAGPSGGGKSTIFSLLERFYQPT-AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGD  103 (242)
T ss_dssp             ECTTEEEEEECCTTSSHHHHHHHHTTSSCCS-BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHHhhCCC-CCEEEECCEEeccccHHHHHhheEEEccccccCCcchhhheecccccc
Confidence            3567889999999999999999999999753 44444322211    112345567777762 22347777774332221


Q ss_pred             CCChHHHHHHHHHHhhhhH-----HhhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHH
Q 012882          115 PFDSKVMEWVAAEEKYKQE-----VQMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIV  181 (454)
Q Consensus       115 ~~~~~~~e~ll~~~~l~~~-----~~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll  181 (454)
                       .........+....+...     ......+..-...+++++       |||+.+|+||+||||| ++|+.++..+.++|
T Consensus       104 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l  182 (242)
T d1mv5a_         104 -YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL  182 (242)
T ss_dssp             -SCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHH
T ss_pred             -cchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHH
Confidence             222233333332222110     000011111112344444       7888999999999999 89999999999999


Q ss_pred             HHHHhCCc-EEEEecCC
Q 012882          182 SRLLSTGT-VLVATSNR  197 (454)
Q Consensus       182 ~~L~~~G~-vlV~ThN~  197 (454)
                      ..+.+ |+ +|++||+.
T Consensus       183 ~~l~~-~~Tvi~itH~l  198 (242)
T d1mv5a_         183 DSLMK-GRTTLVIAHRL  198 (242)
T ss_dssp             HHHHT-TSEEEEECCSH
T ss_pred             HHHcC-CCEEEEEECCH
Confidence            99975 55 99999973

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=2.2e-16  Score=152.51  Aligned_cols=145  Identities=18%  Similarity=0.148  Sum_probs=87.9

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhHHHHHHHHHHHhhh-hhcccchhhhhhccccCCCCCh
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKN-QVAEKSLRSSISGWITNLPFDS  118 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~~~~~~~i~~~~~~-~~~~~t~~e~l~~~~~~~~~~~  118 (454)
                      .++++-++|+||||||||||+++|+|.+++.   .+.|.+.+       ++.+++|. .....|+.+++...   ...+.
T Consensus        59 i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g-------~i~~v~Q~~~l~~~tv~eni~~~---~~~~~  125 (281)
T d1r0wa_          59 IEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG-------RVSFCSQFSWIMPGTIKENIIFG---VSYDE  125 (281)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS-------CEEEECSSCCCCSEEHHHHHTTT---SCCCH
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhCCCcCC---CcEEEECC-------EEEEEeccccccCceeecccccc---ccccc
Confidence            4567889999999999999999999999752   34554443       24455554 12234777776322   12333


Q ss_pred             HHHHHHHHHHhhhhHH-----hhcchHHHHHHHhhhhh-------hhhccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHH
Q 012882          119 KVMEWVAAEEKYKQEV-----QMKNILPAVADKFLVDQ-------HADQRGASILCFDEIQ-TVDVFAIVALSGIVSRLL  185 (454)
Q Consensus       119 ~~~e~ll~~~~l~~~~-----~~~~~l~~va~~l~~~~-------rAL~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~  185 (454)
                      ...+.++....+....     .....+..-...+++++       |||+++|+||+||||+ +||+.+...+.+.+....
T Consensus       126 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~  205 (281)
T d1r0wa_         126 YRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL  205 (281)
T ss_dssp             HHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCC
T ss_pred             hHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHh
Confidence            3334443333322110     00001111112345554       7889999999999999 899998887765432333


Q ss_pred             hCCc-EEEEecCC
Q 012882          186 STGT-VLVATSNR  197 (454)
Q Consensus       186 ~~G~-vlV~ThN~  197 (454)
                      ..|. +|++||+.
T Consensus       206 ~~~~tvi~itH~~  218 (281)
T d1r0wa_         206 MANKTRILVTSKM  218 (281)
T ss_dssp             TTTSEEEEECSCH
T ss_pred             hCCCEEEEEechH
Confidence            3455 89999873

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.89  E-value=3.3e-09  Score=97.38  Aligned_cols=48  Identities=19%  Similarity=0.319  Sum_probs=42.6

Q ss_pred             cCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchh
Q 012882          156 RGASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLN  203 (454)
Q Consensus       156 ~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy  203 (454)
                      ...++||+|+.+  .-+......|..++..+.+.|+.+|+|++.+|.+|-
T Consensus        96 ~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~  145 (213)
T d1l8qa2          96 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLD  145 (213)
T ss_dssp             HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCT
T ss_pred             hhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcchhcc
Confidence            568999999999  357888889999999999999988889999999874

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.89  E-value=5.7e-10  Score=97.98  Aligned_cols=24  Identities=25%  Similarity=0.362  Sum_probs=22.2

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGATEG   69 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~l~~   69 (454)
                      ++|.||||||||||++++++.+++
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCC
Confidence            789999999999999999998863

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=98.70  E-value=3.3e-08  Score=92.63  Aligned_cols=29  Identities=38%  Similarity=0.564  Sum_probs=26.0

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ...|+|+.|+||+|||||+|++++++.+.
T Consensus        39 ~~~~~giLl~GppGtGKT~la~aia~~~~   67 (247)
T d1ixza_          39 ARIPKGVLLVGPPGVGKTHLARAVAGEAR   67 (247)
T ss_dssp             CCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCceEEEecCCCCChhHHHHHHHHHcC
Confidence            45789999999999999999999998764

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.65  E-value=3.6e-08  Score=91.12  Aligned_cols=57  Identities=21%  Similarity=0.226  Sum_probs=39.7

Q ss_pred             eeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882            3 VSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      |.++|+|-+++.-.|.    -.-.+.+..++..    ...+..++|+||+|+||||++++++..+
T Consensus         1 W~eky~P~~~~diig~----~~~~~~L~~~~~~----~~~~~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2           1 WVDKYRPKSLNALSHN----EELTNFLKSLSDQ----PRDLPHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CTTTTCCCSGGGCCSC----HHHHHHHHTTTTC----TTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             CCcccCCCCHHHccCc----HHHHHHHHHHHHc----CCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            8899999999987662    1111223333322    2334579999999999999999998754

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=98.60  E-value=2.6e-08  Score=93.84  Aligned_cols=29  Identities=34%  Similarity=0.636  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ...|+|+.|+||+|||||+++++++..+.
T Consensus        42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~   70 (256)
T d1lv7a_          42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAK   70 (256)
T ss_dssp             -CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence            45789999999999999999999998653

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.57  E-value=9.1e-08  Score=89.93  Aligned_cols=30  Identities=33%  Similarity=0.646  Sum_probs=26.6

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      +.++|+|+.|+||+|||||+|+++++..+.
T Consensus        34 g~~~~~giLL~GppGtGKT~l~~ala~~~~   63 (258)
T d1e32a2          34 GVKPPRGILLYGPPGTGKTLIARAVANETG   63 (258)
T ss_dssp             CCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCceeEEecCCCCCchHHHHHHHHHhC
Confidence            345789999999999999999999999764

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.52  E-value=5.7e-08  Score=89.04  Aligned_cols=56  Identities=20%  Similarity=0.185  Sum_probs=40.1

Q ss_pred             eeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882            3 VSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      |.++|+|-+++.-.|.=    ...+++..++...     ..+.++|+||+|+||||++++++..+
T Consensus        14 w~~ky~P~~~~diig~~----~~~~~l~~~i~~~-----~~~~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          14 WVEKYRPQRLDDIVGQE----HIVKRLKHYVKTG-----SMPHLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             HHHHTCCCSTTTCCSCH----HHHHHHHHHHHHT-----CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHccCcH----HHHHHHHHHHHcC-----CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            78999999988876521    1113345555432     23469999999999999999998765

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.51  E-value=9.2e-08  Score=88.46  Aligned_cols=63  Identities=21%  Similarity=0.239  Sum_probs=41.9

Q ss_pred             ceeecccCCccccCcccccccccchhhhhhhccC------------CCCCCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882            2 DVSVRKNPENVEPGVGRWVSYLNRERKLDSLVGR------------CPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .|.++|+|-+++.-.|.    -...+++..++..            ...+...+++++|+||+|+||||++++++..+.
T Consensus         3 lW~eky~P~~~~dlig~----~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2           3 LWTVKYAPTNLQQVCGN----KGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             CHHHHTCCSSGGGCCSC----HHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ccccCcCCCCHHHhcCC----HHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            48899999998776551    0111223332211            111234567899999999999999999999774

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.46  E-value=6e-08  Score=88.63  Aligned_cols=57  Identities=16%  Similarity=0.138  Sum_probs=40.7

Q ss_pred             ceeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882            2 DVSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      -|.++|+|.+++.-.|.=    .-.+.+..++....     ...++|+||+|+||||++++++..+
T Consensus         4 pw~eKyrP~~~~d~ig~~----~~~~~L~~~~~~~~-----~~~~ll~Gp~G~GKTt~a~~la~~l   60 (224)
T d1sxjb2           4 PWVEKYRPQVLSDIVGNK----ETIDRLQQIAKDGN-----MPHMIISGMPGIGKTTSVHCLAHEL   60 (224)
T ss_dssp             CHHHHTCCSSGGGCCSCT----HHHHHHHHHHHSCC-----CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             chHhHhCCCCHHHhcCCH----HHHHHHHHHHHcCC-----CCeEEEECCCCCCchhhHHHHHHHH
Confidence            499999999999876521    11233555554321     2348999999999999999998765

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.44  E-value=4.1e-08  Score=89.70  Aligned_cols=56  Identities=20%  Similarity=0.242  Sum_probs=40.1

Q ss_pred             eeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882            3 VSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      |.++|+|.+++.-.|.=    ...+.+..++....     ...++|+||+|+||||++++|+..+
T Consensus         4 w~ekyrP~~~~divg~~----~~~~~L~~~i~~~~-----~~~lLl~Gp~G~GKttl~~~la~~l   59 (227)
T d1sxjc2           4 WVEKYRPETLDEVYGQN----EVITTVRKFVDEGK-----LPHLLFYGPPGTGKTSTIVALAREI   59 (227)
T ss_dssp             HHHHTCCSSGGGCCSCH----HHHHHHHHHHHTTC-----CCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             hhhhhCCCCHHHccCcH----HHHHHHHHHHHcCC-----CCeEEEECCCCCChhHHHHHHHHHh
Confidence            88999999998876620    11234555554321     2248999999999999999998754

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.39  E-value=5.3e-07  Score=84.90  Aligned_cols=30  Identities=30%  Similarity=0.551  Sum_probs=26.8

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      +.+.++|+.|+||+|||||+|++++++.+.
T Consensus        37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence            345789999999999999999999999874

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=2.7e-07  Score=85.33  Aligned_cols=57  Identities=16%  Similarity=0.206  Sum_probs=39.3

Q ss_pred             eeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882            3 VSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      +..+|+|.+++.-.|.  +  .-.+.+..++..    ...|..+.|+||+|+||||+.++++..+
T Consensus         2 ~~~KyrP~~~~dlig~--~--~~~~~L~~~i~~----~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l   58 (239)
T d1njfa_           2 LARKWRPQTFADVVGQ--E--HVLTALANGLSL----GRIHHAYLFSGTRGVGKTSIARLLAKGL   58 (239)
T ss_dssp             HHHHTCCSSGGGSCSC--H--HHHHHHHHHHHT----TCCCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             chhhhCCCCHHHccCh--H--HHHHHHHHHHHc----CCCCeeEEEECCCCCcHHHHHHHHHHHh
Confidence            4578999988876651  0  011234444432    2357889999999999999999987654

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.24  E-value=6.5e-07  Score=83.43  Aligned_cols=28  Identities=25%  Similarity=0.218  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .+++|+.|+||+|||||++++++++.+.
T Consensus        38 ~p~~~vLL~GppGtGKT~la~alA~~~~   65 (246)
T d1d2na_          38 TPLVSVLLEGPPHSGKTALAAKIAEESN   65 (246)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHhhccc
Confidence            3579999999999999999999998653

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.19  E-value=6.7e-07  Score=81.49  Aligned_cols=56  Identities=16%  Similarity=0.191  Sum_probs=39.9

Q ss_pred             eeecccCCccccCcccccccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882            3 VSVRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      |..+|+|-+++.-.|.=    ...+.+..++...     ....++|+||+|+||||++++++..+
T Consensus         2 w~~ky~P~~~~diig~~----~~~~~l~~~i~~~-----~~~~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2           2 WVEKYRPKNLDEVTAQD----HAVTVLKKTLKSA-----NLPHMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             HHHHTCCSSTTTCCSCC----TTHHHHHHHTTCT-----TCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cchhhCCCCHHHccCcH----HHHHHHHHHHHcC-----CCCeEEEECCCCCChHHHHHHHHHHH
Confidence            67899999999876521    1124455565432     12348999999999999999998754

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=1.6e-05  Score=73.14  Aligned_cols=42  Identities=21%  Similarity=0.180  Sum_probs=31.4

Q ss_pred             cCCcEEEeeCCC-CCCHHHHHHH-HHHHHHHHhCC-c-EEEEecCC
Q 012882          156 RGASILCFDEIQ-TVDVFAIVAL-SGIVSRLLSTG-T-VLVATSNR  197 (454)
Q Consensus       156 ~~p~lL~LDEp~-~lD~~~a~~L-~~ll~~L~~~G-~-vlV~ThN~  197 (454)
                      .+..++++||+. ++++.+...+ ..++..+..++ . ++++||..
T Consensus       119 ~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~  164 (234)
T d1wb9a2         119 TEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF  164 (234)
T ss_dssp             CTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred             ccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchH
Confidence            456799999999 8998888666 46677786654 4 67777654

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.94  E-value=7.5e-06  Score=74.77  Aligned_cols=28  Identities=29%  Similarity=0.371  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ..++++.|+||+|+||||+++++++.+.
T Consensus        33 ~~~~~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          33 EPLEHLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             SCCCCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            3578899999999999999999998653

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.93  E-value=6.8e-06  Score=74.91  Aligned_cols=27  Identities=26%  Similarity=0.327  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .++++.|+||+|+||||++++++..+.
T Consensus        34 ~~~~~L~~GPpGtGKT~lA~~la~~~~   60 (238)
T d1in4a2          34 VLDHVLLAGPPGLGKTTLAHIIASELQ   60 (238)
T ss_dssp             CCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHhccC
Confidence            456899999999999999999988764

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=97.83  E-value=6.8e-06  Score=79.17  Aligned_cols=27  Identities=30%  Similarity=0.331  Sum_probs=23.4

Q ss_pred             CCCeEEEE-EcCCCChHHHHHHHHHhCC
Q 012882           41 PAPKGLYL-YGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        41 ~~p~Gl~L-~GpnGsGKTTLm~ll~g~l   67 (454)
                      ..|+|+.| +||+|||||.|.+++++.+
T Consensus       120 ~~~~g~~l~~G~pG~GKT~la~ala~~~  147 (321)
T d1w44a_         120 RYASGMVIVTGKGNSGKTPLVHALGEAL  147 (321)
T ss_dssp             EEESEEEEEECSSSSCHHHHHHHHHHHH
T ss_pred             ccCCceEEEECCCCccHHHHHHHHHHHh
Confidence            45789776 7999999999999999865

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.78  E-value=4.2e-05  Score=69.85  Aligned_cols=42  Identities=21%  Similarity=0.218  Sum_probs=32.4

Q ss_pred             cCCcEEEeeCCC-CCCHHHHHH-HHHHHHHHHhCCc-EEEEecCC
Q 012882          156 RGASILCFDEIQ-TVDVFAIVA-LSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       156 ~~p~lL~LDEp~-~lD~~~a~~-L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      .+..++++||+. ++++.+... .+.++..|.+.+. ++++||..
T Consensus       113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~  157 (224)
T d1ewqa2         113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF  157 (224)
T ss_dssp             CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH
T ss_pred             CCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeech
Confidence            467899999999 899887654 4556677777777 88888863

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=6.8e-06  Score=74.15  Aligned_cols=60  Identities=20%  Similarity=0.233  Sum_probs=41.7

Q ss_pred             cCCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCc
Q 012882          156 RGASILCFDEIQTVDVFAIVALSGIVSRLLSTGT-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSE  231 (454)
Q Consensus       156 ~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~  231 (454)
                      .+.+++++||+..+....+..|.+++++.-. ++ ++++|+|.  ..+             ++-|+.||.++.+...
T Consensus       107 ~~~kviIide~d~l~~~a~n~Llk~lEep~~-~~~fIl~t~~~--~~l-------------l~tI~SRc~~i~~~~~  167 (207)
T d1a5ta2         107 GGAKVVWVTDAALLTDAAANALLKTLEEPPA-ETWFFLATREP--ERL-------------LATLRSRCRLHYLAPP  167 (207)
T ss_dssp             SSCEEEEESCGGGBCHHHHHHHHHHHTSCCT-TEEEEEEESCG--GGS-------------CHHHHTTSEEEECCCC
T ss_pred             CccceEEechhhhhhhhhhHHHHHHHHhhcc-cceeeeeecCh--hhh-------------hhhhcceeEEEecCCC
Confidence            4688999999998888888878777776533 34 45555442  221             2357799999988755

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.58  E-value=1.4e-05  Score=73.68  Aligned_cols=30  Identities=37%  Similarity=0.536  Sum_probs=27.1

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ....|+|+.|+||+|||||||.++|++.+.
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            456799999999999999999999999874

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.48  E-value=0.00011  Score=66.86  Aligned_cols=28  Identities=21%  Similarity=0.294  Sum_probs=25.2

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ..|.+++|+||+|+||||+++.++..+.
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            4678999999999999999999998764

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.39  E-value=6.4e-05  Score=67.20  Aligned_cols=64  Identities=6%  Similarity=0.064  Sum_probs=45.1

Q ss_pred             cCCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchhcCCchhhhhHHHHHHHHhhccccccCCchhh
Q 012882          156 RGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDY  234 (454)
Q Consensus       156 ~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy~~~l~r~~F~~~I~~L~~~~~vv~l~~~~Dy  234 (454)
                      .+.+|+++||...+...++..|...|.+--.....+++|++.  ..             .++-|+.||.++.+..+.+.
T Consensus        78 ~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~--~~-------------ll~TI~SRC~~i~~~~p~~~  141 (198)
T d2gnoa2          78 YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRW--HY-------------LLPTIKSRVFRVVVNVPKEF  141 (198)
T ss_dssp             SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCG--GG-------------SCHHHHTTSEEEECCCCHHH
T ss_pred             CCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCCh--hh-------------CHHHHhcceEEEeCCCchHH
Confidence            467899999999888888888888777653332355555542  22             13468899999998766543

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.20  E-value=4e-05  Score=70.37  Aligned_cols=25  Identities=28%  Similarity=0.183  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      +..++|+||+|+||||+++.++..+
T Consensus        46 ~~~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          46 NMIYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             ceEEEeECCCCCCHHHHHHHHHHHH
Confidence            3457788999999999999998765

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.10  E-value=0.0001  Score=70.32  Aligned_cols=27  Identities=26%  Similarity=0.463  Sum_probs=24.7

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      +|+|+.|+||+|||||+|.++++..+.
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~   74 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLAN   74 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccc
Confidence            679999999999999999999998763

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.00021  Score=68.24  Aligned_cols=28  Identities=29%  Similarity=0.370  Sum_probs=23.6

Q ss_pred             CCCeE-EEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKG-LYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~G-l~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ..|.| ++++||+|+|||.|++.|+..+.
T Consensus        49 ~~p~~~~lf~Gp~GvGKT~lak~la~~l~   77 (315)
T d1r6bx3          49 HKPVGSFLFAGPTGVGKTEVTVQLSKALG   77 (315)
T ss_dssp             TSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CCCceEEEEECCCcchhHHHHHHHHhhcc
Confidence            45665 77889999999999999998764

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00013  Score=62.04  Aligned_cols=24  Identities=29%  Similarity=0.429  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      |.|.|.||+|+|||||++.++..+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            678999999999999999998865

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.99  E-value=0.00017  Score=61.41  Aligned_cols=26  Identities=23%  Similarity=0.397  Sum_probs=23.7

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      +|-+.|.||+|||||||++.|+..+.
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            58899999999999999999998764

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.88  E-value=0.00068  Score=62.32  Aligned_cols=54  Identities=24%  Similarity=0.291  Sum_probs=38.7

Q ss_pred             CCcEEEeeCCCCCCHHHHHHHHHHHHHHH--h--------CCcEEEEecCCCccchhcCCchhh
Q 012882          157 GASILCFDEIQTVDVFAIVALSGIVSRLL--S--------TGTVLVATSNRAPWDLNQDGMQRE  210 (454)
Q Consensus       157 ~p~lL~LDEp~~lD~~~a~~L~~ll~~L~--~--------~G~vlV~ThN~~P~dLy~~~l~r~  210 (454)
                      +-..|+|||+..++...+..|.+++..-.  .        ..+-+|+|++.++.++...+..++
T Consensus        94 ~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~~~~~~~~~~~RlI~~s~~~l~~l~~~~~f~~  157 (247)
T d1ny5a2          94 DGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFRE  157 (247)
T ss_dssp             TTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCH
T ss_pred             CCCEEEEeChHhCCHHHHHHHHHHHHhCCEEECCCCCceecCeEEEEecCCCHHHHHHcCCCcH
Confidence            34689999999999999988888886421  0        123477888888888777654333

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.85  E-value=0.00022  Score=60.63  Aligned_cols=27  Identities=22%  Similarity=0.422  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .+.-+.|.||+||||||+.+.|+..+.
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence            345599999999999999999998764

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.81  E-value=0.00031  Score=59.51  Aligned_cols=27  Identities=15%  Similarity=0.274  Sum_probs=24.3

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .++.|.|.|++||||||+.+.|+..++
T Consensus         2 ~~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           2 TTRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            357899999999999999999999875

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=96.79  E-value=0.0021  Score=52.69  Aligned_cols=39  Identities=23%  Similarity=0.418  Sum_probs=29.4

Q ss_pred             cCCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCc--EEEEe
Q 012882          156 RGASILCFDEIQTVDVFAIVALSGIVSRLLSTGT--VLVAT  194 (454)
Q Consensus       156 ~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~--vlV~T  194 (454)
                      .+.+++|+||.+.++..+...+..++..+...+.  +|.+|
T Consensus        93 ~~~~~vIiDE~H~~~~~~~~~~~~~l~~~~~~~~~~~l~~T  133 (136)
T d1a1va1          93 GAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVVLAT  133 (136)
T ss_dssp             CCCSEEEEETTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEE
T ss_pred             hcCCEEEEecccccCHHHHHHHHHHHHHHHHCCCCcEEEEe
Confidence            6789999999998888887778777776654443  45444

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.79  E-value=0.00041  Score=66.23  Aligned_cols=29  Identities=31%  Similarity=0.492  Sum_probs=23.3

Q ss_pred             CCCCeE-EEEEcCCCChHHHHHHHHHhCCC
Q 012882           40 PPAPKG-LYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        40 ~~~p~G-l~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      +..|.| +.++||+|+|||.|.+.|+..+.
T Consensus        49 ~~kp~~~~lf~Gp~G~GKt~lak~la~~l~   78 (315)
T d1qvra3          49 PNRPIGSFLFLGPTGVGKTELAKTLAATLF   78 (315)
T ss_dssp             SSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred             CCCCceEEEEECCCcchHHHHHHHHHHHhc
Confidence            345676 55669999999999999988763

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.75  E-value=0.00051  Score=62.25  Aligned_cols=41  Identities=17%  Similarity=0.350  Sum_probs=33.0

Q ss_pred             ccccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           21 SYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      +++.|++++..+...      .++.+.|+||.|+|||+|++.++...
T Consensus        13 ~f~GR~~el~~l~~~------~~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          13 DFFDREKEIEKLKGL------RAPITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             GSCCCHHHHHHHHHT------CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             hCCChHHHHHHHHhc------cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence            477888888777542      35789999999999999999887654

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.00027  Score=58.79  Aligned_cols=25  Identities=20%  Similarity=0.478  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      |-+.|.||+||||||+.++|+..+.
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            4588999999999999999998774

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.73  E-value=0.00049  Score=58.21  Aligned_cols=26  Identities=19%  Similarity=0.254  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .|.-|+|.|++||||||+.++|+..+
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34558999999999999999998765

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.00078  Score=59.71  Aligned_cols=23  Identities=26%  Similarity=0.375  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      ...+.|+|++|+|||++..-++.
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHH
Confidence            45789999999999999988875

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.62  E-value=0.00057  Score=57.89  Aligned_cols=27  Identities=26%  Similarity=0.362  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .++-++|.|++||||||+.+.|...+.
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg   29 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPG   29 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            467899999999999999999988764

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.61  E-value=0.0021  Score=57.62  Aligned_cols=36  Identities=28%  Similarity=0.425  Sum_probs=27.4

Q ss_pred             hhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           28 KLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        28 ~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      .++++++.   ..+.+.-+.|+|++|+|||+|+.-|+..
T Consensus        14 ~LD~~l~G---Gi~~gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          14 RLDEMCGG---GFFKDSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             HHHHHTTS---SEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             HHHHhhcC---CCcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            46666653   3456677999999999999998877654

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.56  E-value=0.00055  Score=57.53  Aligned_cols=25  Identities=20%  Similarity=0.258  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      +-+.|.||+||||||+++.|+..++
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC
Confidence            5688999999999999999998764

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=0.00066  Score=57.40  Aligned_cols=27  Identities=22%  Similarity=0.190  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .++-+.|.|++||||||+.+.|+..+.
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            578899999999999999999988663

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.48  E-value=0.00065  Score=58.86  Aligned_cols=26  Identities=15%  Similarity=0.199  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ++-++|.||+|||||||++.|....|
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            56789999999999999999987543

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.43  E-value=0.00085  Score=55.66  Aligned_cols=24  Identities=29%  Similarity=0.351  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      +-|.|.|++|||||||++.|....
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~   26 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKN   26 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            557899999999999999886544

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.39  E-value=0.00073  Score=56.92  Aligned_cols=22  Identities=32%  Similarity=0.422  Sum_probs=19.6

Q ss_pred             EEEEcCCCChHHHHHHHHHhCC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      +.|.||+||||||+.+.|+..+
T Consensus         7 I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            5699999999999999998755

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.38  E-value=0.00028  Score=60.59  Aligned_cols=23  Identities=35%  Similarity=0.388  Sum_probs=19.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHhCC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      -..|+|+|||||||++++|.-.+
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            35688999999999999997544

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.36  E-value=0.00096  Score=58.10  Aligned_cols=27  Identities=22%  Similarity=0.338  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ..|+-+.|+||+||||||+.+.|+..+
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            357889999999999999999998755

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.36  E-value=0.0008  Score=56.58  Aligned_cols=23  Identities=30%  Similarity=0.286  Sum_probs=20.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHhCC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      -+.|.|++|||||||++.|...+
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            57899999999999999998765

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.29  E-value=0.00077  Score=58.61  Aligned_cols=25  Identities=20%  Similarity=0.278  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      |..+.|.||+||||||+.+.|+..+
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            5568999999999999999998755

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.22  E-value=0.0016  Score=63.70  Aligned_cols=38  Identities=26%  Similarity=0.378  Sum_probs=17.6

Q ss_pred             CcEEEeeCCC-CCCH---HHHHHHHHHHHHHHhCCc--EEEEec
Q 012882          158 ASILCFDEIQ-TVDV---FAIVALSGIVSRLLSTGT--VLVATS  195 (454)
Q Consensus       158 p~lL~LDEp~-~lD~---~~a~~L~~ll~~L~~~G~--vlV~Th  195 (454)
                      +-||++||.+ .+..   ...+.+..+|.-+..+|-  +|-+|+
T Consensus       116 ~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~~tT  159 (387)
T d1qvra2         116 EVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATT  159 (387)
T ss_dssp             SEEEEECCC-------------------HHHHHTTCCCEEEEEC
T ss_pred             ceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhCCCcceeeecC
Confidence            4579999998 3332   224677888888888886  555554

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.22  E-value=0.00098  Score=57.91  Aligned_cols=23  Identities=22%  Similarity=0.179  Sum_probs=19.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHhCC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      -+.|+||+||||||+.+.|+..+
T Consensus         5 riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           5 RAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            36688999999999999998754

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.17  E-value=0.001  Score=56.58  Aligned_cols=25  Identities=28%  Similarity=0.445  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      |.+.|+|++||||||+.++|+..+.
T Consensus         1 k~I~liG~~GsGKsTi~k~La~~l~   25 (161)
T d1viaa_           1 KNIVFIGFMGSGKSTLARALAKDLD   25 (161)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhC
Confidence            4588999999999999999988763

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.15  E-value=0.0021  Score=63.14  Aligned_cols=27  Identities=26%  Similarity=0.415  Sum_probs=22.5

Q ss_pred             CCeE-EEEEcCCCChHHHHHHHHHhCCC
Q 012882           42 APKG-LYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        42 ~p~G-l~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .|+| +.+.||.||||||+|.++...+.
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence            4677 55669999999999999988764

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.00096  Score=57.52  Aligned_cols=26  Identities=23%  Similarity=0.202  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .|.-++|.|++||||||+.+.|+..+
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l   43 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYL   43 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            35668899999999999999998654

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.10  E-value=0.0016  Score=56.70  Aligned_cols=27  Identities=15%  Similarity=0.263  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      +..+-+.|+||+||||||+.+.|+..+
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            345678999999999999999998866

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.02  E-value=0.0014  Score=55.94  Aligned_cols=24  Identities=21%  Similarity=0.324  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      +.++|+|++||||||+.+.|+..+
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHh
Confidence            458899999999999999998766

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.99  E-value=0.0021  Score=55.37  Aligned_cols=26  Identities=23%  Similarity=0.417  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      +.|.-+.++|++||||||+++.+...
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            46789999999999999999988553

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=95.99  E-value=0.025  Score=50.07  Aligned_cols=42  Identities=14%  Similarity=0.139  Sum_probs=30.1

Q ss_pred             cCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 012882          156 RGASILCFDEIQ--TVDVFAIVALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       156 ~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      .+.+++++|=+.  ..|......+.++.+.....-+++|...+.
T Consensus        91 ~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~  134 (207)
T d1ls1a2          91 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT  134 (207)
T ss_dssp             HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred             ccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEecccc
Confidence            578999999998  588888888877776654333456665554

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0019  Score=56.09  Aligned_cols=25  Identities=20%  Similarity=0.324  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      |.-+.|.||+||||||..+.|+..+
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            5678999999999999999998755

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.93  E-value=0.0017  Score=56.57  Aligned_cols=23  Identities=22%  Similarity=0.540  Sum_probs=20.3

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      |.|+||+|||||||++.|....|
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            78999999999999999977543

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.033  Score=50.33  Aligned_cols=23  Identities=26%  Similarity=0.141  Sum_probs=18.8

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      +.-..|+|++|+|||||+-.|+-
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHH
Confidence            45577999999999999877654

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.89  E-value=0.002  Score=54.55  Aligned_cols=24  Identities=21%  Similarity=0.189  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      |-+.|.|++||||||+.+.|+..+
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l   25 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNL   25 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            568899999999999999998765

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.88  E-value=0.0023  Score=62.07  Aligned_cols=29  Identities=24%  Similarity=0.297  Sum_probs=25.8

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .+.++++.|+||+|+||||+.+++++.+.
T Consensus       151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         151 IPKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            35668999999999999999999999774

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.83  E-value=0.0083  Score=55.49  Aligned_cols=43  Identities=21%  Similarity=0.280  Sum_probs=28.1

Q ss_pred             cccchhhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           22 YLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      .+.|+++..+++.-...  .....+.|+||+|+|||+++.-|+..
T Consensus        20 ~igRd~Ei~~l~~iL~r--~~k~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          20 LIGREKELERAIQVLCR--RRKNNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             CCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccChHHHHHHHHHHHhc--CccCCcEEECCCCCcHHHHHHHHHHH
Confidence            34556555443221111  23468899999999999999998753

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.82  E-value=0.0027  Score=54.48  Aligned_cols=26  Identities=27%  Similarity=0.164  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .|--|+|.|++|||||||.+.|...+
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~~l   46 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQTL   46 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            45668999999999999999997654

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.82  E-value=0.0039  Score=60.12  Aligned_cols=42  Identities=12%  Similarity=0.322  Sum_probs=37.3

Q ss_pred             cCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCc-EEEEecCC
Q 012882          156 RGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGT-VLVATSNR  197 (454)
Q Consensus       156 ~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~-vlV~ThN~  197 (454)
                      .+++++|||||. .||+..+..+.++|..+...+. +||+|||.
T Consensus       353 ~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~  396 (427)
T d1w1wa_         353 QPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN  396 (427)
T ss_dssp             SCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCH
Confidence            677899999999 7999999999999998866666 99999984

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=95.82  E-value=0.02  Score=50.93  Aligned_cols=46  Identities=15%  Similarity=0.131  Sum_probs=30.3

Q ss_pred             cCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHhC------CcEEEEecCCCccc
Q 012882          156 RGASILCFDEIQ--TVDVFAIVALSGIVSRLLST------GTVLVATSNRAPWD  201 (454)
Q Consensus       156 ~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~~------G~vlV~ThN~~P~d  201 (454)
                      ++.+++++|=+.  ..|.....+|..+.+.....      -.++|......+++
T Consensus        90 ~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~  143 (211)
T d2qy9a2          90 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNA  143 (211)
T ss_dssp             TTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHH
T ss_pred             cCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcch
Confidence            578999999998  37777777777777666422      12566665543333

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=95.79  E-value=0.027  Score=50.11  Aligned_cols=28  Identities=25%  Similarity=0.331  Sum_probs=21.8

Q ss_pred             CCCCCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           39 APPAPKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        39 ~~~~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      ++..|.-+.|+||+|+||||.+-=|+..
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~   34 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLAKM   34 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3457888999999999999986555543

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.78  E-value=0.0023  Score=55.71  Aligned_cols=26  Identities=23%  Similarity=0.319  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .|+-+.|+||+||||||+.+.|+...
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999998865

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.75  E-value=0.0022  Score=54.76  Aligned_cols=22  Identities=32%  Similarity=0.368  Sum_probs=19.9

Q ss_pred             EEEEcCCCChHHHHHHHHHhCC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      +.|+||+||||||+.+.|+..+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999997755

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.74  E-value=0.0023  Score=55.98  Aligned_cols=21  Identities=29%  Similarity=0.602  Sum_probs=19.0

Q ss_pred             EEEEcCCCChHHHHHHHHHhC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~   66 (454)
                      +.|+||+|+|||||++.|...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998764

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=95.69  E-value=0.028  Score=49.98  Aligned_cols=26  Identities=23%  Similarity=0.223  Sum_probs=16.5

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      ..|.-+.|+||+|+||||.+-=|+..
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~   35 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYF   35 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            46788999999999999985555443

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.63  E-value=0.0022  Score=63.83  Aligned_cols=28  Identities=25%  Similarity=0.425  Sum_probs=25.5

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      -.|+++.|+||+|||||.|++.|+..+.
T Consensus        47 i~ksNILliGPTGvGKTlLAr~LAk~l~   74 (443)
T d1g41a_          47 VTPKNILMIGPTGVGKTEIARRLAKLAN   74 (443)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             cccccEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999999999764

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.60  E-value=0.0031  Score=53.45  Aligned_cols=25  Identities=36%  Similarity=0.388  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      |+ +.|+|++||||||+.++|+..+.
T Consensus         2 p~-IvliG~~G~GKSTig~~La~~l~   26 (165)
T d2iyva1           2 PK-AVLVGLPGSGKSTIGRRLAKALG   26 (165)
T ss_dssp             CS-EEEECSTTSSHHHHHHHHHHHHT
T ss_pred             Cc-EEEECCCCCCHHHHHHHHHHHhC
Confidence            56 55779999999999999988663

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.56  E-value=0.0027  Score=60.58  Aligned_cols=27  Identities=26%  Similarity=0.359  Sum_probs=24.7

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCCCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGATEG   69 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l~~   69 (454)
                      ++++.+.|+.||||||||++|.+.+|+
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~i~~  192 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEFIPK  192 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred             CCCEEEEeeccccchHHHHHHhhhccc
Confidence            467999999999999999999999874

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.0033  Score=54.49  Aligned_cols=25  Identities=24%  Similarity=0.384  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      |-+.|+||+|+|||||++.|....|
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~~   28 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKHP   28 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhCC
Confidence            5689999999999999999876443

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.52  E-value=0.0035  Score=53.03  Aligned_cols=25  Identities=32%  Similarity=0.341  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      +-+.+.|.+|||||||+..|...+.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~   26 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAV   26 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3567999999999999998877653

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=95.51  E-value=0.0031  Score=54.23  Aligned_cols=22  Identities=27%  Similarity=0.314  Sum_probs=20.2

Q ss_pred             EEEEcCCCChHHHHHHHHHhCC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      +.|+||+||||||+.+.|+..+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6799999999999999998865

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.47  E-value=0.0024  Score=59.35  Aligned_cols=23  Identities=26%  Similarity=0.339  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      +-..|+|||||||||++++|.-.
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~~~   47 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIKWV   47 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHHHT
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            45689999999999999999543

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.43  E-value=0.0035  Score=53.78  Aligned_cols=23  Identities=22%  Similarity=0.222  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHhCC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      -+.|.||+||||||+.+.|+..+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36799999999999999998765

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.41  E-value=0.0038  Score=55.39  Aligned_cols=25  Identities=16%  Similarity=0.238  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ++-++|+||+|+|||||++.|....
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            3558899999999999999987644

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=95.41  E-value=0.032  Score=49.40  Aligned_cols=46  Identities=15%  Similarity=0.123  Sum_probs=31.6

Q ss_pred             cCCcEEEeeCCC--CCCHHHHHHHHHHHHHHHh------CCcEEEEecCCCccc
Q 012882          156 RGASILCFDEIQ--TVDVFAIVALSGIVSRLLS------TGTVLVATSNRAPWD  201 (454)
Q Consensus       156 ~~p~lL~LDEp~--~lD~~~a~~L~~ll~~L~~------~G~vlV~ThN~~P~d  201 (454)
                      .+.+++++|=+.  -.|......+..+.+....      .-+++|+..+..+++
T Consensus        87 ~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~  140 (207)
T d1okkd2          87 RGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNG  140 (207)
T ss_dssp             HTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHH
T ss_pred             CCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchH
Confidence            468999999998  4787777777776665531      123777777665555

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=95.37  E-value=0.0039  Score=54.03  Aligned_cols=22  Identities=18%  Similarity=0.353  Sum_probs=20.4

Q ss_pred             EEEEEcCCCChHHHHHHHHHhC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      -++|+|++|+|||||++.|.|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            4999999999999999999984

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.29  E-value=0.0033  Score=60.58  Aligned_cols=40  Identities=8%  Similarity=0.091  Sum_probs=27.9

Q ss_pred             EEEEcCCCCCCcCCchhhhhhhhhHhhhhhcCceEEEEecCC
Q 012882          324 TVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLFCSAASS  365 (454)
Q Consensus       324 ti~i~~VP~l~~~~~~~arRFi~lID~lYe~~~kl~~~a~~~  365 (454)
                      .++++.|= -.+ +...+++++.+|+.+-..++.++|+.--|
T Consensus       357 ililDE~d-~~L-d~~~~~~~~~~l~~~~~~~~Q~I~iTH~~  396 (427)
T d1w1wa_         357 FFVLDEVD-AAL-DITNVQRIAAYIRRHRNPDLQFIVISLKN  396 (427)
T ss_dssp             EEEESSTT-TTC-CHHHHHHHHHHHHHHCBTTBEEEEECSCH
T ss_pred             EEEEeCCC-CCC-CHHHHHHHHHHHHHHhCCCCEEEEEeCCH
Confidence            46777662 222 34457889999988877788888877544

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=95.27  E-value=0.0043  Score=51.16  Aligned_cols=20  Identities=20%  Similarity=0.258  Sum_probs=18.4

Q ss_pred             EEEEcCCCChHHHHHHHHHh
Q 012882           46 LYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g   65 (454)
                      +.|+|++|+|||||++.|.+
T Consensus         3 ivlvG~~~vGKSsLi~~l~~   22 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKL   22 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            67999999999999999875

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.0045  Score=54.49  Aligned_cols=26  Identities=19%  Similarity=0.169  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      |--|+|.|++||||||+.+.|...+.
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            55689999999999999999977653

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=95.24  E-value=0.0041  Score=55.31  Aligned_cols=22  Identities=36%  Similarity=0.445  Sum_probs=19.3

Q ss_pred             EEEEcCCCChHHHHHHHHHhCC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      +.+.|++|||||||++.|....
T Consensus         3 i~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           3 VVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Confidence            6799999999999999997544

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=95.23  E-value=0.0048  Score=52.35  Aligned_cols=25  Identities=20%  Similarity=0.169  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      |-+.|.|++||||||+++.|+..+.
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3467889999999999999988764

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.21  E-value=0.0039  Score=53.14  Aligned_cols=22  Identities=23%  Similarity=0.382  Sum_probs=20.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHhC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      -|.|+|++|+|||||++.|.|.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999984

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.21  E-value=0.0042  Score=53.10  Aligned_cols=22  Identities=18%  Similarity=0.220  Sum_probs=19.7

Q ss_pred             EEEEcCCCChHHHHHHHHHhCC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      +.|.||+||||||+.+.|+..+
T Consensus         3 I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999998755

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=95.17  E-value=0.0047  Score=53.84  Aligned_cols=24  Identities=21%  Similarity=0.165  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      --+.|+||+||||||+.+.|+..+
T Consensus         7 mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             eeEEEECCCCCCHHHHHHHHHHHH
Confidence            457789999999999999998765

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.16  E-value=0.0047  Score=52.28  Aligned_cols=23  Identities=17%  Similarity=0.342  Sum_probs=19.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHhCC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      -|.|+|++|+|||||++.|.|.-
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998743

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.16  E-value=0.0047  Score=53.00  Aligned_cols=22  Identities=23%  Similarity=0.247  Sum_probs=19.6

Q ss_pred             EEEEcCCCChHHHHHHHHHhCC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      +.|+||+||||||+.+.|+..+
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5688999999999999998755

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.16  E-value=0.0049  Score=50.68  Aligned_cols=21  Identities=33%  Similarity=0.499  Sum_probs=19.4

Q ss_pred             EEEEcCCCChHHHHHHHHHhC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~   66 (454)
                      +.|+|++|+|||||++.|.+.
T Consensus         3 I~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            679999999999999999874

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.15  E-value=0.0059  Score=52.94  Aligned_cols=25  Identities=20%  Similarity=0.228  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      |--+.|+|.+|+|||||.+.|+..+
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l   26 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYL   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            5678899999999999999998755

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=95.12  E-value=0.005  Score=51.04  Aligned_cols=22  Identities=23%  Similarity=0.368  Sum_probs=19.8

Q ss_pred             EEEEcCCCChHHHHHHHHHhCC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      +.|+|.+|+|||||++.|.+.-
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999998753

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.09  E-value=0.0024  Score=60.69  Aligned_cols=25  Identities=20%  Similarity=0.488  Sum_probs=23.2

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .++.|.|++|+|||||++.+.+.+|
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iLp   53 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALLP   53 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CeEEEECCCCccHHHHHHHHHHhCC
Confidence            4699999999999999999999886

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.08  E-value=0.047  Score=47.45  Aligned_cols=33  Identities=24%  Similarity=0.432  Sum_probs=24.5

Q ss_pred             hhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHH
Q 012882           28 KLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMF   63 (454)
Q Consensus        28 ~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll   63 (454)
                      .|+.+++.   ..+++.-+.|+|++|+|||+|+--+
T Consensus        14 ~LD~~l~G---Gi~~G~~~~I~G~~G~GKT~la~~~   46 (242)
T d1tf7a1          14 GFDDISHG---GLPIGRSTLVSGTSGTGKTLFSIQF   46 (242)
T ss_dssp             THHHHTTS---SEETTSEEEEEESTTSSHHHHHHHH
T ss_pred             HHHHhhcC---CCcCCeEEEEEeCCCCCHHHHHHHH
Confidence            36666542   3456778999999999999998544

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.06  E-value=0.0036  Score=52.87  Aligned_cols=23  Identities=30%  Similarity=0.404  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      .-+.|+|++|+|||||++.|.+.
T Consensus        14 ~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          14 GKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            44889999999999999999774

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=95.04  E-value=0.0056  Score=50.99  Aligned_cols=21  Identities=24%  Similarity=0.507  Sum_probs=19.6

Q ss_pred             EEEEcCCCChHHHHHHHHHhC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~   66 (454)
                      +.|+|++|+|||||++.|.|.
T Consensus         4 I~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           4 VVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999875

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.99  E-value=0.0061  Score=53.29  Aligned_cols=23  Identities=26%  Similarity=0.426  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      |.|.|+|++|+|||||++.|.+.
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999874

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=94.95  E-value=0.006  Score=52.17  Aligned_cols=23  Identities=17%  Similarity=0.312  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      =-|+|+|.+|+|||||++.|.|.
T Consensus         9 ~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           9 IKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            34899999999999999999874

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=94.94  E-value=0.0071  Score=52.18  Aligned_cols=24  Identities=29%  Similarity=0.516  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHh
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      .|--++|.|++||||||+.+.|..
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999954

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.87  E-value=0.0039  Score=53.49  Aligned_cols=21  Identities=29%  Similarity=0.357  Sum_probs=19.4

Q ss_pred             EEEEcCCCChHHHHHHHHHhC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~   66 (454)
                      |+|+|++++|||||++.|.|.
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999773

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.84  E-value=0.0065  Score=51.42  Aligned_cols=21  Identities=24%  Similarity=0.532  Sum_probs=19.6

Q ss_pred             EEEEcCCCChHHHHHHHHHhC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~   66 (454)
                      |.|+|.+|+|||||++.|.|.
T Consensus         8 I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           8 IAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999974

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.79  E-value=0.0067  Score=52.63  Aligned_cols=23  Identities=26%  Similarity=0.445  Sum_probs=20.8

Q ss_pred             EEEEEcCCCChHHHHHHHHHhCC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      -|.|+|++|+|||||++.|.+.-
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998753

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=94.75  E-value=0.008  Score=52.54  Aligned_cols=24  Identities=25%  Similarity=0.281  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .-+.|.||+||||||+.+.|+..+
T Consensus         4 piI~I~GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            378888999999999999998865

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.70  E-value=0.0084  Score=51.76  Aligned_cols=28  Identities=32%  Similarity=0.533  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ..|.-++|-|+.||||||+++.|...+.
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3567899999999999999999988764

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=94.64  E-value=0.0073  Score=50.59  Aligned_cols=21  Identities=33%  Similarity=0.597  Sum_probs=19.4

Q ss_pred             EEEEcCCCChHHHHHHHHHhC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~   66 (454)
                      +.|+|++|+|||||++.|.+.
T Consensus         5 i~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHcCC
Confidence            789999999999999999874

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.53  E-value=0.0083  Score=52.73  Aligned_cols=24  Identities=17%  Similarity=0.241  Sum_probs=20.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHhCCC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      -+.|-||+||||||+.++|+..+.
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            367889999999999999988663

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.50  E-value=0.0086  Score=53.93  Aligned_cols=25  Identities=24%  Similarity=0.232  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ++-..|+|++|+|||||++.|.+..
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CCeEEEECCCCCCHHHHHHhhcchh
Confidence            5678999999999999999997754

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.46  E-value=0.0093  Score=50.77  Aligned_cols=22  Identities=23%  Similarity=0.415  Sum_probs=20.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHhC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      -|.|+|.+|+|||||++.|.|.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3899999999999999999985

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.30  E-value=0.0069  Score=51.68  Aligned_cols=21  Identities=29%  Similarity=0.357  Sum_probs=19.6

Q ss_pred             EEEEcCCCChHHHHHHHHHhC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~   66 (454)
                      |+|+|.+|+|||||++.|.|.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            889999999999999999874

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=94.28  E-value=0.01  Score=49.90  Aligned_cols=23  Identities=22%  Similarity=0.281  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      --+.|+|.+|||||||++.|.+.
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            45889999999999999999874

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.26  E-value=0.012  Score=50.15  Aligned_cols=37  Identities=19%  Similarity=0.277  Sum_probs=27.6

Q ss_pred             hhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           27 RKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        27 ~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      +.++.+++.   ..++++-+.|.||+|+|||+|+--|+..
T Consensus        10 ~~LD~ll~G---Gi~~G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          10 KELDKLLQG---GIETGSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             HHHHHHTTT---SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHHhhcC---CCcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence            346777653   3456677899999999999998877653

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=94.12  E-value=0.012  Score=49.76  Aligned_cols=25  Identities=24%  Similarity=0.319  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      ..--+.++|+.|+|||||++.|.+.
T Consensus        15 ~~~kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          15 QEVRILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhcC
Confidence            3455999999999999999999664

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=94.12  E-value=0.015  Score=49.45  Aligned_cols=26  Identities=31%  Similarity=0.470  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ++--++|.|+-|+||||+.+.|+..+
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhc
Confidence            34568999999999999999998765

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=94.04  E-value=0.016  Score=51.33  Aligned_cols=26  Identities=23%  Similarity=0.187  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .+.-+.|.|.+|||||||.+.|...+
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~~~l   48 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELEHQL   48 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56779999999999999999997644

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=93.94  E-value=0.0088  Score=50.48  Aligned_cols=25  Identities=12%  Similarity=0.219  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      ...-|.|+|.+++|||||++.|.+.
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3455999999999999999999774

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=93.89  E-value=0.061  Score=42.61  Aligned_cols=39  Identities=15%  Similarity=0.222  Sum_probs=23.9

Q ss_pred             cCCcEEEeeCCCCCCHHHHHHHHHHHHHHHh-CCc-EEEEec
Q 012882          156 RGASILCFDEIQTVDVFAIVALSGIVSRLLS-TGT-VLVATS  195 (454)
Q Consensus       156 ~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~-~G~-vlV~Th  195 (454)
                      .+.+++|+||.+.++..... ....+..+.. ... +|..|-
T Consensus        97 ~~~~lvIiDEaH~~~~~~~~-~~~~~~~~~~~~~~~~l~lTA  137 (140)
T d1yksa1          97 VNWEVIIMDEAHFLDPASIA-ARGWAAHRARANESATILMTA  137 (140)
T ss_dssp             CCCSEEEETTTTCCSHHHHH-HHHHHHHHHHTTSCEEEEECS
T ss_pred             cceeEEEEccccccChhhHH-HHHHHHHHhhCCCCCEEEEEc
Confidence            67899999999966655432 2334444433 234 666664

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=93.88  E-value=0.017  Score=49.92  Aligned_cols=24  Identities=21%  Similarity=0.252  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHh
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      .++|+.|.|++|+|||||+-.+..
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            469999999999999999887754

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=93.86  E-value=0.015  Score=48.76  Aligned_cols=21  Identities=33%  Similarity=0.384  Sum_probs=18.7

Q ss_pred             EEEEcCCCChHHHHHHHHHhC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~   66 (454)
                      +.|+|+.|+|||||++.|.+.
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            679999999999999988663

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=93.79  E-value=0.014  Score=51.25  Aligned_cols=20  Identities=40%  Similarity=0.637  Sum_probs=18.3

Q ss_pred             EEEEEcCCCChHHHHHHHHH
Q 012882           45 GLYLYGNVGSGKTMLMDMFY   64 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~   64 (454)
                      -++|.|+.||||||+.++|.
T Consensus         4 iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999999985

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.79  E-value=0.015  Score=48.88  Aligned_cols=21  Identities=29%  Similarity=0.341  Sum_probs=19.1

Q ss_pred             EEEEcCCCChHHHHHHHHHhC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~   66 (454)
                      +.|+|++|+|||||++.|.+.
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999998764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.79  E-value=0.015  Score=48.96  Aligned_cols=20  Identities=25%  Similarity=0.438  Sum_probs=18.4

Q ss_pred             EEEEcCCCChHHHHHHHHHh
Q 012882           46 LYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g   65 (454)
                      +.++|+.|+|||||++.|.+
T Consensus         8 i~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999998875

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=93.78  E-value=0.017  Score=49.99  Aligned_cols=24  Identities=25%  Similarity=0.243  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHh
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      .++|+.|.|++|+|||||+-.|..
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            469999999999999999977754

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=93.77  E-value=0.014  Score=55.57  Aligned_cols=26  Identities=23%  Similarity=0.310  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ...-++|.|++|+|||||++.|...+
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            45779999999999999999997644

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.76  E-value=0.016  Score=48.90  Aligned_cols=20  Identities=35%  Similarity=0.660  Sum_probs=18.5

Q ss_pred             EEEEcCCCChHHHHHHHHHh
Q 012882           46 LYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g   65 (454)
                      +.|+|+.|+|||||++.|.+
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999999875

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.69  E-value=0.016  Score=48.45  Aligned_cols=20  Identities=20%  Similarity=0.449  Sum_probs=18.1

Q ss_pred             EEEEcCCCChHHHHHHHHHh
Q 012882           46 LYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g   65 (454)
                      +.|+|++|+|||||++.|.+
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999997764

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.69  E-value=0.017  Score=51.33  Aligned_cols=26  Identities=23%  Similarity=0.505  Sum_probs=23.8

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      ||-+.|=|+-||||||+++.|...+.
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHh
Confidence            78899999999999999999998764

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=93.62  E-value=0.0077  Score=54.46  Aligned_cols=25  Identities=24%  Similarity=0.336  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ++-..|+|++|+|||||++.|.+..
T Consensus        97 ~~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          97 DKTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             cceEEEECCCCccHHHHHHhhccHh
Confidence            5677899999999999999997654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.57  E-value=0.017  Score=48.88  Aligned_cols=20  Identities=35%  Similarity=0.604  Sum_probs=18.4

Q ss_pred             EEEEcCCCChHHHHHHHHHh
Q 012882           46 LYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g   65 (454)
                      +.++|++|+|||||++.+.+
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998865

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.50  E-value=0.017  Score=52.81  Aligned_cols=25  Identities=20%  Similarity=0.387  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      .+--+.|+|.+|+|||||++.|.|.
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCC
Confidence            4567999999999999999999985

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.50  E-value=0.0059  Score=50.76  Aligned_cols=21  Identities=19%  Similarity=0.458  Sum_probs=19.5

Q ss_pred             EEEEcCCCChHHHHHHHHHhC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~   66 (454)
                      +.|+|.+|+|||||++.|.|.
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999884

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.46  E-value=0.019  Score=48.09  Aligned_cols=21  Identities=29%  Similarity=0.441  Sum_probs=19.0

Q ss_pred             EEEEcCCCChHHHHHHHHHhC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~   66 (454)
                      +.|+|+.|+|||+|++.+.+.
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998764

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=93.45  E-value=0.018  Score=49.13  Aligned_cols=23  Identities=26%  Similarity=0.502  Sum_probs=20.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHhCC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .+.|+|.+.+|||||++.|.+..
T Consensus         7 nIaiiG~~naGKSTL~n~L~~~~   29 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTEIA   29 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEEeCCCCcHHHHHHHHHHhc
Confidence            48999999999999999998744

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.44  E-value=0.017  Score=54.72  Aligned_cols=25  Identities=20%  Similarity=0.223  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      ...-++|.|++|+|||||++.|...
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~~   74 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGSL   74 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHHH
Confidence            3466999999999999999999764

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.39  E-value=0.019  Score=48.37  Aligned_cols=20  Identities=35%  Similarity=0.458  Sum_probs=18.4

Q ss_pred             EEEEcCCCChHHHHHHHHHh
Q 012882           46 LYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g   65 (454)
                      +.|+|.+|+|||+|++.+.+
T Consensus         8 i~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            88999999999999998765

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=93.35  E-value=0.025  Score=53.15  Aligned_cols=28  Identities=18%  Similarity=0.231  Sum_probs=24.6

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ...|--|+|-|++||||||+.+.|...+
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~lL  104 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQALL  104 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHHHH
Confidence            3568899999999999999999998765

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.33  E-value=0.02  Score=48.36  Aligned_cols=21  Identities=29%  Similarity=0.521  Sum_probs=18.6

Q ss_pred             EEEEcCCCChHHHHHHHHHhC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~   66 (454)
                      +.++|++|+|||+|++.+.+.
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            679999999999999988753

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.32  E-value=0.02  Score=48.86  Aligned_cols=21  Identities=29%  Similarity=0.496  Sum_probs=19.0

Q ss_pred             EEEEcCCCChHHHHHHHHHhC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~   66 (454)
                      +.|+|+.|+|||||++.|.+.
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            789999999999999998763

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.28  E-value=0.021  Score=47.88  Aligned_cols=20  Identities=30%  Similarity=0.496  Sum_probs=18.2

Q ss_pred             EEEEcCCCChHHHHHHHHHh
Q 012882           46 LYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g   65 (454)
                      +.|+|..|+|||||+..+.+
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            68999999999999998875

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=93.28  E-value=0.024  Score=48.66  Aligned_cols=24  Identities=21%  Similarity=0.250  Sum_probs=20.6

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHh
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      .++|+.|.|++|+|||||+-.+..
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            469999999999999999866654

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.26  E-value=0.02  Score=47.93  Aligned_cols=22  Identities=23%  Similarity=0.323  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCChHHHHHHHHHh
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      .-|.|+|+.|+|||||++.+.+
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3488999999999999999865

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.21  E-value=0.019  Score=50.38  Aligned_cols=36  Identities=25%  Similarity=0.379  Sum_probs=26.7

Q ss_pred             hhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHh
Q 012882           27 RKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        27 ~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      ..|+.+++.   ..+.++-+.|+|++|+|||||+--|+-
T Consensus        21 ~~LD~ll~G---Gi~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          21 KNLDTLLGG---GVETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             HHHHHHHTS---SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             HHHHhhhCC---CCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            346666653   345667799999999999999877653

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.18  E-value=0.015  Score=51.39  Aligned_cols=24  Identities=21%  Similarity=0.099  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      +-+.|-|+-||||||+++.|...+
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~~L   27 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVEAL   27 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            335556999999999999998865

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.15  E-value=0.023  Score=48.49  Aligned_cols=20  Identities=35%  Similarity=0.702  Sum_probs=18.3

Q ss_pred             EEEEcCCCChHHHHHHHHHh
Q 012882           46 LYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g   65 (454)
                      |.|+|..|+|||||++.+.+
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.14  E-value=0.022  Score=47.68  Aligned_cols=21  Identities=33%  Similarity=0.586  Sum_probs=18.8

Q ss_pred             EEEEcCCCChHHHHHHHHHhC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~   66 (454)
                      +.++|.+|+|||||++.+.+.
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999988763

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=93.11  E-value=0.021  Score=50.15  Aligned_cols=21  Identities=33%  Similarity=0.545  Sum_probs=18.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHh
Q 012882           45 GLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      -++|.|+.||||||+.++|..
T Consensus         5 iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH
Confidence            588999999999999999853

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.09  E-value=0.023  Score=47.56  Aligned_cols=20  Identities=30%  Similarity=0.343  Sum_probs=18.3

Q ss_pred             EEEEcCCCChHHHHHHHHHh
Q 012882           46 LYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g   65 (454)
                      +.|+|..|+|||+|++.+.+
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999998875

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.06  E-value=0.022  Score=47.89  Aligned_cols=20  Identities=45%  Similarity=0.670  Sum_probs=18.6

Q ss_pred             EEEEcCCCChHHHHHHHHHh
Q 012882           46 LYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g   65 (454)
                      +.|+|+.|+|||||++.|.+
T Consensus         8 i~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999876

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=93.06  E-value=0.024  Score=54.56  Aligned_cols=28  Identities=25%  Similarity=0.431  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .+|..+.++||.|+|||-|.+.|+..+.
T Consensus        66 ~p~~niLfiGPTGvGKTElAk~LA~~~~   93 (364)
T d1um8a_          66 LSKSNILLIGPTGSGKTLMAQTLAKHLD   93 (364)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCcceeeeCCCCccHHHHHHHHHhhcc
Confidence            3577899999999999999999998764

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.02  E-value=0.036  Score=48.92  Aligned_cols=36  Identities=22%  Similarity=0.298  Sum_probs=27.3

Q ss_pred             hhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHh
Q 012882           27 RKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        27 ~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      ..|+.+++.   ..+.+.-+.|.|++|||||+|.-.|+.
T Consensus        24 ~~LD~~lgG---Gip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          24 QEFDKLLGG---GIESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             HHHHHHTTS---SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             HHHHHhhcC---CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            346777653   345667789999999999999877764

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.90  E-value=0.018  Score=51.00  Aligned_cols=25  Identities=24%  Similarity=0.507  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      |-+.|-|+-||||||++++|...+.
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHh
Confidence            6688999999999999999998774

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.86  E-value=0.025  Score=47.08  Aligned_cols=20  Identities=35%  Similarity=0.481  Sum_probs=18.4

Q ss_pred             EEEEcCCCChHHHHHHHHHh
Q 012882           46 LYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g   65 (454)
                      +.|+|..|+|||+|++.|.+
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999999875

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.83  E-value=0.027  Score=47.14  Aligned_cols=20  Identities=30%  Similarity=0.639  Sum_probs=18.2

Q ss_pred             EEEEcCCCChHHHHHHHHHh
Q 012882           46 LYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g   65 (454)
                      +.|+|.+|+|||+|++.|.+
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999988875

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.78  E-value=0.028  Score=47.21  Aligned_cols=22  Identities=36%  Similarity=0.631  Sum_probs=19.1

Q ss_pred             EEEEcCCCChHHHHHHHHHhCC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      +.|+|+.|+|||+|++.|.+.-
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEECCCCcCHHHHHHHHhCCc
Confidence            6799999999999999997743

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.76  E-value=0.077  Score=48.50  Aligned_cols=43  Identities=14%  Similarity=0.275  Sum_probs=37.1

Q ss_pred             ccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 012882          155 QRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSNR  197 (454)
Q Consensus       155 ~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~  197 (454)
                      ...+.++++|||. .|++.....+.++|....+...+||+||+.
T Consensus       239 ~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp  282 (308)
T d1e69a_         239 IKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNK  282 (308)
T ss_dssp             TSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCT
T ss_pred             hccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCH
Confidence            3678999999999 899999999999999887543499999985

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.75  E-value=0.028  Score=47.03  Aligned_cols=20  Identities=35%  Similarity=0.582  Sum_probs=18.5

Q ss_pred             EEEEcCCCChHHHHHHHHHh
Q 012882           46 LYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g   65 (454)
                      +.|+|..|+|||||++.|.+
T Consensus         7 i~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999875

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.72  E-value=0.028  Score=47.47  Aligned_cols=22  Identities=36%  Similarity=0.690  Sum_probs=19.6

Q ss_pred             EEEEcCCCChHHHHHHHHHhCC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      +.|+|..|+|||+|++.|.+.-
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCc
Confidence            7899999999999999998643

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.62  E-value=0.028  Score=47.54  Aligned_cols=22  Identities=27%  Similarity=0.292  Sum_probs=19.2

Q ss_pred             EEEEEcCCCChHHHHHHHHHhC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      -+.|+|+.|+|||+|+..+.+.
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999998763

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.62  E-value=0.03  Score=46.54  Aligned_cols=20  Identities=30%  Similarity=0.463  Sum_probs=18.3

Q ss_pred             EEEEcCCCChHHHHHHHHHh
Q 012882           46 LYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g   65 (454)
                      +.|+|..|+|||||++.+.+
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.54  E-value=0.04  Score=46.83  Aligned_cols=21  Identities=24%  Similarity=0.273  Sum_probs=18.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHh
Q 012882           45 GLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      -+.|+|..|+|||+|++.|.+
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            389999999999999998875

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.47  E-value=0.03  Score=47.12  Aligned_cols=20  Identities=35%  Similarity=0.730  Sum_probs=18.4

Q ss_pred             EEEEcCCCChHHHHHHHHHh
Q 012882           46 LYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g   65 (454)
                      +.|+|..|+|||||++.+.+
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998865

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.41  E-value=0.033  Score=46.92  Aligned_cols=20  Identities=35%  Similarity=0.630  Sum_probs=18.1

Q ss_pred             EEEEcCCCChHHHHHHHHHh
Q 012882           46 LYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g   65 (454)
                      +.++|++|+|||||++.+.+
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999987765

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.36  E-value=0.032  Score=48.19  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=19.6

Q ss_pred             EEEEcCCCChHHHHHHHHHhCC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      +.|-|.-||||||+++.|...+
T Consensus         3 I~ieG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           3 IAIEGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            5688999999999999998765

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.31  E-value=0.035  Score=46.61  Aligned_cols=21  Identities=33%  Similarity=0.626  Sum_probs=18.9

Q ss_pred             EEEEcCCCChHHHHHHHHHhC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~   66 (454)
                      +.|+|+.|+|||+|++-+.+.
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999998763

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.30  E-value=0.035  Score=49.09  Aligned_cols=34  Identities=32%  Similarity=0.459  Sum_probs=25.0

Q ss_pred             hhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHH
Q 012882           28 KLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFY   64 (454)
Q Consensus        28 ~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~   64 (454)
                      .|+.+++.   ..+.++-+.|+||+|+|||||+--++
T Consensus        24 ~LD~ll~G---Glp~G~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          24 SLDKLLGG---GIETQAITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             HHHHHHTS---SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred             HHHHhhcC---CccCCEEEEEEcCCCCCHHHHHHHHH
Confidence            35666553   34556778899999999999977664

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.19  E-value=0.039  Score=48.12  Aligned_cols=25  Identities=24%  Similarity=0.280  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ++-+.|-|+.||||||+++.|...+
T Consensus         2 gkfIviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           2 SKYIVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            3456777999999999999998765

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.18  E-value=0.034  Score=47.93  Aligned_cols=20  Identities=45%  Similarity=0.650  Sum_probs=18.3

Q ss_pred             EEEEcCCCChHHHHHHHHHh
Q 012882           46 LYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g   65 (454)
                      +.|+|+.|+|||||++.|.+
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            78999999999999998875

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.15  E-value=0.036  Score=46.85  Aligned_cols=21  Identities=29%  Similarity=0.510  Sum_probs=19.1

Q ss_pred             EEEEEcCCCChHHHHHHHHHh
Q 012882           45 GLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      -+.++|..|+|||||++.|.+
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999998876

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=92.04  E-value=0.021  Score=48.51  Aligned_cols=23  Identities=22%  Similarity=0.277  Sum_probs=19.8

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      .--+.|+|++|+|||||++.|.+
T Consensus        17 ~~KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          17 ELRILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCC
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            34588999999999999998854

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.01  E-value=0.039  Score=46.19  Aligned_cols=20  Identities=30%  Similarity=0.483  Sum_probs=18.1

Q ss_pred             EEEEcCCCChHHHHHHHHHh
Q 012882           46 LYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g   65 (454)
                      +.|+|..|+|||+|+.-+.+
T Consensus         6 i~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999998765

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.00  E-value=0.047  Score=45.95  Aligned_cols=21  Identities=33%  Similarity=0.419  Sum_probs=19.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHh
Q 012882           45 GLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      -|.|+|..|+|||+|++-+.+
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998775

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.97  E-value=0.079  Score=46.54  Aligned_cols=35  Identities=20%  Similarity=0.279  Sum_probs=26.4

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEec
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFH   80 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~   80 (454)
                      ++-+.+-|+-||||||++++|...+..   ....+++.
T Consensus         3 Gk~I~iEG~DGsGKST~~~~L~~~L~~---~~~~~~~p   37 (214)
T d1tmka_           3 GKLILIEGLDRTGKTTQCNILYKKLQP---NCKLLKFP   37 (214)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHTTT---SEEEEESS
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHHh---CCEEEEEC
Confidence            455788899999999999999987752   23455553

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.96  E-value=0.057  Score=50.10  Aligned_cols=27  Identities=26%  Similarity=0.417  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ..|--|+|-|+.|||||||.+.|...+
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~~~L   51 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIYNHL   51 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHHHHH
Confidence            357789999999999999998876543

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.95  E-value=0.04  Score=46.27  Aligned_cols=20  Identities=35%  Similarity=0.584  Sum_probs=18.4

Q ss_pred             EEEEcCCCChHHHHHHHHHh
Q 012882           46 LYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g   65 (454)
                      +.|+|..|+|||+|++.+.+
T Consensus         7 i~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998876

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.95  E-value=0.04  Score=46.19  Aligned_cols=20  Identities=35%  Similarity=0.459  Sum_probs=18.3

Q ss_pred             EEEEcCCCChHHHHHHHHHh
Q 012882           46 LYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g   65 (454)
                      +.++|..|+|||+|+.-|.+
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998874

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.82  E-value=0.042  Score=45.88  Aligned_cols=21  Identities=33%  Similarity=0.477  Sum_probs=18.7

Q ss_pred             EEEEcCCCChHHHHHHHHHhC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~   66 (454)
                      +.|+|..|+|||+|++-+.+.
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999988653

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=91.79  E-value=0.025  Score=47.63  Aligned_cols=23  Identities=17%  Similarity=0.213  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      --+.|+|++|+|||||++.|.+.
T Consensus        13 ~kIvlvG~~~vGKTSli~rl~~~   35 (173)
T d1e0sa_          13 MRILMLGLDAAGKTTILYKLKLG   35 (173)
T ss_dssp             EEEEEEEETTSSHHHHHHHTTCC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            34889999999999999999753

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.78  E-value=0.026  Score=47.67  Aligned_cols=20  Identities=40%  Similarity=0.580  Sum_probs=8.5

Q ss_pred             EEEEcCCCChHHHHHHHHHh
Q 012882           46 LYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g   65 (454)
                      +.|+|..|+|||||++.|.+
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=91.73  E-value=0.044  Score=46.01  Aligned_cols=21  Identities=29%  Similarity=0.371  Sum_probs=18.6

Q ss_pred             EEEEEcCCCChHHHHHHHHHh
Q 012882           45 GLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      -+.|+|..|+|||||++.+.+
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.66  E-value=0.025  Score=47.69  Aligned_cols=20  Identities=35%  Similarity=0.539  Sum_probs=17.5

Q ss_pred             EEEEcCCCChHHHHHHHHHh
Q 012882           46 LYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g   65 (454)
                      +.++|+.|+|||+|++.+.+
T Consensus         6 i~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC-
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998754

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.45  E-value=0.049  Score=45.61  Aligned_cols=20  Identities=40%  Similarity=0.609  Sum_probs=18.2

Q ss_pred             EEEEcCCCChHHHHHHHHHh
Q 012882           46 LYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g   65 (454)
                      +.++|+.|+|||+|++.+.+
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998755

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.42  E-value=0.05  Score=46.22  Aligned_cols=23  Identities=30%  Similarity=0.440  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      --+.++|+.|+|||+|++.+.+.
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            34889999999999999988763

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.28  E-value=0.05  Score=46.41  Aligned_cols=20  Identities=25%  Similarity=0.338  Sum_probs=18.3

Q ss_pred             EEEEcCCCChHHHHHHHHHh
Q 012882           46 LYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g   65 (454)
                      +.|+|..|+|||+|++.+..
T Consensus        12 i~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            88999999999999988765

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=91.25  E-value=0.058  Score=47.06  Aligned_cols=36  Identities=31%  Similarity=0.342  Sum_probs=26.9

Q ss_pred             hhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHh
Q 012882           27 RKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        27 ~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      ..++.+++.   ..+++.-+.|.|++|+|||+|+--++-
T Consensus        21 ~~LD~ll~G---Gl~~G~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          21 SELDSVLGG---GLESQSVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             HHHHHHTTS---SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             HHHHHhcCC---CccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            346666642   245567788999999999999888764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.25  E-value=0.049  Score=46.26  Aligned_cols=20  Identities=30%  Similarity=0.557  Sum_probs=17.8

Q ss_pred             EEEEcCCCChHHHHHHHHHh
Q 012882           46 LYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g   65 (454)
                      +.|+|..|+|||+|+..+..
T Consensus         5 ivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999987765

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.15  E-value=0.058  Score=52.34  Aligned_cols=25  Identities=24%  Similarity=0.473  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      .|-.|+|+|.+|+|||||+++|.|.
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~   79 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGI   79 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            5678999999999999999999983

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=91.12  E-value=0.055  Score=49.68  Aligned_cols=22  Identities=36%  Similarity=0.545  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHh
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      +.+.|+|..|+|||||+++|..
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~   24 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLY   24 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Confidence            6799999999999999999853

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=91.05  E-value=0.33  Score=44.20  Aligned_cols=39  Identities=26%  Similarity=0.279  Sum_probs=29.1

Q ss_pred             hhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           27 RKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        27 ~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ..++.+++-  -..+.++-+-++||+|||||+|+-.++...
T Consensus        43 ~~lD~~Lg~--GGip~g~itei~G~~~sGKT~l~l~~~~~a   81 (268)
T d1xp8a1          43 LSLDLALGV--GGIPRGRITEIYGPESGGKTTLALAIVAQA   81 (268)
T ss_dssp             HHHHHHTSS--SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHhcC--CCccCceEEEEecCCccchHHHHHHHHHHH
Confidence            457777652  134567779999999999999998877654

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=90.98  E-value=0.25  Score=44.63  Aligned_cols=41  Identities=17%  Similarity=0.207  Sum_probs=25.0

Q ss_pred             ccCCcEEEeeCCCCCCHHHHHHHHHHHHHHHhC-Cc-EEEEecC
Q 012882          155 QRGASILCFDEIQTVDVFAIVALSGIVSRLLST-GT-VLVATSN  196 (454)
Q Consensus       155 ~~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~-G~-vlV~ThN  196 (454)
                      ..+-+++++||.+.++.. ...+..++..+... +. ++..|..
T Consensus        98 ~~~~~~vViDE~H~~~~~-~~~~~~~l~~~~~~~~~~~v~~SAT  140 (305)
T d2bmfa2          98 VPNYNLIIMDEAHFTDPA-SIAARGYISTRVEMGEAAGIFMTAT  140 (305)
T ss_dssp             CCCCSEEEEESTTCCSHH-HHHHHHHHHHHHHHTSCEEEEECSS
T ss_pred             ccceeEEEeeeeeecchh-hHHHHHHHHHhhccccceEEEeecC
Confidence            357889999999966543 33444556555443 44 5555544

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.95  E-value=0.054  Score=46.16  Aligned_cols=18  Identities=28%  Similarity=0.516  Sum_probs=17.0

Q ss_pred             EEEEcCCCChHHHHHHHH
Q 012882           46 LYLYGNVGSGKTMLMDMF   63 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll   63 (454)
                      +.|+|..|+|||||++-+
T Consensus         5 ivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            679999999999999988

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=90.86  E-value=0.065  Score=47.45  Aligned_cols=23  Identities=30%  Similarity=0.394  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      +-++|.|+-||||||+.+.|...
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~   24 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSN   24 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999999654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.80  E-value=0.057  Score=46.19  Aligned_cols=20  Identities=25%  Similarity=0.305  Sum_probs=17.8

Q ss_pred             EEEEcCCCChHHHHHHHHHh
Q 012882           46 LYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g   65 (454)
                      +.|+|+.|+|||+|+..+.+
T Consensus         6 vvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999988765

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=90.75  E-value=0.071  Score=45.88  Aligned_cols=23  Identities=30%  Similarity=0.439  Sum_probs=21.0

Q ss_pred             EEEEEcCCCChHHHHHHHHHhCC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .++++|-+.+|||||++.|.|..
T Consensus         7 nIaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEEeccCCcHHHHHHHHHhhh
Confidence            58999999999999999998854

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=90.70  E-value=0.035  Score=51.64  Aligned_cols=23  Identities=17%  Similarity=0.270  Sum_probs=17.9

Q ss_pred             EEEEEcCCCChHHHHHHHHHhCC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      -++|.|++||||||+.+.|...+
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~   28 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIF   28 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Confidence            69999999999999999987755

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=90.37  E-value=0.098  Score=49.47  Aligned_cols=37  Identities=30%  Similarity=0.415  Sum_probs=27.5

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM   83 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~   83 (454)
                      --|+|=|+-|+||||+++.|...+..   ++..+.+.+.|
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~l~~---~~~v~~~~EPm   43 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASAASG---GSPTLYFPEPM   43 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSGGGC---SSCEEEECCCH
T ss_pred             EEEEEECCccCCHHHHHHHHHHHhcc---CCCeEEEeCch
Confidence            45889999999999999999987742   23344555554

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=90.24  E-value=0.06  Score=47.31  Aligned_cols=28  Identities=21%  Similarity=0.316  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      +....+.|+||+++|||+++.+|.+.+.
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            3458899999999999999999988764

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=90.03  E-value=0.074  Score=47.11  Aligned_cols=21  Identities=38%  Similarity=0.660  Sum_probs=19.5

Q ss_pred             EEEEcCCCChHHHHHHHHHhC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~   66 (454)
                      +.|+|.+.+|||||++.|.+.
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCccHHHHHHHHHhh
Confidence            999999999999999999764

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.85  E-value=0.075  Score=46.85  Aligned_cols=20  Identities=30%  Similarity=0.431  Sum_probs=17.8

Q ss_pred             EEEEEcCCCChHHHHHHHHH
Q 012882           45 GLYLYGNVGSGKTMLMDMFY   64 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~   64 (454)
                      -|.|+|..|+|||||++-+.
T Consensus         8 KilllG~~~vGKTsll~~~~   27 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMR   27 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            47899999999999999874

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.81  E-value=0.084  Score=48.62  Aligned_cols=22  Identities=14%  Similarity=0.274  Sum_probs=20.1

Q ss_pred             CeEEEEEcCCCChHHHHHHHHH
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFY   64 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~   64 (454)
                      -+.++|+|..|+|||||+..+.
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll   27 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERIL   27 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHH
Confidence            4789999999999999999984

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.75  E-value=0.097  Score=47.86  Aligned_cols=45  Identities=22%  Similarity=0.311  Sum_probs=29.8

Q ss_pred             cccchhhhhhhccCCC-CCCCCCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           22 YLNRERKLDSLVGRCP-TAPPAPKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        22 ~~~~~~~~~~~~~~~~-~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      ++.|+..+++++..-. .......-+.|+|..|.|||||++.++..
T Consensus        22 ~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          22 CYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHh
Confidence            4457666555433210 01123467899999999999999998864

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=89.63  E-value=0.14  Score=44.34  Aligned_cols=26  Identities=27%  Similarity=0.355  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      .=.++++|.+.+|||||++.|.+...
T Consensus         8 ~ini~iiGhVd~GKSTL~~~L~~~~~   33 (205)
T d2qn6a3           8 EVNIGVVGHVDHGKTTLVQAITGIWT   33 (205)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred             CeEEEEEEccCCcHHHHHHHHHhhhc
Confidence            35799999999999999999988653

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.08  E-value=0.48  Score=39.99  Aligned_cols=42  Identities=24%  Similarity=0.298  Sum_probs=23.4

Q ss_pred             ccCCcEEEeeCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEecC
Q 012882          155 QRGASILCFDEIQ-TVDVFAIVALSGIVSRLLSTGTVLVATSN  196 (454)
Q Consensus       155 ~~~p~lL~LDEp~-~lD~~~a~~L~~ll~~L~~~G~vlV~ThN  196 (454)
                      ..+-+++++||.+ ..+......+...+........++..|..
T Consensus       123 ~~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT  165 (200)
T d1wp9a1         123 LEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTAS  165 (200)
T ss_dssp             TTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESC
T ss_pred             ccccceEEEEehhhhhcchhHHHHHHHHHhcCCCCcEEEEEec
Confidence            3578899999999 44333333333333333333336666654

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=88.87  E-value=0.07  Score=48.55  Aligned_cols=44  Identities=5%  Similarity=0.102  Sum_probs=29.2

Q ss_pred             HhcCCEEEEcCCCCCCcCCchhhhhhhhhHhhhhhcCceEEEEecCChhhhc
Q 012882          319 AHNYHTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLFCSAASSIDDLF  370 (454)
Q Consensus       319 a~~f~ti~i~~VP~l~~~~~~~arRFi~lID~lYe~~~kl~~~a~~~~~~lf  370 (454)
                      ...|+.|+|+..=.++..+       ..++..++..+..+++.. .|=..+|
T Consensus       204 ~~~~~~i~vDE~QD~~~~~-------~~~l~~~~~~~~~~~~~G-D~~Q~Iy  247 (306)
T d1uaaa1         204 QNKIRYLLVDEYQDTNTSQ-------YELVKLLVGSRARFTVVG-DDDQSIY  247 (306)
T ss_dssp             HTTCSEEEESCGGGCBHHH-------HHHHHHHHTTTCCEEEEC-CGGGCCC
T ss_pred             HHHhhHHHHHHHHHhhHHH-------HhhhhhcccCCCcceEee-cCcccee
Confidence            4589999999887776432       235667788888877644 3444455

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.65  E-value=0.11  Score=43.77  Aligned_cols=20  Identities=30%  Similarity=0.368  Sum_probs=18.0

Q ss_pred             EEEEcCCCChHHHHHHHHHh
Q 012882           46 LYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g   65 (454)
                      +.|+|..|+|||+|++-|..
T Consensus         5 ivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            78999999999999998854

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.53  E-value=0.11  Score=43.85  Aligned_cols=20  Identities=30%  Similarity=0.388  Sum_probs=18.2

Q ss_pred             EEEEcCCCChHHHHHHHHHh
Q 012882           46 LYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g   65 (454)
                      +.|+|..|+|||+|+.-|..
T Consensus         5 iv~lG~~~vGKTsll~r~~~   24 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRI   24 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999999864

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=88.47  E-value=0.13  Score=44.92  Aligned_cols=22  Identities=27%  Similarity=0.241  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHh
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      =.++++|.+++|||||++.|..
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~   25 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTY   25 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHHH
Confidence            5689999999999999999864

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.45  E-value=0.29  Score=42.86  Aligned_cols=57  Identities=9%  Similarity=0.231  Sum_probs=47.6

Q ss_pred             hhHHHHHHhcCCEEEEcCCCCCCcCCchhhhhhhhhHhhhhhcCceEEEEecCChhhh
Q 012882          312 AADYIAVAHNYHTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLFCSAASSIDDL  369 (454)
Q Consensus       312 ~aDYl~la~~f~ti~i~~VP~l~~~~~~~arRFi~lID~lYe~~~kl~~~a~~~~~~l  369 (454)
                      ..++...-++.+.++|+||-.+... +....-|..+|+.+++++.++++++..+|.+|
T Consensus        88 ~~~~~~~~~~~dll~iDDi~~i~~~-~~~~~~lf~lin~~~~~~~~iiits~~~p~~l  144 (213)
T d1l8qa2          88 INEFRNMYKSVDLLLLDDVQFLSGK-ERTQIEFFHIFNTLYLLEKQIILASDRHPQKL  144 (213)
T ss_dssp             HHHHHHHHHTCSEEEEECGGGGTTC-HHHHHHHHHHHHHHHHTTCEEEEEESSCGGGC
T ss_pred             hhhHHHHHhhccchhhhhhhhhcCc-hHHHHHHHHHHHHHhhccceEEEecCCcchhc
Confidence            3455666778999999999888643 45555688899999999999999999999998

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=88.15  E-value=0.14  Score=46.84  Aligned_cols=28  Identities=18%  Similarity=0.367  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhCCC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      +....+.|+||.++|||+++++|...+.
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~lg  129 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            3457899999999999999999999873

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=88.14  E-value=0.091  Score=48.29  Aligned_cols=45  Identities=9%  Similarity=0.149  Sum_probs=29.0

Q ss_pred             HHhcCCEEEEcCCCCCCcCCchhhhhhhhhHhhhhhcCceEEEEecCChhhhc
Q 012882          318 VAHNYHTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLFCSAASSIDDLF  370 (454)
Q Consensus       318 la~~f~ti~i~~VP~l~~~~~~~arRFi~lID~lYe~~~kl~~~a~~~~~~lf  370 (454)
                      +...|+.|+|+..-.++..+       ..++..|..++..+++.++ |-..+|
T Consensus       213 ~~~~~~~i~iDE~QD~s~~q-------~~~~~~l~~~~~~~~~~gD-~~Q~I~  257 (318)
T d1pjra1         213 YQYKFQYIHIDEYQDTNRAQ-------YTLVKKLAERFQNICAVGD-ADQSIY  257 (318)
T ss_dssp             HHHHCSEEEESSGGGCCHHH-------HHHHHHHHTTTCCEEEEEC-GGGCCC
T ss_pred             HhhccchhhhHHHHHHHHHH-------HHHHHHHHHhhcceeeecc-cccccc
Confidence            46789999998766554321       3456667888888776553 334444

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=88.08  E-value=0.12  Score=48.82  Aligned_cols=36  Identities=25%  Similarity=0.327  Sum_probs=26.5

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCcccCceEEEechhH
Q 012882           46 LYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM   83 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~l~~~~~~k~rv~f~~f~   83 (454)
                      |+|=|+-|+||||+++.|...+..  .+..-+.+.+.|
T Consensus         8 I~IEG~iGsGKSTl~~~L~~~l~~--~g~~v~~~~EP~   43 (331)
T d1osna_           8 IYLDGAYGIGKTTAAEEFLHHFAI--TPNRILLIGEPL   43 (331)
T ss_dssp             EEEEESSSSCTTHHHHHHHHTTTT--SGGGEEEECCCH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhh--cCCceEEEeCch
Confidence            788999999999999999988752  233344454443

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=86.99  E-value=0.14  Score=47.38  Aligned_cols=22  Identities=14%  Similarity=0.155  Sum_probs=19.3

Q ss_pred             EEEEcCCCChHHHHHHHHHhCC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ++|+|-+-+|||||+++|+|.-
T Consensus         3 v~lvG~pn~GKStlfn~lt~~~   24 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLVD   24 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC--
T ss_pred             EeEECCCCCCHHHHHHHHHCCC
Confidence            7899999999999999998854

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=86.83  E-value=0.28  Score=43.98  Aligned_cols=25  Identities=12%  Similarity=0.098  Sum_probs=20.2

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHh
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      .++.-+.|.|++|+|||||+.-++-
T Consensus        33 ~~G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          33 RGGEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            3456688899999999999877764

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=86.58  E-value=0.16  Score=46.72  Aligned_cols=23  Identities=13%  Similarity=0.112  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      --++|+|-+.+|||||++++++.
T Consensus        11 ~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          11 LKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHCC
Confidence            44999999999999999999975

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=86.41  E-value=0.21  Score=46.16  Aligned_cols=28  Identities=18%  Similarity=0.116  Sum_probs=23.3

Q ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           40 PPAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        40 ~~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ...++-.+|.|+.|+|||+|+..++...
T Consensus        40 igrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          40 IGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             CBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             ccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            3456779999999999999999987643

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=85.51  E-value=0.24  Score=45.09  Aligned_cols=39  Identities=31%  Similarity=0.345  Sum_probs=28.3

Q ss_pred             hhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           27 RKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        27 ~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      ..++.+++.-  ..+.++-+-|+||+|+|||||+-.++...
T Consensus        40 ~~lD~~Lg~G--Gi~~g~itei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          40 LSLDIALGAG--GLPMGRIVEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             HHHHHHTSSS--SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHhcCC--CccCceEEEEecCCCcHHHHHHHHHHHHH
Confidence            4577776521  34566779999999999999987766543

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=85.38  E-value=1.9  Score=39.09  Aligned_cols=26  Identities=15%  Similarity=0.092  Sum_probs=20.4

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .++-++|.|+.|+|||+|+..+.-..
T Consensus        66 ~GQr~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          66 RGQRELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             TTCBCBEEESSSSSHHHHHHHHHHTC
T ss_pred             CCceEeeccCCCCChHHHHHHHHhhh
Confidence            45669999999999999987654433

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=85.36  E-value=0.16  Score=47.84  Aligned_cols=24  Identities=25%  Similarity=0.422  Sum_probs=19.3

Q ss_pred             EEEEEcCCCChHHHHHHHHHhCCC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGATE   68 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~l~   68 (454)
                      -|+|=|+-|+||||+++.|...+.
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC---
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhC
Confidence            378889999999999999987664

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.31  E-value=0.17  Score=47.83  Aligned_cols=23  Identities=22%  Similarity=0.382  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCChHHHHHHHHH
Q 012882           42 APKGLYLYGNVGSGKTMLMDMFY   64 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~ll~   64 (454)
                      .-+.++|+|..|+|||||+++|.
T Consensus        16 ~IRNI~iiGhvd~GKTTL~d~Ll   38 (341)
T d1n0ua2          16 NVRNMSVIAHVDHGKSTLTDSLV   38 (341)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHH
T ss_pred             cCcEEEEEeCCCCcHHHHHHHHH
Confidence            45889999999999999999995

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=85.28  E-value=0.21  Score=47.51  Aligned_cols=20  Identities=25%  Similarity=0.311  Sum_probs=16.4

Q ss_pred             CeEEEEEcCCCChHHHHHHH
Q 012882           43 PKGLYLYGNVGSGKTMLMDM   62 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~l   62 (454)
                      .+-..|.||+|+||||++..
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHH
Confidence            35688999999999998744

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=85.08  E-value=0.23  Score=43.68  Aligned_cols=22  Identities=27%  Similarity=0.410  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCChHHHHHHHHHh
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      =.++++|-+++|||||++.|..
T Consensus         4 iNi~viGHVd~GKTTL~~~Ll~   25 (224)
T d1jnya3           4 LNLIVIGHVDHGKSTLVGRLLM   25 (224)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEEecCCCCHHHHHHHHHH
Confidence            4689999999999999998853

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=85.07  E-value=0.21  Score=45.86  Aligned_cols=25  Identities=24%  Similarity=0.522  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      ..|+ +.++|.-++|||||+++|.|.
T Consensus        23 ~lP~-ivVvG~~ssGKSSliNaLlG~   47 (306)
T d1jwyb_          23 DLPQ-IVVVGSQSSGKSSVLENIVGR   47 (306)
T ss_dssp             CCCE-EEEEECSSSSHHHHHHHHHTS
T ss_pred             CCCe-EEEEeCCCCCHHHHHHHHhCC
Confidence            3454 789999999999999999994

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=84.44  E-value=0.2  Score=48.06  Aligned_cols=22  Identities=27%  Similarity=0.505  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCChHHHHHHHHHh
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      +.++++|++|+|||+++..+..
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHH
Confidence            6699999999999999876543

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.37  E-value=0.29  Score=40.96  Aligned_cols=47  Identities=11%  Similarity=0.170  Sum_probs=29.0

Q ss_pred             cCCcEEEeeCCC---CCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccchh
Q 012882          156 RGASILCFDEIQ---TVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLN  203 (454)
Q Consensus       156 ~~p~lL~LDEp~---~lD~~~a~~L~~ll~~L~~~G~vlV~ThN~~P~dLy  203 (454)
                      .+.++|||||..   ....-+...+.++|... ..+.=+|.|-..+|++|.
T Consensus        93 ~~~dllILDEi~~Ai~~gli~~~~v~~ll~~r-p~~~evVlTGr~~p~~L~  142 (157)
T d1g5ta_          93 PLLDMVVLDELTYMVAYDYLPLEEVISALNAR-PGHQTVIITGRGCHRDIL  142 (157)
T ss_dssp             TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS-CTTCEEEEECSSCCHHHH
T ss_pred             CccCEEeHHHHHHHHHcCCCCHHHHHHHHHhC-CCCCEEEEECCCCCHHHH
Confidence            569999999997   23334444555556542 345655556666666643

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.36  E-value=0.22  Score=45.44  Aligned_cols=25  Identities=24%  Similarity=0.566  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhC
Q 012882           41 PAPKGLYLYGNVGSGKTMLMDMFYGA   66 (454)
Q Consensus        41 ~~p~Gl~L~GpnGsGKTTLm~ll~g~   66 (454)
                      ..|+ |.++|.-++|||||+++|.|.
T Consensus        25 ~~P~-ivvvG~~SsGKSsliNaLlg~   49 (299)
T d2akab1          25 DLPQ-IAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             CCCE-EEEEEBTTSCHHHHHHHHHTS
T ss_pred             CCCe-EEEEcCCCCCHHHHHHHHhCC
Confidence            4454 779999999999999999994

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.24  E-value=0.21  Score=45.75  Aligned_cols=25  Identities=24%  Similarity=0.311  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCChHHHHHHHHHhCC
Q 012882           43 PKGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        43 p~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      -.-|.++||-++||||||+.|+|..
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCC
Confidence            4568899999999999999999854

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.80  E-value=0.35  Score=42.51  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      .-..|.|.-|||||||++-+....
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhcC
Confidence            345678999999999999987754

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=83.01  E-value=0.32  Score=44.20  Aligned_cols=23  Identities=22%  Similarity=0.211  Sum_probs=20.7

Q ss_pred             EEEEEcCCCChHHHHHHHHHhCC
Q 012882           45 GLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        45 Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      -++|+|-+-+|||||++++++.-
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~~   26 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKAG   26 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHTC
T ss_pred             eEEEECCCCCCHHHHHHHHHCCC
Confidence            47999999999999999999754

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=82.94  E-value=0.35  Score=41.72  Aligned_cols=24  Identities=25%  Similarity=0.218  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCChHHHHHHHHHhCC
Q 012882           44 KGLYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        44 ~Gl~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      -.++++|-+++|||||++.|.+.+
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~~~   27 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITKIL   27 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHH
Confidence            468999999999999999987643

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.72  E-value=0.28  Score=43.10  Aligned_cols=21  Identities=19%  Similarity=0.113  Sum_probs=16.8

Q ss_pred             CCeEEEEEcCCCChHHHHHHH
Q 012882           42 APKGLYLYGNVGSGKTMLMDM   62 (454)
Q Consensus        42 ~p~Gl~L~GpnGsGKTTLm~l   62 (454)
                      .++-+.+.+|.|+|||+..-+
T Consensus        57 ~g~~~~i~apTGsGKT~~~~~   77 (237)
T d1gkub1          57 RKESFAATAPTGVGKTSFGLA   77 (237)
T ss_dssp             TTCCEECCCCBTSCSHHHHHH
T ss_pred             CCCCEEEEecCCChHHHHHHH
Confidence            357789999999999976443

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.66  E-value=0.52  Score=42.84  Aligned_cols=37  Identities=27%  Similarity=0.301  Sum_probs=26.8

Q ss_pred             hhhhhhccCCCCCCCCCeEEEEEcCCCChHHHHHHHHHh
Q 012882           27 RKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYG   65 (454)
Q Consensus        27 ~~~~~~~~~~~~~~~~p~Gl~L~GpnGsGKTTLm~ll~g   65 (454)
                      ..++.+++.  -..+.++-+-|+||+|+|||||+-.++.
T Consensus        46 ~~lD~~lg~--gG~~~g~i~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          46 IALDVALGI--GGLPRGRVIEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             HHHHHHTSS--SSBCSSSEEEEECSSSSSHHHHHHHHHH
T ss_pred             HHHHHhhcc--CCcccceeEEEecCCCcHHHHHHHHHHH
Confidence            346666651  1455677799999999999999755544

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=81.40  E-value=0.37  Score=42.51  Aligned_cols=22  Identities=27%  Similarity=0.486  Sum_probs=19.5

Q ss_pred             EEEEcCCCChHHHHHHHHHhCC
Q 012882           46 LYLYGNVGSGKTMLMDMFYGAT   67 (454)
Q Consensus        46 l~L~GpnGsGKTTLm~ll~g~l   67 (454)
                      +.++|-+.+|||||++.|....
T Consensus        12 i~viGHVd~GKSTL~~~Ll~~~   33 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLLHDS   33 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHc
Confidence            8899999999999999996544

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.85  E-value=0.75  Score=37.05  Aligned_cols=34  Identities=24%  Similarity=0.373  Sum_probs=23.2

Q ss_pred             cCCcEEEeeCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEe
Q 012882          156 RGASILCFDEIQTVDVFAIVALSGIVSRLLSTGT-VLVAT  194 (454)
Q Consensus       156 ~~p~lL~LDEp~~lD~~~a~~L~~ll~~L~~~G~-vlV~T  194 (454)
                      .+++++++||.|-.+     .+..++..+.+.|+ |+++.
T Consensus        72 ~~~d~I~IDEaQFf~-----dl~~~~~~~~~~~~~Viv~G  106 (133)
T d1xbta1          72 LGVAVIGIDEGQFFP-----DIVEFCEAMANAGKTVIVAA  106 (133)
T ss_dssp             HTCSEEEESSGGGCT-----THHHHHHHHHHTTCEEEEEC
T ss_pred             cccceEEeehhHHHH-----HHHHHHHHHHhcCCcEEEEE
Confidence            468999999999443     13445566667788 55554