Citrus Sinensis ID: 012883

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450----
MNTIENIDENPNQELLTQPPTQTQNQTQSHSRRPRGFAATAAAAAAAAAANNNSNSNNNNASSGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEPDGTTYRLSNQSQSHHHLHQQMAAAAATTTAAFPVRSVESPLSVKNCSVKASVECQPSVLRIDESLSPASFDSVVIPERDSRGGEFNASTSPINNSVECLEADQLIQDVRAGEHEDDFTGTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGIGEFQIFTAKSTESR
ccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccEEcccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccEEEEEEccEEccccccccHHHHHHHHHHHHHccccEEEEEcEEEHHccccccccccHHHHHHHHHHHHcccEEEEEEEEEcccccccccccccccHHHHHHHccccccEEEccccccccccEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccccccccccEEccccHHHHHcc
cccccccccccccccccccccccccccccccccccccEEcccHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHcHHHHHHHHHHHcccEEcccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccHHHcccccccccccccEEEEcccccccccccccccccccHHHccccccccccccccccccccccccccEEEEcccccEcccccEccHHHHHHHHHHHHHccccEEEEEEEHHHHccccccccccHHHHHHHHHHHHcccEEEEEEEcccEcccccccccEcccHHHHHHHHHcHHHEEEcccccEEEEEEcHHHcccccEccEcHHHHHHHHHHHHHHHcHHHHHcccEEEEEEcccHHHEcccccccHHHcccccccccccccHHHHHHcc
mntienidenpnqelltqpptqtqnqtqshsrrprgFAATAAAAAAAAAAnnnsnsnnnnassgkgkkerEKEKERTKLRERHRRAITSRMLAGLrqygnfplparaDMNDVLAALAREagwtvepdgttyrlsnqsqshHHLHQQMAAAAATttaafpvrsvesplsvkncsvkasvecqpsvlrideslspasfdsvviperdsrggefnastspinnsvecleADQLIQDVrageheddftgtpyIPVYVMLANHVINnfcqlvdpELIRQEISHMKALNVDGVIVNcwwgivegwnpqkyaWSGYRELFNIIREFNLKVQVVMAFHEygandsgdawisLPQWVMEigkgnqdifftdregrrnteclswgvdkervlngrTGIEVYFDFMRSFRTEFDDLFVAGLICAVEiglgpsgelkypslsermgwrypgigefqiftakstesr
mntienidenpnqelltqpptqtqnqtqshSRRPRGFAATAAAAAAAAaannnsnsnnnnassgkgkkerekekertklrerhrraitsrmlaglrqygnFPLPARADMNDVLAALAREAGWTVEPDGTTYRLSNQSQSHHHLHQQMAAAAATTTAAFPVRSVESPLSVKNCSVKASVECQPsvlrideslspasfDSVVIPERDSRGGEFNASTSPINNSVECLEADQLIQDVRAGEHEDDFTGTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQdifftdregrrnteclswgvdkervlngrTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGIGEFQiftakstesr
MNTIENIDENpnqelltqpptqtqnqtqSHSRRPRGFaataaaaaaaaaannnsnsnnnnassGkgkkerekekertklrerhrrAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEPDGTTYRlsnqsqshhhlhqqMaaaaatttaaFPVRSVESPLSVKNCSVKASVECQPSVLRIDESLSPASFDSVVIPERDSRGGEFNASTSPINNSVECLEADQLIQDVRAGEHEDDFTGTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGIGEFQIFTAKSTESR
*****************************************************************************************RMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEPD*******************************************NCSVKASVEC*****************************************VECLEADQLIQDVRAGEHEDDFTGTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGIGEFQIFT*******
**************************************************************************************ITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEPDGT*************************************************************************************************************************VYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGIGEFQIFTAKSTE**
MNTIENIDENPNQELLT****************************************************************RHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEPDGTTYRL**********************AAFPVRSVESPLSVKNCSVKASVECQPSVLRIDESLSPASFDSVVIPERDSRGGEFNASTSPINNSVECLEADQLIQDVRAGEHEDDFTGTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGIGEFQIFTAKSTESR
****************************************************************************TKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEPDGTTY*************************************VKNCSVKASVECQPSVLRIDESLSPASFDSVVIPER****************************************GTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGIGEFQIFTAKSTES*
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNTIENIDENPNQELLTQPPTQTQNQTQSHSRRPRGFAATAAAAAAAAAANNNSNSNNNNASSGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEPDGTTYRLSNQSQSHHHLHQQMAAAAATTTAAFPVRSVESPLSVKNCSVKASVECQPSVLRIDESLSPASFDSVVIPERDSRGGEFNASTSPINNSVECLEADQLIQDVRAGEHEDDFTGTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGIGEFQIFTAKSTESR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query454 2.2.26 [Sep-21-2011]
Q9FH80 689 Beta-amylase 8 OS=Arabido yes no 0.938 0.618 0.648 1e-153
O80831 691 Beta-amylase 7 OS=Arabido no no 0.867 0.570 0.455 1e-105
O65258 542 Beta-amylase 2, chloropla no no 0.482 0.404 0.566 3e-74
Q8L762 577 Beta-amylase 6 OS=Arabido no no 0.453 0.357 0.490 1e-55
O22585 496 Beta-amylase OS=Medicago N/A no 0.453 0.415 0.456 5e-55
P10538 496 Beta-amylase OS=Glycine m no no 0.438 0.401 0.467 9e-55
O65015 496 Beta-amylase OS=Trifolium N/A no 0.438 0.401 0.457 7e-54
P10537 499 Beta-amylase OS=Ipomoea b N/A no 0.438 0.398 0.472 9e-54
O64407 496 Beta-amylase OS=Vigna ung N/A no 0.438 0.401 0.452 5e-53
P25853 498 Beta-amylase 5 OS=Arabido no no 0.438 0.399 0.445 8e-51
>sp|Q9FH80|BAM8_ARATH Beta-amylase 8 OS=Arabidopsis thaliana GN=BAM8 PE=2 SV=1 Back     alignment and function desciption
 Score =  542 bits (1396), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 301/464 (64%), Positives = 348/464 (75%), Gaps = 38/464 (8%)

Query: 9   ENPNQELLTQP---PTQTQNQTQSHSRRPRGFAATAAAAAAAAAANNNSNSN-------- 57
           ++PN + +  P   P + +NQ QS  RRPRGFAA AAAA+ A   N+ +N N        
Sbjct: 15  QDPNLDPIPDPDQFPNRNRNQPQS--RRPRGFAAAAAAASIAPTENDVNNGNIAGIGGGE 72

Query: 58  ----NNNASSGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVL 113
                     GKGK+EREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDV+
Sbjct: 73  GSSGGGGGGGGKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVI 132

Query: 114 AALAREAGWTVEPDGTTYRLSNQSQSHHHLHQQMAAAAATTTAAFPVRSVESPLS---VK 170
           AALAREAGW+VE DGTTYR   QSQ  +H+ Q            FP RS+ESPLS   +K
Sbjct: 133 AALAREAGWSVEADGTTYR---QSQQPNHVVQ------------FPTRSIESPLSSSTLK 177

Query: 171 NCSVKASVECQP-SVLRIDESLSPASFDSVVIPERDSRGGEFNASTSPINNSVECLEADQ 229
           NC+ KA++E Q  SVLR DE L+P S DS+ I E D  G     S SPI  SV CLEA+Q
Sbjct: 178 NCA-KAAIESQQHSVLRNDEKLAPVSLDSIGIAESDHPGNGRYTSVSPIT-SVGCLEANQ 235

Query: 230 LIQDVRAGEHEDDFTGTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIV 289
           LIQDV + E  +DFT + Y+PVY ML   +I+NF QLVDPE +RQE+S+MK+LNVDGV++
Sbjct: 236 LIQDVHSAEQCNDFTESFYVPVYAMLPVGIIDNFGQLVDPEGVRQELSYMKSLNVDGVVI 295

Query: 290 NCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVM 349
           +CWWGIVEGWNPQKY WSGYRELFN+IR+F LK+QVVMAFHEYG N SG+  ISLPQWV+
Sbjct: 296 DCWWGIVEGWNPQKYVWSGYRELFNLIRDFKLKLQVVMAFHEYGGNASGNVMISLPQWVL 355

Query: 350 EIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAG 409
           +IGK N DIFFTDREGRR+ ECL+W +DKERVL+GRTGIEVYFDFMRSFR+EFDDLFV G
Sbjct: 356 KIGKDNPDIFFTDREGRRSFECLNWSIDKERVLHGRTGIEVYFDFMRSFRSEFDDLFVEG 415

Query: 410 LICAVEIGLGPSGELKYPSLSERMGWRYPGIGEFQIFTAKSTES 453
           LI AVEIGLG SGELKYPS  ERMGW YPGIGEFQ +   S  S
Sbjct: 416 LITAVEIGLGASGELKYPSFPERMGWIYPGIGEFQCYDKYSQLS 459

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 2
>sp|O80831|BAM7_ARATH Beta-amylase 7 OS=Arabidopsis thaliana GN=BAM7 PE=2 SV=2 Back     alignment and function description
>sp|O65258|BAM2_ARATH Beta-amylase 2, chloroplastic OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=2 Back     alignment and function description
>sp|Q8L762|BAM6_ARATH Beta-amylase 6 OS=Arabidopsis thaliana GN=BAM6 PE=2 SV=1 Back     alignment and function description
>sp|O22585|AMYB_MEDSA Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1 Back     alignment and function description
>sp|P10538|AMYB_SOYBN Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3 Back     alignment and function description
>sp|O65015|AMYB_TRIRP Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1 Back     alignment and function description
>sp|P10537|AMYB_IPOBA Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4 Back     alignment and function description
>sp|O64407|AMYB_VIGUN Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=1 Back     alignment and function description
>sp|P25853|BAM5_ARATH Beta-amylase 5 OS=Arabidopsis thaliana GN=BAM5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query454
402171772 677 beta-amylase 7 [Citrus trifoliata] 0.973 0.652 0.950 0.0
296085484 612 unnamed protein product [Vitis vinifera] 0.790 0.586 0.765 1e-169
225427653 670 PREDICTED: beta-amylase 8-like [Vitis vi 0.786 0.532 0.763 1e-168
224074625 701 predicted protein [Populus trichocarpa] 0.944 0.611 0.686 1e-166
356531537 654 PREDICTED: beta-amylase 8-like [Glycine 0.777 0.539 0.731 1e-158
356495270 656 PREDICTED: beta-amylase 8-like [Glycine 0.881 0.609 0.652 1e-156
255557779 668 Beta-amylase, putative [Ricinus communis 0.905 0.615 0.678 1e-154
357484509515 Beta-amylase [Medicago truncatula] gi|35 0.903 0.796 0.658 1e-154
357484507 650 Beta-amylase [Medicago truncatula] gi|35 0.903 0.630 0.658 1e-154
297794735 682 hypothetical protein ARALYDRAFT_356484 [ 0.931 0.620 0.650 1e-152
>gi|402171772|gb|AFQ33619.1| beta-amylase 7 [Citrus trifoliata] Back     alignment and taxonomy information
 Score =  815 bits (2105), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/446 (95%), Positives = 431/446 (96%), Gaps = 4/446 (0%)

Query: 1   MNTIENIDENPNQELLTQPPTQTQNQTQSHSRRPRGFAATAAAAAAAAAANNNSNSNNNN 60
           MNTIENIDENPNQELLTQPPTQTQNQTQSHSRRPRGFAATAAAAAA   +NNN+N+ ++ 
Sbjct: 1   MNTIENIDENPNQELLTQPPTQTQNQTQSHSRRPRGFAATAAAAAANNNSNNNNNNASSG 60

Query: 61  ASSGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREA 120
                  KEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREA
Sbjct: 61  KGK----KEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREA 116

Query: 121 GWTVEPDGTTYRLSNQSQSHHHLHQQMAAAAATTTAAFPVRSVESPLSVKNCSVKASVEC 180
           GWTVEPDGTTYRLSNQSQSHHHLHQQMAAAAATTTAAFPVRSVESPLSVKNCSVKASVEC
Sbjct: 117 GWTVEPDGTTYRLSNQSQSHHHLHQQMAAAAATTTAAFPVRSVESPLSVKNCSVKASVEC 176

Query: 181 QPSVLRIDESLSPASFDSVVIPERDSRGGEFNASTSPINNSVECLEADQLIQDVRAGEHE 240
           QPSVLRIDESLSPASFDSVVIPERDSRGGEFNASTSPINNSVECLEADQLIQDVRAGEHE
Sbjct: 177 QPSVLRIDESLSPASFDSVVIPERDSRGGEFNASTSPINNSVECLEADQLIQDVRAGEHE 236

Query: 241 DDFTGTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWN 300
           DDFTGTPYIPVYVMLANHVINNFCQLVDPEL+RQEIS MKALNVDGVIVNCWWGIVEGWN
Sbjct: 237 DDFTGTPYIPVYVMLANHVINNFCQLVDPELLRQEISDMKALNVDGVIVNCWWGIVEGWN 296

Query: 301 PQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFF 360
           PQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFF
Sbjct: 297 PQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFF 356

Query: 361 TDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGP 420
           TDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGP
Sbjct: 357 TDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGP 416

Query: 421 SGELKYPSLSERMGWRYPGIGEFQIF 446
           S ELKYPSLSERMGWRYPGIGEFQ +
Sbjct: 417 SRELKYPSLSERMGWRYPGIGEFQCY 442

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296085484|emb|CBI29216.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225427653|ref|XP_002270680.1| PREDICTED: beta-amylase 8-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224074625|ref|XP_002304400.1| predicted protein [Populus trichocarpa] gi|222841832|gb|EEE79379.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356531537|ref|XP_003534334.1| PREDICTED: beta-amylase 8-like [Glycine max] Back     alignment and taxonomy information
>gi|356495270|ref|XP_003516502.1| PREDICTED: beta-amylase 8-like [Glycine max] Back     alignment and taxonomy information
>gi|255557779|ref|XP_002519919.1| Beta-amylase, putative [Ricinus communis] gi|223540965|gb|EEF42523.1| Beta-amylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357484509|ref|XP_003612542.1| Beta-amylase [Medicago truncatula] gi|355513877|gb|AES95500.1| Beta-amylase [Medicago truncatula] Back     alignment and taxonomy information
>gi|357484507|ref|XP_003612541.1| Beta-amylase [Medicago truncatula] gi|355513876|gb|AES95499.1| Beta-amylase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297794735|ref|XP_002865252.1| hypothetical protein ARALYDRAFT_356484 [Arabidopsis lyrata subsp. lyrata] gi|297311087|gb|EFH41511.1| hypothetical protein ARALYDRAFT_356484 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query454
TAIR|locus:2158455 689 BMY2 "beta-amylase 2" [Arabido 0.757 0.499 0.682 3.8e-129
TAIR|locus:2050720 691 BAM7 "beta-amylase 7" [Arabido 0.788 0.518 0.470 2e-88
TAIR|locus:2127033 542 BAM2 "beta-amylase 2" [Arabido 0.502 0.420 0.547 2.4e-69
TAIR|locus:2062535 577 BAM6 "beta-amylase 6" [Arabido 0.455 0.358 0.490 1.3e-54
TAIR|locus:2129810 498 BAM5 "beta-amylase 5" [Arabido 0.438 0.399 0.445 4.7e-48
TAIR|locus:2130504 548 CT-BMY "chloroplast beta-amyla 0.433 0.359 0.452 1e-45
TAIR|locus:2076086 575 BAM1 "beta-amylase 1" [Arabido 0.511 0.403 0.362 9.6e-41
TAIR|locus:2162152 531 BAM4 "beta-amylase 4" [Arabido 0.429 0.367 0.398 1.7e-36
TAIR|locus:2180029 536 BMY3 "beta-amylase 3" [Arabido 0.416 0.352 0.361 1.3e-28
TAIR|locus:2037518325 BEH4 "BES1/BZR1 homolog 4" [Ar 0.103 0.144 0.617 3.9e-09
TAIR|locus:2158455 BMY2 "beta-amylase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1250 (445.1 bits), Expect = 3.8e-129, Sum P(2) = 3.8e-129
 Identities = 249/365 (68%), Positives = 284/365 (77%)

Query:    86 AITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEPDGTTYRXXXXXXXXXXXXX 145
             AITSRMLAGLRQYGNFPLPARADMNDV+AALAREAGW+VE DGTTYR             
Sbjct:   105 AITSRMLAGLRQYGNFPLPARADMNDVIAALAREAGWSVEADGTTYRQSQQPNHVVQ--- 161

Query:   146 XMXXXXXXXXXXFPVRSVESPLS---VKNCSVKASVECQP-SVLRIDESLSPASFDSVVI 201
                         FP RS+ESPLS   +KNC+ KA++E Q  SVLR DE L+P S DS+ I
Sbjct:   162 ------------FPTRSIESPLSSSTLKNCA-KAAIESQQHSVLRNDEKLAPVSLDSIGI 208

Query:   202 PERDSRGGEFNASTSPINNSVECLEADQLIQDVRAGEHEDDFTGTPYIPVYVMLANHVIN 261
              E D  G     S SPI  SV CLEA+QLIQDV + E  +DFT + Y+PVY ML   +I+
Sbjct:   209 AESDHPGNGRYTSVSPIT-SVGCLEANQLIQDVHSAEQCNDFTESFYVPVYAMLPVGIID 267

Query:   262 NFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNL 321
             NF QLVDPE +RQE+S+MK+LNVDGV+++CWWGIVEGWNPQKY WSGYRELFN+IR+F L
Sbjct:   268 NFGQLVDPEGVRQELSYMKSLNVDGVVIDCWWGIVEGWNPQKYVWSGYRELFNLIRDFKL 327

Query:   322 KVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERV 381
             K+QVVMAFHEYG N SG+  ISLPQWV++IGK N DIFFTDREGRR+ ECL+W +DKERV
Sbjct:   328 KLQVVMAFHEYGGNASGNVMISLPQWVLKIGKDNPDIFFTDREGRRSFECLNWSIDKERV 387

Query:   382 LNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGIG 441
             L+GRTGIEVYFDFMRSFR+EFDDLFV GLI AVEIGLG SGELKYPS  ERMGW YPGIG
Sbjct:   388 LHGRTGIEVYFDFMRSFRSEFDDLFVEGLITAVEIGLGASGELKYPSFPERMGWIYPGIG 447

Query:   442 EFQIF 446
             EFQ +
Sbjct:   448 EFQCY 452
GO:0000272 "polysaccharide catabolic process" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0016161 "beta-amylase activity" evidence=IEA;ISS;IDA
GO:0043169 "cation binding" evidence=IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA
GO:0005634 "nucleus" evidence=IDA
GO:0048831 "regulation of shoot system development" evidence=IMP
TAIR|locus:2050720 BAM7 "beta-amylase 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127033 BAM2 "beta-amylase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062535 BAM6 "beta-amylase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2129810 BAM5 "beta-amylase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130504 CT-BMY "chloroplast beta-amylase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076086 BAM1 "beta-amylase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162152 BAM4 "beta-amylase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180029 BMY3 "beta-amylase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037518 BEH4 "BES1/BZR1 homolog 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FH80BAM8_ARATH3, ., 2, ., 1, ., 20.64870.93830.6182yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.10.921
3rd Layer3.2.1.20.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.III.1119.1
beta-amylase (EC-3.2.1.2) (650 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query454
PLN02705 681 PLN02705, PLN02705, beta-amylase 0.0
PLN02905 702 PLN02905, PLN02905, beta-amylase 1e-145
PLN02801 517 PLN02801, PLN02801, beta-amylase 2e-75
PLN02803 548 PLN02803, PLN02803, beta-amylase 2e-57
PLN00197 573 PLN00197, PLN00197, beta-amylase; Provisional 1e-47
pfam05687151 pfam05687, DUF822, Plant protein of unknown functi 2e-45
PLN02161 531 PLN02161, PLN02161, beta-amylase 9e-44
pfam01373 399 pfam01373, Glyco_hydro_14, Glycosyl hydrolase fami 1e-38
>gnl|CDD|178307 PLN02705, PLN02705, beta-amylase Back     alignment and domain information 
 Score =  739 bits (1909), Expect = 0.0
 Identities = 327/459 (71%), Positives = 357/459 (77%), Gaps = 24/459 (5%)

Query: 3   TIENIDENPNQELLTQP-PTQTQNQTQSHSRRPRGFAATAAAAAAAAAANNNSNSN---- 57
           T     ++PN + + QP P   +N+ Q  SRRPRGFAATAAAAA A   N+ +N N    
Sbjct: 9   TTTTGSQDPNLDPIPQPDPFPNRNRNQPQSRRPRGFAATAAAAAIAPTENDVNNGNISSG 68

Query: 58  NNNASSGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALA 117
                 GKGK+EREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALA
Sbjct: 69  GGGGGGGKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALA 128

Query: 118 REAGWTVEPDGTTYRLSNQSQSHHHLHQQMAAAAATTTAAFPVRSVESPLS---VKNCSV 174
           REAGWTVE DGTTYR   QS    H+             +FPVRSVESPLS   +KNC+ 
Sbjct: 129 REAGWTVEADGTTYR---QSPQPSHV------------GSFPVRSVESPLSSSTLKNCAK 173

Query: 175 KASVECQPSVLRIDESLSPASFDSVVIPERDSRGGEFNASTSPINNSVECLEADQLIQDV 234
            A    Q SVLRIDESLSP S DSVVI E D  G     STSPI  SV CLEADQLIQDV
Sbjct: 174 AAIESQQHSVLRIDESLSPVSLDSVVIAESDHPGNGRYTSTSPIT-SVGCLEADQLIQDV 232

Query: 235 RAGEHEDDFTGTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWG 294
            +GEHE+DFT T Y+PVYVMLA  +INNFCQLVDPE +RQE+SHMK+LNVDGV+V+CWWG
Sbjct: 233 HSGEHENDFTETFYVPVYVMLAVGIINNFCQLVDPEGVRQELSHMKSLNVDGVVVDCWWG 292

Query: 295 IVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKG 354
           IVEGWNPQKY WSGYRELFNIIREF LK+QVVMAFHEYG N SG+  ISLPQWV+EIGK 
Sbjct: 293 IVEGWNPQKYVWSGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISLPQWVLEIGKD 352

Query: 355 NQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAV 414
           NQDIFFTDREGRRNTECLSW +DKERVL GRTGIEVYFDFMRSFR+EFDDLFV GLI AV
Sbjct: 353 NQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLFVEGLITAV 412

Query: 415 EIGLGPSGELKYPSLSERMGWRYPGIGEFQIFTAKSTES 453
           EIGLG SGELKYPS  ERMGW YPGIGEFQ +   S ++
Sbjct: 413 EIGLGASGELKYPSFPERMGWIYPGIGEFQCYDKYSQQN 451

Length = 681
>gnl|CDD|178493 PLN02905, PLN02905, beta-amylase Back     alignment and domain information
>gnl|CDD|215431 PLN02801, PLN02801, beta-amylase Back     alignment and domain information
>gnl|CDD|178400 PLN02803, PLN02803, beta-amylase Back     alignment and domain information
>gnl|CDD|215099 PLN00197, PLN00197, beta-amylase; Provisional Back     alignment and domain information
>gnl|CDD|218693 pfam05687, DUF822, Plant protein of unknown function (DUF822) Back     alignment and domain information
>gnl|CDD|177820 PLN02161, PLN02161, beta-amylase Back     alignment and domain information
>gnl|CDD|216462 pfam01373, Glyco_hydro_14, Glycosyl hydrolase family 14 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 454
PLN02705 681 beta-amylase 100.0
PLN02905 702 beta-amylase 100.0
PLN00197 573 beta-amylase; Provisional 100.0
PLN02803 548 beta-amylase 100.0
PLN02801 517 beta-amylase 100.0
PLN02161 531 beta-amylase 100.0
PF01373 402 Glyco_hydro_14: Glycosyl hydrolase family 14; Inte 100.0
PF05687150 DUF822: Plant protein of unknown function (DUF822) 100.0
PF02449 374 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR0 98.8
PF01301 319 Glyco_hydro_35: Glycosyl hydrolases family 35; Int 98.12
PLN03059 840 beta-galactosidase; Provisional 97.2
PF00150281 Cellulase: Cellulase (glycosyl hydrolase family 5) 97.04
TIGR03356 427 BGL beta-galactosidase. 96.78
PLN02705 681 beta-amylase 96.33
COG1874 673 LacA Beta-galactosidase [Carbohydrate transport an 95.96
PF00232 455 Glyco_hydro_1: Glycosyl hydrolase family 1; InterP 95.44
cd03465330 URO-D_like The URO-D _like protein superfamily inc 95.27
KOG0496 649 consensus Beta-galactosidase [Carbohydrate transpo 94.93
smart00633 254 Glyco_10 Glycosyl hydrolase family 10. 94.75
PRK09852 474 cryptic 6-phospho-beta-glucosidase; Provisional 94.62
PF14871132 GHL6: Hypothetical glycosyl hydrolase 6 93.63
PRK15014 477 6-phospho-beta-glucosidase BglA; Provisional 92.76
PF02638 311 DUF187: Glycosyl hydrolase like GH101; InterPro: I 92.13
TIGR01233 467 lacG 6-phospho-beta-galactosidase. This enzyme is 90.16
TIGR01463340 mtaA_cmuA methyltransferase, MtaA/CmuA family. Thi 90.08
PRK13511 469 6-phospho-beta-galactosidase; Provisional 89.47
cd00465306 URO-D_CIMS_like The URO-D_CIMS_like protein superf 88.89
PRK02412253 aroD 3-dehydroquinate dehydratase; Provisional 88.68
PRK01060281 endonuclease IV; Provisional 87.78
PF10566273 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: 87.69
PLN02814 504 beta-glucosidase 87.24
cd03311332 CIMS_C_terminal_like CIMS - Cobalamine-independent 86.94
cd03307326 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, al 86.75
PRK13111258 trpA tryptophan synthase subunit alpha; Provisiona 86.34
PF00331 320 Glyco_hydro_10: Glycosyl hydrolase family 10; Inte 86.11
cd03308378 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized pro 85.71
PRK09593 478 arb 6-phospho-beta-glucosidase; Reviewed 85.59
PRK09589 476 celA 6-phospho-beta-glucosidase; Reviewed 85.29
PF00128 316 Alpha-amylase: Alpha amylase, catalytic domain; In 85.2
TIGR01093228 aroD 3-dehydroquinate dehydratase, type I. Type II 84.51
PRK06252339 methylcobalamin:coenzyme M methyltransferase; Vali 84.21
PLN02849 503 beta-glucosidase 83.69
PLN02998 497 beta-glucosidase 82.98
PF01208343 URO-D: Uroporphyrinogen decarboxylase (URO-D); Int 82.79
PRK08508279 biotin synthase; Provisional 82.06
PF01261213 AP_endonuc_2: Xylose isomerase-like TIM barrel; In 81.89
PF01487224 DHquinase_I: Type I 3-dehydroquinase; InterPro: IP 81.81
PLN02591250 tryptophan synthase 81.48
PLN02361 401 alpha-amylase 80.45
PHA0044259 host recBCD nuclease inhibitor 80.41
PRK11572248 copper homeostasis protein CutC; Provisional 80.31
>PLN02705 beta-amylase Back     alignment and domain information 
Probab=100.00  E-value=9.4e-180  Score=1386.79  Aligned_cols=410  Identities=77%  Similarity=1.236  Sum_probs=397.3

Q ss_pred             CCCCCCCCCCcchhhhhHHHHHHhhcCC----CCCCCCCCCCCCCccchhHHHHhHHHHHhhhhHHHHHHhhhhhcCCCC
Q 012883           27 TQSHSRRPRGFAATAAAAAAAAAANNNS----NSNNNNASSGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFP  102 (454)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~r~~erE~~k~RER~Rraia~ki~aGlr~~g~~~  102 (454)
                      +|||+|||||||+||||+++|+..++++    .++|+|||+|+++|+|++||||||+|||||||||+|||||||+||||+
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~rer~rrai~~ki~aglr~~g~~~  113 (681)
T PLN02705         34 NQPQSRRPRGFAATAAAAAIAPTENDVNNGNISSGGGGGGGGKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFP  113 (681)
T ss_pred             CCCccCCCcchhhhhcccccCCCcccccCccccCCCCCCCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            4589999999999999999888766655    556677777888999999999999999999999999999999999999


Q ss_pred             CCcccChhHHHHHHHHHhCceEcCCCCceeccccccCccchhhhhhhhhhccccccccccccCccc---ccccccccccc
Q 012883          103 LPARADMNDVLAALAREAGWTVEPDGTTYRLSNQSQSHHHLHQQMAAAAATTTAAFPVRSVESPLS---VKNCSVKASVE  179 (454)
Q Consensus       103 lp~~~d~n~vl~al~~eagw~v~~dgt~yr~~~~~~~~~~~~q~~~~~~~~~~~~f~~~~~~~p~~---~~~~~~~~~~~  179 (454)
                      ||+|||+||||||||+||||+||+||||||           .    .++|+++|+|+|+|||||++   |++|+.+...+
T Consensus       114 lp~~~d~n~vl~al~~eagw~v~~dg~~yr-----------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (681)
T PLN02705        114 LPARADMNDVLAALAREAGWTVEADGTTYR-----------Q----SPQPSHVGSFPVRSVESPLSSSTLKNCAKAAIES  178 (681)
T ss_pred             CCcccchHHHHHHHHHhcCcEEcCCCCccc-----------C----CCCCcccccccccCccCcchhhhHHHhhhhhhcc
Confidence            999999999999999999999999999999           4    77889999999999999997   99999999999


Q ss_pred             cCCcccccccCCCCCCcccccccccC-CCCCCCccCCCCcccchhhhhhhhhhhhcccCCCCCCCCCCCCccEEEEeecc
Q 012883          180 CQPSVLRIDESLSPASFDSVVIPERD-SRGGEFNASTSPINNSVECLEADQLIQDVRAGEHEDDFTGTPYIPVYVMLANH  258 (454)
Q Consensus       180 ~~~s~~~~d~~~s~~s~~s~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~d~~~~~~~~~~~~~~~VpVyVMLPLd  258 (454)
                      ||+|+|||||||||.|||||||+|++ +++++|+ +++|| +|++|++++|++++++++.++.+++.+++||||||||||
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VpVyVMLPLd  256 (681)
T PLN02705        179 QQHSVLRIDESLSPVSLDSVVIAESDHPGNGRYT-STSPI-TSVGCLEADQLIQDVHSGEHENDFTETFYVPVYVMLAVG  256 (681)
T ss_pred             cccchhccccccCcccccceeeeccccccccccc-ccCcc-ccccccchhhhhhccCCCCCccCcCCCCceeEEEEeecc
Confidence            99999999999999999999999999 8999999 99999 999999999999999999999999999999999999999


Q ss_pred             eecCCccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEEEEEeeccCCCCCC
Q 012883          259 VINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSG  338 (454)
Q Consensus       259 vV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqvVMSFHqCGGNVGD  338 (454)
                      +|+.+|+|+++++|+++|++||++|||||||||||||||+++|++|||+||++||+|||++|||||||||||||||||||
T Consensus       257 ~V~~~~~l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD  336 (681)
T PLN02705        257 IINNFCQLVDPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSGYRELFNIIREFKLKLQVVMAFHEYGGNASG  336 (681)
T ss_pred             eeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEeeccCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccchHHHhhhcCCCCeEEecCCCCccCceeeeecCcccccCCCchhHhhHHHHHHHHHHHhhhhcccceeEEEecc
Q 012883          339 DAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGL  418 (454)
Q Consensus       339 ~~~IPLP~WV~e~g~~npDIfyTDrsG~Rn~EcLSlgvD~~pVL~GRTpiq~Y~DFMrSFr~~F~d~l~~g~I~eI~VGL  418 (454)
                      +|+||||+||+++|++|||||||||+|+||+||||||+|++|||+||||||||+|||+|||++|++||++++|+||+|||
T Consensus       337 ~~~IPLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~g~I~eI~VGL  416 (681)
T PLN02705        337 NVMISLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLFVEGLITAVEIGL  416 (681)
T ss_pred             cccccCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhccCCceeEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999989999999999


Q ss_pred             cCcccccCCCCCCCCCCcCCccceecccCchhhcC
Q 012883          419 GPSGELKYPSLSERMGWRYPGIGEFQIFTAKSTES  453 (454)
Q Consensus       419 GPaGELRYPSYp~~~GW~yPGiGEFQCYDkyml~s  453 (454)
                      ||||||||||||++.||+||||||||||||||+++
T Consensus       417 GP~GELRYPSYp~~~gW~fPGiGEFQCYDkymla~  451 (681)
T PLN02705        417 GASGELKYPSFPERMGWIYPGIGEFQCYDKYSQQN  451 (681)
T ss_pred             CCCccccCCCCcccCCCCCCCcceeeeccHHHHHH
Confidence            99999999999999999999999999999999975

>PLN02905 beta-amylase Back     alignment and domain information
>PLN00197 beta-amylase; Provisional Back     alignment and domain information
>PLN02803 beta-amylase Back     alignment and domain information
>PLN02801 beta-amylase Back     alignment and domain information
>PLN02161 beta-amylase Back     alignment and domain information
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs) Back     alignment and domain information
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN03059 beta-galactosidase; Provisional Back     alignment and domain information
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03356 BGL beta-galactosidase Back     alignment and domain information
>PLN02705 beta-amylase Back     alignment and domain information
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases Back     alignment and domain information
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>smart00633 Glyco_10 Glycosyl hydrolase family 10 Back     alignment and domain information
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional Back     alignment and domain information
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6 Back     alignment and domain information
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional Back     alignment and domain information
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function Back     alignment and domain information
>TIGR01233 lacG 6-phospho-beta-galactosidase Back     alignment and domain information
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family Back     alignment and domain information
>PRK13511 6-phospho-beta-galactosidase; Provisional Back     alignment and domain information
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases Back     alignment and domain information
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional Back     alignment and domain information
>PRK01060 endonuclease IV; Provisional Back     alignment and domain information
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02814 beta-glucosidase Back     alignment and domain information
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like Back     alignment and domain information
>cd03307 Mta_CmuA_like MtaA_CmuA_like family Back     alignment and domain information
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional Back     alignment and domain information
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC Back     alignment and domain information
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed Back     alignment and domain information
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed Back     alignment and domain information
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I Back     alignment and domain information
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated Back     alignment and domain information
>PLN02849 beta-glucosidase Back     alignment and domain information
>PLN02998 beta-glucosidase Back     alignment and domain information
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen [] Back     alignment and domain information
>PRK08508 biotin synthase; Provisional Back     alignment and domain information
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3 Back     alignment and domain information
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4 Back     alignment and domain information
>PLN02591 tryptophan synthase Back     alignment and domain information
>PLN02361 alpha-amylase Back     alignment and domain information
>PHA00442 host recBCD nuclease inhibitor Back     alignment and domain information
>PRK11572 copper homeostasis protein CutC; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query454
1v3i_A 495 The Roles Of Glu186 And Glu380 In The Catalytic Rea 2e-55
1q6g_A 495 Crystal Structure Of Soybean Beta-Amylase Mutant (N 2e-55
1wdr_A 495 The Role Of An Inner Loop In The Catalytic Mechanis 2e-55
1q6c_A 495 Crystal Structure Of Soybean Beta-Amylase Complexed 2e-55
1wdq_A 495 The Role Of An Inner Loop In The Catalytic Mechanis 2e-55
1wds_A 495 The Role Of An Inner Loop In The Catalytic Mechanis 2e-55
1ukp_A 495 Crystal Structure Of Soybean Beta-Amylase Mutant Su 2e-55
1uko_A 495 Crystal Structure Of Soybean Beta-Amylase Mutant Su 3e-55
1q6d_A 495 Crystal Structure Of Soybean Beta-Amylase Mutant (M 4e-55
1v3h_A 495 The Roles Of Glu186 And Glu380 In The Catalytic Rea 4e-55
1bya_A 495 Crystal Structures Of Soybean Beta-Amylase Reacted 5e-55
1btc_A 491 Three-Dimensional Structure Of Soybean Beta-Amylase 6e-55
1q6e_A 495 Crystal Structure Of Soybean Beta-Amylase Mutant (E 1e-54
2dqx_A 495 Mutant Beta-Amylase (W55r) From Soy Bean Length = 4 1e-54
1fa2_A 498 Crystal Structure Of Beta-Amylase From Sweet Potato 3e-54
1b1y_A 500 Sevenfold Mutant Of Barley Beta-Amylase Length = 50 5e-48
2xff_A 535 Crystal Structure Of Barley Beta-Amylase Complexed 2e-47
3voc_A 419 Crystal Structure Of The Catalytic Domain Of Beta-a 1e-19
1vep_A 516 Crystal Structure Analysis Of Triple (T47mY164ET328 2e-11
1ven_A 516 Crystal Structure Analysis Of Y164eMALTOSE OF BACIL 3e-11
1b90_A 516 Bacillus Cereus Beta-Amylase Apo Form Length = 516 2e-10
1veo_A 516 Crystal Structure Analysis Of Y164fMALTOSE OF BACIL 2e-10
1itc_A 516 Beta-amylase From Bacillus Cereus Var. Mycoides Com 7e-10
>pdb|1V3I|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase Length = 495 Back     alignment and structure 
Iteration: 1

 Score =  213 bits (542), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 93/199 (46%), Positives = 135/199 (67%)
Query: 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS 307
           Y+PVYVML   V+N      DP+ +++++  ++A  VDGV+V+ WWGI+E   P++Y W 
Sbjct: 11  YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 308 GYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRR 367
            YR L  +++E  L +Q +M+FH+ G N      I +PQWV++IG+ N DIF+T+R G R
Sbjct: 71  AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 368 NTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYP 427
           N E L+ GVD E + +GRT IE+Y D+M+SFR    D   +GLI  +E+GLGP+GEL+YP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 428 SLSERMGWRYPGIGEFQIF 446
           S  +  GW +PGIGEFQ +
Sbjct: 191 SYPQSQGWEFPGIGEFQCY 209
>pdb|1Q6G|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t) With Increased Ph Optimum Length = 495 Back     alignment and structure
>pdb|1WDR|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase Length = 495 Back     alignment and structure
>pdb|1Q6C|A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose Length = 495 Back     alignment and structure
>pdb|1WDQ|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase Length = 495 Back     alignment and structure
>pdb|1WDS|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta- Amylase Length = 495 Back     alignment and structure
>pdb|1UKP|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region Length = 495 Back     alignment and structure
>pdb|1UKO|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region Length = 495 Back     alignment and structure
>pdb|1Q6D|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t) With Increased Ph Optimum Length = 495 Back     alignment and structure
>pdb|1V3H|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase Length = 495 Back     alignment and structure
>pdb|1BYA|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With Beta-Maltose And Maltal: Active Site Components And Their Apparent Role In Catalysis Length = 495 Back     alignment and structure
>pdb|1BTC|A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase Determined At 3.0 Angstroms Resolution: Preliminary Chain Tracing Of The Complex With Alpha-Cyclodextrin Length = 491 Back     alignment and structure
>pdb|1Q6E|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y) With Increased Ph Optimum At Ph 5.4 Length = 495 Back     alignment and structure
>pdb|2DQX|A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean Length = 495 Back     alignment and structure
>pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato Length = 498 Back     alignment and structure
>pdb|1B1Y|A Chain A, Sevenfold Mutant Of Barley Beta-Amylase Length = 500 Back     alignment and structure
>pdb|2XFF|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With Acarbose Length = 535 Back     alignment and structure
>pdb|3VOC|A Chain A, Crystal Structure Of The Catalytic Domain Of Beta-amylase From Paenibacillus Polymyxa Length = 419 Back     alignment and structure
>pdb|1VEP|A Chain A, Crystal Structure Analysis Of Triple (T47mY164ET328N) MALTOSE OF BACILLUS CEREUS BETA-Amylase At Ph 6.5 Length = 516 Back     alignment and structure
>pdb|1VEN|A Chain A, Crystal Structure Analysis Of Y164eMALTOSE OF BACILUS Cereus Beta-Amylase At Ph 4.6 Length = 516 Back     alignment and structure
>pdb|1B90|A Chain A, Bacillus Cereus Beta-Amylase Apo Form Length = 516 Back     alignment and structure
>pdb|1VEO|A Chain A, Crystal Structure Analysis Of Y164fMALTOSE OF BACILLUS Cereus Beta-Amylase At Ph 4.6 Length = 516 Back     alignment and structure
>pdb|1ITC|A Chain A, Beta-amylase From Bacillus Cereus Var. Mycoides Complexed With Maltopentaose Length = 516 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query454
2xfr_A 535 Beta-amylase; hydrolase, carbohydrate metabolism, 1e-88
1wdp_A 495 Beta-amylase; (beta/alpha)8 barrel, hydrolase; 1.2 5e-88
1fa2_A 498 Beta-amylase; TIM barrel, hydrolase; HET: DOM; 2.3 9e-88
1vem_A 516 Beta-amylase; beta-alpha-barrels, optimum PH, hydr 4e-63
>2xfr_A Beta-amylase; hydrolase, carbohydrate metabolism, glycosyl hydrolase famil starch degradation, germination; 0.97A {Hordeum vulgare} PDB: 2xff_A 2xfy_A* 2xg9_A* 2xgb_A* 2xgi_A* 1b1y_A* Length = 535 Back     alignment and structure
 Score =  279 bits (714), Expect = 1e-88
 Identities = 81/208 (38%), Positives = 128/208 (61%)

Query: 246 TPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA 305
             Y+ VYVML    ++   +    + +R ++  +    VDGV+V+ WWG+VEG  P+ Y 
Sbjct: 7   GNYVQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYD 66

Query: 306 WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREG 365
           WS Y++LF ++++  LK+Q +M+FH+ G N      I +PQWV ++G  + DIF+TD  G
Sbjct: 67  WSAYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHG 126

Query: 366 RRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELK 425
            RN E L+ GVD + + +GR+ +++Y D+M SFR    +   AG+I  +E+GLGP+GE++
Sbjct: 127 TRNIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKEFLDAGVIVDIEVGLGPAGEMR 186

Query: 426 YPSLSERMGWRYPGIGEFQIFTAKSTES 453
           YPS  +  GW +PGIGEF  +       
Sbjct: 187 YPSYPQSHGWSFPGIGEFICYDKYLQAD 214
>1wdp_A Beta-amylase; (beta/alpha)8 barrel, hydrolase; 1.27A {Glycine max} SCOP: c.1.8.1 PDB: 1bfn_A* 1q6c_A 1wdr_A* 1v3i_A* 1v3h_A* 1q6d_A* 1q6g_A* 1wdq_A* 1wds_A* 1q6e_A* 1q6f_A* 2dqx_A 1byb_A* 1bya_A* 1byc_A* 1byd_A* 1uko_A 1ukp_A 1btc_A* Length = 495 Back     alignment and structure
>1fa2_A Beta-amylase; TIM barrel, hydrolase; HET: DOM; 2.30A {Ipomoea batatas} SCOP: c.1.8.1 Length = 498 Back     alignment and structure
>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A Length = 516 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query454
1wdp_A 495 Beta-amylase; (beta/alpha)8 barrel, hydrolase; 1.2 100.0
1fa2_A 498 Beta-amylase; TIM barrel, hydrolase; HET: DOM; 2.3 100.0
2xfr_A 535 Beta-amylase; hydrolase, carbohydrate metabolism, 100.0
1vem_A 516 Beta-amylase; beta-alpha-barrels, optimum PH, hydr 100.0
3d3a_A 612 Beta-galactosidase; protein structure initiative I 98.58
3u7v_A 552 Beta-galactosidase; structural genomics, PSI-biolo 98.39
3tty_A 675 Beta-GAL, beta-galactosidase; TIM barrel, glycosid 98.26
1kwg_A 645 Beta-galactosidase; TIM barrel, glycoside hydrolas 98.09
4e8d_A 595 Glycosyl hydrolase, family 35; TIM barrel, beta-pr 97.88
3thd_A 654 Beta-galactosidase; TIM-barrel domain, glycosyl hy 97.83
2osx_A 481 Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel 97.74
1tg7_A 971 Beta-galactosidase; TIM barrel domain, glycoside h 97.5
3og2_A 1003 Beta-galactosidase; TIM barrel domain, glycoside h 97.48
3ahx_A 453 Beta-glucosidase A; cellulases, glycosyl hydrolase 97.37
1qox_A 449 Beta-glucosidase; hydrolase, cellulose degradation 97.3
3fj0_A 465 Beta-glucosidase; BGLB,BGL, hydrolase, glycosidase 97.27
1e4i_A 447 Beta-glucosidase; hydrolase, family 1 glycosyl hyd 97.26
2j78_A 468 Beta-glucosidase A; family 1, hydrolase, inhibitor 97.19
2dga_A 565 Beta-glucosidase; alpha/beta barrel, hydrolase; 1. 97.0
1ece_A 358 Endocellulase E1; glycosyl hydrolase; HET: BGC; 2. 96.99
2o9p_A 454 Beta-glucosidase B; family 1 glycoside hydrolase; 96.98
1ug6_A 431 Beta-glycosidase; glucosidase, atomic resolution, 96.93
2e9l_A 469 Cytosolic beta-glucosidase; novel cytosolic neutra 96.88
2jf7_A 532 Strictosidine-O-beta-D-glucosidase; alkaloid, hydr 96.86
1vff_A 423 Beta-glucosidase; glycosyl hydrolase, membrane-bou 96.86
1v08_A 512 Beta-glucosidase; glycoside hydrolase, dimboa-gluc 96.85
1v02_A 565 Dhurrinase, dhurrinase-1; beta-glucosidase, dhurri 96.84
1cbg_A 490 Cyanogenic beta-glucosidase; hydrolase (O-glycosyl 96.83
3ahy_A 473 Beta-glucosidase; cellulases, glycosyl hydrolase, 96.78
2e3z_A 465 Beta-glucosidase; TIM barrel, glycoside hydrolase 96.76
1pbg_A 468 PGAL, 6-phospho-beta-D-galactosidase; hydrolase (g 96.74
1wcg_A 464 Thioglucosidase, myrosinase; aphid, beta-glucosida 96.71
1vjz_A 341 Endoglucanase; TM1752, structural genomics, JCSG, 96.65
1e4m_M 501 Myrosinase MA1; hydrolase, family 1 glycosyl hydro 96.6
1rh9_A 373 Endo-beta-mannanase; endo-beta-mannase, retaining, 96.59
1ceo_A 343 Cellulase CELC; glycosyl hydrolase, family A/5 of 96.52
2d1z_A 436 Endo-1,4-beta-D-xylanase; TIM-barrel, retaining en 96.32
1gnx_A 479 Beta-glucosidase; hydrolase, glycosyltransferase, 96.3
3apg_A 473 Beta-glucosidase; TIM barrel, hydrolase, sugar bin 96.26
4hz8_A 444 Beta-glucosidase; BGLB,BGL, hydrolase, glycosid ba 96.26
2xhy_A 479 BGLA, 6-phospho-beta-glucosidase BGLA; hydrolase, 96.22
2jep_A 395 Xyloglucanase; family 5, plant cell WALL, hydrolas 96.16
1n82_A 331 Xylanase, intra-cellular xylanase; hydrolase; 1.45 96.15
4b3l_A 479 Beta-glucosidase; hydrolase, glycosidase, carbohyd 96.15
3cui_A 315 EXO-beta-1,4-glucanase; CEX, xylanase, isofagomine 96.12
1w91_A 503 Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 96.09
3pzg_A 383 Mannan endo-1,4-beta-mannosidase. glycosyl hydrol 96.08
1qvb_A 481 Beta-glycosidase; TIM-barrel, thermostable, hydrol 96.04
2dep_A 356 Xylanase B, thermostable celloxylanase; glycosidas 96.01
1xyz_A 347 1,4-beta-D-xylan-xylanohydrolase; glycosyl hydrola 96.0
1ur1_A 378 Endoxylanase; hydrolase, family 10, glycoside hydr 95.96
1fob_A 334 Beta-1,4-galactanase; B/A barrel, glycosyl hydrola 95.91
1ta3_B 303 Endo-1,4-beta-xylanase; beta alpha barrel (XIP-I), 95.88
1edg_A 380 Endoglucanase A; family A, cellulases, xylanases, 95.85
3f5l_A 481 Beta-glucosidase; beta-alpha-barrels, glycosidase, 95.83
3nco_A 320 Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1 95.82
3gnp_A 488 OS03G0212800 protein; beta-alpha barrel, glycosida 95.75
1nq6_A 302 XYS1; glycoside hydrolase family 10, xylanase, xyl 95.69
1v0l_A 313 Endo-1,4-beta-xylanase A; glycoside hydrolase fami 95.6
1i1w_A 303 Endo-1,4-beta-xylanase; xylan degradation, hydrola 95.55
1h1n_A305 Endo type cellulase ENGI; hydrolase, glycosyl hydr 95.54
3aof_A 317 Endoglucanase; glycosyl hydrolase family 5, cellul 95.45
1hjs_A 332 Beta-1,4-galactanase; 4-galactanases, family 53 gl 95.45
3n9k_A 399 Glucan 1,3-beta-glucosidase; aromatic entranceway/ 95.43
1r85_A 379 Endo-1,4-beta-xylanase; hydrolase; HET: GOL; 1.45A 95.39
1qnr_A 344 Endo-1,4-B-D-mannanase; hydrolase, anomalous scatt 95.37
3icg_A 515 Endoglucanase D; cellulase, xylanase, carbohydrate 95.35
1uhv_A 500 Beta-xylosidase; family 39 glycoside hydrolase, xy 95.31
3ta9_A 458 Glycoside hydrolase family 1; TIM barrel, glucosid 95.1
3ndz_A 345 Endoglucanase D; cellotriose, xylanase, carbohydra 95.09
3ayr_A 376 Endoglucanase; TIM barrel, hydrolase, carbohydrate 95.07
1egz_A291 Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CL 94.69
1ur4_A 399 Galactanase; hydrolase, beta-1, glycoside hydrolas 94.67
2uwf_A 356 Endoxylanase, alkaline active endoxylanase; hydrol 94.67
1h4p_A 408 Glucan 1,3-beta-glucosidase I/II; hydrolase, gluca 94.43
1uuq_A 440 Mannosyl-oligosaccharide glucosidase; hydrolase, m 94.33
3qr3_A 340 Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A 94.1
4atd_A 513 Raucaffricine-O-beta-D-glucosidase; alkaloid, hydr 93.97
1g01_A 364 Endoglucanase; alpha/beta barrel, TIM barrel, hydr 93.85
3vup_A 351 Beta-1,4-mannanase; TIM barrel, digestive fluid, H 93.34
2c0h_A 353 Mannan endo-1,4-beta-mannosidase; hydrolase, signa 93.33
1tvn_A293 Cellulase, endoglucanase G; glycoside hydrolase, C 93.1
3qom_A 481 6-phospho-beta-glucosidase; structural genomics, P 93.06
3vii_A 487 Beta-glucosidase; cellulases, glycosyl hydrolase, 93.03
3niy_A 341 Endo-1,4-beta-xylanase; TIM-barrel, hydrolase; 1.5 92.95
3u7b_A 327 Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET 92.84
1bqc_A302 Protein (beta-mannanase); glycosyl hydrolase, fami 92.49
3emz_A 331 Xylanase, endo-1,4-beta-xylanase; (alpha/beta)8 ba 92.43
1j93_A353 UROD, uroporphyrinogen decarboxylase; beta barrel, 92.4
4dde_A 480 6-phospho-beta-glucosidase; structural genomics, P 92.37
3ptm_A 505 Beta-glucosidase OS4BGlu12; beta-alpha barrel, gly 92.27
4ekj_A 500 Beta-xylosidase; TIM-barrel fold, hemicellulase, h 92.12
3l55_A 353 B-1,4-endoglucanase/cellulase; putative beta-1,4-e 91.94
7a3h_A303 Endoglucanase; hydrolase, cellulose degradation, g 91.89
4hty_A359 Cellulase; (alpha/beta)8 barrel, family 5 endogluc 91.49
2whl_A294 Beta-mannanase, baman5; glycoside hydrolase, hydro 90.7
4f8x_A 335 Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET 90.57
3qho_A 458 Endoglucanase, 458AA long hypothetical endo-1,4-be 90.18
2inf_A359 URO-D, UPD, uroporphyrinogen decarboxylase; (alpha 89.49
1w32_A 348 Endo-1,4-beta-xylanase A precursor; mutant, calciu 89.08
4acy_A 382 Endo-alpha-mannosidase; hydrolase, endomannosidase 88.37
3dhu_A 449 Alpha-amylase; structural genomics, hydrolase, gly 88.26
2bdq_A224 Copper homeostasis protein CUTC; alpha beta protei 87.63
3tva_A290 Xylose isomerase domain protein TIM barrel; struct 87.34
2y8k_A 491 Arabinoxylanase, carbohydrate binding family 6; hy 87.25
3zss_A 695 Putative glucanohydrolase PEP1A; alpha-glucan bios 87.01
1uas_A 362 Alpha-galactosidase; TIM-barrel, beta-alpha-barrel 86.8
3civ_A 343 Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1. 86.34
3cyv_A354 URO-D, UPD, uroporphyrinogen decarboxylase; alpha/ 86.15
3ro8_A 341 Endo-1,4-beta-xylanase; glycosyl hydrolase family 85.81
4ad1_A380 Glycosyl hydrolase family 71; glycoside hydrolase 85.63
3pzt_A327 Endoglucanase; alpha/beta barrel, glycosyl hydrola 85.6
1us2_A 530 Xylanase10C, endo-beta-1,4-xylanase; hydrolase, ca 85.42
1twd_A256 Copper homeostasis protein CUTC; TIM-like protein, 84.86
2eja_A338 URO-D, UPD, uroporphyrinogen decarboxylase; dimer, 83.88
2cks_A306 Endoglucanase E-5; carbohydrate metabolism, polysa 83.85
1wky_A 464 Endo-beta-1,4-mannanase; TIM barrel, catalytic dom 83.49
4awe_A 387 Endo-beta-D-1,4-mannanase; hydrolase, endo-mannana 83.2
2zds_A 340 Putative DNA-binding protein; TIM-barrel fold, str 83.15
3a24_A641 Alpha-galactosidase; glycoside hydrolase family 97 83.1
3nvt_A385 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; 82.93
3mi6_A 745 Alpha-galactosidase; NESG, structural genomics, PS 82.66
4exq_A368 UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid 82.6
1r3s_A367 URO-D, uroporphyrinogen decarboxylase, UPD; uropor 81.83
2x7v_A287 Probable endonuclease 4; DNA repair protein, metal 81.65
4do4_A 400 Alpha-N-acetylgalactosaminidase; pharmacological c 81.26
>1wdp_A Beta-amylase; (beta/alpha)8 barrel, hydrolase; 1.27A {Glycine max} SCOP: c.1.8.1 PDB: 1bfn_A* 1q6c_A 1wdr_A* 1v3i_A* 1v3h_A* 1q6d_A* 1q6g_A* 1wdq_A* 1wds_A* 1q6e_A* 1q6f_A* 2dqx_A 1byb_A* 1bya_A* 1byc_A* 1byd_A* 1uko_A 1ukp_A 1btc_A* Back     alignment and structure
Probab=100.00  E-value=4.7e-105  Score=813.93  Aligned_cols=208  Identities=45%  Similarity=0.925  Sum_probs=204.7

Q ss_pred             CCCccEEEEeecceecCCccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHHcCCceEE
Q 012883          246 TPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV  325 (454)
Q Consensus       246 ~~~VpVyVMLPLdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~~GLKlqv  325 (454)
                      +++||||||||||+|+.+|+|+++++|+++|++||++|||||||||||||||+++|++|||+||++||+|||++||||||
T Consensus         9 ~~~vpv~VMlPLd~V~~~~~~~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mv~~~GLKlq~   88 (495)
T 1wdp_A            9 LNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWRAYRSLLQLVQECGLTLQA   88 (495)
T ss_dssp             TTCCCEEEECCTTSBCTTSCBCCHHHHHHHHHHHHHTTCCEEEEEEEHHHHTCSSTTCCCCHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCccEEEeeecceecCCCeeCCHHHHHHHHHHHHHcCCCEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEE
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeccCCCCCCCcccccchHHHhhhcCCCCeEEecCCCCccCceeeeecCcccccCCCchhHhhHHHHHHHHHHHhhh
Q 012883          326 VMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDL  405 (454)
Q Consensus       326 VMSFHqCGGNVGD~~~IPLP~WV~e~g~~npDIfyTDrsG~Rn~EcLSlgvD~~pVL~GRTpiq~Y~DFMrSFr~~F~d~  405 (454)
                      |||||||||||||+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||||||+|||+|||++|++|
T Consensus        89 vmSFHqCGgNVGD~~~IPLP~WV~~~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~Dfm~SFr~~F~~~  168 (495)
T 1wdp_A           89 IMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDF  168 (495)
T ss_dssp             EEECSCBCCSTTCSCCBCSCHHHHHHHHHCGGGEEECTTCCEEEEEECGGGTTCCCBTTBCHHHHHHHHHHHHHHHTHHH
T ss_pred             EEEeeecCCCCCCcccccCCHHHHHhhccCCCcEEECCCCCccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccceeEEEecccCcccccCCCCCCCCCCcCCccceecccCchhhcC
Q 012883          406 FVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGIGEFQIFTAKSTES  453 (454)
Q Consensus       406 l~~g~I~eI~VGLGPaGELRYPSYp~~~GW~yPGiGEFQCYDkyml~s  453 (454)
                      +.+++|+||+|||||||||||||||+++||+||||||||||||||+++
T Consensus       169 ~~~~~I~eI~VGlGP~GELRYPSYp~~~gW~fPGiGEFQCYDky~~~~  216 (495)
T 1wdp_A          169 LESGLIIDIEVGLGPAGELRYPSYPQSQGWEFPGIGEFQCYDKYLKAD  216 (495)
T ss_dssp             HHTTCEEEEEECCSGGGBSSCCCSCGGGTCCTTCCCCCCCCSHHHHHH
T ss_pred             ccCCeeEEEEeCccccccccCCCCccccCCCCCCcceeeechHHHHHH
Confidence            955799999999999999999999998899999999999999999975
>1fa2_A Beta-amylase; TIM barrel, hydrolase; HET: DOM; 2.30A {Ipomoea batatas} SCOP: c.1.8.1 Back     alignment and structure
>2xfr_A Beta-amylase; hydrolase, carbohydrate metabolism, glycosyl hydrolase famil starch degradation, germination; 0.97A {Hordeum vulgare} PDB: 2xff_A 2xfy_A* 2xg9_A* 2xgb_A* 2xgi_A* 1b1y_A* Back     alignment and structure
>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A Back     alignment and structure
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3u7v_A Beta-galactosidase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel, glyco_hydro_42; HET: MSE; 1.80A {Caulobacter crescentus} Back     alignment and structure
>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A* Back     alignment and structure
>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42, trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP: b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A* Back     alignment and structure
>4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller, glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB: 4e8c_A Back     alignment and structure
>3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase, glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo sapiens} PDB: 3thc_A* Back     alignment and structure
>2osx_A Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel, hydrolase; HET: SIA GAL BGC 16C; 1.10A {Rhodococcus SP} PDB: 2oyk_A* 2osw_A* 2oyl_A* 2oym_A* 2osy_A* Back     alignment and structure
>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN; 1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A* Back     alignment and structure
>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family 35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A {Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A* Back     alignment and structure
>3ahx_A Beta-glucosidase A; cellulases, glycosyl hydrolase, manganese enhancement, hydro; HET: 7PE; 1.90A {Clostridium cellulovorans} Back     alignment and structure
>1qox_A Beta-glucosidase; hydrolase, cellulose degradation; 2.7A {Bacillus circulans} SCOP: c.1.8.4 Back     alignment and structure
>1e4i_A Beta-glucosidase; hydrolase, family 1 glycosyl hydrolase, covalent enzyme-GLYC intermediate, alpha/beta barrel; HET: G2F NFG; 2.00A {Bacillus polymyxa} SCOP: c.1.8.4 PDB: 1tr1_A 1bgg_A* 1bga_A 1uyq_A* Back     alignment and structure
>2j78_A Beta-glucosidase A; family 1, hydrolase, inhibitor, glycosidase, polysaccharide degradation, transition state mimic, carbohydrate metabolism; HET: GOX; 1.65A {Thermotoga maritima} SCOP: c.1.8.4 PDB: 1oif_A* 1oim_A* 1oin_A* 1od0_A* 1w3j_A* 1uz1_A* 2cbv_A* 2ces_A* 2cet_A* 2j75_A* 2j77_A* 2cbu_A* 2j79_A* 2j7b_A* 2j7c_A* 2j7d_A* 2j7e_A* 2j7f_A* 2j7g_A* 2j7h_A* ... Back     alignment and structure
>2dga_A Beta-glucosidase; alpha/beta barrel, hydrolase; 1.80A {Triticum aestivum} PDB: 3aiq_A* 3air_A* 3ais_A* 3aiu_A 3aiv_A* 3aiw_A* Back     alignment and structure
>1ece_A Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.40A {Acidothermus cellulolyticus} SCOP: c.1.8.3 PDB: 1vrx_A Back     alignment and structure
>2o9p_A Beta-glucosidase B; family 1 glycoside hydrolase; 2.10A {Paenibacillus polymyxa} PDB: 2o9t_A* 2z1s_A* 2jie_A* 2o9r_A* Back     alignment and structure
>1ug6_A Beta-glycosidase; glucosidase, atomic resolution, riken structural genomics/PR initiative, RSGI, structural genomics, hydrolase; 0.99A {Thermus thermophilus} SCOP: c.1.8.4 PDB: 1np2_A Back     alignment and structure
>2e9l_A Cytosolic beta-glucosidase; novel cytosolic neutral beta-glycosylceramidase, hydrolase; HET: BGC PLM OLA; 1.60A {Homo sapiens} PDB: 2e9m_A* 2zox_A* 2jfe_X* Back     alignment and structure
>2jf7_A Strictosidine-O-beta-D-glucosidase; alkaloid, hydrolase; 2.48A {Rauvolfia serpentina} PDB: 2jf6_A Back     alignment and structure
>1vff_A Beta-glucosidase; glycosyl hydrolase, membrane-bound enzyme, thermostability, TIM barrel, alkylglucosides; 2.50A {Pyrococcus horikoshii} SCOP: c.1.8.4 Back     alignment and structure
>1v08_A Beta-glucosidase; glycoside hydrolase, dimboa-glucoside, inhibitor, PEST defense, family GH1, hydrolase, chloroplast, transit peptide, 3D-structure; HET: NTZ; 1.9A {Zea mays} SCOP: c.1.8.4 PDB: 1e4l_A* 1e4n_A* 1e56_A* 1e55_A* 1e1e_A 1e1f_A* 1h49_A* 1hxj_A Back     alignment and structure
>1v02_A Dhurrinase, dhurrinase-1; beta-glucosidase, dhurrin hydrolysis, PEST defense, family GH1, hydrolase; 1.9A {Sorghum bicolor} SCOP: c.1.8.4 PDB: 1v02_E 1v03_A* Back     alignment and structure
>1cbg_A Cyanogenic beta-glucosidase; hydrolase (O-glycosyl); 2.15A {Trifolium repens} SCOP: c.1.8.4 Back     alignment and structure
>3ahy_A Beta-glucosidase; cellulases, glycosyl hydrolase, manganese enhancement, hydro; 1.63A {Trichoderma reesei} Back     alignment and structure
>2e3z_A Beta-glucosidase; TIM barrel, glycoside hydrolase family 1, CLAN GH-A, structural genomics, NPPSFA; 1.50A {Phanerochaete chrysosporium} PDB: 2e40_A* Back     alignment and structure
>1pbg_A PGAL, 6-phospho-beta-D-galactosidase; hydrolase (glycosyl hydrolase); 2.30A {Lactococcus lactis} SCOP: c.1.8.4 PDB: 3pbg_A 2pbg_A 4pbg_A* Back     alignment and structure
>1wcg_A Thioglucosidase, myrosinase; aphid, beta-glucosidase, insect, beta-barrel, hydrolase, glycosidase; 1.10A {Brevicoryne brassicae} SCOP: c.1.8.4 Back     alignment and structure
>1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3 Back     alignment and structure
>1e4m_M Myrosinase MA1; hydrolase, family 1 glycosyl hydrolase, glucosinolate, TIM B; HET: NAG FUC BMA MAN; 1.2A {Sinapis alba} SCOP: c.1.8.4 PDB: 1e6q_M* 1e6s_M* 1e6x_M* 1e70_M* 1e71_M* 1e72_M* 1e73_M* 1w9b_M* 1w9d_M* 2wxd_M* 1dwa_M* 1dwf_M* 1dwg_M* 1dwh_M* 1dwi_M* 1dwj_M* 1myr_A* Back     alignment and structure
>1rh9_A Endo-beta-mannanase; endo-beta-mannase, retaining, glycoside hydrolase family 5; 1.50A {Solanum lycopersicum} SCOP: c.1.8.3 Back     alignment and structure
>1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl hydrolases, cellulose degradation; 1.90A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A Back     alignment and structure
>2d1z_A Endo-1,4-beta-D-xylanase; TIM-barrel, retaining enzyme, catalytic-site mutant, chemica hydrolase; 1.60A {Streptomyces olivaceoviridis} PDB: 2d20_A* 2d22_A 2d23_A 2d24_A* 1xyf_A 1isw_A* 1isx_A* 1isy_A* 1isv_A* 1it0_A* 1v6u_A* 1v6v_A* 1v6w_A* 1v6x_A* 1isz_A Back     alignment and structure
>1gnx_A Beta-glucosidase; hydrolase, glycosyltransferase, family 1 of glycosyl hydrolase; HET: SUC; 1.68A {Streptomyces SP} SCOP: c.1.8.4 PDB: 1gon_A Back     alignment and structure
>3apg_A Beta-glucosidase; TIM barrel, hydrolase, sugar binding, hydrolysis; 2.35A {Pyrococcus furiosus} Back     alignment and structure
>4hz8_A Beta-glucosidase; BGLB,BGL, hydrolase, glycosid barrel, carbohydrate/sugar binding; HET: BGC; 1.14A {Uncultured bacterium} PDB: 4hz7_A* 4hz6_A* 3fj0_A* 3cmj_A 3fiz_A* 3fiy_A* Back     alignment and structure
>2xhy_A BGLA, 6-phospho-beta-glucosidase BGLA; hydrolase, glycosidase; 2.30A {Escherichia coli} Back     alignment and structure
>2jep_A Xyloglucanase; family 5, plant cell WALL, hydrolase; 1.4A {Paenibacillus pabuli} PDB: 2jeq_A* Back     alignment and structure
>1n82_A Xylanase, intra-cellular xylanase; hydrolase; 1.45A {Geobacillus stearothermophilus} SCOP: c.1.8.3 PDB: 3mua_A* 2q8x_A* 3msd_A* 3msg_A* 3mui_A* 3ms8_A Back     alignment and structure
>4b3l_A Beta-glucosidase; hydrolase, glycosidase, carbohydrate-active enzyme; 2.51A {Streptococcus pyogenes} PDB: 4b3k_A Back     alignment and structure
>3cui_A EXO-beta-1,4-glucanase; CEX, xylanase, isofagomine inhibitor, TIM barrel, cellulose degradation, glycosidase, hydrolase; HET: X4S; 1.50A {Cellulomonas fimi} PDB: 3cug_A* 3cuh_A* 3cuf_A* 3cuj_A* 1fh9_A* 1fh7_A 1fh8_A 1exp_A* 1fhd_A* 1j01_A* 2exo_A 2xyl_A 2his_A* Back     alignment and structure
>1w91_A Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 2.2A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 2bs9_A 2bfg_A* Back     alignment and structure
>3pzg_A Mannan endo-1,4-beta-mannosidase. glycosyl hydrol 5; alpha/beta barrel, glycosyl hydrolase, sugar binding, secret hydrolase; 1.40A {Thermotoga petrophila} PDB: 3pz9_A 3pzi_A* 3pzm_A 3pzn_A* 3pzo_A* 3pzq_A* Back     alignment and structure
>1qvb_A Beta-glycosidase; TIM-barrel, thermostable, hydrolase; 2.40A {Thermosphaera aggregans} SCOP: c.1.8.4 Back     alignment and structure
>2dep_A Xylanase B, thermostable celloxylanase; glycosidase, xylan degradation, family 10, structural genomics, NPPSFA; 1.80A {Clostridium stercorarium} Back     alignment and structure
>1xyz_A 1,4-beta-D-xylan-xylanohydrolase; glycosyl hydrolase, xylanase, family F/10 of glycosyl hydrolases, glycosyltransferase; 1.40A {Clostridium thermocellum} SCOP: c.1.8.3 Back     alignment and structure
>1ur1_A Endoxylanase; hydrolase, family 10, glycoside hydrolase, hemicellulose, xylan degradation; HET: XYS AHR; 1.43A {Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uqy_A* 1uqz_A* 1ur2_A* 2cnc_A* Back     alignment and structure
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A Back     alignment and structure
>1ta3_B Endo-1,4-beta-xylanase; beta alpha barrel (XIP-I), beta alpha barrel (xylanase), HYD inhibitor-hydrolase complex; HET: NAG; 1.70A {Emericella nidulans} SCOP: c.1.8.3 Back     alignment and structure
>1edg_A Endoglucanase A; family A, cellulases, xylanases, family 5 of glycosyl hydrol cellulose degradation; 1.60A {Clostridium cellulolyticum} SCOP: c.1.8.3 Back     alignment and structure
>3f5l_A Beta-glucosidase; beta-alpha-barrels, glycosidase, hydrolase; HET: LB2 MES; 1.37A {Oryza sativa japonica group} PDB: 3aht_A* 3ahv_A* 3f5i_A* 3f5j_A* 3f5k_A* 3f4v_A* 2rgm_A* 2rgl_A* 3scr_A* 3scs_A* 3scp_A* 3scq_A* 3scu_A* 3scn_A* 3sco_A* 3sct_A* 3scv_A* 3scw_A* Back     alignment and structure
>3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase; 1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A* Back     alignment and structure
>3gnp_A OS03G0212800 protein; beta-alpha barrel, glycosidase, hydrolase; HET: SOG; 1.80A {Oryza sativa subsp} PDB: 3gno_A* 3gnr_A* Back     alignment and structure
>1nq6_A XYS1; glycoside hydrolase family 10, xylanase, xylan degradation,, hydrolase; 1.78A {Streptomyces halstedii} SCOP: c.1.8.3 Back     alignment and structure
>1v0l_A Endo-1,4-beta-xylanase A; glycoside hydrolase family 10, xylan degradation, isofagomine, hydrolase; 0.98A {Streptomyces lividans} SCOP: c.1.8.3 PDB: 1e0x_A 1e0w_A* 1od8_A 1v0k_A 1v0m_A 1v0n_A 1e0v_A* 1xas_A 2g3i_A 2g3j_A* 2g4f_A 1v6y_A Back     alignment and structure
>1i1w_A Endo-1,4-beta-xylanase; xylan degradation, hydrolase, glycosidase, enzyme, ultra HIG resolution, cryo temperature, 1; HET: PCA; 0.89A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1i1x_A* 2bnj_A* 1gok_A 1gom_A 1goo_A 1goq_A* 1gor_A* 1k6a_A 3o2l_A 3nyd_A* 1tux_A 1b31_A 1b30_A 1b3v_A* 1b3w_A* 1b3x_A* 1b3y_A* 1b3z_A* 1bg4_A Back     alignment and structure
>1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A Back     alignment and structure
>3aof_A Endoglucanase; glycosyl hydrolase family 5, cellulase, biofuel, hyperthermo hydrolase; HET: BMA; 1.29A {Thermotoga maritima} PDB: 3amg_A* 3amc_A 3amd_A 3mmu_A 3mmw_A 3azs_A* 3azr_A* 3azt_A* Back     alignment and structure
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A* Back     alignment and structure
>3n9k_A Glucan 1,3-beta-glucosidase; aromatic entranceway/clamp, exoglucanase, glycoside hydrolas protein-carbohydrate interaction; HET: BGC; 1.70A {Candida albicans} SCOP: c.1.8.3 PDB: 2pc8_A* 2pb1_A* 2pbo_A 3o6a_A 2pf0_A 1cz1_A 1eqc_A* 1eqp_A Back     alignment and structure
>1r85_A Endo-1,4-beta-xylanase; hydrolase; HET: GOL; 1.45A {Geobacillus stearothermophilus} SCOP: c.1.8.3 PDB: 1hiz_A* 1r87_A* 3mmd_A* 1r86_A Back     alignment and structure
>1qnr_A Endo-1,4-B-D-mannanase; hydrolase, anomalous scattering; HET: NAG MAB; 1.4A {Trichoderma reesei} SCOP: c.1.8.3 PDB: 1qno_A* 1qnq_A* 1qnp_A* 1qns_A* Back     alignment and structure
>1uhv_A Beta-xylosidase; family 39 glycoside hydrolase, xylan, xylose, covalent glycosyl-enzyme intermediate; 2.10A {Thermoanaerobacterium saccharolyticum} SCOP: b.71.1.2 c.1.8.3 PDB: 1px8_A Back     alignment and structure
>3ta9_A Glycoside hydrolase family 1; TIM barrel, glucosidase; 3.00A {Halothermothrix orenii} Back     alignment and structure
>3ndz_A Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_A* Back     alignment and structure
>3ayr_A Endoglucanase; TIM barrel, hydrolase, carbohydrate/sugar binding; 2.00A {Piromyces rhizinflatus} PDB: 3ays_A* Back     alignment and structure
>1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family 5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP: c.1.8.3 Back     alignment and structure
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A* Back     alignment and structure
>2uwf_A Endoxylanase, alkaline active endoxylanase; hydrolase, xylan degradation, xylanase structure, glycosidase, alkaliphilic; 2.10A {Bacillus halodurans} PDB: 2f8q_A 2fgl_A* Back     alignment and structure
>1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation, hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.8.3 Back     alignment and structure
>1uuq_A Mannosyl-oligosaccharide glucosidase; hydrolase, mannosidase, mannan, glycoside hydrolase, family 5; 1.5A {Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uz4_A* Back     alignment and structure
>3qr3_A Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A {Hypocrea jecorina} Back     alignment and structure
>4atd_A Raucaffricine-O-beta-D-glucosidase; alkaloid, hydrolase; 2.10A {Rauvolfia serpentina} PDB: 4a3y_A 3u5u_A 3u57_A 3u5y_A* Back     alignment and structure
>1g01_A Endoglucanase; alpha/beta barrel, TIM barrel, hydrolase; 1.90A {Bacillus SP} SCOP: c.1.8.3 PDB: 1g0c_A* Back     alignment and structure
>3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai} Back     alignment and structure
>2c0h_A Mannan endo-1,4-beta-mannosidase; hydrolase, signal, TIM alpha/beta barrel; 1.6A {Mytilus edulis} SCOP: c.1.8.3 Back     alignment and structure
>1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family 5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP: c.1.8.3 PDB: 1tvp_A* Back     alignment and structure
>3qom_A 6-phospho-beta-glucosidase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, glycoside hydrolase, hydrolase; HET: BGC; 1.50A {Lactobacillus plantarum} SCOP: c.1.8.0 PDB: 4gze_A Back     alignment and structure
>3vii_A Beta-glucosidase; cellulases, glycosyl hydrolase, hydrolase; HET: BTB; 0.97A {Neotermes koshunensis} PDB: 3ahz_A* 3vif_A* 3vih_A 3vig_A* 3vim_A* 3ai0_A* 3vin_A* 3vio_A* 3vip_A* 3vij_A* 3vik_A* 3vil_A* Back     alignment and structure
>3niy_A Endo-1,4-beta-xylanase; TIM-barrel, hydrolase; 1.58A {Thermotoga petrophila rku-1} SCOP: c.1.8.3 PDB: 3nj3_A* 1vbr_A* 1vbu_A Back     alignment and structure
>3u7b_A Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET: NAG BMA MAN; 1.94A {Fusarium oxysporum} Back     alignment and structure
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A* Back     alignment and structure
>3emz_A Xylanase, endo-1,4-beta-xylanase; (alpha/beta)8 barrel, GH10 enzyme complex, hydrolase; HET: HXH; 2.08A {Bacillus SP} SCOP: c.1.8.3 PDB: 3emq_A* 3emc_A* Back     alignment and structure
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1 Back     alignment and structure
>3ptm_A Beta-glucosidase OS4BGlu12; beta-alpha barrel, glycosidase, hydrolase; HET: G2F; 2.40A {Oryza sativa} PDB: 3ptk_A* 3ptq_A* Back     alignment and structure
>4ekj_A Beta-xylosidase; TIM-barrel fold, hemicellulase, hydrolase; 2.50A {Caulobacter vibrioides} Back     alignment and structure
>7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family 5, michaelis complex, SKEW-BOAT, distortion; 0.95A {Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A* 1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A* 1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A* 1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A Back     alignment and structure
>4hty_A Cellulase; (alpha/beta)8 barrel, family 5 endoglucanase, hydrolase; 2.00A {Uncultured bacterium} PDB: 4hu0_A* Back     alignment and structure
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A Back     alignment and structure
>4f8x_A Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET: NAG BMA; 1.47A {Penicillium canescens} Back     alignment and structure
>3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase; cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A {Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A* 3qhm_A* 3qhn_A* Back     alignment and structure
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis} Back     alignment and structure
>1w32_A Endo-1,4-beta-xylanase A precursor; mutant, calcium ION, thermostable, glycosyle hydrolase, family 10, error prone PCR, hydrolase; 1.2A {Cellvibrio japonicus} SCOP: c.1.8.3 PDB: 1w2p_A 1w2v_A 1w3h_A 1clx_A 1e5n_A* 1xys_A Back     alignment and structure
>4acy_A Endo-alpha-mannosidase; hydrolase, endomannosidase, glycoside hydrolase, CAZY, enzyme-carbohydrate interaction, mannose; HET: MSE; 1.69A {Bacteroides thetaiotaomicron} PDB: 4acz_A 4ad0_A* 4acz_B Back     alignment and structure
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} Back     alignment and structure
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} Back     alignment and structure
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus} Back     alignment and structure
>2y8k_A Arabinoxylanase, carbohydrate binding family 6; hydrolase; 1.47A {Clostridium thermocellum} Back     alignment and structure
>3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A* Back     alignment and structure
>1uas_A Alpha-galactosidase; TIM-barrel, beta-alpha-barrel, greek KEY motif, hydrolase; HET: GLA; 1.50A {Oryza sativa} SCOP: b.71.1.1 c.1.8.1 Back     alignment and structure
>3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A {Alicyclobacillus acidocaldarius} Back     alignment and structure
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri} Back     alignment and structure
>3ro8_A Endo-1,4-beta-xylanase; glycosyl hydrolase family 10, GH10, (beta/alpha)8 fold, XYLA hydrolase; 1.34A {Paenibacillus SP} PDB: 3rdk_A 4e4p_A Back     alignment and structure
>4ad1_A Glycosyl hydrolase family 71; glycoside hydrolase GH99, CAZY, enzyme-carbohydra interaction, mannose glycosidase inhibition; 1.90A {Bacteroides xylanisolvens} PDB: 4ad2_A* 4ad3_A* 4ad4_A* 4ad5_A* Back     alignment and structure
>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A Back     alignment and structure
>1us2_A Xylanase10C, endo-beta-1,4-xylanase; hydrolase, carbohydrate binding module, xylan degradation; HET: XYP; 1.85A {Cellvibrio japonicus} SCOP: b.18.1.11 c.1.8.3 PDB: 1us3_A Back     alignment and structure
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A Back     alignment and structure
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus} Back     alignment and structure
>2cks_A Endoglucanase E-5; carbohydrate metabolism, polysaccharide degradation, glycoside hydrolase family 5, hydrolase, glycosidase; HET: BEN; 1.6A {Thermobifida fusca} PDB: 2ckr_A* Back     alignment and structure
>1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3 Back     alignment and structure
>4awe_A Endo-beta-D-1,4-mannanase; hydrolase, endo-mannanase, glycosyl hydrolase, GH5; HET: NAG; 1.40A {Neurospora sitophila} Back     alignment and structure
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor} Back     alignment and structure
>3a24_A Alpha-galactosidase; glycoside hydrolase family 97, retaining glycosidase; HET: MES; 2.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* Back     alignment and structure
>3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis} Back     alignment and structure
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis} Back     alignment and structure
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A* Back     alignment and structure
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A* Back     alignment and structure
>4do4_A Alpha-N-acetylgalactosaminidase; pharmacological chaperone, (beta/alpha)8 barrel, glycosidase carbohydrate-binding protein, glycoprotein, lysosome; HET: NAG BMA MAN DJN CIT FUC; 1.40A {Homo sapiens} PDB: 3h54_A* 3h53_A* 3igu_A* 3h55_A* 4do5_A* 4do6_A* 1ktb_A* 1ktc_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 454
d1b1ya_ 500 c.1.8.1 (A:) beta-Amylase {Barley (Hordeum vulgare 1e-100
d1fa2a_ 498 c.1.8.1 (A:) beta-Amylase {Sweet potato (Ipomoea b 1e-100
d1wdpa1 490 c.1.8.1 (A:6-495) beta-Amylase {Soybean (Glycine m 1e-100
d1vema2 417 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus 4e-72
>d1b1ya_ c.1.8.1 (A:) beta-Amylase {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 500 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: beta-Amylase
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score =  307 bits (787), Expect = e-100
 Identities = 83/200 (41%), Positives = 128/200 (64%)

Query: 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS 307
           Y+ VYVML    ++   +    + +R ++  +    VDGV+V+ WWG+VEG  P+ Y WS
Sbjct: 5   YVQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWS 64

Query: 308 GYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRR 367
            Y++LF ++++  LK+Q +M+FH+ G N      I +PQWV ++G  + DIF+TD  G R
Sbjct: 65  AYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTR 124

Query: 368 NTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYP 427
           N E L+ GVD + + +GR+ +++Y D+M SFR    D   AG+I  +E+GLGP+GEL+YP
Sbjct: 125 NIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKDFLDAGVIVDIEVGLGPAGELRYP 184

Query: 428 SLSERMGWRYPGIGEFQIFT 447
           S  +  GW +PGIGEF  + 
Sbjct: 185 SYPQSHGWSFPGIGEFICYD 204
>d1fa2a_ c.1.8.1 (A:) beta-Amylase {Sweet potato (Ipomoea batatas) [TaxId: 4120]} Length = 498 Back     information, alignment and structure
>d1wdpa1 c.1.8.1 (A:6-495) beta-Amylase {Soybean (Glycine max) [TaxId: 3847]} Length = 490 Back     information, alignment and structure
>d1vema2 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus cereus [TaxId: 1396]} Length = 417 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query454
d1fa2a_ 498 beta-Amylase {Sweet potato (Ipomoea batatas) [TaxI 100.0
d1wdpa1 490 beta-Amylase {Soybean (Glycine max) [TaxId: 3847]} 100.0
d1b1ya_ 500 beta-Amylase {Barley (Hordeum vulgare) [TaxId: 451 100.0
d1vema2 417 Bacterial beta-amylase {Bacillus cereus [TaxId: 13 100.0
d1kwga2 393 A4 beta-galactosidase {Thermus thermophilus [TaxId 99.05
d1tg7a5 354 Beta-galactosidase LacA, N-terminal domain {Penici 97.57
d1hjsa_ 332 Beta-1,4-galactanase {Thielavia heterothallica, ak 97.22
d1ceoa_ 340 Endoglucanase CelC {Clostridium thermocellum [TaxI 97.21
d2pb1a1 394 Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) 97.01
d1rh9a1 370 Beta-mannanase {Tomato (Lycopersicon esculentum) [ 96.89
d1ecea_ 358 Endocellulase E1 {Acidothermus cellulolyticus [Tax 96.76
d1vjza_ 325 Endoglucanase homologue TM1752 {Thermotoga maritim 96.63
d2j78a1 443 Beta-glucosidase A {Thermotoga maritima [TaxId: 23 96.47
d1h4pa_ 408 Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharom 96.19
d1foba_ 334 Beta-1,4-galactanase {Fungus (Aspergillus aculeatu 96.17
d1uuqa_ 410 Exomannosidase {Cellvibrio mixtus [TaxId: 39650]} 95.88
d1n82a_ 330 Xylanase {Bacillus stearothermophilus, Ixt6 [TaxId 95.78
d2c0ha1 350 endo-1,4-beta-mannosidase {Blue mussel (Mytilus ed 95.78
d1e4ia_ 447 Beta-glucosidase A {Bacillus polymyxa [TaxId: 1406 95.71
d1gnxa_ 464 Beta-glucosidase A {Streptomyces sp. [TaxId: 1931] 95.63
d1vffa1 423 Beta-glucosidase A {Archaeon Pyrococcus horikoshii 95.46
d1ug6a_ 426 Beta-glucosidase A {Thermus thermophilus [TaxId: 2 95.39
d1ur4a_ 387 Beta-1,4-galactanase {Bacillus licheniformis [TaxI 95.28
d1pbga_ 468 6-phospho-beta-D-galactosidase, PGAL {Lactococcus 95.24
d1wcga1 462 Thioglucosidase {Cabbage aphid (Brevicoryne brassi 95.14
d1v02a_ 484 Plant beta-glucosidase (myrosinase) {Sorghum bicol 95.1
d1xyza_ 320 Xylanase {Clostridium thermocellum, XynZ [TaxId: 1 94.7
d1cbga_ 490 Plant beta-glucosidase (myrosinase) {Creeping whit 94.65
d1h1na_305 Endocellulase EngI {Thermoascus aurantiacus [TaxId 94.62
d1edga_ 380 Endoglucanase CelA {Clostridium cellulolyticum [Ta 94.05
d1us3a2 364 Xylanase 10c {Cellvibrio japonicus [TaxId: 155077] 93.95
d1wkya2297 Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 2449 93.9
d1qoxa_ 449 Beta-glucosidase A {Bacillus circulans, subsp. alk 93.64
d1qnra_ 344 Beta-mannanase {Trichoderma reesei [TaxId: 51453]} 92.79
d1vbua1 324 Xylanase {Thermotoga maritima [TaxId: 2336]} 92.77
d1nq6a_302 Xylanase A, catalytic core {Streptomyces halstedii 92.49
d1fh9a_ 312 Xylanase A, catalytic core {Cellulomonas fimi [Tax 91.94
d1uhva2 346 Beta-D-xylosidase, catalytic domain {Thermoanaerob 91.4
d1e4mm_ 499 Plant beta-glucosidase (myrosinase) {White mustard 91.39
d1i1wa_ 303 Xylanase A, catalytic core {Thermoascus aurantiacu 91.29
d1ta3b_ 301 Xylanase A, catalytic core {Emericella nidulans (A 91.23
d1v0la_ 302 Xylanase A, catalytic core {Streptomyces lividans 90.88
d1r85a_ 371 Xylanase {Bacillus stearothermophilus, Xt6 [TaxId: 90.7
d1ur1a_ 350 Xylanase {Cellvibrio mixtus [TaxId: 39650]} 89.16
d1bqca_302 Beta-mannanase {Thermomonospora fusca [TaxId: 2021 87.51
d7a3ha_300 Endoglucanase Cel5a {Bacillus agaradhaerens [TaxId 87.19
d1ea9c3 382 Maltogenic amylase, central domain {Bacillus sp., 85.92
d1geha1307 Ribulose 1,5-bisphosphate carboxylase-oxygenase {A 85.19
d1zy9a2 348 Alpha-galactosidase GalA catalytic domain {Thermot 85.07
d2guya2 381 Fungal alpha-amylases {Aspergillus oryzae, Taka-am 84.94
d1hvxa2 393 Bacterial alpha-amylase {Bacillus stearothermophil 82.2
d2q02a1271 Putative cytoplasmic protein STM4435 {Salmonella t 82.09
d1wzla3 382 Maltogenic amylase, central domain {Thermoactinomy 81.66
d1gjwa2 572 Maltosyltransferase {Thermotoga maritima [TaxId: 2 81.02
d2d3na2 394 Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 80.72
d2vzsa5 339 Exochitosanase CsxA {Amycolatopsis orientalis [Tax 80.47
d1w32a_ 346 Xylanase A, catalytic core {Pseudomonas fluorescen 80.41
d1ud2a2 390 Bacterial alpha-amylase {Bacillus sp., ksm-k38 [Ta 80.39
>d1fa2a_ c.1.8.1 (A:) beta-Amylase {Sweet potato (Ipomoea batatas) [TaxId: 4120]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: beta-Amylase
species: Sweet potato (Ipomoea batatas) [TaxId: 4120]

Probab=100.00  E-value=1.2e-107  Score=830.08  Aligned_cols=215  Identities=44%  Similarity=0.866  Sum_probs=210.2

Q ss_pred             CCCCCCCCCCccEEEEeecceecCCccccCHHHHHHHHHHHHhcCcceEEEeeeeeeeecCCCccccchHHHHHHHHHHH
Q 012883          239 HEDDFTGTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIRE  318 (454)
Q Consensus       239 ~~~~~~~~~~VpVyVMLPLdvV~~~~~l~~~~al~a~L~aLK~~GVdGVmVDVWWGiVE~~~P~qYdWSgY~~Lf~mir~  318 (454)
                      ...+.+.++|||||||||||+|+.+|+|+|+++|+++|++||++|||||||||||||||+++|++|||+||++||+|||+
T Consensus         3 ~~g~~~~~~yVpVyVMLPLd~V~~~~~~~~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~P~~YdWsgY~~l~~mvr~   82 (498)
T d1fa2a_           3 IPGVMPIGNYVSLYVMLPLGVVNADNVFPDKEKVEDELKQVKAGGCDGVMVDVWWGIIEAKGPKQYDWSAYRELFQLVKK   82 (498)
T ss_dssp             CTTCCCGGGCCEEEEECCTTSSCSSSCCCCHHHHHHHHHHHHHTTCCEEEEEEEHHHHTCSBTTBCCCHHHHHHHHHHHH
T ss_pred             CCCcccccCcceEEEEeecceecCCCccCCHHHHHHHHHHHHHcCCcEEEEeeeeeEeecCCCCccCcHHHHHHHHHHHH
Confidence            34567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceEEEEEeeccCCCCCCCcccccchHHHhhhcCCCCeEEecCCCCccCceeeeecCcccccCCCchhHhhHHHHHHH
Q 012883          319 FNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSF  398 (454)
Q Consensus       319 ~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~npDIfyTDrsG~Rn~EcLSlgvD~~pVL~GRTpiq~Y~DFMrSF  398 (454)
                      +|||||||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||+|++|||+||||||||+|||+||
T Consensus        83 ~GLKlq~vmSFHqCGGNVGD~v~IPLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSl~~D~~pvl~GRTplq~Y~DFm~SF  162 (498)
T d1fa2a_          83 CGLKIQAIMSFHQCGGNVGDAVFIPIPQWILQIGDKNPDIFYTNRAGNRNQEYLSLGVDNQRLFQGRTALEMYRDFMESF  162 (498)
T ss_dssp             TTCEEEEEEECSCBCCCTTCCCCBCSCHHHHHHTTTCGGGEEECTTCCEEEEEECGGGTTCEEETTEEHHHHHHHHHHHH
T ss_pred             cCCeeEEEEeecccCCCCCCccccCCcHHHHhhhccCCCceEEcCCCCcccceeeeecccccccCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhcccceeEEEecccCcccccCCCCCCCCCCcCCccceecccCchhhcC
Q 012883          399 RTEFDDLFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGIGEFQIFTAKSTES  453 (454)
Q Consensus       399 r~~F~d~l~~g~I~eI~VGLGPaGELRYPSYp~~~GW~yPGiGEFQCYDkyml~s  453 (454)
                      |++|++|+++++|+||+|||||||||||||||+++||+||||||||||||||+++
T Consensus       163 r~~F~~~l~~g~I~eI~VGlGP~GELRYPSYp~~~GW~fPGiGEFQCYDky~~~~  217 (498)
T d1fa2a_         163 RDNMADFLKAGDIVDIEVGCGAAGELRYPSYPETQGWVFPGIGEFQCYDKYMVAD  217 (498)
T ss_dssp             HHHSHHHHHHTCEEEEEECCSGGGBSSCCCSCGGGTCCTTCCCCCCCCSHHHHHH
T ss_pred             HHHHHHhccCCceEEEEeccccCcCccCCCCccccCCcCCCcceeeeCcHHHHHH
Confidence            9999999977899999999999999999999999999999999999999999975
>d1wdpa1 c.1.8.1 (A:6-495) beta-Amylase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
>d1b1ya_ c.1.8.1 (A:) beta-Amylase {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1vema2 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1tg7a5 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-terminal domain {Penicillium sp. [TaxId: 5081]} Back     information, alignment and structure
>d1hjsa_ c.1.8.3 (A:) Beta-1,4-galactanase {Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]} Back     information, alignment and structure
>d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Back     information, alignment and structure
>d1ecea_ c.1.8.3 (A:) Endocellulase E1 {Acidothermus cellulolyticus [TaxId: 28049]} Back     information, alignment and structure
>d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2j78a1 c.1.8.4 (A:3-445) Beta-glucosidase A {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1h4pa_ c.1.8.3 (A:) Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1uuqa_ c.1.8.3 (A:) Exomannosidase {Cellvibrio mixtus [TaxId: 39650]} Back     information, alignment and structure
>d1n82a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Ixt6 [TaxId: 1422]} Back     information, alignment and structure
>d2c0ha1 c.1.8.3 (A:18-367) endo-1,4-beta-mannosidase {Blue mussel (Mytilus edulis) [TaxId: 6550]} Back     information, alignment and structure
>d1e4ia_ c.1.8.4 (A:) Beta-glucosidase A {Bacillus polymyxa [TaxId: 1406]} Back     information, alignment and structure
>d1gnxa_ c.1.8.4 (A:) Beta-glucosidase A {Streptomyces sp. [TaxId: 1931]} Back     information, alignment and structure
>d1vffa1 c.1.8.4 (A:1-423) Beta-glucosidase A {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1ug6a_ c.1.8.4 (A:) Beta-glucosidase A {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]} Back     information, alignment and structure
>d1pbga_ c.1.8.4 (A:) 6-phospho-beta-D-galactosidase, PGAL {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1wcga1 c.1.8.4 (A:3-464) Thioglucosidase {Cabbage aphid (Brevicoryne brassicae) [TaxId: 69196]} Back     information, alignment and structure
>d1v02a_ c.1.8.4 (A:) Plant beta-glucosidase (myrosinase) {Sorghum bicolor [TaxId: 4558]} Back     information, alignment and structure
>d1xyza_ c.1.8.3 (A:) Xylanase {Clostridium thermocellum, XynZ [TaxId: 1515]} Back     information, alignment and structure
>d1cbga_ c.1.8.4 (A:) Plant beta-glucosidase (myrosinase) {Creeping white clover (Trifolium repens) [TaxId: 3899]} Back     information, alignment and structure
>d1h1na_ c.1.8.3 (A:) Endocellulase EngI {Thermoascus aurantiacus [TaxId: 5087]} Back     information, alignment and structure
>d1edga_ c.1.8.3 (A:) Endoglucanase CelA {Clostridium cellulolyticum [TaxId: 1521]} Back     information, alignment and structure
>d1us3a2 c.1.8.3 (A:243-606) Xylanase 10c {Cellvibrio japonicus [TaxId: 155077]} Back     information, alignment and structure
>d1wkya2 c.1.8.3 (A:34-330) Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 244966]} Back     information, alignment and structure
>d1qoxa_ c.1.8.4 (A:) Beta-glucosidase A {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} Back     information, alignment and structure
>d1qnra_ c.1.8.3 (A:) Beta-mannanase {Trichoderma reesei [TaxId: 51453]} Back     information, alignment and structure
>d1vbua1 c.1.8.3 (A:517-840) Xylanase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1nq6a_ c.1.8.3 (A:) Xylanase A, catalytic core {Streptomyces halstedii [TaxId: 1944]} Back     information, alignment and structure
>d1fh9a_ c.1.8.3 (A:) Xylanase A, catalytic core {Cellulomonas fimi [TaxId: 1708]} Back     information, alignment and structure
>d1uhva2 c.1.8.3 (A:14-359) Beta-D-xylosidase, catalytic domain {Thermoanaerobacterium saccharolyticum [TaxId: 28896]} Back     information, alignment and structure
>d1e4mm_ c.1.8.4 (M:) Plant beta-glucosidase (myrosinase) {White mustard (Sinapis alba) [TaxId: 3728]} Back     information, alignment and structure
>d1i1wa_ c.1.8.3 (A:) Xylanase A, catalytic core {Thermoascus aurantiacus [TaxId: 5087]} Back     information, alignment and structure
>d1ta3b_ c.1.8.3 (B:) Xylanase A, catalytic core {Emericella nidulans (Aspergillus nidulans) [TaxId: 162425]} Back     information, alignment and structure
>d1v0la_ c.1.8.3 (A:) Xylanase A, catalytic core {Streptomyces lividans [TaxId: 1916]} Back     information, alignment and structure
>d1r85a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Xt6 [TaxId: 1422]} Back     information, alignment and structure
>d1ur1a_ c.1.8.3 (A:) Xylanase {Cellvibrio mixtus [TaxId: 39650]} Back     information, alignment and structure
>d1bqca_ c.1.8.3 (A:) Beta-mannanase {Thermomonospora fusca [TaxId: 2021]} Back     information, alignment and structure
>d7a3ha_ c.1.8.3 (A:) Endoglucanase Cel5a {Bacillus agaradhaerens [TaxId: 76935]} Back     information, alignment and structure
>d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]} Back     information, alignment and structure
>d1geha1 c.1.14.1 (A:137-443) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Thermococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d1zy9a2 c.1.8.13 (A:178-525) Alpha-galactosidase GalA catalytic domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus oryzae, Taka-amylase [TaxId: 5062]} Back     information, alignment and structure
>d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} Back     information, alignment and structure
>d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]} Back     information, alignment and structure
>d2vzsa5 c.1.8.3 (A:336-674) Exochitosanase CsxA {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1w32a_ c.1.8.3 (A:) Xylanase A, catalytic core {Pseudomonas fluorescens [TaxId: 294]} Back     information, alignment and structure
>d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]} Back     information, alignment and structure