Citrus Sinensis ID: 012897

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450----
Protein Sequence
MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNFS
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHccccccccHHHHHHHHcHHccccHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHHHHccccccHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
HHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHcccHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccEcccccccccccccccc
Coil and Loop (DISEMBL)
mvagvwsddsslqLEATTQFRKLLsiersppieeviqsgvvprfVEFLMREDYPQLQFEAAWALTniasgtsentkvvidhgAVPIFVKLlaspsddvREQAVWALGnvagdsprcrdLVLSQGALIPLLAQLNERAKLSMLRNATWtlsnfcrgkpqppfdqvrpalpALAQLvhsndeevLTDACWALsylsdgtnDKIQAVIEAGVCPRLvellghpspsvlipalrtvgnivtgddfqtqciitygALPYLLGLLTHSHKKSIKKEACWTisnitagnrDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISnatsggthEQIKYLVREgcikplcdlfvcpdpriVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIEnlqshdnnEIYEKAVKILETYwleeddetiaagdgpqpgfpyagnevqvpsggfnfs
Flexible Loop (DISEMBL)
mvagvwsddsslqlEATTQFRKllsiersppieeviqsgVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALgnvagdspRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIenlqshdnneiYEKAVKILETYWLEEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNFS
Low Complexity Region (SEG)
MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNFS
Disordered region (IsUnstruct)
*******************FRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP**PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDD******************************
Disordered Region (DISOPRED)
MVAG***DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKN**T*TADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDETI***********************FNF*
Disordered Region (DISEMBL)
*********SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNFS
Disordered Region (DISPRO)
MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEE********************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNFS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	454	2.2.26 [Sep-21-2011]
Q96321	532	Importin subunit alpha-1	yes	no	0.997	0.851	0.831	0.0
Q9SLX0	534	Importin subunit alpha-1b	yes	no	0.993	0.844	0.810	0.0
Q71VM4	526	Importin subunit alpha-1a	no	no	0.940	0.811	0.853	0.0
O22478	527	Importin subunit alpha OS	N/A	no	0.991	0.853	0.799	0.0
O04294	531	Importin subunit alpha-2	no	no	0.991	0.847	0.726	0.0
Q76P29	516	Importin subunit alpha-B	yes	no	0.962	0.846	0.613	1e-155
O35345	536	Importin subunit alpha-7	yes	no	0.988	0.837	0.607	1e-147
Q0V7M0	536	Importin subunit alpha-7	yes	no	0.988	0.837	0.605	1e-146
Q5RBV0	536	Importin subunit alpha-7	yes	no	0.988	0.837	0.605	1e-146
O60684	536	Importin subunit alpha-7	yes	no	0.988	0.837	0.605	1e-146

>sp|Q96321|IMA1_ARATH Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2

 Score =  780 bits (2014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/457 (83%), Positives = 413/457 (90%), Gaps = 4/457 (0%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           MVAGVWSDD +LQLE+TTQFRKLLSIERSPPIEEVI +GVVPRFVEFL +EDYP +QFEA
Sbjct: 77  MVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPRFVEFLKKEDYPAIQFEA 136

Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTS++TKVVIDH AVPIFV+LLASPSDDVREQAVWALGNVAGDSPRCRDLV
Sbjct: 137 AWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAVWALGNVAGDSPRCRDLV 196

Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 180
           L  GAL+PLL QLNE AKLSMLRNATWTLSNFCRGKPQP FDQV+PALPAL +L+HS+DE
Sbjct: 197 LGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQVKPALPALERLIHSDDE 256

Query: 181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240
           EVLTDACWALSYLSDGTNDKIQ VI+AGV P+LVELL H SPSVLIPALRTVGNIVTGDD
Sbjct: 257 EVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPSVLIPALRTVGNIVTGDD 316

Query: 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 300
            QTQC+I  GALP L  LLT +HKKSIKKEACWTISNITAGN+DQIQ V++A L+ PLV+
Sbjct: 317 IQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNKDQIQTVVEANLISPLVS 376

Query: 301 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL 360
           LLQNAEFDIKKEAAWAISNATSGG+H+QIKYLV +GCIKPLCDL VCPDPRI+TVCLEGL
Sbjct: 377 LLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVEQGCIKPLCDLLVCPDPRIITVCLEGL 436

Query: 361 ENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 420
           ENILKVGEAEKN+G  T D+N YAQL+++AEGLEKIENLQSHDNNEIYEKAVKILETYWL
Sbjct: 437 ENILKVGEAEKNLGH-TGDMNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWL 495

Query: 421 -EEDDETIA--AGDGPQPGFPYAGNEVQVPSGGFNFS 454
            EEDDET      DG Q GF + GN+  VPSGGFNFS
Sbjct: 496 EEEDDETQQPPGVDGSQAGFQFGGNQAPVPSGGFNFS 532

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs (By similarity). Cellular receptor for the nuclear import of the virD2 protein of Agrobacterium.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/453 (81%), Positives = 407/453 (89%), Gaps = 2/453 (0%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           MV  V SDDS++QLEATTQFRKLLSIERSPPIEEVI +GVVPRF+ FL REDYPQLQFEA
Sbjct: 83  MVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVINTGVVPRFIAFLQREDYPQLQFEA 142

Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTS+NTKVV++ GAVPIFVKLL+SPS+DVREQAVWALGNVAGDSP+CRDLV
Sbjct: 143 AWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDVREQAVWALGNVAGDSPKCRDLV 202

Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 180
           L+ G L PLL QLNE AKLSMLRNATWTLSNFCRGKPQP F+QV+PAL AL +L+HS DE
Sbjct: 203 LASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQPNFEQVKPALSALQRLIHSQDE 262

Query: 181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240
           EVLTDACWALSYLSDGTNDKIQAVIE+GV PRLVELL HPS SVLIPALRTVGNIVTGDD
Sbjct: 263 EVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVELLMHPSASVLIPALRTVGNIVTGDD 322

Query: 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 300
            QTQC+I + ALP LL LLT++HKKSIKKEACWTISNITAGNR+QIQAVI+A ++ PLV+
Sbjct: 323 MQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNREQIQAVINANIIAPLVH 382

Query: 301 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL 360
           LLQ AEFDIKKEAAWAISNATSGGTH+QIKYLV +GCIKPLCDL VCPDPRIVTVCLEGL
Sbjct: 383 LLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVAQGCIKPLCDLLVCPDPRIVTVCLEGL 442

Query: 361 ENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 420
           ENILKVGEAEKN+G    DVN YAQ++++AEGLEKIENLQSHDN EIYEKAVK+LE+YWL
Sbjct: 443 ENILKVGEAEKNLG--AGDVNSYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKMLESYWL 500

Query: 421 EEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNF 453
           EE+D+ + +GD  Q GF +   +  VPSGGFNF
Sbjct: 501 EEEDDAMPSGDNAQNGFNFGNQQPNVPSGGFNF 533

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. In conjunction with importin beta-1, mediates the nuclear envelope docking, and the subsequent translocation into the nucleus of the constitutive morphogenetic 1 (COP1) protein containing bipartite NLS motif.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/429 (85%), Positives = 399/429 (93%), Gaps = 2/429 (0%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           M+ GV+SDD++LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFV+FL RED+PQLQFEA
Sbjct: 77  MIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEA 136

Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTSENTKVVIDHGAVPIFVKLL S SDDVREQAVWALGNVAGDSP+CRDLV
Sbjct: 137 AWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLV 196

Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 180
           L+ GAL+PLLAQLNE  KLSMLRNATWTLSNFCRGKPQP F+Q RPALPALA+L+HSNDE
Sbjct: 197 LANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDE 256

Query: 181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240
           EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPALRTVGNIVTGDD
Sbjct: 257 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDD 316

Query: 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 300
            QTQCII + ALP LL LLT + KKSIKKEACWTISNITAGN+DQIQAVI+AG++GPLVN
Sbjct: 317 AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVN 376

Query: 301 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL 360
           LLQ AEFDIKKEAAWAISNATSGG+H+QIKYLV EGCIKPLCDL +CPD RIVTVCLEGL
Sbjct: 377 LLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGL 436

Query: 361 ENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 420
           ENILKVGE +K +  A  DVN ++Q+++EAEGLEKIENLQSHDNNEIYEKAVKILE YW+
Sbjct: 437 ENILKVGETDKTL--AAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 494

Query: 421 EEDDETIAA 429
           +E+D+T+ A
Sbjct: 495 DEEDDTMGA 503

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O22478|IMA_SOLLC Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2

 Score =  753 bits (1945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/454 (79%), Positives = 407/454 (89%), Gaps = 4/454 (0%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           ++AGVWSDDSSLQLE TTQFRKLLSIER+PPIEEVIQSGVVPRFVEFL R+DYPQLQFEA
Sbjct: 78  LIAGVWSDDSSLQLECTTQFRKLLSIERNPPIEEVIQSGVVPRFVEFLARDDYPQLQFEA 137

Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTSENTKVVID+G+VPIF++LL+SPSDDVREQAVWALGN+AGDSP+ RDLV
Sbjct: 138 AWALTNIASGTSENTKVVIDYGSVPIFIRLLSSPSDDVREQAVWALGNIAGDSPKYRDLV 197

Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 180
           L  GAL+ LLAQ NE+AKLSMLRNATWTLSNFCRGKPQP F+Q + ALP L +L+HSNDE
Sbjct: 198 LGHGALVALLAQFNEQAKLSMLRNATWTLSNFCRGKPQPLFEQTKAALPTLGRLIHSNDE 257

Query: 181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240
           EVLTDACWALSYLSDGTNDKIQAVIEAGVC RLVELL H SPSVLIPALRTVGNIVTGDD
Sbjct: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLVELLLHSSPSVLIPALRTVGNIVTGDD 317

Query: 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 300
            QTQ +I + ALP L+ LLT ++KKSIKKEACWTISNITAGNR+QIQ VI+AG++ PLV 
Sbjct: 318 IQTQVMIDHHALPCLVNLLTQNYKKSIKKEACWTISNITAGNRNQIQIVIEAGIIAPLVY 377

Query: 301 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL 360
           LLQNAEF+IKKEAAWAISNATSGG H+QIK+LV +GCIKPLCDL VCPDPRIVTVCLEGL
Sbjct: 378 LLQNAEFEIKKEAAWAISNATSGGNHDQIKFLVSQGCIKPLCDLLVCPDPRIVTVCLEGL 437

Query: 361 ENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 420
           ENILK+GEA+K++G  T  VN YAQL++EAEGLEKIENLQSHDN EIYEKAVKILETYWL
Sbjct: 438 ENILKIGEADKDLGN-TEGVNVYAQLIDEAEGLEKIENLQSHDNTEIYEKAVKILETYWL 496

Query: 421 EEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNFS 454
           EE+D  ++  +     F + G ++ +PSGGFNFS
Sbjct: 497 EEEDVPVSLNEDQ---FEFGGADISLPSGGFNFS 527

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Solanum lycopersicum (taxid: 4081)

>sp|O04294|IMA2_ARATH Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/454 (72%), Positives = 385/454 (84%), Gaps = 4/454 (0%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           MVAG+WS+DS+ QLEAT   RKLLSIE++PPI EV+QSGVVPR V+FL R+D+P+LQFEA
Sbjct: 80  MVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVVPRVVKFLSRDDFPKLQFEA 139

Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTSENT V+I+ GAVPIF++LL+S S+DVREQAVWALGNVAGDSP+CRDLV
Sbjct: 140 AWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQAVWALGNVAGDSPKCRDLV 199

Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 180
           LS GA+ PLL+Q NE  KLSMLRNATWTLSNFCRGKP P F+Q +PALP L +LV S DE
Sbjct: 200 LSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAFEQTQPALPVLERLVQSMDE 259

Query: 181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240
           EVLTDACWALSYLSD +NDKIQAVIEAGV PRL++LLGH SPSVLIPALRT+GNIVTGDD
Sbjct: 260 EVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSSPSVLIPALRTIGNIVTGDD 319

Query: 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 300
            QTQ ++   ALP LL LL +++KKSIKKEACWTISNITAGN DQIQAVIDAG++  LV 
Sbjct: 320 LQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAGNADQIQAVIDAGIIQSLVW 379

Query: 301 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL 360
           +LQ+AEF++KKEAAW ISNATSGGTH+QIK++V +GCIKPLCDL  CPD ++VTVCLE L
Sbjct: 380 VLQSAEFEVKKEAAWGISNATSGGTHDQIKFMVSQGCIKPLCDLLTCPDLKVVTVCLEAL 439

Query: 361 ENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW- 419
           ENIL VGEAEKN+G  T + N YAQ+++EAEGLEKIENLQSHDNN+IY+KAVKILET+W 
Sbjct: 440 ENILVVGEAEKNLG-HTGEDNLYAQMIDEAEGLEKIENLQSHDNNDIYDKAVKILETFWT 498

Query: 420 LEEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNF 453
            + ++E       PQ GF +      VP G FNF
Sbjct: 499 EDNEEEGNDENHAPQSGFQFGS--TNVPPGQFNF 530

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q76P29|IMAB_DICDI Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1

 Score =  546 bits (1408), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 273/445 (61%), Positives = 345/445 (77%), Gaps = 8/445 (1%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           +VA + S++  L L++TT FRKLLSIE+SPPIEEVI++G+VPR V+FL  +D+PQLQFEA
Sbjct: 72  LVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLYMQDFPQLQFEA 131

Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGT E T+VVI++GA+ +FV LL+SP DDVREQAVWALGN+AGDS  CRDLV
Sbjct: 132 AWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNIAGDSHYCRDLV 191

Query: 121 LSQGALIPLLAQLNERA--KLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN 178
           LS  AL PLL+ L   A  K+SM+RNATWTLSNFCRGKPQPPF+ VR +LP LA+L++  
Sbjct: 192 LSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRASLPVLAKLIYYQ 251

Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
           DEEVL DACWALSYLSDG+N++IQ VI+A VC ++VELLGHP+ +V  PALRT+GNIVTG
Sbjct: 252 DEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQTPALRTIGNIVTG 311

Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
           DD QTQ +++  AL +LL LL  S K++I+KEACWTISNITAG+++QIQ VIDA ++  L
Sbjct: 312 DDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQIQQVIDANIIPSL 370

Query: 299 VNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE 358
           V LL NAEF+I+KEAAWAISNATS GT +QI +LV +GC+KPLCDL    DPRI+ V LE
Sbjct: 371 VYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKVSDPRIINVALE 430

Query: 359 GLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETY 418
           G+ENIL  G+ E  +      VN Y +++E+A+GL KI +LQ H N + +EK  +I+ TY
Sbjct: 431 GIENILVAGKKEAQV----TGVNPYKKIIEDADGLGKIYDLQHHMNKDTFEKVSRIISTY 486

Query: 419 WL-EEDDETIAAGDGPQPGFPYAGN 442
              E++DE     +G    F    N
Sbjct: 487 LEDEQEDEGDLMPEGSSFSFSNQTN 511

Functions in nuclear protein import via a substrate-importin alpha-beta transport complex that passes though the nuclear pore complexes (NPC). Binds specifically and directly to substrates containing either a simple or bipartite NLS motif.

Dictyostelium discoideum (taxid: 44689)

>sp|O35345|IMA7_MOUSE Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 PE=1 SV=2

 Score =  523 bits (1346), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 277/456 (60%), Positives = 332/456 (72%), Gaps = 7/456 (1%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQFE 59
           MV  ++SDDS LQL  T +FRKLLS E SPPI+EVI + GVV RFVEFL R +   LQFE
Sbjct: 85  MVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFE 144

Query: 60  AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 119
           AAWALTNIASGTS+ TK+VI+ GAVPIF++LL S  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSLCRDY 204

Query: 120 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSN 178
           VL+   L PLL  L +  +L+M RNA W LSN CRGK P P F +V P LP L++L+ S+
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
           D ++L DACWALSYLSDG N+KIQAVI++GVC RLVELL H    V  PALR VGNIVTG
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTG 324

Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
           DD QTQ I+   ALP LL LL+ S K+SI+KEACWTISNITAGNR QIQAVIDA +   L
Sbjct: 325 DDIQTQVILNCSALPCLLHLLS-SSKESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 299 VNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE 358
           + +LQ AEF  +KEAAWAI+NATSGGT EQI+YLV  GCIKPLCDL    D +IV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 359 GLENILKVGEAE-KNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILET 417
           GLENIL++GE E K  G+    VN Y  L+EEA GL+KIE LQSH+N EIY+KA  ++E 
Sbjct: 444 GLENILRLGEQESKRSGSG---VNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 500

Query: 418 YWLEEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNF 453
           Y+  EDD++  A    +    +   + + P  GF  
Sbjct: 501 YFGVEDDDSSLAPQVDETQQQFIFQQPEAPMEGFQL 536

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

>sp|Q0V7M0|IMA7_BOVIN Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1

 Score =  519 bits (1336), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 276/456 (60%), Positives = 331/456 (72%), Gaps = 7/456 (1%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQFE 59
           MV  ++SDD  LQL  T +FRKLLS E SPPI+EVI + GVV RFVEFL R +   LQFE
Sbjct: 85  MVEMLFSDDPDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFE 144

Query: 60  AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 119
           AAWALTNIASGTS+ TK+VI+ GAVPIF++LL S  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDY 204

Query: 120 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSN 178
           VL+   L PLL  L +  +L+M RNA W LSN CRGK P P F +V P LP L++L+ S+
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
           D ++L DACWALSYLSDG N+KIQAVI++GVC RLVELL H    V  PALR VGNIVTG
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDNKVASPALRAVGNIVTG 324

Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
           DD QTQ I+   ALP LL LL+ S K+SI+KEACWTISNITAGNR QIQAVIDA +   L
Sbjct: 325 DDIQTQVILNCSALPCLLHLLS-SSKESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 299 VNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE 358
           + +LQ AEF  +KEAAWAI+NATSGGT EQI+YLV  GCIKPLCDL    D +IV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 359 GLENILKVGEAE-KNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILET 417
           GLENIL++GE E K  G+    VN Y  L+EEA GL+KIE LQSH+N EIY+KA  ++E 
Sbjct: 444 GLENILRLGEQEGKRSGSG---VNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 500

Query: 418 YWLEEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNF 453
           Y+  EDD++  A    +    +   + + P  GF  
Sbjct: 501 YFGVEDDDSSLAPQVDETQQQFIFQQPEAPMEGFQL 536

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Bos taurus (taxid: 9913)

>sp|Q5RBV0|IMA7_PONAB Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 PE=2 SV=1

 Score =  518 bits (1333), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 276/456 (60%), Positives = 331/456 (72%), Gaps = 7/456 (1%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQFE 59
           MV  ++SDDS LQL  T +FRKLLS E SPPI+EVI +  VV RFVEFL R +   LQFE
Sbjct: 85  MVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFE 144

Query: 60  AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 119
           AAWALTNIASGTS+ TK+VI+ GAVPIF++LL S  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDY 204

Query: 120 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSN 178
           VL+   L PLL  L +  +L+M RNA W LSN CRGK P P F +V P LP L++L+ S+
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
           D ++L DACWALSYLSDG N+KIQAVI++GVC RLVELL H    V  PALR VGNIVTG
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTG 324

Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
           DD QTQ I+   ALP LL LL+ S K+SI+KEACWTISNITAGNR QIQAVIDA +   L
Sbjct: 325 DDIQTQVILNCSALPCLLHLLS-SPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 299 VNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE 358
           + +LQ AEF  +KEAAWAI+NATSGGT EQI+YLV  GCIKPLCDL    D +IV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 359 GLENILKVGEAE-KNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILET 417
           GLENIL++GE E K  G+    VN Y  L+EEA GL+KIE LQSH+N EIY+KA  ++E 
Sbjct: 444 GLENILRLGEQEGKRSGSG---VNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 500

Query: 418 YWLEEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNF 453
           Y+  EDD++  A    +    +   + + P  GF  
Sbjct: 501 YFGVEDDDSSLAPQVDETQQQFIFQQPEAPMEGFQL 536

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Pongo abelii (taxid: 9601)

>sp|O60684|IMA7_HUMAN Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 PE=1 SV=1

 Score =  518 bits (1333), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 276/456 (60%), Positives = 331/456 (72%), Gaps = 7/456 (1%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQFE 59
           MV  ++SDDS LQL  T +FRKLLS E SPPI+EVI +  VV RFVEFL R +   LQFE
Sbjct: 85  MVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFE 144

Query: 60  AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 119
           AAWALTNIASGTS+ TK+VI+ GAVPIF++LL S  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDY 204

Query: 120 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSN 178
           VL+   L PLL  L +  +L+M RNA W LSN CRGK P P F +V P LP L++L+ S+
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
           D ++L DACWALSYLSDG N+KIQAVI++GVC RLVELL H    V  PALR VGNIVTG
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTG 324

Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
           DD QTQ I+   ALP LL LL+ S K+SI+KEACWTISNITAGNR QIQAVIDA +   L
Sbjct: 325 DDIQTQVILNCSALPCLLHLLS-SPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 299 VNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE 358
           + +LQ AEF  +KEAAWAI+NATSGGT EQI+YLV  GCIKPLCDL    D +IV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 359 GLENILKVGEAE-KNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILET 417
           GLENIL++GE E K  G+    VN Y  L+EEA GL+KIE LQSH+N EIY+KA  ++E 
Sbjct: 444 GLENILRLGEQEGKRSGSG---VNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 500

Query: 418 YWLEEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNF 453
           Y+  EDD++  A    +    +   + + P  GF  
Sbjct: 501 YFGVEDDDSSLAPQVDETQQQFIFQQPEAPMEGFQL 536

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	454
225431871	529	PREDICTED: importin subunit alpha-1 [Vit	0.997	0.856	0.889	0.0
356556046	531	PREDICTED: importin subunit alpha-1-like	0.997	0.853	0.894	0.0
356529274	531	PREDICTED: importin subunit alpha-1-like	0.997	0.853	0.889	0.0
356564581	530	PREDICTED: importin subunit alpha-1-like	0.997	0.854	0.885	0.0
224130302	529	predicted protein [Populus trichocarpa]	0.995	0.854	0.880	0.0
356521809	530	PREDICTED: LOW QUALITY PROTEIN: importin	0.997	0.854	0.874	0.0
224110258	529	predicted protein [Populus trichocarpa]	0.995	0.854	0.876	0.0
119866037	529	Impa2 [Nicotiana benthamiana]	0.991	0.850	0.874	0.0
13752562	529	importin alpha 2 [Capsicum annuum]	0.991	0.850	0.871	0.0
449464730	530	PREDICTED: importin subunit alpha-1-like	0.997	0.854	0.874	0.0

>gi|225431871|ref|XP_002275593.1| PREDICTED: importin subunit alpha-1 [Vitis vinifera] gi|296083287|emb|CBI22923.3| unnamed protein product [Vitis vinifera]

 Score =  838 bits (2165), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/454 (88%), Positives = 429/454 (94%), Gaps = 1/454 (0%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           MVAGVWSD+SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFL+RED+PQLQFEA
Sbjct: 77  MVAGVWSDNSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEA 136

Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTSENTKVVIDHGAVPIFVKLL SPSDDVREQAVWALGNVAGDSPRCRDLV
Sbjct: 137 AWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLV 196

Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 180
           L  GALIPLLAQLNE AKLSMLRNATWTLSNFCRGKPQPPFDQV+PALPAL +LVHS+DE
Sbjct: 197 LGHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALERLVHSSDE 256

Query: 181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240
           EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPALRTVGNIVTGDD
Sbjct: 257 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDD 316

Query: 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 300
            QTQ II +GALP LL LLTH+HKKSIKKEACWTISNITAGN++QIQAVI+AG++ PLV+
Sbjct: 317 IQTQSIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIEAGVIAPLVH 376

Query: 301 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL 360
           LLQ AEFDIKKEAAWAISNATSGGTHEQIKYLV +GCIKPLCDL VCPDPRIVTVCLEGL
Sbjct: 377 LLQTAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGL 436

Query: 361 ENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 420
           ENILKVGEAEK +G  + DVN YAQL+++AEGLEKIENLQSHDNNEIYEKAVKILETYWL
Sbjct: 437 ENILKVGEAEKTLGN-SGDVNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWL 495

Query: 421 EEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNFS 454
           EE+DET+ +GDG QPGF + GN+V VPSGGFNFS
Sbjct: 496 EEEDETLPSGDGSQPGFQFGGNDVSVPSGGFNFS 529

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556046|ref|XP_003546338.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  837 bits (2163), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/454 (89%), Positives = 429/454 (94%), Gaps = 1/454 (0%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           MVAGVWSDD+S QLEATTQFRKLLSIERSPPIEEVIQ+GVVPRFVEFL+RED+PQLQFEA
Sbjct: 79  MVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEA 138

Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTSENTKVVIDHGAVPIFVKLL+SPSDDVREQAVWALGNVAGDSPRCRDLV
Sbjct: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 198

Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 180
           LS GALIPLLAQLNE AKLSMLRNATWTLSNFCRGKPQPPF+QVR ALPAL +LV SNDE
Sbjct: 199 LSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRAALPALERLVFSNDE 258

Query: 181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240
           EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV+LL HPSPSVLIPALRTVGNIVTGDD
Sbjct: 259 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVQLLLHPSPSVLIPALRTVGNIVTGDD 318

Query: 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 300
            QTQ II +GALP LL LLTH+HKKSIKKEACWTISNITAGNRDQIQAVI+AGL+ PLVN
Sbjct: 319 MQTQTIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNRDQIQAVIEAGLIAPLVN 378

Query: 301 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL 360
           LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLV +GCIKPLCDL VCPDPRIVTVCLEGL
Sbjct: 379 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGL 438

Query: 361 ENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 420
           ENILKVGEAEK++G  T DVN YAQ+++EAEGLEKIENLQSHDNNEIYEKAVKILETYWL
Sbjct: 439 ENILKVGEAEKSLGN-TGDVNLYAQMIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 497

Query: 421 EEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNFS 454
           E+DDET+ AGDG QPGF +  N++ VPSGGFNFS
Sbjct: 498 EDDDETLPAGDGAQPGFNFGNNDLPVPSGGFNFS 531

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529274|ref|XP_003533220.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  836 bits (2160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/454 (88%), Positives = 428/454 (94%), Gaps = 1/454 (0%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           MVAGVWSDD+S QLEATTQFRKLLSIERSPPIEEVIQ+GVVPRFVEFL+RED+PQLQFEA
Sbjct: 79  MVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEA 138

Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTSENTKVVIDHGAVPIFVKLL+SPSDDVREQAVWALGNVAGDSP+CRDLV
Sbjct: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPKCRDLV 198

Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 180
           LS GALIPLLAQLNE AKLSMLRNATWTLSNFCRGKPQPPF+QVR ALPAL +LV SNDE
Sbjct: 199 LSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRAALPALERLVFSNDE 258

Query: 181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240
           EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV+LL HPSPSVLIPALRTVGNIVTGDD
Sbjct: 259 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVQLLLHPSPSVLIPALRTVGNIVTGDD 318

Query: 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 300
            QTQ II +GALP LL LLTH+HKKSIKKEACWTISNITAGNRDQIQAV++AGL+ PLVN
Sbjct: 319 MQTQTIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNRDQIQAVVEAGLIAPLVN 378

Query: 301 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL 360
           LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLV +GCIKPLCDL VCPDPRIVTVCLEGL
Sbjct: 379 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGL 438

Query: 361 ENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 420
           ENILKVGEAEK+MG  + DVN YAQ+++EAEGLEKIENLQSHDNNEIYEKAVKILETYWL
Sbjct: 439 ENILKVGEAEKSMGN-SGDVNLYAQMIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 497

Query: 421 EEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNFS 454
           E+DDET+  GDG QPGF +  N+V VPSGGFNFS
Sbjct: 498 EDDDETLPTGDGAQPGFNFGNNDVPVPSGGFNFS 531

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564581|ref|XP_003550530.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  835 bits (2158), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/454 (88%), Positives = 431/454 (94%), Gaps = 1/454 (0%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           MVAGVWSDD+S+QLEATTQFRKLLSIERSPPIEEVIQ+GVVPRFVEFL+RED+PQLQFEA
Sbjct: 78  MVAGVWSDDNSIQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEA 137

Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTSENTKVVIDHGAVPIFVKLL+SPSDDVREQAVWALGNVAGDSPRCRDLV
Sbjct: 138 AWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 197

Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 180
           LSQGAL+PLLAQLNE AKLSMLRNATWTLSNFCRGKPQPPF+QVRPALPAL +LV SNDE
Sbjct: 198 LSQGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVFSNDE 257

Query: 181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240
           EVLTDACWALSYLSDGTNDKIQAVIEAGVC RLV+LL HPSPSVLIPALRTVGNIVTGDD
Sbjct: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVCARLVQLLIHPSPSVLIPALRTVGNIVTGDD 317

Query: 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 300
            QTQCII +GALP LL LLT++HKKSIKKEACWTISNITAGN++QIQ VI+AGLV PLVN
Sbjct: 318 MQTQCIINHGALPCLLNLLTNNHKKSIKKEACWTISNITAGNKEQIQTVIEAGLVAPLVN 377

Query: 301 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL 360
           LLQNAEFDIKKEAAWAISNATSGG HEQIKYLV +GCIKPLCDL VCPDPRIVTVCLEGL
Sbjct: 378 LLQNAEFDIKKEAAWAISNATSGGIHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGL 437

Query: 361 ENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 420
           ENILKVGEAEK++G  T DVN+YAQ++++AEGLEKIENLQSHDNNEIYEKAVKILETYWL
Sbjct: 438 ENILKVGEAEKSLGN-TGDVNEYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWL 496

Query: 421 EEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNFS 454
           EE+DET+ +GDG QPGF +  NE+ VPSGGFNFS
Sbjct: 497 EEEDETLPSGDGAQPGFNFGNNELPVPSGGFNFS 530

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130302|ref|XP_002328576.1| predicted protein [Populus trichocarpa] gi|222838558|gb|EEE76923.1| predicted protein [Populus trichocarpa]

 Score =  830 bits (2145), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/453 (88%), Positives = 426/453 (94%), Gaps = 1/453 (0%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           MV+GVWSDDS+LQLEATTQFRKLLSIERSPPIEEVIQ+GVVPRFVE L+RED+PQLQFEA
Sbjct: 78  MVSGVWSDDSNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVELLVREDFPQLQFEA 137

Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTSENTKVVIDHGAVPIFVKLL SPSDDVREQAVWALGNVAGDSP+CRDLV
Sbjct: 138 AWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPKCRDLV 197

Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 180
           LS GALIPLLAQLNE AKLSMLRNATWTLSNFCRGKPQP F++VRPALPAL +LVHS DE
Sbjct: 198 LSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPLFEKVRPALPALERLVHSTDE 257

Query: 181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240
           EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVL+PALRTVGNIVTGDD
Sbjct: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLVPALRTVGNIVTGDD 317

Query: 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 300
            QTQCII  GALP LL LLTH+HKKSIKKEACWTISNITAGN++QIQAVI+AGL+GPLVN
Sbjct: 318 MQTQCIINTGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIEAGLIGPLVN 377

Query: 301 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL 360
           LLQNAEFDIKKEAAWA+SNATSGGTHEQIK+LV +GCIKPLCDL VCPDPRIVTVCLEGL
Sbjct: 378 LLQNAEFDIKKEAAWAVSNATSGGTHEQIKFLVSQGCIKPLCDLLVCPDPRIVTVCLEGL 437

Query: 361 ENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 420
           ENILKVGEAEKN+G  + DVN YAQ++++AEGLEKIENLQSHDNNEIYEKAVKILETYWL
Sbjct: 438 ENILKVGEAEKNLGN-SGDVNFYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWL 496

Query: 421 EEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNF 453
           EEDDE + +GDG Q GF +  N VQVPSGGFNF
Sbjct: 497 EEDDEALPSGDGAQQGFHFGENNVQVPSGGFNF 529

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521809|ref|XP_003529543.1| PREDICTED: LOW QUALITY PROTEIN: importin subunit alpha-1-like [Glycine max]

 Score =  829 bits (2141), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/454 (87%), Positives = 430/454 (94%), Gaps = 1/454 (0%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           MVAGVWS+D+SLQLEATTQFRKLLSIERSPPIEEVIQ+GVVPRFVEFL+RED+PQLQFEA
Sbjct: 78  MVAGVWSNDNSLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEA 137

Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTSENTKVVIDHGAVPIFVKLL+SPSDDVREQAVWALGNVAGDSPRCRDLV
Sbjct: 138 AWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 197

Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 180
           LS GAL+PLLAQLNE AKLSMLRNATWTLSNFCRGKPQPPF+QVRPALPAL +LV SNDE
Sbjct: 198 LSHGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVFSNDE 257

Query: 181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240
           EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL++LL HPSPSVLIPALRTVGNIVTGDD
Sbjct: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLMQLLMHPSPSVLIPALRTVGNIVTGDD 317

Query: 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 300
            QTQCII +GALP LL LLT++HKKSIKKEACWTISNITAGN++QIQ VI+AGLV PLVN
Sbjct: 318 MQTQCIINHGALPCLLNLLTNNHKKSIKKEACWTISNITAGNKEQIQTVIEAGLVAPLVN 377

Query: 301 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL 360
           LLQ+AEFDIKKEA+WAISNATSGGTH+QIKYLV +GC+KPLCDL VCPDPRIVTVCLEGL
Sbjct: 378 LLQSAEFDIKKEASWAISNATSGGTHDQIKYLVSQGCVKPLCDLLVCPDPRIVTVCLEGL 437

Query: 361 ENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 420
           ENILKVGEAEK++G  T DVN YAQ+++EAEGLEKIENLQSHDNNEIYEK VKILETYWL
Sbjct: 438 ENILKVGEAEKSLGN-TGDVNVYAQMIDEAEGLEKIENLQSHDNNEIYEKVVKILETYWL 496

Query: 421 EEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNFS 454
           EE+DET+ +G+G QPGF +  NE+ VPSGGFNFS
Sbjct: 497 EEEDETLPSGNGAQPGFNFGNNELPVPSGGFNFS 530

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110258|ref|XP_002315463.1| predicted protein [Populus trichocarpa] gi|222864503|gb|EEF01634.1| predicted protein [Populus trichocarpa]

 Score =  825 bits (2132), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/453 (87%), Positives = 426/453 (94%), Gaps = 1/453 (0%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           MVAGVWS+D +LQLE+TTQFRKLLSIERSPPIEEVIQ+GVVPRFVEFL+RED+PQLQFEA
Sbjct: 78  MVAGVWSEDGNLQLESTTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEA 137

Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTSENTKVVIDHGAVPIFVKLL SPSDDVREQAVWALGNVAGDSP+CRDLV
Sbjct: 138 AWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPKCRDLV 197

Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 180
           LS GALIPLLAQLNE AKLSMLRNATWTLSNFCRGKPQPPF+QVRPALPAL +LVHS DE
Sbjct: 198 LSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVHSTDE 257

Query: 181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240
           EVLTD+CWALSYLSDGT+DKIQAVIEAGVCPRLVELL HPSPSVL+PALRTVGNIVTGDD
Sbjct: 258 EVLTDSCWALSYLSDGTDDKIQAVIEAGVCPRLVELLLHPSPSVLVPALRTVGNIVTGDD 317

Query: 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 300
            QTQCIIT GALP LL LLTH+HKKSIKKEACWTISNITAGN++QIQAVI+ GL+GPLVN
Sbjct: 318 MQTQCIITTGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIENGLIGPLVN 377

Query: 301 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL 360
           LLQNAEFDIKKEAAWA+SNATSGGTHEQIK+LV +GCIKPLCDL V PDPRIVTV LEGL
Sbjct: 378 LLQNAEFDIKKEAAWAVSNATSGGTHEQIKFLVSQGCIKPLCDLLVSPDPRIVTVSLEGL 437

Query: 361 ENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 420
           ENILKVGEAEKN+G  + D N YAQ++++AEGLEKIENLQSHDNNEIYEKAVKILETYWL
Sbjct: 438 ENILKVGEAEKNLGN-SGDANFYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWL 496

Query: 421 EEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNF 453
           EEDDET+ +GDG Q GF + GN VQVPSGGFNF
Sbjct: 497 EEDDETLPSGDGAQQGFQFGGNGVQVPSGGFNF 529

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|119866037|gb|ABM05488.1| Impa2 [Nicotiana benthamiana]

 Score =  819 bits (2116), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/453 (87%), Positives = 421/453 (92%), Gaps = 3/453 (0%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           MVAGVWS+D++LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED+PQLQFEA
Sbjct: 79  MVAGVWSNDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDFPQLQFEA 138

Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTS+NT+VVIDHGAVPIFVKLL SPSDDVREQAVWALGNVAGDSPRCRDLV
Sbjct: 139 AWALTNIASGTSDNTRVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLV 198

Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 180
           LS GALIPLLAQLNE  KLSMLRNATWTLSNFCRGKPQPPF+QVRPAL AL +LVHSNDE
Sbjct: 199 LSNGALIPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPPFEQVRPALSALQRLVHSNDE 258

Query: 181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240
           EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPALRTVGNIVTGDD
Sbjct: 259 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLMHPSPSVLIPALRTVGNIVTGDD 318

Query: 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 300
            QTQCII +GAL  LL LLTH+HKKSIKKEACWTISNITAGN++QIQAVI+AGL+ PLVN
Sbjct: 319 LQTQCIIEHGALTCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIEAGLIAPLVN 378

Query: 301 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL 360
           LLQ AEFDIKKEAAWAISNATSGGTHEQIK+LV +GCIKPLCDL VCPDPRIVTVCLEGL
Sbjct: 379 LLQTAEFDIKKEAAWAISNATSGGTHEQIKFLVSQGCIKPLCDLLVCPDPRIVTVCLEGL 438

Query: 361 ENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 420
           ENILKVGEAEK     T  +N YAQL ++AEGLEKIENLQSHDNNEIYEKAVKILETYWL
Sbjct: 439 ENILKVGEAEK---ANTGGINYYAQLTDDAEGLEKIENLQSHDNNEIYEKAVKILETYWL 495

Query: 421 EEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNF 453
           EE+DET+ AGD  Q GF + GN++Q+PSGGF F
Sbjct: 496 EEEDETLPAGDEAQAGFNFGGNDIQLPSGGFKF 528

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13752562|gb|AAK38727.1|AF369707_1 importin alpha 2 [Capsicum annuum]

 Score =  815 bits (2106), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/453 (87%), Positives = 419/453 (92%), Gaps = 3/453 (0%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           MVAGVWS D++LQLEA TQFRKLLSIERSPPIEEVIQSGVVPRFVEFL+RED+PQLQFEA
Sbjct: 79  MVAGVWSTDNNLQLEANTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLLREDFPQLQFEA 138

Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTSENT+VVIDHGAVPIFVKLL SPSDDVREQAVWALGNVAGDSPRCRDLV
Sbjct: 139 AWALTNIASGTSENTRVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLV 198

Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 180
           LS GALIPLLAQLNE AKLSMLRNATWTLSNFCRGKPQPPF+QVRPAL AL +LVHS DE
Sbjct: 199 LSNGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALSALQRLVHSTDE 258

Query: 181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240
           EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPALRTVGNIVTGDD
Sbjct: 259 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLVHPSPSVLIPALRTVGNIVTGDD 318

Query: 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 300
            QTQCII +GALP LL LLTH+HKKSIKKEACWTISNITAGN++QIQAVI AGL+ PLVN
Sbjct: 319 LQTQCIIEHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIAAGLISPLVN 378

Query: 301 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL 360
           LLQ+AEFDIKKEAAWAISNATSGGTHEQIK+LV + CIKPLCDL VCPDPRIVTVCLEGL
Sbjct: 379 LLQSAEFDIKKEAAWAISNATSGGTHEQIKFLVSQNCIKPLCDLLVCPDPRIVTVCLEGL 438

Query: 361 ENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 420
           ENILKVGEAEK     T  +N YAQL ++AEGLEKIENLQSHDNNEIYEKAVKILETYWL
Sbjct: 439 ENILKVGEAEK---ANTGGINYYAQLTDDAEGLEKIENLQSHDNNEIYEKAVKILETYWL 495

Query: 421 EEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNF 453
           EE+DET+ AGDG Q  F + GN++Q+PSGGF F
Sbjct: 496 EEEDETLPAGDGTQNEFNFGGNDIQLPSGGFKF 528

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464730|ref|XP_004150082.1| PREDICTED: importin subunit alpha-1-like [Cucumis sativus] gi|449501502|ref|XP_004161385.1| PREDICTED: importin subunit alpha-1-like [Cucumis sativus]

 Score =  813 bits (2101), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/455 (87%), Positives = 424/455 (93%), Gaps = 2/455 (0%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           MVAGVWSD+SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFL+RED+PQLQFEA
Sbjct: 77  MVAGVWSDNSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEA 136

Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTSE+TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP CRDLV
Sbjct: 137 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPTCRDLV 196

Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 180
           L  GALIPLL+QLNE AKLSMLRNATWTLSNFCRGKPQPPFDQV+PALPAL +LVHSNDE
Sbjct: 197 LRHGALIPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALERLVHSNDE 256

Query: 181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240
           EVLTDACWALSYLSDGTNDKIQAVIEAGVC RLV+LL HPSPSVLIPALRTVGNIVTGDD
Sbjct: 257 EVLTDACWALSYLSDGTNDKIQAVIEAGVCGRLVQLLLHPSPSVLIPALRTVGNIVTGDD 316

Query: 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 300
            QTQ I+  GAL  LLG+ T +HKKSIKKEACWTISNITAGN++QIQAVI+A L+ PLVN
Sbjct: 317 IQTQWIVNDGALSCLLGIFTQNHKKSIKKEACWTISNITAGNKEQIQAVIEARLIPPLVN 376

Query: 301 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL 360
           LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLV +GCIKPLCDL VCPDPRIVTVCLEGL
Sbjct: 377 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGL 436

Query: 361 ENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 420
           ENILKVGEAEKN+GT   DVN YAQ++++AEGLEKIENLQSHDN+EIYEKAVKILETYWL
Sbjct: 437 ENILKVGEAEKNLGT-NGDVNLYAQMIDDAEGLEKIENLQSHDNHEIYEKAVKILETYWL 495

Query: 421 EEDDETIAAGD-GPQPGFPYAGNEVQVPSGGFNFS 454
           EE+DE + A D G QPGF + GNE+ VPSGGFNFS
Sbjct: 496 EEEDEALPATDGGAQPGFRFGGNELPVPSGGFNFS 530

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	454
TAIR|locus:505006475	535	IMPA-2 "importin alpha isoform	0.995	0.844	0.848	1.4e-206
TAIR|locus:2083313	532	IMPA-1 "importin alpha isoform	0.997	0.851	0.833	3e-204
TAIR|locus:2195351	538	IMPA-4 "AT1G09270" [Arabidopsi	0.995	0.840	0.774	4.3e-189
TAIR|locus:2132238	531	MOS6 "MODIFIER OF SNC1, 6" [Ar	0.991	0.847	0.729	2.1e-178
TAIR|locus:2196140	539	IMPA-6 "importin alpha isoform	0.995	0.838	0.716	9.6e-176
TAIR|locus:2155929	519	IMPA-5 "importin alpha isoform	0.958	0.838	0.669	3.1e-154
ASPGD|ASPL0000045550	553	kapA [Emericella nidulans (tax	0.982	0.806	0.639	1.5e-147
TAIR|locus:2078122	528	IMPA-7 "importin alpha isoform	0.936	0.804	0.662	1.3e-146
UNIPROTKB|G4MZS0	551	MGG_15072 "Importin subunit al	0.975	0.803	0.631	2.6e-143
DICTYBASE|DDB_G0272318	516	DDB_G0272318 "putative importi	0.922	0.812	0.632	3.9e-140

TAIR|locus:505006475 IMPA-2 "importin alpha isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1998 (708.4 bits), Expect = 1.4e-206, P = 1.4e-206
 Identities = 385/454 (84%), Positives = 414/454 (91%)

Query:     1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
             MV GVWSDD SLQLEATTQFRKLLSIERSPPIEEVI +GVVPRFVEFL REDYPQLQFEA
Sbjct:    82 MVGGVWSDDRSLQLEATTQFRKLLSIERSPPIEEVIDAGVVPRFVEFLTREDYPQLQFEA 141

Query:    61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
             AWALTNIASGTSENTKVVI+HGAVPIFV+LLAS SDDVREQAVWALGNVAGDSPRCRDLV
Sbjct:   142 AWALTNIASGTSENTKVVIEHGAVPIFVQLLASQSDDVREQAVWALGNVAGDSPRCRDLV 201

Query:   121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 180
             L QGALIPLL+QLNE AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPAL +L+HS DE
Sbjct:   202 LGQGALIPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALERLIHSTDE 261

Query:   181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240
             EVLTDACWALSYLSDGTNDKIQ+VIEAGV PRLVELL H SPSVLIPALR++GNIVTGDD
Sbjct:   262 EVLTDACWALSYLSDGTNDKIQSVIEAGVVPRLVELLQHQSPSVLIPALRSIGNIVTGDD 321

Query:   241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 300
              QTQC+I++GAL  LL LLTH+HKKSIKKEACWTISNITAGNRDQIQAV +AGL+ PLVN
Sbjct:   322 LQTQCVISHGALLSLLSLLTHNHKKSIKKEACWTISNITAGNRDQIQAVCEAGLICPLVN 381

Query:   301 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL 360
             LLQNAEFDIKKEAAWAISNATSGG+ +QIKY+V +G +KPLCDL VCPDPRI+TVCLEGL
Sbjct:   382 LLQNAEFDIKKEAAWAISNATSGGSPDQIKYMVEQGVVKPLCDLLVCPDPRIITVCLEGL 441

Query:   361 ENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 420
             ENILKVGEAEK  G  T DVN YAQL+++AEGLEKIENLQSHDN+EIYEKAVKILETYWL
Sbjct:   442 ENILKVGEAEKVTGN-TGDVNFYAQLIDDAEGLEKIENLQSHDNSEIYEKAVKILETYWL 500

Query:   421 EEDDETIAAGDGPQPGFPYAG-NEVQVPSGGFNF 453
             EE+DET+  GD    GF + G N+  VP GGFNF
Sbjct:   501 EEEDETLPPGDPSAQGFQFGGGNDAAVPPGGFNF 534

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2083313 IMPA-1 "importin alpha isoform 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1976 (700.6 bits), Expect = 3.0e-204, P = 3.0e-204
 Identities = 381/457 (83%), Positives = 414/457 (90%)

Query:     1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
             MVAGVWSDD +LQLE+TTQFRKLLSIERSPPIEEVI +GVVPRFVEFL +EDYP +QFEA
Sbjct:    77 MVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPRFVEFLKKEDYPAIQFEA 136

Query:    61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
             AWALTNIASGTS++TKVVIDH AVPIFV+LLASPSDDVREQAVWALGNVAGDSPRCRDLV
Sbjct:   137 AWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAVWALGNVAGDSPRCRDLV 196

Query:   121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 180
             L  GAL+PLL QLNE AKLSMLRNATWTLSNFCRGKPQP FDQV+PALPAL +L+HS+DE
Sbjct:   197 LGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQVKPALPALERLIHSDDE 256

Query:   181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240
             EVLTDACWALSYLSDGTNDKIQ VI+AGV P+LVELL H SPSVLIPALRTVGNIVTGDD
Sbjct:   257 EVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPSVLIPALRTVGNIVTGDD 316

Query:   241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 300
              QTQC+I  GALP L  LLT +HKKSIKKEACWTISNITAGN+DQIQ V++A L+ PLV+
Sbjct:   317 IQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNKDQIQTVVEANLISPLVS 376

Query:   301 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL 360
             LLQNAEFDIKKEAAWAISNATSGG+H+QIKYLV +GCIKPLCDL VCPDPRI+TVCLEGL
Sbjct:   377 LLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVEQGCIKPLCDLLVCPDPRIITVCLEGL 436

Query:   361 ENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 420
             ENILKVGEAEKN+G  T D+N YAQL+++AEGLEKIENLQSHDNNEIYEKAVKILETYWL
Sbjct:   437 ENILKVGEAEKNLGH-TGDMNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWL 495

Query:   421 EE-DDETIAA-G-DGPQPGFPYAGNEVQVPSGGFNFS 454
             EE DDET    G DG Q GF + GN+  VPSGGFNFS
Sbjct:   496 EEEDDETQQPPGVDGSQAGFQFGGNQAPVPSGGFNFS 532

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2195351 IMPA-4 "AT1G09270" [Arabidopsis thaliana (taxid:3702)]

 Score = 1833 (650.3 bits), Expect = 4.3e-189, P = 4.3e-189
 Identities = 354/457 (77%), Positives = 397/457 (86%)

Query:     1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
             MV GV+SDD   QLEATTQFRKLLSIERSPPI+EVI++GV+PRFVEFL R D+PQLQFEA
Sbjct:    84 MVQGVYSDDPQAQLEATTQFRKLLSIERSPPIDEVIKAGVIPRFVEFLGRHDHPQLQFEA 143

Query:    61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
             AWALTN+ASGTS++T+VVI+ GAVPIFVKLL S SDDVREQAVWALGNVAGDSP CR+LV
Sbjct:   144 AWALTNVASGTSDHTRVVIEQGAVPIFVKLLTSASDDVREQAVWALGNVAGDSPNCRNLV 203

Query:   121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 180
             L+ GAL PLLAQLNE +KLSMLRNATWTLSNFCRGKP  PF+QV+PALP L QL++ NDE
Sbjct:   204 LNYGALEPLLAQLNENSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILRQLIYLNDE 263

Query:   181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240
             EVLTDACWALSYLSDG NDKIQAVIEAGVCPRLVELLGH SP+VLIPALRTVGNIVTGDD
Sbjct:   264 EVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLGHQSPTVLIPALRTVGNIVTGDD 323

Query:   241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 300
              QTQ II  G LP+L  LLT +HKKSIKKEACWTISNITAGN+ QI+AV+ AG++ PLV+
Sbjct:   324 SQTQFIIESGVLPHLYNLLTQNHKKSIKKEACWTISNITAGNKLQIEAVVGAGIILPLVH 383

Query:   301 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL 360
             LLQNAEFDIKKEAAWAISNATSGG+HEQI+YLV +GCIKPLCDL +CPDPRIVTVCLEGL
Sbjct:   384 LLQNAEFDIKKEAAWAISNATSGGSHEQIQYLVTQGCIKPLCDLLICPDPRIVTVCLEGL 443

Query:   361 ENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 420
             ENILKVGEA+K MG   + VN YAQ++EE++GL+K+ENLQSHDNNEIYEKAVKILE YW 
Sbjct:   444 ENILKVGEADKEMGL-NSGVNLYAQIIEESDGLDKVENLQSHDNNEIYEKAVKILERYWA 502

Query:   421 EEDDETI---AAGDGPQPGFPYAGNEVQVPSGGFNFS 454
             EE++E I      D  Q  F + GN    P GGF F+
Sbjct:   503 EEEEEQILQDGGNDNSQQAFNF-GNNPAAPVGGFKFA 538

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS;RCA

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0030581 "symbiont intracellular protein transport in host" evidence=IPI

GO:0080034 "host response to induction by symbiont of tumor, nodule or growth in host" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2132238 MOS6 "MODIFIER OF SNC1, 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1732 (614.8 bits), Expect = 2.1e-178, P = 2.1e-178
 Identities = 331/454 (72%), Positives = 386/454 (85%)

Query:     1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
             MVAG+WS+DS+ QLEAT   RKLLSIE++PPI EV+QSGVVPR V+FL R+D+P+LQFEA
Sbjct:    80 MVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVVPRVVKFLSRDDFPKLQFEA 139

Query:    61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
             AWALTNIASGTSENT V+I+ GAVPIF++LL+S S+DVREQAVWALGNVAGDSP+CRDLV
Sbjct:   140 AWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQAVWALGNVAGDSPKCRDLV 199

Query:   121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 180
             LS GA+ PLL+Q NE  KLSMLRNATWTLSNFCRGKP P F+Q +PALP L +LV S DE
Sbjct:   200 LSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAFEQTQPALPVLERLVQSMDE 259

Query:   181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240
             EVLTDACWALSYLSD +NDKIQAVIEAGV PRL++LLGH SPSVLIPALRT+GNIVTGDD
Sbjct:   260 EVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSSPSVLIPALRTIGNIVTGDD 319

Query:   241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 300
              QTQ ++   ALP LL LL +++KKSIKKEACWTISNITAGN DQIQAVIDAG++  LV 
Sbjct:   320 LQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAGNADQIQAVIDAGIIQSLVW 379

Query:   301 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL 360
             +LQ+AEF++KKEAAW ISNATSGGTH+QIK++V +GCIKPLCDL  CPD ++VTVCLE L
Sbjct:   380 VLQSAEFEVKKEAAWGISNATSGGTHDQIKFMVSQGCIKPLCDLLTCPDLKVVTVCLEAL 439

Query:   361 ENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 420
             ENIL VGEAEKN+G  T + N YAQ+++EAEGLEKIENLQSHDNN+IY+KAVKILET+W 
Sbjct:   440 ENILVVGEAEKNLGH-TGEDNLYAQMIDEAEGLEKIENLQSHDNNDIYDKAVKILETFWT 498

Query:   421 EEDDET-IAAGDGPQPGFPYAGNEVQVPSGGFNF 453
             E+++E        PQ GF +    V  P G FNF
Sbjct:   499 EDNEEEGNDENHAPQSGFQFGSTNV--PPGQFNF 530

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0006952 "defense response" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2196140 IMPA-6 "importin alpha isoform 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1707 (606.0 bits), Expect = 9.6e-176, P = 9.6e-176
 Identities = 329/459 (71%), Positives = 384/459 (83%)

Query:     1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
             M+AGV S+D  LQLEAT  FR+LLSIER+PPI EV+QSGVVP  V+FL R+D+ QLQFEA
Sbjct:    81 MIAGVMSEDRDLQLEATASFRRLLSIERNPPINEVVQSGVVPHIVQFLSRDDFTQLQFEA 140

Query:    61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
             AWALTNIASGTSENT+V+ID GAVP+FVKLL+S S++VREQAVWALGNVAGDSP+CRD V
Sbjct:   141 AWALTNIASGTSENTRVIIDSGAVPLFVKLLSSASEEVREQAVWALGNVAGDSPKCRDHV 200

Query:   121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ-VRPALPALAQLVHSND 179
             LS  A++ LLAQ +E +KLSMLRNATWTLSNFCRGKPQP F+Q  + ALPAL +L+HS D
Sbjct:   201 LSCEAMMSLLAQFHEHSKLSMLRNATWTLSNFCRGKPQPAFEQQTKAALPALERLLHSTD 260

Query:   180 EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD 239
             EEVLTDA WALSYLSDGTN+KIQ VI+AGV PRLV+LL HPSPSVLIPALRT+GNIVTGD
Sbjct:   261 EEVLTDASWALSYLSDGTNEKIQTVIDAGVIPRLVQLLAHPSPSVLIPALRTIGNIVTGD 320

Query:   240 DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLV 299
             D QTQ +I+  ALP LL LL +++KKSIKKEACWTISNITAGN  QIQ V  AG++ PL+
Sbjct:   321 DIQTQAVISSQALPGLLNLLKNTYKKSIKKEACWTISNITAGNTSQIQEVFQAGIIRPLI 380

Query:   300 NLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEG 359
             NLL+  EF+IKKEA WAISNATSGG H+QIK+LV +GCI+PLCDL  CPDPR+VTV LEG
Sbjct:   381 NLLEIGEFEIKKEAVWAISNATSGGNHDQIKFLVSQGCIRPLCDLLPCPDPRVVTVTLEG 440

Query:   360 LENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW 419
             LENILKVGEAEKN+G  T + N YAQ++E+A+GL+KIENLQSHDNNEIYEKAVKILE+YW
Sbjct:   441 LENILKVGEAEKNLGN-TGNDNLYAQMIEDADGLDKIENLQSHDNNEIYEKAVKILESYW 499

Query:   420 LEEDDETIAAG-DGPQ----PGFPYAGNEVQVPSGGFNF 453
               +D+E    G D P+     GF +       P+GGFNF
Sbjct:   500 AADDEEEDIGGVDAPENVQSSGFQFGNQSGNAPTGGFNF 538

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2155929 IMPA-5 "importin alpha isoform 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1504 (534.5 bits), Expect = 3.1e-154, P = 3.1e-154
 Identities = 298/445 (66%), Positives = 350/445 (78%)

Query:     1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
             M+ GV+SDD SLQLE TT+FR +LS +RSPP + VI+SGVVPRFVEFL ++D P+LQFEA
Sbjct:    75 MITGVFSDDPSLQLEYTTRFRVVLSFDRSPPTDNVIKSGVVPRFVEFLKKDDNPKLQFEA 134

Query:    61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
             AWALTNIASG SE+TKVVIDHG VP+FV+LLASP DDVREQA+W LGNVAGDS +CRD V
Sbjct:   135 AWALTNIASGASEHTKVVIDHGVVPLFVQLLASPDDDVREQAIWGLGNVAGDSIQCRDFV 194

Query:   121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 180
             L+ GA IPLL QLN  A LS+LRNATWTLSNF RGKP PPFD V+  LP L +LV+S+DE
Sbjct:   195 LNSGAFIPLLHQLNNHATLSILRNATWTLSNFFRGKPSPPFDLVKHVLPVLKRLVYSDDE 254

Query:   181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240
             +VL DACWALS LSD +N+ IQ+VIEAGV PRLVELL H SP VL+PALR +GNIV+G+ 
Sbjct:   255 QVLIDACWALSNLSDASNENIQSVIEAGVVPRLVELLQHASPVVLVPALRCIGNIVSGNS 314

Query:   241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 300
              QT C+I  G LP L  LLT +H + I++EACWTISNITAG  +QIQ+VIDA L+  LVN
Sbjct:   315 QQTHCVINCGVLPVLADLLTQNHMRGIRREACWTISNITAGLEEQIQSVIDANLIPSLVN 374

Query:   301 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL 360
             L Q+AEFDIKKEA WAISNA+ GG+  QIKYLV + CIK LCD+ VCPD RI+ V L GL
Sbjct:   375 LAQHAEFDIKKEAIWAISNASVGGSPNQIKYLVEQNCIKALCDILVCPDLRIILVSLGGL 434

Query:   361 ENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 420
             E IL  GE +KN+     DVN Y+Q++E+AEGLEKIENLQ H NNEIYEKAVKIL+TY L
Sbjct:   435 EMILIAGEVDKNL----RDVNCYSQMIEDAEGLEKIENLQHHGNNEIYEKAVKILQTYGL 490

Query:   421 EEDD-----ETIAAGDG-PQPGFPY 439
              E+D     E    GDG   P F +
Sbjct:   491 VEEDGRLVEEEDEGGDGCSHPEFQF 515

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0009407 "toxin catabolic process" evidence=RCA

ASPGD|ASPL0000045550 kapA [Emericella nidulans (taxid:162425)]

 Score = 1441 (512.3 bits), Expect = 1.5e-147, P = 1.5e-147
 Identities = 296/463 (63%), Positives = 356/463 (76%)

Query:     1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
             MV GV+SD    Q++ATT+FRKLLS ER+PPIE VI++GVV RFVEFL R  +  +QFEA
Sbjct:    87 MVKGVFSDQIEAQIQATTKFRKLLSKERNPPIERVIETGVVSRFVEFL-RSPHTLVQFEA 145

Query:    61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
             AWALTNIASG+++ T+VVI+ GAVPIFV+LL+SP  DVREQAVWALGN+AGDSP+CRD V
Sbjct:   146 AWALTNIASGSAQQTQVVIEAGAVPIFVELLSSPEPDVREQAVWALGNIAGDSPQCRDFV 205

Query:   121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSND 179
             L+ GAL PLL  +N+  K+SMLRNATWTLSNFCRGK PQP ++ + PALP LA+L++  D
Sbjct:   206 LNAGALRPLLTLINDGRKISMLRNATWTLSNFCRGKTPQPDWNTIAPALPVLAKLIYMLD 265

Query:   180 EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD 239
             +EVL DACWA+SYLSDG N+KIQAVIEAG+  RLVELL H S SV  PALR+VGNIVTGD
Sbjct:   266 DEVLIDACWAISYLSDGPNEKIQAVIEAGIPRRLVELLMHASTSVQTPALRSVGNIVTGD 325

Query:   240 DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLV 299
             D QTQ II  GALP LL LL+ S K  I+KEACWTISNITAGN  QIQ+VIDAG++ PLV
Sbjct:   326 DVQTQVIINCGALPALLSLLS-STKDGIRKEACWTISNITAGNSSQIQSVIDAGIIPPLV 384

Query:   300 NLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRIVTVCL 357
             +LL N +F  +KEA WAISNATSGG    +QI+YLV +GCIKPLCDL  CPD +I+ V L
Sbjct:   385 HLLANGDFKTRKEACWAISNATSGGLQKPDQIRYLVTQGCIKPLCDLLACPDNKIIQVAL 444

Query:   358 EGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILET 417
             +GLENILKVGE +K  G   A VN+YA  +EEA G+EKI + Q++ N EIY KA  I+E 
Sbjct:   445 DGLENILKVGEMDKEAGQGDAHVNRYALFIEEAGGMEKIHDCQNNANEEIYMKAYNIIEK 504

Query:   418 YWLEEDDETIAAGD----GPQP---GFPYAGNEVQVPSGGFNF 453
             Y+ +ED+   AAGD     PQ    GF     + Q P GGF+F
Sbjct:   505 YFSDEDE---AAGDIDELAPQQTQTGFTLGATQQQ-P-GGFSF 542

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

TAIR|locus:2078122 IMPA-7 "importin alpha isoform 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1432 (509.1 bits), Expect = 1.3e-146, P = 1.3e-146
 Identities = 286/432 (66%), Positives = 339/432 (78%)

Query:     1 MVAGVWSDDSSLQLEATTQFRKLLSIER-SPPIEEVIQSGVVPRFVEFLMREDYPQLQFE 59
             +++ +WSD+  L +EATTQ R LL  E  +  +EEVIQ+G+VPRFVEFL  +D PQLQFE
Sbjct:    64 LISCIWSDERDLLIEATTQIRTLLCGEMFNVRVEEVIQAGLVPRFVEFLTWDDSPQLQFE 123

Query:    60 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 119
             AAWALTNIASGTSENT+VVIDHGAV I V+LL SP D VREQ VWALGN++GDSPRCRD+
Sbjct:   124 AAWALTNIASGTSENTEVVIDHGAVAILVRLLNSPYDVVREQVVWALGNISGDSPRCRDI 183

Query:   120 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSND 179
             VL   AL  LL QLN  AKLSML NA WTLSN CRGKPQPPFDQV  ALPALAQL+  +D
Sbjct:   184 VLGHAALPSLLLQLNHGAKLSMLVNAAWTLSNLCRGKPQPPFDQVSAALPALAQLIRLDD 243

Query:   180 EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD 239
             +E+L   CWAL YLSDG+N+KIQAVIEA VC RL+ L  H SPSV+ PALRT+GNIVTG+
Sbjct:   244 KELLAYTCWALVYLSDGSNEKIQAVIEANVCARLIGLSIHRSPSVITPALRTIGNIVTGN 303

Query:   240 DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLV 299
             D QTQ II   ALP L+ LL  S+ K+I+KEACWT+SNITAG + QIQAV DA +   LV
Sbjct:   304 DSQTQHIIDLQALPCLVNLLRGSYNKTIRKEACWTVSNITAGCQSQIQAVFDADICPALV 363

Query:   300 NLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEG 359
             NLLQN+E D+KKEAAWAI NA +GG+++QI +LV++ CIKPLCDL  C D ++V VCLE 
Sbjct:   364 NLLQNSEGDVKKEAAWAICNAIAGGSYKQIMFLVKQECIKPLCDLLTCSDTQLVMVCLEA 423

Query:   360 LENILKVGE------AEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVK 413
             L+ ILKVGE      AE        +VN +AQL+EEAEGLEKIE LQSH+NN+IYE AVK
Sbjct:   424 LKKILKVGEVFSSRHAEGIYQCPQTNVNPHAQLIEEAEGLEKIEGLQSHENNDIYETAVK 483

Query:   414 ILETYWLEEDDE 425
             ILETYW+EE++E
Sbjct:   484 ILETYWMEEEEE 495

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

UNIPROTKB|G4MZS0 MGG_15072 "Importin subunit alpha" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 1401 (498.2 bits), Expect = 2.6e-143, P = 2.6e-143
 Identities = 288/456 (63%), Positives = 346/456 (75%)

Query:     1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
             MV GV+S+    Q++ATT+FRKLLS ER+PPIEEVI++GVV RFVEFL R  +  +QFEA
Sbjct:    86 MVQGVFSESIDAQIQATTKFRKLLSKERNPPIEEVIKTGVVSRFVEFL-RSPHTLVQFEA 144

Query:    61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
             AWALTNIASG++  T+VVI+ GAVPIFV+LL SP  DVREQAVWALGN+AGDSP+CRD V
Sbjct:   145 AWALTNIASGSATQTQVVIEAGAVPIFVELLGSPEPDVREQAVWALGNIAGDSPQCRDYV 204

Query:   121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSND 179
             LS GAL PLL  L +  KLSMLRNATWTLSNFCRGK PQP +  + PALP LA+LV+S D
Sbjct:   205 LSCGALKPLLNLLGDSRKLSMLRNATWTLSNFCRGKTPQPDWTTIAPALPVLAKLVYSLD 264

Query:   180 EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD 239
             +EVL DACWA+SYLSDG+NDKIQAVIEAG+  RLVELL H S SV  PALR+VGNIVTGD
Sbjct:   265 DEVLIDACWAISYLSDGSNDKIQAVIEAGIPRRLVELLMHASTSVQTPALRSVGNIVTGD 324

Query:   240 DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLV 299
             D QTQ II  GALP LL LL  S+K  I+KEACWTISNITAGN  QIQ+V+DA ++ PL+
Sbjct:   325 DVQTQVIINCGALPCLLSLLG-SNKDGIRKEACWTISNITAGNSAQIQSVVDANIIPPLI 383

Query:   300 NLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRIVTVCL 357
             +LL N +   +KEA WAISNATSGG    +QI+YLV +GCIKPLCDL  CPD +I+ V L
Sbjct:   384 HLLSNGDLKTRKEACWAISNATSGGLQKPDQIRYLVAQGCIKPLCDLLSCPDNKIIQVAL 443

Query:   358 EGLENILKVGEAEKNM-GTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILE 416
             +GLENILKVG+ +K   G     +N+YA  +EE  G+EKI   Q++ N EIY KA  I+E
Sbjct:   444 DGLENILKVGDLDKQAAGEGQDSINRYALFIEECGGMEKIHECQTNANEEIYMKAFNIIE 503

Query:   417 TYWLEEDD--ETIAAGDGPQPGFPYAGNEVQVPSGG 450
              Y+ ++D+  +  A   GP   F + GN    PSGG
Sbjct:   504 KYFSDDDENADDAAPAQGPNGTFGF-GN----PSGG 534

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0272318 DDB_G0272318 "putative importin subunit alpha B" [Dictyostelium discoideum (taxid:44689)]

 Score = 1371 (487.7 bits), Expect = 3.9e-140, P = 3.9e-140
 Identities = 270/427 (63%), Positives = 341/427 (79%)

Query:     1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
             +VA + S++  L L++TT FRKLLSIE+SPPIEEVI++G+VPR V+FL  +D+PQLQFEA
Sbjct:    72 LVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLYMQDFPQLQFEA 131

Query:    61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
             AWALTNIASGT E T+VVI++GA+ +FV LL+SP DDVREQAVWALGN+AGDS  CRDLV
Sbjct:   132 AWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNIAGDSHYCRDLV 191

Query:   121 LSQGALIPLLAQLNERA--KLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN 178
             LS  AL PLL+ L   A  K+SM+RNATWTLSNFCRGKPQPPF+ VR +LP LA+L++  
Sbjct:   192 LSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRASLPVLAKLIYYQ 251

Query:   179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
             DEEVL DACWALSYLSDG+N++IQ VI+A VC ++VELLGHP+ +V  PALRT+GNIVTG
Sbjct:   252 DEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQTPALRTIGNIVTG 311

Query:   239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
             DD QTQ +++  AL +LL LL  S K++I+KEACWTISNITAG+++QIQ VIDA ++  L
Sbjct:   312 DDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQIQQVIDANIIPSL 370

Query:   299 VNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE 358
             V LL NAEF+I+KEAAWAISNATS GT +QI +LV +GC+KPLCDL    DPRI+ V LE
Sbjct:   371 VYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKVSDPRIINVALE 430

Query:   359 GLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETY 418
             G+ENIL  G+ E  +      VN Y +++E+A+GL KI +LQ H N + +EK  +I+ TY
Sbjct:   431 GIENILVAGKKEAQV----TGVNPYKKIIEDADGLGKIYDLQHHMNKDTFEKVSRIISTY 486

Query:   419 WLEEDDE 425
              LE++ E
Sbjct:   487 -LEDEQE 492

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O35345	IMA7_MOUSE	No assigned EC number	0.6074	0.9889	0.8376	yes	no
Q19969	IMA3_CAEEL	No assigned EC number	0.4750	0.9537	0.8424	yes	no
Q5RBV0	IMA7_PONAB	No assigned EC number	0.6052	0.9889	0.8376	yes	no
O04294	IMA2_ARATH	No assigned EC number	0.7268	0.9911	0.8474	no	no
Q02821	IMA1_YEAST	No assigned EC number	0.5726	0.9779	0.8191	yes	no
Q96321	IMA1_ARATH	No assigned EC number	0.8315	0.9977	0.8515	yes	no
O94374	IMA2_SCHPO	No assigned EC number	0.5645	0.9845	0.8293	yes	no
Q76P29	IMAB_DICDI	No assigned EC number	0.6134	0.9625	0.8468	yes	no
O22478	IMA_SOLLC	No assigned EC number	0.7995	0.9911	0.8538	N/A	no
O60684	IMA7_HUMAN	No assigned EC number	0.6052	0.9889	0.8376	yes	no
Q0V7M0	IMA7_BOVIN	No assigned EC number	0.6052	0.9889	0.8376	yes	no
Q71VM4	IMA1A_ORYSJ	No assigned EC number	0.8531	0.9405	0.8117	no	no
Q9SLX0	IMA1B_ORYSJ	No assigned EC number	0.8101	0.9933	0.8445	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00033097001 SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (529 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	454
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	0.0
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-35
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-31
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	7e-24
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	8e-24
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-22
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	6e-21
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	1e-10
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-10
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	4e-10
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	2e-08
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	5e-08
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	5e-08
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	7e-08
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	9e-08
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	2e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-06
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-06
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	9e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	2e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	2e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	5e-05
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-04
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-04
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	2e-04
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	4e-04
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	0.001
pfam02985	31	pfam02985, HEAT, HEAT repeat	0.001
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	0.004

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score =  560 bits (1444), Expect = 0.0
 Identities = 256/453 (56%), Positives = 315/453 (69%), Gaps = 17/453 (3%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           +   ++SDD   QL+A  +FRKLLS E SPPI+ VI +GVVPRFVEF+       LQFEA
Sbjct: 76  LTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEA 135

Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGT++ TKVV+D GAVP+F++LL+S  DDVREQAVWALGN+AGDS  CRD V
Sbjct: 136 AWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYV 195

Query: 121 LSQGALIPLLAQLNERA-KLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSN 178
           L  GAL PLL  L   A  +SMLRNATWTLSN CRGK P P +  +  ALP LA+L++S 
Sbjct: 196 LQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSR 255

Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
           D EVL DACWA+SYLSDG N+KIQAV++ G+  RLVELL H S  +  PALR+VGNIVTG
Sbjct: 256 DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTG 315

Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
            D QTQ II  GAL     LL+   K++I+KEACWTISNITAGN +QIQAVIDA L+ PL
Sbjct: 316 SDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPL 374

Query: 299 VNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRIVTVC 356
           ++LL +AE+ IKKEA WAISNATSGG +  + I+YLV +G IKPLCDL    D +I+ V 
Sbjct: 375 IHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVA 434

Query: 357 LEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILE 416
           L+ +ENILKVGE ++       ++N YA  VE+A G++ I  LQ   N  IY+KA  I+E
Sbjct: 435 LDAIENILKVGEQDRLR--YGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIE 492

Query: 417 TYWLEED----------DETIAAGDGPQPGFPY 439
            ++ EED            T   G        +
Sbjct: 493 KFFGEEDAVDELAPETAGNTFTFGSNVNQQGNF 525

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  126 bits (318), Expect = 3e-35
 Identities = 45/122 (36%), Positives = 71/122 (58%), Gaps = 2/122 (1%)

Query: 33  EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA 92
           E VIQ+G +P  V  L   D   +Q EAAWAL+N+++G ++N + V++ G +P  V+LL 
Sbjct: 1   EAVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK 59

Query: 93  SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 152
           S  ++V + A+WAL N+A      + +VL  G  +P L  L + +   + +NAT  LSN 
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGG-VPKLVNLLDSSNEDIQKNATGALSNL 118

Query: 153 CR 154
             
Sbjct: 119 AS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  116 bits (292), Expect = 2e-31
 Identities = 47/114 (41%), Positives = 65/114 (57%), Gaps = 1/114 (0%)

Query: 167 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 226
            LPAL  L+ S+DE V  +A WALS LS G ND IQAV+EAG  P LV+LL      V+ 
Sbjct: 8   GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVK 67

Query: 227 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 280
            AL  + N+  G +     ++  G +P L+ LL  S  + I+K A   +SN+ +
Sbjct: 68  AALWALRNLAAGPEDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 95.8 bits (239), Expect = 7e-24
 Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 14/133 (10%)

Query: 287 QAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV 346
           +AVI AG +  LV+LL +++ ++++EAAWA+SN ++G  ++ I+ +V  G +  L  L  
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAG-NNDNIQAVVEAGGLPALVQLLK 59

Query: 347 CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNE 406
             D  +V   L  L N+              A       +V EA G+ K+ NL    N +
Sbjct: 60  SEDEEVVKAALWALRNL-------------AAGPEDNKLIVLEAGGVPKLVNLLDSSNED 106

Query: 407 IYEKAVKILETYW 419
           I + A   L    
Sbjct: 107 IQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 95.5 bits (238), Expect = 8e-24
 Identities = 39/118 (33%), Positives = 67/118 (56%), Gaps = 2/118 (1%)

Query: 246 IITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA 305
           +I  G LP L+ LL+ S + ++++EA W +SN++AGN D IQAV++AG +  LV LL++ 
Sbjct: 3   VIQAGGLPALVSLLSSSDE-NVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 306 EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENI 363
           + ++ K A WA+ N  +G   +    ++  G +  L +L    +  I       L N+
Sbjct: 62  DEEVVKAALWALRNLAAGPE-DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 91.6 bits (228), Expect = 2e-22
 Identities = 37/104 (35%), Positives = 60/104 (57%), Gaps = 2/104 (1%)

Query: 7   SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTN 66
           S D ++Q EA      L S   +  I+ V+++G +P  V+ L  ED  ++   A WAL N
Sbjct: 18  SSDENVQREAAWALSNL-SAGNNDNIQAVVEAGGLPALVQLLKSED-EEVVKAALWALRN 75

Query: 67  IASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA 110
           +A+G  +N  +V++ G VP  V LL S ++D+++ A  AL N+A
Sbjct: 76  LAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 87.8 bits (218), Expect = 6e-21
 Identities = 44/122 (36%), Positives = 59/122 (48%), Gaps = 4/122 (3%)

Query: 118 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPA--LPALAQLV 175
           + V+  G L P L  L   +  ++ R A W LSN   G        V  A  LPAL QL+
Sbjct: 1   EAVIQAGGL-PALVSLLSSSDENVQREAAWALSNLSAGNNDNI-QAVVEAGGLPALVQLL 58

Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
            S DEEV+  A WAL  L+ G  D    V+EAG  P+LV LL   +  +   A   + N+
Sbjct: 59  KSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118

Query: 236 VT 237
            +
Sbjct: 119 AS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 55.9 bits (136), Expect = 1e-10
 Identities = 16/40 (40%), Positives = 26/40 (65%)

Query: 71  TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA 110
             EN + V+D G +P  V+LL S  ++V ++A WAL N++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 55.2 bits (134), Expect = 2e-10
 Identities = 21/40 (52%), Positives = 31/40 (77%)

Query: 71  TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA 110
           + EN + VI+ GAVP  V+LL+SP ++V+E+A WAL N+A
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 54.4 bits (132), Expect = 4e-10
 Identities = 19/41 (46%), Positives = 30/41 (73%)

Query: 282 NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 322
           + +  QAVI+AG V PLV LL + + ++++EAAWA+SN  +
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 54  PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV 109
            +++  AA AL  +A G  E  +  +    +P  + LL    D+VRE A WALG +
Sbjct: 1   WEVREAAALALGALAGGGPELLRPAVPE-LLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 48.6 bits (117), Expect = 5e-08
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 28 RSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 69
               + V+ +G +P  VE L  ED  ++  EAAWAL+N++S
Sbjct: 1  DDENKQAVVDAGGLPALVELLKSED-EEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 48.6 bits (117), Expect = 5e-08
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 197 TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT 237
           + +  QAVIEAG  P LV+LL  P   V   A   + N+  
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 48.2 bits (116), Expect = 7e-08
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 29 SPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 69
              + VI++G VP  V+ L   D  ++Q EAAWAL+N+A+
Sbjct: 2  PENKQAVIEAGAVPPLVQLLSSPD-EEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 47.8 bits (115), Expect = 9e-08
 Identities = 19/41 (46%), Positives = 30/41 (73%)

Query: 282 NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 322
           + +  QAV+DAG +  LV LL++ + ++ KEAAWA+SN +S
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 46.7 bits (112), Expect = 2e-07
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 197 TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 236
            ++  QAV++AG  P LVELL      V+  A   + N+ 
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 16/29 (55%), Positives = 20/29 (68%)

Query: 167 ALPALAQLVHSNDEEVLTDACWALSYLSD 195
           A+P L QL+ S DEEV  +A WALS L+ 
Sbjct: 13  AVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 44.0 bits (105), Expect = 2e-06
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 242 QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 280
             Q +I  GA+P L+ LL+   +  +++EA W +SN+ A
Sbjct: 4   NKQAVIEAGAVPPLVQLLSSPDE-EVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 43.5 bits (103), Expect = 9e-06
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 11/73 (15%)

Query: 41  VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 100
           +   +E L+ +  P+++  AA AL  +            D  A+P  ++LL  P  +VR 
Sbjct: 1   LEALLEALLSDPDPEVRAAAARALGELG-----------DPEALPALLELLKDPDPEVRR 49

Query: 101 QAVWALGNVAGDS 113
            A  ALG +    
Sbjct: 50  AAAEALGKLGDPE 62

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 41.3 bits (98), Expect = 2e-05
 Identities = 9/39 (23%), Positives = 15/39 (38%)

Query: 325 THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENI 363
             E  + +V  G +  L +L    D  +V      L N+
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 41.3 bits (98), Expect = 2e-05
 Identities = 17/29 (58%), Positives = 21/29 (72%)

Query: 167 ALPALAQLVHSNDEEVLTDACWALSYLSD 195
            LPAL +L+ S DEEV+ +A WALS LS 
Sbjct: 13  GLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 40.1 bits (95), Expect = 5e-05
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 280
           DD   Q ++  G LP L+ LL    ++ + KEA W +SN+++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEE-VVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 9/39 (23%), Positives = 16/39 (41%)

Query: 325 THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENI 363
           + E  + ++  G + PL  L   PD  +       L N+
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 113 SPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 154
           SP  +  V+  GA+ PL+  L+      +   A W LSN   
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSP-DEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 98  VREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 152
           VRE A  ALG +AG  P      + +  L+P L  L +     +   A W L   
Sbjct: 3   VREAAALALGALAGGGPELLRPAVPE--LLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 51/212 (24%), Positives = 69/212 (32%), Gaps = 38/212 (17%)

Query: 44  FVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAV 103
            +  L+ ++   ++  AA AL  + S             AVP+  +LL+     VR+ A 
Sbjct: 47  ELLKLLEDEDLLVRLSAAVALGELGSEE-----------AVPLLRELLSDEDPRVRDAAA 95

Query: 104 WALGNVAGDSPRCRDLV----------LSQGALIPLLAQLNERAKLSMLRNATWTLSNFC 153
            ALG + GD      LV          +   A   L    +ERA   +L       S   
Sbjct: 96  DALGEL-GDPEAVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDEDSGSA 154

Query: 154 RGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWAL-SYLSDGTNDKIQAVIEA----- 207
                     VR A  A   L    D E    A   L   L D   D  +A   A     
Sbjct: 155 AAALDAALLDVRAA--AAEALGELGDPE----AIPLLIELLEDEDADVRRAAASALGQLG 208

Query: 208 ----GVCPRLVELLGHPSPSVLIPALRTVGNI 235
                    LV+ L   S  V   AL  +G I
Sbjct: 209 SENVEAADLLVKALSDESLEVRKAALLALGEI 240

Length = 335

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 30/108 (27%), Positives = 38/108 (35%), Gaps = 22/108 (20%)

Query: 169 PALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPA 228
             L  L+   D EV   A  AL  L D               P L+ELL  P P V   A
Sbjct: 3   ALLEALLSDPDPEVRAAAARALGELGD-----------PEALPALLELLKDPDPEVRRAA 51

Query: 229 LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS 276
              +G +  GD           ALP LL LL       ++  A   ++
Sbjct: 52  AEALGKL--GDP---------EALPALLELLQDDDDAVVRAAAASALA 88

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|202500 pfam02985, HEAT, HEAT repeat

 Score = 35.6 bits (83), Expect = 0.001
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 84  VPIFVKLLASPSDDVREQAVWALGNVA 110
           +P+ ++LL  P  +VRE A  ALG +A
Sbjct: 2   LPLLLELLNDPDPEVREAAAEALGALA 28

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). Length = 31

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 13/77 (16%)

Query: 32  IEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL 91
           + E+     +P  +E L+++  P+++  AA AL  +            D  A+P  ++LL
Sbjct: 24  LGELGDPEALPALLE-LLKDPDPEVRRAAAEALGKLG-----------DPEALPALLELL 71

Query: 92  ASPSDD-VREQAVWALG 107
               D  VR  A  AL 
Sbjct: 72  QDDDDAVVRAAAASALA 88

This family includes multiple HEAT repeats. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	454
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.98
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.98
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.95
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.94
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.87
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.85
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.8
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.8
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.8
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.77
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.76
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.76
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.76
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.73
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.72
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.72
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.72
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.7
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.7
PRK09687	280	putative lyase; Provisional	99.69
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.66
PRK09687	280	putative lyase; Provisional	99.65
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.65
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.64
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.61
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.6
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.59
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.58
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.51
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.48
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.48
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.47
PTZ00429	746	beta-adaptin; Provisional	99.47
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.47
PTZ00429	746	beta-adaptin; Provisional	99.46
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.43
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.42
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.42
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.39
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.28
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.27
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	99.25
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.2
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.18
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.16
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.14
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.13
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.07
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	99.06
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.03
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	99.03
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	99.03
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	99.02
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.01
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	99.0
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.98
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.95
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.95
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.94
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.94
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.91
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.91
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.9
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.88
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.88
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.86
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.84
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.84
COG5369	743	Uncharacterized conserved protein [Function unknow	98.79
COG5369	743	Uncharacterized conserved protein [Function unknow	98.79
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.79
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.78
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.77
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.76
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.75
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.72
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.71
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.71
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.66
TIGR02270	410	conserved hypothetical protein. Members are found	98.65
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.63
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.6
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	98.59
PF05536	543	Neurochondrin: Neurochondrin	98.57
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.53
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.53
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.48
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.46
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.46
TIGR02270	410	conserved hypothetical protein. Members are found	98.45
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.42
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.41
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.41
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.39
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.38
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.38
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.37
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.33
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.32
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.3
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	98.29
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.26
PF05536	543	Neurochondrin: Neurochondrin	98.25
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.25
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.24
COG5096	757	Vesicle coat complex, various subunits [Intracellu	98.22
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.22
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.19
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.19
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.17
KOG2062	929	consensus 26S proteasome regulatory complex, subun	98.16
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.13
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.1
COG5096	757	Vesicle coat complex, various subunits [Intracellu	98.08
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.08
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	98.08
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	98.04
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	98.04
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.02
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.01
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.99
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.97
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.96
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.93
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.92
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.9
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.86
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.85
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.83
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.82
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.77
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.75
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	97.74
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.74
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.72
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.7
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.68
KOG0567	289	consensus HEAT repeat-containing protein [General	97.67
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.64
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.61
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.54
KOG0414	1251	consensus Chromosome condensation complex Condensi	97.53
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.51
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.51
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.48
KOG2025	892	consensus Chromosome condensation complex Condensi	97.45
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.44
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.39
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.39
KOG0567	289	consensus HEAT repeat-containing protein [General	97.37
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.33
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	97.3
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.29
KOG3036	293	consensus Protein involved in cell differentiation	97.24
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.18
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.18
KOG2032	533	consensus Uncharacterized conserved protein [Funct	97.15
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.15
KOG2032	533	consensus Uncharacterized conserved protein [Funct	97.14
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	97.14
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.13
PF05004	309	IFRD: Interferon-related developmental regulator (	97.12
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.11
COG5116	926	RPN2 26S proteasome regulatory complex component [	97.09
KOG2062	929	consensus 26S proteasome regulatory complex, subun	97.09
KOG4653	982	consensus Uncharacterized conserved protein [Funct	97.09
KOG4653	982	consensus Uncharacterized conserved protein [Funct	97.01
PF05004	309	IFRD: Interferon-related developmental regulator (	96.99
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	96.98
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	96.95
KOG2956	516	consensus CLIP-associating protein [General functi	96.9
KOG2956	516	consensus CLIP-associating protein [General functi	96.87
KOG0414	1251	consensus Chromosome condensation complex Condensi	96.78
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.76
KOG1243	690	consensus Protein kinase [General function predict	96.75
KOG3036	293	consensus Protein involved in cell differentiation	96.71
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.67
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.64
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.62
PRK14707	2710	hypothetical protein; Provisional	96.61
PRK14707	2710	hypothetical protein; Provisional	96.58
COG5098	1128	Chromosome condensation complex Condensin, subunit	96.57
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.54
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.52
COG5656	970	SXM1 Importin, protein involved in nuclear import	96.49
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.45
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.39
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	96.33
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	96.31
KOG2025	892	consensus Chromosome condensation complex Condensi	96.25
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	96.22
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	96.19
KOG1243	690	consensus Protein kinase [General function predict	96.15
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	96.1
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	96.02
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.02
KOG0413	1529	consensus Uncharacterized conserved protein relate	95.98
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.94
PF07814	361	WAPL: Wings apart-like protein regulation of heter	95.92
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	95.89
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.88
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.88
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	95.86
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	95.79
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	95.73
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.65
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.61
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	95.58
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	95.45
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	95.43
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	95.39
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	95.35
PF07814	361	WAPL: Wings apart-like protein regulation of heter	95.28
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	95.26
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	95.23
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	95.22
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	95.16
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	95.13
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	95.09
COG5656	970	SXM1 Importin, protein involved in nuclear import	94.99
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	94.96
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	94.96
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	94.93
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	94.93
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	94.83
COG5116	926	RPN2 26S proteasome regulatory complex component [	94.82
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	94.76
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	94.75
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	94.74
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	94.73
KOG2137	700	consensus Protein kinase [Signal transduction mech	94.68
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	94.67
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	94.56
KOG2933	334	consensus Uncharacterized conserved protein [Funct	94.54
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	94.48
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.46
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	94.37
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	94.37
KOG2933	334	consensus Uncharacterized conserved protein [Funct	94.36
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	94.31
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	94.28
KOG2137	700	consensus Protein kinase [Signal transduction mech	94.12
COG5098	1128	Chromosome condensation complex Condensin, subunit	94.12
KOG0413	1529	consensus Uncharacterized conserved protein relate	94.02
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	93.97
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	93.97
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	93.96
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	93.86
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	93.5
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	93.49
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	93.36
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	93.36
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	93.19
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	93.18
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	93.06
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	93.05
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	92.88
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	92.86
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	92.73
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	92.63
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	92.62
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	92.61
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	92.43
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	92.41
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	92.39
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	92.32
cd03561	133	VHS VHS domain family; The VHS domain is present i	91.83
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	91.78
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	91.54
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	91.2
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	91.14
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	91.08
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	91.07
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	91.0
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	90.94
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	90.86
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	90.46
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	89.88
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	89.84
cd03561	133	VHS VHS domain family; The VHS domain is present i	89.66
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	89.42
KOG2229	616	consensus Protein required for actin cytoskeleton	89.12
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	88.78
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	88.63
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	88.61
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	88.47
PF04388	668	Hamartin: Hamartin protein; InterPro: IPR007483 Th	88.28
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	87.99
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	87.57
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	87.41
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	87.18
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	87.09
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	86.24
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	86.0
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	85.9
cd03565	141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	85.65
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	85.15
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	84.7
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	84.64
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	84.58
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	84.42
KOG2199	462	consensus Signal transducing adaptor protein STAM/	84.38
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	84.32
cd03565	141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	84.08
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	83.97
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	83.94
PF04869	312	Uso1_p115_head: Uso1 / p115 like vesicle tethering	81.93
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	81.81
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	81.8
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	81.63
PF12054	441	DUF3535: Domain of unknown function (DUF3535); Int	81.2
PF04869	312	Uso1_p115_head: Uso1 / p115 like vesicle tethering	81.19
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	80.63
PF04388	668	Hamartin: Hamartin protein; InterPro: IPR007483 Th	80.41
KOG1410	1082	consensus Nuclear transport receptor RanBP16 (impo	80.34

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-63  Score=452.49  Aligned_cols=442  Identities=71%  Similarity=1.105  Sum_probs=412.3

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      ++.+.|++++.+..+...++++++.+..++++.++..|++|.++.+|...+++.++..|+|+|.|++.++.+..+.+++.
T Consensus        72 ~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~a  151 (514)
T KOG0166|consen   72 LAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDA  151 (514)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccC
Confidence            45678999999999999999999998889999999999999999999877669999999999999999999999999999


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC-CCCC
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPP  160 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~  160 (454)
                      |+++.++.++.+++..+++.|+|+|+|++.+++.+|+.++..|++.+|+.++.......+.+.+.|+|+|||++. |.+.
T Consensus       152 gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~  231 (514)
T KOG0166|consen  152 GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPP  231 (514)
T ss_pred             CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCc
Confidence            999999999999999999999999999999999999999999999999999966555689999999999999998 7888


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897          161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD  240 (454)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  240 (454)
                      +.....++|.|..++.+.|+++...++|++++++.+.++.++.+++.|+++.|+.+|.+.++.++..|+++++|++.+++
T Consensus       232 ~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d  311 (514)
T KOG0166|consen  232 FDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSD  311 (514)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccH
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHh
Q 012897          241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA  320 (454)
Q Consensus       241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  320 (454)
                      .+.+.+++.|.++.|..++...+...+|++|||+++|++.++.++++.+++.|++|.|+.+++..+.++|++|+||++|+
T Consensus       312 ~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~  391 (514)
T KOG0166|consen  312 EQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNL  391 (514)
T ss_pred             HHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhh
Confidence            99999999999999999999553777999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHh
Q 012897          321 TSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ  400 (454)
Q Consensus       321 ~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~  400 (454)
                      +..+++++..++.+.|+++.|..+|...|.++...++.+|.++++.++......    . +.+..++++.||+++++.|+
T Consensus       392 ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~----~-n~~~~~IEe~ggldkiE~LQ  466 (514)
T KOG0166|consen  392 TSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRG----T-NPLAIMIEEAGGLDKIENLQ  466 (514)
T ss_pred             cccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhcccc----c-cHHHHHHHHccChhHHHHhh
Confidence            999999999999999999999999999999999999999999999999875321    1 67999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHhcCcCCCccccCCCCCCCCCCCCCCCCCCCCCCccC
Q 012897          401 SHDNNEIYEKAVKILETYWLEEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNF  453 (454)
Q Consensus       401 ~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (454)
                      +|+|++++.+|.++|++||..|++++..+ ..++ +|.|...   .|+|||||
T Consensus       467 ~hen~~Iy~~A~~II~~yf~~e~~~~~~~-~~~~-~~~~~~~---~~~~~f~f  514 (514)
T KOG0166|consen  467 SHENEEIYKKAYKIIDTYFSEEDDEDDQQ-PTTS-QFTFQVQ---APDGGFNF  514 (514)
T ss_pred             ccccHHHHHHHHHHHHHhcCCCccccccc-cccc-ccccCCC---CCCCCCCC
Confidence            99999999999999999999886665444 2222 5555444   89999998

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=5.8e-60  Score=397.73  Aligned_cols=443  Identities=58%  Similarity=0.905  Sum_probs=405.6

Q ss_pred             ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 012897            3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG   82 (454)
Q Consensus         3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g   82 (454)
                      +.|.|+|-+.+..|...++++++.+..++++.+++.|++|.++++|.......++..|+|+|.|++++.....+.+++.|
T Consensus        78 ~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~  157 (526)
T COG5064          78 QQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAG  157 (526)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCC
Confidence            34789999999999999999999998999999999999999999995544368899999999999999999999999999


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchh-hhhhHHHHHHHHHHhhcCCC-CCCC
Q 012897           83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER-AKLSMLRNATWTLSNFCRGK-PQPP  160 (454)
Q Consensus        83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~-~~~~  160 (454)
                      ++|.++++|.+++.+++++++|+|+|++.+++.+|+.++..|.+++++.++..+ .+..+.+.+.|+|+|||+.. |.+.
T Consensus       158 AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~  237 (526)
T COG5064         158 AVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPD  237 (526)
T ss_pred             chHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCc
Confidence            999999999999999999999999999999999999999999999999999543 35689999999999999998 7777


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897          161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD  240 (454)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  240 (454)
                      .......+|.|.+++.+.|+++...|+|++++++....+.++.+++.|+...|+.+|.+++..++..|++.++|++.+++
T Consensus       238 w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D  317 (526)
T COG5064         238 WSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSD  317 (526)
T ss_pred             hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCc
Confidence            88889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHh
Q 012897          241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA  320 (454)
Q Consensus       241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  320 (454)
                      .+.+.+++.|.++.+..+|+++ ...+|++|||+++|+..++.++++.+++.+++|.|+.++...+..++++||||+.|.
T Consensus       318 ~QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNa  396 (526)
T COG5064         318 DQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNA  396 (526)
T ss_pred             cceehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999 779999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCC--CHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHH
Q 012897          321 TSGG--THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIEN  398 (454)
Q Consensus       321 ~~~~--~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~  398 (454)
                      .+++  -++.+.++.+.|+++.|.++|...+.++.+.++.++.++++.++.++..  ++...|.|...+++.|+++.+..
T Consensus       397 tsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~--~~~nin~ya~~vE~Aggmd~I~~  474 (526)
T COG5064         397 TSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLR--YGKNINIYAVYVEKAGGMDAIHG  474 (526)
T ss_pred             hccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHh--ccCCccHHHHHHHhcccHHHHHH
Confidence            8876  4688999999999999999999999999999999999999998876543  22277889999999999999999


Q ss_pred             HhcCCCHHHHHHHHHHHHHhcCcCCCcc--ccCCCCCCCCCCCCCCCCCCCCCCcc
Q 012897          399 LQSHDNNEIYEKAVKILETYWLEEDDET--IAAGDGPQPGFPYAGNEVQVPSGGFN  452 (454)
Q Consensus       399 l~~~~~~~v~~~a~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (454)
                      ++++.|.+++.+|-.+|+.||.+|+.-|  .|+-.+.-|+|+-+.+    |.|.||
T Consensus       475 ~Q~s~n~~iy~KAYsIIe~fFgeeD~vd~lapet~g~tftfg~~~~----~qg~f~  526 (526)
T COG5064         475 LQDSVNRTIYDKAYSIIEKFFGEEDAVDELAPETAGNTFTFGSNVN----QQGNFN  526 (526)
T ss_pred             hhhccccHHHHHHHHHHHHHcccchhhhhcCccccCCeeecCCCcc----ccCCCC
Confidence            9999999999999999999999887444  5666666445544443    666664

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.4e-43  Score=316.97  Aligned_cols=362  Identities=26%  Similarity=0.410  Sum_probs=324.0

Q ss_pred             ccccc-CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897            2 VAGVW-SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID   80 (454)
Q Consensus         2 v~~L~-s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (454)
                      |++|. .+++.+|..|+|+|++++++. ++....+++.|.+|.|++++.+++ .+++++|+|+|+|++.+++.+|+.+++
T Consensus       115 V~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~Rd~vl~  192 (514)
T KOG0166|consen  115 VEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDCRDYVLS  192 (514)
T ss_pred             HHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHHHHHHHh
Confidence            56775 566999999999999999998 788889999999999999999999 999999999999999999999999999


Q ss_pred             CCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC-CC
Q 012897           81 HGAVPIFVKLLASPSD-DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQ  158 (454)
Q Consensus        81 ~g~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~  158 (454)
                      .|+++.|+.++...+. .+.++++|+|.|+|++..+....-.-..+++.|..++ .+.|+++...++|++++|+.+. +.
T Consensus       193 ~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLsdg~ne~  271 (514)
T KOG0166|consen  193 CGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLTDGSNEK  271 (514)
T ss_pred             hcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCChHH
Confidence            9999999999998665 8899999999999976532222222234688899998 8889999999999999999887 44


Q ss_pred             CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-CCCCcchhhHHHHHhHhhc
Q 012897          159 PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLIPALRTVGNIVT  237 (454)
Q Consensus       159 ~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~  237 (454)
                      .......|++|.|+.+|.+.++.++..|+++++|++.+++.+.+.+++.++++.|..++. ++...+++.|||+++|++.
T Consensus       272 iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA  351 (514)
T KOG0166|consen  272 IQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA  351 (514)
T ss_pred             HHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc
Confidence            455667899999999999999999999999999999999999999999999999999998 5667799999999999999


Q ss_pred             cCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc-CCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHH
Q 012897          238 GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWA  316 (454)
Q Consensus       238 ~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a  316 (454)
                      ++....+.+++.++++.|+.+|++. +.++|++|+|+++|++. ++++++.++++.|+|+.++.+|...+.++...++.+
T Consensus       352 G~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~  430 (514)
T KOG0166|consen  352 GNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDG  430 (514)
T ss_pred             CCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHH
Confidence            9999999999999999999999999 89999999999999998 689999999999999999999988899999999999


Q ss_pred             HHHhcCCCC-------HHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 012897          317 ISNATSGGT-------HEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG  367 (454)
Q Consensus       317 L~~l~~~~~-------~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~  367 (454)
                      |.++...+.       ......+.+.|+++.+..+-.+.+.++...|...+.+.+..+
T Consensus       431 l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e  488 (514)
T KOG0166|consen  431 LENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEE  488 (514)
T ss_pred             HHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence            999987542       233455667899999999999999999999999999988654

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=2.7e-41  Score=285.09  Aligned_cols=360  Identities=26%  Similarity=0.361  Sum_probs=314.8

Q ss_pred             cccc-cCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897            2 VAGV-WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID   80 (454)
Q Consensus         2 v~~L-~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (454)
                      ++++ .......+.+|+|+|++++++. ......+++.|++|.++++|.+++ .+++++++|+|+|++.+++.+|+.+.+
T Consensus       120 vefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGDS~~~RD~vL~  197 (526)
T COG5064         120 VEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSEGCRDYVLQ  197 (526)
T ss_pred             HHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCCchhHHHHHHh
Confidence            4555 4556778999999999999997 677778899999999999999999 899999999999999999999999999


Q ss_pred             CCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCC-
Q 012897           81 HGAVPIFVKLLASP--SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP-  157 (454)
Q Consensus        81 ~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-  157 (454)
                      .|+++.++.++.+.  +..+.+++.|+|+|+|+...+....-.-...++.|.+++ ...|+++...|+|++++|+..+. 
T Consensus       198 ~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLi-ys~D~evlvDA~WAiSYlsDg~~E  276 (526)
T COG5064         198 CGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLI-YSRDPEVLVDACWAISYLSDGPNE  276 (526)
T ss_pred             cCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHhccCcHH
Confidence            99999999999874  358899999999999964422111111122578888888 88899999999999999998873 


Q ss_pred             CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhc
Q 012897          158 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT  237 (454)
Q Consensus       158 ~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  237 (454)
                      ........|+.+.|+.+|.+++..++..+++.++|+...++.+.+.+++.|+++.+..+|.++...+|+.|||+++|++.
T Consensus       277 ~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA  356 (526)
T COG5064         277 KIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA  356 (526)
T ss_pred             HHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccccc
Confidence            33444557888999999999999999999999999999999998999999999999999999999999999999999999


Q ss_pred             cCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcC---CHHHHHHHHhCCChHHHHHHhhhcchhhHHHHH
Q 012897          238 GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG---NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAA  314 (454)
Q Consensus       238 ~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~  314 (454)
                      ++.+..+.+++.+++|.|+.+|.+. +-.++++|||+++|...+   .|+.++++++.|+|..|+.+|...+..+.+.++
T Consensus       357 Gnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~L  435 (526)
T COG5064         357 GNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVAL  435 (526)
T ss_pred             CCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhH
Confidence            9999999999999999999999999 999999999999999973   678899999999999999999988888888889


Q ss_pred             HHHHHhcCCCCHH----------HHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 012897          315 WAISNATSGGTHE----------QIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILK  365 (454)
Q Consensus       315 ~aL~~l~~~~~~~----------~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~  365 (454)
                      .++.|+...+..+          ...++.+.|+++.+..+-++.+..+..++...+..++.
T Consensus       436 D~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFg  496 (526)
T COG5064         436 DAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFG  496 (526)
T ss_pred             HHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcc
Confidence            9999998866332          23444558999999999999999999999888888874

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=2.3e-37  Score=321.91  Aligned_cols=408  Identities=22%  Similarity=0.259  Sum_probs=327.7

Q ss_pred             CcccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897            1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID   80 (454)
Q Consensus         1 lv~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (454)
                      +++.|+++++..|..|+++|..++.+. .+....+++.|++|.|+++|.+++++.+|+.|+|+|++++.++++.+..+++
T Consensus       194 LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~  272 (2102)
T PLN03200        194 LVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIAD  272 (2102)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            356789999999999999999988775 4578889999999999999987654799999999999999999999999999


Q ss_pred             CCChHHHHHhhCCCC---------HHHHHHHHHHHHHhhCCChh-----------hHHH---------------------
Q 012897           81 HGAVPIFVKLLASPS---------DDVREQAVWALGNVAGDSPR-----------CRDL---------------------  119 (454)
Q Consensus        81 ~g~i~~L~~lL~~~~---------~~v~~~a~~~L~~l~~~~~~-----------~~~~---------------------  119 (454)
                      .|+++.|+.++.+++         ..++++++|+|+|+|.+.+.           .+..                     
T Consensus       273 aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~  352 (2102)
T PLN03200        273 AGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSA  352 (2102)
T ss_pred             CCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCch
Confidence            999999999998654         34699999999999975322           1000                     


Q ss_pred             ----HHh-cCChHHHHHHhc-----------------------------------------hhhhhhHHHHHHHHHHhhc
Q 012897          120 ----VLS-QGALIPLLAQLN-----------------------------------------ERAKLSMLRNATWTLSNFC  153 (454)
Q Consensus       120 ----~~~-~~~i~~l~~~l~-----------------------------------------~~~~~~~~~~a~~~L~~l~  153 (454)
                          .+. ..+.+.|++++.                                         ...+.+++..++|+|++++
T Consensus       353 ~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~  432 (2102)
T PLN03200        353 ESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLC  432 (2102)
T ss_pred             hhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHh
Confidence                000 011233333331                                         2234678999999999999


Q ss_pred             CCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHH
Q 012897          154 RGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV  232 (454)
Q Consensus       154 ~~~-~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L  232 (454)
                      .+. .........+++|.|+.+|.+++..++..+++++++++..++.+...+.+.|+++.|+.+|.+++..+++.|+|+|
T Consensus       433 ~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL  512 (2102)
T PLN03200        433 CGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVL  512 (2102)
T ss_pred             CCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence            875 3344455688999999999999999999999999999988888888899999999999999999999999999999


Q ss_pred             hHhhccCccchhhhhccCChHHHHHhhcCCc-------------------------------------------------
Q 012897          233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSH-------------------------------------------------  263 (454)
Q Consensus       233 ~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~-------------------------------------------------  263 (454)
                      +|++.+.+.....+.+.|+++.|+++|++..                                                 
T Consensus       513 ~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIl  592 (2102)
T PLN03200        513 WNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVL  592 (2102)
T ss_pred             HHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHH
Confidence            9999754433322324455555555554440                                                 


Q ss_pred             -----------------------------chhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHH
Q 012897          264 -----------------------------KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAA  314 (454)
Q Consensus       264 -----------------------------~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~  314 (454)
                                                   +..+++.|+|+|.+++.++++....++..|+++.++.++..++.++++.++
T Consensus       593 sl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA  672 (2102)
T PLN03200        593 SVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSA  672 (2102)
T ss_pred             hhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHH
Confidence                                         444555555555555555556566677788999999999998999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHH
Q 012897          315 WAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLE  394 (454)
Q Consensus       315 ~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~  394 (454)
                      |+|.+++......+..++.+.|+++.|++++++.+.+++..++.+|.++++.++.              ...+...|+++
T Consensus       673 ~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~--------------~~ei~~~~~I~  738 (2102)
T PLN03200        673 RALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEV--------------AAEALAEDIIL  738 (2102)
T ss_pred             HHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchH--------------HHHHHhcCcHH
Confidence            9999999887878788889999999999999999999999999999999987664              34556689999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhcCcCC
Q 012897          395 KIENLQSHDNNEIYEKAVKILETYWLEED  423 (454)
Q Consensus       395 ~l~~l~~~~~~~v~~~a~~~l~~~~~~~~  423 (454)
                      .|.+++.+.+++.++.|.+.+..+.....
T Consensus       739 ~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~  767 (2102)
T PLN03200        739 PLTRVLREGTLEGKRNAARALAQLLKHFP  767 (2102)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999988876555

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=2.9e-37  Score=321.21  Aligned_cols=411  Identities=19%  Similarity=0.198  Sum_probs=362.5

Q ss_pred             CcccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897            1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID   80 (454)
Q Consensus         1 lv~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (454)
                      ||.+|...+.++|..++++|..++.+. .+..+.+.+.|++|.|+++|.+++ +.+|..|+++|++++.++++.+..+++
T Consensus       409 LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr~aIie  486 (2102)
T PLN03200        409 LVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESKWAITA  486 (2102)
T ss_pred             hhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            466778889999999999999999876 677889999999999999999998 899999999999999988899999999


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897           81 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP  160 (454)
Q Consensus        81 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (454)
                      .|++|.|+++|.+++..+++.|+|+|+|++.+.+..+..+...|+++.|+++| .+.+.+.+..++|+|.+++.......
T Consensus       487 aGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~~d~~~  565 (2102)
T PLN03200        487 AGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRTADAAT  565 (2102)
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhccchhH
Confidence            99999999999999999999999999999988777778888889999999999 66688999999999999975421110


Q ss_pred             --------------------------------------hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHH
Q 012897          161 --------------------------------------FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQ  202 (454)
Q Consensus       161 --------------------------------------~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  202 (454)
                                                            .....++++.|+.+++++++.+++.|+|+|.+++....+...
T Consensus       566 I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~  645 (2102)
T PLN03200        566 ISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCE  645 (2102)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHH
Confidence                                                  001247899999999999999999999999999999888888


Q ss_pred             HHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc-cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcC
Q 012897          203 AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD-FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG  281 (454)
Q Consensus       203 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~  281 (454)
                      .++..|+++.++.+|++.+.+++..++++|++++.+.. .++..+++.|+++.|+++|++. +.+++..|+.+|.|++..
T Consensus       646 avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALanLl~~  724 (2102)
T PLN03200        646 SLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALANLLSD  724 (2102)
T ss_pred             HHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHHHHHcC
Confidence            89999999999999999999999999999999997443 3345678899999999999998 999999999999999986


Q ss_pred             CHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHH--HHHHHHcCCcHHHhhccCCCCHHHHHH--HH
Q 012897          282 NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQ--IKYLVREGCIKPLCDLFVCPDPRIVTV--CL  357 (454)
Q Consensus       282 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~--~~~l~~~~~i~~L~~~l~~~~~~v~~~--al  357 (454)
                      . +....+...|+++.|++++++++++.|++|+|+|.+++...+.+.  ..++...|.+..|+++|+..|.+....  ++
T Consensus       725 ~-e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al  803 (2102)
T PLN03200        725 P-EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEAL  803 (2102)
T ss_pred             c-hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHH
Confidence            4 455677788999999999999999999999999999999876554  356677899999999999998887765  99


Q ss_pred             HHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC
Q 012897          358 EGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEE  422 (454)
Q Consensus       358 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~  422 (454)
                      .+|..+.+..+....      ..+.|..+++..+++++|.+...+.+|.++++|..+|+++..+.
T Consensus       804 ~~l~~l~~~~~~~~~------~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~  862 (2102)
T PLN03200        804 EALALLARTKGGANF------SHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQ  862 (2102)
T ss_pred             HHHHHHHhhcccCCC------CCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccC
Confidence            999999987665543      45568999999999999988889999999999999999988654

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=6.3e-31  Score=224.45  Aligned_cols=395  Identities=21%  Similarity=0.233  Sum_probs=333.9

Q ss_pred             ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 012897            3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG   82 (454)
Q Consensus         3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g   82 (454)
                      ..+++.|+.+|..|..++.+++-.  .+..-.+++.+++..|+.-+..+. .++|..++.|+++++. ..+++..+...|
T Consensus        92 ~llqs~d~~Iq~aa~~alGnlAVn--~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT-~d~nk~kiA~sG  167 (550)
T KOG4224|consen   92 ALLQSCDKCIQCAAGEALGNLAVN--MENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLAT-FDSNKVKIARSG  167 (550)
T ss_pred             HHHhCcchhhhhhhhhhhccceec--cCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhc-cccchhhhhhcc
Confidence            356888999999999999999866  455555677788888877777777 6999999999999999 588899999999


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChh
Q 012897           83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD  162 (454)
Q Consensus        83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  162 (454)
                      ++..+..+-++.+..++.++..+|.++. +..+.|+.+...|+++.|+.++ +..+.+++..++.+++++.-+...++..
T Consensus       168 aL~pltrLakskdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaVd~~~Rk~L  245 (550)
T KOG4224|consen  168 ALEPLTRLAKSKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAVDRRARKIL  245 (550)
T ss_pred             chhhhHhhcccchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhhhHHHHHHH
Confidence            9999999888899999999999999996 5567899999999999999999 8889999999999999999876555555


Q ss_pred             hhhc--hHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897          163 QVRP--ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD  240 (454)
Q Consensus       163 ~~~~--~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  240 (454)
                      ...+  ++|.|+.++++++++++-.|..+|.+++.... .+..+.+.|.+|.++.+++++.-....+...|+.|++-+.-
T Consensus       246 aqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl  324 (550)
T KOG4224|consen  246 AQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL  324 (550)
T ss_pred             HhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC
Confidence            5544  99999999999999999999999999997755 45678999999999999999988888999999999987654


Q ss_pred             cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHh
Q 012897          241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA  320 (454)
Q Consensus       241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  320 (454)
                       ..-.+.+.|++..|+.+|....+.+++..|..+|.|++..+...+..+.+.|.+|.+..++.++...++.....++..+
T Consensus       325 -Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~L  403 (550)
T KOG4224|consen  325 -NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQL  403 (550)
T ss_pred             -cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHH
Confidence             3345788999999999999886777999999999999988888888999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHH-----hccHHH
Q 012897          321 TSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEE-----AEGLEK  395 (454)
Q Consensus       321 ~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-----~g~~~~  395 (454)
                      +..  ......+.+.|.++.|+.+..+.+.+++..+..+|.|+...-+.             |.+.++-     .|.-..
T Consensus       404 al~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~-------------YarviEawd~P~~gi~g~  468 (550)
T KOG4224|consen  404 ALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEH-------------YARVIEAWDHPVQGIQGR  468 (550)
T ss_pred             Hhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHH-------------HHHHHHHhcCcchhHHHH
Confidence            884  35567889999999999999999999999999999999864332             3322221     233345


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcC
Q 012897          396 IENLQSHDNNEIYEKAVKILETYWL  420 (454)
Q Consensus       396 l~~l~~~~~~~v~~~a~~~l~~~~~  420 (454)
                      |.++..++..-+...+.+.|..+++
T Consensus       469 L~Rfl~S~~~tf~hia~wTI~qLle  493 (550)
T KOG4224|consen  469 LARFLASHELTFRHIARWTIQQLLE  493 (550)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            5666666666677777777666654

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=1e-30  Score=223.11  Aligned_cols=389  Identities=19%  Similarity=0.251  Sum_probs=323.3

Q ss_pred             ccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCh
Q 012897            5 VWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAV   84 (454)
Q Consensus         5 L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i   84 (454)
                      +.++..++|..++.++.+++..  ......+...|.+.++.++-++.+ ..+|..+..+|.+++. +.++|+.++..|++
T Consensus       135 mmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-s~EnRr~LV~aG~l  210 (550)
T KOG4224|consen  135 MMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-SRENRRVLVHAGGL  210 (550)
T ss_pred             hcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-hhhhhhhhhccCCc
Confidence            4567788999999999999987  567777889999999999877777 8999999999999998 88999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC--ChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChh
Q 012897           85 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQG--ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD  162 (454)
Q Consensus        85 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  162 (454)
                      |.|+.++.+.+..++..|+.++++++-+ ...|+.+.+.+  .++.|+.++ +++++.++..|..+|.+++.+.......
T Consensus       211 pvLVsll~s~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrnlasdt~Yq~ei  288 (550)
T KOG4224|consen  211 PVLVSLLKSGDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRNLASDTEYQREI  288 (550)
T ss_pred             hhhhhhhccCChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhhhcccchhhhHH
Confidence            9999999999999999999999999754 45788888887  899999999 8889999999999999999986555556


Q ss_pred             hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC-CcchhhHHHHHhHhhccCcc
Q 012897          163 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS-PSVLIPALRTVGNIVTGDDF  241 (454)
Q Consensus       163 ~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~  241 (454)
                      ...|.+|.++++++++-.........|+.|++.+.- +...+.+.|++..|+.+|..++ ++++..|..+|.+++...+.
T Consensus       289 v~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~  367 (550)
T KOG4224|consen  289 VEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEH  367 (550)
T ss_pred             HhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC-cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhh
Confidence            668999999999999988888999999999987644 3356888999999999998865 55999999999999998888


Q ss_pred             chhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhc
Q 012897          242 QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT  321 (454)
Q Consensus       242 ~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  321 (454)
                      ....+.+.|.++.+..++.+. .-.+|.+...+++.++.. +..+..+.+.|+++.|+.+..+.+.+++.+|+.+|.|++
T Consensus       368 n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nls  445 (550)
T KOG4224|consen  368 NVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLS  445 (550)
T ss_pred             hhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhh
Confidence            888999999999999999998 888999999999988864 444668889999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHH------cCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHH
Q 012897          322 SGGTHEQIKYLVR------EGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEK  395 (454)
Q Consensus       322 ~~~~~~~~~~l~~------~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~  395 (454)
                      +  +.+....+++      .|.-..|..++.+.+.-++..+.|.+..++.....                         +
T Consensus       446 s--~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~~-------------------------~  498 (550)
T KOG4224|consen  446 S--DVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDHDL-------------------------P  498 (550)
T ss_pred             h--hhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCCc-------------------------c
Confidence            8  4455555554      24455677788888888888888888888764322                         2


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcCcCCCccccCC
Q 012897          396 IENLQSHDNNEIYEKAVKILETYWLEEDDETIAAG  430 (454)
Q Consensus       396 l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~  430 (454)
                      +..+..++ .++-+.+..+.++.-...+.++.||.
T Consensus       499 ~~~~i~~~-ddii~~~~~~~~r~~~~g~~~~~~g~  532 (550)
T KOG4224|consen  499 LTAFIQSS-DDIIELLNDIVARDANNGEYEDGEGD  532 (550)
T ss_pred             HHHHHhCc-hhHHHHHHHHHHHhccCCcccCCCCc
Confidence            33333333 34446666677766655555554443

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.95  E-value=6.8e-25  Score=212.00  Aligned_cols=381  Identities=22%  Similarity=0.192  Sum_probs=313.9

Q ss_pred             HHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHh
Q 012897           11 SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL   90 (454)
Q Consensus        11 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l   90 (454)
                      .+...|...|.+++.+  ......|...|+++.|+++|.+++ .++...++.+|.+++. ..+++..+.+.|+++.|.++
T Consensus       264 qLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kL  339 (708)
T PF05804_consen  264 QLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKL  339 (708)
T ss_pred             HHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHH
Confidence            3445677778888877  577788999999999999999998 8999999999999999 77899999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHH
Q 012897           91 LASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPA  170 (454)
Q Consensus        91 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~  170 (454)
                      +.+++.+++..++++|.|++. ++..|..+...|+++.|+.++.   ++..+..++.+|++++.+..........+++|.
T Consensus       340 l~s~~~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~---d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~  415 (708)
T PF05804_consen  340 LPSENEDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLK---DPNFREVALKILYNLSMDDEARSMFAYTDCIPQ  415 (708)
T ss_pred             hcCCCHHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhC---CCchHHHHHHHHHHhccCHhhHHHHhhcchHHH
Confidence            999999999999999999975 4568999999999999999994   345667799999999998766666667889999


Q ss_pred             HHHhhc-CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhcc
Q 012897          171 LAQLVH-SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITY  249 (454)
Q Consensus       171 l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  249 (454)
                      +++++- .+++.+...++..+.|++.+.. +.+.+.+.++++.|+........   ...++++.|++.+.+.....+.  
T Consensus       416 L~~~Ll~~~~~~v~~eliaL~iNLa~~~r-naqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~--  489 (708)
T PF05804_consen  416 LMQMLLENSEEEVQLELIALLINLALNKR-NAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELFV--  489 (708)
T ss_pred             HHHHHHhCCCccccHHHHHHHHHHhcCHH-HHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHH--
Confidence            998764 4567777778888899987754 55778888889999888755333   2345788999987754443332  


Q ss_pred             CChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc--chhhHHHHHHHHHHhcCCCCHH
Q 012897          250 GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDIKKEAAWAISNATSGGTHE  327 (454)
Q Consensus       250 ~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~  327 (454)
                      +++..|+.++..+.+.+...++.++|+|+...+.+..+.+.+.+++|.+.+.+..+  ++++..+++..++.++.  ++.
T Consensus       490 ~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~--d~~  567 (708)
T PF05804_consen  490 DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS--DPE  567 (708)
T ss_pred             HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC--CHH
Confidence            57777888888776889999999999999876544444444689999999999875  56799999999999987  667


Q ss_pred             HHHHHHHcCCcHHHhhccCC--CCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCH
Q 012897          328 QIKYLVREGCIKPLCDLFVC--PDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNN  405 (454)
Q Consensus       328 ~~~~l~~~~~i~~L~~~l~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~  405 (454)
                      ....+.+.|+++.|+++++.  .|.+++...+.++++++...+.             ...++.+.++...+..+.++.|+
T Consensus       568 ~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t-------------r~~ll~~~~~~~ylidL~~d~N~  634 (708)
T PF05804_consen  568 CAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET-------------REVLLKETEIPAYLIDLMHDKNA  634 (708)
T ss_pred             HHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH-------------HHHHHhccchHHHHHHHhcCCCH
Confidence            77888899999999999985  5678999999999999987543             35577889999999999999999


Q ss_pred             HHHHHHHHHHHHhcC
Q 012897          406 EIYEKAVKILETYWL  420 (454)
Q Consensus       406 ~v~~~a~~~l~~~~~  420 (454)
                      ++++.|..++.-..+
T Consensus       635 ~ir~~~d~~Ldii~e  649 (708)
T PF05804_consen  635 EIRKVCDNALDIIAE  649 (708)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999888887665443

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.94  E-value=2.3e-24  Score=208.33  Aligned_cols=356  Identities=19%  Similarity=0.235  Sum_probs=294.6

Q ss_pred             CcccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897            1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID   80 (454)
Q Consensus         1 lv~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (454)
                      |++.|.+++.++...++..|.+++..  .++...|.+.|+++.|.+++.+++ .+++..++++|.|++. +++.|..+++
T Consensus       295 Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf-d~~~R~~mV~  370 (708)
T PF05804_consen  295 LVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF-DPELRSQMVS  370 (708)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc-CHHHHHHHHH
Confidence            46778999999999999999999887  578999999999999999999998 8999999999999999 8899999999


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897           81 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP  160 (454)
Q Consensus        81 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (454)
                      .|++|.|+.+|.++  ..+..++.+|.+++.+. ..+..+...++++.+++++...+++.+...+++++.|++.+.....
T Consensus       371 ~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd-~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaq  447 (708)
T PF05804_consen  371 LGLIPKLVELLKDP--NFREVALKILYNLSMDD-EARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQ  447 (708)
T ss_pred             CCCcHHHHHHhCCC--chHHHHHHHHHHhccCH-hhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHH
Confidence            99999999999764  46677999999998654 5788888889999999998777778888889999999999876555


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCCcchhhHHHHHhHhhccC
Q 012897          161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGD  239 (454)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~  239 (454)
                      .....++++.|+...-+....+   .+..+.|++.+.+.... .+. +.+..|+..+.. .+++....++.+|+|+...+
T Consensus       448 lm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~~k~-~f~-~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~  522 (708)
T PF05804_consen  448 LMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGPLKE-LFV-DFIGDLAKIVSSGDSEEFVVECLGILANLTIPD  522 (708)
T ss_pred             HHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCchHHH-HHH-HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCC
Confidence            5555678888887654333322   34688999988754433 332 577777777766 46788999999999999766


Q ss_pred             ccchhhhhccCChHHHHHhhcCCc-chhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc--chhhHHHHHHH
Q 012897          240 DFQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDIKKEAAWA  316 (454)
Q Consensus       240 ~~~~~~~~~~~~l~~L~~~L~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~a  316 (454)
                      ......+.+.++++.+...|..+. .+++.-+++..++.++.. +.....+.+.|+++.|+.+++..  |.++..+.+++
T Consensus       523 ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d-~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~  601 (708)
T PF05804_consen  523 LDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD-PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYV  601 (708)
T ss_pred             cCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC-HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHH
Confidence            666666667899999999997552 457888999999988854 67777778999999999999874  78999999999


Q ss_pred             HHHhcCCCCHHHHHHHH-HcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhh
Q 012897          317 ISNATSGGTHEQIKYLV-REGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEK  371 (454)
Q Consensus       317 L~~l~~~~~~~~~~~l~-~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~  371 (454)
                      +.++..+.  +.+..+. +.+++..|++++.++++.++..|-.+|.-+...++...
T Consensus       602 f~~ll~h~--~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~  655 (708)
T PF05804_consen  602 FYQLLFHE--ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWA  655 (708)
T ss_pred             HHHHHcCh--HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence            99999963  4455554 47899999999999999999999999999998876643

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.87  E-value=7.2e-20  Score=173.16  Aligned_cols=366  Identities=21%  Similarity=0.233  Sum_probs=285.8

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh--hH
Q 012897           40 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR--CR  117 (454)
Q Consensus        40 ~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~--~~  117 (454)
                      -+|..+.+|.+.+ +.++..|+.-+-.+|.++.+.+..+.+.|+|+.|+.+|.+++.+++.+++++|.||......  .+
T Consensus       234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK  312 (717)
T KOG1048|consen  234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK  312 (717)
T ss_pred             ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence            4778889999999 99999999999999999999999999999999999999999999999999999999965544  77


Q ss_pred             HHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCC--------------ChhHH
Q 012897          118 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN--------------DEEVL  183 (454)
Q Consensus       118 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~--------------~~~v~  183 (454)
                      -.+.+.++++.+++++....|.++++.+..+|+||+++ +..........++.|..-+-.+              +..+.
T Consensus       313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence            88899999999999998778999999999999999998 3445555566666666543211              35688


Q ss_pred             HHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHhcCC------CCCcchhhHHHHHhHhhccCc----------------
Q 012897          184 TDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLGH------PSPSVLIPALRTVGNIVTGDD----------------  240 (454)
Q Consensus       184 ~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~----------------  240 (454)
                      .++..||.|++....+..+.+.+ .|++..|+..+++      .+..-.++++-++.|+++.-.                
T Consensus       392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~  471 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR  471 (717)
T ss_pred             ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence            99999999999877766676666 4788888888752      355566777777777764221                


Q ss_pred             -------------------------------------cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCC-
Q 012897          241 -------------------------------------FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN-  282 (454)
Q Consensus       241 -------------------------------------~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~-  282 (454)
                                                           ...+.++...++..-+.+|....++.+.+.++.+|.|++.+. 
T Consensus       472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~  551 (717)
T KOG1048|consen  472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW  551 (717)
T ss_pred             cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence                                                 000112222344554555554447889999999999999842 


Q ss_pred             ---HHHHHHH-HhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCC------HHH
Q 012897          283 ---RDQIQAV-IDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPD------PRI  352 (454)
Q Consensus       283 ---~~~~~~l-~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~------~~v  352 (454)
                         ...+..+ .+..+++.|++++..++..|...++.+|.|++..  ... +.++..++++.|+.+|....      .++
T Consensus       552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d--~rn-k~ligk~a~~~lv~~Lp~~~~~~~~sedt  628 (717)
T KOG1048|consen  552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD--IRN-KELIGKYAIPDLVRCLPGSGPSTSLSEDT  628 (717)
T ss_pred             cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC--chh-hhhhhcchHHHHHHhCcCCCCCcCchHHH
Confidence               2233334 4678999999999999999999999999999984  333 34456889999999997543      578


Q ss_pred             HHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhc-CCCHHHHHHHHHHHHHhcCcCC
Q 012897          353 VTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS-HDNNEIYEKAVKILETYWLEED  423 (454)
Q Consensus       353 ~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~-~~~~~v~~~a~~~l~~~~~~~~  423 (454)
                      ...++..|.+++.....             ....+.+.+++++|..|.. ..++++.+.|..++..+|+..|
T Consensus       629 v~~vc~tl~niv~~~~~-------------nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e  687 (717)
T KOG1048|consen  629 VRAVCHTLNNIVRKNVL-------------NAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE  687 (717)
T ss_pred             HHHHHHhHHHHHHHhHH-------------HHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence            88999999999965443             2445666999999998854 4567899999999999998655

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=4.8e-19  Score=167.10  Aligned_cols=385  Identities=20%  Similarity=0.281  Sum_probs=304.6

Q ss_pred             cccccCC-CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897            2 VAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID   80 (454)
Q Consensus         2 v~~L~s~-d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (454)
                      ++.|+.. |+..|++|+..|+.++...+.+....+.-.-++|.|+.+|++..+.+++..|+++|.+++..-|.....+++
T Consensus       173 L~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~  252 (1051)
T KOG0168|consen  173 LQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVD  252 (1051)
T ss_pred             HHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeec
Confidence            4567666 999999999999999887656666555556689999999999888999999999999999988999999999


Q ss_pred             CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCC
Q 012897           81 HGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP  159 (454)
Q Consensus        81 ~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  159 (454)
                      .+.||.|+.-|.. ...++.++++.+|-.|++..+   ..++..|++...+.++ +-.+..+++.|+.+..|+|..-...
T Consensus       253 ~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Cksi~sd  328 (1051)
T KOG0168|consen  253 EHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCKSIRSD  328 (1051)
T ss_pred             ccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            9999999997776 789999999999999997665   5788899999999999 7788999999999999999987777


Q ss_pred             ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc---CChHHHHHHHHhCcHHHHHHhcCCCC----CcchhhHHHHH
Q 012897          160 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLGHPS----PSVLIPALRTV  232 (454)
Q Consensus       160 ~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~~~----~~v~~~a~~~L  232 (454)
                      .+......+|.|..+|...|.+..+.++.|+..++.   +.++..+.+...+++....+++.-..    ..+....++.+
T Consensus       329 ~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrml  408 (1051)
T KOG0168|consen  329 EFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRML  408 (1051)
T ss_pred             cchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHH
Confidence            777788999999999999999999999999999974   46677888999999999999986542    23445567777


Q ss_pred             hHhhccCccchhhhhccCChHHHHHhhcCCc-------------chhHHHHHH---------------------------
Q 012897          233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSH-------------KKSIKKEAC---------------------------  272 (454)
Q Consensus       233 ~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~-------------~~~v~~~a~---------------------------  272 (454)
                      ..++.+++-....+.+.++...+..+|....             .|.-.....                           
T Consensus       409 s~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~  488 (1051)
T KOG0168|consen  409 SLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIV  488 (1051)
T ss_pred             HHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccc
Confidence            7788777766666766676666666663210             000000000                           


Q ss_pred             -------------------------HHHH-------------H---------HhcCCHHHHHHHHhCCChHHHHHHhhhc
Q 012897          273 -------------------------WTIS-------------N---------ITAGNRDQIQAVIDAGLVGPLVNLLQNA  305 (454)
Q Consensus       273 -------------------------~~L~-------------n---------l~~~~~~~~~~l~~~~~i~~L~~ll~~~  305 (454)
                                               ..+.             +         +....++..+.+. ..++|.|++.+.+.
T Consensus       489 n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~-~~llpVLveVYsSs  567 (1051)
T KOG0168|consen  489 NLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFG-KDLLPVLVEVYSSS  567 (1051)
T ss_pred             cccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHH-HHHHHHHHHHHhcc
Confidence                                     0001             0         0001122222333 34788888888876


Q ss_pred             -chhhHHHHHHHHHHhcCCCCHHHHHHHHH-cCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHH
Q 012897          306 -EFDIKKEAAWAISNATSGGTHEQIKYLVR-EGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQY  383 (454)
Q Consensus       306 -~~~v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~  383 (454)
                       ++.||..++.||..+....+.+.+..++. ..+-..+-.++.+.+..+..-+++...-++++-+.            .|
T Consensus       568 A~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd------------~F  635 (1051)
T KOG0168|consen  568 ANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPD------------TF  635 (1051)
T ss_pred             CCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHH------------Hh
Confidence             99999999999999999888888777665 45667788899999999999999999999987443            48


Q ss_pred             HHHHHHhccHHHHHHHhcCC
Q 012897          384 AQLVEEAEGLEKIENLQSHD  403 (454)
Q Consensus       384 ~~~l~~~g~~~~l~~l~~~~  403 (454)
                      ...|+++|++..+.+|....
T Consensus       636 ~~~F~REGV~~~v~~L~~~~  655 (1051)
T KOG0168|consen  636 SPSFRREGVFHAVKQLSVDS  655 (1051)
T ss_pred             hhhHhhhhHHHHHHHHhccC
Confidence            88999999999999997643

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.80  E-value=8.6e-18  Score=159.27  Aligned_cols=360  Identities=20%  Similarity=0.226  Sum_probs=273.6

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch--hhHHHH
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE--NTKVVI   79 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~   79 (454)
                      ++.|.+.++.+|-.|+..+..++... ......+-+.|.++.|+.+|.+.. .+++.+|+++|.|+..+...  ++-.+.
T Consensus       239 i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~NKlai~  316 (717)
T KOG1048|consen  239 ISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSNKLAIK  316 (717)
T ss_pred             HHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCcccchhhh
Confidence            45678899999999999999988775 555667778899999999999999 99999999999999986655  888889


Q ss_pred             hCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc-hh------------hhhhHHHHH
Q 012897           80 DHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN-ER------------AKLSMLRNA  145 (454)
Q Consensus        80 ~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~------------~~~~~~~~a  145 (454)
                      +.++++.++.+|.. .|.++++....+|+||++. +..+..++. ..+..|...+. ..            .+.++..++
T Consensus       317 ~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~  394 (717)
T KOG1048|consen  317 ELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNV  394 (717)
T ss_pred             hcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceeeehh
Confidence            99999999999997 8999999999999999866 344444443 34555554442 11            136789999


Q ss_pred             HHHHHhhcCCCC--CCChhhhhchHHHHHHhhc------CCChhHHHHHHHHHHHhccCCh-----H-------------
Q 012897          146 TWTLSNFCRGKP--QPPFDQVRPALPALAQLVH------SNDEEVLTDACWALSYLSDGTN-----D-------------  199 (454)
Q Consensus       146 ~~~L~~l~~~~~--~~~~~~~~~~l~~l~~ll~------~~~~~v~~~a~~~L~~l~~~~~-----~-------------  199 (454)
                      ..+|.|++....  ...+....|.+..|+..++      ..|.+.++++...+.|++..-.     .             
T Consensus       395 tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~  474 (717)
T KOG1048|consen  395 TGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPG  474 (717)
T ss_pred             hhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccccccc
Confidence            999999998652  2233345788888887775      3467778899999998874311     0             


Q ss_pred             -------------HHHH----------------------HHHhCcHHHHHHhc-CCCCCcchhhHHHHHhHhhccCccch
Q 012897          200 -------------KIQA----------------------VIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTGDDFQT  243 (454)
Q Consensus       200 -------------~~~~----------------------~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~  243 (454)
                                   ..+.                      +....++..-+.++ .+.++.+.++++.+|.|++.+.....
T Consensus       475 ~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~  554 (717)
T KOG1048|consen  475 VGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWS  554 (717)
T ss_pred             CCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcch
Confidence                         0000                      11111233322233 23456788999999999998765332


Q ss_pred             h----hh-hccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc------chhhHHH
Q 012897          244 Q----CI-ITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA------EFDIKKE  312 (454)
Q Consensus       244 ~----~~-~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~------~~~v~~~  312 (454)
                      .    .+ .+..+++.++++|..+ +..+...++.+|.|++.+. . .+.++...+++.|++.+...      +.++...
T Consensus       555 ~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d~-r-nk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~  631 (717)
T KOG1048|consen  555 EYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRDI-R-NKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRA  631 (717)
T ss_pred             hHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccCc-h-hhhhhhcchHHHHHHhCcCCCCCcCchHHHHHH
Confidence            2    23 5678999999999999 9999999999999999752 2 33556688999999999764      3688889


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCC-CHHHHHHHHHHHHHHHHhhhh
Q 012897          313 AAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP-DPRIVTVCLEGLENILKVGEA  369 (454)
Q Consensus       313 a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~-~~~v~~~al~~L~~l~~~~~~  369 (454)
                      ++.+|.++... +....+.+.+.+.++.|+.+.++. ++++.+++...|..+..+.+-
T Consensus       632 vc~tl~niv~~-~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eL  688 (717)
T KOG1048|consen  632 VCHTLNNIVRK-NVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKEL  688 (717)
T ss_pred             HHHhHHHHHHH-hHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999865 567778889999999999988764 568888888888888776553

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.80  E-value=7.8e-16  Score=148.05  Aligned_cols=394  Identities=16%  Similarity=0.163  Sum_probs=288.3

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      +.+|++.+.+....++..|.+++...  .....  ..++.+.|...|.+++ +.+|..+++.+.++..++......+.+.
T Consensus        44 f~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~l--~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~~~~  118 (503)
T PF10508_consen   44 FDCLNTSNREQVELICDILKRLLSAL--SPDSL--LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLLVDN  118 (503)
T ss_pred             HHHHhhcChHHHHHHHHHHHHHHhcc--CHHHH--HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence            45677888888889999999998774  22221  5567899999999999 9999999999999998777778888889


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCC-CC
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ-PP  160 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~  160 (454)
                      ++++.++.++.+++..+...|+.+|.+++...+.. +.++..+.+..|..++ ...+..++..+..++.+++..++. ..
T Consensus       119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~~~~  196 (503)
T PF10508_consen  119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPEAAE  196 (503)
T ss_pred             cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHHHHH
Confidence            99999999999999999999999999999766544 5566777788888888 555778899999999999877633 33


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcc------hhhHHHHHhH
Q 012897          161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSV------LIPALRTVGN  234 (454)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v------~~~a~~~L~~  234 (454)
                      .....|+++.++..+.++|.-++.+++..+..++. .+...+.+.+.|+++.|..++.+...+-      ....+...++
T Consensus       197 ~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~  275 (503)
T PF10508_consen  197 AVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGN  275 (503)
T ss_pred             HHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHH
Confidence            34457899999999999999999999999999998 4556688899999999999997643222      2233466677


Q ss_pred             hhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHH-HhC-CC----hHHHHHHhhhcchh
Q 012897          235 IVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAV-IDA-GL----VGPLVNLLQNAEFD  308 (454)
Q Consensus       235 l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~~-~~----i~~L~~ll~~~~~~  308 (454)
                      ++...+....... ..++..+..++.+. ++..+..|.-+++.++.. .+....+ ... +.    +........++..+
T Consensus       276 la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~  352 (503)
T PF10508_consen  276 LARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTE  352 (503)
T ss_pred             HHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCCchH
Confidence            7764332221111 24556667777777 899999999999999854 5555555 332 23    34444444556788


Q ss_pred             hHHHHHHHHHHhcCCCCH---HHH----HHHH---HcCCcH-HHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCc
Q 012897          309 IKKEAAWAISNATSGGTH---EQI----KYLV---REGCIK-PLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTAT  377 (454)
Q Consensus       309 v~~~a~~aL~~l~~~~~~---~~~----~~l~---~~~~i~-~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~  377 (454)
                      +|..++.++.++......   +..    ....   ..+... .++.+++.+=|+++.+++..|..++...--        
T Consensus       353 lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg--------  424 (503)
T PF10508_consen  353 LKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWG--------  424 (503)
T ss_pred             HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHH--------
Confidence            999999999999654432   111    1111   124445 788899988899999999999999875322        


Q ss_pred             ccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 012897          378 ADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW  419 (454)
Q Consensus       378 ~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~  419 (454)
                           ...+....|.++-+..-....+.+.++.=-.++..+.
T Consensus       425 -----~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~  461 (503)
T PF10508_consen  425 -----QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA  461 (503)
T ss_pred             -----HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence                 2445566666666655444455555433333444444

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.80  E-value=2.1e-16  Score=151.91  Aligned_cols=369  Identities=17%  Similarity=0.177  Sum_probs=279.3

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 012897           41 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV  120 (454)
Q Consensus        41 l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  120 (454)
                      .+.+..+|+..+ .+....++.+|..+.... .....  ..++.+.|...|.++++.+|..+++.+.++..++......+
T Consensus        40 ~~~lf~~L~~~~-~e~v~~~~~iL~~~l~~~-~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~  115 (503)
T PF10508_consen   40 EPVLFDCLNTSN-REQVELICDILKRLLSAL-SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLL  115 (503)
T ss_pred             HHHHHHHHhhcC-hHHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHh
Confidence            344888898887 677788888999888722 22222  45678999999999999999999999999998887777788


Q ss_pred             HhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH
Q 012897          121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDK  200 (454)
Q Consensus       121 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  200 (454)
                      .+.+.++.++.++ .+++..+...|+.+|..++............+.++.|..++...++.+|..++.++.+++..+++.
T Consensus       116 ~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~  194 (503)
T PF10508_consen  116 VDNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA  194 (503)
T ss_pred             cCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence            8889999999999 888999999999999999987654444445666889999998888999999999999999999988


Q ss_pred             HHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchh-----HHHHHHHHH
Q 012897          201 IQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKS-----IKKEACWTI  275 (454)
Q Consensus       201 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~-----v~~~a~~~L  275 (454)
                      ...+.+.|+++.++..+.+++.-++.+++.++..++. .+...+.+.+.|+++.|..++.+.....     .-.......
T Consensus       195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~  273 (503)
T PF10508_consen  195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF  273 (503)
T ss_pred             HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence            8889999999999999999888899999999999999 6667888999999999999997652222     222334566


Q ss_pred             HHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHH-HHc-----CCcHHHhhccCCCC
Q 012897          276 SNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYL-VRE-----GCIKPLCDLFVCPD  349 (454)
Q Consensus       276 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l-~~~-----~~i~~L~~~l~~~~  349 (454)
                      ++++...+..+.... ..++..+.+++.+.++..+..|..+++.++.  +.+....+ ...     .++..+.....+..
T Consensus       274 g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~  350 (503)
T PF10508_consen  274 GNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGS  350 (503)
T ss_pred             HHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCc
Confidence            777764444332222 3466777788888899999999999999987  44555555 322     24555556666778


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHH-HHHHHhcCCCHHHHHHHHHHHHHhcC
Q 012897          350 PRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLE-KIENLQSHDNNEIYEKAVKILETYWL  420 (454)
Q Consensus       350 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~-~l~~l~~~~~~~v~~~a~~~l~~~~~  420 (454)
                      .+++..++.++.+++..........-.. ....+...+. .+... .+..+.+.+=++++..+..++..+..
T Consensus       351 ~~lk~r~l~al~~il~~~~~~~~~~i~~-~~~~w~~~~~-~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~  420 (503)
T PF10508_consen  351 TELKLRALHALASILTSGTDRQDNDILS-ITESWYESLS-GSPLSNLLMSLLKQPFPELRCAAYRLLQALAA  420 (503)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCchHHHHH-HHHHHHHHhc-CCchHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence            8999999999999987655311100000 0111112222 22222 56777888889999999998887654

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.77  E-value=2.7e-16  Score=138.25  Aligned_cols=396  Identities=14%  Similarity=0.090  Sum_probs=279.0

Q ss_pred             ccCCCHHHHHHHHHHHHHHhccCC--CCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 012897            5 VWSDDSSLQLEATTQFRKLLSIER--SPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG   82 (454)
Q Consensus         5 L~s~d~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g   82 (454)
                      +...+..++..+..++.+.+.++.  +...+.-+..+.++.|.+...+++ .++..++.++|+|+|..+.+.|..+.+.|
T Consensus        51 i~~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lg  129 (604)
T KOG4500|consen   51 IMTASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLG  129 (604)
T ss_pred             eeeccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcC
Confidence            344566778888888888875531  112333466778888999999987 89999999999999999999999999999


Q ss_pred             ChHHHHHhhCC-------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchh-h-----------------
Q 012897           83 AVPIFVKLLAS-------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER-A-----------------  137 (454)
Q Consensus        83 ~i~~L~~lL~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~-----------------  137 (454)
                      +-..++..|+.       .+.+....+...|.|...++.+.+..+.+.|+++.|...+.-+ .                 
T Consensus       130 Gaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls  209 (604)
T KOG4500|consen  130 GAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLS  209 (604)
T ss_pred             CceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHH
Confidence            98888887764       2357777888999999999999999999999999877665210 0                 


Q ss_pred             ---------------------------hhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcC-CChh-------H
Q 012897          138 ---------------------------KLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS-NDEE-------V  182 (454)
Q Consensus       138 ---------------------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~-~~~~-------v  182 (454)
                                                 .++..+.+...+...+.++...-.....|.+..++.+++. .+..       .
T Consensus       210 ~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l  289 (604)
T KOG4500|consen  210 FVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNL  289 (604)
T ss_pred             HHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHH
Confidence                                       1223333444444444443222223335555666666654 1111       1


Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHhC-cHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcC
Q 012897          183 LTDACWALSYLSDGTNDKIQAVIEAG-VCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH  261 (454)
Q Consensus       183 ~~~a~~~L~~l~~~~~~~~~~~~~~~-~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~  261 (454)
                      ...++....-+... ++..+.+...+ ++..+..++.+.+......+.-+++|+++... .+..+++.+++..|++++..
T Consensus       290 ~k~~~el~vllltG-DeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~  367 (604)
T KOG4500|consen  290 FKRIAELDVLLLTG-DESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQ  367 (604)
T ss_pred             HHhhhhHhhhhhcC-chHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHH
Confidence            12222222222223 33445555545 88899999999999999999999999999665 45568888999999999954


Q ss_pred             C----cchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCC
Q 012897          262 S----HKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGC  337 (454)
Q Consensus       262 ~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~  337 (454)
                      .    .+-.++..++.+|.|+.-..+ ++..++..|+.+.++.+++...|++...-+.++.-+....+.-..+.......
T Consensus       368 ~~~vdgnV~~qhA~lsALRnl~IPv~-nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l  446 (604)
T KOG4500|consen  368 EKDVDGNVERQHACLSALRNLMIPVS-NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPEL  446 (604)
T ss_pred             hcCCCccchhHHHHHHHHHhccccCC-chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHH
Confidence            1    144677788999999987422 34467788999999999999999999999999987766432222222233466


Q ss_pred             cHHHhhccCCCCHH-HHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHH
Q 012897          338 IKPLCDLFVCPDPR-IVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKIL  415 (454)
Q Consensus       338 i~~L~~~l~~~~~~-v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l  415 (454)
                      ++.|++.-+++|.. +.-.+.+.+..+++......           ....+.+.|+++....+....+-.+++.|...+
T Consensus       447 ~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kd-----------v~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal  514 (604)
T KOG4500|consen  447 FEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKD-----------VILTVPKSGGIKEKVSMFTKNHINMQNEALVAL  514 (604)
T ss_pred             HHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhh-----------hHhhccccccHHHHHHHHHHhhHHHhHHHHHHH
Confidence            88888888888765 77778888888887643321           445667799999999998888888888776644

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.76  E-value=2.8e-16  Score=155.79  Aligned_cols=353  Identities=20%  Similarity=0.213  Sum_probs=272.4

Q ss_pred             HHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC--ChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHH---
Q 012897           14 LEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED--YPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV---   88 (454)
Q Consensus        14 ~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~---   88 (454)
                      ..-++.|..+.+.  .+....+...|.++.|+++|.-++  +.+.+..|-.+|.|+....++....-.+..++..|-   
T Consensus       212 ee~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIr  289 (2195)
T KOG2122|consen  212 EEMARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIR  289 (2195)
T ss_pred             HHHHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHH
Confidence            4556667677665  566777889999999999998765  257899999999999986655543333323333322   


Q ss_pred             -------HhhCC-----CC--HHHHH-HHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhch-----------hhhhhHH
Q 012897           89 -------KLLAS-----PS--DDVRE-QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE-----------RAKLSML  142 (454)
Q Consensus        89 -------~lL~~-----~~--~~v~~-~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-----------~~~~~~~  142 (454)
                             .+++.     ..  .+.+. .|+.+|..+ +.++++|..+.+.|+++.+-+++..           ..+..++
T Consensus       290 aYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~-SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLR  368 (2195)
T KOG2122|consen  290 AYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKL-SFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALR  368 (2195)
T ss_pred             HHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHh-hccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence                   22222     11  23333 455666666 4667899999999999999988742           2245799


Q ss_pred             HHHHHHHHhhcCCCCCC--ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHH-HhCcHHHHHHhc-C
Q 012897          143 RNATWTLSNFCRGKPQP--PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELL-G  218 (454)
Q Consensus       143 ~~a~~~L~~l~~~~~~~--~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll-~  218 (454)
                      +++..+|.||+..+...  ......+++..++..|.+..+++.......|.||+...+.+...++ +.|-+..|.... .
T Consensus       369 rYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~  448 (2195)
T KOG2122|consen  369 RYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALR  448 (2195)
T ss_pred             HHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHH
Confidence            99999999999987333  3334589999999999999989999999999999987766655554 457777777664 5


Q ss_pred             CCCCcchhhHHHHHhHhhccCccchhhhh-ccCChHHHHHhhcCC---cchhHHHHHHHHHHHHhc---CCHHHHHHHHh
Q 012897          219 HPSPSVLIPALRTVGNIVTGDDFQTQCII-TYGALPYLLGLLTHS---HKKSIKKEACWTISNITA---GNRDQIQAVID  291 (454)
Q Consensus       219 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~L~~~---~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~  291 (454)
                      ...+......+.+||||+.++.+.+..+- -.|.+..|+.+|...   ..-.+.+.+..+|.|++.   .++.+++.+.+
T Consensus       449 ~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~  528 (2195)
T KOG2122|consen  449 NKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRR  528 (2195)
T ss_pred             hcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHH
Confidence            55667888999999999998877765554 458999999999643   144677889999998886   46777878889


Q ss_pred             CCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhh
Q 012897          292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAE  370 (454)
Q Consensus       292 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~  370 (454)
                      .+.+..|++.|++.+..+..++|.+|.||... +++..+.|++.|.+..|..++.+++..+..-+..+|.|++..-...
T Consensus       529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPAk  606 (2195)
T KOG2122|consen  529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPAK  606 (2195)
T ss_pred             hhHHHHHHHHhhhcceEEeecchhhhhhhhcC-CHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCchh
Confidence            99999999999999999999999999999887 4556688899999999999999999999999999999999876433

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.76  E-value=5.6e-16  Score=132.13  Aligned_cols=310  Identities=13%  Similarity=0.139  Sum_probs=255.2

Q ss_pred             cCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC-ChhHHHHHHHHHHHhcCCCchhhHHHHhCCCh
Q 012897            6 WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTKVVIDHGAV   84 (454)
Q Consensus         6 ~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i   84 (454)
                      .+++..+-..++.+|..+..+.  +   .+.+..+...++++|.... +.++....+.++..-|..++.++..+++.++.
T Consensus       117 ~~~~~~~l~ksL~al~~lt~~q--p---dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il  191 (461)
T KOG4199|consen  117 ESPNESVLKKSLEAINSLTHKQ--P---DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL  191 (461)
T ss_pred             hCCchhHHHHHHHHHHHhhcCC--c---chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence            4677888899999998888764  2   2456677888999987643 37888888999999998899999999999999


Q ss_pred             HHHHHhhCC-CCHHHHHHHHHHHHHhhCCCh---------hhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcC
Q 012897           85 PIFVKLLAS-PSDDVREQAVWALGNVAGDSP---------RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  154 (454)
Q Consensus        85 ~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~---------~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  154 (454)
                      +.+...|.. +...+.+.+.|+++.+..+++         .+...+...+++..|++.+.-..++.+....+.+|..|+-
T Consensus       192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV  271 (461)
T KOG4199|consen  192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV  271 (461)
T ss_pred             HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence            999987765 344577778999999876543         2345667777889999999767789999999999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCC-hh---HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC--CCCCcchhhH
Q 012897          155 GKPQPPFDQVRPALPALAQLVHSND-EE---VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG--HPSPSVLIPA  228 (454)
Q Consensus       155 ~~~~~~~~~~~~~l~~l~~ll~~~~-~~---v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a  228 (454)
                      .++........|++..++.++.+.+ ..   ....++..|..++-+++ ....+++.|+.+.++.++.  ..+|.+...+
T Consensus       272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~Ds-vKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~  350 (461)
T KOG4199|consen  272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDS-VKSTIVEKGGLDKIITLALRHSDDPLVIQEV  350 (461)
T ss_pred             HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCc-hHHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence            7766777778999999999998743 33   45678888888886544 5577899999999999873  3678899999


Q ss_pred             HHHHhHhhccCccchhhhhccCChHHHHHhhc-CCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcch
Q 012897          229 LRTVGNIVTGDDFQTQCIITYGALPYLLGLLT-HSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEF  307 (454)
Q Consensus       229 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~  307 (454)
                      +.+++.++-..++....+++.|+-...++.|+ ++....++++|||.+.|++..+.++...++ ..+++.|+......++
T Consensus       351 ~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l-~~GiE~Li~~A~~~h~  429 (461)
T KOG4199|consen  351 MAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILL-ANGIEKLIRTAKANHE  429 (461)
T ss_pred             HHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHH-hccHHHHHHHHHhcCc
Confidence            99999999999999999999999999999996 444668999999999999998888887777 4678889999999899


Q ss_pred             hhHHHHHHHHHHhcC
Q 012897          308 DIKKEAAWAISNATS  322 (454)
Q Consensus       308 ~v~~~a~~aL~~l~~  322 (454)
                      .....|..+|..+-.
T Consensus       430 tce~~akaALRDLGc  444 (461)
T KOG4199|consen  430 TCEAAAKAALRDLGC  444 (461)
T ss_pred             cHHHHHHHHHHhcCc
Confidence            999999999988855

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=1.9e-15  Score=134.91  Aligned_cols=384  Identities=16%  Similarity=0.157  Sum_probs=286.3

Q ss_pred             CcccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897            1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID   80 (454)
Q Consensus         1 lv~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (454)
                      +|++|.-++.++.......|.++...  .++...|...|++..|++++...+ ++++..++..+.|++- +...+..++.
T Consensus       309 LVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSF-D~glr~KMv~  384 (791)
T KOG1222|consen  309 LVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSF-DSGLRPKMVN  384 (791)
T ss_pred             HHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccc-cccccHHHhh
Confidence            36677888888888888888888776  578888999999999999999999 9999999999999998 7788999999


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897           81 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP  160 (454)
Q Consensus        81 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (454)
                      .|.+|.+..++.+..  -...|+..+..++.+. ..+..+...++++.+++.+....+.++-...+...-|+|.+..+.+
T Consensus       385 ~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD-~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQ  461 (791)
T KOG1222|consen  385 GGLLPHLASLLDSDT--KHGIALNMLYHLSCDD-DAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQ  461 (791)
T ss_pred             ccchHHHHHHhCCcc--cchhhhhhhhhhccCc-HHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccce
Confidence            999999999997643  3344677888886544 4677777778888888877677777777777777789998876666


Q ss_pred             hhhhhchHHHHHHh-hcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCCcchhhHHHHHhHhhcc
Q 012897          161 FDQVRPALPALAQL-VHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTG  238 (454)
Q Consensus       161 ~~~~~~~l~~l~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~  238 (454)
                      .......+..|... +.+.|+-+    ...+.|++.+.......+++  .+..|...++. .++.....++.+++|+...
T Consensus       462 lvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~  535 (791)
T KOG1222|consen  462 LVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLANLKVT  535 (791)
T ss_pred             EEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccC
Confidence            66666677776654 55555543    34567788776544444543  45666666654 4566788899999999876


Q ss_pred             CccchhhhhccCChHHHHHhhcCCc-chhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc--chhhHHHHHH
Q 012897          239 DDFQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDIKKEAAW  315 (454)
Q Consensus       239 ~~~~~~~~~~~~~l~~L~~~L~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~  315 (454)
                      .-.+...+-+.+.+|.+-..|..+. ..++.-....+++.++.. ..+...+...++++.++++++..  +.+...+...
T Consensus       536 dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~Qiiy  614 (791)
T KOG1222|consen  536 DLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIY  614 (791)
T ss_pred             CCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHH
Confidence            6667777778899999999987542 345666777777777754 34444555789999999999874  7788888889


Q ss_pred             HHHHhcCCCCHHHHHHHHH-cCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHH
Q 012897          316 AISNATSGGTHEQIKYLVR-EGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLE  394 (454)
Q Consensus       316 aL~~l~~~~~~~~~~~l~~-~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~  394 (454)
                      ++..+..+  ...+..++. ...-..+++++.+.+.++++.|-.+|.-+...+....+....      -+.....+.+++
T Consensus       615 VF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAKrI~~------EkFrwHNsQWLe  686 (791)
T KOG1222|consen  615 VFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAKRIAG------EKFRWHNSQWLE  686 (791)
T ss_pred             HHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHHHHhh------hhcccchhHHHH
Confidence            99888885  344555554 566778999999999999999999999998887776653221      122334455555


Q ss_pred             HHHHHhcCCCHH
Q 012897          395 KIENLQSHDNNE  406 (454)
Q Consensus       395 ~l~~l~~~~~~~  406 (454)
                      -.+.-+.++++.
T Consensus       687 MVEs~q~ddsEq  698 (791)
T KOG1222|consen  687 MVESQQRDDSEQ  698 (791)
T ss_pred             HHHHhhccchhh
Confidence            555545544443

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=5.7e-15  Score=145.36  Aligned_cols=359  Identities=19%  Similarity=0.215  Sum_probs=253.3

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc---hhhHHH
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS---ENTKVV   78 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~   78 (454)
                      +++.+|+|+..|..|+..|..+...........  -..+.+.+.+.+.+++++ +|..|+++++.++...+   ..++.+
T Consensus       124 ~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~--~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~~  200 (1075)
T KOG2171|consen  124 FQSTKSPNPSLRESALLILSSLPETFGNTLQPH--LDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEVDKF  200 (1075)
T ss_pred             HHHhcCCCcchhHHHHHHHHhhhhhhccccchh--HHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHHHHH
Confidence            567799999999999999999876542222111  112577788899999855 99999999999887443   333333


Q ss_pred             HhCCChHHHHHhhC----CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc-hhhhhhHHHHHHHHHHhhc
Q 012897           79 IDHGAVPIFVKLLA----SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN-ERAKLSMLRNATWTLSNFC  153 (454)
Q Consensus        79 ~~~g~i~~L~~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~  153 (454)
                      .  ..+|.++..+.    .++......++.+|..++...+.+-...+. .++...+++.. ++-++.+|..|+.+|..++
T Consensus       201 ~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~  277 (1075)
T KOG2171|consen  201 R--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLS  277 (1075)
T ss_pred             H--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence            3  45666666554    466777788888888888666543222211 12333333332 2234556666666555554


Q ss_pred             CCCCC----------------------------------------------------------CChhhhhchHHHHHHhh
Q 012897          154 RGKPQ----------------------------------------------------------PPFDQVRPALPALAQLV  175 (454)
Q Consensus       154 ~~~~~----------------------------------------------------------~~~~~~~~~l~~l~~ll  175 (454)
                      +..+.                                                          ........+++.+-.++
T Consensus       278 e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l  357 (1075)
T KOG2171|consen  278 EYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAML  357 (1075)
T ss_pred             HhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHh
Confidence            43100                                                          00011133455666777


Q ss_pred             cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHH
Q 012897          176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYL  255 (454)
Q Consensus       176 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L  255 (454)
                      .+.+..-|.+++.+|+.++.+..+.+...+. .+++.++..+.++++.||.+||.+++.++..-....+.-....+++.|
T Consensus       358 ~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL  436 (1075)
T KOG2171|consen  358 QSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPAL  436 (1075)
T ss_pred             cCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHH
Confidence            8899999999999999999998877776555 788999999999999999999999999998766666666677888999


Q ss_pred             HHhhcCCcchhHHHHHHHHHHHHhcC-CHHHHHHHHhCCChH-HHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHH
Q 012897          256 LGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVG-PLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLV  333 (454)
Q Consensus       256 ~~~L~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~-~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~  333 (454)
                      +..+.+..++.++..|+.++-|++.. ..+.+...+ .+++. .+..+++++.+.+++.+..+|+..+......+.+|+-
T Consensus       437 ~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d  515 (1075)
T KOG2171|consen  437 IALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFD  515 (1075)
T ss_pred             HHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHH
Confidence            99999987889999999999999984 344444444 34566 5555666779999999999999999877777777765


Q ss_pred             HcCCcHHHhhccCCCC----HHHHHHHHHHHHHHHHhhhhh
Q 012897          334 REGCIKPLCDLFVCPD----PRIVTVCLEGLENILKVGEAE  370 (454)
Q Consensus       334 ~~~~i~~L~~~l~~~~----~~v~~~al~~L~~l~~~~~~~  370 (454)
                      .  .++.|..++.+.+    ..++-++..|+.-+-....+.
T Consensus       516 ~--~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke  554 (1075)
T KOG2171|consen  516 R--LMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKE  554 (1075)
T ss_pred             H--HHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhh
Confidence            5  7888888888655    346777777777776554443

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.72  E-value=1.1e-14  Score=124.39  Aligned_cols=317  Identities=17%  Similarity=0.184  Sum_probs=249.1

Q ss_pred             cCCHHHHHHh---hcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCC
Q 012897           38 SGVVPRFVEF---LMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGD  112 (454)
Q Consensus        38 ~~~l~~L~~l---L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~  112 (454)
                      .|..+.++-.   -.+++ ..+...++.+|..+..+.|+.    ++..++..++.+|..  .+.++....+.++..-|..
T Consensus       103 ~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpdl----~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~  177 (461)
T KOG4199|consen  103 NGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPDL----FDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIM  177 (461)
T ss_pred             CCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcch----hccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence            3555544433   33445 778889999999998866654    466789999998864  6688888889999999988


Q ss_pred             ChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC----------hhhhhchHHHHHHhhcCC-Chh
Q 012897          113 SPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP----------FDQVRPALPALAQLVHSN-DEE  181 (454)
Q Consensus       113 ~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~----------~~~~~~~l~~l~~ll~~~-~~~  181 (454)
                      .+.+|+.+++.++++.+.+.+.......+.+..+|+++.|..++..+.          .....+++..|+..+.-. +|.
T Consensus       178 hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~  257 (461)
T KOG4199|consen  178 HEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPD  257 (461)
T ss_pred             hHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCcc
Confidence            888999999999999999888766666899999999999998763321          112245677788877643 688


Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC-Cc---chhhHHHHHhHhhccCccchhhhhccCChHHHHH
Q 012897          182 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS-PS---VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLG  257 (454)
Q Consensus       182 v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~---v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~  257 (454)
                      +....+.+|..++..+ +....+.+.|++..++.++.+.+ ..   ..+.++..|..++ +++..+..+++.|+.+.++.
T Consensus       258 ~L~~l~~tl~~lAVr~-E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~  335 (461)
T KOG4199|consen  258 SLVSLSTTLKALAVRD-EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIIT  335 (461)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHH
Confidence            9999999999998764 46688999999999999998843 33   3456777777777 46678888999999999988


Q ss_pred             hhc-CCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc--chhhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 012897          258 LLT-HSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDIKKEAAWAISNATSGGTHEQIKYLVR  334 (454)
Q Consensus       258 ~L~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~  334 (454)
                      ++. +..+|.+..+++.+++-++..+|++-..+++.|+-...++.++..  ...++++++|.+.|+...+ .+++..++.
T Consensus       336 l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs-~~~~~~~l~  414 (461)
T KOG4199|consen  336 LALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS-AENRTILLA  414 (461)
T ss_pred             HHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh-hhccchHHh
Confidence            873 444889999999999999998899998999999988888888763  6789999999999999874 455555554


Q ss_pred             cCCcHHHhhccCCCCHHHHHHHHHHHHHH
Q 012897          335 EGCIKPLCDLFVCPDPRIVTVCLEGLENI  363 (454)
Q Consensus       335 ~~~i~~L~~~l~~~~~~v~~~al~~L~~l  363 (454)
                       .+++.|+..-...++.+...+-.+|..+
T Consensus       415 -~GiE~Li~~A~~~h~tce~~akaALRDL  442 (461)
T KOG4199|consen  415 -NGIEKLIRTAKANHETCEAAAKAALRDL  442 (461)
T ss_pred             -ccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence             4588888888888887777766666665

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=6.8e-15  Score=131.37  Aligned_cols=377  Identities=19%  Similarity=0.131  Sum_probs=278.6

Q ss_pred             HHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHh
Q 012897           11 SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL   90 (454)
Q Consensus        11 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l   90 (454)
                      .+...|+..|.+++..  ...-..|.+.+++..|++.|..++ .++.......|.+++- ..+++..+.+.|+++.|+++
T Consensus       278 qLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~kl  353 (791)
T KOG1222|consen  278 QLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKL  353 (791)
T ss_pred             HHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHh
Confidence            4445677778888866  455667888999999999999999 7999999999999988 67888899999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHH
Q 012897           91 LASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPA  170 (454)
Q Consensus        91 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~  170 (454)
                      +....++++...+..+.|++.+. ..+...+..|.+|.+..++..+..   ..-|+..++.++.++....+.....+++.
T Consensus       354 fp~~h~dL~~~tl~LlfNlSFD~-glr~KMv~~GllP~l~~ll~~d~~---~~iA~~~lYh~S~dD~~K~MfayTdci~~  429 (791)
T KOG1222|consen  354 FPIQHPDLRKATLMLLFNLSFDS-GLRPKMVNGGLLPHLASLLDSDTK---HGIALNMLYHLSCDDDAKAMFAYTDCIKL  429 (791)
T ss_pred             cCCCCHHHHHHHHHHhhhccccc-cccHHHhhccchHHHHHHhCCccc---chhhhhhhhhhccCcHHHHHHHHHHHHHH
Confidence            99999999999999999997554 578888999999999999954332   34466778888887766666677889998


Q ss_pred             HHHhhc-CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhcc
Q 012897          171 LAQLVH-SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITY  249 (454)
Q Consensus       171 l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  249 (454)
                      +.+.+- ..+.++-...+..-.|+|-+.. +.+.+.+...+..|+..--.....+   -++.+.|++.+.......++  
T Consensus       430 lmk~v~~~~~~~vdl~lia~ciNl~lnkR-NaQlvceGqgL~~LM~ra~k~~D~l---LmK~vRniSqHeg~tqn~Fi--  503 (791)
T KOG1222|consen  430 LMKDVLSGTGSEVDLALIALCINLCLNKR-NAQLVCEGQGLDLLMERAIKSRDLL---LMKVVRNISQHEGATQNMFI--  503 (791)
T ss_pred             HHHHHHhcCCceecHHHHHHHHHHHhccc-cceEEecCcchHHHHHHHhcccchH---HHHHHHHhhhccchHHHHHH--
Confidence            887654 4455554444444456665433 3355666666777766542222222   34556677766553444444  


Q ss_pred             CChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc--chhhHHHHHHHHHHhcCCCCHH
Q 012897          250 GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDIKKEAAWAISNATSGGTHE  327 (454)
Q Consensus       250 ~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~  327 (454)
                      ..+.-|..+++...+.....++..+++|+....-+-.+.+.+.+.+|.+-..+..+  ..++......+++.++.  +..
T Consensus       504 dyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~--d~~  581 (791)
T KOG1222|consen  504 DYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR--DLD  581 (791)
T ss_pred             HHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh--hhH
Confidence            34556777777665667888899999999875444444455788999999999875  56688888888888887  445


Q ss_pred             HHHHHHHcCCcHHHhhccCC--CCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCH
Q 012897          328 QIKYLVREGCIKPLCDLFVC--PDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNN  405 (454)
Q Consensus       328 ~~~~l~~~~~i~~L~~~l~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~  405 (454)
                      ....+...++++.|+++++.  .+.+.+...+..+..+++....             ..-++++...-..+..++++.|.
T Consensus       582 cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~t-------------r~~miket~~~AylIDLMHDkN~  648 (791)
T KOG1222|consen  582 CARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELT-------------RRLMIKETALGAYLIDLMHDKNA  648 (791)
T ss_pred             HHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH-------------HHHHHhhccchHHHHHHHhcccH
Confidence            55666788999999999985  5567777788888888876222             35577778778889999999999


Q ss_pred             HHHHHHHHHHH
Q 012897          406 EIYEKAVKILE  416 (454)
Q Consensus       406 ~v~~~a~~~l~  416 (454)
                      ++++-+...+.
T Consensus       649 eiRkVCDn~Ld  659 (791)
T KOG1222|consen  649 EIRKVCDNALD  659 (791)
T ss_pred             HHHHHHHHHHH
Confidence            99877665544

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=1.2e-14  Score=143.11  Aligned_cols=351  Identities=15%  Similarity=0.161  Sum_probs=251.1

Q ss_pred             CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHH
Q 012897            7 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPI   86 (454)
Q Consensus         7 s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~   86 (454)
                      ...+.+|..-+..+..++++.-++     -..++++.|.+..++++ +..|+.|+.+|..+...........+ ..+.+.
T Consensus        91 E~~~~vr~k~~dviAeia~~~l~e-----~WPell~~L~q~~~S~~-~~~rE~al~il~s~~~~~~~~~~~~~-~~l~~l  163 (1075)
T KOG2171|consen   91 ETEPSVRHKLADVIAEIARNDLPE-----KWPELLQFLFQSTKSPN-PSLRESALLILSSLPETFGNTLQPHL-DDLLRL  163 (1075)
T ss_pred             ccchHHHHHHHHHHHHHHHhcccc-----chHHHHHHHHHHhcCCC-cchhHHHHHHHHhhhhhhccccchhH-HHHHHH
Confidence            345788888888888888775222     45678999999999999 99999999999999873332222111 134566


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCCh---hhHHHHHhcCChHHHHHHhc---hhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897           87 FVKLLASPSDDVREQAVWALGNVAGDSP---RCRDLVLSQGALIPLLAQLN---ERAKLSMLRNATWTLSNFCRGKPQPP  160 (454)
Q Consensus        87 L~~lL~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (454)
                      +.+.+.+++..+|..++++++.++...+   ..++.+.  ..+|.++..+.   +..+.+....++.+|..+....+..-
T Consensus       164 f~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l  241 (1075)
T KOG2171|consen  164 FSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLL  241 (1075)
T ss_pred             HHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHH
Confidence            6677777776699999999999874442   2222222  24666666663   34466667888888888887765555


Q ss_pred             hhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCChHHHHHH--HHh-----------------------------
Q 012897          161 FDQVRPALPALAQLVHSN--DEEVLTDACWALSYLSDGTNDKIQAV--IEA-----------------------------  207 (454)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~--~~~-----------------------------  207 (454)
                      ......++.....+..+.  ++.+|..|+.+|..+++..+...+..  +..                             
T Consensus       242 ~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~  321 (1075)
T KOG2171|consen  242 RPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDD  321 (1075)
T ss_pred             HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccccccc
Confidence            555666777777766654  57788888888877765422221110  000                             


Q ss_pred             --------------------------CcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcC
Q 012897          208 --------------------------GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH  261 (454)
Q Consensus       208 --------------------------~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~  261 (454)
                                                -+++.+-.+++++++.-|.+++.+|+.++.++.+.....++ .+++.++..|.+
T Consensus       322 ~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~D  400 (1075)
T KOG2171|consen  322 EETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLND  400 (1075)
T ss_pred             ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCC
Confidence                                      13444555567777788999999999999988766554333 788999999999


Q ss_pred             CcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc-chhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcH-
Q 012897          262 SHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIK-  339 (454)
Q Consensus       262 ~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~-  339 (454)
                      + ++.||..|+.+++.++.+-...++.-....+++.|+..+.+. +++|+..|+.++.|++....++....-. .+++. 
T Consensus       401 p-hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d~lm~~  478 (1075)
T KOG2171|consen  401 P-HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL-DGLMEK  478 (1075)
T ss_pred             C-CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH-HHHHHH
Confidence            9 999999999999999986444455555567888999988875 7899999999999999987766543312 24566 


Q ss_pred             HHhhccCCCCHHHHHHHHHHHHHHHHhhhh
Q 012897          340 PLCDLFVCPDPRIVTVCLEGLENILKVGEA  369 (454)
Q Consensus       340 ~L~~~l~~~~~~v~~~al~~L~~l~~~~~~  369 (454)
                      .+..+++++.+.+++.++.+|..+....+.
T Consensus       479 ~l~~L~~~~~~~v~e~vvtaIasvA~AA~~  508 (1075)
T KOG2171|consen  479 KLLLLLQSSKPYVQEQAVTAIASVADAAQE  508 (1075)
T ss_pred             HHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Confidence            455566778899999999999999876554

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=9.7e-16  Score=141.57  Aligned_cols=393  Identities=18%  Similarity=0.219  Sum_probs=252.2

Q ss_pred             ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh--
Q 012897            3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID--   80 (454)
Q Consensus         3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--   80 (454)
                      .++.+.++-+|--.-..++.+.+...-..     ...++|.|..+|.+++ ....+-|..+|.+++.++.+..+.-..  
T Consensus        97 ~~lgd~~~lIr~tvGivITTI~s~~~~~~-----wpelLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~r  170 (885)
T KOG2023|consen   97 HGLGDASPLIRATVGIVITTIASTGGLQH-----WPELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLTR  170 (885)
T ss_pred             hhccCchHHHHhhhhheeeeeeccccccc-----chhHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcccC
Confidence            34455555555554445555554431111     1457999999999999 788999999999999977665544221  


Q ss_pred             --CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh-cCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCC
Q 012897           81 --HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLS-QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP  157 (454)
Q Consensus        81 --~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  157 (454)
                        .-.+|.++.+.+++++.+|..|+.++..+.-..+..  .... ...++.+..+- .+.+++||++.|.++..|..-.+
T Consensus       171 pl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa--l~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Llevr~  247 (885)
T KOG2023|consen  171 PLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA--LYVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLEVRP  247 (885)
T ss_pred             chHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHH--HHHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcH
Confidence              136899999999999999999999999876443321  1111 11344444444 78899999999999999998877


Q ss_pred             CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH--HHH--------------------------------
Q 012897          158 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDK--IQA--------------------------------  203 (454)
Q Consensus       158 ~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~--~~~--------------------------------  203 (454)
                      ..-.....+++..++...++.|++|...||.....++......  ...                                
T Consensus       248 dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~v  327 (885)
T KOG2023|consen  248 DKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESV  327 (885)
T ss_pred             HhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccC
Confidence            7777778889999999998889889888888887777543110  000                                


Q ss_pred             ---------------------------------------------------------HHHhCcHHHHHHh----cCCCCC
Q 012897          204 ---------------------------------------------------------VIEAGVCPRLVEL----LGHPSP  222 (454)
Q Consensus       204 ---------------------------------------------------------~~~~~~i~~L~~l----l~~~~~  222 (454)
                                                                               ++...+++.++.+    |.++++
T Consensus       328 pDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W  407 (885)
T KOG2023|consen  328 PDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEW  407 (885)
T ss_pred             CchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchh
Confidence                                                                     1111222222222    334455


Q ss_pred             cchhhHHHHHhHhhccCccchhhhhcc--CChHHHHHhhcCCcchhHHHHHHHHHHHHhcC--CHHHHHHHHhCCChHHH
Q 012897          223 SVLIPALRTVGNIVTGDDFQTQCIITY--GALPYLLGLLTHSHKKSIKKEACWTISNITAG--NRDQIQAVIDAGLVGPL  298 (454)
Q Consensus       223 ~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~~L  298 (454)
                      .+|+++..+++.++.++-..   ++..  .+++.++.+|.+. .+-||.-.||+|+..+.-  ... ....+ ..++..|
T Consensus       408 ~vrEagvLAlGAIAEGcM~g---~~p~LpeLip~l~~~L~DK-kplVRsITCWTLsRys~wv~~~~-~~~~f-~pvL~~l  481 (885)
T KOG2023|consen  408 KVREAGVLALGAIAEGCMQG---FVPHLPELIPFLLSLLDDK-KPLVRSITCWTLSRYSKWVVQDS-RDEYF-KPVLEGL  481 (885)
T ss_pred             hhhhhhHHHHHHHHHHHhhh---cccchHHHHHHHHHHhccC-ccceeeeeeeeHhhhhhhHhcCC-hHhhh-HHHHHHH
Confidence            66777777777777654322   1111  3678899999999 999999999999988751  111 21222 1245566


Q ss_pred             HHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcc
Q 012897          299 VNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATA  378 (454)
Q Consensus       299 ~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~  378 (454)
                      ++.+-+++.+|++.|+.++..+-.....+..+++-.  .+..|+..+..-..+-......++..+.......-..     
T Consensus       482 l~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~--IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~-----  554 (885)
T KOG2023|consen  482 LRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEY--ILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNK-----  554 (885)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHH--HHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCc-----
Confidence            666677899999999999999988766666555433  4555555555333333333455566665544332211     


Q ss_pred             cccHHHHHHHHhccHHHHHHHhcC------------------------CCHHHHHHHHHHHHHhcC
Q 012897          379 DVNQYAQLVEEAEGLEKIENLQSH------------------------DNNEIYEKAVKILETYWL  420 (454)
Q Consensus       379 ~~~~~~~~l~~~g~~~~l~~l~~~------------------------~~~~v~~~a~~~l~~~~~  420 (454)
                        ..|.+++. .-.+++.+.+-++                        -.+.|++++..+++...+
T Consensus       555 --~~YiqiLm-PPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q  617 (885)
T KOG2023|consen  555 --PAYIQILM-PPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQ  617 (885)
T ss_pred             --HHHHHHhc-cHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHH
Confidence              11333332 3333444433322                        236789999999997654

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.70  E-value=5.8e-14  Score=123.84  Aligned_cols=357  Identities=13%  Similarity=0.093  Sum_probs=258.9

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCC---C---ChhHHHHHHHHHHHhcCCCchhh
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE---D---YPQLQFEAAWALTNIASGTSENT   75 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~---~---~~~v~~~a~~~L~~l~~~~~~~~   75 (454)
                      .+..+|+|.++..+..++|.+++..+ .+.+..+.+.|+-..+++.|+.-   +   ..+....+...|.|...++.+.+
T Consensus        93 rq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~  171 (604)
T KOG4500|consen   93 RQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELR  171 (604)
T ss_pred             HhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHH
Confidence            35567889999999999999999887 78888999999977777777642   1   24566677888999999999999


Q ss_pred             HHHHhCCChHHHHHhhCC--CCHHHHHH--------------------------------------------HHHHHHHh
Q 012897           76 KVVIDHGAVPIFVKLLAS--PSDDVREQ--------------------------------------------AVWALGNV  109 (454)
Q Consensus        76 ~~~~~~g~i~~L~~lL~~--~~~~v~~~--------------------------------------------a~~~L~~l  109 (454)
                      ..+++.|+++.|...+.-  .+....+.                                            +..+++..
T Consensus       172 aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~  251 (604)
T KOG4500|consen  172 AQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKA  251 (604)
T ss_pred             HHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHH
Confidence            999999999988776532  22222222                                            22222222


Q ss_pred             hCCChhhHHHHHhcCChHHHHHHhchhh-------hhhHHHHHHHHHHhhcCCCCCCChhhhhc-hHHHHHHhhcCCChh
Q 012897          110 AGDSPRCRDLVLSQGALIPLLAQLNERA-------KLSMLRNATWTLSNFCRGKPQPPFDQVRP-ALPALAQLVHSNDEE  181 (454)
Q Consensus       110 ~~~~~~~~~~~~~~~~i~~l~~~l~~~~-------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~l~~l~~ll~~~~~~  181 (454)
                      +. ++..+-.+.+.|.+..+..++.+-+       .......++....-+..+++........+ ++..+..+++++|..
T Consensus       252 ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~  330 (604)
T KOG4500|consen  252 AE-NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSN  330 (604)
T ss_pred             hc-CcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchh
Confidence            21 1122333445566666666664311       22344455555555555443333334344 899999999999999


Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-----CCCcchhhHHHHHhHhhccCccchhhhhccCChHHHH
Q 012897          182 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-----PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLL  256 (454)
Q Consensus       182 v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  256 (454)
                      .+..+..+|+|++++++.. ..+++.+++..|+.++..     ++.+++.+++.+|.|++--. ..+..+...|+.+.++
T Consensus       331 l~t~g~LaigNfaR~D~~c-i~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv-~nka~~~~aGvteaIL  408 (604)
T KOG4500|consen  331 LITMGSLAIGNFARRDDIC-IQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV-SNKAHFAPAGVTEAIL  408 (604)
T ss_pred             HHHHHHHHHHhhhccchHH-HHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC-CchhhccccchHHHHH
Confidence            9999999999999987655 558888999999999844     56778899999999998743 3666788999999999


Q ss_pred             HhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHH-hCCChHHHHHHhhhcchh-hHHHHHHHHHHhcCCCC-HHHHHHHH
Q 012897          257 GLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI-DAGLVGPLVNLLQNAEFD-IKKEAAWAISNATSGGT-HEQIKYLV  333 (454)
Q Consensus       257 ~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~-v~~~a~~aL~~l~~~~~-~~~~~~l~  333 (454)
                      ..++.. .|.+...-..+++.+..+-+.....+. +...+..|+++-+++|.. |..+..+.+.-+..+.. .+....+.
T Consensus       409 ~~lk~~-~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvp  487 (604)
T KOG4500|consen  409 LQLKLA-SPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVP  487 (604)
T ss_pred             HHHHhc-CCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhcc
Confidence            999999 888888888888888766554444555 345788999999888765 88888888888887642 23445556


Q ss_pred             HcCCcHHHhhccCCCCHHHHHHHHHHHHHH
Q 012897          334 REGCIKPLCDLFVCPDPRIVTVCLEGLENI  363 (454)
Q Consensus       334 ~~~~i~~L~~~l~~~~~~v~~~al~~L~~l  363 (454)
                      ++|+++.++.++...+-.++..++-++..+
T Consensus       488 ksg~ik~~Vsm~t~~hi~mqnEalVal~~~  517 (604)
T KOG4500|consen  488 KSGGIKEKVSMFTKNHINMQNEALVALLST  517 (604)
T ss_pred             ccccHHHHHHHHHHhhHHHhHHHHHHHHHH
Confidence            789999999999877766666666555544

>PRK09687 putative lyase; Provisional

Probab=99.69  E-value=4e-15  Score=131.37  Aligned_cols=257  Identities=15%  Similarity=0.144  Sum_probs=202.6

Q ss_pred             cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 012897           38 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR  117 (454)
Q Consensus        38 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  117 (454)
                      .--++.|...|.+.+ ..+|..|++.|..+-.           ...++.+..++.++++.+|..++++|+.+-.... ..
T Consensus        22 ~~~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~~   88 (280)
T PRK09687         22 KLNDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR-CQ   88 (280)
T ss_pred             hccHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-ch
Confidence            345788999999999 8999999999988764           2457888888999999999999999999953221 11


Q ss_pred             HHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 012897          118 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT  197 (454)
Q Consensus       118 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  197 (454)
                      .     ..++.|..++..++++.|+..++.+|++++......    ....+..+...+.++++.|+..++++|+.+..  
T Consensus        89 ~-----~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--  157 (280)
T PRK09687         89 D-----NVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--  157 (280)
T ss_pred             H-----HHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--
Confidence            1     236667777558889999999999999997543211    23456667788888899999999999976642  


Q ss_pred             hHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHH
Q 012897          198 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN  277 (454)
Q Consensus       198 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~n  277 (454)
                               ...++.|+.++.++++.+|..|+.+|+.+...++         ...+.|+..|.+. ++.||..|+++|+.
T Consensus       158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~  218 (280)
T PRK09687        158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLAL  218 (280)
T ss_pred             ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHc
Confidence                     1367889999999999999999999999943333         4567899999988 99999999999998


Q ss_pred             HhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccC-CCCHHHHHHH
Q 012897          278 ITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV-CPDPRIVTVC  356 (454)
Q Consensus       278 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~-~~~~~v~~~a  356 (454)
                      +..  +         .+++.|++.+++++  ++..++.+|+++-.   ++         .++.|..+++ ++|+.++..+
T Consensus       219 ~~~--~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~---~~---------a~p~L~~l~~~~~d~~v~~~a  273 (280)
T PRK09687        219 RKD--K---------RVLSVLIKELKKGT--VGDLIIEAAGELGD---KT---------LLPVLDTLLYKFDDNEIITKA  273 (280)
T ss_pred             cCC--h---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC---Hh---------HHHHHHHHHhhCCChhHHHHH
Confidence            642  2         46888999998765  67889999998854   22         5888888886 7899999999


Q ss_pred             HHHHHH
Q 012897          357 LEGLEN  362 (454)
Q Consensus       357 l~~L~~  362 (454)
                      .+++..
T Consensus       274 ~~a~~~  279 (280)
T PRK09687        274 IDKLKR  279 (280)
T ss_pred             HHHHhc
Confidence            888754

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.66  E-value=5.6e-14  Score=130.36  Aligned_cols=362  Identities=15%  Similarity=0.112  Sum_probs=254.0

Q ss_pred             cccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC-ChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 012897            4 GVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTKVVIDHG   82 (454)
Q Consensus         4 ~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g   82 (454)
                      .+.+.||+....|.....+++.+. ++....+++.|.++.++.++...+ .++.+...+.++.....+.......+.+.+
T Consensus        17 ~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~   95 (678)
T KOG1293|consen   17 RLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRII   95 (678)
T ss_pred             hhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHh
Confidence            355678999999999999998887 455557899999999999988765 267777788888888888889999999999


Q ss_pred             ChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhhHHH--HHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCC
Q 012897           83 AVPIFVKLLASPS-DDVREQAVWALGNVAGDSPRCRDL--VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP  159 (454)
Q Consensus        83 ~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~--~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  159 (454)
                      .++.|+.++.+++ ..+++..++++.++...++.....  .....++..+.-++ ..+...+...-+....+++......
T Consensus        96 ~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~~~hq  174 (678)
T KOG1293|consen   96 ELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSSTKDHQ  174 (678)
T ss_pred             hHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhccccccchhh
Confidence            9999999999988 899999999999998655422111  11122233333333 2233344444445555555554344


Q ss_pred             ChhhhhchHHHHHHhhcCCChhHHHHHHHHHH---HhccCChHHHHH----HHHhCcHHH--HHHhcCCCCC--------
Q 012897          160 PFDQVRPALPALAQLVHSNDEEVLTDACWALS---YLSDGTNDKIQA----VIEAGVCPR--LVELLGHPSP--------  222 (454)
Q Consensus       160 ~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~---~l~~~~~~~~~~----~~~~~~i~~--L~~ll~~~~~--------  222 (454)
                      ......++.+.+.-++...+...|..++.+++   ++..+++.....    +.+.++.+.  +..++++++.        
T Consensus       175 ~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~  254 (678)
T KOG1293|consen  175 LILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLE  254 (678)
T ss_pred             heeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHH
Confidence            44445667777777777777778888888887   555554433222    112222221  1111221111        


Q ss_pred             --------------------------------------------------------------------------------
Q 012897          223 --------------------------------------------------------------------------------  222 (454)
Q Consensus       223 --------------------------------------------------------------------------------  222 (454)
                                                                                                      
T Consensus       255 cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ell  334 (678)
T KOG1293|consen  255 CLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELL  334 (678)
T ss_pred             HHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHH
Confidence                                                                                            


Q ss_pred             ---------------------------------------------------------cchhhHHHHHhHhhccCccchhh
Q 012897          223 ---------------------------------------------------------SVLIPALRTVGNIVTGDDFQTQC  245 (454)
Q Consensus       223 ---------------------------------------------------------~v~~~a~~~L~~l~~~~~~~~~~  245 (454)
                                                                               .++.++|.++-++++.-......
T Consensus       335 f~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg  414 (678)
T KOG1293|consen  335 FICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTG  414 (678)
T ss_pred             HHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcC
Confidence                                                                     22333444444443321111111


Q ss_pred             hhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCC
Q 012897          246 IITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGT  325 (454)
Q Consensus       246 ~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  325 (454)
                      +-...+...+++++..+ +..++..+.++++|+..........++..|+|+.+..++.+.++.++..+.|+|.++..+++
T Consensus       415 ~~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~d  493 (678)
T KOG1293|consen  415 LKRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCD  493 (678)
T ss_pred             CccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcch
Confidence            22346778899999888 88999999999999998666667788899999999999999999999999999999999877


Q ss_pred             HHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhh
Q 012897          326 HEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGE  368 (454)
Q Consensus       326 ~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~  368 (454)
                      ......+...-....+..+.+++++.|++.++..|.|+.....
T Consensus       494 e~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~  536 (678)
T KOG1293|consen  494 EEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSR  536 (678)
T ss_pred             HHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcH
Confidence            6666666666667788889999999999999999999986533

>PRK09687 putative lyase; Provisional

Probab=99.65  E-value=1.9e-14  Score=127.09  Aligned_cols=249  Identities=16%  Similarity=0.113  Sum_probs=193.8

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      ++.|.++|..+|..|+++|..+-..            .+++.+..++++++ +.+|..++++|+.+-... ..     ..
T Consensus        29 ~~~L~d~d~~vR~~A~~aL~~~~~~------------~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~-~~-----~~   89 (280)
T PRK09687         29 FRLLDDHNSLKRISSIRVLQLRGGQ------------DVFRLAIELCSSKN-PIERDIGADILSQLGMAK-RC-----QD   89 (280)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhcCcc------------hHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCc-cc-----hH
Confidence            4567899999999999999876422            24677888889988 999999999999987521 11     12


Q ss_pred             CChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897           82 GAVPIFVKL-LASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP  160 (454)
Q Consensus        82 g~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (454)
                      ..++.|..+ ++++++.||..++.+|++++.........     .+..+...+ .+++..|+..++++|..+..      
T Consensus        90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~-----a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~------  157 (280)
T PRK09687         90 NVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPK-----IVEQSQITA-FDKSTNVRFAVAFALSVIND------  157 (280)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchH-----HHHHHHHHh-hCCCHHHHHHHHHHHhccCC------
Confidence            356778776 67789999999999999997443211111     244455555 66688999999999977643      


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897          161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD  240 (454)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  240 (454)
                          ...++.|+.++.++++.++..++.+|+.+....+         .+++.|+..+.+.++.||..|++.|+.+-.  +
T Consensus       158 ----~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--~  222 (280)
T PRK09687        158 ----EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALRKD--K  222 (280)
T ss_pred             ----HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHccCC--h
Confidence                3578999999999999999999999999843332         356778899999999999999999988542  1


Q ss_pred             cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhh-hcchhhHHHHHHHHHH
Q 012897          241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQ-NAEFDIKKEAAWAISN  319 (454)
Q Consensus       241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~  319 (454)
                               ..++.|++.|.++ +  ++..++.+|+++..  +         ..+|.|.++++ .+|..++..+.+++..
T Consensus       223 ---------~av~~Li~~L~~~-~--~~~~a~~ALg~ig~--~---------~a~p~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        223 ---------RVLSVLIKELKKG-T--VGDLIIEAAGELGD--K---------TLLPVLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             ---------hHHHHHHHHHcCC-c--hHHHHHHHHHhcCC--H---------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence                     5688999999887 4  78889999998853  2         36888999997 6799999999998853

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.65  E-value=3.9e-15  Score=147.89  Aligned_cols=268  Identities=20%  Similarity=0.170  Sum_probs=226.2

Q ss_pred             HHH-HHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC-----------ChhHHHHHHHHHHHhcCCCchhhHHHH
Q 012897           12 LQL-EATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-----------YPQLQFEAAWALTNIASGTSENTKVVI   79 (454)
Q Consensus        12 ~~~-~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~-----------~~~v~~~a~~~L~~l~~~~~~~~~~~~   79 (454)
                      -++ .|+..|.++..+  .++...|-+.|+++.+-+++.-..           +..+|..|..+|.||+.++..++..+.
T Consensus       313 H~lcaA~~~lMK~SFD--EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LC  390 (2195)
T KOG2122|consen  313 HQLCAALCTLMKLSFD--EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLC  390 (2195)
T ss_pred             hhhHHHHHHHHHhhcc--HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            344 777788887766  688999999999999988775321           246899999999999998887777776


Q ss_pred             h-CCChHHHHHhhCCCCHHHHHHHHHHHHHhh-CCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCC
Q 012897           80 D-HGAVPIFVKLLASPSDDVREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP  157 (454)
Q Consensus        80 ~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  157 (454)
                      . .|+++.++..|.+..+++.+....+|.||+ .-+...+..+.+.|-+..|+........+......+.+||||+.+..
T Consensus       391 s~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHct  470 (2195)
T KOG2122|consen  391 SQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCT  470 (2195)
T ss_pred             hhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccc
Confidence            4 599999999999999999999999999998 44445677778888899998887677788889999999999999883


Q ss_pred             --CCChhhhhchHHHHHHhhcCC----ChhHHHHHHHHHHHhcc---CChHHHHHHHHhCcHHHHHHhcCCCCCcchhhH
Q 012897          158 --QPPFDQVRPALPALAQLVHSN----DEEVLTDACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPA  228 (454)
Q Consensus       158 --~~~~~~~~~~l~~l~~ll~~~----~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a  228 (454)
                        ...+....|++.+|+.+|.-.    .-.+++.+..+|.|++.   ......+.+.+..++..|++.|++..-.+..++
T Consensus       471 eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNa  550 (2195)
T KOG2122|consen  471 ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNA  550 (2195)
T ss_pred             ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecc
Confidence              334555689999999999643    56688899999988763   345566778889999999999999999999999


Q ss_pred             HHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCC
Q 012897          229 LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN  282 (454)
Q Consensus       229 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~  282 (454)
                      |.+|+||+..+++..+.+++.|.++.|..++.+. +..+-..++.+|.|+....
T Consensus       551 CGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  551 CGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             hhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999 8889999999999998754

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.64  E-value=8.4e-14  Score=143.64  Aligned_cols=270  Identities=19%  Similarity=0.191  Sum_probs=211.5

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      ++.|.++|+.+|..|+..|..+...            ..++.|+..|.+++ +.+|..|+.+|..+....          
T Consensus       627 ~~~L~D~d~~VR~~Av~~L~~~~~~------------~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~----------  683 (897)
T PRK13800        627 APYLADPDPGVRRTAVAVLTETTPP------------GFGPALVAALGDGA-AAVRRAAAEGLRELVEVL----------  683 (897)
T ss_pred             HHHhcCCCHHHHHHHHHHHhhhcch------------hHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcc----------
Confidence            4678899999999999999886422            25788999998888 899999999998875311          


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF  161 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  161 (454)
                      ...+.|...|.++++.+|..++..|..+....            ...++..+ .++++.++..++.+|..+-.       
T Consensus       684 ~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L-~D~d~~VR~~Av~aL~~~~~-------  743 (897)
T PRK13800        684 PPAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAAL-GDPDHRVRIEAVRALVSVDD-------  743 (897)
T ss_pred             CchHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHh-cCCCHHHHHHHHHHHhcccC-------
Confidence            12357778888899999999999998874221            23456667 78889999999999987621       


Q ss_pred             hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCcc
Q 012897          162 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF  241 (454)
Q Consensus       162 ~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  241 (454)
                            .+.+..++.++++.|+..++.+|..+.....         ..++.|..+++++++.+|..|+.+|+.+....  
T Consensus       744 ------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~--  806 (897)
T PRK13800        744 ------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAELGCPP--  806 (897)
T ss_pred             ------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc--
Confidence                  1346778999999999999999998865322         23677889999999999999999999885421  


Q ss_pred             chhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhc
Q 012897          242 QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT  321 (454)
Q Consensus       242 ~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  321 (454)
                              .....+...|.++ ++.||..|+++|+.+..           ...++.|+.+++++++.||..|+++|..+.
T Consensus       807 --------~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~  866 (897)
T PRK13800        807 --------DDVAAATAALRAS-AWQVRQGAARALAGAAA-----------DVAVPALVEALTDPHLDVRKAAVLALTRWP  866 (897)
T ss_pred             --------hhHHHHHHHhcCC-ChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCCCHHHHHHHHHHHhccC
Confidence                    1235688889888 99999999999987742           235688999999999999999999999972


Q ss_pred             CCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHH
Q 012897          322 SGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLEN  362 (454)
Q Consensus       322 ~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~  362 (454)
                        .++.         ..+.|...+++.++.|+..+..+|..
T Consensus       867 --~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        867 --GDPA---------ARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             --CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence              2332         35667788999999999999988863

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.61  E-value=3.8e-13  Score=138.89  Aligned_cols=276  Identities=17%  Similarity=0.197  Sum_probs=217.9

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 012897           39 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD  118 (454)
Q Consensus        39 ~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  118 (454)
                      ..++.|+..|.+++ +.+|..|+..|..+..           .+.++.|...|+++++.+|..++..|..+....+    
T Consensus       621 ~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----  684 (897)
T PRK13800        621 PSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----  684 (897)
T ss_pred             hhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----
Confidence            35778999999999 9999999999998753           3468999999999999999999999988853222    


Q ss_pred             HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 012897          119 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN  198 (454)
Q Consensus       119 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~  198 (454)
                            ..+.+...| +++++.++..++.+|..+....           ...++..|.++++.++..++.+|..+-.   
T Consensus       685 ------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~---  743 (897)
T PRK13800        685 ------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD---  743 (897)
T ss_pred             ------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC---
Confidence                  124566677 5688999999999998875321           2456788999999999999999987521   


Q ss_pred             HHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHH
Q 012897          199 DKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI  278 (454)
Q Consensus       199 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl  278 (454)
                                 .+.|..++.++++.+|..++.+|+.+.....         ..++.|..+++++ ++.+|..|+.+|+.+
T Consensus       744 -----------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg~~  802 (897)
T PRK13800        744 -----------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALAEL  802 (897)
T ss_pred             -----------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHHhc
Confidence                       2346678999999999999999998865322         2367888999998 899999999999988


Q ss_pred             hcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHH
Q 012897          279 TAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE  358 (454)
Q Consensus       279 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~  358 (454)
                      ....          ..++.+...+.++++.||..|+++|..+...            ..++.|..+++++++.|+..+.+
T Consensus       803 g~~~----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L~D~~~~VR~~A~~  860 (897)
T PRK13800        803 GCPP----------DDVAAATAALRASAWQVRQGAARALAGAAAD------------VAVPALVEALTDPHLDVRKAAVL  860 (897)
T ss_pred             CCcc----------hhHHHHHHHhcCCChHHHHHHHHHHHhcccc------------chHHHHHHHhcCCCHHHHHHHHH
Confidence            5421          1235688889999999999999999877431            24688999999999999999999


Q ss_pred             HHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 012897          359 GLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILET  417 (454)
Q Consensus       359 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~  417 (454)
                      +|..+ . .+                     ....+.|...+++++++|+..|...|+.
T Consensus       861 aL~~~-~-~~---------------------~~a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        861 ALTRW-P-GD---------------------PAARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             HHhcc-C-CC---------------------HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            99986 1 11                     0113567788889999999999988763

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=2.6e-14  Score=132.26  Aligned_cols=315  Identities=18%  Similarity=0.194  Sum_probs=222.5

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC----ChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCC
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQG----ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP  157 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~----~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  157 (454)
                      .++|.|+++|.+++....+-|..+|..+|.+++..-+.-....    .++.++++. +++++.+|..|+.++-.+.-...
T Consensus       128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~-~h~spkiRs~A~~cvNq~i~~~~  206 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFF-KHPSPKIRSHAVGCVNQFIIIQT  206 (885)
T ss_pred             hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHH-hCCChhHHHHHHhhhhheeecCc
Confidence            4689999999999999999999999999988765433211111    467777777 77899999999999988876654


Q ss_pred             CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhc
Q 012897          158 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT  237 (454)
Q Consensus       158 ~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  237 (454)
                      ..-......++..+..+-.+.+++||...|.++..+....++....-+. ++++.+++..++.++.|...||.....++.
T Consensus       207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~-~IveyML~~tqd~dE~VALEACEFwla~ae  285 (885)
T KOG2023|consen  207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLD-NIVEYMLQRTQDVDENVALEACEFWLALAE  285 (885)
T ss_pred             HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchH-HHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence            4445556788899999999999999999999999998776655444443 788888888899999999999999999987


Q ss_pred             cCccchhhhhc--cCChHHHHHhhcCCc----------------------------------------------------
Q 012897          238 GDDFQTQCIIT--YGALPYLLGLLTHSH----------------------------------------------------  263 (454)
Q Consensus       238 ~~~~~~~~~~~--~~~l~~L~~~L~~~~----------------------------------------------------  263 (454)
                      .. -....+..  ..++|.|++-|....                                                    
T Consensus       286 qp-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD  364 (885)
T KOG2023|consen  286 QP-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD  364 (885)
T ss_pred             Cc-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence            54 22222221  145555555442110                                                    


Q ss_pred             ---chhHHHHHHHHHHHHhcCCHHHHHHHHhCCC----hHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcC
Q 012897          264 ---KKSIKKEACWTISNITAGNRDQIQAVIDAGL----VGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREG  336 (454)
Q Consensus       264 ---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~----i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~  336 (454)
                         +..+|+-.+.+|.-++.        +....+    +|.|-+.|.++++.+|+.+..|++.++.++-.-..+++-  .
T Consensus       365 ~~~dWNLRkCSAAaLDVLan--------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lp--e  434 (885)
T KOG2023|consen  365 AFSDWNLRKCSAAALDVLAN--------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLP--E  434 (885)
T ss_pred             ccccccHhhccHHHHHHHHH--------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchH--H
Confidence               02233333333333322        222333    455555556678999999999999999976554444443  3


Q ss_pred             CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 012897          337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILE  416 (454)
Q Consensus       337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~  416 (454)
                      +++.|+.+++++.+-||..++|.|++..+.-.....       ..-|...      ++.|.+..-+.|.+||+.|.....
T Consensus       435 Lip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~-------~~~f~pv------L~~ll~~llD~NK~VQEAAcsAfA  501 (885)
T KOG2023|consen  435 LIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSR-------DEYFKPV------LEGLLRRLLDSNKKVQEAACSAFA  501 (885)
T ss_pred             HHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCCh-------HhhhHHH------HHHHHHHHhcccHHHHHHHHHHHH
Confidence            789999999999999999999999999775544321       1112333      334455566788999999999888


Q ss_pred             HhcCcC
Q 012897          417 TYWLEE  422 (454)
Q Consensus       417 ~~~~~~  422 (454)
                      ++-++.
T Consensus       502 tleE~A  507 (885)
T KOG2023|consen  502 TLEEEA  507 (885)
T ss_pred             HHHHhc
Confidence            775433

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.59  E-value=2.6e-13  Score=117.01  Aligned_cols=239  Identities=19%  Similarity=0.199  Sum_probs=184.8

Q ss_pred             hhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccc
Q 012897          164 VRPALPALAQLVHS-NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ  242 (454)
Q Consensus       164 ~~~~l~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  242 (454)
                      ..+-++.++.+|+. .|+.+++.++.++++.+.. +.....+.+.|+++.+..++.++++.++..|++++.|++...+..
T Consensus        10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~   88 (254)
T PF04826_consen   10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ   88 (254)
T ss_pred             CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence            35677899999984 6899999999999998765 455677888999999999999999999999999999999765433


Q ss_pred             hhhhhccCChHHHHHhh-cCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhc
Q 012897          243 TQCIITYGALPYLLGLL-THSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT  321 (454)
Q Consensus       243 ~~~~~~~~~l~~L~~~L-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  321 (454)
                       . .++ ..++.+.+.. ..+.+..++..+..+|.|++..+..  ..++ .+.++.++.++..++..+|..++++|.|++
T Consensus        89 -~-~Ik-~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS  162 (254)
T PF04826_consen   89 -E-QIK-MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHML-ANYIPDLLSLLSSGSEKTKVQVLKVLVNLS  162 (254)
T ss_pred             -H-HHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhH-HhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence             2 233 2455555543 3333678999999999999864322  2333 347999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHcCCcHHHhhccCCC-CHHHHHHHHHHHHHHHHhhhhhh-hccCCcccccHHHHHHHHhc-cHHHHHH
Q 012897          322 SGGTHEQIKYLVREGCIKPLCDLFVCP-DPRIVTVCLEGLENILKVGEAEK-NMGTATADVNQYAQLVEEAE-GLEKIEN  398 (454)
Q Consensus       322 ~~~~~~~~~~l~~~~~i~~L~~~l~~~-~~~v~~~al~~L~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~g-~~~~l~~  398 (454)
                      .  ++.....++..+++..++.+++.. +.++...++..+.|+-+.-.+.. ...++.+..+.....|.+.+ .-++|..
T Consensus       163 ~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~  240 (254)
T PF04826_consen  163 E--NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQA  240 (254)
T ss_pred             c--CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHH
Confidence            8  678888999999999999999976 56788889999999965433321 11111114444567788777 6788999


Q ss_pred             HhcCCCHHHHHHH
Q 012897          399 LQSHDNNEIYEKA  411 (454)
Q Consensus       399 l~~~~~~~v~~~a  411 (454)
                      +.+|++++|+.++
T Consensus       241 l~~h~d~ev~~~v  253 (254)
T PF04826_consen  241 LANHPDPEVKEQV  253 (254)
T ss_pred             HHcCCCHHHhhhc
Confidence            9999999999875

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.58  E-value=2.9e-13  Score=116.77  Aligned_cols=197  Identities=20%  Similarity=0.239  Sum_probs=163.2

Q ss_pred             HHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 012897           36 IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR  115 (454)
Q Consensus        36 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  115 (454)
                      .+.+-++.|+.+|+...+|.+++.++.++++.+. .+..++.+.+.|+++.+..++.++++.++..|++++.|++...+ 
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e-   86 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE-   86 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh-
Confidence            4556689999999987669999999999999887 88999999999999999999999999999999999999986554 


Q ss_pred             hHHHHHhcCChHHHHHHhch-hhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 012897          116 CRDLVLSQGALIPLLAQLNE-RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS  194 (454)
Q Consensus       116 ~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~  194 (454)
                      .+..+..  .++.+++.... .-+..++..++.+|.+|+.....  .......+|.++.+|.+++..++.+++++|.|++
T Consensus        87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS  162 (254)
T PF04826_consen   87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS  162 (254)
T ss_pred             hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence            4444332  46666665433 34788999999999999876433  2234568999999999999999999999999999


Q ss_pred             cCChHHHHHHHHhCcHHHHHHhcCCC-CCcchhhHHHHHhHhhccC
Q 012897          195 DGTNDKIQAVIEAGVCPRLVELLGHP-SPSVLIPALRTVGNIVTGD  239 (454)
Q Consensus       195 ~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~  239 (454)
                      .+.. ....++..+++..++.++... +.++...++..+.|+..+-
T Consensus       163 ~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~  207 (254)
T PF04826_consen  163 ENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENI  207 (254)
T ss_pred             cCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence            8755 457788889999999999775 6788999999999997643

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.51  E-value=3.4e-12  Score=126.06  Aligned_cols=321  Identities=19%  Similarity=0.205  Sum_probs=206.9

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      ++.+.++|...+.-+.-++..+....  +..-.+    +++.+.+-|.+++ +.++..|++++++++.  ++....    
T Consensus        48 i~l~~s~~~~~Krl~yl~l~~~~~~~--~~~~~l----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~~~----  114 (526)
T PF01602_consen   48 IKLISSKDLELKRLGYLYLSLYLHED--PELLIL----IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMAEP----  114 (526)
T ss_dssp             HCTCSSSSHHHHHHHHHHHHHHTTTS--HHHHHH----HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHHHH----
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHhhcc--hhHHHH----HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchhhH----
Confidence            46677888999988888888887663  222222    4677888888888 8999999999999884  555444    


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF  161 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  161 (454)
                       +++.+.+++.++++.+|..|+.++.++....|..-   ... .++.+.+++ .+.++.++..|+.++..+ ...+....
T Consensus       115 -l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~---~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~~~~~~~  187 (526)
T PF01602_consen  115 -LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLV---EDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KCNDDSYK  187 (526)
T ss_dssp             -HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCH---HGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HCTHHHHT
T ss_pred             -HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHH---HHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-ccCcchhh
Confidence             36888888999999999999999999986555421   111 377788888 778899999999999998 22111111


Q ss_pred             hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCcc
Q 012897          162 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF  241 (454)
Q Consensus       162 ~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  241 (454)
                      ......++.+.+++...++..+..++..+..++...+.....   ..+++.+..++.+.++.+...++.++..+..... 
T Consensus       188 ~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-  263 (526)
T PF01602_consen  188 SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-  263 (526)
T ss_dssp             THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-
T ss_pred             hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-
Confidence            344566667777778888999999999998888765544311   3456666666666677777777777776654222 


Q ss_pred             chhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhh-hcchhhHHHHHHHHHHh
Q 012897          242 QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQ-NAEFDIKKEAAWAISNA  320 (454)
Q Consensus       242 ~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l  320 (454)
                           .-..+++.+..++.++ ++.+|..++..|..++...+...    .  .....+..+. +++..+|..++..|..+
T Consensus       264 -----~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~v----~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l  331 (526)
T PF01602_consen  264 -----LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPAV----F--NQSLILFFLLYDDDPSIRKKALDLLYKL  331 (526)
T ss_dssp             -----HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHHH----G--THHHHHHHHHCSSSHHHHHHHHHHHHHH
T ss_pred             -----HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchhh----h--hhhhhhheecCCCChhHHHHHHHHHhhc
Confidence                 1224566777777766 77777777777777776442221    1  1222223333 55667777777777777


Q ss_pred             cCCCCHHHHHHHHHcCCcHHHhhcc-CCCCHHHHHHHHHHHHHHHHh
Q 012897          321 TSGGTHEQIKYLVREGCIKPLCDLF-VCPDPRIVTVCLEGLENILKV  366 (454)
Q Consensus       321 ~~~~~~~~~~~l~~~~~i~~L~~~l-~~~~~~v~~~al~~L~~l~~~  366 (454)
                      +..   .....     +++.|...+ +..+++++..++..+..+...
T Consensus       332 ~~~---~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~  370 (526)
T PF01602_consen  332 ANE---SNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEK  370 (526)
T ss_dssp             --H---HHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHH
T ss_pred             ccc---cchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhc
Confidence            642   22222     344555555 333555555555555555443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.48  E-value=1.3e-12  Score=101.47  Aligned_cols=119  Identities=36%  Similarity=0.614  Sum_probs=110.2

Q ss_pred             HHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 012897           34 EVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS  113 (454)
Q Consensus        34 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  113 (454)
                      .+++.|+++.+++++.+++ +.++..++++|.+++..+++....+.+.|+++.+++++.++++.++..++++|++++...
T Consensus         2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            3678899999999999998 899999999999999977999999999999999999999999999999999999999888


Q ss_pred             hhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcC
Q 012897          114 PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  154 (454)
Q Consensus       114 ~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  154 (454)
                      +..+..+...|.++.+++.+ .+.+.+++..++++|.+++.
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence            77788888899999999999 66688999999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.48  E-value=3.6e-11  Score=112.04  Aligned_cols=361  Identities=17%  Similarity=0.155  Sum_probs=238.9

Q ss_pred             HHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHh
Q 012897           45 VEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVLS  122 (454)
Q Consensus        45 ~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  122 (454)
                      +.-+.+.+ |+..-.|..-..|.+.+.+.....+++.|.++.++.+++.  +.++.....+.++..+..........+.+
T Consensus        15 l~~L~~~d-pe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~   93 (678)
T KOG1293|consen   15 LYRLLHLD-PEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLR   93 (678)
T ss_pred             HHhhhcCC-HHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHH
Confidence            33445556 6777788888888888888888899999999999999986  45677766777777777665566777888


Q ss_pred             cCChHHHHHHhchhhh-hhHHHHHHHHHHhhcCCCCCCCh---hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 012897          123 QGALIPLLAQLNERAK-LSMLRNATWTLSNFCRGKPQPPF---DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN  198 (454)
Q Consensus       123 ~~~i~~l~~~l~~~~~-~~~~~~a~~~L~~l~~~~~~~~~---~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~  198 (454)
                      ...++.+++++ .+++ ..++...+.++..+....+....   .....+++.+..++..+...+...-+....+++... 
T Consensus        94 ~~~ll~Ll~LL-s~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~-  171 (678)
T KOG1293|consen   94 IIELLKLLQLL-SESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK-  171 (678)
T ss_pred             HhhHHHHHHHh-cCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc-
Confidence            88899999999 5555 88999999999999887643333   233556666666665455555555555555555444 


Q ss_pred             HHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHh---HhhccCccchhhhh----ccCCh-------------------
Q 012897          199 DKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG---NIVTGDDFQTQCII----TYGAL-------------------  252 (454)
Q Consensus       199 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~---~l~~~~~~~~~~~~----~~~~l-------------------  252 (454)
                      .....+.+.++.+.+.-++..-+..+|.+|+.+++   ++...++.....+.    +.++.                   
T Consensus       172 ~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~  251 (678)
T KOG1293|consen  172 DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLR  251 (678)
T ss_pred             hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHH
Confidence            33345566666666666665555556666666666   44333321111110    00000                   


Q ss_pred             ----------------------------------------------------------------------------HHHH
Q 012897          253 ----------------------------------------------------------------------------PYLL  256 (454)
Q Consensus       253 ----------------------------------------------------------------------------~~L~  256 (454)
                                                                                                  +...
T Consensus       252 sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~  331 (678)
T KOG1293|consen  252 SLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTT  331 (678)
T ss_pred             HHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHH
Confidence                                                                                        0000


Q ss_pred             HhhcC---------------------------------------------------CcchhHHHHHHHHHHHHhcCCHHH
Q 012897          257 GLLTH---------------------------------------------------SHKKSIKKEACWTISNITAGNRDQ  285 (454)
Q Consensus       257 ~~L~~---------------------------------------------------~~~~~v~~~a~~~L~nl~~~~~~~  285 (454)
                      +++..                                                   ..+..++..|+.++.++++.-...
T Consensus       332 ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL  411 (678)
T KOG1293|consen  332 ELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSAL  411 (678)
T ss_pred             HHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            00000                                                   002233344444444444321111


Q ss_pred             HHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 012897          286 IQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILK  365 (454)
Q Consensus       286 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~  365 (454)
                      ...+-...++.+|++++..++..++..+..+|+|+.-.-. .....++..|+++.+.+++.+.++.++..++|+|++++-
T Consensus       412 ~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f  490 (678)
T KOG1293|consen  412 RTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMF  490 (678)
T ss_pred             HcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            1112245678899999999999999999999999977533 445778899999999999999999999999999999986


Q ss_pred             hhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Q 012897          366 VGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLE  421 (454)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  421 (454)
                      .++...+            ..+-.-=+...|..+.++++..|++.+-.+++++...
T Consensus       491 ~~de~~k------------~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  491 NCDEEEK------------FQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             cchHHHH------------HHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence            6554432            2222222245677889999999999999999987755

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.47  E-value=2.6e-11  Score=119.82  Aligned_cols=348  Identities=19%  Similarity=0.225  Sum_probs=247.1

Q ss_pred             CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHH
Q 012897            9 DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV   88 (454)
Q Consensus         9 d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~   88 (454)
                      +..-+..+++.+..+...+ .+.      .-+.+.+++++.+.+ ...+..+...+..+...+++....     +++.+.
T Consensus        19 ~~~~~~~~l~kli~~~~~G-~~~------~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~~~~~l-----~~n~l~   85 (526)
T PF01602_consen   19 DISKKKEALKKLIYLMMLG-YDI------SFLFMEVIKLISSKD-LELKRLGYLYLSLYLHEDPELLIL-----IINSLQ   85 (526)
T ss_dssp             HHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCSSSS-HHHHHHHHHHHHHHTTTSHHHHHH-----HHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcC-CCC------chHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhcchhHHHH-----HHHHHH
Confidence            6777787887777765553 211      146788899999877 899999998999988866663322     478888


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchH
Q 012897           89 KLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPAL  168 (454)
Q Consensus        89 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l  168 (454)
                      +-|.++++.+|..|++++++++  .++....     .++.+.+++ .++++.||+.|+.++..+....+.  ..... ++
T Consensus        86 kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p~--~~~~~-~~  154 (526)
T PF01602_consen   86 KDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLL-SDPSPYVRKKAALALLKIYRKDPD--LVEDE-LI  154 (526)
T ss_dssp             HHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCHC--CHHGG-HH
T ss_pred             HhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHh-cCCchHHHHHHHHHHHHHhccCHH--HHHHH-HH
Confidence            8899999999999999999996  3333333     366777777 788899999999999999876432  11112 68


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhc
Q 012897          169 PALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT  248 (454)
Q Consensus       169 ~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  248 (454)
                      +.+..++.+.++.++..|+.++..+ ...+.....+. ..++..+.+++...++-.+..+++++..++...+.....   
T Consensus       155 ~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---  229 (526)
T PF01602_consen  155 PKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---  229 (526)
T ss_dssp             HHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---
T ss_pred             HHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---
Confidence            9999999999999999999999999 33332211122 245666777778888999999999999988755533311   


Q ss_pred             cCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHH
Q 012897          249 YGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQ  328 (454)
Q Consensus       249 ~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~  328 (454)
                      ..+++.+..++.+. ++.+..+++.++..+....+      .-..+++.|..++.++++.++..++.+|..++... +..
T Consensus       230 ~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~-~~~  301 (526)
T PF01602_consen  230 NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN-PPA  301 (526)
T ss_dssp             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC-HHH
T ss_pred             HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc-chh
Confidence            35778899999888 99999999999998875432      12346888999999999999999999999998864 221


Q ss_pred             HHHHHHcCCcHHHhhccC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHh-cCCCHH
Q 012897          329 IKYLVREGCIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ-SHDNNE  406 (454)
Q Consensus       329 ~~~l~~~~~i~~L~~~l~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~-~~~~~~  406 (454)
                         +.   ........+. ++++.++..++..|..+.....              +...      ++.|.... +..+++
T Consensus       302 ---v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n--------------~~~I------l~eL~~~l~~~~d~~  355 (526)
T PF01602_consen  302 ---VF---NQSLILFFLLYDDDPSIRKKALDLLYKLANESN--------------VKEI------LDELLKYLSELSDPD  355 (526)
T ss_dssp             ---HG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHH--------------HHHH------HHHHHHHHHHC--HH
T ss_pred             ---hh---hhhhhhheecCCCChhHHHHHHHHHhhcccccc--------------hhhH------HHHHHHHHHhccchh
Confidence               11   2223333444 7889999999999999985432              2222      33344444 454666


Q ss_pred             HHHHHHHHHHHhc
Q 012897          407 IYEKAVKILETYW  419 (454)
Q Consensus       407 v~~~a~~~l~~~~  419 (454)
                      ++..+...+..+.
T Consensus       356 ~~~~~i~~I~~la  368 (526)
T PF01602_consen  356 FRRELIKAIGDLA  368 (526)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHH
Confidence            7666666555433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PTZ00429 beta-adaptin; Provisional

Probab=99.47  E-value=1.5e-10  Score=114.62  Aligned_cols=365  Identities=14%  Similarity=0.103  Sum_probs=209.5

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      ++++.++|.+++.-....+.+.+... ++.. .+    .++.|.+-+++++ |.+|..|+++++++-.  ++....    
T Consensus        74 vk~~~S~d~elKKLvYLYL~~ya~~~-pela-lL----aINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e~----  140 (746)
T PTZ00429         74 VKLAPSTDLELKKLVYLYVLSTARLQ-PEKA-LL----AVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLEY----  140 (746)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHcccC-hHHH-HH----HHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHHH----
Confidence            34556666666666666666665442 1111 11    3566677777777 7888888877777664  333222    


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF  161 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  161 (454)
                       +++.+.+.+.+.++-||..|+.++.++....+.   .+...+.++.+.+++ .+.++.|..+|+.+|..+....+. ..
T Consensus       141 -l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~~~-~l  214 (746)
T PTZ00429        141 -TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYGSE-KI  214 (746)
T ss_pred             -HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhCch-hh
Confidence             356667777788888888888888888655442   333445667777776 677888888888888888765432 23


Q ss_pred             hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc-
Q 012897          162 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD-  240 (454)
Q Consensus       162 ~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-  240 (454)
                      ......+..++..+..-++..+...+.+|....-......     ..++..+...|++.++.|...|++++.++....+ 
T Consensus       215 ~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~  289 (746)
T PTZ00429        215 ESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQ  289 (746)
T ss_pred             HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCH
Confidence            3445566666677766677777777777765432222111     2567778888899999999999999998875432 


Q ss_pred             cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHH-------------------------h-C--
Q 012897          241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI-------------------------D-A--  292 (454)
Q Consensus       241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-------------------------~-~--  292 (454)
                      .....+. ..+...++.++ +. ++.++..++..+.-+....+.....-+                         + .  
T Consensus       290 ~~~~~~~-~rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv  366 (746)
T PTZ00429        290 ELIERCT-VRVNTALLTLS-RR-DAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVA  366 (746)
T ss_pred             HHHHHHH-HHHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccH
Confidence            1111111 01223444443 44 566777777666555443332211100                         0 0  


Q ss_pred             -CChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhh
Q 012897          293 -GLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEK  371 (454)
Q Consensus       293 -~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~  371 (454)
                       .++..|.+...+.+.+++..+..+++.++..-+ ..     ...++..|+++++.+.. +...++..+.++++..++  
T Consensus       367 ~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~-~~-----a~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~--  437 (746)
T PTZ00429        367 PEILKELAEYASGVDMVFVVEVVRAIASLAIKVD-SV-----APDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPE--  437 (746)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh-HH-----HHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCcc--
Confidence             122333333334456666667777766665322 11     12356666666654433 333456666666553221  


Q ss_pred             hccCCcccccHHHHHHHHhccHHHHHHH---hcCCCHHHHHHHHHHHHHhcC
Q 012897          372 NMGTATADVNQYAQLVEEAEGLEKIENL---QSHDNNEIYEKAVKILETYWL  420 (454)
Q Consensus       372 ~~~~~~~~~~~~~~~l~~~g~~~~l~~l---~~~~~~~v~~~a~~~l~~~~~  420 (454)
                                .+        .+..|...   ..-.+++.+....|++..|-+
T Consensus       438 ----------~~--------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~  471 (746)
T PTZ00429        438 ----------LL--------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCD  471 (746)
T ss_pred             ----------HH--------HHHHHHHhhcccccccHHHHHHHHHHHHhhHh
Confidence                      01        12223221   233556677777888888754

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.47  E-value=9.1e-11  Score=107.95  Aligned_cols=322  Identities=15%  Similarity=0.182  Sum_probs=228.7

Q ss_pred             CChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhc-----CChHHHHHHhchhhhhhHHHHHHHHHHhhcCC
Q 012897           82 GAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQ-----GALIPLLAQLNERAKLSMLRNATWTLSNFCRG  155 (454)
Q Consensus        82 g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  155 (454)
                      .++..++.++.. ..+++.+..+..+..+....+.....+.+.     +...+++.++ ..++.-+...++.++..+...
T Consensus        53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL-~~~d~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLL-NRQDQFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHH-cCCchhHHHHHHHHHHHHHhc
Confidence            467778888876 668899999999999988777655555443     4677888888 566888999999999999876


Q ss_pred             CCCCCh-hhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC--CCcchhhHHHH
Q 012897          156 KPQPPF-DQVRPALPALAQLVHSN-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP--SPSVLIPALRT  231 (454)
Q Consensus       156 ~~~~~~-~~~~~~l~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~  231 (454)
                      .+.... .....+++.+...+.+. +...+.-++.++..+......+ ..+.+.++++.|+.+|+..  ..+++..++.|
T Consensus       132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~  210 (429)
T cd00256         132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR-FAFVLADGVPTLVKLLSNATLGFQLQYQSIFC  210 (429)
T ss_pred             CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH-HHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence            532211 12223445556666654 4667778889999998776654 5677788999999999763  45788999999


Q ss_pred             HhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCC------HHHHHHHHhCCChHHHHHHhhhc
Q 012897          232 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN------RDQIQAVIDAGLVGPLVNLLQNA  305 (454)
Q Consensus       232 L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~------~~~~~~l~~~~~i~~L~~ll~~~  305 (454)
                      ++-++...+ ........++++.++.+++.....++-+-++.++.|+...+      ......+++.|+.+.+-.+-..+
T Consensus       211 lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk  289 (429)
T cd00256         211 IWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRK  289 (429)
T ss_pred             HHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCC
Confidence            999997554 44555667999999999988768889999999999999732      22334556666665444443332


Q ss_pred             --chhhHHHHHHH-------HHHhcCCC------------------C----HHHHHHHHHcC--CcHHHhhccC-CCCHH
Q 012897          306 --EFDIKKEAAWA-------ISNATSGG------------------T----HEQIKYLVREG--CIKPLCDLFV-CPDPR  351 (454)
Q Consensus       306 --~~~v~~~a~~a-------L~~l~~~~------------------~----~~~~~~l~~~~--~i~~L~~~l~-~~~~~  351 (454)
                        |+++....-..       +..++...                  +    .++...+.+++  +++.|+++++ +.|+.
T Consensus       290 ~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~  369 (429)
T cd00256         290 YDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI  369 (429)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc
Confidence              55544222111       11111100                  1    12334444443  4788999985 56788


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 012897          352 IVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW  419 (454)
Q Consensus       352 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~  419 (454)
                      +...||.=++.+++..+.             .+..+.+.|+-+.+.++++|+|++|+..|...++.++
T Consensus       370 ~laVAc~Dige~vr~~P~-------------gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  424 (429)
T cd00256         370 ILAVACHDIGEYVRHYPR-------------GKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM  424 (429)
T ss_pred             eeehhhhhHHHHHHHCcc-------------HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            888899999999987544             3667889999999999999999999999999998775

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PTZ00429 beta-adaptin; Provisional

Probab=99.46  E-value=4.3e-10  Score=111.47  Aligned_cols=287  Identities=15%  Similarity=0.102  Sum_probs=201.5

Q ss_pred             ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 012897            3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG   82 (454)
Q Consensus         3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g   82 (454)
                      +.|++.+...+..|++.+...+... .+..      .+++.+++++.+++ ..++......+.+++...++..-.     
T Consensus        39 ~~L~s~~~~~kk~alKkvIa~mt~G-~DvS------~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pelalL-----  105 (746)
T PTZ00429         39 NDLNGTDSYRKKAAVKRIIANMTMG-RDVS------YLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKALL-----  105 (746)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHCC-CCch------HHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHHHH-----
Confidence            4567788888888988877776554 2322      24667888999888 899999999999998855554322     


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChh
Q 012897           83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD  162 (454)
Q Consensus        83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  162 (454)
                      .++.+.+=+.++++.+|..|+++++.+..  +...+.     .+..+.+.+ .+.++.||+.|+.++..+....+  ...
T Consensus       106 aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L-~D~~pYVRKtAalai~Kly~~~p--elv  175 (746)
T PTZ00429        106 AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAV-ADPDPYVRKTAAMGLGKLFHDDM--QLF  175 (746)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhCc--ccc
Confidence            47888888899999999999999999842  222222     255666677 78899999999999999987644  233


Q ss_pred             hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccc
Q 012897          163 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ  242 (454)
Q Consensus       163 ~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  242 (454)
                      ...++++.+..++.+.++.|+.+|+.+|..+....+....  ...+.+..++..+..-++-.+...+.+|....   +..
T Consensus       176 ~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~---P~~  250 (746)
T PTZ00429        176 YQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQR---PSD  250 (746)
T ss_pred             cccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC---CCC
Confidence            3457888899999999999999999999999876554322  23355677777777666666667777775432   222


Q ss_pred             hhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcC-CHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhc
Q 012897          243 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT  321 (454)
Q Consensus       243 ~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  321 (454)
                      ....  ..++..+...|++. ++.|.-+|+.++.++... .++....+. ..+-+.++.+ .+++++++..++..|..++
T Consensus       251 ~~e~--~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~  325 (746)
T PTZ00429        251 KESA--ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCT-VRVNTALLTL-SRRDAETQYIVCKNIHALL  325 (746)
T ss_pred             cHHH--HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHH-HHHHHHHHHh-hCCCccHHHHHHHHHHHHH
Confidence            1111  25678888889998 899999999999988753 233332222 1223445555 3456677777776665555


Q ss_pred             C
Q 012897          322 S  322 (454)
Q Consensus       322 ~  322 (454)
                      .
T Consensus       326 ~  326 (746)
T PTZ00429        326 V  326 (746)
T ss_pred             H
Confidence            4

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=4.7e-11  Score=114.01  Aligned_cols=260  Identities=18%  Similarity=0.170  Sum_probs=207.3

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHhcC-CCchhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHH
Q 012897           41 VPRFVEFLMREDYPQLQFEAAWALTNIAS-GTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRD  118 (454)
Q Consensus        41 l~~L~~lL~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~  118 (454)
                      +..|++-|+...++..+.+|+.-|+.+.. ++++....+--..++|.|+.+|++ .+.++.-.|+++|.++|...|....
T Consensus       169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a  248 (1051)
T KOG0168|consen  169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA  248 (1051)
T ss_pred             HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence            55666667766348888888877777554 666666666556789999999997 5699999999999999988888888


Q ss_pred             HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC-
Q 012897          119 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT-  197 (454)
Q Consensus       119 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~-  197 (454)
                      .+++.+.++.++..|..-.-.++.++++.+|..+++..  .......|.+...+.+|+--...+++.|+.+..|+|..- 
T Consensus       249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~  326 (1051)
T KOG0168|consen  249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR  326 (1051)
T ss_pred             eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            89999999999999877778899999999999999874  445556788889999998888899999999999999652 


Q ss_pred             hHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccC---ccchhhhhccCChHHHHHhhcCCc---chhHHHHH
Q 012897          198 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD---DFQTQCIITYGALPYLLGLLTHSH---KKSIKKEA  271 (454)
Q Consensus       198 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~~~l~~L~~~L~~~~---~~~v~~~a  271 (454)
                      ++....++  +.+|.|..+|++.+....+.++.|+..++...   +...+.+...+.+....+++.-.+   +..+....
T Consensus       327 sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~v  404 (1051)
T KOG0168|consen  327 SDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGV  404 (1051)
T ss_pred             CccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHH
Confidence            23334444  57999999999999999999999999998754   344556777888888888886441   23455667


Q ss_pred             HHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhh
Q 012897          272 CWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN  304 (454)
Q Consensus       272 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~  304 (454)
                      ...+..++++++.....+.+.++...|..++..
T Consensus       405 Irmls~msS~~pl~~~tl~k~~I~~~L~~il~g  437 (1051)
T KOG0168|consen  405 IRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG  437 (1051)
T ss_pred             HHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence            778888888888888888888888888877753

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.42  E-value=2.4e-12  Score=100.02  Aligned_cols=118  Identities=37%  Similarity=0.535  Sum_probs=109.0

Q ss_pred             HHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCH
Q 012897          204 VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNR  283 (454)
Q Consensus       204 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~  283 (454)
                      +.+.|+++.++.++.++++.++..++++|++++...+.....+.+.++++.++++|.++ ++.++..++|+|+|++...+
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence            56779999999999999999999999999999998777888888889999999999998 99999999999999999877


Q ss_pred             HHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897          284 DQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS  322 (454)
Q Consensus       284 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  322 (454)
                      .....+.+.|+++.+++++...+..+++.++++|.+++.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            777778889999999999999999999999999999863

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.42  E-value=8e-11  Score=108.32  Aligned_cols=313  Identities=12%  Similarity=0.078  Sum_probs=217.7

Q ss_pred             CCCHHHHHHHHHHHHHHhccCCCCcHHHHHH-----cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            7 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQ-----SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         7 s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      ..++++....+..+..++... +.....+.+     ......++.+|.+++ ..+...|+.+|..+....+.........
T Consensus        65 ~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~~~~~~~~~~l~  142 (429)
T cd00256          65 IDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACFGLAKMEGSDLD  142 (429)
T ss_pred             cCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhcCccccchhHHH
Confidence            355777777777777777764 333444444     356777888998888 8999999999999986443322111111


Q ss_pred             CChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhh-hhhHHHHHHHHHHhhcCCCCCC
Q 012897           82 GAVPIFVKLLASP-SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA-KLSMLRNATWTLSNFCRGKPQP  159 (454)
Q Consensus        82 g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-~~~~~~~a~~~L~~l~~~~~~~  159 (454)
                      -.++.+...++++ +...+..++.++..+.... .+|..+.+.++++.|+.++.... +..++..++.+++-|+.+.+..
T Consensus       143 ~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~-~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~  221 (429)
T cd00256         143 YYFNWLKEQLNNITNNDYVQTAARCLQMLLRVD-EYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAA  221 (429)
T ss_pred             HHHHHHHHHhhccCCcchHHHHHHHHHHHhCCc-hHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHH
Confidence            1345566666654 4777888889999987554 58888888889999999996544 6789999999999999886544


Q ss_pred             ChhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCC------hHHHHHHHHhCcHHHHHHhcCC--CCCcchhh---
Q 012897          160 PFDQVRPALPALAQLVHS-NDEEVLTDACWALSYLSDGT------NDKIQAVIEAGVCPRLVELLGH--PSPSVLIP---  227 (454)
Q Consensus       160 ~~~~~~~~l~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~------~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~---  227 (454)
                      ......++++.++.+++. ..+++.+-++.++.|+....      ......++..++.+.+-.+...  .++++...   
T Consensus       222 ~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~  301 (429)
T cd00256         222 EVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKF  301 (429)
T ss_pred             HhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHH
Confidence            444447899999999975 47889999999999998643      1233446665665544444322  34433221   


Q ss_pred             -------HHHHHhHhh-----------ccCccc-hhhh--------hcc--CChHHHHHhhcCCcchhHHHHHHHHHHHH
Q 012897          228 -------ALRTVGNIV-----------TGDDFQ-TQCI--------ITY--GALPYLLGLLTHSHKKSIKKEACWTISNI  278 (454)
Q Consensus       228 -------a~~~L~~l~-----------~~~~~~-~~~~--------~~~--~~l~~L~~~L~~~~~~~v~~~a~~~L~nl  278 (454)
                             ...-++++-           .-+|.. .+.+        .+.  .+++.|..+|..+.++.+..-||.-++.+
T Consensus       302 L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~  381 (429)
T cd00256         302 LTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEY  381 (429)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHH
Confidence                   112222111           001111 1112        222  35788999996554888889999999999


Q ss_pred             hcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897          279 TAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS  322 (454)
Q Consensus       279 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  322 (454)
                      +...|..+..+-+.|+=..+++++.+++++||.+|+.|+..+..
T Consensus       382 vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  425 (429)
T cd00256         382 VRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV  425 (429)
T ss_pred             HHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            99878877777788999999999999999999999999988754

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.39  E-value=2.1e-11  Score=115.19  Aligned_cols=356  Identities=14%  Similarity=0.093  Sum_probs=230.8

Q ss_pred             cccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCC
Q 012897            4 GVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGA   83 (454)
Q Consensus         4 ~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~   83 (454)
                      .|.+..|...-.|+.++..++..+ -+ ..  ...++++.|+..........+++.++.+++.+|.+-....-.-....+
T Consensus        98 tL~~~ep~~~s~Aaq~va~IA~~E-lP-~n--~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~i  173 (859)
T KOG1241|consen   98 TLGSPEPRRPSSAAQCVAAIACIE-LP-QN--QWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDI  173 (859)
T ss_pred             HcCCCCCCccchHHHHHHHHHHhh-Cc-hh--hCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHH
Confidence            455666666667777777776664 11 11  124567777777777763469999999999999833222111122457


Q ss_pred             hHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCCh-HHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCC-
Q 012897           84 VPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGAL-IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP-  159 (454)
Q Consensus        84 i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i-~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-  159 (454)
                      +..++.-...  ++..+|-.|+.+|.|-......+-..-.+.+.+ +...+. .++++.+++..|..+|..+..-.... 
T Consensus       174 LtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEa-tq~~d~~i~~aa~~ClvkIm~LyY~~m  252 (859)
T KOG1241|consen  174 LTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEA-TQSPDEEIQVAAFQCLVKIMSLYYEFM  252 (859)
T ss_pred             HHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeec-ccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            7778887765  678999999999988653221111111122222 222222 26789999999999999887542111 


Q ss_pred             ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH---------------HHHHH---HhCcHHHHHHhcCC--
Q 012897          160 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDK---------------IQAVI---EAGVCPRLVELLGH--  219 (454)
Q Consensus       160 ~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~---------------~~~~~---~~~~i~~L~~ll~~--  219 (454)
                      ..-+....+..-+..+.+++++|...++..-+++|...-+.               ...+.   -.+++|.|+.+|..  
T Consensus       253 ~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqd  332 (859)
T KOG1241|consen  253 EPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQD  332 (859)
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCC
Confidence            11112335555566677999999999999999888532210               01111   12577888888854  


Q ss_pred             -----CCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCC-HHHHHHHHhCC
Q 012897          220 -----PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN-RDQIQAVIDAG  293 (454)
Q Consensus       220 -----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~  293 (454)
                           .++....+|-.||.-++......   ++. .+++.+-.-++++ +..-|..|+.+++.+..+. +....+++ .+
T Consensus       333 e~~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv~-~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~iV-~q  406 (859)
T KOG1241|consen  333 EDDDDDDWNPAKAAGVCLMLFAQCVGDD---IVP-HVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLTPIV-IQ  406 (859)
T ss_pred             CCcccccCcHHHHHHHHHHHHHHHhccc---chh-hhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhhHHH-hh
Confidence                 23567788888887777543321   222 4555555667788 9999999999999999864 44444444 67


Q ss_pred             ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhh
Q 012897          294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEK  371 (454)
Q Consensus       294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~  371 (454)
                      .+|.++.++.++...++..+.|+++.++................+..++.-++ +.|.+...++|++.++.+...+.-
T Consensus       407 alp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~  483 (859)
T KOG1241|consen  407 ALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAA  483 (859)
T ss_pred             hhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhc
Confidence            99999999998889999999999999998754332222222334445544444 678899999999999997655443

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.28  E-value=5.5e-11  Score=111.93  Aligned_cols=341  Identities=14%  Similarity=0.117  Sum_probs=222.2

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      +.-++++.+..|...+..+.++.........+.-.+...+..++..++.++. +.. ..+..++.++. .-..|-.-.-.
T Consensus       722 v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt-~d~-vml~gfg~V~~-~lg~r~kpylp  798 (1172)
T KOG0213|consen  722 VLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTT-EDS-VMLLGFGTVVN-ALGGRVKPYLP  798 (1172)
T ss_pred             hhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhccc-chh-hhhhhHHHHHH-HHhhccccchH
Confidence            3456788888888888888888776533334444445566667777776652 211 12223333332 00011111112


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH--HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC-CC
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD--LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQ  158 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~  158 (454)
                      .++..++..|+++++.+|.+++..++.++.--..+.+  .+-..|  ..|.+.+ ....+++.-..+.++..++... -.
T Consensus       799 qi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEyl-geeypEvLgsILgAikaI~nvigm~  875 (1172)
T KOG0213|consen  799 QICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYL-GEEYPEVLGSILGAIKAIVNVIGMT  875 (1172)
T ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhc-CcccHHHHHHHHHHHHHHHHhcccc
Confidence            3567788899999999999999999988732222211  111112  2345555 6678899888888888877553 12


Q ss_pred             CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhcc
Q 012897          159 PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG  238 (454)
Q Consensus       159 ~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  238 (454)
                      ....-..+++|.|..+|++...+++.+++..++.++...++....---..+.-.|+.+|...+.++|.+|..+++.++..
T Consensus       876 km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iaka  955 (1172)
T KOG0213|consen  876 KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKA  955 (1172)
T ss_pred             ccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Confidence            22233478999999999999999999999999999988776433222223444577778888889999999999998852


Q ss_pred             CccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHH
Q 012897          239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAIS  318 (454)
Q Consensus       239 ~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~  318 (454)
                             +--..++..|+.-|+.. +.+.|.-...+++-.+..+.    .   -.++|.|+.=...++..|+.-.+.+++
T Consensus       956 -------IGPqdVLatLlnnLkvq-eRq~RvcTtvaIaIVaE~c~----p---FtVLPalmneYrtPe~nVQnGVLkals 1020 (1172)
T KOG0213|consen  956 -------IGPQDVLATLLNNLKVQ-ERQNRVCTTVAIAIVAETCG----P---FTVLPALMNEYRTPEANVQNGVLKALS 1020 (1172)
T ss_pred             -------cCHHHHHHHHHhcchHH-HHHhchhhhhhhhhhhhhcC----c---hhhhHHHHhhccCchhHHHHhHHHHHH
Confidence                   22234566666666655 44444433334443333211    1   246888888777788899999999999


Q ss_pred             HhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 012897          319 NATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILK  365 (454)
Q Consensus       319 ~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~  365 (454)
                      .+...-..-...++..  +.+.|.+.+-+.|+.-++.+..++.++.-
T Consensus      1021 f~FeyigemskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1021 FMFEYIGEMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred             HHHHHHHHHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence            9987654444455444  67778888888888888888888888864

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.27  E-value=1.5e-09  Score=102.95  Aligned_cols=356  Identities=16%  Similarity=0.169  Sum_probs=234.7

Q ss_pred             CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHH
Q 012897            8 DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF   87 (454)
Q Consensus         8 ~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L   87 (454)
                      .+..+|+.|+.+|.+-+...+...-..+-+.-+++..++.-++++ .+++..|+.||.++..-.-+.....+....+..-
T Consensus       186 ~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d-~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfait  264 (859)
T KOG1241|consen  186 TSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPD-EEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAIT  264 (859)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357899999999998765532222334444556778888888888 9999999999999998666666666666777888


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhhCCChh----------------hHH--HHHhcCChHHHHHHhch-hh-----hhhHHH
Q 012897           88 VKLLASPSDDVREQAVWALGNVAGDSPR----------------CRD--LVLSQGALIPLLAQLNE-RA-----KLSMLR  143 (454)
Q Consensus        88 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~----------------~~~--~~~~~~~i~~l~~~l~~-~~-----~~~~~~  143 (454)
                      +..++++++++.-+++...+++|...-.                ...  .-.-.+.+|.|+++|.+ ++     +-..-.
T Consensus       265 l~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~k  344 (859)
T KOG1241|consen  265 LAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAK  344 (859)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHH
Confidence            8888999999999999999999842111                000  01112467778888853 22     112344


Q ss_pred             HHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCc
Q 012897          144 NATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPS  223 (454)
Q Consensus       144 ~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~  223 (454)
                      .|..+|.-++...   .......++|.+-.-++++|..-+..+..+++.+..........-+..+.++.++.++.++.-.
T Consensus       345 AAg~CL~l~A~~~---~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~  421 (859)
T KOG1241|consen  345 AAGVCLMLFAQCV---GDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLW  421 (859)
T ss_pred             HHHHHHHHHHHHh---cccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhh
Confidence            4444444444332   1122346777777888899999999999999999887665545455558999999999998888


Q ss_pred             chhhHHHHHhHhhccCccchh-hhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHH-----HHh---CCC
Q 012897          224 VLIPALRTVGNIVTGDDFQTQ-CIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQA-----VID---AGL  294 (454)
Q Consensus       224 v~~~a~~~L~~l~~~~~~~~~-~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~-----l~~---~~~  294 (454)
                      ++..+.|+++.++.+.++.+. .......+..++.-|. . .|.+-.++||++.+++.+..+....     ...   ..+
T Consensus       422 VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~i  499 (859)
T KOG1241|consen  422 VKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-D-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAI  499 (859)
T ss_pred             hcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-h-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHH
Confidence            999999999999987663321 1122245556666664 3 5788999999999998432221100     000   123


Q ss_pred             hHHHHHHhhh---cchhhHHHHHHHHHHhcCCCCHHHHHHHHHc--CCcHHHhhccC-----CCC----HHHHHHHHHHH
Q 012897          295 VGPLVNLLQN---AEFDIKKEAAWAISNATSGGTHEQIKYLVRE--GCIKPLCDLFV-----CPD----PRIVTVCLEGL  360 (454)
Q Consensus       295 i~~L~~ll~~---~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~--~~i~~L~~~l~-----~~~----~~v~~~al~~L  360 (454)
                      +..|+...+.   .+..+|..|..+|..+..+.+++....+.+.  -.+..|-+.++     ..+    .+++...+.+|
T Consensus       500 i~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~L  579 (859)
T KOG1241|consen  500 IGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTL  579 (859)
T ss_pred             HHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHH
Confidence            4444444433   3678999999999999998776654443321  12233333332     222    24666667777


Q ss_pred             HHHHHhhhh
Q 012897          361 ENILKVGEA  369 (454)
Q Consensus       361 ~~l~~~~~~  369 (454)
                      ..+.++...
T Consensus       580 q~i~rk~~~  588 (859)
T KOG1241|consen  580 QSIIRKVGS  588 (859)
T ss_pred             HHHHHHccc
Confidence            777765443

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.25  E-value=7.5e-09  Score=97.69  Aligned_cols=214  Identities=16%  Similarity=0.183  Sum_probs=155.9

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      +.+|++.-|-+|..|...+.++.-.- ++..+     ..+|.|++-|.+++ |.++..|+.+++.++..+|.+.-.    
T Consensus       150 ~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL~----  218 (877)
T KOG1059|consen  150 FTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYLQ----  218 (877)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCccccc----
Confidence            34577888889999988888876553 22222     25889999999999 999999999999999877766433    


Q ss_pred             CChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC-CCC
Q 012897           82 GAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQP  159 (454)
Q Consensus        82 g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~  159 (454)
                       .-|.+.++|.+ .|.=+....+..+++|+--.|.....     .++++.+++....-..+...+..++..-+... ...
T Consensus       219 -LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d  292 (877)
T KOG1059|consen  219 -LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSD  292 (877)
T ss_pred             -ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCC
Confidence             45778887764 33334445677888887666665555     47888888865555566666655554332111 113


Q ss_pred             ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhc
Q 012897          160 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT  237 (454)
Q Consensus       160 ~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  237 (454)
                      ......-+++.|--++.+.|+.++.-++.+++.+...++...+     ..-+.++.+|.+.++.+|..|+..+-.++.
T Consensus       293 ~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq-----a~kdlIlrcL~DkD~SIRlrALdLl~gmVs  365 (877)
T KOG1059|consen  293 HSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ-----AHKDLILRCLDDKDESIRLRALDLLYGMVS  365 (877)
T ss_pred             cHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH-----HhHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence            3444566788888899999999999999999999988775544     234578899999999999999999888875

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.20  E-value=5.6e-08  Score=92.85  Aligned_cols=325  Identities=16%  Similarity=0.165  Sum_probs=239.5

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCh---
Q 012897           40 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSP---  114 (454)
Q Consensus        40 ~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~---  114 (454)
                      .++.|++-+.+..-.+-|+.|+..|..++.   +.|..+...| ++.|+..|+.  .++++...++.++.++.+..+   
T Consensus        23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~   98 (970)
T KOG0946|consen   23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE   98 (970)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence            588999998887768889999999999987   6777776655 8889998876  679999999999999885442   


Q ss_pred             ---hh----------H-HHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh---hhhhchHHHHHHhhcC
Q 012897          115 ---RC----------R-DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF---DQVRPALPALAQLVHS  177 (454)
Q Consensus       115 ---~~----------~-~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~---~~~~~~l~~l~~ll~~  177 (454)
                         ..          . ..+...+.+..++..+ ...|-.||..++..+.++....+....   .....++..++.+|++
T Consensus        99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D  177 (970)
T KOG0946|consen   99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD  177 (970)
T ss_pred             hcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence               11          1 1234456788888888 778889999999999999887643222   2236788999999999


Q ss_pred             CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC----CCcchhhHHHHHhHhhccCccchhhhhccCChH
Q 012897          178 NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP----SPSVLIPALRTVGNIVTGDDFQTQCIITYGALP  253 (454)
Q Consensus       178 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~  253 (454)
                      ..+.+|..++..|..++..++...+.+.=.+++..|+.++...    ..-|...|+..|-|+...+......+.+.+.++
T Consensus       178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~  257 (970)
T KOG0946|consen  178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP  257 (970)
T ss_pred             hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence            9999999999999999988876655555568999999999653    235788899999999998888888888999999


Q ss_pred             HHHHhhcCCc--c-----hhH-----HHHHHHHHHHHhc-CCH-----HHHHHHHhCCChHHHHHHhhhc--chhhHHHH
Q 012897          254 YLLGLLTHSH--K-----KSI-----KKEACWTISNITA-GNR-----DQIQAVIDAGLVGPLVNLLQNA--EFDIKKEA  313 (454)
Q Consensus       254 ~L~~~L~~~~--~-----~~v-----~~~a~~~L~nl~~-~~~-----~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a  313 (454)
                      .|.++|....  +     +..     ...+..++..+.. +++     .+.+.+...+++..|+.++.++  ..+++..+
T Consensus       258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltes  337 (970)
T KOG0946|consen  258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTES  337 (970)
T ss_pred             HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHH
Confidence            9998885321  1     111     1234455555554 221     2234566789999999999876  56788999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHcC----------CcHHHhhccCCCC-HHHHHHHHHHHHHHHHhhhhh
Q 012897          314 AWAISNATSGGTHEQIKYLVREG----------CIKPLCDLFVCPD-PRIVTVCLEGLENILKVGEAE  370 (454)
Q Consensus       314 ~~aL~~l~~~~~~~~~~~l~~~~----------~i~~L~~~l~~~~-~~v~~~al~~L~~l~~~~~~~  370 (454)
                      ..++.++.+++. .....+.+..          .+-.++.+..+.. +.+|.+++.|+..++......
T Consensus       338 iitvAevVRgn~-~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~g  404 (970)
T KOG0946|consen  338 IITVAEVVRGNA-RNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDG  404 (970)
T ss_pred             HHHHHHHHHhch-HHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhh
Confidence            999999988643 3333444311          1223444555544 578999999999888665543

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=5.5e-09  Score=91.72  Aligned_cols=190  Identities=20%  Similarity=0.232  Sum_probs=158.8

Q ss_pred             CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHH
Q 012897          178 NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLG  257 (454)
Q Consensus       178 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~  257 (454)
                      .+.+-+..++.-|..++.+-+. ...+...|+...++..+.+++..+|..|+++|+.++.+++.....+++.++++.|+.
T Consensus        95 ~~le~ke~ald~Le~lve~iDn-Andl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~  173 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDIDN-ANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK  173 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhh-HHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence            4566778888888888866543 456888899999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhh--cchhhHHHHHHHHHHhcCCCCHHHHHHHHHc
Q 012897          258 LLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN--AEFDIKKEAAWAISNATSGGTHEQIKYLVRE  335 (454)
Q Consensus       258 ~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~  335 (454)
                      ++.+..+..+|..|.++++.+.+..+.....+...++...|.+.+++  .+..++..++..+..++.... .....+...
T Consensus       174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~-s~~d~~~~~  252 (342)
T KOG2160|consen  174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK-SDEDIASSL  252 (342)
T ss_pred             HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh-hhhhHHHHh
Confidence            99987577888999999999999888888888888889999999999  577888999999999988543 233344456


Q ss_pred             CCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhh
Q 012897          336 GCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEA  369 (454)
Q Consensus       336 ~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~  369 (454)
                      ++...+..+..+.+.++...++.++...+.....
T Consensus       253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~  286 (342)
T KOG2160|consen  253 GFQRVLENLISSLDFEVNEAALTALLSLLSELST  286 (342)
T ss_pred             hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhh
Confidence            7777788888888889999888888877765443

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.16  E-value=4.8e-09  Score=93.29  Aligned_cols=274  Identities=16%  Similarity=0.144  Sum_probs=195.8

Q ss_pred             ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 012897            3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG   82 (454)
Q Consensus         3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g   82 (454)
                      ..|..+|+-+...+.+.+.++++... .........-....|-..++++.+++....+++||..+.. .++.|..++..+
T Consensus       121 ~ll~r~d~~iv~~~~~Ils~la~~g~-~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~ad  198 (442)
T KOG2759|consen  121 NLLNRQDTFIVEMSFRILSKLACFGN-CKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIAD  198 (442)
T ss_pred             HHHhcCChHHHHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecC
Confidence            45677888888889999999887652 2111100011233455666664447888889999999998 789999999999


Q ss_pred             ChHHHHHhhC-C-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897           83 AVPIFVKLLA-S-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP  160 (454)
Q Consensus        83 ~i~~L~~lL~-~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (454)
                      ++..++..+. + .+..++-+.+.+++-|+.. |...+.+...+.++.|..++..+..+.|.+-++.++.|++...+...
T Consensus       199 g~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~  277 (442)
T KOG2759|consen  199 GVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-PHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRE  277 (442)
T ss_pred             cchhhHHHHhccCcchhHHHHHHHHHHHhhcC-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhh
Confidence            9999999883 3 6789999999999999654 44556777888999999999888899999999999999998764322


Q ss_pred             h------hhhhchHHHHHHhhcC---CChhHHHHHHHHHHH-------hccC--------------Ch---------HHH
Q 012897          161 F------DQVRPALPALAQLVHS---NDEEVLTDACWALSY-------LSDG--------------TN---------DKI  201 (454)
Q Consensus       161 ~------~~~~~~l~~l~~ll~~---~~~~v~~~a~~~L~~-------l~~~--------------~~---------~~~  201 (454)
                      .      .+...-++..++.|..   +|+++....-..-..       ++..              +|         ++.
T Consensus       278 ~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa  357 (442)
T KOG2759|consen  278 TKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENA  357 (442)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhH
Confidence            2      1223333444444442   355543332222111       1110              00         111


Q ss_pred             HHHHH--hCcHHHHHHhcCCC-CCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHH
Q 012897          202 QAVIE--AGVCPRLVELLGHP-SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI  278 (454)
Q Consensus       202 ~~~~~--~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl  278 (454)
                      ..+-+  ..++..|+.+|..+ +|.+..-||.=++.+++..|..+..+.+.|+=..++++|.++ +++||.+|..++..+
T Consensus       358 ~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALlavQ~l  436 (442)
T KOG2759|consen  358 DRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALLAVQKL  436 (442)
T ss_pred             HHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHHHHHHH
Confidence            11222  14788899999765 588899999999999999998888888899999999999999 999999999998877


Q ss_pred             hc
Q 012897          279 TA  280 (454)
Q Consensus       279 ~~  280 (454)
                      ..
T Consensus       437 m~  438 (442)
T KOG2759|consen  437 MV  438 (442)
T ss_pred             Hh
Confidence            64

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=6.2e-09  Score=91.40  Aligned_cols=187  Identities=21%  Similarity=0.227  Sum_probs=158.7

Q ss_pred             cCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChH
Q 012897            6 WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVP   85 (454)
Q Consensus         6 ~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~   85 (454)
                      .+.+++-+..|+..|..++..  .++...++..|++..++..+++++ +.+|..|+++++.++..+|.....+++.|+.+
T Consensus        93 ~s~~le~ke~ald~Le~lve~--iDnAndl~~~ggl~~ll~~l~~~~-~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~  169 (342)
T KOG2160|consen   93 SSVDLEDKEDALDNLEELVED--IDNANDLISLGGLVPLLGYLENSD-AELRELAARVIGTAVQNNPKSQEQVIELGALS  169 (342)
T ss_pred             ccCCHHHHHHHHHHHHHHHHh--hhhHHhHhhccCHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence            456788899999999999977  788899999999999999999999 99999999999999999999999999999999


Q ss_pred             HHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchh-hhhhHHHHHHHHHHhhcCCCCCCC-hh
Q 012897           86 IFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER-AKLSMLRNATWTLSNFCRGKPQPP-FD  162 (454)
Q Consensus        86 ~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~-~~  162 (454)
                      .|+..+.+ .+..++..|+.+++.+.+..+.....+...+++..|...+... .+...++.++..+..+........ ..
T Consensus       170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~  249 (342)
T KOG2160|consen  170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA  249 (342)
T ss_pred             HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            99999986 5577889999999999999888888888888899999999542 678899999999999998763333 33


Q ss_pred             hhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 012897          163 QVRPALPALAQLVHSNDEEVLTDACWALSYLSD  195 (454)
Q Consensus       163 ~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~  195 (454)
                      ...++...+..+....+.++...++.++..+..
T Consensus       250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  250 SSLGFQRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            334555566777777788888888887766553

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.13  E-value=1.1e-08  Score=91.00  Aligned_cols=309  Identities=14%  Similarity=0.092  Sum_probs=210.2

Q ss_pred             HHHHHHHHHHHHHHhccCCCCcHHHH-------HHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 012897           10 SSLQLEATTQFRKLLSIERSPPIEEV-------IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG   82 (454)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~~~~~~~~-------~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g   82 (454)
                      ++.....+..+-.+++..  ......       .....-...+.+|.+.+ .-+...+.+++..++.........-...=
T Consensus        80 dd~v~yvL~li~DmLs~d--~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d-~~iv~~~~~Ils~la~~g~~~~~~~e~~~  156 (442)
T KOG2759|consen   80 DDTVQYVLTLIDDMLSED--RSRVDLFHDYAHKLKRTEWLSFLNLLNRQD-TFIVEMSFRILSKLACFGNCKMELSELDV  156 (442)
T ss_pred             HHHHHHHHHHHHHHHhhC--chHHHHHHHHHHhhhccchHHHHHHHhcCC-hHHHHHHHHHHHHHHHhccccccchHHHH
Confidence            455555555666666553  111111       11233567788888888 78888899999998873222111100001


Q ss_pred             ChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHh-chhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897           83 AVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQL-NERAKLSMLRNATWTLSNFCRGKPQPP  160 (454)
Q Consensus        83 ~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l-~~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (454)
                      ....|...+++ .+......++++|..+.... ++|..+...+++..++..+ ....+-.++.+.+.+++.|+.++....
T Consensus       157 ~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~-eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae  235 (442)
T KOG2759|consen  157 YKGFLKEQLQSSTNNDYIQFAARCLQTLLRVD-EYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAE  235 (442)
T ss_pred             HHHHHHHHHhccCCCchHHHHHHHHHHHhcCc-chhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHH
Confidence            23344445555 67788888999999997654 5888888888899999988 455578899999999999998875554


Q ss_pred             hhhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCCh------HHHHHHHHhCcHHHHHHhcCC--CCCcchhhHHHH
Q 012897          161 FDQVRPALPALAQLVHSN-DEEVLTDACWALSYLSDGTN------DKIQAVIEAGVCPRLVELLGH--PSPSVLIPALRT  231 (454)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~------~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~  231 (454)
                      .....+.++.|..++++. .++|.+-++.++.|++...+      .....++..++.+.+-.+...  .++++....-..
T Consensus       236 ~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L  315 (442)
T KOG2759|consen  236 KLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFL  315 (442)
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHH
Confidence            455568899999999754 68899999999999997764      233345554554444444322  344433222111


Q ss_pred             Hh-------Hhhcc--------------Cc---------cchhhhhc--cCChHHHHHhhcCCcchhHHHHHHHHHHHHh
Q 012897          232 VG-------NIVTG--------------DD---------FQTQCIIT--YGALPYLLGLLTHSHKKSIKKEACWTISNIT  279 (454)
Q Consensus       232 L~-------~l~~~--------------~~---------~~~~~~~~--~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~  279 (454)
                      -.       .++..              +|         +....+.+  ..+++.|+.+|+...+|.+-.-||.-++.+.
T Consensus       316 ~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~V  395 (442)
T KOG2759|consen  316 TEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYV  395 (442)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHH
Confidence            11       11111              11         11111222  2468899999998867889999999999999


Q ss_pred             cCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897          280 AGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS  322 (454)
Q Consensus       280 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  322 (454)
                      +..|+.+..+.+.|+=..++++++++|++||..|+.|+..+..
T Consensus       396 r~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  396 RHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             HhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            9989988888899999999999999999999999999988765

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.07  E-value=2.8e-08  Score=91.60  Aligned_cols=347  Identities=12%  Similarity=0.043  Sum_probs=212.1

Q ss_pred             HHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC----CChHH
Q 012897           11 SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH----GAVPI   86 (454)
Q Consensus        11 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----g~i~~   86 (454)
                      ..+.+++..+..++.+..++..-.+...-++......++...+..+|..|+.+|.+-+.   ..+..+...    -+++.
T Consensus       149 ~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~---fv~~nf~~E~erNy~mqv  225 (858)
T COG5215         149 SGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM---FVQGNFCYEEERNYFMQV  225 (858)
T ss_pred             HhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH---HHHHhhcchhhhchhhee
Confidence            55667777777777664221221111111223333445555557889999999887332   111112111    23455


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh-----
Q 012897           87 FVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF-----  161 (454)
Q Consensus        87 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~-----  161 (454)
                      .+..-+.++.+++..+..|+..+..-...+-+..++.-......+.+ ++++.++..++...-+.+|........     
T Consensus       226 vceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m-ks~nd~va~qavEfWsticeEeid~~~e~~~~  304 (858)
T COG5215         226 VCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFM-KSQNDEVAIQAVEFWSTICEEEIDGEMEDKYL  304 (858)
T ss_pred             eehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchHHHHHHHHHHHHHHHHHhhhHHHHhhc
Confidence            56666778999999999999998743333333333333233333444 778889999998888788765411111     


Q ss_pred             ------------hhhhchHHHHHHhhcCC-------ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCC
Q 012897          162 ------------DQVRPALPALAQLVHSN-------DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP  222 (454)
Q Consensus       162 ------------~~~~~~l~~l~~ll~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~  222 (454)
                                  .....++|.|+++|...       +..+-..|..||.-.+....   +.+++ .++..+-+-++++++
T Consensus       305 pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g---d~i~~-pVl~FvEqni~~~~w  380 (858)
T COG5215         305 PEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG---DKIMR-PVLGFVEQNIRSESW  380 (858)
T ss_pred             ccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh---hHhHH-HHHHHHHHhccCchh
Confidence                        11356899999999752       44566677777766554322   22333 245555566788899


Q ss_pred             cchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHh
Q 012897          223 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLL  302 (454)
Q Consensus       223 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll  302 (454)
                      .-|+.+.-+++.+..+..+....-+-...+|.+...+.++ .-.++..++|+++.++.+-+..+.   ..+-++..+...
T Consensus       381 ~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad~va~~i~---p~~Hl~~~vsa~  456 (858)
T COG5215         381 ANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIADHVAMIIS---PCGHLVLEVSAS  456 (858)
T ss_pred             hhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHHHHHHHhcC---ccccccHHHHHH
Confidence            9999999999999988776655556668889999999877 889999999999999865433222   223333333322


Q ss_pred             hh---cchhhHHHHHHHHHHhcCCCCHHHH--H-HHHH--cCCcHHHhhccC--CCCHHHHHHHHHHHHHHHHhhhh
Q 012897          303 QN---AEFDIKKEAAWAISNATSGGTHEQI--K-YLVR--EGCIKPLCDLFV--CPDPRIVTVCLEGLENILKVGEA  369 (454)
Q Consensus       303 ~~---~~~~v~~~a~~aL~~l~~~~~~~~~--~-~l~~--~~~i~~L~~~l~--~~~~~v~~~al~~L~~l~~~~~~  369 (454)
                      .-   +.+.+..++.|...|+..+-.+...  . .+..  ...+..|++.-+  ..+...|.....+|..++..+..
T Consensus       457 liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d  533 (858)
T COG5215         457 LIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPD  533 (858)
T ss_pred             HhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcch
Confidence            21   3778889999999999875432210  1 1111  122333333222  23456777788888888776554

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=8e-07  Score=87.68  Aligned_cols=331  Identities=15%  Similarity=0.179  Sum_probs=225.5

Q ss_pred             HHHHHHHHHHHHHhccCCCCcHHH----HHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHH
Q 012897           11 SLQLEATTQFRKLLSIERSPPIEE----VIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPI   86 (454)
Q Consensus        11 ~~~~~a~~~L~~l~~~~~~~~~~~----~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~   86 (454)
                      +-...++.+|.++++.. ++....    ..--|.++.+..++.....+.++..|+.++.-++. +.++...+.+.|.+..
T Consensus      1740 ~~v~m~LtAL~Nli~~n-PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSAN-PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTT 1817 (2235)
T ss_pred             HHHHHHHHHHHHHHhhC-cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHH
Confidence            35567899999999885 222221    12237788888888876658999999999988887 8899999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC---CCCChhh
Q 012897           87 FVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK---PQPPFDQ  163 (454)
Q Consensus        87 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~  163 (454)
                      |+.+|.+ -|..|+.++.+|..+++. ++......+.|++..+..++-...++..+.+++..+..+..++   +...+..
T Consensus      1818 LL~lLHS-~PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL 1895 (2235)
T KOG1789|consen 1818 LLTLLHS-QPSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITL 1895 (2235)
T ss_pred             HHHHHhc-ChHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeeh
Confidence            9998875 478899999999999754 4566777888889888888877788999999999999999886   3333332


Q ss_pred             hhchHHHHHHhhcC-------------CChh------HHHHHHHHHHHhccC--------------ChHHH---------
Q 012897          164 VRPALPALAQLVHS-------------NDEE------VLTDACWALSYLSDG--------------TNDKI---------  201 (454)
Q Consensus       164 ~~~~l~~l~~ll~~-------------~~~~------v~~~a~~~L~~l~~~--------------~~~~~---------  201 (454)
                      ....-..++..+++             .+|+      .+...-..+..++..              -+++.         
T Consensus      1896 ~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E 1975 (2235)
T KOG1789|consen 1896 IKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKE 1975 (2235)
T ss_pred             HHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccC
Confidence            22222233333332             1222      222222233332210              00000         


Q ss_pred             --------HHHH-------------HhCcHHHHHHhcCCCCCc--chhhHHHHHhHhhccCccchhhhhccCChHHHHHh
Q 012897          202 --------QAVI-------------EAGVCPRLVELLGHPSPS--VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGL  258 (454)
Q Consensus       202 --------~~~~-------------~~~~i~~L~~ll~~~~~~--v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~  258 (454)
                              +.++             -.++++.+..++..++++  ....-..++..+.+..+.....+-..|.+|.++..
T Consensus      1976 ~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~A 2055 (2235)
T KOG1789|consen 1976 CAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTA 2055 (2235)
T ss_pred             cccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHH
Confidence                    0010             013555666666554433  22333344455556667677777788999999999


Q ss_pred             hcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCc
Q 012897          259 LTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCI  338 (454)
Q Consensus       259 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i  338 (454)
                      +... +..+-..|..+|..++.. .-+...+.....+..++..++. .+....-|+.+|..+......+........|++
T Consensus      2056 m~~~-n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK-~~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLv 2132 (2235)
T KOG1789|consen 2056 MCLQ-NTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKK-QPSLMGLAAEALKRLMKRNTGELVAQMLKCGLV 2132 (2235)
T ss_pred             HHhc-CCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHh-cchHHHHHHHHHHHHHHHhHHHHHHHHhccCcH
Confidence            9777 666778899999988753 5566666666677777777664 345566899999999887666777777889999


Q ss_pred             HHHhhccCCC
Q 012897          339 KPLCDLFVCP  348 (454)
Q Consensus       339 ~~L~~~l~~~  348 (454)
                      +.|.++++..
T Consensus      2133 pyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2133 PYLLQLLDSS 2142 (2235)
T ss_pred             HHHHHHhccc
Confidence            9999999853

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.03  E-value=2.8e-09  Score=96.90  Aligned_cols=228  Identities=21%  Similarity=0.263  Sum_probs=156.5

Q ss_pred             ChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHHHHHh------cCChHHHHHHhchhhhhhHHHHHHHHHHhhcC
Q 012897           83 AVPIFVKLLA--SPSDDVREQAVWALGNVAGDSPRCRDLVLS------QGALIPLLAQLNERAKLSMLRNATWTLSNFCR  154 (454)
Q Consensus        83 ~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  154 (454)
                      ....++.+|.  +.++++....+..+..+..+.+...+.+..      .....++++++ ..+|..+...++..+..+..
T Consensus        56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~  134 (312)
T PF03224_consen   56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLS  134 (312)
T ss_dssp             ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence            3555555555  367999999999999999887765555444      23578888877 66699999999999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhcC----CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc-----CC--CCCc
Q 012897          155 GKPQPPFDQVRPALPALAQLVHS----NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-----GH--PSPS  223 (454)
Q Consensus       155 ~~~~~~~~~~~~~l~~l~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-----~~--~~~~  223 (454)
                      ..+........+.++.++.++.+    ++.+++..++.++.++.... .....+.+.++++.+..++     .+  ...+
T Consensus       135 ~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~-~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q  213 (312)
T PF03224_consen  135 QGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK-EYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ  213 (312)
T ss_dssp             STTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH-HHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred             cCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc-hhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence            87665555445666767666654    45667899999999998664 4557788889999999999     22  3467


Q ss_pred             chhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHH-HHHHHHhCCChHHHHHHh
Q 012897          224 VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD-QIQAVIDAGLVGPLVNLL  302 (454)
Q Consensus       224 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~ll  302 (454)
                      ++..++.|++.++.. ++....+.+.++++.+..+++.....++.+-+..++.|+....++ ....++..++++.+-.+.
T Consensus       214 l~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~  292 (312)
T PF03224_consen  214 LQYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLS  292 (312)
T ss_dssp             HHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHh
Confidence            889999999999974 446667777789999999998776889999999999999985443 666777776666655555


Q ss_pred             hhc--chhhHHHH
Q 012897          303 QNA--EFDIKKEA  313 (454)
Q Consensus       303 ~~~--~~~v~~~a  313 (454)
                      ..+  |+++....
T Consensus       293 ~rk~~Dedl~edl  305 (312)
T PF03224_consen  293 ERKWSDEDLTEDL  305 (312)
T ss_dssp             SS--SSHHHHHHH
T ss_pred             cCCCCCHHHHHHH
Confidence            443  66666543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.03  E-value=1.7e-07  Score=89.89  Aligned_cols=177  Identities=15%  Similarity=0.143  Sum_probs=101.0

Q ss_pred             HHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhC
Q 012897          213 LVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDA  292 (454)
Q Consensus       213 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~  292 (454)
                      |-++|.+.+..+|.-++..|.......+...+     .--..++.+|+++ +..+|+.|...+-.+...  .++..    
T Consensus       318 LgkFL~n~d~NirYvaLn~L~r~V~~d~~avq-----rHr~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~~----  385 (866)
T KOG1062|consen  318 LGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQ-----RHRSTILECLKDP-DVSIKRRALELSYALVNE--SNVRV----  385 (866)
T ss_pred             HHHHhcCCccceeeeehhhHHhhhcCCcHHHH-----HHHHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHHH----
Confidence            33344444444444444444444433322111     2234688889999 999999999888888753  33333    


Q ss_pred             CChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhh-hhhh
Q 012897          293 GLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG-EAEK  371 (454)
Q Consensus       293 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~-~~~~  371 (454)
                       ++..|+.+|...+++.+...+.-+..++..-.++.+=      .+..+...++..-.-|..-+...+..++..+ ....
T Consensus       386 -mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W------~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~  458 (866)
T KOG1062|consen  386 -MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRW------HIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELH  458 (866)
T ss_pred             -HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchh------HHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchh
Confidence             4566888888889999998888888887755443321      2556666666655555555555555555443 2221


Q ss_pred             hccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 012897          372 NMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL  420 (454)
Q Consensus       372 ~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  420 (454)
                      ..     ....+...+.+       ..++..+.+.+.+-|.|+|.+|-+
T Consensus       459 ~y-----~~~rLy~a~~~-------~~~~~is~e~l~qVa~W~IGEYGd  495 (866)
T KOG1062|consen  459 EY-----AVLRLYLALSE-------DTLLDISQEPLLQVASWCIGEYGD  495 (866)
T ss_pred             hH-----HHHHHHHHHhh-------hhhhhhhhhhHHHHHHHHhhhhhH
Confidence            10     01111111111       113445556668888999988874

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=99.03  E-value=8e-10  Score=102.29  Aligned_cols=265  Identities=17%  Similarity=0.146  Sum_probs=182.4

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH--HHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCC
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR--DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP  159 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  159 (454)
                      -++..++..|+++.+.+|..++...+.|+.--..+.  +.+...|  ..|.+.+ ....+++.-..+.+++.+.......
T Consensus       604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~  680 (975)
T COG5181         604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENL-GEDYPEVLGSILKAICSIYSVHRFR  680 (975)
T ss_pred             HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhc-CcccHHHHHHHHHHHHHHhhhhccc
Confidence            367788889999999999999998888763211111  1222222  2244444 5667888888888888877554222


Q ss_pred             C-hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhcc
Q 012897          160 P-FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG  238 (454)
Q Consensus       160 ~-~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  238 (454)
                      . ..-..+++|.+..+|++...+++.+.+..++.++...++.+..---..+.-.|+..|.+.+.++|.+|..+++.++..
T Consensus       681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a  760 (975)
T COG5181         681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA  760 (975)
T ss_pred             ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence            2 223478999999999999999999999999999988776433221223444577778888999999999999988752


Q ss_pred             CccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHH
Q 012897          239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAIS  318 (454)
Q Consensus       239 ~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~  318 (454)
                             +--..++..|+.-|+.. +.+.|.-...+++-.+..+.       --.++|.|+.=...++..|+.-.+.+++
T Consensus       761 -------iGPqdvL~~LlnnLkvq-eRq~RvctsvaI~iVae~cg-------pfsVlP~lm~dY~TPe~nVQnGvLkam~  825 (975)
T COG5181         761 -------IGPQDVLDILLNNLKVQ-ERQQRVCTSVAISIVAEYCG-------PFSVLPTLMSDYETPEANVQNGVLKAMC  825 (975)
T ss_pred             -------cCHHHHHHHHHhcchHH-HHHhhhhhhhhhhhhHhhcC-------chhhHHHHHhcccCchhHHHHhHHHHHH
Confidence                   22224566777777665 54444444444444433111       1246777777777778889999999999


Q ss_pred             HhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 012897          319 NATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV  366 (454)
Q Consensus       319 ~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~  366 (454)
                      .+...-......++..  ..+.|.+.+.+.|+.-++.+...+.++.-.
T Consensus       826 fmFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Ln  871 (975)
T COG5181         826 FMFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLN  871 (975)
T ss_pred             HHHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcC
Confidence            9988655555555554  567777788889998888888888888654

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.02  E-value=8.9e-08  Score=91.84  Aligned_cols=109  Identities=18%  Similarity=0.166  Sum_probs=82.6

Q ss_pred             chHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhh
Q 012897          166 PALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQC  245 (454)
Q Consensus       166 ~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  245 (454)
                      -.+..|-++|.+.|..+++-++..|..+...++...+     ..=..++.+|++++..++..|+..+-.++..+  ... 
T Consensus       313 lainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avq-----rHr~tIleCL~DpD~SIkrralELs~~lvn~~--Nv~-  384 (866)
T KOG1062|consen  313 LAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQ-----RHRSTILECLKDPDVSIKRRALELSYALVNES--NVR-  384 (866)
T ss_pred             HHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHH-----HHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc--cHH-
Confidence            3456777888888888888888888888877665433     22356899999999999999999988887533  333 


Q ss_pred             hhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc-CCHHHHH
Q 012897          246 IITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQ  287 (454)
Q Consensus       246 ~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~-~~~~~~~  287 (454)
                          ..++.|+..|.+. +++++...+.-+..++. ..|+.++
T Consensus       385 ----~mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W  422 (866)
T KOG1062|consen  385 ----VMVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRW  422 (866)
T ss_pred             ----HHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchh
Confidence                3456899999988 99999999988888886 3444433

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.01  E-value=3.8e-07  Score=86.78  Aligned_cols=379  Identities=14%  Similarity=0.124  Sum_probs=230.5

Q ss_pred             ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCC-------CChhHHHHHHHHHHHhcCCCchhh
Q 012897            3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-------DYPQLQFEAAWALTNIASGTSENT   75 (454)
Q Consensus         3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~-------~~~~v~~~a~~~L~~l~~~~~~~~   75 (454)
                      +...++|.+.+...++.+.+++...  ......+...++|.+.......       ++..+...+..+-           
T Consensus       643 rEf~sPDeemkkivLKVv~qcc~t~--Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia-----------  709 (1172)
T KOG0213|consen  643 REFGSPDEEMKKIVLKVVKQCCATD--GVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIA-----------  709 (1172)
T ss_pred             HhhCCChHHHHHHHHHHHHHHhccc--CCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHH-----------
Confidence            4457889999999999999988774  4445567777788777654322       1122222222221           


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh--hhHHHHHhcCChHHHHHHhc-hhhhhhHHHHHHHHHHhh
Q 012897           76 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP--RCRDLVLSQGALIPLLAQLN-ERAKLSMLRNATWTLSNF  152 (454)
Q Consensus        76 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~l  152 (454)
                      ..+.....+..++.-+.+.++..|...+.++.++...-.  ..-..+ +...+..++..++ ++....+.-....++.+-
T Consensus       710 ~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderl-eE~lidgil~Afqeqtt~d~vml~gfg~V~~~  788 (1172)
T KOG0213|consen  710 AKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERL-EERLIDGILYAFQEQTTEDSVMLLGFGTVVNA  788 (1172)
T ss_pred             HHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHH-HHHHHHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence            222223345666666777888888888877777653221  111111 1123455555553 233344555555555554


Q ss_pred             cCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHH
Q 012897          153 CRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPAL  229 (454)
Q Consensus       153 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~  229 (454)
                      ...   ........++..++..|++..+.++..++..++.++.-   ..+. +.+...|  -.|...|....+++.-..+
T Consensus       789 lg~---r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee-~~m~~lG--vvLyEylgeeypEvLgsIL  862 (1172)
T KOG0213|consen  789 LGG---RVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEE-KLMGHLG--VVLYEYLGEEYPEVLGSIL  862 (1172)
T ss_pred             Hhh---ccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHH-HHHHHhh--HHHHHhcCcccHHHHHHHH
Confidence            322   22334456777888999999999999999999887632   1111 1122223  2466777778888887777


Q ss_pred             HHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHH--HHHHhCCChHHHHHHhhhcch
Q 012897          230 RTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI--QAVIDAGLVGPLVNLLQNAEF  307 (454)
Q Consensus       230 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~--~~l~~~~~i~~L~~ll~~~~~  307 (454)
                      .+|..++..-.-.+..---.+++|.|..+|++. +.+++.++...++.++...++.+  +++.  .+--.|+++|++.+.
T Consensus       863 gAikaI~nvigm~km~pPi~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~v~aREWM--RIcfeLlelLkahkK  939 (1172)
T KOG0213|consen  863 GAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEYVSAREWM--RICFELLELLKAHKK  939 (1172)
T ss_pred             HHHHHHHHhccccccCCChhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCcccCCHHHHH--HHHHHHHHHHHHHHH
Confidence            766666542211111111237899999999999 99999999999999997544421  1121  123347788888889


Q ss_pred             hhHHHHHHHHHHhcCCCCHHHH-HHHHH-----------------------c---CCcHHHhhccCCCCHHHHHHHHHHH
Q 012897          308 DIKKEAAWAISNATSGGTHEQI-KYLVR-----------------------E---GCIKPLCDLFVCPDPRIVTVCLEGL  360 (454)
Q Consensus       308 ~v~~~a~~aL~~l~~~~~~~~~-~~l~~-----------------------~---~~i~~L~~~l~~~~~~v~~~al~~L  360 (454)
                      ++|.+|...++.++..-.+... ..+.+                       +   .+++.|+.-...++..|+.-++.++
T Consensus       940 ~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkal 1019 (1172)
T KOG0213|consen  940 EIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKAL 1019 (1172)
T ss_pred             HHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHH
Confidence            9999999999998875433221 11111                       1   2456666666677888999999999


Q ss_pred             HHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 012897          361 ENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETY  418 (454)
Q Consensus       361 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~  418 (454)
                      ..++.+-.+..+.         |.-.     ..+.|+.-+.+.+..=++.|..++..+
T Consensus      1020 sf~Feyigemskd---------Yiya-----v~PlleDAlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen 1020 SFMFEYIGEMSKD---------YIYA-----VTPLLEDALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred             HHHHHHHHHHhhh---------HHHH-----hhHHHHHhhccccHHHHHHHHHHHHHH
Confidence            9999876654432         2211     124444445555555555555555544

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.00  E-value=5.9e-08  Score=93.00  Aligned_cols=336  Identities=17%  Similarity=0.174  Sum_probs=225.6

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      +++...+|-+++.-+-..+.+.+...  +..    ..+.++.+++=..+++ |.+|..|++.++.+-.  +....     
T Consensus        55 vk~~~T~dlelKKlvyLYl~nYa~~~--P~~----a~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v--~~i~e-----  120 (734)
T KOG1061|consen   55 VKCMQTRDLELKKLVYLYLMNYAKGK--PDL----AILAVNTFLKDCEDPN-PLIRALALRTMGCLRV--DKITE-----  120 (734)
T ss_pred             HhhcccCCchHHHHHHHHHHHhhccC--chH----HHhhhhhhhccCCCCC-HHHHHHHhhceeeEee--hHHHH-----
Confidence            45666777788888888888887774  221    1245777877778888 8999998888777664  22222     


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCC-CC
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ-PP  160 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~  160 (454)
                      .+...+...+++.++.+|..+..+..++-..++   +.....|.+..|-.++ .+.++.|..+|+.+|..+....+. ..
T Consensus       121 y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~~~~~~~  196 (734)
T KOG1061|consen  121 YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHESHPSVNL  196 (734)
T ss_pred             HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHhCCCCCc
Confidence            246788889999999999999999999865443   5666778889999999 688999999999999999987653 33


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897          161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD  240 (454)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  240 (454)
                      .......+..++..+..-+..-+...+.++.+..-.++....     .++..+...+.+.++.+...+...+.++.....
T Consensus       197 ~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~  271 (734)
T KOG1061|consen  197 LELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQLVKYLK  271 (734)
T ss_pred             ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHHHHHHHH
Confidence            334455666666666666666666777777666544432222     456677888888888888888888888876444


Q ss_pred             cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHH-------------------------HHHHh-CC-
Q 012897          241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI-------------------------QAVID-AG-  293 (454)
Q Consensus       241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~-------------------------~~l~~-~~-  293 (454)
                      ... ..+-...-+.++.++.+. . .++.-+..-+.-+....++..                         ..+.. .+ 
T Consensus       272 ~~~-~~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl  348 (734)
T KOG1061|consen  272 QVN-ELLFKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANL  348 (734)
T ss_pred             HHH-HHHHHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHH
Confidence            322 222224555666666655 3 444444333332222222110                         01111 11 


Q ss_pred             --ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhh
Q 012897          294 --LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAE  370 (454)
Q Consensus       294 --~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~  370 (454)
                        ++..+......-+.+...++.+|+++++......       ++++..|.++++.+...+.+.++..+..++++.++.
T Consensus       349 ~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-------~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~  420 (734)
T KOG1061|consen  349 AQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-------NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNK  420 (734)
T ss_pred             HHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-------hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCc
Confidence              2222333333347788899999999998854321       578999999999888888888888999999876553

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.98  E-value=9.5e-08  Score=93.04  Aligned_cols=352  Identities=13%  Similarity=0.120  Sum_probs=223.2

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      ++.+.+.|-+.|..|+.-|.+=+... .-..+.--+..++..++++|.+.+ ++++..|+.|++-++..-++.+-.    
T Consensus        11 lekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le----   84 (1233)
T KOG1824|consen   11 LEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLE----   84 (1233)
T ss_pred             HHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHH----
Confidence            45678899999999999888766543 222333334467889999999999 999999999999999744443322    


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHh----ch-hhhhhHHHHHHHHHHhhcCCC
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQL----NE-RAKLSMLRNATWTLSNFCRGK  156 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l----~~-~~~~~~~~~a~~~L~~l~~~~  156 (454)
                      ..++.|+.-+-++-+..|..+.-.|......-++.........+.+.++..+    .. .+...++..++..+..+....
T Consensus        85 ~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~  164 (1233)
T KOG1824|consen   85 TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRF  164 (1233)
T ss_pred             HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhh
Confidence            2355566654444555555444444333222222222222233333343333    22 233446777777776665543


Q ss_pred             CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCCcchhhHHHHHhHh
Q 012897          157 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNI  235 (454)
Q Consensus       157 ~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l  235 (454)
                      ...-.......+..+..-+.++-..++..++.+|+.++...+..   ++. +++..+..-|.. ..+.....-..+|+.+
T Consensus       165 g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~---ly~-~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i  240 (1233)
T KOG1824|consen  165 GTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD---LYV-ELIEHLLKGLSNRTQMSATRTYIQCLAAI  240 (1233)
T ss_pred             cccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH---HHH-HHHHHHHhccCCCCchHHHHHHHHHHHHH
Confidence            22222244566777777788888999999999999998654422   222 556666666644 3445555667788888


Q ss_pred             hccCccchhhhhccCChHHHHHhh---cCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhh--------
Q 012897          236 VTGDDFQTQCIITYGALPYLLGLL---THSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN--------  304 (454)
Q Consensus       236 ~~~~~~~~~~~~~~~~l~~L~~~L---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--------  304 (454)
                      ++........-. ..+++.+.+..   ... +.++|+....++..+....+..+...+ ..++..+++.+..        
T Consensus       241 ~r~ag~r~~~h~-~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~-pei~~l~l~yisYDPNy~yd~  317 (1233)
T KOG1824|consen  241 CRQAGHRFGSHL-DKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHV-PEIINLCLSYISYDPNYNYDT  317 (1233)
T ss_pred             HHHhcchhhccc-chhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccc-hHHHHHHHHHhccCCCCCCCC
Confidence            875543332211 25677888877   556 788999999999988876666553333 2233444433321        


Q ss_pred             --------------------------cchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHH
Q 012897          305 --------------------------AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE  358 (454)
Q Consensus       305 --------------------------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~  358 (454)
                                                -++.||+.|+.++..+... ..+....+. ..+-+.++.-++..++.|+.-+..
T Consensus       318 ~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS-R~E~L~~~~-q~l~p~lI~RfkEREEnVk~dvf~  395 (1233)
T KOG1824|consen  318 EEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS-RLEMLPDFY-QTLGPALISRFKEREENVKADVFH  395 (1233)
T ss_pred             ccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc-cHHHHHHHH-HHhCHHHHHHHHHHhhhHHHHHHH
Confidence                                      0257999999999998874 334444433 356788999999999999888888


Q ss_pred             HHHHHHHhhh
Q 012897          359 GLENILKVGE  368 (454)
Q Consensus       359 ~L~~l~~~~~  368 (454)
                      ++..+++.-.
T Consensus       396 ~yi~ll~qt~  405 (1233)
T KOG1824|consen  396 AYIALLKQTR  405 (1233)
T ss_pred             HHHHHHHcCC
Confidence            8888877543

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.95  E-value=2.9e-08  Score=95.03  Aligned_cols=173  Identities=17%  Similarity=0.171  Sum_probs=102.8

Q ss_pred             ccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCh
Q 012897            5 VWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAV   84 (454)
Q Consensus         5 L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i   84 (454)
                      ..+.+|.+|..|++.+..+--.    .    +...+...+.+++++.+ +-+|..++-+..++-..+   .+.....|++
T Consensus        95 ~~d~np~iR~lAlrtm~~l~v~----~----i~ey~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~~---~~~~~~~gl~  162 (734)
T KOG1061|consen   95 CEDPNPLIRALALRTMGCLRVD----K----ITEYLCDPLLKCLKDDD-PYVRKTAAVCVAKLFDID---PDLVEDSGLV  162 (734)
T ss_pred             CCCCCHHHHHHHhhceeeEeeh----H----HHHHHHHHHHHhccCCC-hhHHHHHHHHHHHhhcCC---hhhccccchh
Confidence            4566777777776665544222    1    11235778999999999 999999999999888733   4556678999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhh
Q 012897           85 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQV  164 (454)
Q Consensus        85 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  164 (454)
                      +.|..++.+.++.+..+|+.+|..+....+...........+..++..+ ..-++   -.-+.+|..++.+.+... .-.
T Consensus       163 ~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al-~ec~E---W~qi~IL~~l~~y~p~d~-~ea  237 (734)
T KOG1061|consen  163 DALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEAL-NECTE---WGQIFILDCLAEYVPKDS-REA  237 (734)
T ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHH-HHhhh---hhHHHHHHHHHhcCCCCc-hhH
Confidence            9999999999999999999999999865542111111111233333333 11111   122233334444433333 222


Q ss_pred             hchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 012897          165 RPALPALAQLVHSNDEEVLTDACWALSYLS  194 (454)
Q Consensus       165 ~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~  194 (454)
                      ..++..+...+.+.++.+...+...+.++.
T Consensus       238 ~~i~~r~~p~Lqh~n~avvlsavKv~l~~~  267 (734)
T KOG1061|consen  238 EDICERLTPRLQHANSAVVLSAVKVILQLV  267 (734)
T ss_pred             HHHHHHhhhhhccCCcceEeehHHHHHHHH
Confidence            344445555555555555555555554444

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.95  E-value=2.8e-07  Score=85.22  Aligned_cols=351  Identities=17%  Similarity=0.141  Sum_probs=213.9

Q ss_pred             CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHH
Q 012897            8 DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF   87 (454)
Q Consensus         8 ~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L   87 (454)
                      .+..+|+.|+++|..-+-.-+......--..-+++..++.-+.++ .+++..|..||.++..-.-.....+++.-.....
T Consensus       190 t~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d-~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt  268 (858)
T COG5215         190 TTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGND-EELQHAAFGCLNKIMMLYYKFMQSYMENALAALT  268 (858)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357889999999987321110011111112234566677777777 9999999999999987566666677776677777


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhhCCChhhHH----------------HHHhcCChHHHHHHhch-hh-----hhhHHHHH
Q 012897           88 VKLLASPSDDVREQAVWALGNVAGDSPRCRD----------------LVLSQGALIPLLAQLNE-RA-----KLSMLRNA  145 (454)
Q Consensus        88 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~----------------~~~~~~~i~~l~~~l~~-~~-----~~~~~~~a  145 (454)
                      ...++++++++..+++...+.+|...-...-                .....+++|-++++|.+ ++     +-.+-..|
T Consensus       269 ~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA  348 (858)
T COG5215         269 GRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAA  348 (858)
T ss_pred             HHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhH
Confidence            7888999999999999999888853211100                01123467888888853 22     22244444


Q ss_pred             HHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcch
Q 012897          146 TWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVL  225 (454)
Q Consensus       146 ~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~  225 (454)
                      ..+|.-.+...   .......++..+-.-+++++..-++.+..+++.+..........-+-...+|.+...+.++.-.++
T Consensus       349 ~sCLqlfaq~~---gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk  425 (858)
T COG5215         349 SSCLQLFAQLK---GDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVK  425 (858)
T ss_pred             HHHHHHHHHHh---hhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehh
Confidence            44444444332   112234455666667788888899999999999987765544444445778888888888888899


Q ss_pred             hhHHHHHhHhhccCccchhhhhccCChHH-----HHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHH---HHh---CCC
Q 012897          226 IPALRTVGNIVTGDDFQTQCIITYGALPY-----LLGLLTHSHKKSIKKEACWTISNITAGNRDQIQA---VID---AGL  294 (454)
Q Consensus       226 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~-----L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~---l~~---~~~  294 (454)
                      ..++||++.++.+-.   ..+-..+.++.     ++.+.+   .+.+....+|...|+..+-++....   ++.   ..+
T Consensus       426 ~ttAwc~g~iad~va---~~i~p~~Hl~~~vsa~liGl~D---~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai  499 (858)
T COG5215         426 STTAWCFGAIADHVA---MIISPCGHLVLEVSASLIGLMD---CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAI  499 (858)
T ss_pred             hHHHHHHHHHHHHHH---HhcCccccccHHHHHHHhhhhc---cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHH
Confidence            999999999987543   22222233322     333333   4567788999999998754333211   110   112


Q ss_pred             hHHHHHHhh--hcchhhHHHHHHHHHHhcCCCCHHHHHHHHH---------cCCcHHHhhccCCCC----HHHHHHHHHH
Q 012897          295 VGPLVNLLQ--NAEFDIKKEAAWAISNATSGGTHEQIKYLVR---------EGCIKPLCDLFVCPD----PRIVTVCLEG  359 (454)
Q Consensus       295 i~~L~~ll~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~---------~~~i~~L~~~l~~~~----~~v~~~al~~  359 (454)
                      +..|+...+  ..+...|..+..+|+.+....+......+..         ...+..+-+.+...|    .+++...+..
T Consensus       500 ~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~v  579 (858)
T COG5215         500 LNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGV  579 (858)
T ss_pred             HHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence            333333222  2366788888999999888765443332221         012233333333333    3455666666


Q ss_pred             HHHHHHhhh
Q 012897          360 LENILKVGE  368 (454)
Q Consensus       360 L~~l~~~~~  368 (454)
                      |..+++...
T Consensus       580 l~aiir~~~  588 (858)
T COG5215         580 LEAIIRTRR  588 (858)
T ss_pred             HHHHHHhcC
Confidence            666666543

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=3.4e-06  Score=81.10  Aligned_cols=343  Identities=12%  Similarity=0.100  Sum_probs=220.3

Q ss_pred             ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHH-HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      ..+...|..+|..|...|..+++..+.+..+.++ ..-++..|+.+|.+.. ..+|..++..|..++.+++...+.+.-.
T Consensus       129 ~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr-E~IRNe~iLlL~eL~k~n~~IQKlVAFE  207 (970)
T KOG0946|consen  129 QSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR-EPIRNEAILLLSELVKDNSSIQKLVAFE  207 (970)
T ss_pred             HHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh-hhhchhHHHHHHHHHccCchHHHHHHHH
Confidence            3455678899999999999999887555555544 4577999999999999 8999999999999999999999998888


Q ss_pred             CChHHHHHhhCCC----CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchh--hh----------hhHHHHH
Q 012897           82 GAVPIFVKLLASP----SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER--AK----------LSMLRNA  145 (454)
Q Consensus        82 g~i~~L~~lL~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~----------~~~~~~a  145 (454)
                      +++..|+.++...    .--+.+.|+..|.||..++..+...+.+.+.++.|.++|...  .+          ..-...+
T Consensus       208 NaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~  287 (970)
T KOG0946|consen  208 NAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEA  287 (970)
T ss_pred             HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHH
Confidence            9999999999862    246888899999999998888999999999999999888421  11          1123345


Q ss_pred             HHHHHhhcCCCCCCC-------hhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCChHHHHHHHHhC--------
Q 012897          146 TWTLSNFCRGKPQPP-------FDQVRPALPALAQLVHSN--DEEVLTDACWALSYLSDGTNDKIQAVIEAG--------  208 (454)
Q Consensus       146 ~~~L~~l~~~~~~~~-------~~~~~~~l~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--------  208 (454)
                      +.+++.+..-.....       ......++..|..++-++  ..+++..++.+++++.+.+..+...+.+..        
T Consensus       288 Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr  367 (970)
T KOG0946|consen  288 LQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPR  367 (970)
T ss_pred             HHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCc
Confidence            566666655432111       122356777788777666  456788888899999888776666665531        


Q ss_pred             --cHHHHHHhcCC-CCCcchhhHHHHHhHhhccCccchhhhhcc-----------CCh--HHHHHhhcCCcchhHHHHHH
Q 012897          209 --VCPRLVELLGH-PSPSVLIPALRTVGNIVTGDDFQTQCIITY-----------GAL--PYLLGLLTHSHKKSIKKEAC  272 (454)
Q Consensus       209 --~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----------~~l--~~L~~~L~~~~~~~v~~~a~  272 (454)
                        ++-.++.+... .....|.++++|+..+...+......++..           .+.  ..++..+.+. ++---..++
T Consensus       368 ~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l~tllp~~~nst~Nsl~ag~l~~~~l~s~-d~~~nwFt~  446 (970)
T KOG0946|consen  368 PSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFLKTLLPSSTNSTSNSLSAGQLLLVGLSST-DSLDNWFTA  446 (970)
T ss_pred             cchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHHHHHhhhhccccccchhhhhHHHHhhccc-hHHHHHHHH
Confidence              12223333333 456789999999988888776554433310           000  1122222222 322223334


Q ss_pred             HHHHHHhcCCHHHHHHHHh--------CC---ChHHHHHHhhh---cchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCc
Q 012897          273 WTISNITAGNRDQIQAVID--------AG---LVGPLVNLLQN---AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCI  338 (454)
Q Consensus       273 ~~L~nl~~~~~~~~~~l~~--------~~---~i~~L~~ll~~---~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i  338 (454)
                      -+|..+...+......+..        ..   .+...+..+..   ..+..+..-+..|+.+..+++......+.+.+.+
T Consensus       447 v~lmh~l~dn~~~kEeLlrV~l~~~~gn~p~tlL~~~ct~~~~~~t~r~qt~vglLmlL~~WL~~cp~AV~dFLs~~s~i  526 (970)
T KOG0946|consen  447 VILMHLLQDNDQLKEELLRVPLAVDTGNDPDTLLFQQCTNLKLQGTSRHQTRVGLLMLLITWLYGCPDAVKDFLSESSII  526 (970)
T ss_pred             HHHHHHHHHhHHHHHHHHhhhhcccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcCCcHHHHHHHccccHH
Confidence            4444444333333322221        01   11111222211   1233344456666777777665555555667888


Q ss_pred             HHHhhccCC
Q 012897          339 KPLCDLFVC  347 (454)
Q Consensus       339 ~~L~~~l~~  347 (454)
                      +.|...+-.
T Consensus       527 q~Ltt~l~~  535 (970)
T KOG0946|consen  527 QYLTTQLMD  535 (970)
T ss_pred             HHHHHHHhh
Confidence            888876654

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.94  E-value=3.3e-08  Score=90.00  Aligned_cols=227  Identities=14%  Similarity=0.179  Sum_probs=159.2

Q ss_pred             hHHHHHHhchh-hhhhHHHHHHHHHHhhcCCCCCCChhhhh-------chHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 012897          126 LIPLLAQLNER-AKLSMLRNATWTLSNFCRGKPQPPFDQVR-------PALPALAQLVHSNDEEVLTDACWALSYLSDGT  197 (454)
Q Consensus       126 i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-------~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  197 (454)
                      ...++.++... .++++..+++..+..+....+........       .....+++++.++|..+...++..+..+....
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~  136 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG  136 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence            55666777666 78899999999999999887644332221       24567777999999999999999999998776


Q ss_pred             hHHHHHHHHhCcHHHHHHhcCC----CCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhh------cCCcchhH
Q 012897          198 NDKIQAVIEAGVCPRLVELLGH----PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLL------THSHKKSI  267 (454)
Q Consensus       198 ~~~~~~~~~~~~i~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L------~~~~~~~v  267 (454)
                      +....... .+.++.++.++.+    ++..++..++.++.++.. .+..+..+++.++++.+..++      .+....++
T Consensus       137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            55434322 3556666666654    455677889999999996 455777888999999999999      44446788


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc-chhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccC
Q 012897          268 KKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV  346 (454)
Q Consensus       268 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~  346 (454)
                      +.+++.++..++. +++....+.+.++++.|+++++.. .++|.+-++.++.|++..........++..++++.+..+..
T Consensus       215 ~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  215 QYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             HHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred             HHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence            8999999988875 477777888888999999999875 77899999999999999876657788888787777766654


Q ss_pred             --CCCHHHHHH
Q 012897          347 --CPDPRIVTV  355 (454)
Q Consensus       347 --~~~~~v~~~  355 (454)
                        .+|+++..-
T Consensus       294 rk~~Dedl~ed  304 (312)
T PF03224_consen  294 RKWSDEDLTED  304 (312)
T ss_dssp             S--SSHHHHHH
T ss_pred             CCCCCHHHHHH
Confidence              367776653

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=4e-06  Score=72.58  Aligned_cols=358  Identities=14%  Similarity=0.151  Sum_probs=236.7

Q ss_pred             ccccCCCHHHHHHHHHHHHHHhccCCCCc---HHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 012897            3 AGVWSDDSSLQLEATTQFRKLLSIERSPP---IEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVI   79 (454)
Q Consensus         3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~---~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   79 (454)
                      .+|..+|..++.-+++.+..++.+.....   +..++..++++.++.++...+ .++...|...+..++. .+.....++
T Consensus        89 rGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpaaleaiF  166 (524)
T KOG4413|consen   89 RGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPAALEAIF  166 (524)
T ss_pred             hcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHHHHHHhc
Confidence            46778899999999999999987753222   444568899999999999999 8999999999999998 777777777


Q ss_pred             hCCChHHH--HHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCC
Q 012897           80 DHGAVPIF--VKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP  157 (454)
Q Consensus        80 ~~g~i~~L--~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  157 (454)
                      +......+  ..+-...+.-.|...+..+..+.+-++........+|.+..|..-+....|.-++..++.....|.....
T Consensus       167 eSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteH  246 (524)
T KOG4413|consen  167 ESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH  246 (524)
T ss_pred             ccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh
Confidence            76655443  2333345677788888889999888888888888899888888888556788889999999999987766


Q ss_pred             CCChhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCChH---HHHHHHHh--CcHHHHHHhcCCCCCcchhhHHH
Q 012897          158 QPPFDQVRPALPALAQLVHSN--DEEVLTDACWALSYLSDGTND---KIQAVIEA--GVCPRLVELLGHPSPSVLIPALR  230 (454)
Q Consensus       158 ~~~~~~~~~~l~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~---~~~~~~~~--~~i~~L~~ll~~~~~~v~~~a~~  230 (454)
                      ...+....+++..+.+++.-.  +|--...++.....+.....-   .-+...+.  -.+...+.++...+++....|..
T Consensus       247 greflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiD  326 (524)
T KOG4413|consen  247 GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAID  326 (524)
T ss_pred             hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHH
Confidence            667777788999998888643  443333344443333221100   00111111  12444555667788999999999


Q ss_pred             HHhHhhccCccchhhhhccCC--h-HHHHHhhcCCcchhHHHHHHHHHHHHhc---CCHHH---------HHH-HHh---
Q 012897          231 TVGNIVTGDDFQTQCIITYGA--L-PYLLGLLTHSHKKSIKKEACWTISNITA---GNRDQ---------IQA-VID---  291 (454)
Q Consensus       231 ~L~~l~~~~~~~~~~~~~~~~--l-~~L~~~L~~~~~~~v~~~a~~~L~nl~~---~~~~~---------~~~-l~~---  291 (454)
                      +++.+....+ ..+.+.+.|-  . ..+....+.. ...-+..+..+|.+++.   -.+++         ... +.+   
T Consensus       327 alGilGSnte-GadlllkTgppaaehllarafdqn-ahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaa  404 (524)
T KOG4413|consen  327 ALGILGSNTE-GADLLLKTGPPAAEHLLARAFDQN-AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAA  404 (524)
T ss_pred             HHHhccCCcc-hhHHHhccCChHHHHHHHHHhccc-ccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHh
Confidence            9999987443 5555555443  2 2334444433 33456677788888774   12221         111 111   


Q ss_pred             ----CCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCC---HHHHHHHHHHHHHHH
Q 012897          292 ----AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPD---PRIVTVCLEGLENIL  364 (454)
Q Consensus       292 ----~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~---~~v~~~al~~L~~l~  364 (454)
                          ..-...+...++.+.++++..+..++..++.. +......+.+.++++.+.+.--..+   .+-+..++.++.+-+
T Consensus       405 qstkldPleLFlgilqQpfpEihcAalktfTAiaaq-PWalkeifakeefieiVtDastEhaKaakdAkYeccKAiaeaf  483 (524)
T KOG4413|consen  405 QSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ-PWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIAEAF  483 (524)
T ss_pred             hccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC-cHHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHHHHH
Confidence                12344555566777899999999999999874 3444444555677776665443222   123444555555544


Q ss_pred             H
Q 012897          365 K  365 (454)
Q Consensus       365 ~  365 (454)
                      .
T Consensus       484 l  484 (524)
T KOG4413|consen  484 L  484 (524)
T ss_pred             H
Confidence            3

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.91  E-value=2.1e-07  Score=86.75  Aligned_cols=337  Identities=13%  Similarity=0.121  Sum_probs=215.4

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch--hhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 012897           40 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE--NTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR  117 (454)
Q Consensus        40 ~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  117 (454)
                      ++...+..|++.. |++|.+|+...+.++.--..  ..+.+...|  ..|.+.|....+++.-..+.++..+.+... ++
T Consensus       605 ivStiL~~L~~k~-p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~-~~  680 (975)
T COG5181         605 IVSTILKLLRSKP-PDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHR-FR  680 (975)
T ss_pred             HHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhc-cc
Confidence            4556778899999 99999999888887751111  112233323  446666777788887777777766653221 11


Q ss_pred             H-HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChh-hhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 012897          118 D-LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD-QVRPALPALAQLVHSNDEEVLTDACWALSYLSD  195 (454)
Q Consensus       118 ~-~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~  195 (454)
                      . .--..++++.+.-+| .+.+..+..+....+..++...+...-. ..-.+.=-|+.+|.+.+.+++++|..+++.++.
T Consensus       681 ~mqpPi~~ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~  759 (975)
T COG5181         681 SMQPPISGILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR  759 (975)
T ss_pred             ccCCchhhccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence            1 011246788899888 7788999999999999999887543221 112222346677888999999999999999875


Q ss_pred             CChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHH
Q 012897          196 GTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI  275 (454)
Q Consensus       196 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L  275 (454)
                      .-..+       +++..|+.-|+..+-..|....-+++-.+..+.       -..++|.|+.=..++ +..|+...+.++
T Consensus       760 aiGPq-------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg-------pfsVlP~lm~dY~TP-e~nVQnGvLkam  824 (975)
T COG5181         760 AIGPQ-------DVLDILLNNLKVQERQQRVCTSVAISIVAEYCG-------PFSVLPTLMSDYETP-EANVQNGVLKAM  824 (975)
T ss_pred             hcCHH-------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC-------chhhHHHHHhcccCc-hhHHHHhHHHHH
Confidence            43322       455566666655555555444444554443322       124677777777788 888999999988


Q ss_pred             HHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHH-HHHHHHcCCcHHHhhccCCCCHHHHH
Q 012897          276 SNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQ-IKYLVREGCIKPLCDLFVCPDPRIVT  354 (454)
Q Consensus       276 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~-~~~l~~~~~i~~L~~~l~~~~~~v~~  354 (454)
                      +.+.....+.....+ .-+.|.|-+.+.+.|+.-|..|...+.+++.++..-. ...++  +++..|..-+-.+.|.++.
T Consensus       825 ~fmFeyig~~s~dYv-y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~I--HLlNllwpNIle~sPhvi~  901 (975)
T COG5181         825 CFMFEYIGQASLDYV-YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAI--HLLNLLWPNILEPSPHVIQ  901 (975)
T ss_pred             HHHHHHHHHHHHHHH-HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHH--HHHHHhhhhccCCCcHHHH
Confidence            888763222222222 2467788888888999999999999999988652110 00111  1233333334457788888


Q ss_pred             HHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 012897          355 VCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW  419 (454)
Q Consensus       355 ~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~  419 (454)
                      ....++..+...-..                    .-.+.-+++-+=|++..|+++.-...+..+
T Consensus       902 ~~~Eg~e~~~~~lg~--------------------g~~m~Yv~qGLFHPs~~VRk~ywtvyn~my  946 (975)
T COG5181         902 SFDEGMESFATVLGS--------------------GAMMKYVQQGLFHPSSTVRKRYWTVYNIMY  946 (975)
T ss_pred             HHHHHHHHHHHHhcc--------------------HHHHHHHHHhccCchHHHHHHHHHHHhhhh
Confidence            777777766543211                    112344566678888899888777666544

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.90  E-value=6.2e-08  Score=95.20  Aligned_cols=270  Identities=18%  Similarity=0.228  Sum_probs=198.8

Q ss_pred             HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHH
Q 012897           10 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK   89 (454)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~   89 (454)
                      .+-|+.|...-....+.++.++-+       +|.+++.|-++-   =|..|+..|+....-.+-.......-|++|++++
T Consensus       450 FteQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLSQv---HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLK  519 (1387)
T KOG1517|consen  450 FTEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLSQV---HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLK  519 (1387)
T ss_pred             HHHHHHHHHHHHHhccccCCChHh-------cchHHHHHHHHH---HHHHHHHHHHHHhccchhhhhhhhccchHHHHHH
Confidence            344555555555554444333322       555555554433   2667888888888877888888888999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchh--hhhhHHHHHHHHHHhhcCCCCCCChh-hhhc
Q 012897           90 LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER--AKLSMLRNATWTLSNFCRGKPQPPFD-QVRP  166 (454)
Q Consensus        90 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~  166 (454)
                      +|+++-.++|-..+.+.+.|..-++.++..++..++-..+++.+..+  -+++-+..++.+|..++.+.+..+.. ...+
T Consensus       520 LLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~  599 (1387)
T KOG1517|consen  520 LLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGN  599 (1387)
T ss_pred             HhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcccc
Confidence            99999999999999999998877788888888888888888877442  24578899999999999886444333 3466


Q ss_pred             hHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccC----cc
Q 012897          167 ALPALAQLVHSN-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD----DF  241 (454)
Q Consensus       167 ~l~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~----~~  241 (454)
                      .+..++..+.++ .+-++..++-||+.+-.+.+...=.-.+.+..+.|+.+|.++-++||.+|+.+|+.+..+.    ++
T Consensus       600 li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde  679 (1387)
T KOG1517|consen  600 LIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDE  679 (1387)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccch
Confidence            778888888875 6888999999999998877655433455678999999999999999999999999998752    22


Q ss_pred             chhhh------------hccCCh---HHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 012897          242 QTQCI------------ITYGAL---PYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI  290 (454)
Q Consensus       242 ~~~~~------------~~~~~l---~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~  290 (454)
                      .....            ++..+.   -.++..++.. ++-+|.+.+-+|..+..+.........
T Consensus       680 ~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va  742 (1387)
T KOG1517|consen  680 QTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVA  742 (1387)
T ss_pred             hhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence            22111            222222   2566677788 899999999999998876655544433

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.88  E-value=5.4e-08  Score=94.71  Aligned_cols=272  Identities=17%  Similarity=0.169  Sum_probs=163.4

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhh
Q 012897           86 IFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVR  165 (454)
Q Consensus        86 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  165 (454)
                      .|++.+.+++.++|..|+.-|.+=.......-+.-.+...+..++++| .+.+.+|+..|..+++-|+..   .......
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL-~D~ngEVQnlAVKClg~lvsK---vke~~le   84 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLL-EDKNGEVQNLAVKCLGPLVSK---VKEDQLE   84 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHH-hccCcHHHHHHHHHHHHHHhh---chHHHHH
Confidence            677778888899999888766543222111111112233577888888 888999999999999998843   2223334


Q ss_pred             chHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC------CCCcchhhHHHHHhHhhccC
Q 012897          166 PALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH------PSPSVLIPALRTVGNIVTGD  239 (454)
Q Consensus       166 ~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~  239 (454)
                      ..+..|..-+-++....+.-..-.|.....+-+..........+++.+...+..      +...++..++..++.+....
T Consensus        85 ~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~  164 (1233)
T KOG1824|consen   85 TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRF  164 (1233)
T ss_pred             HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhh
Confidence            445555544434444443333223322222211122223333444444444432      33447888888887776543


Q ss_pred             ccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcC-CHHHHHHHHhCCChHHHHHHhhhc-chhhHHHHHHHH
Q 012897          240 DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAI  317 (454)
Q Consensus       240 ~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL  317 (454)
                      ...... ++.+++..++.-+.+. ...+|+.|+.+|+.++.. +.+...     +++..|.+-+... .+...+.-..+|
T Consensus       165 g~ll~~-fh~~il~~l~~ql~s~-R~aVrKkai~~l~~la~~~~~~ly~-----~li~~Ll~~L~~~~q~~~~rt~Iq~l  237 (1233)
T KOG1824|consen  165 GTLLPN-FHLSILKCLLPQLQSP-RLAVRKKAITALGHLASSCNRDLYV-----ELIEHLLKGLSNRTQMSATRTYIQCL  237 (1233)
T ss_pred             cccCcc-hHHHHHHHHhhcccCh-HHHHHHHHHHHHHHHHHhcCHHHHH-----HHHHHHHhccCCCCchHHHHHHHHHH
Confidence            322222 4557777888888888 889999999999999973 433332     3444555555443 344444555566


Q ss_pred             HHhcCCCCHHHHHHHHHcCCcHHHhhcc---CCCCHHHHHHHHHHHHHHHHhhhhh
Q 012897          318 SNATSGGTHEQIKYLVREGCIKPLCDLF---VCPDPRIVTVCLEGLENILKVGEAE  370 (454)
Q Consensus       318 ~~l~~~~~~~~~~~l~~~~~i~~L~~~l---~~~~~~v~~~al~~L~~l~~~~~~~  370 (454)
                      +.++.....+....+  ...++.+.++.   +..+.++++.+++++..++..++.+
T Consensus       238 ~~i~r~ag~r~~~h~--~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~e  291 (1233)
T KOG1824|consen  238 AAICRQAGHRFGSHL--DKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKE  291 (1233)
T ss_pred             HHHHHHhcchhhccc--chhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhh
Confidence            666654333322221  23577777777   7788899999999999999988764

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.88  E-value=1e-07  Score=87.80  Aligned_cols=322  Identities=16%  Similarity=0.096  Sum_probs=204.1

Q ss_pred             HHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 012897           36 IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR  115 (454)
Q Consensus        36 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  115 (454)
                      .-.+++++.+.++.+++ ..+|..|+..+.|++.. ...........+...+.++..+.+..++.. ...+-.+..+...
T Consensus        81 Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv-~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikdIVt  157 (675)
T KOG0212|consen   81 YLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKV-AKGEVLVYFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKDIVT  157 (675)
T ss_pred             HHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHH-hccCcccchHHHHHHHHHHhcCCccccccH-HHHHHHHHHHhcc
Confidence            44678999999999999 89999999999999972 222222223345666777776666666543 3333333221111


Q ss_pred             hHH-HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 012897          116 CRD-LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS  194 (454)
Q Consensus       116 ~~~-~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~  194 (454)
                      -+. .+.-.+.++.+-..+ ...++..+...+.-|..|-..++..-..+...+++-|..+|.+++++++..+=.++.++-
T Consensus       158 e~~~tFsL~~~ipLL~eri-y~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL  236 (675)
T KOG0212|consen  158 ESASTFSLPEFIPLLRERI-YVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFL  236 (675)
T ss_pred             ccccccCHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence            111 111112234344444 455788888888877777665443444456788999999999999999876666665543


Q ss_pred             c---CChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHH
Q 012897          195 D---GTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA  271 (454)
Q Consensus       195 ~---~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a  271 (454)
                      .   +++..   +-..+.++.++..+.++++.++..|+.-+..+..-.+... ...-.|++..+++++.+.+...++..+
T Consensus       237 ~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~~a  312 (675)
T KOG0212|consen  237 AEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKEYA  312 (675)
T ss_pred             HHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHHHH
Confidence            2   22211   1123577888889999999999999888887776544332 233457788888888777233455444


Q ss_pred             HHHHHHHhc--CCHHHHHHHHh-CCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCC
Q 012897          272 CWTISNITA--GNRDQIQAVID-AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP  348 (454)
Q Consensus       272 ~~~L~nl~~--~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~  348 (454)
                      ...-..+..  +++..... ++ ..+++.+...+.++..+.|..++.-+..+-...+.+...  ........|..-++++
T Consensus       313 ~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~--h~~~if~tLL~tLsd~  389 (675)
T KOG0212|consen  313 QMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLV--HNDSIFLTLLKTLSDR  389 (675)
T ss_pred             HHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhh--hccHHHHHHHHhhcCc
Confidence            433222221  11211111 22 236777888888888899998888887776643322211  2345678888889999


Q ss_pred             CHHHHHHHHHHHHHHHHhhh
Q 012897          349 DPRIVTVCLEGLENILKVGE  368 (454)
Q Consensus       349 ~~~v~~~al~~L~~l~~~~~  368 (454)
                      +.+|+..++..+.+++....
T Consensus       390 sd~vvl~~L~lla~i~~s~~  409 (675)
T KOG0212|consen  390 SDEVVLLALSLLASICSSSN  409 (675)
T ss_pred             hhHHHHHHHHHHHHHhcCcc
Confidence            99999999999999987544

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.86  E-value=1e-06  Score=83.68  Aligned_cols=275  Identities=15%  Similarity=0.156  Sum_probs=189.0

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 012897           39 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD  118 (454)
Q Consensus        39 ~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  118 (454)
                      ++-+-++.+|++.. |-+|..|+.++..+...-|+..+     ..+|.|..-|.++++.++..|+.+++.|++.+|...-
T Consensus       144 DLa~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL  217 (877)
T KOG1059|consen  144 DLADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL  217 (877)
T ss_pred             HHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence            34556778889988 99999999999999875555443     3589999999999999999999999999988876422


Q ss_pred             HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCC-hhHHHHHHHHHH--Hhcc
Q 012897          119 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSND-EEVLTDACWALS--YLSD  195 (454)
Q Consensus       119 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~-~~v~~~a~~~L~--~l~~  195 (454)
                      .     .-|.+.+++..+.+.-+....+..++.|+-..|    ..-..+++.+..++++.. ..+...++.++.  +++.
T Consensus       218 ~-----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP----RLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~  288 (877)
T KOG1059|consen  218 Q-----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP----RLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSS  288 (877)
T ss_pred             c-----ccHHHHHHHhccCCCeehHHHHHHHhhccccCc----hhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence            2     356777888777788888888888888875532    233567888888888764 344555555543  2332


Q ss_pred             CChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHH
Q 012897          196 GTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI  275 (454)
Q Consensus       196 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L  275 (454)
                      ..++... .+. -.++.|-.++.+.++.++.-++.+++.+....+...+     ..-..++.+|.+. ++.+|..|...+
T Consensus       289 g~~d~~a-siq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq-----a~kdlIlrcL~Dk-D~SIRlrALdLl  360 (877)
T KOG1059|consen  289 GMSDHSA-SIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ-----AHKDLILRCLDDK-DESIRLRALDLL  360 (877)
T ss_pred             CCCCcHH-HHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH-----HhHHHHHHHhccC-CchhHHHHHHHH
Confidence            2211111 111 2466777788899999999999999999976664443     2346789999999 999999999998


Q ss_pred             HHHhcCCHHHHHHHHhCCChHHHHHHhhhc-chhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhcc
Q 012897          276 SNITAGNRDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLF  345 (454)
Q Consensus       276 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l  345 (454)
                      .-+..  .+++..     ++..|+..+... ....|...+.-+..+++..+...+.-|.+  ++..|+++.
T Consensus       361 ~gmVs--kkNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEW--YlsVlveLa  422 (877)
T KOG1059|consen  361 YGMVS--KKNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEW--YLSVLVELA  422 (877)
T ss_pred             HHHhh--hhhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHH--HHHHHHHHH
Confidence            87764  333433     344455555443 34667677776767766554443333322  344444443

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.84  E-value=1.4e-06  Score=81.93  Aligned_cols=341  Identities=18%  Similarity=0.164  Sum_probs=219.2

Q ss_pred             ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 012897            3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG   82 (454)
Q Consensus         3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g   82 (454)
                      +.+....+.+|.....++..+...........     +.+.+.+++...+ ..-+..+.+.+..+..+  .....+.+.+
T Consensus       103 ~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~-----~l~~l~~ll~~~~-~~~~~~aa~~~ag~v~g--~~i~~~~~~~  174 (569)
T KOG1242|consen  103 EELDTPSKSVQRAVSTCLPPLVVLSKGLSGEY-----VLELLLELLTSTK-IAERAGAAYGLAGLVNG--LGIESLKEFG  174 (569)
T ss_pred             HhcCCCcHHHHHHHHHHhhhHHHHhhccCHHH-----HHHHHHHHhcccc-HHHHhhhhHHHHHHHcC--cHHhhhhhhh
Confidence            34556678888888888887765542333322     4667888888777 67788888888888863  3445566678


Q ss_pred             ChHHHHHhhCCCCHHH-HHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897           83 AVPIFVKLLASPSDDV-REQAVWALGNVAGD-SPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP  160 (454)
Q Consensus        83 ~i~~L~~lL~~~~~~v-~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (454)
                      ++..+.....+..... |+.++.+....+.. .+.....+..  .++.++... .+....++..+..+...+...-+   
T Consensus       175 ~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~--~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~~~~---  248 (569)
T KOG1242|consen  175 FLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVP--ILPSILTNF-GDKINKVREAAVEAAKAIMRCLS---  248 (569)
T ss_pred             HHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHh--hHHHHHHHh-hccchhhhHHHHHHHHHHHHhcC---
Confidence            8999999888754333 33333333322211 1111111111  244444444 45677888888888777765431   


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897          161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD  240 (454)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  240 (454)
                      ......++|.++.-+.........+++..++.++...+.+.. ..-..++|.+...|.+..+++|.++..+|..++..-+
T Consensus       249 ~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svid  327 (569)
T KOG1242|consen  249 AYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID  327 (569)
T ss_pred             cchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc
Confidence            222344566665555555778888999999999888776655 4555899999999999999999999999999886332


Q ss_pred             cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc-C--CHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHH
Q 012897          241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-G--NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAI  317 (454)
Q Consensus       241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~-~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL  317 (454)
                      . ..  + ..+++.|++.+.++ ...+. .+...|+.-.. .  .+...     .-++|.|.+-+...+..+++.++.++
T Consensus       328 N-~d--I-~~~ip~Lld~l~dp-~~~~~-e~~~~L~~ttFV~~V~~psL-----almvpiL~R~l~eRst~~kr~t~~Ii  396 (569)
T KOG1242|consen  328 N-PD--I-QKIIPTLLDALADP-SCYTP-ECLDSLGATTFVAEVDAPSL-----ALMVPILKRGLAERSTSIKRKTAIII  396 (569)
T ss_pred             c-HH--H-HHHHHHHHHHhcCc-ccchH-HHHHhhcceeeeeeecchhH-----HHHHHHHHHHHhhccchhhhhHHHHH
Confidence            1 11  1 14678888888877 43222 22222221111 0  11100     12456666666667888999999999


Q ss_pred             HHhcCCC-CHH-HHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhh
Q 012897          318 SNATSGG-THE-QIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEK  371 (454)
Q Consensus       318 ~~l~~~~-~~~-~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~  371 (454)
                      .|++.-- ++. ..+++-+  +++.|-..+.+..|++|..+..+|..+.+......
T Consensus       397 dNm~~LveDp~~lapfl~~--Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~  450 (569)
T KOG1242|consen  397 DNMCKLVEDPKDLAPFLPS--LLPGLKENLDDAVPEVRAVAARALGALLERLGEVS  450 (569)
T ss_pred             HHHHHhhcCHHHHhhhHHH--HhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhc
Confidence            9998854 232 2333333  67778788888899999999999988888655543

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.84  E-value=3.8e-06  Score=79.11  Aligned_cols=344  Identities=15%  Similarity=0.103  Sum_probs=223.1

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 012897           40 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL  119 (454)
Q Consensus        40 ~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~  119 (454)
                      ++..+..-+..+. +.+|.....+|..+.........    ..+.+.+.+++......-+..+.+.++.+..+..  ...
T Consensus        97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~~----~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~  169 (569)
T KOG1242|consen   97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLSG----EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IES  169 (569)
T ss_pred             HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccCH----HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhh
Confidence            4667777778888 88988888888777652211111    1346777788887778888888888888876543  234


Q ss_pred             HHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 012897          120 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND  199 (454)
Q Consensus       120 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~  199 (454)
                      +.+.+.+..+-..+.+..+..-++.+..+....+..-..........++|.++..+.+..+.++..+..+...+...-+.
T Consensus       170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~  249 (569)
T KOG1242|consen  170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA  249 (569)
T ss_pred             hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence            44556677777777433333333334444444443333333444556777777778788899999888887766544332


Q ss_pred             HHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHh
Q 012897          200 KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT  279 (454)
Q Consensus       200 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~  279 (454)
                      ..-   + .+++.++.-+....+.....++..++.++...+.... ..-..++|.+.+.|.+. .+++|+.+..++.+++
T Consensus       250 ~aV---K-~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~~  323 (569)
T KOG1242|consen  250 YAV---K-LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDT-KPEVRKAGIETLLKFG  323 (569)
T ss_pred             chh---h-HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence            211   1 2344444444444788889999999999987775554 33448999999999999 9999999999999998


Q ss_pred             c--CCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCC--CHHHHHHHHHcCCcHHHhhccCCCCHHHHHH
Q 012897          280 A--GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG--THEQIKYLVREGCIKPLCDLFVCPDPRIVTV  355 (454)
Q Consensus       280 ~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~  355 (454)
                      .  .+++ +     ..++|.|++.+.++...+. .+...|+.-....  ++.....     .++.|..-+...+..+...
T Consensus       324 svidN~d-I-----~~~ip~Lld~l~dp~~~~~-e~~~~L~~ttFV~~V~~psLal-----mvpiL~R~l~eRst~~kr~  391 (569)
T KOG1242|consen  324 SVIDNPD-I-----QKIIPTLLDALADPSCYTP-ECLDSLGATTFVAEVDAPSLAL-----MVPILKRGLAERSTSIKRK  391 (569)
T ss_pred             HhhccHH-H-----HHHHHHHHHHhcCcccchH-HHHHhhcceeeeeeecchhHHH-----HHHHHHHHHhhccchhhhh
Confidence            7  3444 2     2367888888887653443 2333333221111  1111111     3666667777788888899


Q ss_pred             HHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 012897          356 CLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL  420 (454)
Q Consensus       356 al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  420 (454)
                      +...+.|+.+.-+..+       ....|...     .++.+........|+++.-+.+.+..+..
T Consensus       392 t~~IidNm~~LveDp~-------~lapfl~~-----Llp~lk~~~~d~~PEvR~vaarAL~~l~e  444 (569)
T KOG1242|consen  392 TAIIIDNMCKLVEDPK-------DLAPFLPS-----LLPGLKENLDDAVPEVRAVAARALGALLE  444 (569)
T ss_pred             HHHHHHHHHHhhcCHH-------HHhhhHHH-----HhhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence            9999999988764433       12223332     25677777777789999888888855554

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.79  E-value=5.4e-08  Score=89.10  Aligned_cols=307  Identities=13%  Similarity=0.096  Sum_probs=196.0

Q ss_pred             HHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC-CCCChhhhhchHHHHHHhhcCC
Q 012897          100 EQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSN  178 (454)
Q Consensus       100 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~  178 (454)
                      .+++.+|..++++-...|.-+.+..+.+.|+++| +.++..+...+...++++.-.. +........+++..+++++.+.
T Consensus       407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK  485 (743)
T COG5369         407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK  485 (743)
T ss_pred             HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence            3445555666665556677777888899999999 5566556666677777776554 4444556688999999999999


Q ss_pred             ChhHHHHHHHHHHHhccCChHHHH-HHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCcc---chhhhhccC----
Q 012897          179 DEEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF---QTQCIITYG----  250 (454)
Q Consensus       179 ~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~---~~~~~~~~~----  250 (454)
                      |..++....|.+..+..+.+...+ .++..-++..++.+..++...++.+++.++.|+...+..   ....+++..    
T Consensus       486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y  565 (743)
T COG5369         486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY  565 (743)
T ss_pred             hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence            999999999999999877654322 345557789999999999999999999999999874332   222222221    


Q ss_pred             ChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHH-hCCChHHHHHHhhhc-----------chhhHHHHHHHHH
Q 012897          251 ALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI-DAGLVGPLVNLLQNA-----------EFDIKKEAAWAIS  318 (454)
Q Consensus       251 ~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~-----------~~~v~~~a~~aL~  318 (454)
                      ..+.+++.+... +|-.-...++.|.+++..+......+. +..++..+.+.+...           ...+-..-.....
T Consensus       566 lfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v  644 (743)
T COG5369         566 LFKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIV  644 (743)
T ss_pred             HHHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeee
Confidence            446677777777 666666778888888875444333333 234455454444321           1111111222222


Q ss_pred             HhcCCCCHHHHHHHHHcCCc--HHHhhcc---CCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccH
Q 012897          319 NATSGGTHEQIKYLVREGCI--KPLCDLF---VCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGL  393 (454)
Q Consensus       319 ~l~~~~~~~~~~~l~~~~~i--~~L~~~l---~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  393 (454)
                      ++....+. ...     +..  +.+-.+=   ..++.+.-.+..|.+.++....+..+...    ..-+.+..+.+.|.-
T Consensus       645 ~l~e~~d~-f~r-----~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtr----atveR~~iL~~~G~~  714 (743)
T COG5369         645 NLSENSDK-FKR-----LVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTR----ATVERIQILCANGIR  714 (743)
T ss_pred             cccccccc-ccc-----ceecCCCccccccccCCCchhhhhccceEEEecccCccCCccch----hhHHHHHHHHHccHH
Confidence            33221111 000     111  2221111   12344566677777777654333222110    222467889999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHh
Q 012897          394 EKIENLQSHDNNEIYEKAVKILETY  418 (454)
Q Consensus       394 ~~l~~l~~~~~~~v~~~a~~~l~~~  418 (454)
                      +-++.+++++++.|++++..+++.+
T Consensus       715 e~l~k~q~~~Sl~vrek~~taL~~l  739 (743)
T COG5369         715 EWLVKIQAKDSLIVREKIGTALENL  739 (743)
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHhh
Confidence            9999999999999999999988754

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.79  E-value=1.3e-07  Score=86.67  Aligned_cols=286  Identities=16%  Similarity=0.226  Sum_probs=192.6

Q ss_pred             HHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 012897           32 IEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAG  111 (454)
Q Consensus        32 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~  111 (454)
                      +.-+.+..+.+.|+++|..++ ..+.--+...++|.....+..+..+++.|++..+++++.+.+..+|....|++.++..
T Consensus       424 RTgL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmy  502 (743)
T COG5369         424 RTGLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMY  502 (743)
T ss_pred             HhhccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhh
Confidence            344556778899999999988 7888888889999888788889999999999999999999999999999999999985


Q ss_pred             CChh-hHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCC--CChhh------hhchHHHHHHhhcCCChhH
Q 012897          112 DSPR-CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ--PPFDQ------VRPALPALAQLVHSNDEEV  182 (454)
Q Consensus       112 ~~~~-~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~------~~~~l~~l~~ll~~~~~~v  182 (454)
                      ++.+ .+-..+..-++..++.+. .+++-.++.+++.+|.|++.+...  .....      ..-+...++..++..+|-.
T Consensus       503 ncq~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~  581 (743)
T COG5369         503 NCQKNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPME  581 (743)
T ss_pred             cCcchhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchh
Confidence            5443 344566667789999998 788889999999999999875421  11111      1336677888888888888


Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhc----CC-------CCCcchhhHHHHHhHhhccCccchhhhhccC
Q 012897          183 LTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELL----GH-------PSPSVLIPALRTVGNIVTGDDFQTQCIITYG  250 (454)
Q Consensus       183 ~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll----~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  250 (454)
                      ....+..|.+++..++.....+.+. +.+..+...|    ..       ....+...-.....++....+...+...-..
T Consensus       582 i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~p  661 (743)
T COG5369         582 ILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTTP  661 (743)
T ss_pred             hhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecCC
Confidence            8888999999887666554544443 3333333333    11       1122333334444444443332222221111


Q ss_pred             ChHHHHHhhcCCcchhHHHHHHHHHHHHhc---C------CHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHh
Q 012897          251 ALPYLLGLLTHSHKKSIKKEACWTISNITA---G------NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA  320 (454)
Q Consensus       251 ~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~---~------~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  320 (454)
                      -.... +-=....+.+.-.+..|.+.|+.-   +      ..+.++.+.+.|+-+.+......+++.||+.+-.+|.++
T Consensus       662 ~~D~~-~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l  739 (743)
T COG5369         662 HLDNM-KKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL  739 (743)
T ss_pred             Ccccc-ccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence            11100 000111144566677788777653   1      124555666777777777777777889999999999887

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.79  E-value=8.5e-07  Score=81.95  Aligned_cols=345  Identities=12%  Similarity=0.084  Sum_probs=212.3

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH-HHHh
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK-VVID   80 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~   80 (454)
                      +.++++.|..+|..|+..+-+++...+.+..  ..-..+...+.++..+++ ..++.. ++.+-.+..+-.-.+. .+-=
T Consensus        90 ~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~--~~Fn~iFdvL~klsaDsd-~~V~~~-aeLLdRLikdIVte~~~tFsL  165 (675)
T KOG0212|consen   90 LNCFSDQDSQVRYYACESLYNIAKVAKGEVL--VYFNEIFDVLCKLSADSD-QNVRGG-AELLDRLIKDIVTESASTFSL  165 (675)
T ss_pred             HHhccCccceeeeHhHHHHHHHHHHhccCcc--cchHHHHHHHHHHhcCCc-cccccH-HHHHHHHHHHhccccccccCH
Confidence            4567888999999999999888766422222  222346777888888777 666543 3444333331111111 2222


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH-hcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC-CC
Q 012897           81 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVL-SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQ  158 (454)
Q Consensus        81 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~  158 (454)
                      .+++|.|-.-+...++..|...+.-|..+-. .|. .+.+. -...++.|.++| .+++.+++..+-.++.++...- ..
T Consensus       166 ~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds-~P~-~~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL~eI~s~  242 (675)
T KOG0212|consen  166 PEFIPLLRERIYVINPMTRQFLVSWLYVLDS-VPD-LEMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFLAEIRSS  242 (675)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHhc-CCc-HHHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHhcC
Confidence            3456666666666788888888777777632 222 22221 123567778888 7778888887777777766543 22


Q ss_pred             CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCc-chhhHHHH---HhH
Q 012897          159 PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPS-VLIPALRT---VGN  234 (454)
Q Consensus       159 ~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~-v~~~a~~~---L~~  234 (454)
                      +........++.++.-+.++++.++..|+.-+..+..-.+.. -...-++++..++.++.+.++. ++..+...   +..
T Consensus       243 P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~  321 (675)
T KOG0212|consen  243 PSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLK  321 (675)
T ss_pred             ccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHH
Confidence            222244677889999999999999999988887777655433 2234457888888888877663 44433322   222


Q ss_pred             hhccCccchhhhhcc-CChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHH
Q 012897          235 IVTGDDFQTQCIITY-GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEA  313 (454)
Q Consensus       235 l~~~~~~~~~~~~~~-~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  313 (454)
                      ++. .+...+. ++. .++..+.+.+.+. ..+.|..+..-+..+-...+... ......+.+.|+.-+.+.+.+|...+
T Consensus       322 l~s-~~~~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLsd~sd~vvl~~  397 (675)
T KOG0212|consen  322 LVS-SERLKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQL-LVHNDSIFLTLLKTLSDRSDEVVLLA  397 (675)
T ss_pred             HHh-hhhhccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchh-hhhccHHHHHHHHhhcCchhHHHHHH
Confidence            222 1111111 332 4677888888888 88899888766666655444432 22246788999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHH
Q 012897          314 AWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENI  363 (454)
Q Consensus       314 ~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l  363 (454)
                      +..+.+++..........     ++..|.+++..+..-+...+--.+..+
T Consensus       398 L~lla~i~~s~~~~~~~~-----fl~sLL~~f~e~~~~l~~Rg~lIIRql  442 (675)
T KOG0212|consen  398 LSLLASICSSSNSPNLRK-----FLLSLLEMFKEDTKLLEVRGNLIIRQL  442 (675)
T ss_pred             HHHHHHHhcCcccccHHH-----HHHHHHHHHhhhhHHHHhhhhHHHHHH
Confidence            999999998654322211     344455555544333333333333333

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.78  E-value=3.5e-06  Score=80.96  Aligned_cols=318  Identities=18%  Similarity=0.195  Sum_probs=196.6

Q ss_pred             ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 012897            3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG   82 (454)
Q Consensus         3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g   82 (454)
                      +.|+++|+.+|-.|++.|..+--.        ++..=++-.+-++..++. +.+|..|+.++-++-.-.++....+    
T Consensus       115 k~L~DpN~LiRasALRvlSsIRvp--------~IaPI~llAIk~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~qL----  181 (968)
T KOG1060|consen  115 KALKDPNQLIRASALRVLSSIRVP--------MIAPIMLLAIKKAVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQL----  181 (968)
T ss_pred             hhhcCCcHHHHHHHHHHHHhcchh--------hHHHHHHHHHHHHhcCCc-HHHHHHHHHhhHHHhcCChhhHHHH----
Confidence            356778888887777776554211        111112334456666777 8999999999999888777766644    


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC-CCC--
Q 012897           83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQP--  159 (454)
Q Consensus        83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~--  159 (454)
                       ++.+-.+|.+.++.+.-.|+.++-.+|-+.-    .++ .+-...+.+++ .+-++--+...+..|..-++.. +.+  
T Consensus       182 -~e~I~~LLaD~splVvgsAv~AF~evCPerl----dLI-HknyrklC~ll-~dvdeWgQvvlI~mL~RYAR~~l~~P~~  254 (968)
T KOG1060|consen  182 -EEVIKKLLADRSPLVVGSAVMAFEEVCPERL----DLI-HKNYRKLCRLL-PDVDEWGQVVLINMLTRYARHQLPDPTV  254 (968)
T ss_pred             -HHHHHHHhcCCCCcchhHHHHHHHHhchhHH----HHh-hHHHHHHHhhc-cchhhhhHHHHHHHHHHHHHhcCCCccc
Confidence             5667778888889998888888888874322    111 12245555555 3333333333444444334332 111  


Q ss_pred             -----------------------C---hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 012897          160 -----------------------P---FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL  213 (454)
Q Consensus       160 -----------------------~---~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L  213 (454)
                                             .   ..-..-+++..-.+|.+.++.+..+++.+...++-..  ...     .++..|
T Consensus       255 ~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~--~~~-----~i~kaL  327 (968)
T KOG1060|consen  255 VDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN--QVT-----KIAKAL  327 (968)
T ss_pred             cccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH--HHH-----HHHHHH
Confidence                                   0   0111334555566788899999999999999988443  112     456677


Q ss_pred             HHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhc-CCcchhHHHHHHHHHHHHhcCCHHHHHHHHhC
Q 012897          214 VELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT-HSHKKSIKKEACWTISNITAGNRDQIQAVIDA  292 (454)
Q Consensus       214 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~  292 (454)
                      +.+|.+ +..++.-.+..+..++...+...        .|.+-.++- +.....++..=..+|.+++....  +     .
T Consensus       328 vrLLrs-~~~vqyvvL~nIa~~s~~~~~lF--------~P~lKsFfv~ssDp~~vk~lKleiLs~La~esn--i-----~  391 (968)
T KOG1060|consen  328 VRLLRS-NREVQYVVLQNIATISIKRPTLF--------EPHLKSFFVRSSDPTQVKILKLEILSNLANESN--I-----S  391 (968)
T ss_pred             HHHHhc-CCcchhhhHHHHHHHHhcchhhh--------hhhhhceEeecCCHHHHHHHHHHHHHHHhhhcc--H-----H
Confidence            777754 45678888888888886544222        133333332 22133455556667777775321  1     1


Q ss_pred             CChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhh
Q 012897          293 GLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEA  369 (454)
Q Consensus       293 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~  369 (454)
                      .+++.+...+.+.+.++...+..+|+.++.....      +...++.-|+.++++.+..|...++..|..++.....
T Consensus       392 ~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s------v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~  462 (968)
T KOG1060|consen  392 EILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS------VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPA  462 (968)
T ss_pred             HHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc------hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChH
Confidence            2455667777777767888888888888764321      2334677888888888888888888888888776554

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.77  E-value=3e-07  Score=83.05  Aligned_cols=273  Identities=17%  Similarity=0.183  Sum_probs=181.8

Q ss_pred             hHHHHhCCChHHHHHhhCCCCH--HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhh
Q 012897           75 TKVVIDHGAVPIFVKLLASPSD--DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF  152 (454)
Q Consensus        75 ~~~~~~~g~i~~L~~lL~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l  152 (454)
                      .+.+...|++..|+.++..++.  .+|..|.+.|-.+..  .++++.+...| +..++.+.......+..+..+.+|.++
T Consensus       173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m  249 (832)
T KOG3678|consen  173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM  249 (832)
T ss_pred             hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence            3456667999999999999774  569999999998853  24677777776 666666665566788999999999999


Q ss_pred             cCCCCCC-ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHH
Q 012897          153 CRGKPQP-PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALR  230 (454)
Q Consensus       153 ~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~  230 (454)
                      ..+.+.. ......+++..++-..+..+|.+..++..+|+|++-+ .......+++..+.+.|..+-.+.++-+|..||.
T Consensus       250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl  329 (832)
T KOG3678|consen  250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL  329 (832)
T ss_pred             hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence            9987443 3345578888888888999999999999999998854 3445567888888899999888888889999999


Q ss_pred             HHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhH
Q 012897          231 TVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIK  310 (454)
Q Consensus       231 ~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  310 (454)
                      +.+.++...+ .-..+-+.|.+..+-.++.+. ++..-..   --...+.+.        ....++.|+.++++...+.+
T Consensus       330 AV~vlat~KE-~E~~VrkS~TlaLVEPlva~~-DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~R~EAq  396 (832)
T KOG3678|consen  330 AVAVLATNKE-VEREVRKSGTLALVEPLVASL-DPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSNRLEAQ  396 (832)
T ss_pred             HHhhhhhhhh-hhHHHhhccchhhhhhhhhcc-Ccchhhh---hhhhhhccC--------ChHHHHHhhhhhhcchhhhh
Confidence            9999987544 333455667666666666555 4421110   111111111        02245667777776555554


Q ss_pred             HHHHHHHHHhcCCCCH-HHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHH
Q 012897          311 KEAAWAISNATSGGTH-EQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENI  363 (454)
Q Consensus       311 ~~a~~aL~~l~~~~~~-~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l  363 (454)
                      ..++.-++-=+..... ...+.+.+-|.|..|-++.+++|.--...+-.+|.-+
T Consensus       397 ~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi  450 (832)
T KOG3678|consen  397 CIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI  450 (832)
T ss_pred             hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence            4333333222111111 1223445568888888888876654334444444443

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.76  E-value=5.5e-07  Score=81.38  Aligned_cols=274  Identities=17%  Similarity=0.159  Sum_probs=186.8

Q ss_pred             HHHHHHcCCHHHHHHhhcCCCC-hhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHh
Q 012897           32 IEEVIQSGVVPRFVEFLMREDY-PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNV  109 (454)
Q Consensus        32 ~~~~~~~~~l~~L~~lL~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l  109 (454)
                      .+.+...|.+..|++++..++. ..++.+|.+.|-.+..  .++++.+...| ...++.+-+. ..++..+..+.+|.++
T Consensus       173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m  249 (832)
T KOG3678|consen  173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM  249 (832)
T ss_pred             hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence            3445567899999999999872 3469999999999885  67888888877 5555555543 5688999999999999


Q ss_pred             hCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC--CCCChhhhhchHHHHHHhhcCCChhHHHHHH
Q 012897          110 AGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK--PQPPFDQVRPALPALAQLVHSNDEEVLTDAC  187 (454)
Q Consensus       110 ~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~  187 (454)
                      ..++.+....+++.|++..++--. ...++.+.+.+..+|.|++.+.  .....+.....-.-|+.+-.+.|+-++.+||
T Consensus       250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC  328 (832)
T KOG3678|consen  250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC  328 (832)
T ss_pred             hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence            999988889999999999888777 5567999999999999998875  2222333344555666666677888999999


Q ss_pred             HHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhH
Q 012897          188 WALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSI  267 (454)
Q Consensus       188 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v  267 (454)
                      .+.+.++.+.. .-..+.++|.+..+-.++..-++.-          +++......+ --....+..|+.+|++. ..+.
T Consensus       329 lAV~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP~~----------FARD~hd~aQ-G~~~d~LqRLvPlLdS~-R~EA  395 (832)
T KOG3678|consen  329 LAVAVLATNKE-VEREVRKSGTLALVEPLVASLDPGR----------FARDAHDYAQ-GRGPDDLQRLVPLLDSN-RLEA  395 (832)
T ss_pred             HHHhhhhhhhh-hhHHHhhccchhhhhhhhhccCcch----------hhhhhhhhhc-cCChHHHHHhhhhhhcc-hhhh
Confidence            99999987654 3344556666665555555444321          1111110110 11124577899999877 5555


Q ss_pred             HHHHHHHHHHHhc-CCHHH-HHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897          268 KKEACWTISNITA-GNRDQ-IQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS  322 (454)
Q Consensus       268 ~~~a~~~L~nl~~-~~~~~-~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  322 (454)
                      +..+++-++.=+. .+... .+.+.+-|.|..|.++..+.+.-....|..+|.-+-.
T Consensus       396 q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE  452 (832)
T KOG3678|consen  396 QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE  452 (832)
T ss_pred             hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence            5555544443322 12222 2234467889999999988776666666666665543

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.75  E-value=4.6e-06  Score=76.82  Aligned_cols=334  Identities=16%  Similarity=0.070  Sum_probs=206.2

Q ss_pred             HHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchh-hhhhHHH
Q 012897           65 TNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER-AKLSMLR  143 (454)
Q Consensus        65 ~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~  143 (454)
                      ..+....+..+..+.-....+.+..++-+++.++|..+.+++..+..+.. .-..+...+.-..++.-+..+ .+..-+.
T Consensus         8 v~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~-~l~~~~~l~id~~ii~SL~~~~~~~~ER~   86 (371)
T PF14664_consen    8 VDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEE-SLQILLKLHIDIFIIRSLDRDNKNDVERE   86 (371)
T ss_pred             HHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHH-HHHHHHHcCCchhhHhhhcccCCChHHHH
Confidence            33333344444444333445555555555559999999999999987654 445556666555566666433 3556688


Q ss_pred             HHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCc
Q 012897          144 NATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPS  223 (454)
Q Consensus       144 ~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~  223 (454)
                      +|+..++.+..... .......+++..++.+..+.++..+..|+.+|+.++-.++   +.+...|++..+...+.++..+
T Consensus        87 QALkliR~~l~~~~-~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~~  162 (371)
T PF14664_consen   87 QALKLIRAFLEIKK-GPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSFS  162 (371)
T ss_pred             HHHHHHHHHHHhcC-CcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccHh
Confidence            99999998887642 2223457889999999999999999999999999998777   4477889999999999887666


Q ss_pred             chhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCC------cch--hHHHHHHHHHHHHhcCCHHHHHHHHh-CCC
Q 012897          224 VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS------HKK--SIKKEACWTISNITAGNRDQIQAVID-AGL  294 (454)
Q Consensus       224 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~------~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~  294 (454)
                      +....+.++-.+..... .++.+...--+..++.-+.+.      .+.  +.-..+..++..+...=+.......+ ...
T Consensus       163 ~~~~l~~~lL~lLd~p~-tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~  241 (371)
T PF14664_consen  163 ISESLLDTLLYLLDSPR-TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRG  241 (371)
T ss_pred             HHHHHHHHHHHHhCCcc-hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchH
Confidence            88888888888886443 444444333344444444222      122  23344455555554422221111111 247


Q ss_pred             hHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHH------cCCc---HHHhhccCCCC---HHHHHHHHHHHHH
Q 012897          295 VGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVR------EGCI---KPLCDLFVCPD---PRIVTVCLEGLEN  362 (454)
Q Consensus       295 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~------~~~i---~~L~~~l~~~~---~~v~~~al~~L~~  362 (454)
                      +..|+..+..+++++|......+..+..-..+.....+..      .+-.   ..+..-.....   |.....-...+.+
T Consensus       242 lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~  321 (371)
T PF14664_consen  242 LKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNH  321 (371)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHH
Confidence            8889999999999999999999999988654432211111      0111   00000000000   0000000011111


Q ss_pred             HHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCC-CHHHHHHHHHHHHHhcC
Q 012897          363 ILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHD-NNEIYEKAVKILETYWL  420 (454)
Q Consensus       363 l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~-~~~v~~~a~~~l~~~~~  420 (454)
                      .                ..-....|.+.|.++.|.++.... ++.+..+|.-++..++.
T Consensus       322 y----------------~aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~  364 (371)
T PF14664_consen  322 Y----------------LALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELLH  364 (371)
T ss_pred             H----------------HHHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            1                111345678899999999997666 89999999999887763

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.72  E-value=4.4e-07  Score=89.43  Aligned_cols=228  Identities=16%  Similarity=0.204  Sum_probs=181.1

Q ss_pred             HHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhC
Q 012897           13 QLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA   92 (454)
Q Consensus        13 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~   92 (454)
                      |+.|+..|..++.-. +..+..-..-|++|.++++|+++. .+++..-+.+..++..-++.+...+++.++-.++++.|.
T Consensus       487 RlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~  564 (1387)
T KOG1517|consen  487 RLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLD  564 (1387)
T ss_pred             HHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEec
Confidence            566777777777665 667777788899999999999999 899999999999988878999999999999999999998


Q ss_pred             C-C--CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChh-hhhchH
Q 012897           93 S-P--SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD-QVRPAL  168 (454)
Q Consensus        93 ~-~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~l  168 (454)
                      . +  +++-|..++.+|+.++.+-+-.++...+.+.+...+..+..++.+-++..++-+|+.|-.+.+..+.. ...+..
T Consensus       565 ~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah  644 (1387)
T KOG1517|consen  565 PSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH  644 (1387)
T ss_pred             CcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence            6 3  36899999999999998877777888888888888888855456778889999999999887444443 446778


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHhccC----ChHHHHHH------------HHhCcHH----HHHHhcCCCCCcchhhH
Q 012897          169 PALAQLVHSNDEEVLTDACWALSYLSDG----TNDKIQAV------------IEAGVCP----RLVELLGHPSPSVLIPA  228 (454)
Q Consensus       169 ~~l~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~~~~~------------~~~~~i~----~L~~ll~~~~~~v~~~a  228 (454)
                      ..|..+|.++-++||.+|+.+|+.+..+    .+++....            .+ +.+.    .++.++++..+-++.+.
T Consensus       645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E-~~i~~~~~~ll~~vsdgsplvr~ev  723 (1387)
T KOG1517|consen  645 EKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIE-DLIIKGLMSLLALVSDGSPLVRTEV  723 (1387)
T ss_pred             HHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHH-HHHHhhHHHHHHHHhccchHHHHHH
Confidence            8999999999999999999999998765    23222211            11 2222    56667788888888888


Q ss_pred             HHHHhHhhccCccch
Q 012897          229 LRTVGNIVTGDDFQT  243 (454)
Q Consensus       229 ~~~L~~l~~~~~~~~  243 (454)
                      .-+++.++.+.....
T Consensus       724 ~v~ls~~~~g~~~~~  738 (1387)
T KOG1517|consen  724 VVALSHFVVGYVSHL  738 (1387)
T ss_pred             HHHHHHHHHhhHHHh
Confidence            888888887655443

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.71  E-value=8.7e-06  Score=78.38  Aligned_cols=355  Identities=14%  Similarity=0.157  Sum_probs=179.4

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      ...|.|.....+..|.+.|..++... .. ...     .+|.+++...+.+ .+++...---|...+...++..  +.  
T Consensus        41 ~~lLdSnkd~~KleAmKRIia~iA~G-~d-vS~-----~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLA--LL--  108 (968)
T KOG1060|consen   41 KQLLDSNKDSLKLEAMKRIIALIAKG-KD-VSL-----LFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLA--LL--  108 (968)
T ss_pred             HHHHhccccHHHHHHHHHHHHHHhcC-Cc-HHH-----HHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCce--ee--
Confidence            45677888888888888887776553 22 222     2555555555555 5555555545555554332221  11  


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHH-----------------------------------hhCCChhhHHHHHhcCCh
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGN-----------------------------------VAGDSPRCRDLVLSQGAL  126 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~-----------------------------------l~~~~~~~~~~~~~~~~i  126 (454)
                       -|..+-+-|.++|+.+|..|++++..                                   +-+-.++.+..+     +
T Consensus       109 -SIntfQk~L~DpN~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL-----~  182 (968)
T KOG1060|consen  109 -SINTFQKALKDPNQLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL-----E  182 (968)
T ss_pred             -eHHHHHhhhcCCcHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH-----H
Confidence             24444455555555555555555544                                   433333222221     1


Q ss_pred             HHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC---hHHHHH
Q 012897          127 IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT---NDKIQA  203 (454)
Q Consensus       127 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~---~~~~~~  203 (454)
                      ..+-.+| .+.++-|.-.|+.+...+|-+    ......+-...+..+|.+-++.-+..++..|...+++.   +.....
T Consensus       183 e~I~~LL-aD~splVvgsAv~AF~evCPe----rldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~  257 (968)
T KOG1060|consen  183 EVIKKLL-ADRSPLVVGSAVMAFEEVCPE----RLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDS  257 (968)
T ss_pred             HHHHHHh-cCCCCcchhHHHHHHHHhchh----HHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCcccccc
Confidence            1111222 444444555555555544422    22233334444444444444444444444444433210   000000


Q ss_pred             HH----------------------Hh---CcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHh
Q 012897          204 VI----------------------EA---GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGL  258 (454)
Q Consensus       204 ~~----------------------~~---~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~  258 (454)
                      ..                      +.   -+++..-.++.+.++.+..+++.+...++-.+.       ...+++.|+.+
T Consensus       258 ~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~-------~~~i~kaLvrL  330 (968)
T KOG1060|consen  258 SLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ-------VTKIAKALVRL  330 (968)
T ss_pred             ccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH-------HHHHHHHHHHH
Confidence            00                      00   012223334455566666777777766664321       11446677777


Q ss_pred             hcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhh--hcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcC
Q 012897          259 LTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQ--NAEFDIKKEAAWAISNATSGGTHEQIKYLVREG  336 (454)
Q Consensus       259 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~  336 (454)
                      |.+.  ..+|...+..+..++...+...        -|.+..+.-  ++...++..=+..|.+++...+...        
T Consensus       331 Lrs~--~~vqyvvL~nIa~~s~~~~~lF--------~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~--------  392 (968)
T KOG1060|consen  331 LRSN--REVQYVVLQNIATISIKRPTLF--------EPHLKSFFVRSSDPTQVKILKLEILSNLANESNISE--------  392 (968)
T ss_pred             HhcC--CcchhhhHHHHHHHHhcchhhh--------hhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHH--------
Confidence            7544  3466666666666654433322        233333322  2234566666777888876443222        


Q ss_pred             CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 012897          337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILE  416 (454)
Q Consensus       337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~  416 (454)
                      .++-+..++++.+.++...++.+|+.+...-....                  .-++.-|..++.+.++-|-..|...|.
T Consensus       393 ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~------------------~tCL~gLv~Llsshde~Vv~eaV~vIk  454 (968)
T KOG1060|consen  393 ILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVT------------------DTCLNGLVQLLSSHDELVVAEAVVVIK  454 (968)
T ss_pred             HHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchh------------------hHHHHHHHHHHhcccchhHHHHHHHHH
Confidence            35667778888888888888888888865432211                  223455666666667777777777777


Q ss_pred             HhcCcC
Q 012897          417 TYWLEE  422 (454)
Q Consensus       417 ~~~~~~  422 (454)
                      ++++.+
T Consensus       455 ~Llq~~  460 (968)
T KOG1060|consen  455 RLLQKD  460 (968)
T ss_pred             HHHhhC
Confidence            766543

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.71  E-value=1.8e-06  Score=85.45  Aligned_cols=376  Identities=14%  Similarity=0.118  Sum_probs=240.2

Q ss_pred             ccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCh
Q 012897            5 VWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAV   84 (454)
Q Consensus         5 L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i   84 (454)
                      -+++++.++..++..+.++++......    ...++++.+.++..+.. ..+|..|...+.++........  -....+.
T Consensus       246 c~d~~~~Vr~~~a~~l~~~a~~~~~~~----~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~--d~~~~~~  318 (759)
T KOG0211|consen  246 CQDDTPMVRRAVASNLGNIAKVLESEI----VKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD--DVVKSLT  318 (759)
T ss_pred             ccccchhhHHHHHhhhHHHHHHHHHHH----HHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch--hhhhhhh
Confidence            356678888888888888877664433    33557888888888888 6888888888777766211111  1223456


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhC--------------------CChhh--------------------HHHHHhcC
Q 012897           85 PIFVKLLASPSDDVREQAVWALGNVAG--------------------DSPRC--------------------RDLVLSQG  124 (454)
Q Consensus        85 ~~L~~lL~~~~~~v~~~a~~~L~~l~~--------------------~~~~~--------------------~~~~~~~~  124 (454)
                      +.+++...+++..++.........++.                    +....                    +..+....
T Consensus       319 ~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~  398 (759)
T KOG0211|consen  319 ESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSS  398 (759)
T ss_pred             HHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhh
Confidence            777777777666666655544443331                    10000                    00111111


Q ss_pred             ChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHH
Q 012897          125 ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAV  204 (454)
Q Consensus       125 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  204 (454)
                      .++.+-.+. .+.+..++...+..+..+.--.+  .........|.....+++.++.++.+..+.+..+-...+..-...
T Consensus       399 ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~  475 (759)
T KOG0211|consen  399 ILPEVQVLV-LDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGIST  475 (759)
T ss_pred             hhHHHHHHH-hcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchh
Confidence            122222222 33444555544444444332211  222335677888888999999999999887765543333222334


Q ss_pred             HHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHH
Q 012897          205 IEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD  284 (454)
Q Consensus       205 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~  284 (454)
                      .....++.+..+-.+..+.++.+.++.+..++....   ..+++...-+.+...+.+. ...+|+.|+..+..++.....
T Consensus       476 ~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~~~G~  551 (759)
T KOG0211|consen  476 VSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVETFGS  551 (759)
T ss_pred             hhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHHHhCc
Confidence            445677778777777788999999999988886332   3455555666666777776 778999999999888863221


Q ss_pred             HHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHH
Q 012897          285 QIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENIL  364 (454)
Q Consensus       285 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~  364 (454)
                         .......++.++.+...++...|...+.++..++.....+.    ..+.+++.+..+..++.+.|+..++..|..+.
T Consensus       552 ---~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei----~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~  624 (759)
T KOG0211|consen  552 ---EWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI----TCEDLLPVFLDLVKDPVANVRINVAKHLPKIL  624 (759)
T ss_pred             ---chhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH----HHHHHhHHHHHhccCCchhhhhhHHHHHHHHH
Confidence               22224467778887777778899999999887776544333    44568999999999999999999999999998


Q ss_pred             HhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 012897          365 KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILET  417 (454)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~  417 (454)
                      +.-...                ..+....+.++.+-.+++.+++-+|......
T Consensus       625 ~~L~~~----------------~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~  661 (759)
T KOG0211|consen  625 KLLDES----------------VRDEEVLPLLETLSSDQELDVRYRAILAFGS  661 (759)
T ss_pred             hhcchH----------------HHHHHHHHHHHHhccCcccchhHHHHHHHHH
Confidence            764432                2233345667777778888887777665443

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.66  E-value=2.5e-06  Score=84.37  Aligned_cols=374  Identities=17%  Similarity=0.128  Sum_probs=237.7

Q ss_pred             HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHH
Q 012897           10 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK   89 (454)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~   89 (454)
                      .+.+..++..+...........    ++....+..-++-++.. +.++..++.-+++++...+....   ..+.++.+..
T Consensus       212 ~~sr~sacglf~~~~~~~~~~~----vk~elr~~~~~lc~d~~-~~Vr~~~a~~l~~~a~~~~~~~~---~s~v~~~~~~  283 (759)
T KOG0211|consen  212 FQSRLSACGLFGKLYVSLPDDA----VKRELRPIVQSLCQDDT-PMVRRAVASNLGNIAKVLESEIV---KSEVLPTLIQ  283 (759)
T ss_pred             hhcchhhhhhhHHhccCCChHH----HHHHHHHHHHhhccccc-hhhHHHHHhhhHHHHHHHHHHHH---HhhccHHHhh
Confidence            3456778888888776663333    33334556666666767 99999999999999884444322   3467899999


Q ss_pred             hhCCCCHHHHHHHHHHHHHhhC--CCh-hhHHHHHhcCChHHHHHHhchhhhhhHHHH----------------------
Q 012897           90 LLASPSDDVREQAVWALGNVAG--DSP-RCRDLVLSQGALIPLLAQLNERAKLSMLRN----------------------  144 (454)
Q Consensus        90 lL~~~~~~v~~~a~~~L~~l~~--~~~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~----------------------  144 (454)
                      +..+....+|..|...+.++..  ..+ .....     ..+.+++.. .+.+..++..                      
T Consensus       284 L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~-----~~~~l~~~~-~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~  357 (759)
T KOG0211|consen  284 LLRDDQDSVREAAVESLVSLLDLLDDDDDVVKS-----LTESLVQAV-EDGSWRVSYMVADKFSELSSAVGPSATRTQLV  357 (759)
T ss_pred             hhhcchhhHHHHHHHHHHHHHHhcCCchhhhhh-----hhHHHHHHh-cChhHHHHHHHhhhhhhHHHHhccccCcccch
Confidence            9999889999988888877763  222 11111     233444443 2222222222                      


Q ss_pred             -----------------HHHHHHhhcCCCC--CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHH
Q 012897          145 -----------------ATWTLSNFCRGKP--QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVI  205 (454)
Q Consensus       145 -----------------a~~~L~~l~~~~~--~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  205 (454)
                                       +..-...++....  .........++|.+-.+..+.+..++.+.+..+..+....+.  ...+
T Consensus       358 ~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti  435 (759)
T KOG0211|consen  358 PPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTI  435 (759)
T ss_pred             hhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCc
Confidence                             2222222221110  011112234456666666777777777777666665433220  1111


Q ss_pred             HhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHH
Q 012897          206 EAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ  285 (454)
Q Consensus       206 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~  285 (454)
                       ....+.++..+++..+.++.+..+.+..+-..++...........++.+..+-... ...+|....+.+-.++....  
T Consensus       436 -~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~--  511 (759)
T KOG0211|consen  436 -SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG--  511 (759)
T ss_pred             -cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh--
Confidence             14567777788888899999998887776655554444555667788888888777 88899998888888775322  


Q ss_pred             HHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 012897          286 IQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILK  365 (454)
Q Consensus       286 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~  365 (454)
                       ..+.+...-+.+...+.+....++..|+..+..++..-..+.    .....++.+..+..+++...|...+.++..+..
T Consensus       512 -~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w----~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~  586 (759)
T KOG0211|consen  512 -VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEW----ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAE  586 (759)
T ss_pred             -hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcch----hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHH
Confidence             233333344445555666678999999998888876433211    122357777777777778888888888887776


Q ss_pred             hhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCC
Q 012897          366 VGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDD  424 (454)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~  424 (454)
                      .....                +.....++.+..+..++.++|+-.+.+.+..+...-..
T Consensus       587 v~g~e----------------i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~  629 (759)
T KOG0211|consen  587 VLGQE----------------ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE  629 (759)
T ss_pred             HhccH----------------HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch
Confidence            64432                22244468888999999999999999998887765443

>TIGR02270 conserved hypothetical protein

Probab=98.65  E-value=6.2e-06  Score=76.91  Aligned_cols=210  Identities=18%  Similarity=0.046  Sum_probs=111.5

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 012897           41 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV  120 (454)
Q Consensus        41 l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  120 (454)
                      +..|+..|.+.+ +.++..++.+|+.+-.           .+..+.|+.+|++.++.++..++.++...-.         
T Consensus        88 ~~~L~~~L~d~~-~~vr~aaa~ALg~i~~-----------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~---------  146 (410)
T TIGR02270        88 LRSVLAVLQAGP-EGLCAGIQAALGWLGG-----------RQAEPWLEPLLAASEPPGRAIGLAALGAHRH---------  146 (410)
T ss_pred             HHHHHHHhcCCC-HHHHHHHHHHHhcCCc-----------hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc---------
Confidence            445555555555 5555555555554332           2334555555555555555555544444210         


Q ss_pred             HhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH
Q 012897          121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDK  200 (454)
Q Consensus       121 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  200 (454)
                         ...+.+...+ ++.++.++..++.+|..+-..          ..++.|...+.+.++.|+..+++++..+..  +  
T Consensus       147 ---~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~--  208 (410)
T TIGR02270       147 ---DPGPALEAAL-THEDALVRAAALRALGELPRR----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R--  208 (410)
T ss_pred             ---ChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H--
Confidence               0133444444 455555666666655555432          334445555555566666666555544422  1  


Q ss_pred             HHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897          201 IQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  280 (454)
Q Consensus       201 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~  280 (454)
                             .....+..+...........+..++...  +         ....++.|..+++++   .++..++++++.+..
T Consensus       209 -------~A~~~l~~~~~~~g~~~~~~l~~~lal~--~---------~~~a~~~L~~ll~d~---~vr~~a~~AlG~lg~  267 (410)
T TIGR02270       209 -------LAWGVCRRFQVLEGGPHRQRLLVLLAVA--G---------GPDAQAWLRELLQAA---ATRREALRAVGLVGD  267 (410)
T ss_pred             -------hHHHHHHHHHhccCccHHHHHHHHHHhC--C---------chhHHHHHHHHhcCh---hhHHHHHHHHHHcCC
Confidence                   1112222222222222222222222222  0         114567778888766   389999999997743


Q ss_pred             CCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCC
Q 012897          281 GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSG  323 (454)
Q Consensus       281 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  323 (454)
                                 ...++.|+..+...  .++..|.+++..++-.
T Consensus       268 -----------p~av~~L~~~l~d~--~~aR~A~eA~~~ItG~  297 (410)
T TIGR02270       268 -----------VEAAPWCLEAMREP--PWARLAGEAFSLITGM  297 (410)
T ss_pred             -----------cchHHHHHHHhcCc--HHHHHHHHHHHHhhCC
Confidence                       24677788877643  4999999999999764

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.63  E-value=4.1e-06  Score=71.89  Aligned_cols=270  Identities=14%  Similarity=0.179  Sum_probs=168.9

Q ss_pred             CcccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897            1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID   80 (454)
Q Consensus         1 lv~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (454)
                      +++++.+.+|.++..|...+..+....  ...-.-.+...++.+.+++.... +  ...|+.++.|++. .+..++.+++
T Consensus         8 lv~ll~~~sP~v~~~AV~~l~~lt~~~--~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq-~~~l~~~ll~   81 (353)
T KOG2973|consen    8 LVELLHSLSPPVRKAAVEHLLGLTGRG--LQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQ-KEELRKKLLQ   81 (353)
T ss_pred             HHHHhccCChHHHHHHHHHHhhccccc--hhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHh-hHHHHHHHHH
Confidence            467889999999999999998887651  11111123346788999998888 5  6789999999999 7888888887


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc-----CChHHHHHH-hchhhh-hhHHHHHHHHHHhhc
Q 012897           81 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQ-----GALIPLLAQ-LNERAK-LSMLRNATWTLSNFC  153 (454)
Q Consensus        81 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----~~i~~l~~~-l~~~~~-~~~~~~a~~~L~~l~  153 (454)
                      . ++..++..+.++...+....+..+.|++++...........     .++..++.. ...+.+ ..-..+...++.+++
T Consensus        82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls  160 (353)
T KOG2973|consen   82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS  160 (353)
T ss_pred             H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence            7 88888888888877888888999999998776655443322     123333333 322222 133455666778887


Q ss_pred             CCCCCCChhhhhchH--HHHHHhhcCCChhHH-HHHHHHHHHhccCChHHHHHHHHh--CcHHHHH--------------
Q 012897          154 RGKPQPPFDQVRPAL--PALAQLVHSNDEEVL-TDACWALSYLSDGTNDKIQAVIEA--GVCPRLV--------------  214 (454)
Q Consensus       154 ~~~~~~~~~~~~~~l--~~l~~ll~~~~~~v~-~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~--------------  214 (454)
                      +....+........+  +.+..+-. .+..+| .-.+.+|.|+|...... ..+++.  .+++.++              
T Consensus       161 ~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h-~~lL~e~~~lLp~iLlPlagpee~sEEdm  238 (353)
T KOG2973|consen  161 QFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLH-EVLLDESINLLPAILLPLAGPEELSEEDM  238 (353)
T ss_pred             hhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhH-HHHhcchHHHHHHHHhhcCCccccCHHHH
Confidence            765433333332222  23333333 555554 44566788877654433 223321  2222222              


Q ss_pred             -------HhcC-----CCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897          215 -------ELLG-----HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  280 (454)
Q Consensus       215 -------~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~  280 (454)
                             +++.     .+++.+|..-+.+|-.+|... ..++.+.+.|+.+.+-.+=+...+++++..+-.....+..
T Consensus       239 ~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~-~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  239 AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR-AGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR  315 (353)
T ss_pred             hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh-HhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence                   3331     245678999999999888743 3556666666666666665555466666655555555544

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.60  E-value=4.3e-06  Score=85.92  Aligned_cols=373  Identities=13%  Similarity=0.113  Sum_probs=221.6

Q ss_pred             ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC-CCchhhHHHHhC
Q 012897            3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS-GTSENTKVVIDH   81 (454)
Q Consensus         3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~   81 (454)
                      ..+.|.+|..|..++.=|..+................+...+.++|.+.+ +-+|..|.+-++-+-. ++...++.    
T Consensus       825 ~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~k~~----  899 (1702)
T KOG0915|consen  825 TLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSLKKS----  899 (1702)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchhHHH----
Confidence            45678999999987766666655432222222223345688999999998 8889988888776655 33333333    


Q ss_pred             CChHHHHHhhCCC---------CHHHHH-------------HHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhh
Q 012897           82 GAVPIFVKLLASP---------SDDVRE-------------QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKL  139 (454)
Q Consensus        82 g~i~~L~~lL~~~---------~~~v~~-------------~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~  139 (454)
                       .+..|+.-|..+         +.++-+             ....=|++|+++-.       +-+.+-.++++-+.+-.-
T Consensus       900 -LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~-------qPdLVYKFM~LAnh~A~w  971 (1702)
T KOG0915|consen  900 -LVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLG-------QPDLVYKFMQLANHNATW  971 (1702)
T ss_pred             -HHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcC-------ChHHHHHHHHHhhhhchh
Confidence             345555544321         111111             11122333332110       001123334444222233


Q ss_pred             hHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC
Q 012897          140 SMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH  219 (454)
Q Consensus       140 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~  219 (454)
                      .-+.-|+.-+..++..............+|.|...=-+++..|+.....+...+........+..+. ++++.|+.-+.+
T Consensus       972 nSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~ 1050 (1702)
T KOG0915|consen  972 NSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTS 1050 (1702)
T ss_pred             hcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccc
Confidence            3455566666666665433444455677888888777889999887777776677665555555554 788889999999


Q ss_pred             CCCcchhhHHHHHhHhhccCccchhhhhc--cCChHHHHHhhcCCcchhHHHHH---HHHHHHHhcC-----CHHHHHHH
Q 012897          220 PSPSVLIPALRTVGNIVTGDDFQTQCIIT--YGALPYLLGLLTHSHKKSIKKEA---CWTISNITAG-----NRDQIQAV  289 (454)
Q Consensus       220 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~~L~~~~~~~v~~~a---~~~L~nl~~~-----~~~~~~~l  289 (454)
                      ..+.+|+++|.+|..+..+.+...  +.+  ..++..+...+++- ...||+.|   +.+|+.++..     ++..-+..
T Consensus      1051 kewRVReasclAL~dLl~g~~~~~--~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~ 1127 (1702)
T KOG0915|consen 1051 KEWRVREASCLALADLLQGRPFDQ--VKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAKGKEA 1127 (1702)
T ss_pred             hhHHHHHHHHHHHHHHHcCCChHH--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHH
Confidence            999999999999999998865321  111  14555666666666 66777765   4555555531     11112222


Q ss_pred             HhCCChHHHHHH-hhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHH-HHHHHHHHHHhh
Q 012897          290 IDAGLVGPLVNL-LQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV-CLEGLENILKVG  367 (454)
Q Consensus       290 ~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~-al~~L~~l~~~~  367 (454)
                      + ..++|.|+.- +.+.-+++|..++.++..++........+.+.  .+++.|++.++.-++.+... ++++ .++-...
T Consensus      1128 l-~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~--~LIp~ll~~~s~lE~~vLnYls~r~-~~~e~ea 1203 (1702)
T KOG0915|consen 1128 L-DIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFP--KLIPLLLNAYSELEPQVLNYLSLRL-INIETEA 1203 (1702)
T ss_pred             H-HHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhh--HHHHHHHHHccccchHHHHHHHHhh-hhhHHHH
Confidence            2 2355555541 12567899999999999999876654444433  37888888888777766554 3333 3332211


Q ss_pred             hhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHH
Q 012897          368 EAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI  407 (454)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v  407 (454)
                                 ..+...+..+.+-.++.++.+.++-+..+
T Consensus      1204 -----------lDt~R~s~aksspmmeTi~~ci~~iD~~v 1232 (1702)
T KOG0915|consen 1204 -----------LDTLRASAAKSSPMMETINKCINYIDISV 1232 (1702)
T ss_pred             -----------HHHHHHhhhcCCcHHHHHHHHHHhhhHHH
Confidence                       11113445555666777777766665444

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.59  E-value=9.7e-06  Score=77.65  Aligned_cols=358  Identities=15%  Similarity=0.110  Sum_probs=185.9

Q ss_pred             ccccCCCHHHHHHHHHHHHHHhccCCCCcH--HHHHH------cCCHHHH----------------------------HH
Q 012897            3 AGVWSDDSSLQLEATTQFRKLLSIERSPPI--EEVIQ------SGVVPRF----------------------------VE   46 (454)
Q Consensus         3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~--~~~~~------~~~l~~L----------------------------~~   46 (454)
                      +.|.+++.+.+..|.+.+..++.+...-+.  -.+++      ..-++.|                            -+
T Consensus        27 ~~Lek~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~Rk  106 (948)
T KOG1058|consen   27 EKLEKGDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRK  106 (948)
T ss_pred             HHHhcCChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHHHhh
Confidence            457788889999999888877655422211  11111      1111111                            12


Q ss_pred             hhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCCh
Q 012897           47 FLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGAL  126 (454)
Q Consensus        47 lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i  126 (454)
                      =|++++ +-+|-.+++.|+.+=.  ++..     ...+|.+..+|.+...-+|++|+.++..+-....   ..+  -++-
T Consensus       107 DLQHPN-EyiRG~TLRFLckLkE--~ELl-----epl~p~IracleHrhsYVRrNAilaifsIyk~~~---~L~--pDap  173 (948)
T KOG1058|consen  107 DLQHPN-EYIRGSTLRFLCKLKE--PELL-----EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE---HLI--PDAP  173 (948)
T ss_pred             hccCch-HhhcchhhhhhhhcCc--HHHh-----hhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh---hhc--CChH
Confidence            245555 5666666666665543  3322     2467888889999999999999998888854311   111  1223


Q ss_pred             HHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhh---cCCChhHHHHHHHHHHHhccCChHHHHH
Q 012897          127 IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV---HSNDEEVLTDACWALSYLSDGTNDKIQA  203 (454)
Q Consensus       127 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll---~~~~~~v~~~a~~~L~~l~~~~~~~~~~  203 (454)
                      +.+-..|..+.|+..+++|...|...-..          ..+..+...+   .+-++.++......+...+...+.... 
T Consensus       174 eLi~~fL~~e~DpsCkRNAFi~L~~~D~E----------rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~-  242 (948)
T KOG1058|consen  174 ELIESFLLTEQDPSCKRNAFLMLFTTDPE----------RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKA-  242 (948)
T ss_pred             HHHHHHHHhccCchhHHHHHHHHHhcCHH----------HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhh-
Confidence            33444555666777777776655443211          2222222222   223455555555555555544433322 


Q ss_pred             HHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc------------------cchhhhh--------------ccCC
Q 012897          204 VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD------------------FQTQCII--------------TYGA  251 (454)
Q Consensus       204 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~------------------~~~~~~~--------------~~~~  251 (454)
                          ..+..+..+|.+.++.++..|..+|.+++....                  ...+.+.              =.+.
T Consensus       243 ----~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l  318 (948)
T KOG1058|consen  243 ----RYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGL  318 (948)
T ss_pred             ----HHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHH
Confidence                334455556655555555544444444442211                  0111000              0022


Q ss_pred             hHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhh-----------cchhhHHHHHHHHHHh
Q 012897          252 LPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN-----------AEFDIKKEAAWAISNA  320 (454)
Q Consensus       252 l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-----------~~~~v~~~a~~aL~~l  320 (454)
                      +--++..|.++ +-++|+.+......++..           .-+..++.+++.           ++..-|+.-..++..+
T Consensus       319 ~mDvLrvLss~-dldvr~Ktldi~ldLvss-----------rNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~c  386 (948)
T KOG1058|consen  319 IMDVLRVLSSP-DLDVRSKTLDIALDLVSS-----------RNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHAC  386 (948)
T ss_pred             HHHHHHHcCcc-cccHHHHHHHHHHhhhhh-----------ccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHH
Confidence            23334444455 555665555555444432           112222222211           1223455666666666


Q ss_pred             cCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHh
Q 012897          321 TSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ  400 (454)
Q Consensus       321 ~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~  400 (454)
                      +..-+ +.     ...+++.|++.+.+.++.....++..+...+...++.+            ...+.     ..++.+-
T Consensus       387 av~Fp-~~-----aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr------------~~ii~-----~l~~~~~  443 (948)
T KOG1058|consen  387 AVKFP-EV-----AATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR------------ASIIE-----KLLETFP  443 (948)
T ss_pred             hhcCh-HH-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH------------HHHHH-----HHHHhhh
Confidence            55422 22     12367888888888888877777777777776654422            11111     2223333


Q ss_pred             cCCCHHHHHHHHHHHHHhcCcCC
Q 012897          401 SHDNNEIYEKAVKILETYWLEED  423 (454)
Q Consensus       401 ~~~~~~v~~~a~~~l~~~~~~~~  423 (454)
                      .-...+++.-|.|++..|...+.
T Consensus       444 ~irS~ki~rgalwi~GeYce~~~  466 (948)
T KOG1058|consen  444 QIRSSKICRGALWILGEYCEGLS  466 (948)
T ss_pred             hhcccccchhHHHHHHHHHhhhH
Confidence            44556778888888888887655

>PF05536 Neurochondrin: Neurochondrin

Probab=98.57  E-value=0.00011  Score=71.71  Aligned_cols=375  Identities=16%  Similarity=0.134  Sum_probs=227.8

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCc--HHHHHHcCCHHHHHHhhcCCC------ChhHHHHHHHHHHHhcCCCch
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPP--IEEVIQSGVVPRFVEFLMRED------YPQLQFEAAWALTNIASGTSE   73 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~~l~~L~~lL~~~~------~~~v~~~a~~~L~~l~~~~~~   73 (454)
                      ++.|++.+.+-+..++..+++++...+...  .+.+.+.=+.+.+-++|.++.      ....+.-|+.+|..+|. .++
T Consensus        11 ~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~-~~~   89 (543)
T PF05536_consen   11 LSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR-DPE   89 (543)
T ss_pred             HHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC-Chh
Confidence            356788888899999999999998753222  334667766788888888732      15678888999999998 555


Q ss_pred             hhHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhh
Q 012897           74 NTKVVIDHGAVPIFVKLLASPSD-DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF  152 (454)
Q Consensus        74 ~~~~~~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l  152 (454)
                      ....---.+-||.|+..+.+.+. .+...++.+|..++ ..+..+..+.+.|.++.|.+.+.+  .+...+.++.++.++
T Consensus        90 ~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al~lL~~L  166 (543)
T PF05536_consen   90 LASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--QSFQMEIALNLLLNL  166 (543)
T ss_pred             hhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHHHHHHHHH
Confidence            54222223569999999988666 99999999999999 556678889999999999999844  556678888888888


Q ss_pred             cCCCCCC----ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH-HHH----HHHhCcHHHHHHhcCC-CCC
Q 012897          153 CRGKPQP----PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDK-IQA----VIEAGVCPRLVELLGH-PSP  222 (454)
Q Consensus       153 ~~~~~~~----~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~----~~~~~~i~~L~~ll~~-~~~  222 (454)
                      +......    .......+++.+...+.......+...+..|..+-...+.. ...    -.-..+..-+..++++ ..+
T Consensus       167 ls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~  246 (543)
T PF05536_consen  167 LSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTP  246 (543)
T ss_pred             HHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCH
Confidence            7664321    12223456667777777777777888888888887655311 011    1112344445555554 345


Q ss_pred             cchhhHHHHHhHhhccCccchhhhh-cc-----CChHHHHHhh---------------cCCcchhHHH--HHHH-H----
Q 012897          223 SVLIPALRTVGNIVTGDDFQTQCII-TY-----GALPYLLGLL---------------THSHKKSIKK--EACW-T----  274 (454)
Q Consensus       223 ~v~~~a~~~L~~l~~~~~~~~~~~~-~~-----~~l~~L~~~L---------------~~~~~~~v~~--~a~~-~----  274 (454)
                      .-|..++...+.+.....  .+.++ +.     .+.-.++++.               ..+.......  .+|+ +    
T Consensus       247 ~~R~~al~Laa~Ll~~~G--~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf~ilE~~  324 (543)
T PF05536_consen  247 SQRDPALNLAASLLDLLG--PEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCFSILEHF  324 (543)
T ss_pred             HHHHHHHHHHHHHHHHhC--hHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHHHHHHHH
Confidence            667777777666664311  11111 11     1222222221               1111111111  1111 1    


Q ss_pred             HHHHhc--------CCHHHHHHHHh--CCChHHHHHHhhhc------chhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCc
Q 012897          275 ISNITA--------GNRDQIQAVID--AGLVGPLVNLLQNA------EFDIKKEAAWAISNATSGGTHEQIKYLVREGCI  338 (454)
Q Consensus       275 L~nl~~--------~~~~~~~~l~~--~~~i~~L~~ll~~~------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i  338 (454)
                      +..++.        -.++....+..  .+.+...+++++.-      ++.....+.++|+....-.+...++.+  .+++
T Consensus       325 I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v--~~Ll  402 (543)
T PF05536_consen  325 IGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEV--YGLL  402 (543)
T ss_pred             HHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHH--HHHH
Confidence            112222        12333333331  34455555666542      333667788888888775554444443  3688


Q ss_pred             HHHhhccCCCCH----------HHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHH
Q 012897          339 KPLCDLFVCPDP----------RIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIEN  398 (454)
Q Consensus       339 ~~L~~~l~~~~~----------~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~  398 (454)
                      +.++++.+....          +.+...+=+|..+...              ...++.+...|+.+.+-+
T Consensus       403 ~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e--------------~~gr~~l~~~~g~~~l~~  458 (543)
T PF05536_consen  403 PFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAE--------------EEGRKILLSNGGWKLLCD  458 (543)
T ss_pred             HHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhcc--------------HHHHHHHHhCCcHHHHHH
Confidence            888888875332          3555666667776632              224677777888776654

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=3.8e-05  Score=76.39  Aligned_cols=290  Identities=15%  Similarity=0.198  Sum_probs=193.1

Q ss_pred             CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHH
Q 012897            7 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPI   86 (454)
Q Consensus         7 s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~   86 (454)
                      ..++.++.-|+..+..+.++  .+....+...+.+..|+.+|.+.  |..|..++.+|..+++ +++......+.|++..
T Consensus      1783 ~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~y 1857 (2235)
T KOG1789|consen 1783 RKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSS-NGQIGKEALEHGGLMY 1857 (2235)
T ss_pred             cCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhh
Confidence            45788999999998877766  68889999999999999998775  4789999999999999 8888888889999999


Q ss_pred             HHHhhCC-CCHHHHHHHHHHHHHhhCCC---hhhHHH-----------HHhcCChHHHHHHhchh-hh------hhHHHH
Q 012897           87 FVKLLAS-PSDDVREQAVWALGNVAGDS---PRCRDL-----------VLSQGALIPLLAQLNER-AK------LSMLRN  144 (454)
Q Consensus        87 L~~lL~~-~~~~v~~~a~~~L~~l~~~~---~~~~~~-----------~~~~~~i~~l~~~l~~~-~~------~~~~~~  144 (454)
                      +..++.. .++..|.+++..++.+..+.   |..+..           .++. .-+..+..+... ++      +..+..
T Consensus      1858 il~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD-~PEAaVH~fE~T~EnPELiWn~~~r~k 1936 (2235)
T KOG1789|consen 1858 ILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRD-SPEAAVHMFESTSENPELIWNEVTRQK 1936 (2235)
T ss_pred             hhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhc-CHHHHHHHHhccCCCcccccCHhHHHH
Confidence            9988765 66999999999999987542   221111           1111 123333333211 11      122222


Q ss_pred             HHHHHHhhcCC----C---CC--------------------------------------CChhhhhchHHHHHHhhcCCC
Q 012897          145 ATWTLSNFCRG----K---PQ--------------------------------------PPFDQVRPALPALAQLVHSND  179 (454)
Q Consensus       145 a~~~L~~l~~~----~---~~--------------------------------------~~~~~~~~~l~~l~~ll~~~~  179 (454)
                      ....+..+...    .   +.                                      .......+.+..+..++..++
T Consensus      1937 vS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~ 2016 (2235)
T KOG1789|consen 1937 VSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPT 2016 (2235)
T ss_pred             HHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCC
Confidence            22233222211    0   00                                      011223445555566665443


Q ss_pred             hh--HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHH
Q 012897          180 EE--VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLG  257 (454)
Q Consensus       180 ~~--v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~  257 (454)
                      ++  .......++..+.+..+...+.+-.-|.+|.++..+...+..+-..|+++|..++.+ ..+.+.+.....+..+++
T Consensus      2017 peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~ 2095 (2235)
T KOG1789|consen 2017 PEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMK 2095 (2235)
T ss_pred             cccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHH
Confidence            32  222222334444455565556666679999999999888888889999999999974 446666777777777888


Q ss_pred             hhcCCcchhHHHHHHHHHHHHhc-CCHHHHHHHHhCCChHHHHHHhhhc
Q 012897          258 LLTHSHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNA  305 (454)
Q Consensus       258 ~L~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~  305 (454)
                      .|+.. - ...--|+.+|..+.. ...+.+...++.|.+|.|+.+++..
T Consensus      2096 ~mkK~-~-~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2096 SMKKQ-P-SLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred             HHHhc-c-hHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence            88655 2 344478888888876 3445555667899999999999764

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.53  E-value=4.7e-05  Score=65.62  Aligned_cols=271  Identities=14%  Similarity=0.133  Sum_probs=174.9

Q ss_pred             HHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHH
Q 012897          127 IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIE  206 (454)
Q Consensus       127 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  206 (454)
                      ..++.++ .+.++.++..|...+..++......-.......++.+.+++...++  ...|..++.|++.... ....++.
T Consensus         6 ~elv~ll-~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~~ll~   81 (353)
T KOG2973|consen    6 VELVELL-HSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRKKLLQ   81 (353)
T ss_pred             HHHHHHh-ccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHHHHHH
Confidence            4567777 7788999999999888888762111222235577888899887776  7788899999987643 3344555


Q ss_pred             hCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhh------ccCChHHHHHhhcCCcchhH-HHHHHHHHHHHh
Q 012897          207 AGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCII------TYGALPYLLGLLTHSHKKSI-KKEACWTISNIT  279 (454)
Q Consensus       207 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~------~~~~l~~L~~~L~~~~~~~v-~~~a~~~L~nl~  279 (454)
                      . ++..++..+.++...+...+|..++|+++........+.      +.+.+........++.+... -...+.+++|++
T Consensus        82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls  160 (353)
T KOG2973|consen   82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS  160 (353)
T ss_pred             H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence            4 888888888888889999999999999986553322221      24555555566655433212 234566777887


Q ss_pred             cCCHHHHHHHHhCCC--hHHHHHHhhhcchhhH-HHHHHHHHHhcCCCCHHHHHHHHH--cCCcHHH-------------
Q 012897          280 AGNRDQIQAVIDAGL--VGPLVNLLQNAEFDIK-KEAAWAISNATSGGTHEQIKYLVR--EGCIKPL-------------  341 (454)
Q Consensus       280 ~~~~~~~~~l~~~~~--i~~L~~ll~~~~~~v~-~~a~~aL~~l~~~~~~~~~~~l~~--~~~i~~L-------------  341 (454)
                      .. +..+..+.+...  ...+..+-. .+..+| ...+.+|.|++.... .+ ..+..  ..+++.|             
T Consensus       161 ~~-~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~-~h-~~lL~e~~~lLp~iLlPlagpee~sEE  236 (353)
T KOG2973|consen  161 QF-EAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAK-LH-EVLLDESINLLPAILLPLAGPEELSEE  236 (353)
T ss_pred             hh-hhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccch-hH-HHHhcchHHHHHHHHhhcCCccccCHH
Confidence            54 444555554332  333444333 444554 456777788665321 11 11111  1112221             


Q ss_pred             --------hhccC-----CCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHH-hcCCCHHH
Q 012897          342 --------CDLFV-----CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENL-QSHDNNEI  407 (454)
Q Consensus       342 --------~~~l~-----~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l-~~~~~~~v  407 (454)
                              .+++.     .+++.+++..+.+|..++.-              ..-++.++.-|+.+.++.+ ...+++++
T Consensus       237 dm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT--------------~~GRe~lR~kgvYpilRElhk~e~ded~  302 (353)
T KOG2973|consen  237 DMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT--------------RAGREVLRSKGVYPILRELHKWEEDEDI  302 (353)
T ss_pred             HHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh--------------hHhHHHHHhcCchHHHHHHhcCCCcHHH
Confidence                    13343     35688999999999998743              2248889999999999988 46688999


Q ss_pred             HHHHHHHHHHhcC
Q 012897          408 YEKAVKILETYWL  420 (454)
Q Consensus       408 ~~~a~~~l~~~~~  420 (454)
                      ...+.++.+-+..
T Consensus       303 ~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  303 REACEQVVQMLVR  315 (353)
T ss_pred             HHHHHHHHHHHHh
Confidence            9988888776655

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.48  E-value=1.1e-05  Score=81.14  Aligned_cols=296  Identities=15%  Similarity=0.094  Sum_probs=189.8

Q ss_pred             ChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC----C
Q 012897           83 AVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK----P  157 (454)
Q Consensus        83 ~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~----~  157 (454)
                      +++.+...+++ .....+..|+..|..++.....   ...-..+++.++.++ .++...|+..|+.+|..+...-    +
T Consensus       423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~-~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~  498 (1431)
T KOG1240|consen  423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLL-MDSEADVRATALETLTELLALVRDIPP  498 (1431)
T ss_pred             eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHh-cCchHHHHHHHHHHHHHHHhhccCCCc
Confidence            45666666666 5677888899998888754321   222234688888888 7888999999999998887553    3


Q ss_pred             CCChhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhh
Q 012897          158 QPPFDQVRPALPALAQLVHS-NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV  236 (454)
Q Consensus       158 ~~~~~~~~~~l~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~  236 (454)
                      ........-++|.|..++.+ ....++..-+.+|..++....    .+.+..--.....++.+++.+.       .... 
T Consensus       499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~----rFle~~q~~~~~g~~n~~nset-------~~~~-  566 (1431)
T KOG1240|consen  499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY----RFLELTQELRQAGMLNDPNSET-------APEQ-  566 (1431)
T ss_pred             ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH----HHHHHHHHHHhcccccCccccc-------cccc-
Confidence            33344556788999999887 556677777778888775322    2222211122222344444330       0000 


Q ss_pred             ccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHH
Q 012897          237 TGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWA  316 (454)
Q Consensus       237 ~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a  316 (454)
                       ........+. ..+-.....++.++ .+.||...+..|.-||.....   .--+.-+++.|+..|++.|+.+|..-...
T Consensus       567 -~~~~~~~~L~-~~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFGk---~ksND~iLshLiTfLNDkDw~LR~aFfds  640 (1431)
T KOG1240|consen  567 -NYNTELQALH-HTVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFGK---EKSNDVILSHLITFLNDKDWRLRGAFFDS  640 (1431)
T ss_pred             -ccchHHHHHH-HHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhhh---cccccchHHHHHHHhcCccHHHHHHHHhh
Confidence             0111222222 24445666777777 788999888888888751110   00123468999999999999999877777


Q ss_pred             HHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHH
Q 012897          317 ISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKI  396 (454)
Q Consensus       317 L~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l  396 (454)
                      |.-++..-....    .++..++.|.+-+.++++-|...|+++|..+++.+--.+..         +.      ..++..
T Consensus       641 I~gvsi~VG~rs----~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~---------v~------~i~~~v  701 (1431)
T KOG1240|consen  641 IVGVSIFVGWRS----VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPA---------VK------DILQDV  701 (1431)
T ss_pred             ccceEEEEeeee----HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHH---------HH------HHHHhh
Confidence            766554322221    23457899999999999999999999999999865432210         11      223344


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHhc
Q 012897          397 ENLQSHDNNEIYEKAVKILETYW  419 (454)
Q Consensus       397 ~~l~~~~~~~v~~~a~~~l~~~~  419 (454)
                      --++-|+|.=|+..+..+|....
T Consensus       702 ~PlL~hPN~WIR~~~~~iI~~~~  724 (1431)
T KOG1240|consen  702 LPLLCHPNLWIRRAVLGIIAAIA  724 (1431)
T ss_pred             hhheeCchHHHHHHHHHHHHHHH
Confidence            45688999999999988766543

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=0.00019  Score=62.44  Aligned_cols=328  Identities=13%  Similarity=0.106  Sum_probs=199.4

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh--hhHHH--HHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCC
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSP--RCRDL--VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP  157 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~--~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  157 (454)
                      +..+.|-.-|..++..++..++..++.+..+++  .....  +.+.++++.++..+ -..+.++...|...+..++..+.
T Consensus        82 nlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcI-ggeddeVAkAAiesikrialfpa  160 (524)
T KOG4413|consen   82 NLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCI-GGEDDEVAKAAIESIKRIALFPA  160 (524)
T ss_pred             hhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHH-cCCcHHHHHHHHHHHHHHHhcHH
Confidence            455666666777889999999999988886655  23333  44778888888888 67788999999999999987753


Q ss_pred             CCChhhhhchHH--HHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCCcchhhHHHHHhH
Q 012897          158 QPPFDQVRPALP--ALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGN  234 (454)
Q Consensus       158 ~~~~~~~~~~l~--~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~  234 (454)
                      .....+.+..+.  .+.++-...+.-++...+..+..+..-++......-++|++..|..-++- .+.-++..++.....
T Consensus       161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte  240 (524)
T KOG4413|consen  161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE  240 (524)
T ss_pred             HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence            222222222222  22233334456677778888888888778777777888999998888876 566678888888888


Q ss_pred             hhccCccchhhhhccCChHHHHHhhcCCc-chhHHHHHHHHHHHHhc------CCHHHHHHHHhCCChHHHHHHhhhcch
Q 012897          235 IVTGDDFQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWTISNITA------GNRDQIQAVIDAGLVGPLVNLLQNAEF  307 (454)
Q Consensus       235 l~~~~~~~~~~~~~~~~l~~L~~~L~~~~-~~~v~~~a~~~L~nl~~------~~~~~~~~l~~~~~i~~L~~ll~~~~~  307 (454)
                      ++. ....++.+-+.|++..+..++.... +|.-+-.++...+.+..      -+++....-. .-+++...+++...|+
T Consensus       241 Lae-teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaiceal-iiaidgsfEmiEmnDp  318 (524)
T KOG4413|consen  241 LAE-TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEAL-IIAIDGSFEMIEMNDP  318 (524)
T ss_pred             HHH-HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHH-HHHHHhhHHhhhcCCc
Confidence            876 3445667778899999999886431 34344445544444432      1333222111 1246667788888999


Q ss_pred             hhHHHHHHHHHHhcCCCCHHHHHHHHHcCC--cHH-HhhccCCCCHHHHHHHHHHHHHH---HHhhhhhhhccCCccccc
Q 012897          308 DIKKEAAWAISNATSGGTHEQIKYLVREGC--IKP-LCDLFVCPDPRIVTVCLEGLENI---LKVGEAEKNMGTATADVN  381 (454)
Q Consensus       308 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~--i~~-L~~~l~~~~~~v~~~al~~L~~l---~~~~~~~~~~~~~~~~~~  381 (454)
                      +....|..+++.+-++-  +....+.+.|-  .+. +....+.....-+..++.+|.++   ++..++....+.   ...
T Consensus       319 daieaAiDalGilGSnt--eGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgk---aee  393 (524)
T KOG4413|consen  319 DAIEAAIDALGILGSNT--EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGK---AEE  393 (524)
T ss_pred             hHHHHHHHHHHhccCCc--chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccH---HHH
Confidence            99999999999997743  33344444432  222 33333322222233445555554   333333221110   011


Q ss_pred             HHHHHH----HHh---ccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 012897          382 QYAQLV----EEA---EGLEKIENLQSHDNNEIYEKAVKILET  417 (454)
Q Consensus       382 ~~~~~l----~~~---g~~~~l~~l~~~~~~~v~~~a~~~l~~  417 (454)
                      ..+..+    .++   .-++....+...+.+++.-.+.+.+..
T Consensus       394 rlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTA  436 (524)
T KOG4413|consen  394 RLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTA  436 (524)
T ss_pred             HHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHH
Confidence            111111    111   112334455677888988877766543

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.46  E-value=3.6e-05  Score=72.90  Aligned_cols=220  Identities=14%  Similarity=0.137  Sum_probs=145.8

Q ss_pred             HHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC-----hHHHHH
Q 012897          129 LLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT-----NDKIQA  203 (454)
Q Consensus       129 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~-----~~~~~~  203 (454)
                      +..+. .+.+..|+..|+.+|..|....     .....+....++++.+++..|+..|+..+.-.....     .+..+.
T Consensus       203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~  276 (823)
T KOG2259|consen  203 LIYLE-HDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE  276 (823)
T ss_pred             HHHHh-cCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence            55555 6778889999999988887642     222345677889999999999999977665544322     111122


Q ss_pred             HHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHH--hcC
Q 012897          204 VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI--TAG  281 (454)
Q Consensus       204 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl--~~~  281 (454)
                      -....++..+...+.+.+..+|..|.+.|+.+-.-+++.....++..++..+-..=..+      +......++-  +++
T Consensus       277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ah------krpk~l~s~GewSsG  350 (823)
T KOG2259|consen  277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAH------KRPKALYSSGEWSSG  350 (823)
T ss_pred             hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcc------cchHHHHhcCCcccC
Confidence            22236788889999999999999999999998776555444444433333211111000      0111111111  110


Q ss_pred             -----------CHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCH
Q 012897          282 -----------NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDP  350 (454)
Q Consensus       282 -----------~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~  350 (454)
                                 ..+.-..++..|.-..++.-++++-.+||.+|...++.++...+ .+...     .+..|++++++...
T Consensus       351 k~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP-~FA~~-----aldfLvDMfNDE~~  424 (823)
T KOG2259|consen  351 KEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSP-GFAVR-----ALDFLVDMFNDEIE  424 (823)
T ss_pred             ccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCC-CcHHH-----HHHHHHHHhccHHH
Confidence                       01112235567777888888888889999999999999988643 22222     58899999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 012897          351 RIVTVCLEGLENILKV  366 (454)
Q Consensus       351 ~v~~~al~~L~~l~~~  366 (454)
                      .|+..++.+|..|...
T Consensus       425 ~VRL~ai~aL~~Is~~  440 (823)
T KOG2259|consen  425 VVRLKAIFALTMISVH  440 (823)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998765

>TIGR02270 conserved hypothetical protein

Probab=98.45  E-value=0.00013  Score=68.30  Aligned_cols=211  Identities=18%  Similarity=0.075  Sum_probs=139.8

Q ss_pred             CChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897           82 GAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP  160 (454)
Q Consensus        82 g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (454)
                      .+++.++..|. .++.+++..++.++...  +.+.         .+..++..+ .+.++.++..+..+|..+-.      
T Consensus        54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~~~---------~~~~L~~~L-~d~~~~vr~aaa~ALg~i~~------  115 (410)
T TIGR02270        54 AATELLVSALAEADEPGRVACAALALLAQ--EDAL---------DLRSVLAVL-QAGPEGLCAGIQAALGWLGG------  115 (410)
T ss_pred             hHHHHHHHHHhhCCChhHHHHHHHHHhcc--CChH---------HHHHHHHHh-cCCCHHHHHHHHHHHhcCCc------
Confidence            35778888884 56677777666555432  2221         267788888 66778899999998886543      


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897          161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD  240 (454)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  240 (454)
                          ....+.|..++.+.++.++..++.++....            ....+.+..+|+++++.++..|+.+|+.+...  
T Consensus       116 ----~~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--  177 (410)
T TIGR02270       116 ----RQAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELPRR--  177 (410)
T ss_pred             ----hHHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--
Confidence                366788999999999999988887776521            12345788888899999999999999887642  


Q ss_pred             cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHh
Q 012897          241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA  320 (454)
Q Consensus       241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  320 (454)
                               ..++.|...+.+. ++.||..|++++..+..  +..         +..+..+...........+..++...
T Consensus       178 ---------~a~~~L~~al~d~-~~~VR~aA~~al~~lG~--~~A---------~~~l~~~~~~~g~~~~~~l~~~lal~  236 (410)
T TIGR02270       178 ---------LSESTLRLYLRDS-DPEVRFAALEAGLLAGS--RLA---------WGVCRRFQVLEGGPHRQRLLVLLAVA  236 (410)
T ss_pred             ---------cchHHHHHHHcCC-CHHHHHHHHHHHHHcCC--HhH---------HHHHHHHHhccCccHHHHHHHHHHhC
Confidence                     3345577778888 99999999999977632  322         23344434443444443333333333


Q ss_pred             cCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHH
Q 012897          321 TSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENI  363 (454)
Q Consensus       321 ~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l  363 (454)
                         +.+         ..++.|..+++++.  ++..++.++..+
T Consensus       237 ---~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~l  265 (410)
T TIGR02270       237 ---GGP---------DAQAWLRELLQAAA--TRREALRAVGLV  265 (410)
T ss_pred             ---Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHc
Confidence               122         24556666666543  666777666655

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.42  E-value=4.6e-05  Score=70.30  Aligned_cols=340  Identities=14%  Similarity=0.090  Sum_probs=208.4

Q ss_pred             HHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC--C
Q 012897           17 TTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--P   94 (454)
Q Consensus        17 ~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~   94 (454)
                      +..|.++.... +.....+.-....+.+..++-+++ .+++..+.+++..+.. +++....+.+.++--.++.-|..  .
T Consensus         4 ~N~Lv~l~~~~-p~l~~~~~~~~~~~~i~~~lL~~~-~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~   80 (371)
T PF14664_consen    4 ANDLVDLLKRH-PTLKYDLVLSFFGERIQCMLLSDS-KEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNK   80 (371)
T ss_pred             HHHHHHHHHhC-chhhhhhhHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCC
Confidence            34555666554 322333444445666666666667 8999999999999998 77788888888877777777765  4


Q ss_pred             CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHh
Q 012897           95 SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQL  174 (454)
Q Consensus        95 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~l  174 (454)
                      +..=|++|+..+..+.......  ..+..+++..++.+. .+.++..+..++.+|..++-.  ++......|++..+...
T Consensus        81 ~~~ER~QALkliR~~l~~~~~~--~~~~~~vvralvaia-e~~~D~lr~~cletL~El~l~--~P~lv~~~gG~~~L~~~  155 (371)
T PF14664_consen   81 NDVEREQALKLIRAFLEIKKGP--KEIPRGVVRALVAIA-EHEDDRLRRICLETLCELALL--NPELVAECGGIRVLLRA  155 (371)
T ss_pred             ChHHHHHHHHHHHHHHHhcCCc--ccCCHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHhh--CHHHHHHcCCHHHHHHH
Confidence            4667889999998887442211  112345677888888 667788999999999999876  44556668899999988


Q ss_pred             hcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC-------CC--cchhhHHHHHhHhhccCccchhh
Q 012897          175 VHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP-------SP--SVLIPALRTVGNIVTGDDFQTQC  245 (454)
Q Consensus       175 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-------~~--~v~~~a~~~L~~l~~~~~~~~~~  245 (454)
                      +-++..++....+.++..+......+ +.+...--++.++.-+.+.       +.  +....+..++..+.+.-+.....
T Consensus       156 l~d~~~~~~~~l~~~lL~lLd~p~tR-~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l  234 (371)
T PF14664_consen  156 LIDGSFSISESLLDTLLYLLDSPRTR-KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYL  234 (371)
T ss_pred             HHhccHhHHHHHHHHHHHHhCCcchh-hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeee
Confidence            87776668888999999988765433 2222212244444444332       12  23445666666666544433222


Q ss_pred             hhcc-CChHHHHHhhcCCcchhHHHHHHHHHHHHhc-CCHHHH------HHHHhCCChHHHHHHh---hhcchhhHHHHH
Q 012897          246 IITY-GALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQI------QAVIDAGLVGPLVNLL---QNAEFDIKKEAA  314 (454)
Q Consensus       246 ~~~~-~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~-~~~~~~------~~l~~~~~i~~L~~ll---~~~~~~v~~~a~  314 (454)
                      ..+. ..++.|+..|..+ .+.+|....-.+..+.. ..+.-.      ......+-...--++-   ............
T Consensus       235 ~~~~~~~lksLv~~L~~p-~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~  313 (371)
T PF14664_consen  235 SMNDFRGLKSLVDSLRLP-NPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSS  313 (371)
T ss_pred             ecCCchHHHHHHHHHcCC-CHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCcccc
Confidence            2222 6889999999999 88899999999888876 222110      0111111110000000   000000000000


Q ss_pred             HHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCC-CHHHHHHHHHHHHHHHHhh
Q 012897          315 WAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP-DPRIVTVCLEGLENILKVG  367 (454)
Q Consensus       315 ~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~-~~~v~~~al~~L~~l~~~~  367 (454)
                       -=.++..+--.-....+.+.|+++.|+++..+. ++.+..+|.-.|..+++..
T Consensus       314 -~~~~l~~~y~aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~la  366 (371)
T PF14664_consen  314 -KRPNLVNHYLALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELLHLA  366 (371)
T ss_pred             -ccccHHHHHHHHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence             000111100111234457889999999999987 7888888888888887653

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.41  E-value=6.4e-06  Score=61.68  Aligned_cols=154  Identities=8%  Similarity=0.023  Sum_probs=124.3

Q ss_pred             CChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHH
Q 012897          250 GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQI  329 (454)
Q Consensus       250 ~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~  329 (454)
                      +.+..|+.-+....+.+.++....-|.|++-+ |.+...+.+.++++.++..+...+..++..++..|+|++.  ++...
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~n~   92 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKTNA   92 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChHHH
Confidence            44566776666665888899988889998865 6677788889999999999999999999999999999998  66778


Q ss_pred             HHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHH
Q 012897          330 KYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYE  409 (454)
Q Consensus       330 ~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~  409 (454)
                      +.+.+.+.++.++..++++...+...++..+..+...+..             ++..+-...+++.+++...+.+.+.+.
T Consensus        93 ~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt-------------~r~ell~p~Vv~~v~r~~~s~s~~~rn  159 (173)
T KOG4646|consen   93 KFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT-------------ERDELLSPAVVRTVQRWRESKSHDERN  159 (173)
T ss_pred             HHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc-------------hhHHhccHHHHHHHHHHHHHhhHHHHH
Confidence            8888999999999999999988888888777776543322             455666677788888888788888888


Q ss_pred             HHHHHHHHhc
Q 012897          410 KAVKILETYW  419 (454)
Q Consensus       410 ~a~~~l~~~~  419 (454)
                      .|...++..-
T Consensus       160 La~~fl~~~~  169 (173)
T KOG4646|consen  160 LASAFLDKHV  169 (173)
T ss_pred             HHHHHHHhhc
Confidence            8888777543

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.41  E-value=1.5e-05  Score=75.37  Aligned_cols=249  Identities=16%  Similarity=0.137  Sum_probs=158.9

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC------CCCC
Q 012897           87 FVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK------PQPP  160 (454)
Q Consensus        87 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~------~~~~  160 (454)
                      +..+..+.+..+|.+|+..+..|... ....+.     .....++++ .+.+..++..|+.+++......      ....
T Consensus       203 l~~~~~~~D~~Vrt~A~eglL~L~eg-~kL~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e  275 (823)
T KOG2259|consen  203 LIYLEHDQDFRVRTHAVEGLLALSEG-FKLSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESEE  275 (823)
T ss_pred             HHHHhcCCCcchHHHHHHHHHhhccc-ccccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence            55555666677777777776666542 112122     245567777 7778889988866655544332      1122


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhcc--
Q 012897          161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG--  238 (454)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--  238 (454)
                      ......++..+...+++....++..|..+|+.+-.-+.+.+...++.+++..+-..-.   ..-+-..+..=+.++++  
T Consensus       276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~---ahkrpk~l~s~GewSsGk~  352 (823)
T KOG2259|consen  276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRT---AHKRPKALYSSGEWSSGKE  352 (823)
T ss_pred             hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhh---cccchHHHHhcCCcccCcc
Confidence            2334567788888999999999999999999887766666666666554442222110   01111122222222221  


Q ss_pred             ---------CccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhh
Q 012897          239 ---------DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDI  309 (454)
Q Consensus       239 ---------~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v  309 (454)
                               .++....++.+|.=..++.-|.+. -.+||..|+..++.|+..+|...     ...+..|+++++++...|
T Consensus       353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA-----~~aldfLvDMfNDE~~~V  426 (823)
T KOG2259|consen  353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFA-----VRALDFLVDMFNDEIEVV  426 (823)
T ss_pred             ccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHHhccHHHHH
Confidence                     122344567777778888888888 88999999999999998665533     235778999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHH
Q 012897          310 KKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE  358 (454)
Q Consensus       310 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~  358 (454)
                      |..|..+|..++.+..       +++..++.+...+.+..+++++....
T Consensus       427 RL~ai~aL~~Is~~l~-------i~eeql~~il~~L~D~s~dvRe~l~e  468 (823)
T KOG2259|consen  427 RLKAIFALTMISVHLA-------IREEQLRQILESLEDRSVDVREALRE  468 (823)
T ss_pred             HHHHHHHHHHHHHHhe-------ecHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            9999999999877531       22234555666666666666554433

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=98.39  E-value=2.8e-05  Score=72.43  Aligned_cols=282  Identities=13%  Similarity=0.087  Sum_probs=150.6

Q ss_pred             ccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCh
Q 012897            5 VWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAV   84 (454)
Q Consensus         5 L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i   84 (454)
                      |++.-..+++++++++..++..+   ....+++ ..+..|-.+|+++. ...|..|+++|..++...|+....     +=
T Consensus       273 ls~k~emV~lE~Ar~v~~~~~~n---v~~~~~~-~~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~kv~v-----cN  342 (898)
T COG5240         273 LSDKFEMVFLEAARAVCALSEEN---VGSQFVD-QTVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQKVSV-----CN  342 (898)
T ss_pred             hcCcchhhhHHHHHHHHHHHHhc---cCHHHHH-HHHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCceeee-----cC
Confidence            34444666666666666655442   0111111 13455556666666 566666666666666543332111     11


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhh
Q 012897           85 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQV  164 (454)
Q Consensus        85 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  164 (454)
                      +-+-.++.+.+..+...|+..|..-  +..+.-+.+     +..+..++ .+-+...+.-+..++..||...|..+..  
T Consensus       343 ~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrL-----v~~I~sfv-hD~SD~FKiI~ida~rsLsl~Fp~k~~s--  412 (898)
T COG5240         343 KEVESLISDENRTISTYAITTLLKT--GTEETIDRL-----VNLIPSFV-HDMSDGFKIIAIDALRSLSLLFPSKKLS--  412 (898)
T ss_pred             hhHHHHhhcccccchHHHHHHHHHc--CchhhHHHH-----HHHHHHHH-HhhccCceEEeHHHHHHHHhhCcHHHHH--
Confidence            2333344445555544444444332  222222221     12222222 2223344444555555555544333332  


Q ss_pred             hchHHHHHHhh-cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccch
Q 012897          165 RPALPALAQLV-HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQT  243 (454)
Q Consensus       165 ~~~l~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  243 (454)
                        .+..|...| +.+.-+...++..++..+....++..+     ..+..|..++.+..  ..+-++++|+-+.+..|...
T Consensus       413 --~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDce--y~~I~vrIL~iLG~EgP~a~  483 (898)
T COG5240         413 --YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDCE--YHQITVRILGILGREGPRAK  483 (898)
T ss_pred             --HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhcc--hhHHHHHHHHHhcccCCCCC
Confidence              233333333 345566777788888877776655444     34455666665433  33445566666655444222


Q ss_pred             hhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897          244 QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS  322 (454)
Q Consensus       244 ~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  322 (454)
                      .   -...+..+..-+--. +..+|..|..+|..++....+   ......+...|.+++++.|.++|..|..++.++-.
T Consensus       484 ~---P~~yvrhIyNR~iLE-N~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~  555 (898)
T COG5240         484 T---PGKYVRHIYNRLILE-NNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRL  555 (898)
T ss_pred             C---cchHHHHHHHHHHHh-hhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence            1   123455666655556 778999999999888763221   11223356678888999999999999999999854

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.38  E-value=0.00071  Score=64.91  Aligned_cols=350  Identities=17%  Similarity=0.156  Sum_probs=200.7

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCChhhHH
Q 012897           41 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP--SDDVREQAVWALGNVAGDSPRCRD  118 (454)
Q Consensus        41 l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~  118 (454)
                      +..+.+=|.+.+ +.....|+.+++|+-.  -+.+..+.. + |+   ++|.++  .+-++..++.+|..|.+..|..  
T Consensus       113 in~iknDL~srn-~~fv~LAL~~I~niG~--re~~ea~~~-D-I~---KlLvS~~~~~~vkqkaALclL~L~r~spDl--  182 (938)
T KOG1077|consen  113 INSIKNDLSSRN-PTFVCLALHCIANIGS--REMAEAFAD-D-IP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDL--  182 (938)
T ss_pred             HHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHHHhhh-h-hH---HHHhCCcchHHHHHHHHHHHHHHHhcCccc--
Confidence            344555556666 7888899999999876  344444332 1 33   555553  3678888888888888766542  


Q ss_pred             HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhc-------------CCChhHHHH
Q 012897          119 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-------------SNDEEVLTD  185 (454)
Q Consensus       119 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~-------------~~~~~v~~~  185 (454)
                       +...+....++.+| .+.+..+...+...+..|+...+..........+..|..+..             -+.|.++..
T Consensus       183 -~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK  260 (938)
T KOG1077|consen  183 -VNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK  260 (938)
T ss_pred             -cChhhHHHHHHHHh-CccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence             22234577888888 666677777888888888876543332222233333333221             135778888


Q ss_pred             HHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC--CCc-----chhhHHHHHhHhhccCccchhhhhccCChHHHHHh
Q 012897          186 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP--SPS-----VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGL  258 (454)
Q Consensus       186 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~-----v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~  258 (454)
                      .++.|.++-...+.... ..-.++++.++...+.+  ...     ...+.+.-.-+++.+.+...+.+.  ..+..|-++
T Consensus       261 l~rlLq~~p~~~D~~~r-~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~f  337 (938)
T KOG1077|consen  261 LLRLLQIYPTPEDPSTR-ARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQF  337 (938)
T ss_pred             HHHHHHhCCCCCCchHH-HHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHH
Confidence            88888887433222211 11123455555555431  111     222334434445444443332222  466788888


Q ss_pred             hcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhh-hcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCC
Q 012897          259 LTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQ-NAEFDIKKEAAWAISNATSGGTHEQIKYLVREGC  337 (454)
Q Consensus       259 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~  337 (454)
                      +.+. +..+|.-|...++.++.... .. ..++.. .+.++..|+ ..|..+|+.|+..|..++...+...        .
T Consensus       338 ls~r-E~NiRYLaLEsm~~L~ss~~-s~-davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~--------I  405 (938)
T KOG1077|consen  338 LSHR-ETNIRYLALESMCKLASSEF-SI-DAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQ--------I  405 (938)
T ss_pred             hhcc-cccchhhhHHHHHHHHhccc-hH-HHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchhhHHH--------H
Confidence            8888 88999999999998887421 12 222222 666777887 5699999999999999988654432        3


Q ss_pred             cHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhc------cHHHHHHHhcCCCHHHHHHH
Q 012897          338 IKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAE------GLEKIENLQSHDNNEIYEKA  411 (454)
Q Consensus       338 i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g------~~~~l~~l~~~~~~~v~~~a  411 (454)
                      +.-+.+.+.+.++.+++-..-=..-+.+..-     ..+.|...-...++.-.|      ...++.++ --.+++++.+|
T Consensus       406 V~elLqYL~tAd~sireeivlKvAILaEKyA-----tDy~WyVdviLqLiriagd~vsdeVW~RvvQi-VvNnedlq~ya  479 (938)
T KOG1077|consen  406 VAELLQYLETADYSIREEIVLKVAILAEKYA-----TDYSWYVDVILQLIRIAGDYVSDEVWYRVVQI-VVNNEDLQGYA  479 (938)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHHHHHHhc-----CCcchhHHHHHHHHHHhcccccHHHHHHhhee-EecchhhhHHH
Confidence            5566677777777766543322222222111     122232222233333222      22222222 22567888888


Q ss_pred             HHHHHHhcCcCC
Q 012897          412 VKILETYWLEED  423 (454)
Q Consensus       412 ~~~l~~~~~~~~  423 (454)
                      .+-+-.|++..-
T Consensus       480 ak~~fe~Lq~~a  491 (938)
T KOG1077|consen  480 AKRLFEYLQKPA  491 (938)
T ss_pred             HHHHHHHHhhhH
Confidence            887777776433

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.38  E-value=0.00015  Score=67.20  Aligned_cols=245  Identities=28%  Similarity=0.313  Sum_probs=168.3

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      ++.+.+.++.++..|++.+..+-..            ..++.+..++.+.+ +.+|..|+.+|+.+-.           .
T Consensus        49 ~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~-----------~  104 (335)
T COG1413          49 LKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGD-----------P  104 (335)
T ss_pred             HHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCC-----------h
Confidence            3456677888888888886555433            25889999999999 8999999998887764           2


Q ss_pred             CChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhh-----------hhhHHHHHHHHH
Q 012897           82 GAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA-----------KLSMLRNATWTL  149 (454)
Q Consensus        82 g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-----------~~~~~~~a~~~L  149 (454)
                      ..++.++.++. +++..+|..+.++|+.+-...           .+..++..+.+..           ...++..+...+
T Consensus       105 ~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l  173 (335)
T COG1413         105 EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEAL  173 (335)
T ss_pred             hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHH
Confidence            35788889888 589999999999999984321           2556666663322           113566666666


Q ss_pred             HhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHH
Q 012897          150 SNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPAL  229 (454)
Q Consensus       150 ~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~  229 (454)
                      ..+-.          ...++.+...+.+.+..++..+..+|..+....         ..+.+.+...+.+++..+|..++
T Consensus       174 ~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~  234 (335)
T COG1413         174 GELGD----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAAL  234 (335)
T ss_pred             HHcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHH
Confidence            65543          245677888888888889999998888877553         24556777888888888999988


Q ss_pred             HHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhh
Q 012897          230 RTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDI  309 (454)
Q Consensus       230 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v  309 (454)
                      ..++.+-..           .....+...+... +..++..+...+...  ..         ......+...+.+....+
T Consensus       235 ~~l~~~~~~-----------~~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~---------~~~~~~l~~~~~~~~~~~  291 (335)
T COG1413         235 LALGEIGDE-----------EAVDALAKALEDE-DVILALLAAAALGAL--DL---------AEAALPLLLLLIDEANAV  291 (335)
T ss_pred             HHhcccCcc-----------hhHHHHHHHHhcc-chHHHHHHHHHhccc--Cc---------hhhHHHHHHHhhcchhhH
Confidence            888776532           2345677777777 666665555444411  10         122344555566667777


Q ss_pred             HHHHHHHHHHhcCC
Q 012897          310 KKEAAWAISNATSG  323 (454)
Q Consensus       310 ~~~a~~aL~~l~~~  323 (454)
                      +..+..++......
T Consensus       292 ~~~~~~~l~~~~~~  305 (335)
T COG1413         292 RLEAALALGQIGQE  305 (335)
T ss_pred             HHHHHHHHHhhccc
Confidence            77777777766553

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.37  E-value=5.6e-06  Score=61.98  Aligned_cols=115  Identities=15%  Similarity=0.102  Sum_probs=100.5

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 012897           39 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD  118 (454)
Q Consensus        39 ~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  118 (454)
                      +.+..|+.-.+...+.+.+++...-|.|.+. +|.+...+.+.+++..++..|..++..+.+.++..|+|+|.+.. ..+
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~~   93 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NAK   93 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HHH
Confidence            4567777777766558999999999999999 89999999999999999999999999999999999999997654 678


Q ss_pred             HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC
Q 012897          119 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  156 (454)
Q Consensus       119 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  156 (454)
                      .+.+.++++.++..+ +++.+.+...++.++..|+...
T Consensus        94 ~I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~  130 (173)
T KOG4646|consen   94 FIREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGE  130 (173)
T ss_pred             HHHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcc
Confidence            888999999999888 7777888889999999998765

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.33  E-value=0.00041  Score=66.00  Aligned_cols=345  Identities=15%  Similarity=0.114  Sum_probs=202.0

Q ss_pred             ccccCCCH---HHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh-----
Q 012897            3 AGVWSDDS---SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN-----   74 (454)
Q Consensus         3 ~~L~s~d~---~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~-----   74 (454)
                      ..|.++++   ......+.+|..++...  ...+.++ ..++..+....+...+.+....++.+|.++.....+.     
T Consensus         6 ~~Lpd~~~~~~~~~~~~L~~l~~ls~~~--~i~~~~~-~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~   82 (415)
T PF12460_consen    6 ALLPDSDSSTDSNYERILEALAALSTSP--QILETLS-IRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFED   82 (415)
T ss_pred             hhCCCCCCcchhHHHHHHHHHHHHHCCh--hHHHHHH-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccch
Confidence            34444444   56678888888888662  3333332 2566666666654444677788888888876633222     


Q ss_pred             hHHHHhCCChHHHHHhhCC-----C--CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc-----------hh
Q 012897           75 TKVVIDHGAVPIFVKLLAS-----P--SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN-----------ER  136 (454)
Q Consensus        75 ~~~~~~~g~i~~L~~lL~~-----~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-----------~~  136 (454)
                      .....+..+++.+..+...     .  ++.+...+..++..++..-+..++.-.    +..+..+..           ..
T Consensus        83 ~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~----~~~~~~lf~~~~~~~~~~~~~~  158 (415)
T PF12460_consen   83 NSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEI----LDELYSLFLSPKSFSPFQPSSS  158 (415)
T ss_pred             HHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHH----HHHHHHHHccccccCCCCcccc
Confidence            2334444578888776632     1  256666666777666654443333221    223333321           00


Q ss_pred             ----hhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhc-CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 012897          137 ----AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP  211 (454)
Q Consensus       137 ----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  211 (454)
                          .......-...++..+-.   .........++..++.+.. ..++..+..++.+++.++...+.. + .++ +++.
T Consensus       159 ~~~~~~~~~~~l~~~il~~l~~---~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~-~-~l~-~~l~  232 (415)
T PF12460_consen  159 TISEQQSRLVILFSAILCSLRK---DVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD-D-DLD-EFLD  232 (415)
T ss_pred             ccccccccHHHHHHHHHHcCCc---ccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh-h-hHH-HHHH
Confidence                111222223333444333   3333234457777777754 456888889999998888552211 1 111 2333


Q ss_pred             HHHHhc-CCCCCcchhhHHHHHhHhhcc----CccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHH--
Q 012897          212 RLVELL-GHPSPSVLIPALRTVGNIVTG----DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD--  284 (454)
Q Consensus       212 ~L~~ll-~~~~~~v~~~a~~~L~~l~~~----~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~--  284 (454)
                      .+...+ ....+..+..++.++..++.+    .....     ...+..|+.++.+   +.+...++..+.-+....++  
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~-----~~~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l  304 (415)
T PF12460_consen  233 SLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA-----TELLDKLLELLSS---PELGQQAAKAFGILLSDSDDVL  304 (415)
T ss_pred             HHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH-----HHHHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhc
Confidence            344433 334455566665555444432    11111     1356678888876   46788888888877765222  


Q ss_pred             ------HHHHHHhC----CChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHH
Q 012897          285 ------QIQAVIDA----GLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVT  354 (454)
Q Consensus       285 ------~~~~l~~~----~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~  354 (454)
                            .++.+.+.    .++|.|++..+..+...+.....||.++..+-+...... .-..+++.|++.++.++++++.
T Consensus       305 ~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~-~l~~LlPLLlqsL~~~~~~v~~  383 (415)
T PF12460_consen  305 NKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLP-ELPTLLPLLLQSLSLPDADVLL  383 (415)
T ss_pred             CccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHHHHHhCCCCHHHHH
Confidence                  23333333    356777777777666789999999999999766443221 1235899999999999999999


Q ss_pred             HHHHHHHHHHHhhhh
Q 012897          355 VCLEGLENILKVGEA  369 (454)
Q Consensus       355 ~al~~L~~l~~~~~~  369 (454)
                      .++.+|..++...+.
T Consensus       384 s~L~tL~~~l~~~~~  398 (415)
T PF12460_consen  384 SSLETLKMILEEAPE  398 (415)
T ss_pred             HHHHHHHHHHHcCHH
Confidence            999999999986543

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.32  E-value=2e-05  Score=68.54  Aligned_cols=189  Identities=16%  Similarity=0.125  Sum_probs=119.6

Q ss_pred             cCCCHHHHHHHHHHHHHHhccC-CCCcHHHHHH--cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 012897            6 WSDDSSLQLEATTQFRKLLSIE-RSPPIEEVIQ--SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG   82 (454)
Q Consensus         6 ~s~d~~~~~~a~~~L~~l~~~~-~~~~~~~~~~--~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g   82 (454)
                      .+.|++.|..|+..|..++.+. .......+..  ..++..+...+.+.. ..+...|+.++..++..-....+... ..
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~-~~   94 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYA-DI   94 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHH-HH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHH-HH
Confidence            6788999999999999998875 1122222222  145667777887777 78999999999999873333333332 35


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCC--CC
Q 012897           83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ--PP  160 (454)
Q Consensus        83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~--~~  160 (454)
                      ++|.|++.+.++...++..|..+|..++...+.....+     ...+.... .+.++.++..++..+..+....+.  ..
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~-~~Kn~~vR~~~~~~l~~~l~~~~~~~~~  168 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGL-KSKNPQVREECAEWLAIILEKWGSDSSV  168 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHT-T-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHH-hCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence            78999999999999999999999999987655111111     23334444 788899999999999888776541  11


Q ss_pred             hh---hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHH
Q 012897          161 FD---QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQ  202 (454)
Q Consensus       161 ~~---~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  202 (454)
                      ..   ....+.+.+..++.+.++++|..+-.++..+....++...
T Consensus       169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~  213 (228)
T PF12348_consen  169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE  213 (228)
T ss_dssp             G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred             hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence            11   2356888999999999999999999999988765554433

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.30  E-value=4.8e-05  Score=65.75  Aligned_cols=267  Identities=14%  Similarity=0.134  Sum_probs=162.1

Q ss_pred             hHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC
Q 012897          140 SMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH  219 (454)
Q Consensus       140 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~  219 (454)
                      ..+..-..++.......+........-+...|-++++.-++-.+.-|..|+.++......+.....+...-..++..+++
T Consensus       123 ~~k~~f~~vf~~~~~~~~~~v~~~~~LfleyLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n  202 (432)
T COG5231         123 KHKKEFLSVFKQMLKDNTSYVESNYLLFLEYLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQN  202 (432)
T ss_pred             HHHHHHHHHHHHHccCchHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHh
Confidence            33444444444444443222111122334445555665567788889999999886655444444555566677777765


Q ss_pred             --CCCcchhhHHHHHhHhhccCccchhhhhc--cCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCC-HHHHHHHH-hCC
Q 012897          220 --PSPSVLIPALRTVGNIVTGDDFQTQCIIT--YGALPYLLGLLTHSHKKSIKKEACWTISNITAGN-RDQIQAVI-DAG  293 (454)
Q Consensus       220 --~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~-~~~  293 (454)
                        +..+++...+.+++.++.... ..+ .++  ...+..++.+.+......|-+-++.++.|++... ...+..+. ..+
T Consensus       203 ~vg~~qlQY~SL~~iw~lTf~~~-~aq-di~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~  280 (432)
T COG5231         203 YVGVKQLQYNSLIIIWILTFSKE-CAQ-DIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLND  280 (432)
T ss_pred             hhhhhhhHHHHHHHHHHHhcCHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcc
Confidence              456889999999999986433 332 222  2455667777766546678888999999999833 33444433 333


Q ss_pred             ChHHHHHHhhhc--chhhHHHHHHHHHHhcCC---------------------CCH--------HHHHHHHHc--CCcHH
Q 012897          294 LVGPLVNLLQNA--EFDIKKEAAWAISNATSG---------------------GTH--------EQIKYLVRE--GCIKP  340 (454)
Q Consensus       294 ~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~---------------------~~~--------~~~~~l~~~--~~i~~  340 (454)
                      +.+....+.+.+  |.+++...-..=..+...                     .++        .+...+.+.  ..++.
T Consensus       281 ~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~  360 (432)
T COG5231         281 ISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKV  360 (432)
T ss_pred             hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHH
Confidence            544444444432  555543322222111110                     000        112222222  24677


Q ss_pred             HhhccCCCCHH-HHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 012897          341 LCDLFVCPDPR-IVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW  419 (454)
Q Consensus       341 L~~~l~~~~~~-v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~  419 (454)
                      |.++++..++. ....|+.-+..+++..++             ....+..-|+-+.|.+|++|++++|+-.|.+.++.+.
T Consensus       361 L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE-------------~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         361 LKKYLQSNNPNTWICVACSDIFQLVRASPE-------------INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             HHHHHhcCCCCceEeeeHhhHHHHHHhCch-------------HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            77888877766 556677778888776544             4677888999999999999999999999999988876


Q ss_pred             Cc
Q 012897          420 LE  421 (454)
Q Consensus       420 ~~  421 (454)
                      .+
T Consensus       428 ~~  429 (432)
T COG5231         428 SS  429 (432)
T ss_pred             hh
Confidence            54

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.29  E-value=0.001  Score=66.43  Aligned_cols=107  Identities=17%  Similarity=0.113  Sum_probs=71.7

Q ss_pred             CCCHHHHHHHHHHHHHHhccCC-CCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChH
Q 012897            7 SDDSSLQLEATTQFRKLLSIER-SPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVP   85 (454)
Q Consensus         7 s~d~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~   85 (454)
                      .+|+.....|++.+..+++.-. ...-....+.=+++.+...++++- -.+|..|+|+++.++..  +....-.-..+++
T Consensus       429 ~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~~~~~--df~d~~~l~~ale  505 (1010)
T KOG1991|consen  429 NKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQFSSI--DFKDPNNLSEALE  505 (1010)
T ss_pred             ccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHHHHhc--cCCChHHHHHHHH
Confidence            3456667777887777764321 122223333335666777778888 89999999999999952  2222222334677


Q ss_pred             HHHHhhC-CCCHHHHHHHHHHHHHhhCCChhh
Q 012897           86 IFVKLLA-SPSDDVREQAVWALGNVAGDSPRC  116 (454)
Q Consensus        86 ~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~  116 (454)
                      ...++|. +.+..++..|+.+|..+.++.+..
T Consensus       506 ~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~  537 (1010)
T KOG1991|consen  506 LTHNCLLNDNELPVRVEAALALQSFISNQEQA  537 (1010)
T ss_pred             HHHHHhccCCcCchhhHHHHHHHHHHhcchhh
Confidence            7778777 677889999999999888766543

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.26  E-value=0.0002  Score=66.37  Aligned_cols=249  Identities=24%  Similarity=0.294  Sum_probs=170.9

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 012897           39 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD  118 (454)
Q Consensus        39 ~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  118 (454)
                      ..++.+.+.+.+.+ +.++..+.+.++.+-.           .-.++.+..++.+.++.+|..++.+|+.+-  .+.   
T Consensus        43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~~---  105 (335)
T COG1413          43 EAADELLKLLEDED-LLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--DPE---  105 (335)
T ss_pred             hhHHHHHHHHcCCC-HHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--Chh---
Confidence            36888999999997 8999999999777664           246899999999999999999999888872  222   


Q ss_pred             HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCCh------------hHHHHH
Q 012897          119 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE------------EVLTDA  186 (454)
Q Consensus       119 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~------------~v~~~a  186 (454)
                            .++.++..+..+.+..++..+.++|..+-..          ..+..++..+.+...            .++..+
T Consensus       106 ------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a  169 (335)
T COG1413         106 ------AVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAA  169 (335)
T ss_pred             ------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence                  3778888885578899999999999998654          335666666666542            234444


Q ss_pred             HHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchh
Q 012897          187 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKS  266 (454)
Q Consensus       187 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~  266 (454)
                      ...+..+.           ....++.+...+.+....+|..+..+|+.+....         ..+...+...+.+. +..
T Consensus       170 ~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~  228 (335)
T COG1413         170 AEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE  228 (335)
T ss_pred             HHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence            44444332           1245667777888888888899988888887654         24456777888888 888


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccC
Q 012897          267 IKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV  346 (454)
Q Consensus       267 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~  346 (454)
                      +|..++.+++.+-..           .....++..+...+..++..+..++...-   ..         .....+...+.
T Consensus       229 vr~~~~~~l~~~~~~-----------~~~~~l~~~l~~~~~~~~~~~~~~~~~~~---~~---------~~~~~l~~~~~  285 (335)
T COG1413         229 VRKAALLALGEIGDE-----------EAVDALAKALEDEDVILALLAAAALGALD---LA---------EAALPLLLLLI  285 (335)
T ss_pred             HHHHHHHHhcccCcc-----------hhHHHHHHHHhccchHHHHHHHHHhcccC---ch---------hhHHHHHHHhh
Confidence            888888888876532           24556777777777777666665555110   10         11333444455


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 012897          347 CPDPRIVTVCLEGLENIL  364 (454)
Q Consensus       347 ~~~~~v~~~al~~L~~l~  364 (454)
                      +.+..++..+...+..+.
T Consensus       286 ~~~~~~~~~~~~~l~~~~  303 (335)
T COG1413         286 DEANAVRLEAALALGQIG  303 (335)
T ss_pred             cchhhHHHHHHHHHHhhc
Confidence            555555555555555543

>PF05536 Neurochondrin: Neurochondrin

Probab=98.25  E-value=0.00013  Score=71.07  Aligned_cols=237  Identities=18%  Similarity=0.170  Sum_probs=163.2

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh---hHHHHHhcCChHHHHHHhchh------hhhhHHHHHHHHHHhhc
Q 012897           83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPR---CRDLVLSQGALIPLLAQLNER------AKLSMLRNATWTLSNFC  153 (454)
Q Consensus        83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~---~~~~~~~~~~i~~l~~~l~~~------~~~~~~~~a~~~L~~l~  153 (454)
                      .++..+.+|+..+++-|..++..+.+++...+.   .++.+.+.=+...+-++|...      +....+.-++.+|..+|
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            467778899988888899999999999876553   234567766678888888532      34567888899999999


Q ss_pred             CCCCCCChhhhhchHHHHHHhhcCCCh-hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHH
Q 012897          154 RGKPQPPFDQVRPALPALAQLVHSNDE-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV  232 (454)
Q Consensus       154 ~~~~~~~~~~~~~~l~~l~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L  232 (454)
                      ..+.........+-+|.++.++.+.+. .+...++.+|..++.. +...+.+++.|.++.|...+.+ .+.....|+.++
T Consensus        86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL  163 (543)
T PF05536_consen   86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL  163 (543)
T ss_pred             CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence            976555556667889999999988777 9999999999999955 4455789999999999999877 667788899999


Q ss_pred             hHhhccCccchhh---hhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHH-HHHHHh----CCChHHHHHHhhh
Q 012897          233 GNIVTGDDFQTQC---IITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ-IQAVID----AGLVGPLVNLLQN  304 (454)
Q Consensus       233 ~~l~~~~~~~~~~---~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~-~~~l~~----~~~i~~L~~ll~~  304 (454)
                      .+++.........   -.-..+++.+...+... ....+..++..|..+....+.. ......    ..+...+..++.+
T Consensus       164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s  242 (543)
T PF05536_consen  164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS  242 (543)
T ss_pred             HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence            9988654311100   00013445555666655 6667788888888887654211 111111    2234445555555


Q ss_pred             c-chhhHHHHHHHHHHhcC
Q 012897          305 A-EFDIKKEAAWAISNATS  322 (454)
Q Consensus       305 ~-~~~v~~~a~~aL~~l~~  322 (454)
                      . .+.-|..+......+..
T Consensus       243 r~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  243 RLTPSQRDPALNLAASLLD  261 (543)
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence            4 45555555555554433

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.25  E-value=0.00018  Score=62.32  Aligned_cols=230  Identities=17%  Similarity=0.200  Sum_probs=153.4

Q ss_pred             HhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH-hCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHh
Q 012897           46 EFLMREDYPQLQFEAAWALTNIASGTSENTKVVI-DHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVLS  122 (454)
Q Consensus        46 ~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  122 (454)
                      ++++.-+ +-.+.-|+.++.++.. .++.|...- +...-..++..+++  +..+++-+.+.+++.++. ++.+.+.+-.
T Consensus       156 kl~Q~i~-~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K  232 (432)
T COG5231         156 KLSQLID-FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDK  232 (432)
T ss_pred             HHHHHHH-HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHH
Confidence            4444445 6678888999999988 666666553 44456778888876  668899999999999864 4444433322


Q ss_pred             -cCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh--hhhhc-hHHHHHHhhcC--CChhHHHHHHHHHHHhccC
Q 012897          123 -QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF--DQVRP-ALPALAQLVHS--NDEEVLTDACWALSYLSDG  196 (454)
Q Consensus       123 -~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~-~l~~l~~ll~~--~~~~v~~~a~~~L~~l~~~  196 (454)
                       .+.+..++++......+.+.+-++.++.+++...+...+  ....+ +.+..-.++..  .|++++...-..=..+..+
T Consensus       233 ~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~  312 (432)
T COG5231         233 MDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQN  312 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Confidence             234667778877777889999999999999984322211  12223 33333333332  2444433322211111110


Q ss_pred             ---------------------Ch---------HHHHHHHH--hCcHHHHHHhcCCCCCc-chhhHHHHHhHhhccCccch
Q 012897          197 ---------------------TN---------DKIQAVIE--AGVCPRLVELLGHPSPS-VLIPALRTVGNIVTGDDFQT  243 (454)
Q Consensus       197 ---------------------~~---------~~~~~~~~--~~~i~~L~~ll~~~~~~-v~~~a~~~L~~l~~~~~~~~  243 (454)
                                           ++         .+.+.+.+  ..++..|..+++..++. ...-||.-++.+++..|+..
T Consensus       313 ~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~  392 (432)
T COG5231         313 TKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEIN  392 (432)
T ss_pred             hhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHH
Confidence                                 00         11222222  14678888889887665 67778999999999999888


Q ss_pred             hhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHh
Q 012897          244 QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT  279 (454)
Q Consensus       244 ~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~  279 (454)
                      ..+.+.|+-..++.++.++ +++||-+|..++..+.
T Consensus       393 ~vl~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i  427 (432)
T COG5231         393 AVLSKYGVKEIIMNLINHD-DDDVKFEALQALQTCI  427 (432)
T ss_pred             HHHHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHH
Confidence            8888999999999999999 9999999999987665

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=98.24  E-value=0.00047  Score=64.61  Aligned_cols=307  Identities=12%  Similarity=0.119  Sum_probs=181.4

Q ss_pred             HHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhh
Q 012897           61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLS  140 (454)
Q Consensus        61 ~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~  140 (454)
                      +++...+...+++.+..+     .|.|-..+++.-+.+.-.+++.+..++..+-  ...... ..+..|-.+| ......
T Consensus       248 vr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~~-~~vs~L~~fL-~s~rv~  318 (898)
T COG5240         248 VRATVELLKENSQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFVD-QTVSSLRTFL-KSTRVV  318 (898)
T ss_pred             HHHHHHHHHhChHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHHH-HHHHHHHHHH-hcchHH
Confidence            444555555455554443     4666667777667777778888888764331  111111 1244444455 666778


Q ss_pred             HHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC
Q 012897          141 MLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP  220 (454)
Q Consensus       141 ~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~  220 (454)
                      .+-.|+.+|..|+...|....    -+-+-+-.++.+.+..+..+|+..|..-.  .++.+..++     ..+..++.+-
T Consensus       319 ~rFsA~Riln~lam~~P~kv~----vcN~evEsLIsd~Nr~IstyAITtLLKTG--t~e~idrLv-----~~I~sfvhD~  387 (898)
T COG5240         319 LRFSAMRILNQLAMKYPQKVS----VCNKEVESLISDENRTISTYAITTLLKTG--TEETIDRLV-----NLIPSFVHDM  387 (898)
T ss_pred             HHHHHHHHHHHHHhhCCceee----ecChhHHHHhhcccccchHHHHHHHHHcC--chhhHHHHH-----HHHHHHHHhh
Confidence            899999999999876543322    22234556677777777777777765533  334444333     3444445444


Q ss_pred             CCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHH
Q 012897          221 SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN  300 (454)
Q Consensus       221 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~  300 (454)
                      +...+.-+..++..++-..+....     ..+..|...|.....-+.++.+.-++..+....|+....     ++..|+.
T Consensus       388 SD~FKiI~ida~rsLsl~Fp~k~~-----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~  457 (898)
T COG5240         388 SDGFKIIAIDALRSLSLLFPSKKL-----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCT  457 (898)
T ss_pred             ccCceEEeHHHHHHHHhhCcHHHH-----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHH
Confidence            445555555555566554443322     345667777765546788999999999888766665533     4566888


Q ss_pred             HhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccc
Q 012897          301 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADV  380 (454)
Q Consensus       301 ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~  380 (454)
                      ++.+..  --+-+.+.|+-+-..++....    ...++..+..-+--.+..++..|+.||..+.-..+..          
T Consensus       458 fIEDce--y~~I~vrIL~iLG~EgP~a~~----P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~----------  521 (898)
T COG5240         458 FIEDCE--YHQITVRILGILGREGPRAKT----PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV----------  521 (898)
T ss_pred             HHhhcc--hhHHHHHHHHHhcccCCCCCC----cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc----------
Confidence            887642  223344455544443321100    0113455555555567889999999998875322211          


Q ss_pred             cHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 012897          381 NQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW  419 (454)
Q Consensus       381 ~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~  419 (454)
                            +.-......+.+.+++.+++|+++|.-.++.+-
T Consensus       522 ------~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         522 ------VSPQSVENALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             ------ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence                  111122345778899999999999998887654

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=98.22  E-value=0.0043  Score=61.65  Aligned_cols=169  Identities=17%  Similarity=0.174  Sum_probs=128.0

Q ss_pred             ccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCh
Q 012897            5 VWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAV   84 (454)
Q Consensus         5 L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i   84 (454)
                      +.+.+...+..|++.+...+... .+ ..     -..+.+++.+.+.+ .+++...-.-|...+...|+..-.     .+
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G-~d-ms-----sLf~dViK~~~trd-~ElKrL~ylYl~~yak~~P~~~lL-----av   94 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLG-ED-MS-----SLFPDVIKNVATRD-VELKRLLYLYLERYAKLKPELALL-----AV   94 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcC-CC-hH-----HHHHHHHHHHHhcC-HHHHHHHHHHHHHHhccCHHHHHH-----HH
Confidence            56778888999998887766554 22 21     24677888888667 899998888888888866633222     47


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhh
Q 012897           85 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQV  164 (454)
Q Consensus        85 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  164 (454)
                      +.+.+=++++|+.+|..|+++++.+= . ++.-..     .++++.+++ .++++.||+.|+.++..+-+-+  ......
T Consensus        95 Nti~kDl~d~N~~iR~~AlR~ls~l~-~-~el~~~-----~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld--~~l~~~  164 (757)
T COG5096          95 NTIQKDLQDPNEEIRGFALRTLSLLR-V-KELLGN-----IIDPIKKLL-TDPHAYVRKTAALAVAKLYRLD--KDLYHE  164 (757)
T ss_pred             HHHHhhccCCCHHHHHHHHHHHHhcC-h-HHHHHH-----HHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcC--Hhhhhc
Confidence            88888899999999999999999882 2 222122     467788888 8889999999999999998653  233334


Q ss_pred             hchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 012897          165 RPALPALAQLVHSNDEEVLTDACWALSYLSDG  196 (454)
Q Consensus       165 ~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~  196 (454)
                      .|.+..+..++.+.+|.+..+|+.++..+...
T Consensus       165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         165 LGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            56777888888999999999999999988644

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.22  E-value=0.00023  Score=67.83  Aligned_cols=264  Identities=15%  Similarity=0.114  Sum_probs=170.0

Q ss_pred             HHHHHHhccCCCCcHHHHHHcCCHHHHHHhh---------cCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHH
Q 012897           18 TQFRKLLSIERSPPIEEVIQSGVVPRFVEFL---------MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV   88 (454)
Q Consensus        18 ~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL---------~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~   88 (454)
                      .+|+-+...  ....+.+.....+..|.++-         ....++.+...|++||+|+...++..+..+.+.|+.+.++
T Consensus         3 ~~LRiLsRd--~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~   80 (446)
T PF10165_consen    3 ETLRILSRD--PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC   80 (446)
T ss_pred             HHHHHHccC--cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence            344433333  34555566666677777665         3333489999999999999998999999999999999999


Q ss_pred             HhhCCC-----CHHHHHHHHHHHHHhhCCChhhHHHHHhc-CChHHHHHHhchh----------------hhhhHHHHHH
Q 012897           89 KLLASP-----SDDVREQAVWALGNVAGDSPRCRDLVLSQ-GALIPLLAQLNER----------------AKLSMLRNAT  146 (454)
Q Consensus        89 ~lL~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~l~~~l~~~----------------~~~~~~~~a~  146 (454)
                      ..|+..     +.++.....++|.-++...+..+..+.+. +++..++..+...                .+......++
T Consensus        81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL  160 (446)
T PF10165_consen   81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL  160 (446)
T ss_pred             HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence            999875     78888889999988887777777666554 5666666655210                1445677788


Q ss_pred             HHHHhhcCCCCCCChhhh----hchHHHHHHhh---c--CCChhHHHHHHHHHHHhccCChHH-------HH----HHHH
Q 012897          147 WTLSNFCRGKPQPPFDQV----RPALPALAQLV---H--SNDEEVLTDACWALSYLSDGTNDK-------IQ----AVIE  206 (454)
Q Consensus       147 ~~L~~l~~~~~~~~~~~~----~~~l~~l~~ll---~--~~~~~v~~~a~~~L~~l~~~~~~~-------~~----~~~~  206 (454)
                      .++.|+....+.......    ..++..+..++   .  .+......+++.+|.|+--.....       ..    ....
T Consensus       161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~  240 (446)
T PF10165_consen  161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN  240 (446)
T ss_pred             HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence            888999877644333222    33444444442   1  123456778888888773211111       00    0011


Q ss_pred             hCcHHHHHHhcCC-----C---CCcchhhHHHHHhHhhccCccchhhhh----------------ccCChHHHHHhhcCC
Q 012897          207 AGVCPRLVELLGH-----P---SPSVLIPALRTVGNIVTGDDFQTQCII----------------TYGALPYLLGLLTHS  262 (454)
Q Consensus       207 ~~~i~~L~~ll~~-----~---~~~v~~~a~~~L~~l~~~~~~~~~~~~----------------~~~~l~~L~~~L~~~  262 (454)
                      ...+..++.+|..     .   -.+.....+.+|..++......++.+.                ...+-..|+.++.++
T Consensus       241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~  320 (446)
T PF10165_consen  241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP  320 (446)
T ss_pred             hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence            2345555555532     1   124556677777787776543333221                224567899999998


Q ss_pred             cchhHHHHHHHHHHHHhcCCHH
Q 012897          263 HKKSIKKEACWTISNITAGNRD  284 (454)
Q Consensus       263 ~~~~v~~~a~~~L~nl~~~~~~  284 (454)
                       .+.+|..+...+-.+|..+..
T Consensus       321 -~~~~k~~vaellf~Lc~~d~~  341 (446)
T PF10165_consen  321 -DPQLKDAVAELLFVLCKEDAS  341 (446)
T ss_pred             -CchHHHHHHHHHHHHHhhhHH
Confidence             699999999999888865443

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.19  E-value=0.00055  Score=71.19  Aligned_cols=342  Identities=16%  Similarity=0.154  Sum_probs=195.1

Q ss_pred             HHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHh
Q 012897           11 SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL   90 (454)
Q Consensus        11 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l   90 (454)
                      .-+..|+.-+..+++..  .....-.-..++|.|.+.=-+++ +.+|..-..+...+..++....+.... .++.-|+.-
T Consensus       972 nSk~GaAfGf~~i~~~a--~~kl~p~l~kLIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~ 1047 (1702)
T KOG0915|consen  972 NSKKGAAFGFGAIAKQA--GEKLEPYLKKLIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVN 1047 (1702)
T ss_pred             hcccchhhchHHHHHHH--HHhhhhHHHHhhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHh
Confidence            33444555555555442  11111122346788888777788 888877777777777755566555554 567778888


Q ss_pred             hCCCCHHHHHHHHHHHHHhhCCChh--hHHHHHhcCChHHHHHHhchhhhhhHHHHH---HHHHHhhcCCC-C----CCC
Q 012897           91 LASPSDDVREQAVWALGNVAGDSPR--CRDLVLSQGALIPLLAQLNERAKLSMLRNA---TWTLSNFCRGK-P----QPP  160 (454)
Q Consensus        91 L~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a---~~~L~~l~~~~-~----~~~  160 (454)
                      +.+....+|+.++.+|..|....+.  ..+.+.+  ....+.+.+ ++-.+.+|+.+   +.+|+.+|-.. .    ...
T Consensus      1048 lt~kewRVReasclAL~dLl~g~~~~~~~e~lpe--lw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~ 1124 (1702)
T KOG0915|consen 1048 LTSKEWRVREASCLALADLLQGRPFDQVKEKLPE--LWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAKG 1124 (1702)
T ss_pred             ccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccH
Confidence            8888999999999999999876553  2233221  234444444 55566676654   44555554332 1    112


Q ss_pred             hhhhhchHHHHHH-hhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchh-----------hH
Q 012897          161 FDQVRPALPALAQ-LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI-----------PA  228 (454)
Q Consensus       161 ~~~~~~~l~~l~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~-----------~a  228 (454)
                      ......++|.+.. -+-+.-++++..++.++..++............ .+++.|+.....-++.+..           +|
T Consensus      1125 ~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~-~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ea 1203 (1702)
T KOG0915|consen 1125 KEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFP-KLIPLLLNAYSELEPQVLNYLSLRLINIETEA 1203 (1702)
T ss_pred             HHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhh-HHHHHHHHHccccchHHHHHHHHhhhhhHHHH
Confidence            2233445555442 112567899999999999999877654443222 5666666666554443321           22


Q ss_pred             HHHHhH-hhccCcc--chhhhh-------ccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHH
Q 012897          229 LRTVGN-IVTGDDF--QTQCII-------TYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL  298 (454)
Q Consensus       229 ~~~L~~-l~~~~~~--~~~~~~-------~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L  298 (454)
                      +..+.. .+..++-  ....++       =...+|.+.++++.+-.-..|..++..+.-++........+.. -..+..+
T Consensus      1204 lDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s-gKll~al 1282 (1702)
T KOG0915|consen 1204 LDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS-GKLLRAL 1282 (1702)
T ss_pred             HHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcch-hHHHHHH
Confidence            222111 1111110  000011       1245677777777664556677777777776642111111111 1245566


Q ss_pred             HHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 012897          299 VNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV  366 (454)
Q Consensus       299 ~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~  366 (454)
                      +..+++.++.+++.-+.|.+.++....+++.+.++     +.+..-+-.+++.....++..+.+|...
T Consensus      1283 ~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLi-----e~~l~~~l~k~es~~siscatis~Ian~ 1345 (1702)
T KOG0915|consen 1283 FPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLI-----ETLLADLLGKDESLKSISCATISNIANY 1345 (1702)
T ss_pred             hhccccccHHHHHHHHHHHHHHHhcCChHHHHHHH-----HHHHHHHhccCCCccchhHHHHHHHHHh
Confidence            66777789999999999999999998887777644     3333333223322224555555655443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.19  E-value=2.8e-05  Score=78.41  Aligned_cols=302  Identities=17%  Similarity=0.121  Sum_probs=187.8

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC---CChhh
Q 012897           40 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAG---DSPRC  116 (454)
Q Consensus        40 ~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~---~~~~~  116 (454)
                      +++.+...++.-...+.+..|+..|..++....+   ...=.-++|.++.++.++...+|..|+.+|..+..   +-+..
T Consensus       423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~  499 (1431)
T KOG1240|consen  423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS  499 (1431)
T ss_pred             eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence            3566777777655578899999999998872211   11112478999999999999999999999988753   22322


Q ss_pred             HHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 012897          117 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG  196 (454)
Q Consensus       117 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~  196 (454)
                      -..++..-.++.|-.++.+.....++..-+..|..|+...  ..+. ....-.....++...+.+.       .  --.+
T Consensus       500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA--~rFl-e~~q~~~~~g~~n~~nset-------~--~~~~  567 (1431)
T KOG1240|consen  500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTA--YRFL-ELTQELRQAGMLNDPNSET-------A--PEQN  567 (1431)
T ss_pred             cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHH--HHHH-HHHHHHHhcccccCccccc-------c--cccc
Confidence            2333333356677777744355556666666666665431  0000 0000001111223333220       0  0011


Q ss_pred             ChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHH
Q 012897          197 TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS  276 (454)
Q Consensus       197 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~  276 (454)
                      .....+.+.. .+-+.+..++.++.+-|+..-+..|.-||.+....   --+.-+++.|+..|.+. ++.+|..-...+.
T Consensus       568 ~~~~~~~L~~-~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~---ksND~iLshLiTfLNDk-Dw~LR~aFfdsI~  642 (1431)
T KOG1240|consen  568 YNTELQALHH-TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE---KSNDVILSHLITFLNDK-DWRLRGAFFDSIV  642 (1431)
T ss_pred             cchHHHHHHH-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc---ccccchHHHHHHHhcCc-cHHHHHHHHhhcc
Confidence            1122232332 45566777888888888988888888888644321   12335788999999998 9988887777776


Q ss_pred             HHhc--CCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHH
Q 012897          277 NITA--GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVT  354 (454)
Q Consensus       277 nl~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~  354 (454)
                      -++.  +..     -++..++|.|.+-+.++.+-|...|+.+|..|+..+--+   +..-.+.++...-+|-.++.-+|.
T Consensus       643 gvsi~VG~r-----s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~---K~~v~~i~~~v~PlL~hPN~WIR~  714 (1431)
T KOG1240|consen  643 GVSIFVGWR-----SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLR---KPAVKDILQDVLPLLCHPNLWIRR  714 (1431)
T ss_pred             ceEEEEeee-----eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccc---hHHHHHHHHhhhhheeCchHHHHH
Confidence            5554  211     123457888889999999999999999999998764321   111122445555567788888999


Q ss_pred             HHHHHHHHHHHhhhh
Q 012897          355 VCLEGLENILKVGEA  369 (454)
Q Consensus       355 ~al~~L~~l~~~~~~  369 (454)
                      .++..|..+.+.-..
T Consensus       715 ~~~~iI~~~~~~ls~  729 (1431)
T KOG1240|consen  715 AVLGIIAAIARQLSA  729 (1431)
T ss_pred             HHHHHHHHHHhhhhh
Confidence            999888888765443

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.17  E-value=4.2e-06  Score=50.30  Aligned_cols=41  Identities=44%  Similarity=0.890  Sum_probs=38.1

Q ss_pred             CchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 012897           71 TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAG  111 (454)
Q Consensus        71 ~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~  111 (454)
                      +++.+..+++.|+++.|+++|.++++++++.++|+|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46788999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=7.4e-05  Score=71.72  Aligned_cols=242  Identities=17%  Similarity=0.188  Sum_probs=140.7

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 012897           40 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL  119 (454)
Q Consensus        40 ~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~  119 (454)
                      +...|.+.|++.+++.++.-++.-|+-...++...       .+.+.+-..|...+...-+.|...++-+...+.. .+ 
T Consensus       414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~-------eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~-~e-  484 (929)
T KOG2062|consen  414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE-------EIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN-QE-  484 (929)
T ss_pred             HHHHHHHHHHhccchhhhhhhhhhccchhcccccH-------HHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc-HH-
Confidence            44556666665554566666655555444322111       1234445555555544445554444444322211 01 


Q ss_pred             HHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 012897          120 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND  199 (454)
Q Consensus       120 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~  199 (454)
                           .+..++..-....++.+++-..--+.-.....       ..+.=+.+-+++.+.||-+|.....++.---.... 
T Consensus       485 -----aiedm~~Ya~ETQHeki~RGl~vGiaL~~ygr-------qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg-  551 (929)
T KOG2062|consen  485 -----AIEDMLTYAQETQHEKIIRGLAVGIALVVYGR-------QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTG-  551 (929)
T ss_pred             -----HHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhh-------hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC-
Confidence                 23344444444445555554333222222111       12444567788888888888887776643211111 


Q ss_pred             HHHHHHHhCcHHHHHHh-cCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHH
Q 012897          200 KIQAVIEAGVCPRLVEL-LGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI  278 (454)
Q Consensus       200 ~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl  278 (454)
                            +.+++..|++. .++.+.+||.+|..+|+.++...++.         .+..+.+|..+.++.||..++.+|+-.
T Consensus       552 ------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~ALGIa  616 (929)
T KOG2062|consen  552 ------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMALGIA  616 (929)
T ss_pred             ------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHHhhh
Confidence                  12567777777 67889999999999999998766633         356777776665999999999999998


Q ss_pred             hcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCC
Q 012897          279 TAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGT  325 (454)
Q Consensus       279 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  325 (454)
                      |.+....       ..+..|-.+..+...-||+.|+-++.-+....+
T Consensus       617 CAGtG~~-------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t  656 (929)
T KOG2062|consen  617 CAGTGLK-------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQT  656 (929)
T ss_pred             hcCCCcH-------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcc
Confidence            8864321       123444445556677788888888877765443

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.13  E-value=5.3e-06  Score=49.84  Aligned_cols=41  Identities=37%  Similarity=0.713  Sum_probs=37.7

Q ss_pred             CHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897          282 NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS  322 (454)
Q Consensus       282 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  322 (454)
                      ++++++.+++.|+++.|++++.++++++++.|+|+|+|++.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46778889999999999999999999999999999999963

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.10  E-value=3.3e-05  Score=67.22  Aligned_cols=187  Identities=18%  Similarity=0.116  Sum_probs=121.2

Q ss_pred             cCCChhHHHHHHHHHHHhccCC--hHHHHHHHH--hCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCC
Q 012897          176 HSNDEEVLTDACWALSYLSDGT--NDKIQAVIE--AGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGA  251 (454)
Q Consensus       176 ~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~--~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  251 (454)
                      .+.+.+.+..++..|..++...  ......+..  ..++..+...+.+....+...|+.++..++.......... -..+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~   95 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADIL   95 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence            5678888999999998887655  222222222  1566777888888888899999999999997655444433 2367


Q ss_pred             hHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCC-hHHHHHHhhhcchhhHHHHHHHHHHhcCCCC--HHH
Q 012897          252 LPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGL-VGPLVNLLQNAEFDIKKEAAWAISNATSGGT--HEQ  328 (454)
Q Consensus       252 l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~-i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~--~~~  328 (454)
                      ++.|+..+.++ ...++..|..+|..++...+-.      ..+ .+.+.....+.++.+|..++..+..++....  ...
T Consensus        96 l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~------~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~  168 (228)
T PF12348_consen   96 LPPLLKKLGDS-KKFIREAANNALDAIIESCSYS------PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV  168 (228)
T ss_dssp             HHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred             HHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcH------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence            88899999888 8889999999999999864411      112 5567777888899999999999999987654  111


Q ss_pred             HH-HHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhh
Q 012897          329 IK-YLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAE  370 (454)
Q Consensus       329 ~~-~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~  370 (454)
                      .. ...-..+.+.+..++.+++++||..+-.++..+.+..+..
T Consensus       169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~  211 (228)
T PF12348_consen  169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER  211 (228)
T ss_dssp             G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred             hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence            11 1111346888999999999999999999999998765543

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=98.08  E-value=0.002  Score=63.95  Aligned_cols=136  Identities=18%  Similarity=0.144  Sum_probs=105.4

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      ++...+.|.+++.-.-..|...+...  +.  .++-  .++.+.+=+++++ +.+|..|++.++.+=.  ++...     
T Consensus        61 iK~~~trd~ElKrL~ylYl~~yak~~--P~--~~lL--avNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~~-----  126 (757)
T COG5096          61 IKNVATRDVELKRLLYLYLERYAKLK--PE--LALL--AVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELLG-----  126 (757)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHhccC--HH--HHHH--HHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHHH-----
Confidence            34556788999999999999988875  21  1221  4788899999999 9999999999987764  23222     


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCC
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  155 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  155 (454)
                      .+++.+.+++.++++.+|..|+.++.++-.-++   +...+.|.+..+..++ .+.++.+...|+.+|..+...
T Consensus       127 ~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         127 NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence            357899999999999999999999999975544   3444555566666666 889999999999999998755

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.08  E-value=0.00077  Score=64.71  Aligned_cols=291  Identities=12%  Similarity=0.112  Sum_probs=175.5

Q ss_pred             ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCC-hhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDY-PQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      +-|.|.|+..+.-|+.++.++-+.+   ....+     -+-+-++|.++++ +-++..|+.||..+...+|+..   -..
T Consensus       118 nDL~srn~~fv~LAL~~I~niG~re---~~ea~-----~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~---~~~  186 (938)
T KOG1077|consen  118 NDLSSRNPTFVCLALHCIANIGSRE---MAEAF-----ADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLV---NPG  186 (938)
T ss_pred             hhhhcCCcHHHHHHHHHHHhhccHh---HHHHh-----hhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcccc---Chh
Confidence            3456777777778888877775442   22222     2223366666553 5688899999999988665542   234


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc------------hhhhhhHHHHHHHHH
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN------------ERAKLSMLRNATWTL  149 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~------------~~~~~~~~~~a~~~L  149 (454)
                      +....++.+|.+.+..+...+...+-.++...++........ .+..|.+...            .-+.+-+....+.+|
T Consensus       187 ~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~-avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlL  265 (938)
T KOG1077|consen  187 EWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL-AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLL  265 (938)
T ss_pred             hHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH-HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHH
Confidence            688999999999888888888888888886655432211100 1222222221            013466777777777


Q ss_pred             HhhcCCCCCCChhhhhchHHHHHHhhcCC----C---hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCC
Q 012897          150 SNFCRGKPQPPFDQVRPALPALAQLVHSN----D---EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP  222 (454)
Q Consensus       150 ~~l~~~~~~~~~~~~~~~l~~l~~ll~~~----~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~  222 (454)
                      .++-...+.........++..++...+..    +   ...+...+.-..+++.+-+..-+ ++. ..+..|-+++.+.+.
T Consensus       266 q~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~-ll~-~~~~~Lg~fls~rE~  343 (938)
T KOG1077|consen  266 QIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPE-LLS-RAVNQLGQFLSHRET  343 (938)
T ss_pred             HhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHH-HHH-HHHHHHHHHhhcccc
Confidence            77632222222333344555554444421    1   12233334434444433332212 222 467788899999999


Q ss_pred             cchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHh
Q 012897          223 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLL  302 (454)
Q Consensus       223 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll  302 (454)
                      .+|.-++..++.++.... ....+-. . ...++..|+...+..+|+.|+-.|-.+|..+  +.+     .++..|++.+
T Consensus       344 NiRYLaLEsm~~L~ss~~-s~davK~-h-~d~Ii~sLkterDvSirrravDLLY~mcD~~--Nak-----~IV~elLqYL  413 (938)
T KOG1077|consen  344 NIRYLALESMCKLASSEF-SIDAVKK-H-QDTIINSLKTERDVSIRRRAVDLLYAMCDVS--NAK-----QIVAELLQYL  413 (938)
T ss_pred             cchhhhHHHHHHHHhccc-hHHHHHH-H-HHHHHHHhccccchHHHHHHHHHHHHHhchh--hHH-----HHHHHHHHHH
Confidence            999999999999997532 3333322 2 7888999996658899999999999998632  222     2455567777


Q ss_pred             hhcchhhHHHHHHHH
Q 012897          303 QNAEFDIKKEAAWAI  317 (454)
Q Consensus       303 ~~~~~~v~~~a~~aL  317 (454)
                      ..-++.+|+...-=+
T Consensus       414 ~tAd~sireeivlKv  428 (938)
T KOG1077|consen  414 ETADYSIREEIVLKV  428 (938)
T ss_pred             hhcchHHHHHHHHHH
Confidence            666666665544433

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=0.0027  Score=64.07  Aligned_cols=262  Identities=13%  Similarity=0.101  Sum_probs=158.8

Q ss_pred             cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhh
Q 012897           38 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRC  116 (454)
Q Consensus        38 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~  116 (454)
                      ++++..|.+.+++.+ ..++-.|+..++.++...|..   + ...++...+.++.- +++..-..++.+|+.++...--.
T Consensus       340 E~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~~---L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl  414 (1133)
T KOG1943|consen  340 EFVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPPE---L-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL  414 (1133)
T ss_pred             HHHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcHH---H-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence            357888889999999 799999999999999866622   2 12356667776654 34666668999999998533211


Q ss_pred             HHHHHhcCChHHHHHHhchh-------hhhhHHHHHHHHHHhhcCCCCCCCh-hhhhchHHH-HHHhhcCCChhHHHHHH
Q 012897          117 RDLVLSQGALIPLLAQLNER-------AKLSMLRNATWTLSNFCRGKPQPPF-DQVRPALPA-LAQLVHSNDEEVLTDAC  187 (454)
Q Consensus       117 ~~~~~~~~~i~~l~~~l~~~-------~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~l~~-l~~ll~~~~~~v~~~a~  187 (454)
                      -..+.  .+++.+++-+..+       ....+|..||.+++.+++....... .......+. +...+-+.+-.+|+.|.
T Consensus       415 ps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAs  492 (1133)
T KOG1943|consen  415 PSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAAS  492 (1133)
T ss_pred             hHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHH
Confidence            11111  1355566555322       2457999999999999987522211 122223332 22334456677788888


Q ss_pred             HHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhH
Q 012897          188 WALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSI  267 (454)
Q Consensus       188 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v  267 (454)
                      .++....-..... .     .+++ |+...+.-....|.++...++.-....+.+.+.+++    +.+.+-+.+- +..+
T Consensus       493 AAlqE~VGR~~n~-p-----~Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~----~L~t~Kv~HW-d~~i  560 (1133)
T KOG1943|consen  493 AALQENVGRQGNF-P-----HGIS-LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN----HLLTKKVCHW-DVKI  560 (1133)
T ss_pred             HHHHHHhccCCCC-C-----Cchh-hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH----HHHhcccccc-cHHH
Confidence            8886654321111 0     1111 222222223345566655565555555544444333    2223336677 8899


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897          268 KKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS  322 (454)
Q Consensus       268 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  322 (454)
                      |+.++++|.+++...++.    .....++.++......+...+.-+..+.+.++.
T Consensus       561 relaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~  611 (1133)
T KOG1943|consen  561 RELAAYALHKLSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG  611 (1133)
T ss_pred             HHHHHHHHHHHHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence            999999999988755543    235678888888888877777655555555544

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.04  E-value=0.0015  Score=63.65  Aligned_cols=286  Identities=14%  Similarity=0.132  Sum_probs=167.8

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChh
Q 012897           83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD  162 (454)
Q Consensus        83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  162 (454)
                      ..+.+-.++.+..+.+.-.+++++.++....+.  ....   .+..+--++ +.+...+|..|..+|..++...|.....
T Consensus       246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r--~l~p---avs~Lq~fl-ssp~~~lRfaAvRtLnkvAm~~P~~v~~  319 (865)
T KOG1078|consen  246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR--ELAP---AVSVLQLFL-SSPKVALRFAAVRTLNKVAMKHPQAVTV  319 (865)
T ss_pred             HHHHHHHHHhchhHHHHHHHHHHHhhccccCHh--hcch---HHHHHHHHh-cCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence            455566667777777777888888887543321  1111   233333333 6777888888888888888765332211


Q ss_pred             hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccc
Q 012897          163 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ  242 (454)
Q Consensus       163 ~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  242 (454)
                          +-.-|-.++.+.+-.+-..|...|..-.  .......++     ..+..++.+-+.+.+.-+..++..+|...+. 
T Consensus       320 ----cN~elE~lItd~NrsIat~AITtLLKTG--~e~sv~rLm-----~qI~~fv~disDeFKivvvdai~sLc~~fp~-  387 (865)
T KOG1078|consen  320 ----CNLDLESLITDSNRSIATLAITTLLKTG--TESSVDRLM-----KQISSFVSDISDEFKIVVVDAIRSLCLKFPR-  387 (865)
T ss_pred             ----cchhHHhhhcccccchhHHHHHHHHHhc--chhHHHHHH-----HHHHHHHHhccccceEEeHHHHHHHHhhccH-
Confidence                1223445555555555555555554432  222333232     2333333333344444444445555543331 


Q ss_pred             hhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897          243 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS  322 (454)
Q Consensus       243 ~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  322 (454)
                          ...+.+..|..+|+....-+.++....++..+...+++..     ..++..|+..+.+.  +...-+...|.-+..
T Consensus       388 ----k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsK-----e~~L~~LCefIEDc--e~~~i~~rILhlLG~  456 (865)
T KOG1078|consen  388 ----KHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSK-----ERGLEHLCEFIEDC--EFTQIAVRILHLLGK  456 (865)
T ss_pred             ----HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchh-----hHHHHHHHHHHHhc--cchHHHHHHHHHHhc
Confidence                2235677888888765466788888888888887666544     34566788888754  233334555554444


Q ss_pred             CCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcC
Q 012897          323 GGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH  402 (454)
Q Consensus       323 ~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~  402 (454)
                      .++..    ......+..+.....-.+..++..++.+|.++...++...                  ....-.+.+.+++
T Consensus       457 EgP~a----~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~------------------~sI~vllkRc~~D  514 (865)
T KOG1078|consen  457 EGPKA----PNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLL------------------PSILVLLKRCLND  514 (865)
T ss_pred             cCCCC----CCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCcc------------------ccHHHHHHHHhcC
Confidence            32111    0122356666666666788999999999999983222211                  2223457788999


Q ss_pred             CCHHHHHHHHHHHHHhc
Q 012897          403 DNNEIYEKAVKILETYW  419 (454)
Q Consensus       403 ~~~~v~~~a~~~l~~~~  419 (454)
                      .+.+++++|.-.+..+.
T Consensus       515 ~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  515 SDDEVRDRATFYLKNLE  531 (865)
T ss_pred             chHHHHHHHHHHHHHhh
Confidence            99999999988887666

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.04  E-value=0.0041  Score=62.32  Aligned_cols=303  Identities=17%  Similarity=0.155  Sum_probs=181.9

Q ss_pred             HHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhc------CC-CChhHHHHHHHHHHHhcCC--CchhhHHHHhCCCh
Q 012897           14 LEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLM------RE-DYPQLQFEAAWALTNIASG--TSENTKVVIDHGAV   84 (454)
Q Consensus        14 ~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~------~~-~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~g~i   84 (454)
                      .+|...+..+.+..+.+..     .++++.+++.+.      .+ +++.-+..|+.++++++..  .+..-+..++.=++
T Consensus       390 ~Aa~~~l~~~~~KR~ke~l-----~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv  464 (1010)
T KOG1991|consen  390 TAALDFLTTLVSKRGKETL-----PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLV  464 (1010)
T ss_pred             HHHHHHHHHHHHhcchhhh-----hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHH
Confidence            3556666666655423332     356777777777      22 2367788889999988851  11121222233346


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC---h
Q 012897           85 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP---F  161 (454)
Q Consensus        85 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~---~  161 (454)
                      +.+...++++.--+|..|+|+++.++...-.  ....-..++....+.+..+.+-.|+..|+.+|..+..+.+...   .
T Consensus       465 ~hVfP~f~s~~g~Lrarac~vl~~~~~~df~--d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~  542 (1010)
T KOG1991|consen  465 NHVFPEFQSPYGYLRARACWVLSQFSSIDFK--DPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS  542 (1010)
T ss_pred             HHhhHhhcCchhHHHHHHHHHHHHHHhccCC--ChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh
Confidence            6677778888899999999999999843322  2222223466777777567888999999999999998864332   2


Q ss_pred             hhhhchHHHHHHhhcCCChhHHHHHHHHH-HHhccCChHHHHHHHHhCcHHHHHHhcCC---CCC---cchhhHHHHHhH
Q 012897          162 DQVRPALPALAQLVHSNDEEVLTDACWAL-SYLSDGTNDKIQAVIEAGVCPRLVELLGH---PSP---SVLIPALRTVGN  234 (454)
Q Consensus       162 ~~~~~~l~~l~~ll~~~~~~v~~~a~~~L-~~l~~~~~~~~~~~~~~~~i~~L~~ll~~---~~~---~v~~~a~~~L~~  234 (454)
                      ....+.++.++++.+..+.+....++..+ +..+..-......+.. .+...+.+++..   .++   +-...|..+|..
T Consensus       543 ~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~T  621 (1010)
T KOG1991|consen  543 AHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRT  621 (1010)
T ss_pred             hhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHH
Confidence            33455666666777665555555544433 3333322222222222 566667777763   222   223344444443


Q ss_pred             hh---ccCccchh--hhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhh
Q 012897          235 IV---TGDDFQTQ--CIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDI  309 (454)
Q Consensus       235 l~---~~~~~~~~--~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v  309 (454)
                      +.   ..-+....  .-++..+++.+-.+|++. -.++-++++..+.++....++.-..+.  ++++.+.+.+.....+-
T Consensus       622 i~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dy  698 (1010)
T KOG1991|consen  622 ISTILLSLENHPEVLKQLEPIVLPVIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDY  698 (1010)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHH
Confidence            33   21111111  122335667777777777 777888888888877764433322333  46777888887777777


Q ss_pred             HHHHHHHHHHhcCCCCHH
Q 012897          310 KKEAAWAISNATSGGTHE  327 (454)
Q Consensus       310 ~~~a~~aL~~l~~~~~~~  327 (454)
                      -....-+|.|+...+.+.
T Consensus       699 f~d~~~~l~N~vt~g~~~  716 (1010)
T KOG1991|consen  699 FTDMMPALHNYVTYGTPS  716 (1010)
T ss_pred             HHHHHHHHhhheeeCchh
Confidence            788888999888877653

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=0.0021  Score=58.42  Aligned_cols=239  Identities=13%  Similarity=0.138  Sum_probs=162.9

Q ss_pred             HHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC-----c----hhhHHHHhCCChHHH
Q 012897           17 TTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT-----S----ENTKVVIDHGAVPIF   87 (454)
Q Consensus        17 ~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~-----~----~~~~~~~~~g~i~~L   87 (454)
                      ++.+.-++..  +...-.+++.+.++.|+.+|.+.+ .++....+..|..++..+     .    ...+.+++.++++.|
T Consensus       105 IQ~mhvlAt~--PdLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL  181 (536)
T KOG2734|consen  105 IQEMHVLATM--PDLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL  181 (536)
T ss_pred             HHHHHhhhcC--hHHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence            3334444433  344446788999999999999999 899999999999998632     2    345667788999999


Q ss_pred             HHhhCCCCH------HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc-hhhhhhHHHHHHHHHHhhcCCCCC-C
Q 012897           88 VKLLASPSD------DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN-ERAKLSMLRNATWTLSNFCRGKPQ-P  159 (454)
Q Consensus        88 ~~lL~~~~~------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~-~  159 (454)
                      ++.+..-++      .-..+++..+-|+....+.....+.+.|.+.-|+..+. ...-..-..++..++.-+..+... .
T Consensus       182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~  261 (536)
T KOG2734|consen  182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENR  261 (536)
T ss_pred             HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhh
Confidence            998865332      33456677888998888888888888888888777553 223445667788888888777632 2


Q ss_pred             ChhhhhchHHHHHHhh----cCC-----ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHH
Q 012897          160 PFDQVRPALPALAQLV----HSN-----DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALR  230 (454)
Q Consensus       160 ~~~~~~~~l~~l~~ll----~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~  230 (454)
                      ...-.-.++..++.-+    .++     ..+..++...+|+.+.... .+...++...+++...-+++. ....+..+++
T Consensus       262 ~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~-~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Salk  339 (536)
T KOG2734|consen  262 KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAP-ANRERFLKGEGLQLMNLMLRE-KKVSRGSALK  339 (536)
T ss_pred             hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcCh-hhhhhhhccccHHHHHHHHHH-HHHhhhhHHH
Confidence            2222223444444333    222     2456777778888776554 445667777777766666655 5566788999


Q ss_pred             HHhHhhccCc--cchhhhhccCChHHHHHhhc
Q 012897          231 TVGNIVTGDD--FQTQCIITYGALPYLLGLLT  260 (454)
Q Consensus       231 ~L~~l~~~~~--~~~~~~~~~~~l~~L~~~L~  260 (454)
                      +|-....+.+  ..+..+++..++..++..+.
T Consensus       340 vLd~am~g~~gt~~C~kfVe~lGLrtiF~~FM  371 (536)
T KOG2734|consen  340 VLDHAMFGPEGTPNCNKFVEILGLRTIFPLFM  371 (536)
T ss_pred             HHHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence            9988887766  45666777777777666653

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.01  E-value=0.0066  Score=55.37  Aligned_cols=262  Identities=12%  Similarity=0.077  Sum_probs=179.7

Q ss_pred             HHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCC---C-------hhhhhchHHHHH
Q 012897          103 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP---P-------FDQVRPALPALA  172 (454)
Q Consensus       103 ~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~---~-------~~~~~~~l~~l~  172 (454)
                      +.-+.-++ ..|..-..+++.++++.++.+| .+.+.++....+..+..|+..+...   .       .....++++.|+
T Consensus       105 IQ~mhvlA-t~PdLYp~lveln~V~slL~LL-gHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv  182 (536)
T KOG2734|consen  105 IQEMHVLA-TMPDLYPILVELNAVQSLLELL-GHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV  182 (536)
T ss_pred             HHHHHhhh-cChHHHHHHHHhccHHHHHHHh-cCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence            33344444 4455667888999999999999 8888999999999999998776111   1       112356777777


Q ss_pred             HhhcCCChh------HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--CCCcchhhHHHHHhHhhccCccchh
Q 012897          173 QLVHSNDEE------VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLIPALRTVGNIVTGDDFQTQ  244 (454)
Q Consensus       173 ~ll~~~~~~------v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~  244 (454)
                      +-+..-|..      -....+..+-|+..-.+......++.|++..|+..+..  +-......|..+++-+...+.+...
T Consensus       183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~  262 (536)
T KOG2734|consen  183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRK  262 (536)
T ss_pred             HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhh
Confidence            776543333      35667778888888888888888888999998886643  3445667777888888877766666


Q ss_pred             hhhccCChHHHHHhhc-----CCc---chhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHH
Q 012897          245 CIITYGALPYLLGLLT-----HSH---KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWA  316 (454)
Q Consensus       245 ~~~~~~~l~~L~~~L~-----~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a  316 (454)
                      .+-...++..+++-+.     ++.   ..+.-.+..-+|+.+... +.++..+++..++..+.-+++. ....+..+..+
T Consensus       263 ~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~-~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Salkv  340 (536)
T KOG2734|consen  263 LLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMA-PANRERFLKGEGLQLMNLMLRE-KKVSRGSALKV  340 (536)
T ss_pred             hhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcC-hhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHH
Confidence            6666778888887762     211   234555666667666655 5666677766677655444444 56677888888


Q ss_pred             HHHhcCCCC-HHHHHHHHHcCCcHHHhhccC-C---------CCHHHHHHHHHHHHHHHHhhh
Q 012897          317 ISNATSGGT-HEQIKYLVREGCIKPLCDLFV-C---------PDPRIVTVCLEGLENILKVGE  368 (454)
Q Consensus       317 L~~l~~~~~-~~~~~~l~~~~~i~~L~~~l~-~---------~~~~v~~~al~~L~~l~~~~~  368 (454)
                      |-....+.. .+.+..+.+-.++..+...+- .         ...+.-++.+..|..+++...
T Consensus       341 Ld~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~~  403 (536)
T KOG2734|consen  341 LDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNLD  403 (536)
T ss_pred             HHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhcc
Confidence            988776532 366777777777776666543 1         223567788888888887653

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.99  E-value=2.3e-05  Score=56.61  Aligned_cols=87  Identities=29%  Similarity=0.438  Sum_probs=69.4

Q ss_pred             HHHHHHhh-cCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 012897           41 VPRFVEFL-MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL  119 (454)
Q Consensus        41 l~~L~~lL-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~  119 (454)
                      ++.|++.| ++++ +.+|..++++|+.+-.  +         ..++.|..+++++++.+|..++++|+.+-  .      
T Consensus         1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--~------   60 (88)
T PF13646_consen    1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG--D------   60 (88)
T ss_dssp             HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH--H------
T ss_pred             CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC--C------
Confidence            57899999 6666 9999999999995432  1         35899999999999999999999999883  1      


Q ss_pred             HHhcCChHHHHHHhchhhhhhHHHHHHHHHH
Q 012897          120 VLSQGALIPLLAQLNERAKLSMLRNATWTLS  150 (454)
Q Consensus       120 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~  150 (454)
                         ...++.|.+++.++.+..++..+..+|+
T Consensus        61 ---~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 ---PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             ---HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence               1258889998866667778888888774

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.97  E-value=1e-05  Score=52.39  Aligned_cols=55  Identities=25%  Similarity=0.600  Sum_probs=47.8

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHh
Q 012897          265 KSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA  320 (454)
Q Consensus       265 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  320 (454)
                      +.+|..|+|+|++++...++...... ..+++.|+.+++++++.||..|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            46899999999998887777776655 56899999999999889999999999875

...

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.96  E-value=0.0012  Score=65.26  Aligned_cols=316  Identities=12%  Similarity=0.082  Sum_probs=189.7

Q ss_pred             cCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChH
Q 012897            6 WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVP   85 (454)
Q Consensus         6 ~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~   85 (454)
                      .++-|.+...+.+.+.+.++..  .....+. .-.+...+..+.-...+-++..|+++++..++  ...... ...+++.
T Consensus       460 ~~e~P~Ll~Ra~~~i~~fs~~~--~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~-~~p~ild  533 (1005)
T KOG2274|consen  460 YQESPFLLLRAFLTISKFSSST--VINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLS-LQPMILD  533 (1005)
T ss_pred             cccCHHHHHHHHHHHHHHHhhh--ccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccc-cchHHHH
Confidence            4556777778888888777652  1111111 11344555555555547889999999888884  222211 1246778


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHh-chhhhhhHHHHHHHHHHhhcCCCCCCChhhh
Q 012897           86 IFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQL-NERAKLSMLRNATWTLSNFCRGKPQPPFDQV  164 (454)
Q Consensus        86 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  164 (454)
                      .|.++....+.++....+.+|+..+..+|+.... .+..+.+....+. ....++.+...+-.++..++... ...-.+.
T Consensus       534 ~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~  611 (1005)
T KOG2274|consen  534 GLLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYGPMQ  611 (1005)
T ss_pred             HHHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HhhcchH
Confidence            8888888888999999999999999888865433 3334455555544 35567777777777777777642 2333344


Q ss_pred             hchHHHHHHhhcCCC----hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCCcchhhHHHHHhHhhccC
Q 012897          165 RPALPALAQLVHSND----EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGD  239 (454)
Q Consensus       165 ~~~l~~l~~ll~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~  239 (454)
                      ..++|.+++.+..++    .....-++..|..+.++.+.-....+-.-++|.+.++.-+ ++......+-.||..+....
T Consensus       612 e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~  691 (1005)
T KOG2274|consen  612 ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVT  691 (1005)
T ss_pred             HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence            678999999998776    5566667777777776654333444444677888887644 56678888888888888654


Q ss_pred             ccchhhhhccCC------hHHHHHhhcCCcchhHHHHHHHHHHHHh----cCCHHHHHHHHhCCChH-HHHHHhhhcchh
Q 012897          240 DFQTQCIITYGA------LPYLLGLLTHSHKKSIKKEACWTISNIT----AGNRDQIQAVIDAGLVG-PLVNLLQNAEFD  308 (454)
Q Consensus       240 ~~~~~~~~~~~~------l~~L~~~L~~~~~~~v~~~a~~~L~nl~----~~~~~~~~~l~~~~~i~-~L~~ll~~~~~~  308 (454)
                      .++...--..++      +..+..+|..    ++-..++..++.+.    .+-+.-....++. ++. .+.++.+.+...
T Consensus       692 ~eq~~t~~~e~g~~~~yImqV~sqLLdp----~~sds~a~~VG~lV~tLit~a~~el~~n~d~-IL~Avisrmq~ae~ls  766 (1005)
T KOG2274|consen  692 LEQLLTWHDEPGHNLWYIMQVLSQLLDP----ETSDSAAAFVGPLVLTLITHASSELGPNLDQ-ILRAVISRLQQAETLS  766 (1005)
T ss_pred             HHHHHhhccCCCccHHHHHHHHHHHcCC----ccchhHHHHHhHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHhhhHH
Confidence            433221112222      2333344432    33334444444443    2222212221111 222 233444456788


Q ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHH
Q 012897          309 IKKEAAWAISNATSGGTHEQIKYLVR  334 (454)
Q Consensus       309 v~~~a~~aL~~l~~~~~~~~~~~l~~  334 (454)
                      +......++.++...........+.+
T Consensus       767 viQsLi~VfahL~~t~~~~~l~FL~S  792 (1005)
T KOG2274|consen  767 VIQSLIMVFAHLVHTDLDQLLNFLSS  792 (1005)
T ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence            88888999999987654444444433

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.93  E-value=0.00059  Score=66.28  Aligned_cols=260  Identities=14%  Similarity=0.153  Sum_probs=156.5

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh----
Q 012897           41 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC----  116 (454)
Q Consensus        41 l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~----  116 (454)
                      .+.+-.++.+.. ..+...|+.++.++...+......     .+..|-.+++++...+|..|.++|..++...|..    
T Consensus       247 ~~fl~s~l~~K~-emV~~EaArai~~l~~~~~r~l~p-----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~c  320 (865)
T KOG1078|consen  247 FPFLESCLRHKS-EMVIYEAARAIVSLPNTNSRELAP-----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVC  320 (865)
T ss_pred             HHHHHHHHhchh-HHHHHHHHHHHhhccccCHhhcch-----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccccc
Confidence            566777777777 788888888888877644333222     5677777778888888888888888887544321    


Q ss_pred             ----HHHHHhcC---ChHHHHHHhch---hhhhhHHHHHHHHHHhhcCCCCCCCh-----------hhhhchHHHHHHhh
Q 012897          117 ----RDLVLSQG---ALIPLLAQLNE---RAKLSMLRNATWTLSNFCRGKPQPPF-----------DQVRPALPALAQLV  175 (454)
Q Consensus       117 ----~~~~~~~~---~i~~l~~~l~~---~~~~~~~~~a~~~L~~l~~~~~~~~~-----------~~~~~~l~~l~~ll  175 (454)
                          ...+-..+   ....+..+|..   ..-..+.......+..++.+......           ......++.|..+|
T Consensus       321 N~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~L  400 (865)
T KOG1078|consen  321 NLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNML  400 (865)
T ss_pred             chhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence                11111111   11222333321   11223444444455555444311111           11134555666666


Q ss_pred             cC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHH
Q 012897          176 HS-NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPY  254 (454)
Q Consensus       176 ~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~  254 (454)
                      +. +.-+-..+...++..+....++...     .++..|..++.+.  +...-+.++|.-+....+.   .......+..
T Consensus       401 r~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc--e~~~i~~rILhlLG~EgP~---a~~Pskyir~  470 (865)
T KOG1078|consen  401 REEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC--EFTQIAVRILHLLGKEGPK---APNPSKYIRF  470 (865)
T ss_pred             HhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc--cchHHHHHHHHHHhccCCC---CCCcchhhHH
Confidence            54 3345566677777776665444433     3445566655443  3556667777777665442   2233456677


Q ss_pred             HHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897          255 LLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS  322 (454)
Q Consensus       255 L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  322 (454)
                      +.....-. +..+|..|..++.++...++..     ...+...|.+++.+.+.++|..|..++.++..
T Consensus       471 iyNRviLE-n~ivRaaAv~alaKfg~~~~~l-----~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~  532 (865)
T KOG1078|consen  471 IYNRVILE-NAIVRAAAVSALAKFGAQDVVL-----LPSILVLLKRCLNDSDDEVRDRATFYLKNLEE  532 (865)
T ss_pred             Hhhhhhhh-hhhhHHHHHHHHHHHhcCCCCc-----cccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence            77776666 8889999999999998544322     24566778888999999999999999988863

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.92  E-value=5.2e-05  Score=55.06  Aligned_cols=95  Identities=18%  Similarity=0.308  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccC
Q 012897          267 IKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV  346 (454)
Q Consensus       267 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~  346 (454)
                      .|+.++++|+.++.+-+......+ ..+++.++..+.+++++||..|+.+|.|++.....+...++.  .+.+.|..++.
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~--~IF~~L~kl~~   78 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFN--EIFDALCKLSA   78 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHc
Confidence            367788888888775555555555 358999999999999999999999999998865544444433  47888999999


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q 012897          347 CPDPRIVTVCLEGLENILK  365 (454)
Q Consensus       347 ~~~~~v~~~al~~L~~l~~  365 (454)
                      ++++.|+..+ +.|.++++
T Consensus        79 D~d~~Vr~~a-~~Ld~llk   96 (97)
T PF12755_consen   79 DPDENVRSAA-ELLDRLLK   96 (97)
T ss_pred             CCchhHHHHH-HHHHHHhc
Confidence            9999988665 67776654

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.90  E-value=2.4e-05  Score=56.51  Aligned_cols=87  Identities=32%  Similarity=0.471  Sum_probs=70.3

Q ss_pred             HHHHHHhh-cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhh
Q 012897          168 LPALAQLV-HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCI  246 (454)
Q Consensus       168 l~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  246 (454)
                      +|.|++.+ +++++.++..++++|+.+.   ..        ..++.|..+++++++.+|..|+++|+.+.          
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG---DP--------EAIPALIELLKDEDPMVRRAAARALGRIG----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT---HH--------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC---CH--------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence            57788888 8889999999999999542   11        45888999999999999999999999874          


Q ss_pred             hccCChHHHHHhhcCCcchhHHHHHHHHHH
Q 012897          247 ITYGALPYLLGLLTHSHKKSIKKEACWTIS  276 (454)
Q Consensus       247 ~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~  276 (454)
                       ....++.|..++.++.+..+|..|+.+|+
T Consensus        60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 -DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence             12467889999988746677999998875

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=0.045  Score=55.81  Aligned_cols=339  Identities=14%  Similarity=0.128  Sum_probs=186.7

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      .+.+++.|..++-.|++-+.++.+..+....+.+     +...++++.-.+.+..-+.|+.+|+.++...--.-..+  .
T Consensus       347 ls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~v-----i~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l--~  419 (1133)
T KOG1943|consen  347 LSALSDTDTVVRWSAAKGLGRVTSRLPPELADQV-----IGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLL--E  419 (1133)
T ss_pred             HHhccCCcchhhHHHHHHHHHHHccCcHHHHHHH-----HHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHH--H
Confidence            4678899999999999999999988643334444     44455655544435666789999999987321111111  1


Q ss_pred             CChHHHHHhhCC--------CCHHHHHHHHHHHHHhhCCChhh-HHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhh
Q 012897           82 GAVPIFVKLLAS--------PSDDVREQAVWALGNVAGDSPRC-RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF  152 (454)
Q Consensus        82 g~i~~L~~lL~~--------~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l  152 (454)
                      .++|.+++.|.-        ....+|..|+.+++.+++..... -+.+. ......|+....-+.+...|+.|..++-..
T Consensus       420 dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l-~~L~s~LL~~AlFDrevncRRAAsAAlqE~  498 (1133)
T KOG1943|consen  420 DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVL-QSLASALLIVALFDREVNCRRAASAALQEN  498 (1133)
T ss_pred             HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHH-HHHHHHHHHHHhcCchhhHhHHHHHHHHHH
Confidence            356666665532        34679999999999887433221 11111 112223332222566778899999888877


Q ss_pred             cCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh-cCCCCCcchhhHHHH
Q 012897          153 CRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LGHPSPSVLIPALRT  231 (454)
Q Consensus       153 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~  231 (454)
                      .....+..     .+++. +...+--.-..+.++-..++.-....+.....+     +..++.. +.+=++.+|+.+.++
T Consensus       499 VGR~~n~p-----~Gi~L-is~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~-----f~~L~t~Kv~HWd~~irelaa~a  567 (1133)
T KOG1943|consen  499 VGRQGNFP-----HGISL-ISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPV-----FNHLLTKKVCHWDVKIRELAAYA  567 (1133)
T ss_pred             hccCCCCC-----Cchhh-hhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHH-----HHHHHhcccccccHHHHHHHHHH
Confidence            65532221     11111 111111112223333333333222333333322     3333332 455578899999999


Q ss_pred             HhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHH---HHHHHh---CC---ChHHHHHHh
Q 012897          232 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ---IQAVID---AG---LVGPLVNLL  302 (454)
Q Consensus       232 L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~---~~~l~~---~~---~i~~L~~ll  302 (454)
                      |.+++...+    .......++.++....+. +...|.....+.+.+.......   ...+.+   .+   +++.+....
T Consensus       568 L~~Ls~~~p----k~~a~~~L~~lld~~ls~-~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~  642 (1133)
T KOG1943|consen  568 LHKLSLTEP----KYLADYVLPPLLDSTLSK-DASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRY  642 (1133)
T ss_pred             HHHHHHhhH----HhhcccchhhhhhhhcCC-ChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHH
Confidence            999886544    234457778888888888 8888877766666555321110   001111   12   233333322


Q ss_pred             h-hc-chhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 012897          303 Q-NA-EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV  366 (454)
Q Consensus       303 ~-~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~  366 (454)
                      - .+ ..-.+...+..+.++..... .....+...+.-..+.+.+..++ .++..+.+++..++..
T Consensus       643 ~~rg~~~lmr~~~~~~Ie~~s~s~~-~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~  706 (1133)
T KOG1943|consen  643 FYRGQGTLMRQATLKFIEQLSLSKD-RLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVST  706 (1133)
T ss_pred             hccchHHHHHHHHHHHHHHhhhccc-hhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHH
Confidence            2 22 24455666677777766433 33333333344445555554344 7888888888888653

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.85  E-value=0.016  Score=59.41  Aligned_cols=236  Identities=12%  Similarity=0.045  Sum_probs=145.7

Q ss_pred             HHHHhchhhhhhHHHHHHHHHHhhcCCCCCC--ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHH
Q 012897          129 LLAQLNERAKLSMLRNATWTLSNFCRGKPQP--PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIE  206 (454)
Q Consensus       129 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  206 (454)
                      +.....++.+..++..+..+|..++..++..  .......+...+..-+++.....+...+.||..+....+.....++.
T Consensus       658 v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~  737 (1176)
T KOG1248|consen  658 VDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP  737 (1176)
T ss_pred             hhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            3333435557889999999999999873221  22233455666677777778888899999998887665522222333


Q ss_pred             hCcHHHHHHhcCCCCCcchhhHHHHHhHhhc--c-----CccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHh
Q 012897          207 AGVCPRLVELLGHPSPSVLIPALRTVGNIVT--G-----DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT  279 (454)
Q Consensus       207 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~-----~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~  279 (454)
                       ..++.++-.+++.+...|..+..+|..++.  .     ++. ....++ .++..+...+-.. ...+......++..+.
T Consensus       738 -k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~ln-efl~~Isagl~gd-~~~~~as~Ivai~~il  813 (1176)
T KOG1248|consen  738 -KLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILN-EFLSIISAGLVGD-STRVVASDIVAITHIL  813 (1176)
T ss_pred             -HHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHH-HHHHHHHhhhccc-HHHHHHHHHHHHHHHH
Confidence             334444444488888889998888888873  1     111 011111 2333333333333 3333333244444444


Q ss_pred             cCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHH
Q 012897          280 AGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEG  359 (454)
Q Consensus       280 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~  359 (454)
                      .........-.-.+++..+.-++.++.++++..|...+.-++..-+...... ....+++.+..++++...+++.++...
T Consensus       814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~-~~~~LL~sll~ls~d~k~~~r~Kvr~L  892 (1176)
T KOG1248|consen  814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSP-HLEELLPSLLALSHDHKIKVRKKVRLL  892 (1176)
T ss_pred             HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhh-hHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            3111111111113456667777888899999999999999988765444332 333478888888888889999999999


Q ss_pred             HHHHHHhhhh
Q 012897          360 LENILKVGEA  369 (454)
Q Consensus       360 L~~l~~~~~~  369 (454)
                      |..+++....
T Consensus       893 lekLirkfg~  902 (1176)
T KOG1248|consen  893 LEKLIRKFGA  902 (1176)
T ss_pred             HHHHHHHhCH
Confidence            9999887553

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.83  E-value=8.9e-05  Score=67.76  Aligned_cols=303  Identities=17%  Similarity=0.180  Sum_probs=169.6

Q ss_pred             HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC-----CCchhhHHHHhCCCh
Q 012897           10 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS-----GTSENTKVVIDHGAV   84 (454)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~-----~~~~~~~~~~~~g~i   84 (454)
                      ..+|++|...|.-++...   ....+.-..+...+...+.... |.++..+..++..+..     ..|+..+.-...|.+
T Consensus       269 s~~rle~~qvl~~~a~~~---~~~~~~~~~l~RvI~~~~~~~~-p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~f  344 (728)
T KOG4535|consen  269 SPMRLEALQVLTLLARYF---SMTQAYLMELGRVICKCMGEAD-PSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPF  344 (728)
T ss_pred             chhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHccCCCCC-hHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccH
Confidence            467888888888877653   1122222334555666677778 9999999999888764     223333322222322


Q ss_pred             HHHHH-------hhCCCCHHHHHHHHHHHHHhhCCC----hhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhc
Q 012897           85 PIFVK-------LLASPSDDVREQAVWALGNVAGDS----PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC  153 (454)
Q Consensus        85 ~~L~~-------lL~~~~~~v~~~a~~~L~~l~~~~----~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  153 (454)
                      -.++-       .-++..+..+...+..+.++....    +..+..     ....+..-..++++.-++..|..++..+.
T Consensus       345 w~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T-----~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyV  419 (728)
T KOG4535|consen  345 WTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQT-----LCITFLLGCNDSKNRLVKAAASRALGVYV  419 (728)
T ss_pred             HHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchh-----hhHHHHhcccchHHHHHHHHHHhhceeEE
Confidence            22111       112234566667777777775321    110100     11122222223444556777777777776


Q ss_pred             CCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC----ChH---HHHHHHHhCcHHHHHHhc---CCCCC
Q 012897          154 RGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG----TND---KIQAVIEAGVCPRLVELL---GHPSP  222 (454)
Q Consensus       154 ~~~-~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~----~~~---~~~~~~~~~~i~~L~~ll---~~~~~  222 (454)
                      -++ -.........+...+...+.+..-..+..+.|+++|++..    .+.   ....+.. -.+..++..-   ...+.
T Consensus       420 LHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~d  498 (728)
T KOG4535|consen  420 LHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKD  498 (728)
T ss_pred             eccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhh
Confidence            665 2333344456666777777777778899999999998732    111   1121211 2233333332   22467


Q ss_pred             cchhhHHHHHhHhhccCccc----hhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHH-HHhCCChHH
Q 012897          223 SVLIPALRTVGNIVTGDDFQ----TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQA-VIDAGLVGP  297 (454)
Q Consensus       223 ~v~~~a~~~L~~l~~~~~~~----~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~-l~~~~~i~~  297 (454)
                      .|+.++.++|+|+...-+..    ...+++ +-+..+...--.+....||.++|.+++|+..+..--.+. -....+++.
T Consensus       499 kV~~navraLgnllQvlq~i~~~~~~e~~~-~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~  577 (728)
T KOG4535|consen  499 KVKSNAVRALGNLLQFLQPIEKPTFAEIIE-ESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNA  577 (728)
T ss_pred             hhhhHHHHHHhhHHHHHHHhhhccHHHHHH-HHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHH
Confidence            89999999999998532211    111111 222222222222226789999999999999742210000 011335778


Q ss_pred             HHHHhhh-cchhhHHHHHHHHHHhcCC
Q 012897          298 LVNLLQN-AEFDIKKEAAWAISNATSG  323 (454)
Q Consensus       298 L~~ll~~-~~~~v~~~a~~aL~~l~~~  323 (454)
                      |..++.+ .+.+||.+|+.+|..-...
T Consensus       578 L~~Lv~~~~NFKVRi~AA~aL~vp~~r  604 (728)
T KOG4535|consen  578 LTSLVTSCKNFKVRIRAAAALSVPGKR  604 (728)
T ss_pred             HHHHHHHhccceEeehhhhhhcCCCCc
Confidence            8888766 5899999999999876654

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.82  E-value=0.0041  Score=59.46  Aligned_cols=229  Identities=15%  Similarity=0.142  Sum_probs=143.9

Q ss_pred             ccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCC-----CChhHHHHHHHHHHHhcCCCchhhHHHH
Q 012897            5 VWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-----DYPQLQFEAAWALTNIASGTSENTKVVI   79 (454)
Q Consensus         5 L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~   79 (454)
                      ..+.++.+..+|+++|.|++-.. +...+.+.+.|..+.++..|+..     + .++..-..+.|.-++...+..+..++
T Consensus        41 ~~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~-~d~~Fl~~RLLFLlTa~~~~~~~~L~  118 (446)
T PF10165_consen   41 FESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQP-SDVEFLDSRLLFLLTALRPDDRKKLI  118 (446)
T ss_pred             ccCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCC-hhHHHHHHHHHHHHhcCChhHHHHHH
Confidence            45678999999999999999886 55677788999999999999987     4 78889999999998887788887777


Q ss_pred             hC-CChHHHHHhhCC---------C--------CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhch------
Q 012897           80 DH-GAVPIFVKLLAS---------P--------SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE------  135 (454)
Q Consensus        80 ~~-g~i~~L~~lL~~---------~--------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~------  135 (454)
                      +. +++..+...|..         .        +......++.++.|+..+.+.... -.....++.++.++..      
T Consensus       119 ~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~  197 (446)
T PF10165_consen  119 EEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPP  197 (446)
T ss_pred             HHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCC
Confidence            65 777777776521         1        345566788889998755443222 0112234445444422      


Q ss_pred             --hhhhhHHHHHHHHHHhhcCCCCC------------CChhhhhchHHHHHHhhc----CC----ChhHHHHHHHHHHHh
Q 012897          136 --RAKLSMLRNATWTLSNFCRGKPQ------------PPFDQVRPALPALAQLVH----SN----DEEVLTDACWALSYL  193 (454)
Q Consensus       136 --~~~~~~~~~a~~~L~~l~~~~~~------------~~~~~~~~~l~~l~~ll~----~~----~~~v~~~a~~~L~~l  193 (454)
                        .+.......++.+|.++-.....            .........+..++.+|+    ..    ..+.....+.+|.++
T Consensus       198 ~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~  277 (446)
T PF10165_consen  198 SSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRL  277 (446)
T ss_pred             CCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHH
Confidence              12345677777777777221100            000111334455555553    21    235677788888888


Q ss_pred             ccCChHHHHHHHHhCc-----------------HHHHHHhcCCCCCcchhhHHHHHhHhhc
Q 012897          194 SDGTNDKIQAVIEAGV-----------------CPRLVELLGHPSPSVLIPALRTVGNIVT  237 (454)
Q Consensus       194 ~~~~~~~~~~~~~~~~-----------------i~~L~~ll~~~~~~v~~~a~~~L~~l~~  237 (454)
                      +...... +..++..+                 -..|+.++.++.+.++..+...+..+|.
T Consensus       278 ~~~~~~~-Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~  337 (446)
T PF10165_consen  278 ARAAREV-RKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK  337 (446)
T ss_pred             HHhcHHH-HHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence            8776443 44444433                 3345555555555555555555555553

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.77  E-value=0.00029  Score=69.52  Aligned_cols=189  Identities=19%  Similarity=0.141  Sum_probs=130.0

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh-------------HHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHH
Q 012897           84 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRC-------------RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS  150 (454)
Q Consensus        84 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-------------~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~  150 (454)
                      -..++.+|++  +++-..+..++.-+..+++..             |+.+. ..++|.+++... ......+..-..+|.
T Consensus       817 a~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~-t~~~~~K~~yl~~Ls  892 (1030)
T KOG1967|consen  817 AEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFE-TAPGSQKHNYLEALS  892 (1030)
T ss_pred             HHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhc-cCCccchhHHHHHHH
Confidence            3455555554  334444555555555444332             22322 235777777774 455667777788888


Q ss_pred             hhcCCCCCCC-hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC---Ccchh
Q 012897          151 NFCRGKPQPP-FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS---PSVLI  226 (454)
Q Consensus       151 ~l~~~~~~~~-~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~---~~v~~  226 (454)
                      +...+-|... .......+|.|++.|.-+|..++..++.++.-+....+.....-+. .+++.++.+-.+++   ..+|.
T Consensus       893 hVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~  971 (1030)
T KOG1967|consen  893 HVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVRE  971 (1030)
T ss_pred             HHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHH
Confidence            8887644322 2234678899999999999999999999998877655544333333 57777877776655   57899


Q ss_pred             hHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHH
Q 012897          227 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI  278 (454)
Q Consensus       227 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl  278 (454)
                      .|+.||..+.+..|...-......++..|.+.|+++ ..-+|++|..+=.+.
T Consensus       972 ~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen  972 DALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQNW 1022 (1030)
T ss_pred             HHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhhh
Confidence            999999999996665554556668899999999999 888999998765544

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.75  E-value=0.00012  Score=66.97  Aligned_cols=275  Identities=20%  Similarity=0.154  Sum_probs=150.2

Q ss_pred             ccccCCCHHHHHHHHHHHHHHhccCC----CCcHHHHHHcCCHHHHH------Hh-hcCCCChhHHHHHHHHHHHhcCCC
Q 012897            3 AGVWSDDSSLQLEATTQFRKLLSIER----SPPIEEVIQSGVVPRFV------EF-LMREDYPQLQFEAAWALTNIASGT   71 (454)
Q Consensus         3 ~~L~s~d~~~~~~a~~~L~~l~~~~~----~~~~~~~~~~~~l~~L~------~l-L~~~~~~~v~~~a~~~L~~l~~~~   71 (454)
                      .++...+|.++..+++.+.++..+..    ++..+.-...+-+-.+.      .. -.+.. +..+..++..+.++....
T Consensus       302 ~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~-~Tl~~s~Cdals~i~~~~  380 (728)
T KOG4535|consen  302 KCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEH-PTLQASACDALSSILPEA  380 (728)
T ss_pred             ccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcC-CCchhHHHHHHhhcCchh
Confidence            35667789999999999998864421    22222111122111111      11 11222 456667777777776522


Q ss_pred             chhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHh
Q 012897           72 SENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN  151 (454)
Q Consensus        72 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  151 (454)
                      .+....=.....+..+..+-++.+.-++..|++.++-+.-+.........-.+....++..+ .+..-..+..+.|++++
T Consensus       381 f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl-~d~~ln~r~Kaawtlgn  459 (728)
T KOG4535|consen  381 FSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSL-EDKSLNVRAKAAWSLGN  459 (728)
T ss_pred             hcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHh-hhHhHhHHHHHHHHhhh
Confidence            11110000011122222222345566777888888777655443333444444556666666 55567789999999999


Q ss_pred             hcCCC----CCCChhhh--h-chHHHHHHhh---cCCChhHHHHHHHHHHHhccCChHH----HHHHHHhCcHHHHHHh-
Q 012897          152 FCRGK----PQPPFDQV--R-PALPALAQLV---HSNDEEVLTDACWALSYLSDGTNDK----IQAVIEAGVCPRLVEL-  216 (454)
Q Consensus       152 l~~~~----~~~~~~~~--~-~~l~~l~~ll---~~~~~~v~~~a~~~L~~l~~~~~~~----~~~~~~~~~i~~L~~l-  216 (454)
                      ++..-    |.......  . ..+..+...-   .-.+.+|+.++.++|+|+..--+..    ...+.+ +-+..+... 
T Consensus       460 ITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~-~~~~~l~~~v  538 (728)
T KOG4535|consen  460 ITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIE-ESIQALISTV  538 (728)
T ss_pred             hHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHH-HHHHhcccce
Confidence            97542    22222211  1 1222222211   1246789999999999987421111    011122 112222222 


Q ss_pred             cCCCCCcchhhHHHHHhHhhccCcc-chhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897          217 LGHPSPSVLIPALRTVGNIVTGDDF-QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  280 (454)
Q Consensus       217 l~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~  280 (454)
                      .......|+.++|.+++|+..+..- ....-+.....+.|..++.+..+.++|..|+.+|.--..
T Consensus       539 ~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~  603 (728)
T KOG4535|consen  539 LTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK  603 (728)
T ss_pred             ecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence            2335678999999999999975432 122223335667788888776688999999999876654

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.74  E-value=0.067  Score=56.54  Aligned_cols=389  Identities=11%  Similarity=0.023  Sum_probs=195.2

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      +..|..+-..+|-.|+++|..+....+.-..+..+..    .+-.-+.++. ..||+.|+..++......++....++  
T Consensus       822 l~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~----~Vh~R~~Dss-asVREAaldLvGrfvl~~~e~~~qyY--  894 (1692)
T KOG1020|consen  822 LSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQE----AVHGRLNDSS-ASVREAALDLVGRFVLSIPELIFQYY--  894 (1692)
T ss_pred             HHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHH----HHHHhhccch-hHHHHHHHHHHhhhhhccHHHHHHHH--
Confidence            4567777899999999999999877422222323333    3334445566 79999999999987765666554443  


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc--hhhhhhHHHHHHHHHHhhcCCCCCC
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN--ERAKLSMLRNATWTLSNFCRGKPQP  159 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~~~~~a~~~L~~l~~~~~~~  159 (454)
                         ..+..-+.++...||..+++.+..+|...|.+...      +....+++.  .++...++..++.++..+...+...
T Consensus       895 ---~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i------~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~  965 (1692)
T KOG1020|consen  895 ---DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI------VDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPE  965 (1692)
T ss_pred             ---HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH------HHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCc
Confidence               44555566788999999999999999887765333      333444443  3334458999999999998876222


Q ss_pred             --ChhhhhchHHHHH-------HhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhcC---------
Q 012897          160 --PFDQVRPALPALA-------QLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLG---------  218 (454)
Q Consensus       160 --~~~~~~~~l~~l~-------~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~i~~L~~ll~---------  218 (454)
                        .......-++..+       .+.....+.+..+.+..-....  .......+...   ..+..+.+++.         
T Consensus       966 ~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~--~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~ 1043 (1692)
T KOG1020|consen  966 VNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKT--MKESVKPVALAKVTHVLNLLTHCLVEKISEVESD 1043 (1692)
T ss_pred             ccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhh--hhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhH
Confidence              1111111122111       1122223333333322211110  01111111111   12222222221         


Q ss_pred             ---CCCCcc-hhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCC----cchhHHHHHHHHHHHHhc---CCHHHHH
Q 012897          219 ---HPSPSV-LIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS----HKKSIKKEACWTISNITA---GNRDQIQ  287 (454)
Q Consensus       219 ---~~~~~v-~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~----~~~~v~~~a~~~L~nl~~---~~~~~~~  287 (454)
                         .++..+ ..+.+.+|..++.-.+.    ++....+..|.+.|.+.    ...++-...+.++....-   ..++.. 
T Consensus      1044 ~~~~~~~~~~~~~~lstL~~FskirP~----Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesf- 1118 (1692)
T KOG1020|consen 1044 DMNEEESEVRLLAYLSTLFVFSKIRPQ----LLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESF- 1118 (1692)
T ss_pred             hhhcccchhHHHHHHHHHHHHHhcCch----hccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHH-
Confidence               112222 33455566666654442    22223444455555433    233344444444443332   111111 


Q ss_pred             HHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCC--CCHHHHHHHHH--cCCcHHHhhccCCC----CHHHHHHHHHH
Q 012897          288 AVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSG--GTHEQIKYLVR--EGCIKPLCDLFVCP----DPRIVTVCLEG  359 (454)
Q Consensus       288 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~l~~--~~~i~~L~~~l~~~----~~~v~~~al~~  359 (454)
                        + ..+=..|+.++..........|.-+++.++..  .+........+  -+.++.+-.-..+.    ........+.+
T Consensus      1119 --L-~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~Rsift 1195 (1692)
T KOG1020|consen 1119 --L-ASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFT 1195 (1692)
T ss_pred             --H-HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHH
Confidence              1 11233445555444445555666666666552  12222222111  01222222221112    22344567777


Q ss_pred             HHHHHHhhhhhhhccCCcccc-cHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 012897          360 LENILKVGEAEKNMGTATADV-NQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW  419 (454)
Q Consensus       360 L~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~  419 (454)
                      ++-++++++.....  ..|.. ..+.. ....+++..|..++.+.+.+++.+|..-+..++
T Consensus      1196 lG~l~Ryfdf~~~~--~~g~~~~~~~~-~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~c 1253 (1692)
T KOG1020|consen 1196 LGLLSRYFDFPKPS--NDGKTFLQEGE-TLKEKVLILLMYFSKDKDGELRRKALINLGFIC 1253 (1692)
T ss_pred             HHHHHHhccCCCcc--CCCccchhhhh-hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            77777765543321  11111 11222 233566677777777777888888877766544

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.74  E-value=0.00022  Score=51.70  Aligned_cols=67  Identities=16%  Similarity=0.354  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHHHHHh
Q 012897           56 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA--SPSDDVREQAVWALGNVAGDSPRCRDLVLS  122 (454)
Q Consensus        56 v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  122 (454)
                      ++...+++|++++..++...+.+.+.|+++.+++...  ..+|-++++|++++.+++..+++.+..+..
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            4567789999999999999999999999999999754  578999999999999999999988777655

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.72  E-value=4.9e-05  Score=49.12  Aligned_cols=55  Identities=31%  Similarity=0.497  Sum_probs=47.5

Q ss_pred             hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHh
Q 012897          180 EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI  235 (454)
Q Consensus       180 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  235 (454)
                      +.++..++++|++++...+....... ..+++.|..+|.++++.||..|+++|+++
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            46899999999999988777766544 48999999999999999999999999875

...

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.70  E-value=0.0041  Score=63.57  Aligned_cols=242  Identities=12%  Similarity=0.101  Sum_probs=151.2

Q ss_pred             HHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh--CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hhHHHH
Q 012897           44 FVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID--HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP-RCRDLV  120 (454)
Q Consensus        44 L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~  120 (454)
                      +.....+.++..+|..+..+|..++.. +.......+  ..+.+.|..-+++.....+...+.+|..|....+ .....+
T Consensus       658 v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i  736 (1176)
T KOG1248|consen  658 VDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI  736 (1176)
T ss_pred             hhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            344444443389999999999999984 333322222  1344555556666667778888888888775444 222222


Q ss_pred             HhcCChHHHHHHhchhhhhhHHHHHHHHHHhhc--CCC----CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 012897          121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFC--RGK----PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS  194 (454)
Q Consensus       121 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~--~~~----~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~  194 (454)
                      . . .++-++-.+ ++.+...++.+..+|..++  ...    ..+.......+++.+...+-.+...+....+.++..+.
T Consensus       737 ~-k-~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il  813 (1176)
T KOG1248|consen  737 P-K-LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL  813 (1176)
T ss_pred             H-H-HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence            2 2 233333333 6677888888888888887  221    22224455667777766655554444444355555555


Q ss_pred             cCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHH
Q 012897          195 DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWT  274 (454)
Q Consensus       195 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~  274 (454)
                      .........-.-.+++..+..+|.+++++++..|+..+..++...+...-......+++.++.+++.. ...+|..+-..
T Consensus       814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~L  892 (1176)
T KOG1248|consen  814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLL  892 (1176)
T ss_pred             HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence            33222222222235677777888999999999999999999987765433333335788888888877 88888888888


Q ss_pred             HHHHhc-CCHHHHHHHH
Q 012897          275 ISNITA-GNRDQIQAVI  290 (454)
Q Consensus       275 L~nl~~-~~~~~~~~l~  290 (454)
                      +-.++. ...+.++.++
T Consensus       893 lekLirkfg~~eLe~~~  909 (1176)
T KOG1248|consen  893 LEKLIRKFGAEELESFL  909 (1176)
T ss_pred             HHHHHHHhCHHHHHhhC
Confidence            888876 3344444444

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.68  E-value=0.0048  Score=58.78  Aligned_cols=300  Identities=16%  Similarity=0.119  Sum_probs=165.8

Q ss_pred             CHHHHHHHHHHHHHHhccCCCC----cHHHHHHcCCHHHHHHhhcCCC------ChhHHHHHHHHHHHhcCCCc-hhhHH
Q 012897            9 DSSLQLEATTQFRKLLSIERSP----PIEEVIQSGVVPRFVEFLMRED------YPQLQFEAAWALTNIASGTS-ENTKV   77 (454)
Q Consensus         9 d~~~~~~a~~~L~~l~~~~~~~----~~~~~~~~~~l~~L~~lL~~~~------~~~v~~~a~~~L~~l~~~~~-~~~~~   77 (454)
                      +.+.-...+..|..++......    ......+..+++.+.++.....      ++.+...+..++..+...-+ +....
T Consensus        56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~  135 (415)
T PF12460_consen   56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE  135 (415)
T ss_pred             ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            4556667777777776554222    2333444457887777664331      13455555555555555222 22222


Q ss_pred             HHhCCChHHHHHhhC----------CCC--HHHHHHHHHHHHH-hhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHH
Q 012897           78 VIDHGAVPIFVKLLA----------SPS--DDVREQAVWALGN-VAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRN  144 (454)
Q Consensus        78 ~~~~g~i~~L~~lL~----------~~~--~~v~~~a~~~L~~-l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~  144 (454)
                      +     +..+..++.          ..+  .......+..+.. ++.-++...-. .....+..++.+.....++..+..
T Consensus       136 ~-----~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~  209 (415)
T PF12460_consen  136 I-----LDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP-DLEELLQSLLNLALSSEDEFSRLA  209 (415)
T ss_pred             H-----HHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc-CHHHHHHHHHHHHHcCCChHHHHH
Confidence            2     233333222          111  1112222222222 22222222111 111246667777656667888888


Q ss_pred             HHHHHHhhcCCCCCCChhhhhchHHHHHHhh-cCCChhHHHHHHHHH----HHhccCChHHHHHHHHhCcHHHHHHhcCC
Q 012897          145 ATWTLSNFCRGKPQPPFDQVRPALPALAQLV-HSNDEEVLTDACWAL----SYLSDGTNDKIQAVIEAGVCPRLVELLGH  219 (454)
Q Consensus       145 a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~v~~~a~~~L----~~l~~~~~~~~~~~~~~~~i~~L~~ll~~  219 (454)
                      ++.+++.+.-.-+...  ....++..+..-+ ...++..+..++..+    ..+.-.......     ..+..++.++.+
T Consensus       210 ~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~  282 (415)
T PF12460_consen  210 ALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSS  282 (415)
T ss_pred             HHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCC
Confidence            8888888875422222  3345555555444 333333344444443    333322222222     345667788876


Q ss_pred             CCCcchhhHHHHHhHhhccCcc--------chhhhhcc----CChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHH
Q 012897          220 PSPSVLIPALRTVGNIVTGDDF--------QTQCIITY----GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ  287 (454)
Q Consensus       220 ~~~~v~~~a~~~L~~l~~~~~~--------~~~~~~~~----~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~  287 (454)
                        +++...+.+.++-+....+.        ..+.+.+.    .++|.+++..+.. +...|.....+|+++..+.|..+-
T Consensus       283 --~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~ALs~ll~~vP~~vl  359 (415)
T PF12460_consen  283 --PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTALSHLLKNVPKSVL  359 (415)
T ss_pred             --hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHHHHHhhCCHHHH
Confidence              66788888888888876332        12222222    3466677777766 556888889999999986554332


Q ss_pred             HHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCC
Q 012897          288 AVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG  324 (454)
Q Consensus       288 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  324 (454)
                      .---..++|.|++.+..++.+++..++.+|..+....
T Consensus       360 ~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  360 LPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            1112458999999999999999999999999998865

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.67  E-value=0.0061  Score=51.84  Aligned_cols=256  Identities=17%  Similarity=0.199  Sum_probs=154.1

Q ss_pred             HHHHHHhhcCCC-ChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 012897           41 VPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL  119 (454)
Q Consensus        41 l~~L~~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~  119 (454)
                      +..+.+.|.+.+ ...-+..|+..|.++...           +.+..+.+...+.+...+...+.+|+......      
T Consensus         5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~-----------~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~~------   67 (289)
T KOG0567|consen    5 IETIGNILVNKSQPLQNRFRALFNLRNLLGP-----------AAIKAITKAFIDDSALLKHELAYVLGQMQDED------   67 (289)
T ss_pred             HHHHHHHHcCccHHHHHHHHHHHhhhccCCh-----------HHHHHHHHhcccchhhhccchhhhhhhhccch------
Confidence            344555555533 123355666666666551           22566666666666677777778888775322      


Q ss_pred             HHhcCChHHHHHHhch-hhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 012897          120 VLSQGALIPLLAQLNE-RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN  198 (454)
Q Consensus       120 ~~~~~~i~~l~~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~  198 (454)
                           .++.++..+.. +..+-++..|..+|..+..          ...++.+-+..+++-..++..+..++..+-..+.
T Consensus        68 -----Av~~l~~vl~desq~pmvRhEAaealga~~~----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~  132 (289)
T KOG0567|consen   68 -----AVPVLVEVLLDESQEPMVRHEAAEALGAIGD----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDI  132 (289)
T ss_pred             -----hhHHHHHHhcccccchHHHHHHHHHHHhhcc----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhc
Confidence                 36677777643 3456677788888888772          2556677777766677777777777766543211


Q ss_pred             HHHH----HH--H------HhCcHHHHHHhcCCCC-C-cchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcc
Q 012897          199 DKIQ----AV--I------EAGVCPRLVELLGHPS-P-SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHK  264 (454)
Q Consensus       199 ~~~~----~~--~------~~~~i~~L~~ll~~~~-~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~  264 (454)
                      ....    ..  .      ..+-+..+-..+.+.. + --|..|+..|.|+..           ...+..+.+-+..+ +
T Consensus       133 ~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~-----------EeaI~al~~~l~~~-S  200 (289)
T KOG0567|consen  133 IDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT-----------EEAINALIDGLADD-S  200 (289)
T ss_pred             cccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc-----------HHHHHHHHHhcccc-h
Confidence            0000    00  0      0011222222222211 1 113344444444321           12355677778888 8


Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhh--cchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHh
Q 012897          265 KSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN--AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLC  342 (454)
Q Consensus       265 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~  342 (454)
                      .-.|.+++++++.+-+.           -.++.|.+.|..  +++-||..|+.||+.++..   +         +++.|.
T Consensus       201 alfrhEvAfVfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e---~---------~~~vL~  257 (289)
T KOG0567|consen  201 ALFRHEVAFVFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADE---D---------CVEVLK  257 (289)
T ss_pred             HHHHHHHHHHHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH---H---------HHHHHH
Confidence            88999999999988542           257778887765  4889999999999999751   2         467777


Q ss_pred             hccCCCCHHHHHHHHHHHHHH
Q 012897          343 DLFVCPDPRIVTVCLEGLENI  363 (454)
Q Consensus       343 ~~l~~~~~~v~~~al~~L~~l  363 (454)
                      +.+.++.+-|++.|.-+|.-.
T Consensus       258 e~~~D~~~vv~esc~valdm~  278 (289)
T KOG0567|consen  258 EYLGDEERVVRESCEVALDML  278 (289)
T ss_pred             HHcCCcHHHHHHHHHHHHHHH
Confidence            888888888887776666544

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.64  E-value=0.0058  Score=60.65  Aligned_cols=244  Identities=16%  Similarity=0.096  Sum_probs=156.3

Q ss_pred             HHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 012897           43 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVL  121 (454)
Q Consensus        43 ~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  121 (454)
                      .+...+..+..|.+...+.+++...+........ +.. -++...+..+. +..+.++..++++++..|+... . ... 
T Consensus       453 ~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~-~~~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v-l-~~~-  527 (1005)
T KOG2274|consen  453 MIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQ-LLQ-HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKV-L-LSL-  527 (1005)
T ss_pred             HHHhhcccccCHHHHHHHHHHHHHHHhhhccchh-HHH-HHHHHHHHhhccCCCCchhHHHHHHHHhccCcee-c-ccc-
Confidence            3334444444477777888888877763222211 111 13344444443 3557778888888888773221 1 110 


Q ss_pred             hcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhc--CCChhHHHHHHHHHHHhccCChH
Q 012897          122 SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH--SNDEEVLTDACWALSYLSDGTND  199 (454)
Q Consensus       122 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~--~~~~~v~~~a~~~L~~l~~~~~~  199 (454)
                      .-+++..|.++. ...+.++......+|+..+..++.........+.|..+.++.  ++||.+...+-.++..++.... 
T Consensus       528 ~p~ild~L~qla-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~-  605 (1005)
T KOG2274|consen  528 QPMILDGLLQLA-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAA-  605 (1005)
T ss_pred             chHHHHHHHHHc-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH-
Confidence            112455666666 666788999999999999998877767777778887777653  5678777777777776664321 


Q ss_pred             HHHHHHHhCcHHHHHHhcCCCC----CcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHH
Q 012897          200 KIQAVIEAGVCPRLVELLGHPS----PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI  275 (454)
Q Consensus       200 ~~~~~~~~~~i~~L~~ll~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L  275 (454)
                      +...+. ...+|.+++.+..+.    .....-++..|..+.++.+.-....+-.-..+.+.++.-+..+..+-..+..+|
T Consensus       606 ~~g~m~-e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcL  684 (1005)
T KOG2274|consen  606 NYGPMQ-ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECL  684 (1005)
T ss_pred             hhcchH-HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHH
Confidence            112222 367899999998765    556677888888888876544333333456777777776554888899999999


Q ss_pred             HHHhcCCHHHHHHHHhCCC
Q 012897          276 SNITAGNRDQIQAVIDAGL  294 (454)
Q Consensus       276 ~nl~~~~~~~~~~l~~~~~  294 (454)
                      +.+...+.++....-..+.
T Consensus       685 ra~Is~~~eq~~t~~~e~g  703 (1005)
T KOG2274|consen  685 RALISVTLEQLLTWHDEPG  703 (1005)
T ss_pred             HHHHhcCHHHHHhhccCCC
Confidence            9988866666555544333

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.61  E-value=0.0019  Score=53.56  Aligned_cols=93  Identities=22%  Similarity=0.198  Sum_probs=75.8

Q ss_pred             ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHh
Q 012897          179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGL  258 (454)
Q Consensus       179 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~  258 (454)
                      ++.+|.+++.+++.++...+...+     ..++.+...|.++++.+|..|+.+|..|....--    -++..++..++.+
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i----k~k~~l~~~~l~~   71 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI----KVKGQLFSRILKL   71 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce----eehhhhhHHHHHH
Confidence            578999999999999977665444     6688999999999999999999999999864321    1223344778888


Q ss_pred             hcCCcchhHHHHHHHHHHHHhcC
Q 012897          259 LTHSHKKSIKKEACWTISNITAG  281 (454)
Q Consensus       259 L~~~~~~~v~~~a~~~L~nl~~~  281 (454)
                      +.++ ++.+|..|..++..+...
T Consensus        72 l~D~-~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   72 LVDE-NPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HcCC-CHHHHHHHHHHHHHHHHh
Confidence            8888 999999999999999875

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.54  E-value=0.0033  Score=57.16  Aligned_cols=202  Identities=13%  Similarity=0.103  Sum_probs=144.6

Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH-----HHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHh
Q 012897           77 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR-----DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN  151 (454)
Q Consensus        77 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-----~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  151 (454)
                      .+...+.+..|+..|..-+.+.|..+..++.++.......+     +.+.. ..-..+..++....++++.-.+...|+.
T Consensus        71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlRe  149 (335)
T PF08569_consen   71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGYENPDIALNCGDMLRE  149 (335)
T ss_dssp             HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHHH
Confidence            44556889999999999999999999999999886543332     23322 1133334444344567777777788888


Q ss_pred             hcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhcCCCCCcchhhH
Q 012897          152 FCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLGHPSPSVLIPA  228 (454)
Q Consensus       152 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~i~~L~~ll~~~~~~v~~~a  228 (454)
                      .+++............+..+......++-++...|..++..+-..+......++..   .++.....++.+++.-++..+
T Consensus       150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs  229 (335)
T PF08569_consen  150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS  229 (335)
T ss_dssp             HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred             HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence            87775444444456677778888999999999999999999877666665666654   356778888999999999999


Q ss_pred             HHHHhHhhccCccc---hhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897          229 LRTVGNIVTGDDFQ---TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  280 (454)
Q Consensus       229 ~~~L~~l~~~~~~~---~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~  280 (454)
                      +..|+.+.......   .+.+-+..-+..++.+|++. +..++.+|..++.-+..
T Consensus       230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVA  283 (335)
T PF08569_consen  230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVA  283 (335)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHh
Confidence            99999998644322   23344556789999999999 99999999999988776

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.53  E-value=0.0039  Score=63.64  Aligned_cols=146  Identities=17%  Similarity=0.172  Sum_probs=116.7

Q ss_pred             hhhchHHHHHHhhc----CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-CCCCcchhhHHHHHhHhhc
Q 012897          163 QVRPALPALAQLVH----SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLIPALRTVGNIVT  237 (454)
Q Consensus       163 ~~~~~l~~l~~ll~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~  237 (454)
                      ....+.|.++...+    ..+|+++.+|.-+|+.++.-+...+.     .-++.|+..+. ++++.+|.+++-+++-++.
T Consensus       916 lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav  990 (1251)
T KOG0414|consen  916 LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAV  990 (1251)
T ss_pred             HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhh
Confidence            44667888888885    45899999999999998865544333     45788888886 7899999999999999987


Q ss_pred             cCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHH
Q 012897          238 GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAI  317 (454)
Q Consensus       238 ~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL  317 (454)
                      ..+...+     ..-+.|...|.+. ++.+|+.|..+|++|....-     +--.|.++.+..++.+++.+++.-|-..+
T Consensus       991 ~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILndm-----iKVKGql~eMA~cl~D~~~~IsdlAk~FF 1059 (1251)
T KOG0414|consen  991 RFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILNDM-----IKVKGQLSEMALCLEDPNAEISDLAKSFF 1059 (1251)
T ss_pred             hcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhh-----hHhcccHHHHHHHhcCCcHHHHHHHHHHH
Confidence            6664433     4567899999999 99999999999999986422     22378999999999999999999888777


Q ss_pred             HHhcCCC
Q 012897          318 SNATSGG  324 (454)
Q Consensus       318 ~~l~~~~  324 (454)
                      ..+...+
T Consensus      1060 ~Els~k~ 1066 (1251)
T KOG0414|consen 1060 KELSSKG 1066 (1251)
T ss_pred             HHhhhcc
Confidence            7776654

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.51  E-value=0.0045  Score=60.12  Aligned_cols=219  Identities=13%  Similarity=0.094  Sum_probs=119.2

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhh
Q 012897           84 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ  163 (454)
Q Consensus        84 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  163 (454)
                      +..+..+|.+.++.++..|..+|.+++.+....+..      ...+++++.+.++..+.--.+.-|..+..    .....
T Consensus       245 i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~A------a~~~i~l~~kesdnnvklIvldrl~~l~~----~~~~i  314 (948)
T KOG1058|consen  245 IRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAA------ASTYIDLLVKESDNNVKLIVLDRLSELKA----LHEKI  314 (948)
T ss_pred             HHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHH------HHHHHHHHHhccCcchhhhhHHHHHHHhh----hhHHH
Confidence            444555555555555555555555554332211111      23344444333333333333333333331    12223


Q ss_pred             hhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccc
Q 012897          164 VRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ  242 (454)
Q Consensus       164 ~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  242 (454)
                      ..+.+--++.+|.++|-+++..++.....++.... ..+..+++..+...--. =.+.+...|..-++++..++...++.
T Consensus       315 l~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~Fp~~  393 (948)
T KOG1058|consen  315 LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKFPEV  393 (948)
T ss_pred             HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcChHH
Confidence            35566667788889999999999998888875432 22222222111111000 01123456778888888888766654


Q ss_pred             hhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhh-cchhhHHHHHHHHHHhc
Q 012897          243 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN-AEFDIKKEAAWAISNAT  321 (454)
Q Consensus       243 ~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~  321 (454)
                      ..     .+++.+++.+.+. ++..-......+.......|..+     ..++..|++-+.. ...++...|+|.++..+
T Consensus       394 aa-----tvV~~ll~fisD~-N~~aas~vl~FvrE~iek~p~Lr-----~~ii~~l~~~~~~irS~ki~rgalwi~GeYc  462 (948)
T KOG1058|consen  394 AA-----TVVSLLLDFISDS-NEAAASDVLMFVREAIEKFPNLR-----ASIIEKLLETFPQIRSSKICRGALWILGEYC  462 (948)
T ss_pred             HH-----HHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhCchHH-----HHHHHHHHHhhhhhcccccchhHHHHHHHHH
Confidence            44     5678899999888 76555555555555555444433     3345556655543 46677788888888777


Q ss_pred             CCC
Q 012897          322 SGG  324 (454)
Q Consensus       322 ~~~  324 (454)
                      ...
T Consensus       463 e~~  465 (948)
T KOG1058|consen  463 EGL  465 (948)
T ss_pred             hhh
Confidence            653

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.51  E-value=0.0039  Score=51.63  Aligned_cols=93  Identities=19%  Similarity=0.223  Sum_probs=74.1

Q ss_pred             CCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHH
Q 012897          221 SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN  300 (454)
Q Consensus       221 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~  300 (454)
                      ++.+|.+++.+++-++...+...+     ..++.+...|.++ ++.||+.|+.+|..|.....-..    +..++..++.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~   70 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDMIKV----KGQLFSRILK   70 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHH
Confidence            357899999999999976553333     6788999999999 99999999999999986422111    1233477888


Q ss_pred             HhhhcchhhHHHHHHHHHHhcCC
Q 012897          301 LLQNAEFDIKKEAAWAISNATSG  323 (454)
Q Consensus       301 ll~~~~~~v~~~a~~aL~~l~~~  323 (454)
                      ++.+++++++..|..++..+...
T Consensus        71 ~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   71 LLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHh
Confidence            88999999999999999999886

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.48  E-value=0.00028  Score=51.29  Aligned_cols=87  Identities=18%  Similarity=0.166  Sum_probs=65.4

Q ss_pred             HHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC
Q 012897          142 LRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS  221 (454)
Q Consensus       142 ~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~  221 (454)
                      +..++.+|...+..-+.........+++.++..+.+++..||.+|+.+|.+++.......-..+ ..++..|..++.+++
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~kl~~D~d   81 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF-NEIFDALCKLSADPD   81 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCc
Confidence            4455666666665544445556688999999999999999999999999999976543322222 378888999999999


Q ss_pred             CcchhhHH
Q 012897          222 PSVLIPAL  229 (454)
Q Consensus       222 ~~v~~~a~  229 (454)
                      +.|+..|.
T Consensus        82 ~~Vr~~a~   89 (97)
T PF12755_consen   82 ENVRSAAE   89 (97)
T ss_pred             hhHHHHHH
Confidence            99888773

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.45  E-value=0.022  Score=55.27  Aligned_cols=128  Identities=18%  Similarity=0.160  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC
Q 012897          141 MLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP  220 (454)
Q Consensus       141 ~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~  220 (454)
                      +...+...+..+-..+  .......+.+..+++...+++..||..+|..|..+.......-+.+++ ++...+...+.+.
T Consensus        62 Il~fla~fv~sl~q~d--~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn-~l~e~l~~Rl~Dr  138 (892)
T KOG2025|consen   62 ILSFLARFVESLPQLD--KEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFN-KLNEKLLIRLKDR  138 (892)
T ss_pred             HHHHHHHHHHhhhccC--chhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHH-HHHHHHHHHHhcc
Confidence            3444444444443332  223356778888888888999999999999999988744333233333 7778888888999


Q ss_pred             CCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHH
Q 012897          221 SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS  276 (454)
Q Consensus       221 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~  276 (454)
                      .+.||.+|+.+|+.+-......     +..+...+..+++.+++++||+.|+..+.
T Consensus       139 ep~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~  189 (892)
T KOG2025|consen  139 EPNVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNIS  189 (892)
T ss_pred             CchHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence            9999999999999987322111     12456788888887779999998866554

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.44  E-value=0.00044  Score=41.38  Aligned_cols=39  Identities=38%  Similarity=0.760  Sum_probs=35.6

Q ss_pred             chhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 012897           72 SENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA  110 (454)
Q Consensus        72 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~  110 (454)
                      ++.+..+.+.|+++.|+.++.++++.++..++++|.|++
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            346778889999999999999999999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.39  E-value=0.0081  Score=47.51  Aligned_cols=130  Identities=15%  Similarity=0.110  Sum_probs=102.4

Q ss_pred             HHHHHhCcHHHHHHhcCCCCC------cchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCc-chhHHHHHHHH
Q 012897          202 QAVIEAGVCPRLVELLGHPSP------SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWT  274 (454)
Q Consensus       202 ~~~~~~~~i~~L~~ll~~~~~------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~-~~~v~~~a~~~  274 (454)
                      ..+++.+++..|+.++.++..      .+...++.++..|..+.. .....++..++..+........ +..+...+...
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            557778999999999977552      566678888888887543 3344666678888888887653 57889999999


Q ss_pred             HHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHH
Q 012897          275 ISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYL  332 (454)
Q Consensus       275 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l  332 (454)
                      |-++...++.....+.+.-.++.|+..++..+++++.++...+..+...+++..++.+
T Consensus        84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i  141 (160)
T PF11841_consen   84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI  141 (160)
T ss_pred             HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            9999988777666666666799999999999999999999999999888776665543

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.39  E-value=0.024  Score=54.69  Aligned_cols=297  Identities=12%  Similarity=0.091  Sum_probs=146.8

Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 012897           42 PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVL  121 (454)
Q Consensus        42 ~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  121 (454)
                      ..++...+ ++ +..+..|+..+.......|+..+.     ++..++.+..+.+..||..|++.|..+|.++++....+ 
T Consensus        26 ~~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-   97 (556)
T PF05918_consen   26 KEILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-   97 (556)
T ss_dssp             HHHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-
T ss_pred             HHHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-
Confidence            34555555 45 789999999999999988887766     47899999999999999999999999999887765554 


Q ss_pred             hcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhc---CCChhHHHHHHHHHHHhcc-CC
Q 012897          122 SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH---SNDEEVLTDACWALSYLSD-GT  197 (454)
Q Consensus       122 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~---~~~~~v~~~a~~~L~~l~~-~~  197 (454)
                          ...|+++| ...++.-...+-.+|..+...++       .+.+..++..+.   +.++.+++.++..|..-.. -.
T Consensus        98 ----aDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~  165 (556)
T PF05918_consen   98 ----ADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLK  165 (556)
T ss_dssp             ----HHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-
T ss_pred             ----HHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCc
Confidence                56788888 45555545555555555554321       345555555554   5788899999988854321 11


Q ss_pred             hHHHH--HHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhcc----CccchhhhhccCChHHHHHhhc-----CCcchh
Q 012897          198 NDKIQ--AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG----DDFQTQCIITYGALPYLLGLLT-----HSHKKS  266 (454)
Q Consensus       198 ~~~~~--~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~~~~~~~~~~l~~L~~~L~-----~~~~~~  266 (454)
                      .+...  .-.+.-++..+...|.+-..+--...+.+|..+-..    .....+.     +++.+.....     ...+++
T Consensus       166 ~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qe-----Lv~ii~eQa~Ld~~f~~sD~e  240 (556)
T PF05918_consen  166 PELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQE-----LVDIIEEQADLDQPFDPSDPE  240 (556)
T ss_dssp             TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHH-----HHHHHHHHHTTTS---SSSHH
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHH-----HHHHHHHHhccCCCCCCcCHH
Confidence            11111  112223344555566542221122233334333321    1111111     2233332221     111333


Q ss_pred             HHHHHHHHHHH----Hhc--CCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHH
Q 012897          267 IKKEACWTISN----ITA--GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKP  340 (454)
Q Consensus       267 v~~~a~~~L~n----l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~  340 (454)
                      .-.....++..    ++.  .+.....++.+ .++|.+-.+    ..+.+...+.++..++..........++ ..+...
T Consensus       241 ~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L-~~i~~~  314 (556)
T PF05918_consen  241 SIDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLL-PSIFQL  314 (556)
T ss_dssp             HHHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT----THHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHH-HHHHHH
Confidence            33333333332    122  23344434443 466655554    4566777888888888765432222222 112233


Q ss_pred             HhhccCC--CCH----HHHHHHHHHHHHHHHhhhh
Q 012897          341 LCDLFVC--PDP----RIVTVCLEGLENILKVGEA  369 (454)
Q Consensus       341 L~~~l~~--~~~----~v~~~al~~L~~l~~~~~~  369 (454)
                      |...+-.  ..+    ..++..+.++.++.+..++
T Consensus       315 L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~  349 (556)
T PF05918_consen  315 LKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPN  349 (556)
T ss_dssp             HHTTS----------HHHHHHHHHHHHHHHTT-TH
T ss_pred             HHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence            3333322  223    3566777777777766554

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.37  E-value=0.017  Score=49.30  Aligned_cols=224  Identities=17%  Similarity=0.232  Sum_probs=138.9

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHH
Q 012897           41 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRD  118 (454)
Q Consensus        41 l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~  118 (454)
                      +..+.+...+.+ ...+...+.+|+....           ...++.|+..+..  ..+-+|..|..+|+.+.  .+.   
T Consensus        38 i~~i~ka~~d~s-~llkhe~ay~LgQ~~~-----------~~Av~~l~~vl~desq~pmvRhEAaealga~~--~~~---  100 (289)
T KOG0567|consen   38 IKAITKAFIDDS-ALLKHELAYVLGQMQD-----------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG--DPE---  100 (289)
T ss_pred             HHHHHHhcccch-hhhccchhhhhhhhcc-----------chhhHHHHHHhcccccchHHHHHHHHHHHhhc--chh---
Confidence            555666666555 5677777778777765           3568888888875  55888999999999985  222   


Q ss_pred             HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC-------------hhhhhchHHHHH-HhhcCCChhH-H
Q 012897          119 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP-------------FDQVRPALPALA-QLVHSNDEEV-L  183 (454)
Q Consensus       119 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~-------------~~~~~~~l~~l~-~ll~~~~~~v-~  183 (454)
                            ..+.+-++. +++..++++.+..++..+-.......             ......-+..+- .+++.+.+.. +
T Consensus       101 ------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~R  173 (289)
T KOG0567|consen  101 ------SLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFER  173 (289)
T ss_pred             ------hHHHHHHHh-cCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHH
Confidence                  234444444 56666666666666666543221000             001112233333 3333333333 4


Q ss_pred             HHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcC-C
Q 012897          184 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH-S  262 (454)
Q Consensus       184 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~-~  262 (454)
                      +.+...|.|+..  .+         .+..+..-+..++.-.|..+..+++++-..           -.++.|.+.|.. .
T Consensus       174 y~amF~LRn~g~--Ee---------aI~al~~~l~~~SalfrhEvAfVfGQl~s~-----------~ai~~L~k~L~d~~  231 (289)
T KOG0567|consen  174 YRAMFYLRNIGT--EE---------AINALIDGLADDSALFRHEVAFVFGQLQSP-----------AAIPSLIKVLLDET  231 (289)
T ss_pred             HhhhhHhhccCc--HH---------HHHHHHHhcccchHHHHHHHHHHHhhccch-----------hhhHHHHHHHHhhh
Confidence            556666666432  12         234455556667777899999999988642           235666666643 3


Q ss_pred             cchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhc
Q 012897          263 HKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT  321 (454)
Q Consensus       263 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  321 (454)
                      +++.||..|+.+|+.++.  ++         .++.|.+.+.++++-|++.+..+|.-+-
T Consensus       232 E~pMVRhEaAeALGaIa~--e~---------~~~vL~e~~~D~~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  232 EHPMVRHEAAEALGAIAD--ED---------CVEVLKEYLGDEERVVRESCEVALDMLE  279 (289)
T ss_pred             cchHHHHHHHHHHHhhcC--HH---------HHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            378999999999998864  33         3556777888888888888888876553

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.33  E-value=0.00065  Score=40.62  Aligned_cols=38  Identities=50%  Similarity=0.733  Sum_probs=34.4

Q ss_pred             HHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhc
Q 012897          284 DQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT  321 (454)
Q Consensus       284 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  321 (454)
                      +....+.+.|+++.|++++.+++++++..++|+|.|++
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            35667788999999999999889999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=97.30  E-value=0.035  Score=50.35  Aligned_cols=171  Identities=16%  Similarity=0.123  Sum_probs=112.4

Q ss_pred             CCHHHHH-HhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC-CChhh
Q 012897           39 GVVPRFV-EFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAG-DSPRC  116 (454)
Q Consensus        39 ~~l~~L~-~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~-~~~~~  116 (454)
                      ++++.|+ ..+++.+ +.+|+.|+.+|+-.+--+.+....     .++.+...++..++.++..|+.++..+.. +....
T Consensus        26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            3455554 6778888 899999999999999855543333     36778888877899999999999998762 22211


Q ss_pred             HHHH-------HhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhh-c---CCChhHHHH
Q 012897          117 RDLV-------LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV-H---SNDEEVLTD  185 (454)
Q Consensus       117 ~~~~-------~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll-~---~~~~~v~~~  185 (454)
                      -...       .....+..+.+.+ .+.+++++..++..++.|........   ...++..|+-+. .   .++..++..
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~  175 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC  175 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence            1111       1123455666666 55588899999999999987753333   233344333332 2   235677777


Q ss_pred             HHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC
Q 012897          186 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP  220 (454)
Q Consensus       186 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~  220 (454)
                      ...++-..+..++.+.. .+...+++.+..+...+
T Consensus       176 L~~Ffp~y~~s~~~~Q~-~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  176 LSVFFPVYASSSPENQE-RLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHcCCHHHHH-HHHHHHHHHHHHHHhCc
Confidence            77777777877776644 44446777777766543

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.29  E-value=0.0013  Score=47.84  Aligned_cols=67  Identities=18%  Similarity=0.308  Sum_probs=56.7

Q ss_pred             chhhHHHHHhHhhccCccchhhhhccCChHHHHHhhc-CCcchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 012897          224 VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT-HSHKKSIKKEACWTISNITAGNRDQIQAVI  290 (454)
Q Consensus       224 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~  290 (454)
                      ++...+.+|+|++..++.....+.+.++++.+++... ++.+|.+|+.|.+++.|++.+++++...+.
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~   69 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA   69 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            4667889999999999888888999999999998874 233889999999999999999888775554

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=97.24  E-value=0.024  Score=47.73  Aligned_cols=141  Identities=12%  Similarity=0.145  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCC----CChhHHHHHHHHHHHhcC-CCchhhHHHHhCCChHHHH
Q 012897           14 LEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE----DYPQLQFEAAWALTNIAS-GTSENTKVVIDHGAVPIFV   88 (454)
Q Consensus        14 ~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~   88 (454)
                      ..|+..|.-++++  ++....+.+..+--.+-.+|...    ..+-+|..++.+++.+.. ++.+....+...+++|..+
T Consensus        97 cnaL~LlQcvASH--pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL  174 (293)
T KOG3036|consen   97 CNALALLQCVASH--PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL  174 (293)
T ss_pred             HHHHHHHHHHhcC--cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence            4556555556666  67777787776555555555433    236789999999999998 5567778888999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhhCCChhhHHH------HHh-cCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC
Q 012897           89 KLLASPSDDVREQAVWALGNVAGDSPRCRDL------VLS-QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  156 (454)
Q Consensus        89 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~------~~~-~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  156 (454)
                      +.++.+++.-+..|+.++..+..++......      +.. ...+..++..+.+.++..+.+.++.+..+|+.++
T Consensus       175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp  249 (293)
T KOG3036|consen  175 RIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP  249 (293)
T ss_pred             HHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence            9999999999999999999988666433221      111 1134445555556778888888999888888763

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.18  E-value=0.0033  Score=62.47  Aligned_cols=192  Identities=18%  Similarity=0.144  Sum_probs=129.8

Q ss_pred             hHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCC---------C----ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHH
Q 012897          126 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ---------P----PFDQVRPALPALAQLVHSNDEEVLTDACWALSY  192 (454)
Q Consensus       126 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~---------~----~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~  192 (454)
                      ...++.++.   ++++-..+..++.-+..+.+.         .    +......++|.+++.+.+.....+..-+.+|.+
T Consensus       817 a~klld~Ls---~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~Lsh  893 (1030)
T KOG1967|consen  817 AEKLLDLLS---GPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSH  893 (1030)
T ss_pred             HHHHHHhcC---CccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHH
Confidence            344555552   345555566666666555421         1    122346788999999887777778888888888


Q ss_pred             hccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcc--hhHHHH
Q 012897          193 LSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHK--KSIKKE  270 (454)
Q Consensus       193 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~--~~v~~~  270 (454)
                      +..+-+...-.---..++|.|++.|.-++..+|..++.++..+....+.....-+ .-+++.++.+-++..+  ..+|..
T Consensus       894 Vl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR~~  972 (1030)
T KOG1967|consen  894 VLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLSSDNDNNMMVVRED  972 (1030)
T ss_pred             HHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcCCCCCcchhHHHHH
Confidence            8876654221111236788899999999999999999999998876553332222 2466777777666622  579999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhc
Q 012897          271 ACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT  321 (454)
Q Consensus       271 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  321 (454)
                      |..+|..+...-|...-......++..|...+.++..-||++|..+=.+..
T Consensus       973 ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen  973 ALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred             HHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence            999999999833332223334568888999999988899999988755543

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.18  E-value=0.086  Score=48.09  Aligned_cols=201  Identities=10%  Similarity=0.092  Sum_probs=142.5

Q ss_pred             hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH-----HHHHHHh--CcHHHHHHhcCCCCCcchhhHHHHHhHhhc
Q 012897          165 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDK-----IQAVIEA--GVCPRLVELLGHPSPSVLIPALRTVGNIVT  237 (454)
Q Consensus       165 ~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-----~~~~~~~--~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  237 (454)
                      .+.+..|+..|..-+-+.+..+.....++.+.....     .+.+.+.  .++..|+..-  +++++...+-..|..++.
T Consensus        75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k  152 (335)
T PF08569_consen   75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIK  152 (335)
T ss_dssp             HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTT
T ss_pred             hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHh
Confidence            578888888898889999999999998887653222     2223321  2333333333  456677777777777776


Q ss_pred             cCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhC---CChHHHHHHhhhcchhhHHHHH
Q 012897          238 GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDA---GLVGPLVNLLQNAEFDIKKEAA  314 (454)
Q Consensus       238 ~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~---~~i~~L~~ll~~~~~~v~~~a~  314 (454)
                      . +...+.++....+..+.+....+ +-++-..|..++..+....+.....++..   .++.....++.+++.-+|.+++
T Consensus       153 ~-e~l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl  230 (335)
T PF08569_consen  153 H-ESLAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL  230 (335)
T ss_dssp             S-HHHHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred             h-HHHHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence            4 44566778888888899999999 99999999999999877667666666643   3567788889999999999999


Q ss_pred             HHHHHhcCCCCHH--HHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhh
Q 012897          315 WAISNATSGGTHE--QIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEA  369 (454)
Q Consensus       315 ~aL~~l~~~~~~~--~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~  369 (454)
                      ..|+.+.......  ...++.+..-+..++.+|.++...++..|...+.-++....+
T Consensus       231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K  287 (335)
T PF08569_consen  231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK  287 (335)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-
T ss_pred             HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC
Confidence            9999998743221  134544566789999999999999999999888888765443

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.15  E-value=0.095  Score=48.93  Aligned_cols=269  Identities=14%  Similarity=0.124  Sum_probs=142.0

Q ss_pred             CCChHHHHHhh----CCCCHHHHHHHHHHHHHhhCCChh-hHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCC
Q 012897           81 HGAVPIFVKLL----ASPSDDVREQAVWALGNVAGDSPR-CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  155 (454)
Q Consensus        81 ~g~i~~L~~lL----~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  155 (454)
                      .|.+..++..+    .+++..+|..|++.|++.++..|. .+...  ...+..++.-|.++.+.+|+-.++.+|..+...
T Consensus       253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~--~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~  330 (533)
T KOG2032|consen  253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHK--TTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK  330 (533)
T ss_pred             cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhH--HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence            34444444433    457889999999999999987442 22221  224566666665677789999999998888765


Q ss_pred             CCCCChh-hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhcCCCCCcchhhHHHH
Q 012897          156 KPQPPFD-QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLGHPSPSVLIPALRT  231 (454)
Q Consensus       156 ~~~~~~~-~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~i~~L~~ll~~~~~~v~~~a~~~  231 (454)
                      ....... ..-.+.-.+..+..+.+++.+.++...++.++.-.....+.+...   +-...++-.++++++.+.. ||+.
T Consensus       331 ~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~  409 (533)
T KOG2032|consen  331 ASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRS  409 (533)
T ss_pred             hhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHH
Confidence            4222222 223344456678889999999999988888764322222222221   2223344445666665544 4555


Q ss_pred             HhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHH-HHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhH
Q 012897          232 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKK-EACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIK  310 (454)
Q Consensus       232 L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~-~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  310 (454)
                      ....+..+- ..+...  +.   +-+.++.. .+..+. ..-|+ ..+....++....+..     ...-++++.-+.++
T Consensus       410 ~~~~c~p~l-~rke~~--~~---~q~~ld~~-~~~~q~Fyn~~c-~~L~~i~~d~l~~~~t-----~~~~~f~sswe~vr  476 (533)
T KOG2032|consen  410 ELRTCYPNL-VRKELY--HL---FQESLDTD-MARFQAFYNQWC-IQLNHIHPDILMLLLT-----EDQHIFSSSWEQVR  476 (533)
T ss_pred             HHHhcCchh-HHHHHH--HH---HhhhhHHh-HHHHHHHHHHHH-HHHhhhCHHHHHHHHH-----hchhheecchHHHH
Confidence            544443221 111100  11   11112111 111111 11121 1222223333322221     12222333334555


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 012897          311 KEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILK  365 (454)
Q Consensus       311 ~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~  365 (454)
                      ..+...-.+....-.++.+.+.-...+...+..+...+-|+++..+..++..+..
T Consensus       477 ~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  477 EAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence            5555554555444344444443333455667777788889999999999887764

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.15  E-value=0.011  Score=46.82  Aligned_cols=127  Identities=14%  Similarity=0.091  Sum_probs=99.4

Q ss_pred             hHHHHHhcCChHHHHHHhchhhh-----hhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCC--ChhHHHHHHH
Q 012897          116 CRDLVLSQGALIPLLAQLNERAK-----LSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN--DEEVLTDACW  188 (454)
Q Consensus       116 ~~~~~~~~~~i~~l~~~l~~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~--~~~v~~~a~~  188 (454)
                      +...+...+++..|++++.++..     .++...++.++..|..+...........++..++..+...  +..+...++.
T Consensus         3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            34567788899999999965442     5788889999999988753344444567888888888654  6889999999


Q ss_pred             HHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccc
Q 012897          189 ALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ  242 (454)
Q Consensus       189 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  242 (454)
                      .|-+++.+++.....+.+.=-++.|+..|+.++++++..++..+-.+....++.
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~  136 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS  136 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence            999999988876666666566899999999999999999988887777655433

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.14  E-value=0.056  Score=50.36  Aligned_cols=153  Identities=14%  Similarity=0.178  Sum_probs=99.6

Q ss_pred             HHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHh-hhcchhhHHHHHHHHHHhcCCCCHHH-HHH
Q 012897          254 YLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLL-QNAEFDIKKEAAWAISNATSGGTHEQ-IKY  331 (454)
Q Consensus       254 ~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~a~~aL~~l~~~~~~~~-~~~  331 (454)
                      .+..-..++ +..+|..|+..|+|.+.+.|+.+...... .+..++.-| +..+.+|..++..+|..+........ ..+
T Consensus       262 ~la~ka~dp-~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~  339 (533)
T KOG2032|consen  262 SLANKATDP-SAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESY  339 (533)
T ss_pred             HHHHhccCc-hhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhh
Confidence            333344566 77899999999999999866655554432 344444444 44578999999999988876433222 222


Q ss_pred             HHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHH
Q 012897          332 LVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA  411 (454)
Q Consensus       332 l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a  411 (454)
                      +.  ++.-.+..++++.+++++..+...+..+.+......+..        |.+.+.  +...++.--++++++.+...+
T Consensus       340 ~l--~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~--------Fte~v~--k~~~~lllhl~d~~p~va~AC  407 (533)
T KOG2032|consen  340 LL--NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEF--------FTEQVK--KRLAPLLLHLQDPNPYVARAC  407 (533)
T ss_pred             ch--hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhh--------hHHHHH--hccccceeeeCCCChHHHHHH
Confidence            22  245567788999999999999999999988766543221        344332  222333333677888887777


Q ss_pred             HHHHHHhcC
Q 012897          412 VKILETYWL  420 (454)
Q Consensus       412 ~~~l~~~~~  420 (454)
                      ...+..+.+
T Consensus       408 r~~~~~c~p  416 (533)
T KOG2032|consen  408 RSELRTCYP  416 (533)
T ss_pred             HHHHHhcCc
Confidence            766665544

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=97.14  E-value=0.0078  Score=51.58  Aligned_cols=187  Identities=17%  Similarity=0.153  Sum_probs=122.6

Q ss_pred             CHHHHHHHHHHHHHHhccCCCCcHHHHH--HcCCHHHHHHh-------hcCCC-Ch---hHHHHHHHHHHHhcCCCchhh
Q 012897            9 DSSLQLEATTQFRKLLSIERSPPIEEVI--QSGVVPRFVEF-------LMRED-YP---QLQFEAAWALTNIASGTSENT   75 (454)
Q Consensus         9 d~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~~l~~L~~l-------L~~~~-~~---~v~~~a~~~L~~l~~~~~~~~   75 (454)
                      +++.|..|+..|.+-...  .+...-+.  .-|.+..|++=       +..+. .+   .-...|+..|-.++. .++.+
T Consensus         8 ~~~~Re~Al~eLsk~r~~--~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr   84 (262)
T PF04078_consen    8 NPETRENALLELSKKRES--FPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETR   84 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC---TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTH
T ss_pred             CcchHHHHHHHHHHhhhc--ccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHH
Confidence            678899998888876544  33333333  34666666542       23221 01   223344555556666 89999


Q ss_pred             HHHHhCCChHHHHHhhCCC-----CHHHHHHHHHHHHHhhC-CChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHH
Q 012897           76 KVVIDHGAVPIFVKLLASP-----SDDVREQAVWALGNVAG-DSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTL  149 (454)
Q Consensus        76 ~~~~~~g~i~~L~~lL~~~-----~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L  149 (454)
                      ..+++..+.-.|..+|+..     -+.+|-.++.+++.+.. ++++.-..+...++++..++.+ +..++-.+..|..++
T Consensus        85 ~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~m-e~GselSKtvAtfIl  163 (262)
T PF04078_consen   85 MPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIM-EFGSELSKTVATFIL  163 (262)
T ss_dssp             HHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHH-HHS-HHHHHHHHHHH
T ss_pred             HHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHH-HhccHHHHHHHHHHH
Confidence            9999999888888888652     36788999999999984 5566777888889999999999 556677777788888


Q ss_pred             HhhcCCCCC--------CChhhhhchHHHHH-HhhcCCChhHHHHHHHHHHHhccCChH
Q 012897          150 SNFCRGKPQ--------PPFDQVRPALPALA-QLVHSNDEEVLTDACWALSYLSDGTND  199 (454)
Q Consensus       150 ~~l~~~~~~--------~~~~~~~~~l~~l~-~ll~~~~~~v~~~a~~~L~~l~~~~~~  199 (454)
                      ..+..++..        ..+.....++..++ .+...+++.+..++++|...++.+...
T Consensus       164 qKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpra  222 (262)
T PF04078_consen  164 QKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRA  222 (262)
T ss_dssp             HHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTH
T ss_pred             HHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHH
Confidence            877766411        12222344444443 445677899999999999999977543

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.13  E-value=0.017  Score=56.83  Aligned_cols=239  Identities=14%  Similarity=0.089  Sum_probs=152.8

Q ss_pred             hHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHh-hcCCCCCCChhhhhchHHHHHHhhcCCC-hhHHHHHHHHHHHh
Q 012897          116 CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN-FCRGKPQPPFDQVRPALPALAQLVHSND-EEVLTDACWALSYL  193 (454)
Q Consensus       116 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~~~l~~l~~ll~~~~-~~v~~~a~~~L~~l  193 (454)
                      .+...+..|+...|+++. ....+..+.....+|.. +..     ........++.+.+.++... ..-...++.++.|+
T Consensus       496 ~~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~~~i~f-----~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnL  569 (748)
T KOG4151|consen  496 ERAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALAGKIDF-----PGERSYEVVKPLDSALHNDEKGLENFEALEALTNL  569 (748)
T ss_pred             hcCccccccHHHHHHHHH-HHhchHHHHHHHHHHhhhcCC-----CCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhcc
Confidence            344566677888888888 44455666666777762 111     11112344555555554332 22356788889999


Q ss_pred             ccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhc-cCChHHHHHhhcCCcchhHHHHHH
Q 012897          194 SDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT-YGALPYLLGLLTHSHKKSIKKEAC  272 (454)
Q Consensus       194 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~L~~~~~~~v~~~a~  272 (454)
                      +..+....+.+.+...++.+-.++..+++..+.+++..+.||.-++.-..+.+.+ ...++.....+... .......++
T Consensus       570 as~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a  648 (748)
T KOG4151|consen  570 ASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGA  648 (748)
T ss_pred             cCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhcc
Confidence            8777666666888778888888888899999999999999999876655555665 34556666666665 777777777


Q ss_pred             HHHHHHhcCCHHHHHH-HHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHH
Q 012897          273 WTISNITAGNRDQIQA-VIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR  351 (454)
Q Consensus       273 ~~L~nl~~~~~~~~~~-l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~  351 (454)
                      .++..++.-...++.. .--......+..++.++++.++...+..+.|+.. ...+....+.....++.+...-.-....
T Consensus       649 ~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~-~~~ei~~~~~~~~~~~~l~~~~~~~~a~  727 (748)
T KOG4151|consen  649 GALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE-ALFEIAEKIFETEVMELLSGLQKLNRAP  727 (748)
T ss_pred             ccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH-HHHHHHHHhccchHHHHHHHHHHhhhhh
Confidence            7777565533333332 2234677888999999999999999999999544 3445555555555555554443333333


Q ss_pred             HHHHHHHHHHH
Q 012897          352 IVTVCLEGLEN  362 (454)
Q Consensus       352 v~~~al~~L~~  362 (454)
                      .+..+-.+|..
T Consensus       728 ~~~~~~~~l~~  738 (748)
T KOG4151|consen  728 KREDAAPCLSA  738 (748)
T ss_pred             hhhhhhhHHHH
Confidence            33333333333

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.12  E-value=0.018  Score=52.15  Aligned_cols=185  Identities=21%  Similarity=0.237  Sum_probs=117.5

Q ss_pred             cccCCCHHHHHHHHHHHHHHhccCCCCcHHHHH--HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCC--CchhhHHHH
Q 012897            4 GVWSDDSSLQLEATTQFRKLLSIERSPPIEEVI--QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG--TSENTKVVI   79 (454)
Q Consensus         4 ~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~   79 (454)
                      .+.......|..|+..+.+++...  ...+.+.  ...++..+.+.++.+. .+-+..|+.++.-++-.  .......++
T Consensus        51 ~l~eK~~~~Re~aL~~l~~~l~~~--~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g~~~~ei~  127 (309)
T PF05004_consen   51 LLTEKSSSTREAALEALIRALSSR--YLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAGEDSEEIF  127 (309)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCCccHHHHH
Confidence            445566889999999999998774  2233322  2346778888898888 56677777777777653  223344444


Q ss_pred             hCCChHHHHHhhCCC--CHHHHHHHHHHHHHhh---CCChhhHHHHHhcCChHHHH--HHhch---------hhhhhHHH
Q 012897           80 DHGAVPIFVKLLASP--SDDVREQAVWALGNVA---GDSPRCRDLVLSQGALIPLL--AQLNE---------RAKLSMLR  143 (454)
Q Consensus        80 ~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~---~~~~~~~~~~~~~~~i~~l~--~~l~~---------~~~~~~~~  143 (454)
                      + ...|.|...+.+.  .+.+|..++.+|+-++   ...+......++  .+..+.  .....         .+++.+..
T Consensus       128 ~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~~  204 (309)
T PF05004_consen  128 E-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALVA  204 (309)
T ss_pred             H-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence            4 4678888888763  4667777777777655   222222221111  122111  11211         12356788


Q ss_pred             HHHHHHHhhcCCCCCCCh-hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 012897          144 NATWTLSNFCRGKPQPPF-DQVRPALPALAQLVHSNDEEVLTDACWALSYLS  194 (454)
Q Consensus       144 ~a~~~L~~l~~~~~~~~~-~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~  194 (454)
                      .|+.+.+-|...-+.... ......+|.+..+|.+++.+||..|..+|.-+.
T Consensus       205 aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  205 AALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            888777777755443222 334678999999999999999999999987664

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.11  E-value=0.02  Score=56.38  Aligned_cols=242  Identities=13%  Similarity=0.057  Sum_probs=156.5

Q ss_pred             CchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH-HhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHH
Q 012897           71 TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALG-NVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTL  149 (454)
Q Consensus        71 ~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~-~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L  149 (454)
                      ...-+...++.|+...|+.+...+.+..+.....+|. .+......      ....++.+...+..+....-...++.++
T Consensus       493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~en~E~L~al  566 (748)
T KOG4151|consen  493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGLENFEALEAL  566 (748)
T ss_pred             hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence            5566667788899999999998888888888777777 33221111      1123555555554444333445678889


Q ss_pred             HhhcCCCCCCChhh-hhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhcCCCCCcchhh
Q 012897          150 SNFCRGKPQPPFDQ-VRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLGHPSPSVLIP  227 (454)
Q Consensus       150 ~~l~~~~~~~~~~~-~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~~~~~v~~~  227 (454)
                      .||+..+....... ....++.+-.++..+++..+..++..+.|+.....-....+.+. ...+.....+.........+
T Consensus       567 tnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA  646 (748)
T KOG4151|consen  567 TNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELA  646 (748)
T ss_pred             hcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhh
Confidence            99887764333333 34455666777888899999999999999997765555555552 33444444444455556666


Q ss_pred             HHHHHhHhhccCccchh-hhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcc
Q 012897          228 ALRTVGNIVTGDDFQTQ-CIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAE  306 (454)
Q Consensus       228 a~~~L~~l~~~~~~~~~-~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~  306 (454)
                      ++.++..++......+. ..--..+...+..++.+. +..++......+.|+.....+....+.....++.+..+-....
T Consensus       647 ~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~  725 (748)
T KOG4151|consen  647 GAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNR  725 (748)
T ss_pred             ccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence            66666655544443333 222346777888888888 9999999999999976665666666666666776666555444


Q ss_pred             hhhHHHHHHHHHH
Q 012897          307 FDIKKEAAWAISN  319 (454)
Q Consensus       307 ~~v~~~a~~aL~~  319 (454)
                      ...++.+..+|..
T Consensus       726 a~~~~~~~~~l~~  738 (748)
T KOG4151|consen  726 APKREDAAPCLSA  738 (748)
T ss_pred             hhhhhhhhhHHHH
Confidence            4455555555443

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.09  E-value=0.029  Score=53.06  Aligned_cols=134  Identities=18%  Similarity=0.222  Sum_probs=94.1

Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh-cCCCCCcchhhHHHHHhHhhccCccchhhhhc
Q 012897          170 ALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT  248 (454)
Q Consensus       170 ~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  248 (454)
                      .+-+++.+.++-+|.....+++---....       +.+++..+++. .++.+.++|.+|.-+|+-+|....        
T Consensus       520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------  584 (926)
T COG5116         520 YINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------  584 (926)
T ss_pred             HHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc--------
Confidence            56677777788777777666543211111       12567778887 678899999999999999886443        


Q ss_pred             cCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCH
Q 012897          249 YGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTH  326 (454)
Q Consensus       249 ~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~  326 (454)
                       ..+...+++|....++.||...+.+|+-.|.++....       .+..|-.++.+.+.-||+.|+.+++-+....++
T Consensus       585 -~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~  654 (926)
T COG5116         585 -DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNP  654 (926)
T ss_pred             -chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCc
Confidence             3455667777655588999999999998888654432       244455666677788888888888887765544

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.09  E-value=0.088  Score=51.56  Aligned_cols=133  Identities=20%  Similarity=0.213  Sum_probs=91.7

Q ss_pred             HHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHH
Q 012897          210 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAV  289 (454)
Q Consensus       210 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  289 (454)
                      =+.+-.++.+.++-+|...+.+++.--.+..       +++.+..|+..--++.+.+||+.|+.+|+-++...++.    
T Consensus       521 d~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~----  589 (929)
T KOG2062|consen  521 DPLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ----  589 (929)
T ss_pred             HHHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh----
Confidence            3445566777888888887766643322221       22556677777444449999999999999998876663    


Q ss_pred             HhCCChHHHHHHhhhc-chhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 012897          290 IDAGLVGPLVNLLQNA-EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV  366 (454)
Q Consensus       290 ~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~  366 (454)
                           .+..+.+|... ++.||.-++.+|+-.+.+.....        ++..|-.+.+++..-||+.|+-++.-++..
T Consensus       590 -----~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q  654 (929)
T KOG2062|consen  590 -----LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALIALAMIMIQ  654 (929)
T ss_pred             -----chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHHHHHHHHHh
Confidence                 44566666654 99999999999998877643322        344455566666677999988888777653

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.09  E-value=0.01  Score=58.69  Aligned_cols=224  Identities=12%  Similarity=0.075  Sum_probs=142.2

Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 012897           42 PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVL  121 (454)
Q Consensus        42 ~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  121 (454)
                      +.-+..+.++. +.++-.+++.|..+... .+....+...+++...+..|++.++-+--+|+..+..+|..-|       
T Consensus       730 qeai~sl~d~q-vpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~-------  800 (982)
T KOG4653|consen  730 QEAISSLHDDQ-VPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP-------  800 (982)
T ss_pred             HHHHHHhcCCc-ccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-------
Confidence            33445556666 78899999999999983 3566666778999999999999999999999998888885433       


Q ss_pred             hcCChHHHHHHhchhh---hhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 012897          122 SQGALIPLLAQLNERA---KLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN  198 (454)
Q Consensus       122 ~~~~i~~l~~~l~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~  198 (454)
                       ..+++.+.+......   .++.+-..-.++.++..........+....+...++..++++...|..++..++++|....
T Consensus       801 -e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a  879 (982)
T KOG4653|consen  801 -EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLA  879 (982)
T ss_pred             -hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence             234666666432211   1234444446666666554333344445667777788888888889999999999986544


Q ss_pred             HHHHHHHHhCcHHHHHHhcC-CCCCcchhhHHHHHhHhhccCccchhhhhc---cCChHHHHHhhcCCcchhHHHHHHHH
Q 012897          199 DKIQAVIEAGVCPRLVELLG-HPSPSVLIPALRTVGNIVTGDDFQTQCIIT---YGALPYLLGLLTHSHKKSIKKEACWT  274 (454)
Q Consensus       199 ~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~---~~~l~~L~~~L~~~~~~~v~~~a~~~  274 (454)
                      ......+. .++..++.+.+ ++.+.+|++|+..+..+..+.....-.+..   ......+........+..++..|+.+
T Consensus       880 ~~vsd~~~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~  958 (982)
T KOG4653|consen  880 FQVSDFFH-EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLC  958 (982)
T ss_pred             hhhhHHHH-HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence            33232222 34455555553 467789999999999988765532222221   12222333333333245555555555


Q ss_pred             HH
Q 012897          275 IS  276 (454)
Q Consensus       275 L~  276 (454)
                      +-
T Consensus       959 le  960 (982)
T KOG4653|consen  959 LE  960 (982)
T ss_pred             HH
Confidence            44

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.01  E-value=0.017  Score=57.19  Aligned_cols=189  Identities=13%  Similarity=0.146  Sum_probs=129.0

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhh
Q 012897           85 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQV  164 (454)
Q Consensus        85 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  164 (454)
                      +.-+..+.++.+.++..++..+..+.... .....+...+++...+..+ .+.|+-+.-+|...+..||.-.       .
T Consensus       730 qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~L-kdedsyvyLnaI~gv~~Lcevy-------~  800 (982)
T KOG4653|consen  730 QEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTL-KDEDSYVYLNAIRGVVSLCEVY-------P  800 (982)
T ss_pred             HHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHh-cccCceeeHHHHHHHHHHHHhc-------c
Confidence            33444555677888999999999998654 3345566677888888888 7788888888998888888652       2


Q ss_pred             hchHHHHHHhh-cCC---ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897          165 RPALPALAQLV-HSN---DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD  240 (454)
Q Consensus       165 ~~~l~~l~~ll-~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  240 (454)
                      ..++|.+...- ...   .++.+..+..++.+++..-.+....... -++..++..+++++...|..++..++++|....
T Consensus       801 e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a  879 (982)
T KOG4653|consen  801 EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLA  879 (982)
T ss_pred             hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence            45677776633 222   2344555557777776544433333333 567778888888888889999999999997544


Q ss_pred             cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHH
Q 012897          241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD  284 (454)
Q Consensus       241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~  284 (454)
                      ......+ ..+...++.+...+.+..+|+.|+..+..+..+...
T Consensus       880 ~~vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~  922 (982)
T KOG4653|consen  880 FQVSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGE  922 (982)
T ss_pred             hhhhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccch
Confidence            2222211 134556666666665888999999999999876443

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.99  E-value=0.033  Score=50.48  Aligned_cols=191  Identities=17%  Similarity=0.166  Sum_probs=114.9

Q ss_pred             HHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChh--hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC--ChHHHHHH
Q 012897          129 LLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD--QVRPALPALAQLVHSNDEEVLTDACWALSYLSDG--TNDKIQAV  204 (454)
Q Consensus       129 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~  204 (454)
                      .+..+ .+.....|..++..+..+..........  ....++..+.+.++.+..+-+..|+.++.-++-.  .......+
T Consensus        48 ~Id~l-~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei  126 (309)
T PF05004_consen   48 AIDLL-TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI  126 (309)
T ss_pred             HHHHH-HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence            33344 4455778888888888887665332222  2245677888888888776667777777766644  22233445


Q ss_pred             HHhCcHHHHHHhcCCCC--CcchhhHHHHHhHhhccCccchhhhhc-cCChHH--HHHhhcCC---------cchhHHHH
Q 012897          205 IEAGVCPRLVELLGHPS--PSVLIPALRTVGNIVTGDDFQTQCIIT-YGALPY--LLGLLTHS---------HKKSIKKE  270 (454)
Q Consensus       205 ~~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~--L~~~L~~~---------~~~~v~~~  270 (454)
                      ++ .+.+.|.+.+.+..  ..+|..++.+|+.++.........+.. ...+..  .....+..         .++.+...
T Consensus       127 ~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a  205 (309)
T PF05004_consen  127 FE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAA  205 (309)
T ss_pred             HH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence            55 67888888887754  345667777777776532211111110 012231  11222211         13457777


Q ss_pred             HHHHHHHHhcC-CHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897          271 ACWTISNITAG-NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS  322 (454)
Q Consensus       271 a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  322 (454)
                      |+.+-+-+... ........+ ...++.|..+|.+.+.+||..|..+|.-+..
T Consensus       206 AL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E  257 (309)
T PF05004_consen  206 ALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYE  257 (309)
T ss_pred             HHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            76555555543 232333333 3468999999999999999999999987755

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=96.98  E-value=0.39  Score=46.54  Aligned_cols=253  Identities=13%  Similarity=0.073  Sum_probs=142.8

Q ss_pred             CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHH
Q 012897            9 DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV   88 (454)
Q Consensus         9 d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~   88 (454)
                      .++.|..+...+..++.... .... ..+    ..+.+.+..+..++.-..-+.+|..|+.+..+.  ..++.++.+.|.
T Consensus        42 p~e~R~~~~~ll~~~i~~~~-~~~~-~~R----~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~  113 (464)
T PF11864_consen   42 PSEARRAALELLIACIKRQD-SSSG-LMR----AEFFRDISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLL  113 (464)
T ss_pred             CHHHHHHHHHHHHHHHHccc-cccH-HHH----HHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHH
Confidence            35678888888888776642 1111 111    123333344332444455566677777644343  224567777777


Q ss_pred             HhhCC---------------------------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhH
Q 012897           89 KLLAS---------------------------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSM  141 (454)
Q Consensus        89 ~lL~~---------------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~  141 (454)
                      ..+..                           .+.......+..+.++...+...-..-.-.+.+..++.+.....++..
T Consensus       114 ~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~d  193 (464)
T PF11864_consen  114 SWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDD  193 (464)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHH
Confidence            76631                           122333445566666665443322222222345566666555556666


Q ss_pred             HHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC-
Q 012897          142 LRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP-  220 (454)
Q Consensus       142 ~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-  220 (454)
                      ...++.++-.+..+. .........++..|.......  +....+-.++.|++......       ..+..|..+|.++ 
T Consensus       194 i~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~  263 (464)
T PF11864_consen  194 IEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPD  263 (464)
T ss_pred             HHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccC
Confidence            677777777776654 223334455566666554333  56666777888888654322       3456677777322 


Q ss_pred             -----CCcchhhHHHHHhHhhccCccchhhhh-ccC--ChHHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897          221 -----SPSVLIPALRTVGNIVTGDDFQTQCII-TYG--ALPYLLGLLTHSHKKSIKKEACWTISNITA  280 (454)
Q Consensus       221 -----~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~--~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~  280 (454)
                           +..+..-|+..+..+..+.......-+ -.-  +++.+...++.. ++.+-.+....+.++..
T Consensus       264 ~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll~  330 (464)
T PF11864_consen  264 PQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLLD  330 (464)
T ss_pred             ccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHHh
Confidence                 234556788888888876632222122 222  778888888877 77777777777777773

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.95  E-value=0.72  Score=49.35  Aligned_cols=382  Identities=13%  Similarity=0.070  Sum_probs=188.7

Q ss_pred             ccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCh
Q 012897            5 VWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAV   84 (454)
Q Consensus         5 L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i   84 (454)
                      +.+....||..|+..+....-.. ++...+.     -..+..-+.+.. ..||..++.+++.+|...|.....      +
T Consensus       864 ~~DssasVREAaldLvGrfvl~~-~e~~~qy-----Y~~i~erIlDtg-vsVRKRvIKIlrdic~e~pdf~~i------~  930 (1692)
T KOG1020|consen  864 LNDSSASVREAALDLVGRFVLSI-PELIFQY-----YDQIIERILDTG-VSVRKRVIKILRDICEETPDFSKI------V  930 (1692)
T ss_pred             hccchhHHHHHHHHHHhhhhhcc-HHHHHHH-----HHHHHhhcCCCc-hhHHHHHHHHHHHHHHhCCChhhH------H
Confidence            45566788888888888765543 3444443     334666667777 799999999999999977765432      3


Q ss_pred             HHHHHhhCC---CCHHHHHHHHHHHHHhhCCChhhH-HHHHhcCChHHHHHHhc------hhhhhhHHHHHHHHHHhhcC
Q 012897           85 PIFVKLLAS---PSDDVREQAVWALGNVAGDSPRCR-DLVLSQGALIPLLAQLN------ERAKLSMLRNATWTLSNFCR  154 (454)
Q Consensus        85 ~~L~~lL~~---~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~l~~~l~------~~~~~~~~~~a~~~L~~l~~  154 (454)
                      ....+++..   +...++..+..++.++--..+..+ .......-+...+....      .+..+.+....+..=.....
T Consensus       931 ~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~ 1010 (1692)
T KOG1020|consen  931 DMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTM 1010 (1692)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhh
Confidence            445555543   444588888888888764332211 00000001111111111      11122222222111111000


Q ss_pred             CC--CCCChhhhhchHHHHHHhhc-------------CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC
Q 012897          155 GK--PQPPFDQVRPALPALAQLVH-------------SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH  219 (454)
Q Consensus       155 ~~--~~~~~~~~~~~l~~l~~ll~-------------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~  219 (454)
                      ..  ...........+..+.+++.             ..+.......+.+|.-++...+.    ++....+-.|.+.|..
T Consensus      1011 ~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~----Llt~khv~tL~PYL~s 1086 (1692)
T KOG1020|consen 1011 KESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQ----LLTKKHVITLQPYLTS 1086 (1692)
T ss_pred             hhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCch----hccHHHHHHhhhHHhc
Confidence            00  01111111223333333332             11222334455566666655443    2222444555566654


Q ss_pred             C-----CCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcC---CHHHHHHHHh
Q 012897          220 P-----SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG---NRDQIQAVID  291 (454)
Q Consensus       220 ~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~  291 (454)
                      .     ...+....+.++-...-.-..-.+.++. .+-..|+..+-.. ...+..+|+.|++.++..   +....+.+..
T Consensus      1087 ~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~-sLEe~L~~~i~k~-g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~ 1164 (1692)
T KOG1020|consen 1087 KASTIEEAQFLYYVIQILECVLPLVANPSESFLA-SLEEDLLKRIVKM-GMATVVEAVSCLGSLATKRTDGAKVVKACFS 1164 (1692)
T ss_pred             cccchHHHHHHHHHHHHHHHHhhhhccchHHHHH-HHHHHHHHHHHhc-chHHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence            3     2233344444443333211111122221 2334455555444 555667777778777752   2232333221


Q ss_pred             CCChHHHHHHhhhc--------chhhHHHHHHHHHHhcCCCC----------HHHHHHHHHcCCcHHHhhccCCCCHHHH
Q 012897          292 AGLVGPLVNLLQNA--------EFDIKKEAAWAISNATSGGT----------HEQIKYLVREGCIKPLCDLFVCPDPRIV  353 (454)
Q Consensus       292 ~~~i~~L~~ll~~~--------~~~v~~~a~~aL~~l~~~~~----------~~~~~~l~~~~~i~~L~~~l~~~~~~v~  353 (454)
                        ..-..++.+++.        ....-...+.+++-++++.+          ......-...+++..|.-..+..+-.++
T Consensus      1165 --~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR 1242 (1692)
T KOG1020|consen 1165 --CYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELR 1242 (1692)
T ss_pred             --HHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHH
Confidence              112222222222        22344566777777777431          1111223445667777777778888999


Q ss_pred             HHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHH--HHHHHHHHHHhcCcCC
Q 012897          354 TVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI--YEKAVKILETYWLEED  423 (454)
Q Consensus       354 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v--~~~a~~~l~~~~~~~~  423 (454)
                      ..|+.+|+.++-..+                ..|.+......+..+..+.+.+.  +-.+.+.++.|+.+++
T Consensus      1243 ~~al~~Lg~~ci~hp----------------~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~eee 1298 (1692)
T KOG1020|consen 1243 RKALINLGFICIQHP----------------SLFTSREVLNLYDEILADDNSDIKSKIQLLQNLELYLLEEE 1298 (1692)
T ss_pred             HHHHHHHHHHHhhCc----------------hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence            999999999986432                23444445566666665555444  3455666666666554

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.90  E-value=0.039  Score=51.05  Aligned_cols=147  Identities=13%  Similarity=0.166  Sum_probs=102.3

Q ss_pred             ChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHH-HHHhccCChHHHHH
Q 012897          125 ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWA-LSYLSDGTNDKIQA  203 (454)
Q Consensus       125 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~-L~~l~~~~~~~~~~  203 (454)
                      ++..+++.+.+..++..+..|+..|..++...+..-.....-.+..++..-.+.++++...|..+ +..++.+.+...  
T Consensus       330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~--  407 (516)
T KOG2956|consen  330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC--  407 (516)
T ss_pred             HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH--
Confidence            35667788866688899999999999999987655555555566666666667777766665554 444555554331  


Q ss_pred             HHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897          204 VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  280 (454)
Q Consensus       204 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~  280 (454)
                            +..+..++...++.....+++.+..++..-...--..+-..+.|.+++...+. +..||+.|+++|..+..
T Consensus       408 ------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  408 ------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             ------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence                  33344555556777777788888888865432222223347889999999999 99999999999987764

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.87  E-value=0.058  Score=49.96  Aligned_cols=173  Identities=14%  Similarity=0.173  Sum_probs=109.4

Q ss_pred             hhHHHHHHHHHHHhcC-CCchhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHH
Q 012897           54 PQLQFEAAWALTNIAS-GTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLA  131 (454)
Q Consensus        54 ~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~  131 (454)
                      .+-+..|+.-|..+.. ++.......+. .++..+++.|.+ .++..+..|+++|..++...+..-.. ...-.+..+++
T Consensus       301 a~~~k~alsel~~m~~e~sfsvWeq~f~-~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D-stE~ai~K~Le  378 (516)
T KOG2956|consen  301 ASERKEALSELPKMLCEGSFSVWEQHFA-EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD-STEIAICKVLE  378 (516)
T ss_pred             hhHHHHHHHHHHHHHHccchhHHHHHHH-HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc-hHHHHHHHHHH
Confidence            4556677765555544 33333333322 356778888887 78899999999999999877631111 01113445555


Q ss_pred             HhchhhhhhHHHHHH-HHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh-HHHHHHHHhCc
Q 012897          132 QLNERAKLSMLRNAT-WTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN-DKIQAVIEAGV  209 (454)
Q Consensus       132 ~l~~~~~~~~~~~a~-~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~  209 (454)
                      .- .+.+.++...|. .++..++.+.|.       ..+..+..++.+.|......++..+..++..-+ +....++ .++
T Consensus       379 aa-~ds~~~v~~~Aeed~~~~las~~P~-------~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll-~di  449 (516)
T KOG2956|consen  379 AA-KDSQDEVMRVAEEDCLTTLASHLPL-------QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLL-PDI  449 (516)
T ss_pred             HH-hCCchhHHHHHHHHHHHHHHhhCch-------hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhh-hhh
Confidence            55 334444444444 455566655443       234455666666788887888888888875533 2222233 378


Q ss_pred             HHHHHHhcCCCCCcchhhHHHHHhHhhc
Q 012897          210 CPRLVELLGHPSPSVLIPALRTVGNIVT  237 (454)
Q Consensus       210 i~~L~~ll~~~~~~v~~~a~~~L~~l~~  237 (454)
                      .|.+++--.+.+..+|+.|++||..+..
T Consensus       450 aP~~iqay~S~SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  450 APCVIQAYDSTSSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             hhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence            8888888899999999999999988764

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.78  E-value=0.015  Score=59.66  Aligned_cols=161  Identities=23%  Similarity=0.243  Sum_probs=122.9

Q ss_pred             CCHHHHHHhhcCC---CChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCh
Q 012897           39 GVVPRFVEFLMRE---DYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSP  114 (454)
Q Consensus        39 ~~l~~L~~lL~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~  114 (454)
                      ...|.+++..+++   ++|+++..|.-+|+.+..-+.+....     -+|.|+..+. ++++.+|.+++-+++-++-.-|
T Consensus       919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fp  993 (1251)
T KOG0414|consen  919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP  993 (1251)
T ss_pred             HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence            3577777777543   23999999999999998866555443     3789999998 6999999999999999875444


Q ss_pred             hhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 012897          115 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS  194 (454)
Q Consensus       115 ~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~  194 (454)
                      ..-+.     ..+.+...+ .+.++.+++.|..+|.+|...    .+....|.++.+..++.++++.++.-|=..+..++
T Consensus       994 nlie~-----~T~~Ly~rL-~D~~~~vRkta~lvlshLILn----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen  994 NLIEP-----WTEHLYRRL-RDESPSVRKTALLVLSHLILN----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred             cccch-----hhHHHHHHh-cCccHHHHHHHHHHHHHHHHh----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence            32222     356677777 788999999999999999865    46667899999999999999999888877777777


Q ss_pred             cCChHHHHHHHHhCcHHHHHHhcCCC
Q 012897          195 DGTNDKIQAVIEAGVCPRLVELLGHP  220 (454)
Q Consensus       195 ~~~~~~~~~~~~~~~i~~L~~ll~~~  220 (454)
                      ......    +  +++|.++..|.++
T Consensus      1064 ~k~n~i----y--nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1064 SKGNTI----Y--NLLPDILSRLSNG 1083 (1251)
T ss_pred             hcccch----h--hhchHHHHhhccC
Confidence            554321    1  4677777777665

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.76  E-value=0.056  Score=46.51  Aligned_cols=141  Identities=11%  Similarity=0.142  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC----ChhHHHHHHHHHHHhcC-CCchhhHHHHhCCChHHHH
Q 012897           14 LEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED----YPQLQFEAAWALTNIAS-GTSENTKVVIDHGAVPIFV   88 (454)
Q Consensus        14 ~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~   88 (454)
                      ..|+..|..++++  ++....+++..+.-.|..+|+..+    .+.+|..++.+++.+.+ ++++....+.+..++|..+
T Consensus        68 cnaLaLlQ~vAsh--petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcL  145 (262)
T PF04078_consen   68 CNALALLQCVASH--PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCL  145 (262)
T ss_dssp             HHHHHHHHHHHH---TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHHHcC--hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHH
Confidence            3556566666776  788899999988777777776543    25789999999999998 5678888899999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhhCCChhhHH------HHH-hcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC
Q 012897           89 KLLASPSDDVREQAVWALGNVAGDSPRCRD------LVL-SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  156 (454)
Q Consensus        89 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~------~~~-~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  156 (454)
                      ..++.+++..+..|..++..+..++.....      .+. -..++..++..+...+++.+.+..+.+-..|+.++
T Consensus       146 r~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp  220 (262)
T PF04078_consen  146 RIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP  220 (262)
T ss_dssp             HHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred             HHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence            999999999999999999888755432211      111 12245556666667788999999999999999874

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=96.75  E-value=0.025  Score=55.02  Aligned_cols=192  Identities=13%  Similarity=0.147  Sum_probs=138.0

Q ss_pred             hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccc
Q 012897          163 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ  242 (454)
Q Consensus       163 ~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  242 (454)
                      +...++|.+++++...|..+|...+.-+-.....-.   ...++..+++.+..-+.+.++.+|+..+.++..++..-.  
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt---~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~--  401 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLT---KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS--  401 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcC---HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc--
Confidence            556799999999999999999988887777665533   446777899999999999999999999999999885322  


Q ss_pred             hhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcC-CHHHHHHHHhCCC-hHHHHHHhhhcchhhHHHHHHHHHHh
Q 012897          243 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGL-VGPLVNLLQNAEFDIKKEAAWAISNA  320 (454)
Q Consensus       243 ~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~-i~~L~~ll~~~~~~v~~~a~~aL~~l  320 (454)
                       ...+....++.+...=.+. +..+|....-+++.++.. .+..     ..++ ...+.+.+.+.-..-|..+.+++...
T Consensus       402 -~~~Ln~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~~~~-----R~~vL~~aftralkdpf~paR~a~v~~l~at  474 (690)
T KOG1243|consen  402 -KRNLNGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLAASV-----RKRVLASAFTRALKDPFVPARKAGVLALAAT  474 (690)
T ss_pred             -hhhhcHHHHHHHHhhCccc-cCcccccceeeecccccccchhh-----hccccchhhhhhhcCCCCCchhhhhHHHhhc
Confidence             2234444555555554544 788999998889888764 2222     2232 34455556666777888888888766


Q ss_pred             cCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhh
Q 012897          321 TSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAE  370 (454)
Q Consensus       321 ~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~  370 (454)
                      ...-+...    +...+++.+.-+.-+++..++..+..++..++...++.
T Consensus       475 ~~~~~~~~----va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~  520 (690)
T KOG1243|consen  475 QEYFDQSE----VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV  520 (690)
T ss_pred             ccccchhh----hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence            55432221    23457888888888888889988888888887665544

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.71  E-value=0.31  Score=41.33  Aligned_cols=187  Identities=16%  Similarity=0.084  Sum_probs=121.4

Q ss_pred             CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHh-------hcCC----CChhHHHHHHHHHHHhcCCCchhhHH
Q 012897            9 DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEF-------LMRE----DYPQLQFEAAWALTNIASGTSENTKV   77 (454)
Q Consensus         9 d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~l-------L~~~----~~~~v~~~a~~~L~~l~~~~~~~~~~   77 (454)
                      ++..+..|+..|.+-....+.-....+..-|....+.+-       |..+    ..+.=...|+..|-.+++ .++.+..
T Consensus        37 ~~p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcvAS-HpdTr~~  115 (293)
T KOG3036|consen   37 SPPTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCVAS-HPDTRRA  115 (293)
T ss_pred             CCchHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHHHhc-CcchHHH
Confidence            355666666666665443212222222233444444332       1111    102223455555555666 8999999


Q ss_pred             HHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhC-CChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHh
Q 012897           78 VIDHGAVPIFVKLLAS-----PSDDVREQAVWALGNVAG-DSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN  151 (454)
Q Consensus        78 ~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  151 (454)
                      +.+..+--.+-.+|..     +.+-+|-.++.+++.+.. ++.+.-..+...++++..++.+ ...++..+..|..++..
T Consensus       116 FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrim-e~GSelSKtvA~fIlqK  194 (293)
T KOG3036|consen  116 FLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIM-ESGSELSKTVATFILQK  194 (293)
T ss_pred             HHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHH-hcccHHHHHHHHHHHHH
Confidence            9998877777777754     457889999999999984 4455667788889999999999 66677788888888888


Q ss_pred             hcCCCCCCC--------hhhhhchHH-HHHHhhcCCChhHHHHHHHHHHHhccCC
Q 012897          152 FCRGKPQPP--------FDQVRPALP-ALAQLVHSNDEEVLTDACWALSYLSDGT  197 (454)
Q Consensus       152 l~~~~~~~~--------~~~~~~~l~-~l~~ll~~~~~~v~~~a~~~L~~l~~~~  197 (454)
                      +..++....        +......+. .+.++.+.+++.+..++++|..+++.+.
T Consensus       195 IlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp  249 (293)
T KOG3036|consen  195 ILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP  249 (293)
T ss_pred             HhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence            877753221        112233333 3345566788999999999999998764

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.67  E-value=0.099  Score=47.42  Aligned_cols=170  Identities=17%  Similarity=0.053  Sum_probs=109.6

Q ss_pred             CChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897           82 GAVPIFV-KLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP  160 (454)
Q Consensus        82 g~i~~L~-~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (454)
                      ++++.|+ ..+++.++.+|+.++.+|+-.|--+......     .++.+...+ +..++.++..|+.++..+........
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~-~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQAL-QKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            3444444 6778899999999999999998655433222     256677777 55588999999999998875532111


Q ss_pred             h---------hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC----CCCcchhh
Q 012897          161 F---------DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH----PSPSVLIP  227 (454)
Q Consensus       161 ~---------~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~----~~~~v~~~  227 (454)
                      .         .....++..+.+.+.+.+++++..++..++.+.-...-..    ...++..|+-+--+    ++..+|..
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~  175 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQC  175 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence            1         1235678889999999999999999999998764432111    12333333333222    33455555


Q ss_pred             HHHHHhHhhccCccchhhhhccCChHHHHHhhcCC
Q 012897          228 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS  262 (454)
Q Consensus       228 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~  262 (454)
                      -...+-..+...... +..+...+++.+..+...+
T Consensus       176 L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  176 LSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence            556666666655534 3455557777777776554

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.64  E-value=0.0034  Score=46.96  Aligned_cols=71  Identities=15%  Similarity=0.274  Sum_probs=60.7

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 012897           40 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA  110 (454)
Q Consensus        40 ~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~  110 (454)
                      ++..|+++|..++++.+...|+.=|+.++...|..+..+-+.|+=..++.++.+++++++..|+.++..+.
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            57889999965544888899999999999988999998888899999999999999999999999998774

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.62  E-value=0.0039  Score=46.62  Aligned_cols=73  Identities=18%  Similarity=0.249  Sum_probs=60.6

Q ss_pred             CChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897          250 GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS  322 (454)
Q Consensus       250 ~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  322 (454)
                      .++..|+.+|..+.++.+..-||.-|+.++...|..+..+-+.|+-..+++++.+++++|+.+|+.++..+..
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            4678899999665588888899999999999777777666678999999999999999999999999987754

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PRK14707 hypothetical protein; Provisional

Probab=96.61  E-value=1.7  Score=48.48  Aligned_cols=358  Identities=16%  Similarity=0.113  Sum_probs=193.6

Q ss_pred             HHHHHHhhc-CCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhH
Q 012897           41 VPRFVEFLM-REDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCR  117 (454)
Q Consensus        41 l~~L~~lL~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~  117 (454)
                      +..++..++ .+++.+.+..+...-.-++. .+..+..+ +...|-.+++.++.  .++..+..+...-..++.+ ...+
T Consensus       165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~-~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~  241 (2710)
T PRK14707        165 ISLALNAFSKWSDNPDCQAVAPRFAALVAS-DDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLR  241 (2710)
T ss_pred             HHHHHHHhhcCCCCchHHHHHHHHHHHhcC-Chhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHH
Confidence            334444443 34446666666666666665 33444333 45567777777776  4455555555444555544 4444


Q ss_pred             HHHHhcCChHHHHHHhchhhhhhHHHHHHHHH-HhhcCCCCCCChhhh-hchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 012897          118 DLVLSQGALIPLLAQLNERAKLSMLRNATWTL-SNFCRGKPQPPFDQV-RPALPALAQLVHSNDEEVLTDACWALSYLSD  195 (454)
Q Consensus       118 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L-~~l~~~~~~~~~~~~-~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~  195 (454)
                      ..+-..+ +...++.|.+-++..+-..+..++ ..+..+.. ....+. .++-..+-.+-+-++..+-..+...|..=..
T Consensus       242 ~~~~~q~-va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~-l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~  319 (2710)
T PRK14707        242 NELKPQE-LGNALNALSKWADTPVCAAAASALAERLVDDPG-LRKALDPINVTQALNALSKWADLPVCAEAAIALAERLA  319 (2710)
T ss_pred             HhCChHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHH-HHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHh
Confidence            4443333 444555554545554444444444 44544422 222222 2333333344444566665555555544332


Q ss_pred             CChHHHHHHHHhCcHHHHHHhc-CCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHH
Q 012897          196 GTNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWT  274 (454)
Q Consensus       196 ~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~  274 (454)
                      ..+...+ -++...+...+.-| +-++..+...|...|..-....+...+ -++..++..+++-++.-++..+...|+..
T Consensus       320 ~d~~l~~-~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~-~l~~q~~a~~lNalsKWp~~~~c~~aa~~  397 (2710)
T PRK14707        320 DDPELCK-ALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRK-DLEPQGVSSVLNALSKWPDTPVCAAAASA  397 (2710)
T ss_pred             ccHhhhh-ccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhc-ccchhHHHHHHhhhhcCCCchHHHHHHHH
Confidence            3333322 23333344444444 336666666665555554443443433 33445666666666554366777777777


Q ss_pred             HHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHH
Q 012897          275 ISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVT  354 (454)
Q Consensus       275 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~  354 (454)
                      |..-..+.++..+.+-..|+-..|-.+-+=++..+...++.+|.--... +.+.++.|--.++...|-.+-+.+|..+..
T Consensus       398 LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~-d~~l~~~~~p~~va~~LnalSKWPd~p~c~  476 (2710)
T PRK14707        398 LAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAH-DTELCKALDPINVTQALDALSKWPDTPICG  476 (2710)
T ss_pred             HHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhc-cHHHHhhcChHHHHHHHHHhhcCCCChhHH
Confidence            7665556666665555444444444443446888888888888766654 556666655566677777777888877665


Q ss_pred             HHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHH-HHHHHHhc
Q 012897          355 VCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA-VKILETYW  419 (454)
Q Consensus       355 ~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a-~~~l~~~~  419 (454)
                      .+...|..=+.....             .+.-|.-.++...|..|...++......| .++..++.
T Consensus       477 ~aa~~La~~l~~~~~-------------l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~  529 (2710)
T PRK14707        477 QTASALAARLAHERR-------------LRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVV  529 (2710)
T ss_pred             HHHHHHHHHhcccHH-------------HHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Confidence            555555544433222             34455556666777888777776655444 44444444

>PRK14707 hypothetical protein; Provisional

Probab=96.58  E-value=1.7  Score=48.35  Aligned_cols=360  Identities=15%  Similarity=0.099  Sum_probs=186.7

Q ss_pred             cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHH-HHhhCCChh
Q 012897           38 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWAL-GNVAGDSPR  115 (454)
Q Consensus        38 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L-~~l~~~~~~  115 (454)
                      .|+...|-.+-+-+++++.+..+...-..++. ....+..+ +...+-..++.|.. ++...-..++..+ ..++ +.+.
T Consensus       205 q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~-~~~l~~~~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~-~~~~  281 (2710)
T PRK14707        205 QGVATVLNALCKWPDTPDCGNAVSALAERLAD-ESRLRNEL-KPQELGNALNALSKWADTPVCAAAASALAERLV-DDPG  281 (2710)
T ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-cHHHHHhC-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHh-hhHH
Confidence            34333443444445545655544444444444 44444333 44446666666665 5554444444444 4454 4444


Q ss_pred             hHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhh-cCCChhHHHHHHHHHHHhc
Q 012897          116 CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV-HSNDEEVLTDACWALSYLS  194 (454)
Q Consensus       116 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~v~~~a~~~L~~l~  194 (454)
                      .++.+-..+ +...++-|.+-++..+-..+...|..=..+++.....+....+..+++-| +=++..+-..+..+|..=.
T Consensus       282 l~~al~~q~-vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl  360 (2710)
T PRK14707        282 LRKALDPIN-VTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERL  360 (2710)
T ss_pred             HHHhcCHHH-HHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHh
Confidence            555443333 34444555455666666655555443333332222222222233333333 3345555555555554433


Q ss_pred             cCChHHHHHHHHhCcHHHHHHhc-CCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHH
Q 012897          195 DGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACW  273 (454)
Q Consensus       195 ~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~  273 (454)
                      ..++...+ -++...+..++.-+ +-++......+...|..-.....+..+ -++...+...++-|+.-++..+...++.
T Consensus       361 ~~d~~l~~-~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~-~~~~Q~van~lnalsKWPd~~~C~~aa~  438 (2710)
T PRK14707        361 VADPELRK-DLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRK-GLDPQGVSNALNALAKWPDLPICGQAVS  438 (2710)
T ss_pred             ccCHhhhc-ccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhh-hcchhhHHHHHHHhhcCCcchhHHHHHH
Confidence            33333323 33334455555555 447777777777777666655554444 4455666666666654437777777777


Q ss_pred             HHHHHhcCCHHHHHHHHhCCChHHHHHHhh-hcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHH-
Q 012897          274 TISNITAGNRDQIQAVIDAGLVGPLVNLLQ-NAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR-  351 (454)
Q Consensus       274 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~-  351 (454)
                      .|.--..+..+..+.+--.++.. .++.++ =++..+...++..|..-... +.+.++.|.-.++...|-.+-+.++.. 
T Consensus       439 ~lA~~la~d~~l~~~~~p~~va~-~LnalSKWPd~p~c~~aa~~La~~l~~-~~~l~~a~~~q~~~~~L~aLSK~Pd~~~  516 (2710)
T PRK14707        439 ALAGRLAHDTELCKALDPINVTQ-ALDALSKWPDTPICGQTASALAARLAH-ERRLRKALKPQEVVIALHSLSKWPDTPI  516 (2710)
T ss_pred             HHHHHHhccHHHHhhcChHHHHH-HHHHhhcCCCChhHHHHHHHHHHHhcc-cHHHHhhcCHHHHHHHHHHhhcCCCcHH
Confidence            77666656566554443333333 333333 35777777777777655544 344555555556667777777777754 


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 012897          352 IVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW  419 (454)
Q Consensus       352 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~  419 (454)
                      ....+.+.-..+....              .....|...+....++.+..+++......+..-|...+
T Consensus       517 c~~A~~~lA~rl~~~~--------------~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l  570 (2710)
T PRK14707        517 CAEAASALAERVVDEL--------------QLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERL  570 (2710)
T ss_pred             HHHHHHHHHHHhccch--------------hhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHh
Confidence            3334444444444211              13444555555666777777776666555555555444

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=96.57  E-value=0.06  Score=52.27  Aligned_cols=180  Identities=16%  Similarity=0.183  Sum_probs=123.7

Q ss_pred             chHHHHHHhhcC----CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-CCCCcchhhHHHHHhHhhccCc
Q 012897          166 PALPALAQLVHS----NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLIPALRTVGNIVTGDD  240 (454)
Q Consensus       166 ~~l~~l~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~  240 (454)
                      .+-|.+.....+    .|+.++..|-.+|..+..-+.....     .-+|.++..+. +++|.+|.+|.-.++.++....
T Consensus       892 ~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN  966 (1128)
T COG5098         892 NFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN  966 (1128)
T ss_pred             hhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehh
Confidence            344555555544    6889999998888877644333322     56788888885 7999999999999988876443


Q ss_pred             cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHh
Q 012897          241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA  320 (454)
Q Consensus       241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  320 (454)
                      ....     ..-..|..-|.+. +..||+.+..++.++.....-     --.|-++.+..++.+++.++...|-..+..+
T Consensus       967 ~~~d-----e~t~yLyrrL~De-~~~V~rtclmti~fLilagq~-----KVKGqlg~ma~~L~deda~Isdmar~fft~~ 1035 (1128)
T COG5098         967 TTAD-----EHTHYLYRRLGDE-DADVRRTCLMTIHFLILAGQL-----KVKGQLGKMALLLTDEDAEISDMARHFFTQI 1035 (1128)
T ss_pred             hhhH-----HHHHHHHHHhcch-hhHHHHHHHHHHHHHHHccce-----eeccchhhhHhhccCCcchHHHHHHHHHHHH
Confidence            2322     3346788888888 999999999999998864321     1267889999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHcCCcHHHhhccCC---CCHHHHHHHHHHHHHHHHhhh
Q 012897          321 TSGGTHEQIKYLVREGCIKPLCDLFVC---PDPRIVTVCLEGLENILKVGE  368 (454)
Q Consensus       321 ~~~~~~~~~~~l~~~~~i~~L~~~l~~---~~~~v~~~al~~L~~l~~~~~  368 (454)
                      +...+.      ..+|++...-.+-.+   ++.. -...++.|..++....
T Consensus      1036 a~KdNt------~yn~fidifs~ls~~ae~g~e~-fk~II~FLt~fI~ker 1079 (1128)
T COG5098        1036 AKKDNT------MYNGFIDIFSTLSSDAENGQEP-FKLIIGFLTDFISKER 1079 (1128)
T ss_pred             Hhcccc------hhhhhHHHHHHcCchhhcCCCc-HHHHHHHHHHHHHHHH
Confidence            885432      223455544444321   2222 2345566666665443

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.54  E-value=0.75  Score=47.08  Aligned_cols=210  Identities=15%  Similarity=0.179  Sum_probs=127.4

Q ss_pred             hCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc---hhhh----hhHHHHHHH
Q 012897           80 DHGAVPIFVKLLAS-----PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN---ERAK----LSMLRNATW  147 (454)
Q Consensus        80 ~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~----~~~~~~a~~  147 (454)
                      +.|++..++..+.+     .........+..|...|. .+.+|+.+.+.++++.|+..+.   ....    ..+.+..+.
T Consensus       115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~  193 (802)
T PF13764_consen  115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE  193 (802)
T ss_pred             cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence            56899999999876     234555666666666654 4678999999999999998885   2222    566666666


Q ss_pred             HHHhhcCCCCCCChh-------------hhhchHHHHHHhhcC----CChhHHHHHHHHHHHhccCChHHHHHHHHhCcH
Q 012897          148 TLSNFCRGKPQPPFD-------------QVRPALPALAQLVHS----NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC  210 (454)
Q Consensus       148 ~L~~l~~~~~~~~~~-------------~~~~~l~~l~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i  210 (454)
                      ++..+..........             ....-+..+++.+.+    .++.+....++.|-+++....+..+.+++.  +
T Consensus       194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F  271 (802)
T PF13764_consen  194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--F  271 (802)
T ss_pred             HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--H
Confidence            666665443211110             022335566666654    468899999999999999988877766652  2


Q ss_pred             HHHHHhcCC--CCCcchhhHHHHHhHhhccCc------cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCC
Q 012897          211 PRLVELLGH--PSPSVLIPALRTVGNIVTGDD------FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN  282 (454)
Q Consensus       211 ~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~------~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~  282 (454)
                      ...+.+=..  ....--...+.+++.++.+-+      ..++.+++.|++...+..|... -|..           ....
T Consensus       272 ~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~-~P~~-----------~~~~  339 (802)
T PF13764_consen  272 KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH-FPSL-----------KNTD  339 (802)
T ss_pred             HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh-Cccc-----------ccCC
Confidence            222222111  111111234666666665432      3455677778888777777655 4433           1112


Q ss_pred             HHHHHHHHhCCChHHHHHHhhh
Q 012897          283 RDQIQAVIDAGLVGPLVNLLQN  304 (454)
Q Consensus       283 ~~~~~~l~~~~~i~~L~~ll~~  304 (454)
                      .......+....+|..+++|..
T Consensus       340 s~eWk~~l~~psLp~iL~lL~G  361 (802)
T PF13764_consen  340 SPEWKEFLSRPSLPYILRLLRG  361 (802)
T ss_pred             CHHHHHHhcCCcHHHHHHHHHH
Confidence            3445566666777777777653

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.52  E-value=0.12  Score=44.76  Aligned_cols=109  Identities=22%  Similarity=0.249  Sum_probs=84.8

Q ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHH
Q 012897          309 IKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLV  387 (454)
Q Consensus       309 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l  387 (454)
                      ....|+.+|.-++.- .+.....+.+...++.|+++++ ...+.++..++.+|..++-....             ....|
T Consensus       107 li~~aL~vLQGl~LL-Hp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~-------------N~r~F  172 (257)
T PF08045_consen  107 LIALALRVLQGLCLL-HPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPE-------------NQRDF  172 (257)
T ss_pred             HHHHHHHHHHHHHHc-CchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChH-------------HHHHH
Confidence            445677777777665 3455667778899999999995 45688999999999999876544             35589


Q ss_pred             HHhccHHHHHHHhcC--CCHHHHHHHHHHHHHhcCcCCCccccCCC
Q 012897          388 EEAEGLEKIENLQSH--DNNEIYEKAVKILETYWLEEDDETIAAGD  431 (454)
Q Consensus       388 ~~~g~~~~l~~l~~~--~~~~v~~~a~~~l~~~~~~~~~~~~~~~~  431 (454)
                      ++.+|+..+..+..+  .+.+++-++...+.-|+.+|..+..++..
T Consensus       173 E~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~~~~~~~~  218 (257)
T PF08045_consen  173 EELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETPSIPPGSS  218 (257)
T ss_pred             HHhCCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCCCCCcccc
Confidence            999999999998644  57889999999999999988877665443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=96.49  E-value=0.24  Score=48.78  Aligned_cols=297  Identities=16%  Similarity=0.111  Sum_probs=162.6

Q ss_pred             HHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCC-------CChhHHHHHHHHHHHhcC--CCchhhHHHHhCCCh
Q 012897           14 LEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-------DYPQLQFEAAWALTNIAS--GTSENTKVVIDHGAV   84 (454)
Q Consensus        14 ~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~-------~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i   84 (454)
                      .+|+..+..+.+..+..     .=.|+++.+.+.|...       +++.-.+.|++.+.++..  ........+++.=++
T Consensus       388 laal~fl~~~~sKrke~-----TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv  462 (970)
T COG5656         388 LAALFFLIISKSKRKEE-----TFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIV  462 (970)
T ss_pred             HHHHHHHHHHhcccchh-----hhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence            34555555555543221     1257899999998432       124445667777777665  333444444555567


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhh
Q 012897           85 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQV  164 (454)
Q Consensus        85 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  164 (454)
                      +.++..++++.--++..++..+..+..+   .++......+.+...+.+ .+.+-.++..|+.++.-+..+. .......
T Consensus       463 ~hv~P~f~s~ygfL~Srace~is~~eeD---fkd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~-q~h~k~s  537 (970)
T COG5656         463 NHVIPAFRSNYGFLKSRACEFISTIEED---FKDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNE-QSHEKFS  537 (970)
T ss_pred             HHhhHhhcCcccchHHHHHHHHHHHHHh---cccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhch-hhhHHHH
Confidence            7788888899899999999999998533   223333333466666777 4577889999999999888775 2222222


Q ss_pred             h---chHHHHHHhhcCCChhHHHHHHHHHH-HhccCChHHHHHHHHhCcHHHHHHh----cCCCC------CcchhhHHH
Q 012897          165 R---PALPALAQLVHSNDEEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVEL----LGHPS------PSVLIPALR  230 (454)
Q Consensus       165 ~---~~l~~l~~ll~~~~~~v~~~a~~~L~-~l~~~~~~~~~~~~~~~~i~~L~~l----l~~~~------~~v~~~a~~  230 (454)
                      .   +.++.++.+-..-+.++...++..+. ..+..-......+.. .++..++++    +..++      ++-+.+|..
T Consensus       538 ahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~-~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasG  616 (970)
T COG5656         538 AHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAG-SLVRQFLKIAQSLLENSSDTSSVVDDKQMAASG  616 (970)
T ss_pred             hhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHH-HHHHHHHHHHHHHHcCCccccccccHHHHHHHH
Confidence            3   33334444444445555544444332 222221122222222 233333333    32221      122344444


Q ss_pred             HHhHhhc---cCccch--hhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc
Q 012897          231 TVGNIVT---GDDFQT--QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA  305 (454)
Q Consensus       231 ~L~~l~~---~~~~~~--~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~  305 (454)
                      .|..+..   .-+...  -.-+.....|.+--++++. -.++-.+|+-.+-++.-.+.+.- . +.-|+.+.+.+++.+.
T Consensus       617 iL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~-i~dfy~Ea~dildg~tf~skeI~-p-imwgi~Ell~~~l~~~  693 (970)
T COG5656         617 ILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNE-ISDFYQEALDILDGYTFMSKEIE-P-IMWGIFELLLNLLIDE  693 (970)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHHhh-h-hhhHHHHHHHhccccc
Confidence            4444332   111111  1112335556666667777 77788888888877765333221 1 1134555555555554


Q ss_pred             ch-hhHHHHHHHHHHhcCCC
Q 012897          306 EF-DIKKEAAWAISNATSGG  324 (454)
Q Consensus       306 ~~-~v~~~a~~aL~~l~~~~  324 (454)
                      .. .-...+.-++.|+...+
T Consensus       694 ~t~~y~ee~~~al~nfityG  713 (970)
T COG5656         694 ITAVYSEEVADALDNFITYG  713 (970)
T ss_pred             chhhhHHHHHHHHHHHHHhC
Confidence            43 55677888888887766

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.45  E-value=0.46  Score=48.26  Aligned_cols=194  Identities=18%  Similarity=0.142  Sum_probs=119.1

Q ss_pred             HHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHH--HHHHhhcCCCh-h
Q 012897          105 ALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP--ALAQLVHSNDE-E  181 (454)
Q Consensus       105 ~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~--~l~~ll~~~~~-~  181 (454)
                      +++++....+.....+.+.++...+...+....+.++...++..+.+++...+..........+.  .+-.++...+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            45577777788888899999999999999766788899999999999997764443333322222  33334444444 6


Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHH-HHHhhc
Q 012897          182 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPY-LLGLLT  260 (454)
Q Consensus       182 v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~-L~~~L~  260 (454)
                      .-..++..|+.+...++....                   ...+..+...+......-............... +..++.
T Consensus       574 rsY~~~siLa~ll~~~~~~~~-------------------~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~  634 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTE-------------------CVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILR  634 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCcc-------------------ccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhc
Confidence            777777777777655432111                   111222222222222111111111222222333 666666


Q ss_pred             CCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc-chhhHHHHHHHH
Q 012897          261 HSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAI  317 (454)
Q Consensus       261 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL  317 (454)
                      .+..+.....|.|++.+++...++..+...+.++++.+.+.-... ...++..+...+
T Consensus       635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  692 (699)
T KOG3665|consen  635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI  692 (699)
T ss_pred             ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence            665788999999999999998888777777888888777654332 444444444444

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.39  E-value=1.1  Score=43.73  Aligned_cols=167  Identities=14%  Similarity=0.104  Sum_probs=99.3

Q ss_pred             CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHH
Q 012897            8 DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF   87 (454)
Q Consensus         8 ~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L   87 (454)
                      .++....-|+..|.+..... +...+.     ++..++++..+.+ ..||..|+..|-.+|.++++....+     ...|
T Consensus        34 g~~k~K~Laaq~I~kffk~F-P~l~~~-----Ai~a~~DLcEDed-~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL  101 (556)
T PF05918_consen   34 GSPKEKRLAAQFIPKFFKHF-PDLQEE-----AINAQLDLCEDED-VQIRKQAIKGLPQLCKDNPEHVSKV-----ADVL  101 (556)
T ss_dssp             S-HHHHHHHHHHHHHHHCC--GGGHHH-----HHHHHHHHHT-SS-HHHHHHHHHHGGGG--T--T-HHHH-----HHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhC-hhhHHH-----HHHHHHHHHhccc-HHHHHHHHHhHHHHHHhHHHHHhHH-----HHHH
Confidence            56788888999999988875 333333     5788999999999 9999999999999999877777665     5789


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc--hhhhhhHHHHHHHHHHhhcCCC--CCC--Ch
Q 012897           88 VKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN--ERAKLSMLRNATWTLSNFCRGK--PQP--PF  161 (454)
Q Consensus        88 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~~~~~a~~~L~~l~~~~--~~~--~~  161 (454)
                      +++|.++++.-...+-.+|..+...++..        .+..+...+.  ...++.+++.++..|..=...-  ...  ..
T Consensus       102 ~QlL~tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~  173 (556)
T PF05918_consen  102 VQLLQTDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQK  173 (556)
T ss_dssp             HHHTT---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---H
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchH
Confidence            99999988777777777777776444421        2444444442  2456778888887664333222  111  13


Q ss_pred             hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 012897          162 DQVRPALPALAQLVHSNDEEVLTDACWALSYLS  194 (454)
Q Consensus       162 ~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~  194 (454)
                      +...-++..+-+.|.+-...=-...+..|..+-
T Consensus       174 E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk  206 (556)
T PF05918_consen  174 EMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLK  206 (556)
T ss_dssp             HHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSG
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCc
Confidence            344455566667775433333333444455444

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=96.33  E-value=0.02  Score=46.19  Aligned_cols=144  Identities=16%  Similarity=0.181  Sum_probs=100.6

Q ss_pred             HHHHHhcC--CCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHH
Q 012897          211 PRLVELLG--HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQA  288 (454)
Q Consensus       211 ~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  288 (454)
                      ..++..+.  ...+.+|..++-++..+..    ..+.-....+-+.+-..+... +.+-...++.++..+....++....
T Consensus         6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l~----~~~~~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~   80 (157)
T PF11701_consen    6 DTLLTSLDMLRQPEEVRSHALVILSKLLD----AAREEFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSE   80 (157)
T ss_dssp             CHHHHHHHCTTTSCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred             HHHHHHhcccCCCHhHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHH
Confidence            34444443  3567899999999888852    112223334445666666666 6678888999999999888888777


Q ss_pred             HH-hCCChHHHHHHhh--hcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCC-CCHH-HHHHHHHHHHH
Q 012897          289 VI-DAGLVGPLVNLLQ--NAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC-PDPR-IVTVCLEGLEN  362 (454)
Q Consensus       289 l~-~~~~i~~L~~ll~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~-v~~~al~~L~~  362 (454)
                      ++ ..|+++.+..++.  .++..++..++.+|..-+.  +.. +...+.+.+++.|.+.++. +++. ++..++-+|.+
T Consensus        81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~--d~~-~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI--DKS-CRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT--SHH-HHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc--cHH-HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            77 7889999999999  6789999999999987776  434 4444556789999999964 4455 66666555543

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=96.31  E-value=1.2  Score=43.32  Aligned_cols=287  Identities=14%  Similarity=0.108  Sum_probs=149.0

Q ss_pred             HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHH
Q 012897           10 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK   89 (454)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~   89 (454)
                      -..|..|++.|...+...+...+..     +-..--.++.....++.|..++..|..+......... ...    ..+..
T Consensus         4 l~~R~~a~~~l~~~i~~~~~~~i~~-----iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~-~~R----~~fF~   73 (464)
T PF11864_consen    4 LSERIKAAEELCESIQKYPLSSIEE-----IWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSG-LMR----AEFFR   73 (464)
T ss_pred             HHHHHHHHHHHHHHHHhCCchHHHH-----HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH-HHH----HHHHH
Confidence            4568888999988877742222211     2333345566665578999999999998874433111 111    11122


Q ss_pred             hhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhh--------------------------hhhHH
Q 012897           90 LLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA--------------------------KLSML  142 (454)
Q Consensus        90 lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--------------------------~~~~~  142 (454)
                      .+. ...++.-..-+.+|..|+.+....  ...+.+..+.+..-+...-                          +....
T Consensus        74 ~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l  151 (464)
T PF11864_consen   74 DISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNL  151 (464)
T ss_pred             HHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhH
Confidence            222 233444445566666676554433  2245555666665552111                          12233


Q ss_pred             HHHHHHHHhhcCCC-CCCChhhhhchHHHHHHhh-cCCChhHHHHHHHHHHHhccCC---hHHHHHHHHhCcHHHHHHhc
Q 012897          143 RNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV-HSNDEEVLTDACWALSYLSDGT---NDKIQAVIEAGVCPRLVELL  217 (454)
Q Consensus       143 ~~a~~~L~~l~~~~-~~~~~~~~~~~l~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~~~i~~L~~ll  217 (454)
                      ...+..+.++.... .........+++..++.+. ++.++.....++..+-.+....   ++...     .++..|....
T Consensus       152 ~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-----~~i~vLCsi~  226 (464)
T PF11864_consen  152 SDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-----PCIEVLCSIV  226 (464)
T ss_pred             HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-----HHHHHHhhHh
Confidence            33444444444443 2223333344444444442 2233333344444443333211   11111     1222233332


Q ss_pred             CCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCC-----cchhHHHHHHHHHHHHhcCCHHHHHHHH-h
Q 012897          218 GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS-----HKKSIKKEACWTISNITAGNRDQIQAVI-D  291 (454)
Q Consensus       218 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~  291 (454)
                        ...+....+-.++.||+...-.  .     ..+..|..+|.++     .+..+.+.|+..+..+..+..+...+-+ -
T Consensus       227 --~~~~l~~~~w~~m~nL~~S~~g--~-----~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~  297 (464)
T PF11864_consen  227 --NSVSLCKPSWRTMRNLLKSHLG--H-----SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPF  297 (464)
T ss_pred             --cccccchhHHHHHHHHHcCccH--H-----HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecc
Confidence              2336777788888888863221  1     2356677777321     1455677888889888875422222222 1


Q ss_pred             CC--ChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897          292 AG--LVGPLVNLLQNAEFDIKKEAAWAISNATS  322 (454)
Q Consensus       292 ~~--~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  322 (454)
                      .-  +++.+...++.+++.+-......+.++..
T Consensus       298 ~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~  330 (464)
T PF11864_consen  298 SPSSVLPSLLNALKSNSPRVDYEILLLINRLLD  330 (464)
T ss_pred             cHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence            22  78888888888877777778888877773

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.25  E-value=0.24  Score=48.51  Aligned_cols=105  Identities=17%  Similarity=0.140  Sum_probs=78.0

Q ss_pred             cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 012897           38 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR  117 (454)
Q Consensus        38 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  117 (454)
                      .+.+..+++...+++ ..+|..++..|..+.....+ ++.-+-.++...+..-+.+..+.+|.+|+.+|+.+-.+...- 
T Consensus        84 ~~~f~hlLRg~Eskd-k~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de-  160 (892)
T KOG2025|consen   84 AGTFYHLLRGTESKD-KKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE-  160 (892)
T ss_pred             HHHHHHHHhcccCcc-hhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC-
Confidence            456667777777778 89999999999999984333 333334467788888888899999999999999996332211 


Q ss_pred             HHHHhcCChHHHHHHhchhhhhhHHHHHHHHH
Q 012897          118 DLVLSQGALIPLLAQLNERAKLSMLRNATWTL  149 (454)
Q Consensus       118 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L  149 (454)
                          +..+...+..+++.+++++|++.++..+
T Consensus       161 ----e~~v~n~l~~liqnDpS~EVRRaaLsnI  188 (892)
T KOG2025|consen  161 ----ECPVVNLLKDLIQNDPSDEVRRAALSNI  188 (892)
T ss_pred             ----cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence                1234677888888899999999876544

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=96.22  E-value=0.45  Score=44.50  Aligned_cols=188  Identities=12%  Similarity=0.131  Sum_probs=119.5

Q ss_pred             HHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC-----------------------C------hhHHHHHH----
Q 012897           15 EATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-----------------------Y------PQLQFEAA----   61 (454)
Q Consensus        15 ~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~-----------------------~------~~v~~~a~----   61 (454)
                      .|++.|-.++... +.....+.+.+++..+++.++..-                       .      +.-|...+    
T Consensus         3 ~av~~ld~~~~~~-~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lL   81 (379)
T PF06025_consen    3 RAVRFLDTFIDSS-PDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLL   81 (379)
T ss_pred             HHHHHHHHHHhcc-HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHH
Confidence            4566666666654 455666778888888876543210                       0      01123333    


Q ss_pred             HHHHHhcC---CCchhhHHHHh-CCChHHHHHhhCCCC---HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc
Q 012897           62 WALTNIAS---GTSENTKVVID-HGAVPIFVKLLASPS---DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN  134 (454)
Q Consensus        62 ~~L~~l~~---~~~~~~~~~~~-~g~i~~L~~lL~~~~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~  134 (454)
                      +.+..+..   +..+....+++ ..+...|...+++..   +.+-..++.++..+....|..-..+.+.|.++.+++.+.
T Consensus        82 k~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~  161 (379)
T PF06025_consen   82 KFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAIT  161 (379)
T ss_pred             HHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHh
Confidence            33333333   22333344455 455666777777643   788888999999999888888889999999999999885


Q ss_pred             -h--hhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCC-------hhHHHHHHHHHHHhccCChHHHHH
Q 012897          135 -E--RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSND-------EEVLTDACWALSYLSDGTNDKIQA  203 (454)
Q Consensus       135 -~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~-------~~v~~~a~~~L~~l~~~~~~~~~~  203 (454)
                       .  .++.++....-.++..||-+..........+.++.+++++.+++       .+........+-.+.++.+.....
T Consensus       162 ~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~  240 (379)
T PF06025_consen  162 AKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPD  240 (379)
T ss_pred             ccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHH
Confidence             2  24678888888899999988755555555677888887776542       123333344445555665544443

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=96.19  E-value=0.75  Score=44.22  Aligned_cols=109  Identities=17%  Similarity=0.151  Sum_probs=81.5

Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897          161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD  240 (454)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  240 (454)
                      .....+.+..++..+.+.+..|+..++..|+.++..-.+. +..+-.+++..|...+-+..+.||..|+.+|+.+-....
T Consensus        86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eI-De~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~  164 (885)
T COG5218          86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREI-DEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL  164 (885)
T ss_pred             hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence            4556788888888889999999999999999887654433 444555888889888889999999999999988864332


Q ss_pred             cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHH
Q 012897          241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI  275 (454)
Q Consensus       241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L  275 (454)
                      ...     ......+..+++..++.+||+.|+.-+
T Consensus       165 nee-----n~~~n~l~~~vqnDPS~EVRr~allni  194 (885)
T COG5218         165 NEE-----NRIVNLLKDIVQNDPSDEVRRLALLNI  194 (885)
T ss_pred             ChH-----HHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence            111     123456777777666889999886544

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=96.15  E-value=0.18  Score=49.37  Aligned_cols=228  Identities=15%  Similarity=0.165  Sum_probs=150.0

Q ss_pred             HHHHHcCCHHHHHHhhcCCC-ChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 012897           33 EEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAG  111 (454)
Q Consensus        33 ~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~  111 (454)
                      +.++...+++.|+..+.-++ ..++..- +-.++.... .++     ++.+++|.+++++..++..+|-..+.-+-+...
T Consensus       287 e~i~~~kvlp~Ll~~~~~g~a~~~~ltp-l~k~~k~ld-~~e-----yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~  359 (690)
T KOG1243|consen  287 EEIIASKVLPILLAALEFGDAASDFLTP-LFKLGKDLD-EEE-----YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID  359 (690)
T ss_pred             HHHHHHHHHHHHHHHhhccccchhhhhH-HHHhhhhcc-ccc-----cccchhhhHHHHhcCcchHHHHHHHHhHHHHhh
Confidence            34455556777766665544 1222211 122222222 122     567899999999999999999877766666553


Q ss_pred             CChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHH
Q 012897          112 DSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALS  191 (454)
Q Consensus       112 ~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~  191 (454)
                      .   ..+.+.+..+++.+..-+ .+.++.+++..+.++..|+.--...  ......+..+..+-.+.+..++.+..-|++
T Consensus       360 ~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlg  433 (690)
T KOG1243|consen  360 H---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLG  433 (690)
T ss_pred             h---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhchh--hhcHHHHHHHHhhCccccCcccccceeeec
Confidence            3   345566677788888888 7888999999999988887542111  233456666666666677889999998999


Q ss_pred             HhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHH
Q 012897          192 YLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA  271 (454)
Q Consensus       192 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a  271 (454)
                      .++.......   .+.-+...+..-+.++-..-|.++...+.......+   ..-+...+++.+..+..++ +..+|..|
T Consensus       434 ki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~---~~~va~kIlp~l~pl~vd~-e~~vr~~a  506 (690)
T KOG1243|consen  434 KIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFD---QSEVANKILPSLVPLTVDP-EKTVRDTA  506 (690)
T ss_pred             ccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcccccc---hhhhhhhccccccccccCc-ccchhhHH
Confidence            8886643221   222223344445677777788888888766654333   2334557888888888888 88899988


Q ss_pred             HHHHHHHhc
Q 012897          272 CWTISNITA  280 (454)
Q Consensus       272 ~~~L~nl~~  280 (454)
                      ..++..+-.
T Consensus       507 ~~~i~~fl~  515 (690)
T KOG1243|consen  507 EKAIRQFLE  515 (690)
T ss_pred             HHHHHHHHh
Confidence            888776654

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.10  E-value=1.7  Score=46.74  Aligned_cols=148  Identities=16%  Similarity=0.158  Sum_probs=93.8

Q ss_pred             CcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHH
Q 012897          208 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ  287 (454)
Q Consensus       208 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~  287 (454)
                      +++|.|..-|...+..+|..|...++.+......... =-........+.-+.+. +..||..++....++...++....
T Consensus       259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~  336 (1266)
T KOG1525|consen  259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK  336 (1266)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence            6788888888899999999999999999875442221 01124566677777777 889999999998888776555432


Q ss_pred             HHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 012897          288 AVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV  366 (454)
Q Consensus       288 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~  366 (454)
                      ...   ....+..  .+.|++++.....++..+..  . .....+... .+..+.+.+.+..+.||..|+..|..+.+.
T Consensus       337 ~~~---~~~~l~~--~~~D~~~rir~~v~i~~~~v--~-~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~  406 (1266)
T KOG1525|consen  337 AST---ILLALRE--RDLDEDVRVRTQVVIVACDV--M-KFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN  406 (1266)
T ss_pred             HHH---HHHHHHh--hcCChhhhheeeEEEEEeeh--h-HhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            221   2222222  22344444333332222211  1 111122223 666777778888999999999999999874

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=96.02  E-value=0.18  Score=51.38  Aligned_cols=189  Identities=14%  Similarity=0.073  Sum_probs=133.4

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChh
Q 012897           83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD  162 (454)
Q Consensus        83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  162 (454)
                      +-+.+..-+.+++..-|..++..+...+.... ........+.+..++.....+.+..+...++.+|..++..-......
T Consensus       254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~  332 (815)
T KOG1820|consen  254 ITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK  332 (815)
T ss_pred             cChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH
Confidence            34455555666888889999988888775543 11111122334555566557778888889999999988775444555


Q ss_pred             hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCcc-
Q 012897          163 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF-  241 (454)
Q Consensus       163 ~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-  241 (454)
                      +...++|.++..+......++..+..++-.++....-       ....+.++..+.+.++.++..+...+.......+. 
T Consensus       333 ~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~  405 (815)
T KOG1820|consen  333 YAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK  405 (815)
T ss_pred             HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence            6678889999999888888888887777666543221       14577888999999999999988888777765441 


Q ss_pred             chhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897          242 QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  280 (454)
Q Consensus       242 ~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~  280 (454)
                      ....-.-.+.++.++....+. +..||..|..+++-+..
T Consensus       406 ~~~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  406 TVEKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK  443 (815)
T ss_pred             CcchhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence            111112236678888888888 89999999999887765

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.02  E-value=0.14  Score=44.45  Aligned_cols=101  Identities=17%  Similarity=0.132  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHH
Q 012897           10 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK   89 (454)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~   89 (454)
                      ......|+..|..++--. ++....+.+...++.|+.+|.....+.++..++.+|..+..+++.+...+-+.+++..++.
T Consensus       105 ~~li~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~  183 (257)
T PF08045_consen  105 DSLIALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCS  183 (257)
T ss_pred             hHHHHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHH
Confidence            445667888888887665 6667778888999999999965544899999999999999889999999999999999999


Q ss_pred             hhCC--CCHHHHHHHHHHHHHhhC
Q 012897           90 LLAS--PSDDVREQAVWALGNVAG  111 (454)
Q Consensus        90 lL~~--~~~~v~~~a~~~L~~l~~  111 (454)
                      ++++  .+.+++-.++..|.-+..
T Consensus       184 llk~~~~~~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  184 LLKSKSTDRELRLKCIEFLYFYLM  207 (257)
T ss_pred             HHccccccHHHhHHHHHHHHHHHc
Confidence            9987  458888888888877664

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=95.98  E-value=0.92  Score=46.28  Aligned_cols=93  Identities=13%  Similarity=0.089  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHH
Q 012897           10 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK   89 (454)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~   89 (454)
                      ..++..|+..+....+....   ..+.+.+ +-.|-.+.++.- ..++..++..|+.+....+...  -+....+..|+.
T Consensus       591 ~~v~k~a~~~l~S~l~~cD~---~~~fe~~-L~iLq~lCrd~~-vsvrk~~~~Sltel~~~~pr~~--~~~~~wl~~li~  663 (1529)
T KOG0413|consen  591 APVKKAACSLLKSYLSYCDE---ASKFEVV-LSILQMLCRDRM-VSVRKTGADSLTELMLRDPRLF--SLSSKWLHTLIS  663 (1529)
T ss_pred             cccchhhHHHHHHHHhccch---hhcchhH-HHHHHHHhcCcc-hHHHHHHHHHHHHHHhhCchhh--hhhHHHHHHHHH
Confidence            46777777777777666411   1122222 444555555566 7889999999998887555443  334566777888


Q ss_pred             hhCCCCHHHHHHHHHHHHHh
Q 012897           90 LLASPSDDVREQAVWALGNV  109 (454)
Q Consensus        90 lL~~~~~~v~~~a~~~L~~l  109 (454)
                      ++.+.+..+.+.+...|..+
T Consensus       664 ~~~d~es~v~e~a~~~i~k~  683 (1529)
T KOG0413|consen  664 MLNDTESDVTEHARKLIMKV  683 (1529)
T ss_pred             HHhccHHHHHHHHHHHHHHH
Confidence            88877777777777655544

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.94  E-value=0.053  Score=43.71  Aligned_cols=146  Identities=18%  Similarity=0.166  Sum_probs=96.0

Q ss_pred             ChHHHHHhhcC-CcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHH
Q 012897          251 ALPYLLGLLTH-SHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQI  329 (454)
Q Consensus       251 ~l~~L~~~L~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~  329 (454)
                      .++.++..|.. ...+.+|..+.-++..+....++   . ...-+-+.+-..+...+.+-...+..++..+... .++..
T Consensus         4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~~~~---~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~-~~dv~   78 (157)
T PF11701_consen    4 ELDTLLTSLDMLRQPEEVRSHALVILSKLLDAARE---E-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPG-PPDVG   78 (157)
T ss_dssp             CCCHHHHHHHCTTTSCCHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTT-THHHH
T ss_pred             HHHHHHHHhcccCCCHhHHHHHHHHHHHHHHHhHH---H-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCC-CHHHH
Confidence            34555666654 43778999999999888522122   1 1122334444555555666777889999888776 45555


Q ss_pred             HHH-HHcCCcHHHhhccC--CCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHh-cCCCH
Q 012897          330 KYL-VREGCIKPLCDLFV--CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ-SHDNN  405 (454)
Q Consensus       330 ~~l-~~~~~i~~L~~~l~--~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~-~~~~~  405 (454)
                      ..+ ..+|+++.+..+..  .++..+...++.+|..-+....               +..+....+++-|.++. +++++
T Consensus        79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~---------------~r~~I~~~~~~~L~~~~~~~~~~  143 (157)
T PF11701_consen   79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKS---------------CRTFISKNYVSWLKELYKNSKDD  143 (157)
T ss_dssp             HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHH---------------HHHCCHHHCHHHHHHHTTTCC-H
T ss_pred             HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHH---------------HHHHHHHHHHHHHHHHHccccch
Confidence            544 46789999999998  7888888888888776653322               33344466788999887 56666


Q ss_pred             H-HHHHHHHHHH
Q 012897          406 E-IYEKAVKILE  416 (454)
Q Consensus       406 ~-v~~~a~~~l~  416 (454)
                      . ++.+|.-.|-
T Consensus       144 ~~ir~~A~v~L~  155 (157)
T PF11701_consen  144 SEIRVLAAVGLC  155 (157)
T ss_dssp             H-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            6 7888876654

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=95.92  E-value=0.46  Score=44.30  Aligned_cols=275  Identities=19%  Similarity=0.162  Sum_probs=139.2

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC-CCHHHHHHH-HHHHHHhhCCChhhHH
Q 012897           41 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQA-VWALGNVAGDSPRCRD  118 (454)
Q Consensus        41 l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a-~~~L~~l~~~~~~~~~  118 (454)
                      +..+++-+.......+|..++--|+.-+. ++.++..+..+|.++.+++.+.+ ++..+...+ +.++.-++.+.. .-.
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~  100 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH  100 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence            66677777755547889888888888888 89999999999999999999955 444244333 444444544443 223


Q ss_pred             HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhc---------CCChhHHHHHHHH
Q 012897          119 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH---------SNDEEVLTDACWA  189 (454)
Q Consensus       119 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~---------~~~~~v~~~a~~~  189 (454)
                      .+........+++++.-+....+.....      ........ .........+...+.         .....-+..++.+
T Consensus       101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~ls-k~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~  173 (361)
T PF07814_consen  101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLS-KVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA  173 (361)
T ss_pred             hhhchhHHHHHHHHhccccccccccchh------hhhhhhhh-HHHHHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence            3334444555566663000000000000      00000000 000111111112210         0112223334444


Q ss_pred             HHHhc--------------cCChHHHHHHHHhCcHHHHHHhcCC----C-------CC-----cchhhHHHHHhHhhccC
Q 012897          190 LSYLS--------------DGTNDKIQAVIEAGVCPRLVELLGH----P-------SP-----SVLIPALRTVGNIVTGD  239 (454)
Q Consensus       190 L~~l~--------------~~~~~~~~~~~~~~~i~~L~~ll~~----~-------~~-----~v~~~a~~~L~~l~~~~  239 (454)
                      +-.++              ...+...+.+...|++..++..+.+    .       .+     .....++++|-+.+..+
T Consensus       174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~  253 (361)
T PF07814_consen  174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS  253 (361)
T ss_pred             HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence            44332              1111223445566778888777641    1       11     13455788888888766


Q ss_pred             ccchhhhhcc--CChHHHH-HhhcCC--cchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhh-----------
Q 012897          240 DFQTQCIITY--GALPYLL-GLLTHS--HKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQ-----------  303 (454)
Q Consensus       240 ~~~~~~~~~~--~~l~~L~-~~L~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-----------  303 (454)
                      ......++..  +.+..+. .++...  ........++..+.|++..++.....+...++...+..+..           
T Consensus       254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~  333 (361)
T PF07814_consen  254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNY  333 (361)
T ss_pred             ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccccc
Confidence            6555444432  2232222 222222  13344567888889999887766666554433222221111           


Q ss_pred             ---hcchhhHHHHHHHHHHhcCCC
Q 012897          304 ---NAEFDIKKEAAWAISNATSGG  324 (454)
Q Consensus       304 ---~~~~~v~~~a~~aL~~l~~~~  324 (454)
                         ....+...-++.++.|++...
T Consensus       334 ~~~~~~~D~~IL~Lg~LINL~E~s  357 (361)
T PF07814_consen  334 VPEESSFDILILALGLLINLVEHS  357 (361)
T ss_pred             ccccccchHHHHHHHhHHHheeeC
Confidence               113455666777777777654

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=95.89  E-value=0.72  Score=40.71  Aligned_cols=219  Identities=15%  Similarity=0.155  Sum_probs=124.5

Q ss_pred             HHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHH
Q 012897           43 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLV  120 (454)
Q Consensus        43 ~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~  120 (454)
                      .|-..|.+++ +.+|..|+..|..+...-+..   .....-+..|+.++.+  .+......++..+..+.....-.....
T Consensus         3 ~Lg~~Ltsed-~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~   78 (262)
T PF14500_consen    3 SLGEYLTSED-PIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESA   78 (262)
T ss_pred             chhhhhCCCC-HHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhH
Confidence            3556788888 899999999999988743322   1222335666665544  455555555666666653222111110


Q ss_pred             HhcCChHHHHHHhc-hhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCCh
Q 012897          121 LSQGALIPLLAQLN-ERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS-NDEEVLTDACWALSYLSDGTN  198 (454)
Q Consensus       121 ~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~  198 (454)
                        ...+..+.+... +......|..+...+..+..+....-......++..+++.++. .||.-...+...+..+...-+
T Consensus        79 --~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~  156 (262)
T PF14500_consen   79 --VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD  156 (262)
T ss_pred             --HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence              112233333221 2224567788888888887664211122335667777777764 478877777777766654433


Q ss_pred             HHHHHHHHhCcHHHHHHhcC--------C-C-CC-c-chhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchh
Q 012897          199 DKIQAVIEAGVCPRLVELLG--------H-P-SP-S-VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKS  266 (454)
Q Consensus       199 ~~~~~~~~~~~i~~L~~ll~--------~-~-~~-~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~  266 (454)
                      .  .     ...+.+...+.        . + ++ . .+..--..|.+....++..     ..-.++.|++.|.++ .+.
T Consensus       157 ~--~-----~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~-~~~  223 (262)
T PF14500_consen  157 I--S-----EFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDST-SPS  223 (262)
T ss_pred             c--c-----hhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCC-CcH
Confidence            1  1     22333333321        1 1 11 2 2333334444444434322     235689999999999 889


Q ss_pred             HHHHHHHHHHHHhc
Q 012897          267 IKKEACWTISNITA  280 (454)
Q Consensus       267 v~~~a~~~L~nl~~  280 (454)
                      ++..++.+|..++.
T Consensus       224 ~K~D~L~tL~~c~~  237 (262)
T PF14500_consen  224 VKLDSLQTLKACIE  237 (262)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998886

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.88  E-value=0.012  Score=32.45  Aligned_cols=29  Identities=28%  Similarity=0.438  Sum_probs=25.5

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 012897           40 VVPRFVEFLMREDYPQLQFEAAWALTNIAS   69 (454)
Q Consensus        40 ~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~   69 (454)
                      ++|.+++++++++ +++|..|+++|+.++.
T Consensus         1 llp~l~~~l~D~~-~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPS-PEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SS-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCC-HHHHHHHHHHHHHHHh
Confidence            3789999999999 9999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.88  E-value=0.017  Score=31.91  Aligned_cols=29  Identities=31%  Similarity=0.393  Sum_probs=25.6

Q ss_pred             hHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 012897          167 ALPALAQLVHSNDEEVLTDACWALSYLSD  195 (454)
Q Consensus       167 ~l~~l~~ll~~~~~~v~~~a~~~L~~l~~  195 (454)
                      ++|.+.+++.+++++||..|+.+|+.++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            47899999999999999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=95.86  E-value=0.15  Score=52.03  Aligned_cols=191  Identities=14%  Similarity=0.104  Sum_probs=131.1

Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh-cCCCCCcchhhHHHHHhHhhccCccchhhh
Q 012897          168 LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LGHPSPSVLIPALRTVGNIVTGDDFQTQCI  246 (454)
Q Consensus       168 l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  246 (454)
                      -+.+-.-+.+.+..-+..++..+............ ....+.+..++.. +.+.+..+...++.+|..++..........
T Consensus       255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~-~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~  333 (815)
T KOG1820|consen  255 TKNLETEMLSKKWKDRKEALEELVAILEEAKKEIV-KGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY  333 (815)
T ss_pred             ChHHHHhhhccchHHHHHHHHHHHHHHhccccccc-cCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence            33444455677888888888888877655431111 1111333333333 356677888889999999987655443322


Q ss_pred             hccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCH
Q 012897          247 ITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTH  326 (454)
Q Consensus       247 ~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~  326 (454)
                       ..+..+.++..+... ...++..+..++-.++...+-       ..+++.+...+.++++.++..+...+.......++
T Consensus       334 -~~~v~p~lld~lkek-k~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~  404 (815)
T KOG1820|consen  334 -AKNVFPSLLDRLKEK-KSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP  404 (815)
T ss_pred             -HHhhcchHHHHhhhc-cHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence             236778888888888 788888877777766653222       24678888999999999999988888777665442


Q ss_pred             HHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhh
Q 012897          327 EQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGE  368 (454)
Q Consensus       327 ~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~  368 (454)
                      .....-.-.++++.++...++.+.+||.+++.++..+++...
T Consensus       405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G  446 (815)
T KOG1820|consen  405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG  446 (815)
T ss_pred             cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence            222222334678999999999999999999999999987543

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=95.79  E-value=1.5  Score=49.28  Aligned_cols=265  Identities=13%  Similarity=0.066  Sum_probs=141.7

Q ss_pred             CCCHHHHHHHHHHHHHHhccCC--CCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCh
Q 012897            7 SDDSSLQLEATTQFRKLLSIER--SPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAV   84 (454)
Q Consensus         7 s~d~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i   84 (454)
                      +.+..+...|+..|++++...-  .+....-.....+.++..++.+..+.++++..++|+.++.....    .-+..| =
T Consensus      1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~----~nIkSG-W 1222 (1780)
T PLN03076       1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV----NNVKSG-W 1222 (1780)
T ss_pred             CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH----hhhhcC-c
Confidence            4467889999999988765421  12111223345678888888776668999999999999876221    222334 3


Q ss_pred             HHHHHhh----CCCCHHHHHHHHHHHHHhhCCChhh-----HHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhc--
Q 012897           85 PIFVKLL----ASPSDDVREQAVWALGNVAGDSPRC-----RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC--  153 (454)
Q Consensus        85 ~~L~~lL----~~~~~~v~~~a~~~L~~l~~~~~~~-----~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~--  153 (454)
                      +.+..++    .+.++.+...+..++..++.+.-..     ...+  ...+..+..+..+..+.++--.|+..|+.++  
T Consensus      1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076       1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred             HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence            3333433    3467888888888888776432110     0111  1234444444433334445455555555431  


Q ss_pred             --CCC----------C-------------C------CChhhhhchHHHH---HHhhcCCChhHHHHHHHHHHHhccC---
Q 012897          154 --RGK----------P-------------Q------PPFDQVRPALPAL---AQLVHSNDEEVLTDACWALSYLSDG---  196 (454)
Q Consensus       154 --~~~----------~-------------~------~~~~~~~~~l~~l---~~ll~~~~~~v~~~a~~~L~~l~~~---  196 (454)
                        ...          .             .      .........+|.|   ..+.....++||..|+..|..+...   
T Consensus      1301 La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076       1301 LAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred             HHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence              100          0             0      0000112234444   4445677899999999999877632   


Q ss_pred             --ChHHHHHHHHhCcHHHHHHhcCCC----------------C-C--c----chhhHHHHHhHhhccCccchhhh--hcc
Q 012897          197 --TNDKIQAVIEAGVCPRLVELLGHP----------------S-P--S----VLIPALRTVGNIVTGDDFQTQCI--ITY  249 (454)
Q Consensus       197 --~~~~~~~~~~~~~i~~L~~ll~~~----------------~-~--~----v~~~a~~~L~~l~~~~~~~~~~~--~~~  249 (454)
                        +++....+++ +++-.++..++..                + .  +    +...+..+|..++.--..+...+  +=.
T Consensus      1381 ~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~ 1459 (1780)
T PLN03076       1381 LFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLK 1459 (1780)
T ss_pred             cCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              2334444454 4444444443210                0 0  0    12333344444443211121111  112


Q ss_pred             CChHHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897          250 GALPYLLGLLTHSHKKSIKKEACWTISNITA  280 (454)
Q Consensus       250 ~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~  280 (454)
                      +++..|..++..+ +..+-+.+..+|.++..
T Consensus      1460 ~~l~ll~~ci~q~-n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076       1460 KVLMLLVSFIKRP-HQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred             HHHHHHHHHHcCc-hHHHHHHHHHHHHHHHH
Confidence            4555666666777 77888888888888775

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.73  E-value=2.3  Score=42.05  Aligned_cols=190  Identities=13%  Similarity=0.083  Sum_probs=120.3

Q ss_pred             HHHHHhcCCCCCcchhhHHHHHhHhhccCcc-----chhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHH
Q 012897          211 PRLVELLGHPSPSVLIPALRTVGNIVTGDDF-----QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ  285 (454)
Q Consensus       211 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-----~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~  285 (454)
                      +.+..-|+-.+..||.+|+..+.++---.+.     ....+++ +-...+.++|.++ -+.+|..|..-++.....    
T Consensus       177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~-~p~VRS~a~~gv~k~~s~----  250 (1005)
T KOG1949|consen  177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDP-YPMVRSTAILGVCKITSK----  250 (1005)
T ss_pred             HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCC-CchHHHHHHHHHHHHHHH----
Confidence            4455556778999999999998887532221     1223333 3346788999999 999999998888877642    


Q ss_pred             HHHHHhCCChHHHHHHhh-----hcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHH
Q 012897          286 IQAVIDAGLVGPLVNLLQ-----NAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL  360 (454)
Q Consensus       286 ~~~l~~~~~i~~L~~ll~-----~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L  360 (454)
                      .+.++-..++..++.-+.     +...+||......|..++.+.  ..-.. .+ .++++|-..+.+....|+.+..+.|
T Consensus       251 fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~-le-~~Lpal~~~l~D~se~VRvA~vd~l  326 (1005)
T KOG1949|consen  251 FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPL-LE-QLLPALRYSLHDNSEKVRVAFVDML  326 (1005)
T ss_pred             HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhH-HH-HHHHhcchhhhccchhHHHHHHHHH
Confidence            233333334444443332     235689988999998887743  22122 11 2566777788888899999998888


Q ss_pred             HHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCCc
Q 012897          361 ENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDE  425 (454)
Q Consensus       361 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~  425 (454)
                      ..+=...- .           .|...+.   .-..|.+|..+.-+.-+..+.-++..|++...++
T Consensus       327 l~ik~vra-~-----------~f~~I~~---~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~e  376 (1005)
T KOG1949|consen  327 LKIKAVRA-A-----------KFWKICP---MDHILVRLETDSRPVSRRLVSLIFNSFLPVNKPE  376 (1005)
T ss_pred             HHHHhhhh-h-----------hhhcccc---HHHHHHHHhccccHHHHHHHHHHHHhhcCCCCcH
Confidence            87743210 0           0222222   2244556666666667777788888888876643

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.65  E-value=0.13  Score=34.98  Aligned_cols=66  Identities=24%  Similarity=0.352  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhh-cchhhHHHHHHHHHHhcCCCCHHHHHHHHHcC
Q 012897          268 KKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN-AEFDIKKEAAWAISNATSGGTHEQIKYLVREG  336 (454)
Q Consensus       268 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~  336 (454)
                      .+.|.|++++++.. +.....+.+.++++.++++... +...+|..+..+|+-++.  +.+-.+.+.+.|
T Consensus         4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence            57899999999864 5556566678999999999876 588999999999999988  556555555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.61  E-value=2  Score=43.84  Aligned_cols=175  Identities=18%  Similarity=0.209  Sum_probs=109.2

Q ss_pred             HHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHH-hCCChHHHHHHhhhc-chh
Q 012897          231 TVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI-DAGLVGPLVNLLQNA-EFD  308 (454)
Q Consensus       231 ~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~-~~~  308 (454)
                      ++++....++..++.+++.+++..+...++.-....++..+...++|++...+..-.... +.--...+..++..- +.+
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            778888888889999999999999999998655778999999999999873221111111 100012233333333 336


Q ss_pred             hHHHHHHHHHHhcCCCCH--------HHHHHHHH--------------cCCcHH-HhhccC-CCCHHHHHHHHHHHHHHH
Q 012897          309 IKKEAAWAISNATSGGTH--------EQIKYLVR--------------EGCIKP-LCDLFV-CPDPRIVTVCLEGLENIL  364 (454)
Q Consensus       309 v~~~a~~aL~~l~~~~~~--------~~~~~l~~--------------~~~i~~-L~~~l~-~~~~~v~~~al~~L~~l~  364 (454)
                      .-..|+..|..+...+++        .....+.+              ...... +..++. +..+..+..|++++.+++
T Consensus       574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~  653 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVL  653 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHH
Confidence            677788888877775321        00011110              011122 333343 344567788888888888


Q ss_pred             HhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHh-cCCCHHHHHHHHHHHHHh
Q 012897          365 KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ-SHDNNEIYEKAVKILETY  418 (454)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~-~~~~~~v~~~a~~~l~~~  418 (454)
                      .....             ++..+.+.|++..+.++. .+...+++..+..++...
T Consensus       654 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  695 (699)
T KOG3665|consen  654 EQNKE-------------YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC  695 (699)
T ss_pred             HcChh-------------hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence            75433             577888899999998773 333566777777666544

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=95.58  E-value=1.3  Score=39.05  Aligned_cols=219  Identities=14%  Similarity=0.093  Sum_probs=126.5

Q ss_pred             ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcC--CCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897            3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR--EDYPQLQFEAAWALTNIASGTSENTKVVID   80 (454)
Q Consensus         3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (454)
                      ..|.++|+.+|..|+..|..++..-+...    ....-+..|+.++.+  .+ ......++..+..+.. ........ .
T Consensus         6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~----L~~~ev~~L~~F~~~rl~D-~~~~~~~l~gl~~L~~-~~~~~~~~-~   78 (262)
T PF14500_consen    6 EYLTSEDPIIRAKALELLSEVLERLPPDF----LSRQEVQVLLDFFCSRLDD-HACVQPALKGLLALVK-MKNFSPES-A   78 (262)
T ss_pred             hhhCCCCHHHHHHHHHHHHHHHHhCCHhh----ccHHHHHHHHHHHHHHhcc-HhhHHHHHHHHHHHHh-CcCCChhh-H
Confidence            35789999999999999999988753222    111124444444332  23 4445555777777664 22211111 1


Q ss_pred             CCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHHHHH--hcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC
Q 012897           81 HGAVPIFVKLLA--SPSDDVREQAVWALGNVAGDSPRCRDLVL--SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  156 (454)
Q Consensus        81 ~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  156 (454)
                      ..++..+.+-..  +.....|..+...+..+.....   ..+.  ..+.+..+++.+..+.||.-...+...+..+...-
T Consensus        79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~---~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~  155 (262)
T PF14500_consen   79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR---EALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEF  155 (262)
T ss_pred             HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH---HHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence            122333333222  2335678888888888864422   2222  23457778888877788988888888888887664


Q ss_pred             CCCChhhhhchHHHHHHhhc-----C-CCh-h-HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhH
Q 012897          157 PQPPFDQVRPALPALAQLVH-----S-NDE-E-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPA  228 (454)
Q Consensus       157 ~~~~~~~~~~~l~~l~~ll~-----~-~~~-~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a  228 (454)
                      +.  ......+...+....-     . +|+ . .+...-..|.+.....+     .+..-.++.++..|.++.+.++..+
T Consensus       156 ~~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~-----~fa~~~~p~LleKL~s~~~~~K~D~  228 (262)
T PF14500_consen  156 DI--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP-----LFAPFAFPLLLEKLDSTSPSVKLDS  228 (262)
T ss_pred             cc--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH-----hhHHHHHHHHHHHHcCCCcHHHHHH
Confidence            42  2222333333333221     1 122 1 23333334444333333     2233678999999999999999999


Q ss_pred             HHHHhHhhcc
Q 012897          229 LRTVGNIVTG  238 (454)
Q Consensus       229 ~~~L~~l~~~  238 (454)
                      +.+|..++..
T Consensus       229 L~tL~~c~~~  238 (262)
T PF14500_consen  229 LQTLKACIEN  238 (262)
T ss_pred             HHHHHHHHHH
Confidence            9999888753

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.45  E-value=3.2  Score=41.65  Aligned_cols=303  Identities=11%  Similarity=0.087  Sum_probs=157.6

Q ss_pred             HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh--CCChHHH
Q 012897           10 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID--HGAVPIF   87 (454)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L   87 (454)
                      .-+|...++.+.+..+.......+    .-.-..+++++++.++--++..+++++.-...+-.-..+.+..  ......+
T Consensus       501 RiiRRRVa~ilg~Wvsvq~~~e~k----~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~l  576 (978)
T KOG1993|consen  501 RIIRRRVAWILGQWVSVQQKLELK----PLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLL  576 (978)
T ss_pred             hHHHHHHHHHHhhhhheechHhHH----HHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHH
Confidence            345667777777766543111111    1234567888888865778889999998888743333333221  3445555


Q ss_pred             HHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHh---c--hhhhhhHHHHHHHHHHhhcCCCCCCCh
Q 012897           88 VKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQL---N--ERAKLSMLRNATWTLSNFCRGKPQPPF  161 (454)
Q Consensus        88 ~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l---~--~~~~~~~~~~a~~~L~~l~~~~~~~~~  161 (454)
                      .+++.. +.-+.|...+.+++.+.....+.   +.  .....+++++   -  ..+++-++...+.+|.++...-.....
T Consensus       577 fkll~~~~e~Dtk~~VL~~ls~lI~r~~e~---I~--P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~  651 (978)
T KOG1993|consen  577 FKLLKAVEECDTKTSVLNLLSTLIERVSEH---IA--PYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSF  651 (978)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHh---hh--HHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCc
Confidence            566654 55666777777777765322211   10  0122222222   1  223455677777888888766444444


Q ss_pred             hhhhchHHHHHHhhcCCChh---HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhcc
Q 012897          162 DQVRPALPALAQLVHSNDEE---VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG  238 (454)
Q Consensus       162 ~~~~~~l~~l~~ll~~~~~~---v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  238 (454)
                      ....-.+|++-...+-.+|+   ..+.+...-.....+.+.....+.  +++|.+...+....+ ....++.++....--
T Consensus       652 ~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~l~~~iE~ste-~L~t~l~Ii~sYilL  728 (978)
T KOG1993|consen  652 EFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLFPHLLYIIEQSTE-NLPTVLMIISSYILL  728 (978)
T ss_pred             cchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHHHHHHHHHHhhhh-hHHHHHHHHHHHHhh
Confidence            43344444444443322222   233333322222222222222222  456677766654432 233344444333221


Q ss_pred             CccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhh--cchhhHHHHHHH
Q 012897          239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN--AEFDIKKEAAWA  316 (454)
Q Consensus       239 ~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~a  316 (454)
                      .......-...|+.+.+..++.+- ..+-....+.++..+...++ ........++++.+..-+-.  +.|.+...-+.+
T Consensus       729 d~~~fl~~y~~~i~k~~~~~l~dv-r~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~v  806 (978)
T KOG1993|consen  729 DNTVFLNDYAFGIFKKLNDLLDDV-RNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLV  806 (978)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHH
Confidence            111111112235666677776655 44444555666666665544 44455567788888776643  367788888888


Q ss_pred             HHHhcCCCCH
Q 012897          317 ISNATSGGTH  326 (454)
Q Consensus       317 L~~l~~~~~~  326 (454)
                      ++.+...++.
T Consensus       807 vaRi~l~n~~  816 (978)
T KOG1993|consen  807 VARISLRNPS  816 (978)
T ss_pred             HHHHHhcChH
Confidence            8888776443

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=95.43  E-value=0.18  Score=40.68  Aligned_cols=147  Identities=10%  Similarity=0.053  Sum_probs=86.3

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 012897           39 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD  118 (454)
Q Consensus        39 ~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  118 (454)
                      ..++.|.++|+.+.++.+|.+++++|+.+-.-+|-..+.+....  +.-.  -.+.+......... ........    +
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~~~--~~~~~~~~~~~~l~-~~~~~~~~----e   80 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DSKS--SENSNDESTDISLP-MMGISPSS----E   80 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Cccc--cccccccchhhHHh-hccCCCch----H
Confidence            35788999999887699999999999999886665544322211  1000  01111112221111 11111112    2


Q ss_pred             HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 012897          119 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS  194 (454)
Q Consensus       119 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~  194 (454)
                      ...-...+..|++.+.+..-..-...++.++.++..............++|.++..+++.++..++..+.-|+.+.
T Consensus        81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            2222235777888885444344444566666666654444456777899999999999877788887776666554

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=95.39  E-value=1.8  Score=38.34  Aligned_cols=203  Identities=13%  Similarity=0.100  Sum_probs=131.5

Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH---HhcCChHHHHHHhchhh-hhhHHHHHHHHHHh
Q 012897           76 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV---LSQGALIPLLAQLNERA-KLSMLRNATWTLSN  151 (454)
Q Consensus        76 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~---~~~~~i~~l~~~l~~~~-~~~~~~~a~~~L~~  151 (454)
                      ..+.+.|.+..++..+..-+.+-+..++.+..++-...-..+...   +.. -.+.+-.++.... .+++.-.+...+..
T Consensus        73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t-~~e~~~~lv~~~~~~~~iaL~cg~mlrE  151 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLET-NPEILDNLVKGYENTPEIALTCGNMLRE  151 (342)
T ss_pred             HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHh-CHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence            345678999999999999888888888888888864332222111   111 1222333332222 24444444444444


Q ss_pred             hcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCc----HHHHHHhcCCCCCcchhh
Q 012897          152 FCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV----CPRLVELLGHPSPSVLIP  227 (454)
Q Consensus       152 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~----i~~L~~ll~~~~~~v~~~  227 (454)
                      ..++.........+..+.........++-++...|..+...+.......+..++..+.    .+.--.++.+++.-++..
T Consensus       152 cirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq  231 (342)
T KOG1566|consen  152 CIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ  231 (342)
T ss_pred             HHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence            4444333333334555666667777777788888888888877655545455554432    333556778899999999


Q ss_pred             HHHHHhHhhccCccc---hhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897          228 ALRTVGNIVTGDDFQ---TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  280 (454)
Q Consensus       228 a~~~L~~l~~~~~~~---~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~  280 (454)
                      +...++.+..+.+..   .+.+.+..-++.++.+|+.+ +..++-+|.....-...
T Consensus       232 s~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk-skniQ~eAFhvFKvfvA  286 (342)
T KOG1566|consen  232 SLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK-SKNIQLEAFHVFKVFVA  286 (342)
T ss_pred             HHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc-cccchHHHHHHHHHHhc
Confidence            999999998655422   33344456788999999999 89999999988877765

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=95.35  E-value=1.2  Score=38.70  Aligned_cols=201  Identities=16%  Similarity=0.180  Sum_probs=114.3

Q ss_pred             HHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhh
Q 012897           85 PIFVK-LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ  163 (454)
Q Consensus        85 ~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  163 (454)
                      +.|+. .-+..+++++...+.+|..++.+...+...     ++..+..+. ..++......+...+..+....+ ..+  
T Consensus         3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~-~~~~~~~~~~~~rLl~~lw~~~~-r~f--   73 (234)
T PF12530_consen    3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLV-EQGSLELRYVALRLLTLLWKAND-RHF--   73 (234)
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHH-cCCchhHHHHHHHHHHHHHHhCc-hHH--
Confidence            34444 334578999999999999998765222222     134444444 44445555556666666665432 111  


Q ss_pred             hhchHHHHHHh--hc--------CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc-CCCCCcchhhHHHHH
Q 012897          164 VRPALPALAQL--VH--------SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTV  232 (454)
Q Consensus       164 ~~~~l~~l~~l--l~--------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L  232 (454)
                        +.+..++..  ++        +...+.......++..+|...++.     ...+++.+..++ .+.++.++..++..|
T Consensus        74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~-----g~~ll~~ls~~L~~~~~~~~~alale~l  146 (234)
T PF12530_consen   74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH-----GVDLLPLLSGCLNQSCDEVAQALALEAL  146 (234)
T ss_pred             --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh-----HHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence              333333322  11        122344555556788888776652     235677888888 778888899999999


Q ss_pred             hHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcC--CHHHHHHHHhCCChHHHHHHhhhcch
Q 012897          233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG--NRDQIQAVIDAGLVGPLVNLLQNAEF  307 (454)
Q Consensus       233 ~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~  307 (454)
                      ..++...--...     .....+.+-+..+..+.+.+..+..+..+..+  +.+.. .-....++..+-++....+.
T Consensus       147 ~~Lc~~~vvd~~-----s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~-~~~~~~~l~~lW~~~~~~~~  217 (234)
T PF12530_consen  147 APLCEAEVVDFY-----SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEY-EELKRQILQLLWEYTSSSDV  217 (234)
T ss_pred             HHHHHHhhccHH-----HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhh-hHHHHHHHHHHHhhcccccc
Confidence            999943221111     34456666666665666666655555555442  12222 22334566666666665543

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=95.28  E-value=1.4  Score=41.20  Aligned_cols=274  Identities=17%  Similarity=0.170  Sum_probs=138.8

Q ss_pred             hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHH-HHHhhcCCCCCCCh
Q 012897           84 VPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATW-TLSNFCRGKPQPPF  161 (454)
Q Consensus        84 i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~-~L~~l~~~~~~~~~  161 (454)
                      +..++.-+.. ....+|..++.-|+.-|. ++.++..+...|....+++.+...++..+...+.. ++.-++.+......
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l  101 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL  101 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence            5666666663 457788888888888775 46689999999999999999955544434444444 44444554444444


Q ss_pred             hhhhchHHHHHHhhcCCCh-hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc---C------CCCCcchhhHHHH
Q 012897          162 DQVRPALPALAQLVHSNDE-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL---G------HPSPSVLIPALRT  231 (454)
Q Consensus       162 ~~~~~~l~~l~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll---~------~~~~~v~~~a~~~  231 (454)
                      .........+..++..... .+....-       ...........+ ..+..+...+   .      .....-+..|+.+
T Consensus       102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~-------~~~~~~lsk~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~  173 (361)
T PF07814_consen  102 LLDRDSLRLLLKLLKVDKSLDVPSDSD-------SSRKKNLSKVQQ-KSRSLCKELLSSGSSWKSPKPPELSPQTLALLA  173 (361)
T ss_pred             hhchhHHHHHHHHhccccccccccchh-------hhhhhhhhHHHH-HHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence            3455666777777761100 0000000       000000011111 1122222222   1      1223445556666


Q ss_pred             HhHhhc--------------cCccchhhhhccCChHHHHHhhcC----Cc-----------chhHHHHHHHHHHHHhcCC
Q 012897          232 VGNIVT--------------GDDFQTQCIITYGALPYLLGLLTH----SH-----------KKSIKKEACWTISNITAGN  282 (454)
Q Consensus       232 L~~l~~--------------~~~~~~~~~~~~~~l~~L~~~L~~----~~-----------~~~v~~~a~~~L~nl~~~~  282 (454)
                      +-.++.              ..+..++.+...|++..++.++..    ..           +...-..+..+|-+.+..+
T Consensus       174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~  253 (361)
T PF07814_consen  174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS  253 (361)
T ss_pred             HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence            666641              111234455566788888888752    10           1112334556666666544


Q ss_pred             HHHHHHHHh--CCChHHHHHH----hhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHH---hhc----cC---
Q 012897          283 RDQIQAVID--AGLVGPLVNL----LQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPL---CDL----FV---  346 (454)
Q Consensus       283 ~~~~~~l~~--~~~i~~L~~l----l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L---~~~----l~---  346 (454)
                      .++..+++.  .+.++.+...    ...........+++.+.|+.... +..+..+...++...+   ...    +.   
T Consensus       254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n-~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~  332 (361)
T PF07814_consen  254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNN-PSACEEFASPKLGQQLGLIVTSFFCVLSLPN  332 (361)
T ss_pred             ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCC-ccchHhhhhhHhccchHHHHHhhcccccccc
Confidence            444444442  2333333322    22234455678888888988764 3333333333222211   111    11   


Q ss_pred             ----CCCHHHHHHHHHHHHHHHHhh
Q 012897          347 ----CPDPRIVTVCLEGLENILKVG  367 (454)
Q Consensus       347 ----~~~~~v~~~al~~L~~l~~~~  367 (454)
                          ...-+....++++|.|+....
T Consensus       333 ~~~~~~~~D~~IL~Lg~LINL~E~s  357 (361)
T PF07814_consen  333 YVPEESSFDILILALGLLINLVEHS  357 (361)
T ss_pred             cccccccchHHHHHHHhHHHheeeC
Confidence                112345666777777776543

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=95.26  E-value=0.57  Score=44.69  Aligned_cols=223  Identities=10%  Similarity=0.044  Sum_probs=103.6

Q ss_pred             CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC----CCCChhhhhchHH
Q 012897           94 PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK----PQPPFDQVRPALP  169 (454)
Q Consensus        94 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~l~  169 (454)
                      +|+-+....++++..+..........+... .+..+....+...++..-.....+++.+.+..    +.........++|
T Consensus        42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P  120 (435)
T PF03378_consen   42 ENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP  120 (435)
T ss_dssp             C-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence            466677777777777655444443443221 22223333333445555555555555554432    2223345577889


Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhcCCCCCc---chhhHHHHHhHhhccCccchhh
Q 012897          170 ALAQLVHSNDEEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLGHPSPS---VLIPALRTVGNIVTGDDFQTQC  245 (454)
Q Consensus       170 ~l~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~---v~~~a~~~L~~l~~~~~~~~~~  245 (454)
                      .+..+|..+-.+..-++...++.+.+..+ ....    ......+-.++...-++   -.-...+.|..+....+.   .
T Consensus       121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p----~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~---~  193 (435)
T PF03378_consen  121 PFQEILQQDVQEFIPYVFQILAQLLELRPSSPLP----DAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPS---F  193 (435)
T ss_dssp             HHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S------TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGG---G
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc----HHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCch---h
Confidence            99999998888888888888888775544 1111    11112222222222222   223344555555543332   2


Q ss_pred             hhccCCh----HHHHHhhcCCcchhHHHHHHHHHHHHhcC-CHHHHHHHHhCCChHHHHHHhhh-cchhhHHHHHHHHHH
Q 012897          246 IITYGAL----PYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVGPLVNLLQN-AEFDIKKEAAWAISN  319 (454)
Q Consensus       246 ~~~~~~l----~~L~~~L~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~  319 (454)
                      +...+-+    ..+-+++.++ ..  -..+...|..+... ..+.....+ ..++..++.-+++ +.++..+.-+..++.
T Consensus       194 i~~~~~l~~iLgvFQkLi~sk-~~--D~~gF~LL~~iv~~~p~~~l~~yl-~~I~~lll~RLq~skT~kf~~~fv~F~~~  269 (435)
T PF03378_consen  194 IVANNQLEPILGVFQKLIASK-AN--DHYGFDLLESIVENLPPEALEPYL-KQIFTLLLTRLQSSKTEKFVKRFVVFLSL  269 (435)
T ss_dssp             ----S-CHHHHHHHHHHHT-T-TC--HHHHHHHHHHHHHHS-HHHHGGGH-HHHHHHHHHHHHHC--HHHHHHHHHHHHH
T ss_pred             hcchhhHHHHHHHHHHHHCCC-Cc--chHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHhhCCcHHHHHHHHHHHHH
Confidence            2333333    3344555555 22  24566677666653 233333333 2345555555554 355555555555555


Q ss_pred             hcCCCCHHH
Q 012897          320 ATSGGTHEQ  328 (454)
Q Consensus       320 l~~~~~~~~  328 (454)
                      ++....++.
T Consensus       270 ~~~~~g~~~  278 (435)
T PF03378_consen  270 FAIKYGPDF  278 (435)
T ss_dssp             HHHHH-HHH
T ss_pred             HHHHcCHHH
Confidence            544333333

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=95.23  E-value=0.031  Score=46.83  Aligned_cols=95  Identities=17%  Similarity=0.222  Sum_probs=70.4

Q ss_pred             HHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCC--------CChhHHHHHHHHHHHhcCCCchhhHHHH-hCCChH
Q 012897           15 EATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE--------DYPQLQFEAAWALTNIASGTSENTKVVI-DHGAVP   85 (454)
Q Consensus        15 ~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~--------~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~   85 (454)
                      ..+..|...+...+...++.+++.|++..|+..|..-        .+......++.||..+.. +......++ ..+++.
T Consensus        83 ~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n-~~~G~~~v~~~~~~v~  161 (187)
T PF06371_consen   83 KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN-TKYGLEAVLSHPDSVN  161 (187)
T ss_dssp             HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS-SHHHHHHHHCSSSHHH
T ss_pred             HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc-cHHHHHHHHcCcHHHH
Confidence            4555565556554344578888999999999877642        225788999999999998 445555555 468999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhh
Q 012897           86 IFVKLLASPSDDVREQAVWALGNVA  110 (454)
Q Consensus        86 ~L~~lL~~~~~~v~~~a~~~L~~l~  110 (454)
                      .++..|.+++..++..++.+|..+|
T Consensus       162 ~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  162 LIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             HHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999887

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=95.22  E-value=3.2  Score=40.20  Aligned_cols=108  Identities=14%  Similarity=0.077  Sum_probs=77.9

Q ss_pred             cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 012897           38 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR  117 (454)
Q Consensus        38 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  117 (454)
                      .|.+..+++.+.+++ ..+|..++++|..++. .-.-.+..+-.|.+..|.+-+-+..+.+|..|+.+|+.+-.....-.
T Consensus        90 ~~~~~h~lRg~eskd-k~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee  167 (885)
T COG5218          90 AGTFYHLLRGTESKD-KKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE  167 (885)
T ss_pred             HHHHHHHHhcccCcc-hhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence            356777777888888 8999999999999887 33333444556788888888888889999999999998863322211


Q ss_pred             HHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCC
Q 012897          118 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  155 (454)
Q Consensus       118 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  155 (454)
                      ..     ....++..++.+++.+|++.|+   .++.-+
T Consensus       168 n~-----~~n~l~~~vqnDPS~EVRr~al---lni~vd  197 (885)
T COG5218         168 NR-----IVNLLKDIVQNDPSDEVRRLAL---LNISVD  197 (885)
T ss_pred             HH-----HHHHHHHHHhcCcHHHHHHHHH---HHeeeC
Confidence            12     2346777777889999999765   455544

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=95.16  E-value=0.63  Score=38.30  Aligned_cols=142  Identities=18%  Similarity=0.148  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHhcCC-Cch----hhHHHHh------CCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc
Q 012897           56 LQFEAAWALTNIASG-TSE----NTKVVID------HGAVPIFV-KLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQ  123 (454)
Q Consensus        56 v~~~a~~~L~~l~~~-~~~----~~~~~~~------~g~i~~L~-~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  123 (454)
                      +|..|+.+|..++.. ++.    ....++-      .+.-+.|+ -++.++++.+|..|+.++..+..+...+-....+.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            567777777777763 111    1111111      12333444 45678999999999999999886543322221111


Q ss_pred             C-------------------ChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC--hhhhhchHHHHHHhhcCCChhH
Q 012897          124 G-------------------ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP--FDQVRPALPALAQLVHSNDEEV  182 (454)
Q Consensus       124 ~-------------------~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~l~~l~~ll~~~~~~v  182 (454)
                      .                   .-..|+..+..+.+..+....+.++..+....|..+  ......++..+..++.+.|+++
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v  161 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV  161 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence            1                   123345555556677888899999999998864433  3445677777888888999999


Q ss_pred             HHHHHHHHHHhccCC
Q 012897          183 LTDACWALSYLSDGT  197 (454)
Q Consensus       183 ~~~a~~~L~~l~~~~  197 (454)
                      +..++.+++.+....
T Consensus       162 ~v~~l~~~~~l~s~~  176 (182)
T PF13251_consen  162 RVAALSCLGALLSVQ  176 (182)
T ss_pred             HHHHHHHHHHHHcCC
Confidence            999999998876543

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.13  E-value=6.9  Score=43.51  Aligned_cols=274  Identities=15%  Similarity=0.139  Sum_probs=142.1

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC-CCCChh
Q 012897           84 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFD  162 (454)
Q Consensus        84 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~  162 (454)
                      ...++..+..+++..+-.+..+++.++..-+... .  -....+..+..+.+..++-.|.-...+++.+-++. ......
T Consensus       878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~-f--~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q  954 (2067)
T KOG1822|consen  878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSAP-F--VASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ  954 (2067)
T ss_pred             HHHHhhhhccCChHHHHHHHHHHHHHHHhccccc-h--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence            4555566667888888888888888874322110 0  11124555666656666777777777888887776 334444


Q ss_pred             hhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CC--CcchhhHHHHHh-----
Q 012897          163 QVRPALPALAQLVHSN-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PS--PSVLIPALRTVG-----  233 (454)
Q Consensus       163 ~~~~~l~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~--~~v~~~a~~~L~-----  233 (454)
                      .....+..+..+-+++ .|.|+.+++.++..+...........++ ..+..+..++-. +.  .++...--+++.     
T Consensus       955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen  955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred             hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence            5566677777776654 5699999999999988665444333333 334444444433 21  222222222222     


Q ss_pred             -Hhh-------ccCcc-chhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhh
Q 012897          234 -NIV-------TGDDF-QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN  304 (454)
Q Consensus       234 -~l~-------~~~~~-~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~  304 (454)
                       ++.       ..+.. ....-.....+....-++.++ ++.++..+..++.++-...+.....   .-+++.++.++.+
T Consensus      1034 ~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n~---~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVNL---DSLVLQLCSLLSS 1109 (2067)
T ss_pred             HHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhccH---HHHHHHHHHHhcc
Confidence             222       11111 011111222233334444555 8889999999998876543332111   1245556665554


Q ss_pred             cchhhHHHHHHHHHHhcCCCCHHHH---H--------------HHH-HcCCcHHHhhccCC-CCHHHHHHHHHHHHHHHH
Q 012897          305 AEFDIKKEAAWAISNATSGGTHEQI---K--------------YLV-REGCIKPLCDLFVC-PDPRIVTVCLEGLENILK  365 (454)
Q Consensus       305 ~~~~v~~~a~~aL~~l~~~~~~~~~---~--------------~l~-~~~~i~~L~~~l~~-~~~~v~~~al~~L~~l~~  365 (454)
                      .-.-.|......+..+......+.+   .              ... +.|+=..+..++.. .|.++.......+.+++.
T Consensus      1110 ~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~~~~ 1189 (2067)
T KOG1822|consen 1110 SYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSRMLN 1189 (2067)
T ss_pred             hhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence            4333333333334333332111100   0              001 23334445555553 345566666777766543

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=95.09  E-value=2.1  Score=37.26  Aligned_cols=141  Identities=23%  Similarity=0.220  Sum_probs=93.1

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 012897           41 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV  120 (454)
Q Consensus        41 l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  120 (454)
                      ++.|+.-+....++..+...++.|..++........     -++..+..+.+.+....+..+.+.+..+...++...   
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence            455655455554599999999999999984412222     235667777777777777778888888875554321   


Q ss_pred             HhcCChHHHHHHh---------chhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhh-cCCChhHHHHHHHHH
Q 012897          121 LSQGALIPLLAQL---------NERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV-HSNDEEVLTDACWAL  190 (454)
Q Consensus       121 ~~~~~i~~l~~~l---------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~v~~~a~~~L  190 (454)
                         +.+..++..+         ..+...+........+..+|...+.    ....+++.+..++ ++.++.++..++.++
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l  146 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL  146 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence               1233333331         0122334445555678888877655    4456788888888 788899999999999


Q ss_pred             HHhccC
Q 012897          191 SYLSDG  196 (454)
Q Consensus       191 ~~l~~~  196 (454)
                      ..++..
T Consensus       147 ~~Lc~~  152 (234)
T PF12530_consen  147 APLCEA  152 (234)
T ss_pred             HHHHHH
Confidence            999843

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=94.99  E-value=4.4  Score=40.50  Aligned_cols=282  Identities=15%  Similarity=0.078  Sum_probs=155.6

Q ss_pred             CCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhC--CChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHH
Q 012897           81 HGAVPIFVKLLAS--------PSDDVREQAVWALGNVAG--DSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS  150 (454)
Q Consensus        81 ~g~i~~L~~lL~~--------~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~  150 (454)
                      +|+++.+...|..        .++.-.+.|++.++++..  ..+....-+++.-+++.++..+ +++..-++..+|..+.
T Consensus       407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f-~s~ygfL~Srace~is  485 (970)
T COG5656         407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAF-RSNYGFLKSRACEFIS  485 (970)
T ss_pred             hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhh-cCcccchHHHHHHHHH
Confidence            5889999998832        234556678888888764  2222222333333344444444 5566678889999999


Q ss_pred             hhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc---CCCCCcchhh
Q 012897          151 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL---GHPSPSVLIP  227 (454)
Q Consensus       151 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll---~~~~~~v~~~  227 (454)
                      .+..+  -..............+++.+++-.++..|+.++..+..+.  +....+...+.+.+-++|   +.-+-++...
T Consensus       486 ~~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~--q~h~k~sahVp~tmekLLsLSn~feiD~LS~  561 (970)
T COG5656         486 TIEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE--QSHEKFSAHVPETMEKLLSLSNTFEIDPLSM  561 (970)
T ss_pred             HHHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch--hhhHHHHhhhhHHHHHHHHhcccccchHHHH
Confidence            98544  3333444566777788888888889999999998887664  233344444443333333   3333333333


Q ss_pred             HHHH-HhHhhccCccchhhhhc---cCChHHHHHhhcCCc-----chhHHHHHHHHHHHHhc------CCHHHHHHHHhC
Q 012897          228 ALRT-VGNIVTGDDFQTQCIIT---YGALPYLLGLLTHSH-----KKSIKKEACWTISNITA------GNRDQIQAVIDA  292 (454)
Q Consensus       228 a~~~-L~~l~~~~~~~~~~~~~---~~~l~~L~~~L~~~~-----~~~v~~~a~~~L~nl~~------~~~~~~~~l~~~  292 (454)
                      ++.. +..++..-......+..   ..+++....++..++     ..+-+-.|.+.|..+..      ..+...+.+. .
T Consensus       562 vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le-~  640 (970)
T COG5656         562 VMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLE-V  640 (970)
T ss_pred             HHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHH-H
Confidence            3322 22222211111111111   133344444444331     11223345555544432      2344443333 3


Q ss_pred             CChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCH-HHHHHHHHHHHHHHHhhhhhh
Q 012897          293 GLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDP-RIVTVCLEGLENILKVGEAEK  371 (454)
Q Consensus       293 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~-~v~~~al~~L~~l~~~~~~~~  371 (454)
                      ...|..--.+++.-.++-.+|+..+-+.... ..+..+  +--|+.+.+.+++.+... .-...+..++.|++.++.++-
T Consensus       641 slypvi~Filkn~i~dfy~Ea~dildg~tf~-skeI~p--imwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef  717 (970)
T COG5656         641 SLYPVISFILKNEISDFYQEALDILDGYTFM-SKEIEP--IMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEF  717 (970)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhhhHH-HHHhhh--hhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCcccc
Confidence            3455554555666677777888887766542 112111  122567778888877664 556677889999999886543

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=94.96  E-value=2.1  Score=38.04  Aligned_cols=203  Identities=12%  Similarity=0.088  Sum_probs=137.0

Q ss_pred             HHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh---hhh---hchHHHHHHhhcCCChhHHHHHHHHHH
Q 012897          118 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF---DQV---RPALPALAQLVHSNDEEVLTDACWALS  191 (454)
Q Consensus       118 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~---~~~---~~~l~~l~~ll~~~~~~v~~~a~~~L~  191 (454)
                      ..+...|.+..+++.+ ...+-+.+..++.+..++.+..-....   .+.   ...+..++.--.. .+++..++...+.
T Consensus        73 qef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr  150 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR  150 (342)
T ss_pred             HHHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence            4456677888888888 666778888888888888776522221   222   3344444444221 3555555555555


Q ss_pred             HhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCC----hHHHHHhhcCCcchhH
Q 012897          192 YLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGA----LPYLLGLLTHSHKKSI  267 (454)
Q Consensus       192 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~----l~~L~~~L~~~~~~~v  267 (454)
                      ...++ ....+.+..+.-+.....+++.+.-++...|..+...+..........++....    .+..-.++.+. +--+
T Consensus       151 Ecirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyvt  228 (342)
T KOG1566|consen  151 ECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYVT  228 (342)
T ss_pred             HHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-ceeh
Confidence            55544 345566777788888888888888888888888888887654433333433222    34466677777 8889


Q ss_pred             HHHHHHHHHHHhcC--CHHH-HHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCC
Q 012897          268 KKEACWTISNITAG--NRDQ-IQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG  324 (454)
Q Consensus       268 ~~~a~~~L~nl~~~--~~~~-~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  324 (454)
                      +..+...++.+..+  +... .+++.+..-+..++.+|.++...++.+|.....-+..+.
T Consensus       229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp  288 (342)
T KOG1566|consen  229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP  288 (342)
T ss_pred             HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence            99999999998864  2222 233334567889999999999999999999888777654

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=94.96  E-value=0.15  Score=34.70  Aligned_cols=67  Identities=18%  Similarity=0.131  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 012897           13 QLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG   82 (454)
Q Consensus        13 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g   82 (454)
                      .+.|++++.++.+.  +.-...+.+.++++.++++..+.+...+|-.+..+|+-++. +.+..+.+.+.|
T Consensus         4 lKaaLWaighIgss--~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSS--PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcC--hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence            57899999999887  45556666779999999999877668999999999999998 777777766655

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.93  E-value=4.8  Score=40.68  Aligned_cols=390  Identities=13%  Similarity=0.155  Sum_probs=193.0

Q ss_pred             CHHHHHHHHHHHHHHhccC-C--CCcHHHHHHc--CCH-HHHHHhhcCCCChhHHHHHHHHHHHhcC-CCchhhHHHHhC
Q 012897            9 DSSLQLEATTQFRKLLSIE-R--SPPIEEVIQS--GVV-PRFVEFLMREDYPQLQFEAAWALTNIAS-GTSENTKVVIDH   81 (454)
Q Consensus         9 d~~~~~~a~~~L~~l~~~~-~--~~~~~~~~~~--~~l-~~L~~lL~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~   81 (454)
                      |+.+|..|+.++.+.++.+ .  .+....+.+.  ..+ ..++.++-+.. ..++..-..+|+-+.. +.|+....    
T Consensus        52 d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s~-~~iQ~qlseal~~Ig~~DFP~kWpt----  126 (960)
T KOG1992|consen   52 DPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSSP-FNIQKQLSEALSLIGKRDFPDKWPT----  126 (960)
T ss_pred             ChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHhccccchhhHH----
Confidence            7899999999999998732 1  1111122221  122 23455666666 6899999999999886 33444433    


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhh-CCChhhHHH------HHhcC-ChHHHHHHhch--------hhhhh-----
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVA-GDSPRCRDL------VLSQG-ALIPLLAQLNE--------RAKLS-----  140 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~-~~~~~~~~~------~~~~~-~i~~l~~~l~~--------~~~~~-----  140 (454)
                       .++.|+.-+++.+..+....+.+-..+- +..+.+|..      ....+ .-.++..++..        ..+..     
T Consensus       127 -Ll~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~l  205 (960)
T KOG1992|consen  127 -LLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNIL  205 (960)
T ss_pred             -HHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHH
Confidence             4677777777766555554444444343 222222211      11111 11233333321        11122     


Q ss_pred             --HHHHHHHHHHhhcCCC-CCCChhhhhchHHHHHHhhcCCC-------------hhHHHHHHHHHHHhccCChHHHHHH
Q 012897          141 --MLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSND-------------EEVLTDACWALSYLSDGTNDKIQAV  204 (454)
Q Consensus       141 --~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~~-------------~~v~~~a~~~L~~l~~~~~~~~~~~  204 (454)
                        +..-.+.....|...+ +.--.......++...+++..++             ..++...|..+.-.+...++..+.+
T Consensus       206 f~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~f  285 (960)
T KOG1992|consen  206 FGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPF  285 (960)
T ss_pred             HHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhh
Confidence              2222333444444433 22222234566777777776332             2345566666666666655555544


Q ss_pred             HHhCcHHHHHHhcCCCCCc-----chhhHHHHHhHhhccCccchh---------------------------hhhccCCh
Q 012897          205 IEAGVCPRLVELLGHPSPS-----VLIPALRTVGNIVTGDDFQTQ---------------------------CIITYGAL  252 (454)
Q Consensus       205 ~~~~~i~~L~~ll~~~~~~-----v~~~a~~~L~~l~~~~~~~~~---------------------------~~~~~~~l  252 (454)
                      +. +++.....++.+..++     +...|+..|.++++... +..                           .+.+..-+
T Consensus       286 l~-~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~-y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pl  363 (960)
T KOG1992|consen  286 LP-DFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPH-YAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPL  363 (960)
T ss_pred             HH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhh-hHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHH
Confidence            44 4555555566543332     34456666666664221 211                           22333344


Q ss_pred             HHHHHhhcCCcchhH-HHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhh---hcchhhHHHHHHHHHHhcCCCCHHH
Q 012897          253 PYLLGLLTHSHKKSI-KKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQ---NAEFDIKKEAAWAISNATSGGTHEQ  328 (454)
Q Consensus       253 ~~L~~~L~~~~~~~v-~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~---~~~~~v~~~a~~aL~~l~~~~~~~~  328 (454)
                      ..+-.-|+.. +-+. |+.|+-.+.-++...+.....++.. .+..+++-..   +.++.-+..+......++..+....
T Consensus       364 eYiRRDlEGs-DvdTRRR~a~dlvrgL~~~fe~~vt~v~~~-~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~  441 (960)
T KOG1992|consen  364 EYIRRDLEGS-DVDTRRRAAIDLVRGLCKNFEGQVTGVFSS-EVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAK  441 (960)
T ss_pred             HHHHHhcccC-CcchhHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhh
Confidence            5555555544 4444 4556677777776544433333321 2222332222   2355566667777776666432110


Q ss_pred             -----------HHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHH
Q 012897          329 -----------IKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIE  397 (454)
Q Consensus       329 -----------~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~  397 (454)
                                 ...+.....++.|..-=-...|-++..+++-+..+=+   .          .+  ...+  ...++.+.
T Consensus       442 ~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~---q----------l~--~~~l--m~~~p~li  504 (960)
T KOG1992|consen  442 HGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRN---Q----------LG--KEHL--MALLPRLI  504 (960)
T ss_pred             cceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecc---c----------CC--hHHH--HHHHHHHH
Confidence                       0011111111111110012333344333322221110   0          00  1111  23467778


Q ss_pred             HHhcCCCHHHHHHHHHHHHHhcCcCCCc
Q 012897          398 NLQSHDNNEIYEKAVKILETYWLEEDDE  425 (454)
Q Consensus       398 ~l~~~~~~~v~~~a~~~l~~~~~~~~~~  425 (454)
                      +.+..+..-|..+|...+++++.-++++
T Consensus       505 ~~L~a~s~vvhsYAA~aiEkil~vre~~  532 (960)
T KOG1992|consen  505 RFLEAESRVVHSYAAIAIEKLLTVRENS  532 (960)
T ss_pred             HhccCcchHHHHHHHHHHHhccccccCc
Confidence            8889999999999999999999887763

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.93  E-value=0.63  Score=45.68  Aligned_cols=147  Identities=17%  Similarity=0.147  Sum_probs=100.8

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcC-CCc----hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh
Q 012897           40 VVPRFVEFLMREDYPQLQFEAAWALTNIAS-GTS----ENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP  114 (454)
Q Consensus        40 ~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~-~~~----~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~  114 (454)
                      .=|.|.+-|+-.+ ..+|..|+..+.++.- .++    +..+.+++.. ...+.++|.++.+.+|..|+..+..+.+.  
T Consensus       175 ~~p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQ-f~~l~~LL~d~~p~VRS~a~~gv~k~~s~--  250 (1005)
T KOG1949|consen  175 YKPILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQ-FEELYSLLEDPYPMVRSTAILGVCKITSK--  250 (1005)
T ss_pred             HhHHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHH-HHHHHHHhcCCCchHHHHHHHHHHHHHHH--
Confidence            3445666778888 7999999999999875 222    3345555543 67889999999999999998887776531  


Q ss_pred             hhHHHHHhcCChH----HHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHH
Q 012897          115 RCRDLVLSQGALI----PLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWAL  190 (454)
Q Consensus       115 ~~~~~~~~~~~i~----~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L  190 (454)
                       + ..++-..++.    .+..-+..+...+|+......|..+..++  ........++|.+-..+.+....||.++...|
T Consensus       251 -f-We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~l  326 (1005)
T KOG1949|consen  251 -F-WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDML  326 (1005)
T ss_pred             -H-HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHH
Confidence             1 1122222222    23333334556688888888888888764  23334456778888888888999999888888


Q ss_pred             HHhc
Q 012897          191 SYLS  194 (454)
Q Consensus       191 ~~l~  194 (454)
                      ..+-
T Consensus       327 l~ik  330 (1005)
T KOG1949|consen  327 LKIK  330 (1005)
T ss_pred             HHHH
Confidence            7664

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=94.83  E-value=0.25  Score=38.67  Aligned_cols=93  Identities=11%  Similarity=0.010  Sum_probs=71.0

Q ss_pred             ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCC------CCHHHHHHHHHHHHHHHHhh
Q 012897          294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC------PDPRIVTVCLEGLENILKVG  367 (454)
Q Consensus       294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~------~~~~v~~~al~~L~~l~~~~  367 (454)
                      .+..+..-+.++++.++..|+..|-.+..++.......+.+.+++..|+.+++.      .++.|+..++..+.......
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  118 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL  118 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            455677778889999999999999999998888888888888999999999863      56789999999988887654


Q ss_pred             hhhhhccCCcccccHHHHHHHHhccH
Q 012897          368 EAEKNMGTATADVNQYAQLVEEAEGL  393 (454)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~l~~~g~~  393 (454)
                      ....       ...+....++..|.+
T Consensus       119 ~~~p-------~~~~~Y~~Lk~~G~i  137 (139)
T cd03567         119 PHEP-------KIKEAYDMLKKQGII  137 (139)
T ss_pred             cccc-------hHHHHHHHHHHCCCc
Confidence            4322       233345556656644

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=94.82  E-value=0.25  Score=47.13  Aligned_cols=152  Identities=22%  Similarity=0.321  Sum_probs=98.5

Q ss_pred             HhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC
Q 012897           46 EFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL-LASPSDDVREQAVWALGNVAGDSPRCRDLVLSQG  124 (454)
Q Consensus        46 ~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  124 (454)
                      +++.+.+ +-+|...+..+..--.+..       +.|++..++.. .++.++++|+.|+.+|+-+|.+++.         
T Consensus       523 ell~d~d-s~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------  585 (926)
T COG5116         523 ELLYDKD-SILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------  585 (926)
T ss_pred             HHhcCch-HHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------
Confidence            3444444 5555555444433222111       23567777776 6678899999999999998866543         


Q ss_pred             ChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHH
Q 012897          125 ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAV  204 (454)
Q Consensus       125 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  204 (454)
                      .+...+++|.++.+.-++...+.+|.-.|.+...      .-++..|-.+..+.++-+|..|+-+++-+.....+....-
T Consensus       586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~  659 (926)
T COG5116         586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN  659 (926)
T ss_pred             hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh
Confidence            4667788887777888999888899888876421      2345566677788888899999988887764433322222


Q ss_pred             HHhCcHHHHHHhcCCCC
Q 012897          205 IEAGVCPRLVELLGHPS  221 (454)
Q Consensus       205 ~~~~~i~~L~~ll~~~~  221 (454)
                      +. ++...+.+.+.+..
T Consensus       660 v~-~I~k~f~~vI~~Kh  675 (926)
T COG5116         660 VK-RIIKKFNRVIVDKH  675 (926)
T ss_pred             HH-HHHHHHHHHHhhhh
Confidence            22 45556666665443

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=94.76  E-value=5.1  Score=41.34  Aligned_cols=216  Identities=18%  Similarity=0.195  Sum_probs=124.8

Q ss_pred             HHHcCCHHHHHHhhcCCCC----hhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhC----CCC----HHHHHHH
Q 012897           35 VIQSGVVPRFVEFLMREDY----PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA----SPS----DDVREQA  102 (454)
Q Consensus        35 ~~~~~~l~~L~~lL~~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~----~~~----~~v~~~a  102 (454)
                      +.+.|++..|++++.+-.+    ..+....+..|...+. .+.+|+.+++.|+++.|+..+.    .+.    ..+.+..
T Consensus       113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L  191 (802)
T PF13764_consen  113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL  191 (802)
T ss_pred             hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence            3456888888888876431    3455556666666666 7999999999999999999774    333    6777777


Q ss_pred             HHHHHHhhCCChhhHHHH----H--------hcCChHHHHHHhchh---hhhhHHHHHHHHHHhhcCCCCCCChhhhhch
Q 012897          103 VWALGNVAGDSPRCRDLV----L--------SQGALIPLLAQLNER---AKLSMLRNATWTLSNFCRGKPQPPFDQVRPA  167 (454)
Q Consensus       103 ~~~L~~l~~~~~~~~~~~----~--------~~~~i~~l~~~l~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  167 (454)
                      +.++..+...........    .        ....+..+++.+...   .++.+....+.+|..|+.............+
T Consensus       192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F  271 (802)
T PF13764_consen  192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHF  271 (802)
T ss_pred             HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHH
Confidence            777776653222110000    0        111255666666432   3578888999999999987533222222222


Q ss_pred             HHHHHHhhc-----CCChhHHHHHHHHHHHhccC------ChHHHHHHHHhCcHHHHHHhcCCCCCc-------------
Q 012897          168 LPALAQLVH-----SNDEEVLTDACWALSYLSDG------TNDKIQAVIEAGVCPRLVELLGHPSPS-------------  223 (454)
Q Consensus       168 l~~l~~ll~-----~~~~~v~~~a~~~L~~l~~~------~~~~~~~~~~~~~i~~L~~ll~~~~~~-------------  223 (454)
                      -|.+ ++=.     +.+..   ..+.+++.++..      .....+.+++.|++...+..+...-|.             
T Consensus       272 ~p~l-~f~~~D~~~~~~~~---~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l  347 (802)
T PF13764_consen  272 KPYL-DFDKFDEEHSPDEQ---FKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFL  347 (802)
T ss_pred             HHhc-ChhhcccccCchHH---HHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHh
Confidence            2222 2111     11222   234555555432      134556688889998888887543222             


Q ss_pred             ---chhhHHHHHhHhhccCccchhhhhccCChHHHH
Q 012897          224 ---VLIPALRTVGNIVTGDDFQTQCIITYGALPYLL  256 (454)
Q Consensus       224 ---v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  256 (454)
                         -...++..|.-++.+.... +..+..++++.+-
T Consensus       348 ~~psLp~iL~lL~GLa~gh~~t-Q~~~~~~~l~~lH  382 (802)
T PF13764_consen  348 SRPSLPYILRLLRGLARGHEPT-QLLIAEQLLPLLH  382 (802)
T ss_pred             cCCcHHHHHHHHHHHHhcCHHH-HHHHHhhHHHHHH
Confidence               2234667777777665432 3345555554333

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=94.75  E-value=2.2  Score=39.85  Aligned_cols=214  Identities=12%  Similarity=0.132  Sum_probs=111.9

Q ss_pred             hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC-----CcchhhHHHHHhHhhccCccchhhhhccCChHHH
Q 012897          181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS-----PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYL  255 (454)
Q Consensus       181 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L  255 (454)
                      +++..++..+...+....+....++. ..+..+.++|..-.     ..+...++..|+.++... .....+...+.+..+
T Consensus       111 kvK~~i~~~~~ly~~kY~e~f~~~l~-~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~-~~~~lf~~~~~L~~I  188 (370)
T PF08506_consen  111 KVKAWICENLNLYAEKYEEEFEPFLP-TFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESP-HHKNLFENKPHLQQI  188 (370)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSH-HHHTTT-SHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcch-hHHHHhCCHHHHHHH
Confidence            45666677666666554444443333 45555666664422     234455677777665432 121111111122211


Q ss_pred             -----HHh----------------------hcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhh---hc
Q 012897          256 -----LGL----------------------LTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQ---NA  305 (454)
Q Consensus       256 -----~~~----------------------L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~---~~  305 (454)
                           ++.                      +.......-|..|+..+..++...+.....++. +.+..++.-..   ..
T Consensus       189 ie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~  267 (370)
T PF08506_consen  189 IEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSN  267 (370)
T ss_dssp             HHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT
T ss_pred             HHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCcc
Confidence                 222                      222212345677888888888654443333321 12332322211   23


Q ss_pred             chhhHHHHHHHHHHhcCCCCH-----------HHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcc
Q 012897          306 EFDIKKEAAWAISNATSGGTH-----------EQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMG  374 (454)
Q Consensus       306 ~~~v~~~a~~aL~~l~~~~~~-----------~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~  374 (454)
                      ++.-+..|+..++.++..+..           -....+....+++-|. --.+..|-++..|++.+..+-..-+.     
T Consensus       268 ~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~-----  341 (370)
T PF08506_consen  268 NWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK-----  341 (370)
T ss_dssp             -HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H-----
T ss_pred             cHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH-----
Confidence            678888999999999886521           0234555666777776 22245677787788777776443221     


Q ss_pred             CCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHH
Q 012897          375 TATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKIL  415 (454)
Q Consensus       375 ~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l  415 (454)
                                ..+  .+.++.+.+.+.+++.-|+.+|...|
T Consensus       342 ----------~~l--~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  342 ----------EQL--LQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             ----------HHH--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             ----------HHH--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence                      222  34578888899999999999988754

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=94.74  E-value=2.8  Score=38.62  Aligned_cols=157  Identities=18%  Similarity=0.167  Sum_probs=110.2

Q ss_pred             HHHHHHhcCCCCCcchhhHHHHHhHhhc-cCccchhhhhcc-C-ChHHHHHhhcCCc----c--------hhHHHHHHHH
Q 012897          210 CPRLVELLGHPSPSVLIPALRTVGNIVT-GDDFQTQCIITY-G-ALPYLLGLLTHSH----K--------KSIKKEACWT  274 (454)
Q Consensus       210 i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~-~-~l~~L~~~L~~~~----~--------~~v~~~a~~~  274 (454)
                      +..+...|......+...+++.|..++. ........+... . -.+.+..++....    .        +.+|......
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            6777888888888888899999999998 444445545432 1 2234444542210    1        2788888777


Q ss_pred             HHHHhc-CCHHHHHHHH-hCCChHHHHHHhhhcchhhHHHHHHHHHHh-cCCC--CHHHHHHHHHcCCcHHHhhccCCCC
Q 012897          275 ISNITA-GNRDQIQAVI-DAGLVGPLVNLLQNAEFDIKKEAAWAISNA-TSGG--THEQIKYLVREGCIKPLCDLFVCPD  349 (454)
Q Consensus       275 L~nl~~-~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l-~~~~--~~~~~~~l~~~~~i~~L~~~l~~~~  349 (454)
                      +..+.. +++..+..++ +.+.+..+.+-+..+++++....+.++..- ....  .......+.+...+..|..+....+
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~  217 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG  217 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence            666655 6777777777 566788888888888899999999999854 3322  2233344556678899999888877


Q ss_pred             H----HHHHHHHHHHHHHHHh
Q 012897          350 P----RIVTVCLEGLENILKV  366 (454)
Q Consensus       350 ~----~v~~~al~~L~~l~~~  366 (454)
                      +    .+...+-..|..++..
T Consensus       218 ~~~~~~~~~~vh~fL~~lcT~  238 (330)
T PF11707_consen  218 EDEKSSVADLVHEFLLALCTD  238 (330)
T ss_pred             CcccchHHHHHHHHHHHHhcC
Confidence            7    7888888888888754

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=94.73  E-value=2.2  Score=47.90  Aligned_cols=278  Identities=9%  Similarity=0.062  Sum_probs=150.0

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCC---hhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhh
Q 012897           87 FVKLLASPSDDVREQAVWALGNVAGDS---PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ  163 (454)
Q Consensus        87 L~~lL~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  163 (454)
                      ++..-.+++..++..|+..|..++..-   .+....-.....+.++..++....+.++++.++.++.++.......-..-
T Consensus      1142 f~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSG 1221 (1780)
T PLN03076       1142 FVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSG 1221 (1780)
T ss_pred             HHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcC
Confidence            333334456778888888888877311   11111122334577788777677788999999999999876542111112


Q ss_pred             hhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHH----HHHHhCcHHHHHHhcCCC-CCcchhhHHHHHhHhhcc
Q 012897          164 VRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQ----AVIEAGVCPRLVELLGHP-SPSVLIPALRTVGNIVTG  238 (454)
Q Consensus       164 ~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~----~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~  238 (454)
                      ...++..+.......++.+...+..++..++...-....    ..+ ..++..+..+.... +..+-..|+..|++++..
T Consensus      1222 WktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F-~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076       1222 WKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF-TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred             cHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH-HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence            233444444444466788888888888776643111000    000 13344444444333 356666777777655211


Q ss_pred             C----c-----------------------cchhhhhc-----cCChHHH---HHhhcCCcchhHHHHHHHHHHHHhc---
Q 012897          239 D----D-----------------------FQTQCIIT-----YGALPYL---LGLLTHSHKKSIKKEACWTISNITA---  280 (454)
Q Consensus       239 ~----~-----------------------~~~~~~~~-----~~~l~~L---~~~L~~~~~~~v~~~a~~~L~nl~~---  280 (454)
                      -    .                       .....+.+     ...++.|   ..+..++ .++||..|+.+|-.+..   
T Consensus      1301 La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG 1379 (1780)
T PLN03076       1301 LAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHG 1379 (1780)
T ss_pred             HHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhh
Confidence            0    0                       00000000     1123333   3334555 88999999999877764   


Q ss_pred             --CCHHHHHHHHhCCChHHHHHHhhhc-----------------------chhhHHHHHHHHHHhcCCCCHHHHHHHH--
Q 012897          281 --GNRDQIQAVIDAGLVGPLVNLLQNA-----------------------EFDIKKEAAWAISNATSGGTHEQIKYLV--  333 (454)
Q Consensus       281 --~~~~~~~~l~~~~~i~~L~~ll~~~-----------------------~~~v~~~a~~aL~~l~~~~~~~~~~~l~--  333 (454)
                        -+++.+..+.. +++-+++..++..                       +..+...+..+|..+..--. .+...+.  
T Consensus      1380 ~~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft-~fFd~L~~~ 1457 (1780)
T PLN03076       1380 HLFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFV-KFYPTVNPL 1457 (1780)
T ss_pred             ccCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence              13444444443 4555555555321                       00123334444444433111 1111111  


Q ss_pred             HcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhh
Q 012897          334 REGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGE  368 (454)
Q Consensus       334 ~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~  368 (454)
                      -.+++..|..++..++..+......||.+++....
T Consensus      1458 L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng 1492 (1780)
T PLN03076       1458 LKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAG 1492 (1780)
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhh
Confidence            13567777778888888999999999999986544

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=94.68  E-value=0.78  Score=45.30  Aligned_cols=208  Identities=14%  Similarity=0.104  Sum_probs=119.7

Q ss_pred             HHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC
Q 012897          142 LRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS  221 (454)
Q Consensus       142 ~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~  221 (454)
                      +..-+..|..+...  .........++|.++..+.+  ...+-..+-.+..++...+   ...+...+++.|...++..+
T Consensus       290 Ks~Flk~Ls~~ip~--fp~rv~~~kiLP~L~~el~n--~~~vp~~LP~v~~i~~~~s---~~~~~~~~~p~l~pi~~~~~  362 (700)
T KOG2137|consen  290 KSSFLKGLSKLIPT--FPARVLFQKILPTLVAELVN--TKMVPIVLPLVLLIAEGLS---QNEFGPKMLPALKPIYSASD  362 (700)
T ss_pred             HHHHHHHHHHhhcc--CCHHHHHHhhhhHHHHHhcc--ccccccccchhhhhhhccc---hhhhhhhhhHHHHHHhccCC
Confidence            33334444444433  23334446677777766632  2222223333333333322   12233466777777776422


Q ss_pred             CcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHH
Q 012897          222 PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNL  301 (454)
Q Consensus       222 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l  301 (454)
                        -....+.++-++-.-.......-+...+++.|...+++. +..++..++..+..++..-+   ...++.-++|.+..+
T Consensus       363 --~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l  436 (700)
T KOG2137|consen  363 --PKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDS-DVQIQELALQILPTVAESID---VPFVKQAILPRLKNL  436 (700)
T ss_pred             --cccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcc
Confidence              122222233333110111112234457888999999999 99999999999998876322   133445577777776


Q ss_pred             h-hhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 012897          302 L-QNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG  367 (454)
Q Consensus       302 l-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~  367 (454)
                      . +..+..++.+++-++..++...+.  ...   -+.+..+..+.+..+|.+....+.+..+++-..
T Consensus       437 ~~~tt~~~vkvn~L~c~~~l~q~lD~--~~v---~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~  498 (700)
T KOG2137|consen  437 AFKTTNLYVKVNVLPCLAGLIQRLDK--AAV---LDELLPILKCIKTRDPAIVMGFLRIYEALALII  498 (700)
T ss_pred             hhcccchHHHHHHHHHHHHHHHHHHH--HHh---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhc
Confidence            4 345889999999999999843221  111   124666777888899999888888888776543

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=94.67  E-value=2.3  Score=39.15  Aligned_cols=159  Identities=18%  Similarity=0.152  Sum_probs=116.8

Q ss_pred             hHHHHHhhcCCcchhHHHHHHHHHHHHhc-CCHHHHHHHHh-CCC-hHHHHHHhhhc-----c--------hhhHHHHHH
Q 012897          252 LPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVID-AGL-VGPLVNLLQNA-----E--------FDIKKEAAW  315 (454)
Q Consensus       252 l~~L~~~L~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~-~~~-i~~L~~ll~~~-----~--------~~v~~~a~~  315 (454)
                      ++.+...|.+. ...+...+...|..++. ......+.+.. -++ .+.+-.++...     .        +.+|...+.
T Consensus        58 ~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~  136 (330)
T PF11707_consen   58 LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR  136 (330)
T ss_pred             HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence            78899999888 77788899999999998 66666666663 222 33445554321     1        289999999


Q ss_pred             HHHHhcCCCCHHHHHHHHH-cCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHH
Q 012897          316 AISNATSGGTHEQIKYLVR-EGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLE  394 (454)
Q Consensus       316 aL~~l~~~~~~~~~~~l~~-~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~  394 (454)
                      .+..+...+++.....+.+ .+.+..+..-+..++++++...+.+|..-+-.+....+.         .+..+-....+.
T Consensus       137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~---------~K~~~fn~~~L~  207 (330)
T PF11707_consen  137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRS---------TKCKLFNEWTLS  207 (330)
T ss_pred             HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChh---------hhhhhcCHHHHH
Confidence            9989888888777766665 577899999999988999999999999654444433221         233344456788


Q ss_pred             HHHHHhcCCCH----HHHHHHHHHHHHhcC
Q 012897          395 KIENLQSHDNN----EIYEKAVKILETYWL  420 (454)
Q Consensus       395 ~l~~l~~~~~~----~v~~~a~~~l~~~~~  420 (454)
                      +|..+-..+++    .+.+.+...+..+..
T Consensus       208 ~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT  237 (330)
T PF11707_consen  208 QLASLYSRDGEDEKSSVADLVHEFLLALCT  237 (330)
T ss_pred             HHHHHhcccCCcccchHHHHHHHHHHHHhc
Confidence            88888888887    899999998888775

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=94.56  E-value=0.87  Score=37.50  Aligned_cols=143  Identities=13%  Similarity=0.162  Sum_probs=89.8

Q ss_pred             cchhhHHHHHhHhhccCccc-hh----hhh-c-----c-CChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 012897          223 SVLIPALRTVGNIVTGDDFQ-TQ----CII-T-----Y-GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI  290 (454)
Q Consensus       223 ~v~~~a~~~L~~l~~~~~~~-~~----~~~-~-----~-~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~  290 (454)
                      ++|..|+.+|..++...+.. ..    .++ +     . .-...+.-++.++ ++++|..|+.++..+..++.......-
T Consensus         1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp-~~kvR~aA~~~l~~lL~gsk~~L~~Ae   79 (182)
T PF13251_consen    1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDP-SPKVRAAAASALAALLEGSKPFLAQAE   79 (182)
T ss_pred             ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCC-chhHHHHHHHHHHHHHHccHHHHHHHH
Confidence            36778888888888762311 10    111 1     1 2234445555666 999999999999999887654433322


Q ss_pred             hCC-------------------ChHHHHHHhhhc-chhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCH
Q 012897          291 DAG-------------------LVGPLVNLLQNA-EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDP  350 (454)
Q Consensus       291 ~~~-------------------~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~  350 (454)
                      +..                   +-..|+..++.+ +..+....+.++..+....+....+.=.-..++..+..++.+.|+
T Consensus        80 ~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~  159 (182)
T PF13251_consen   80 ESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDP  159 (182)
T ss_pred             hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCC
Confidence            111                   122334444443 677888889999988887654433221112345666667778999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 012897          351 RIVTVCLEGLENILKV  366 (454)
Q Consensus       351 ~v~~~al~~L~~l~~~  366 (454)
                      .++..++.++..++..
T Consensus       160 ~v~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  160 NVRVAALSCLGALLSV  175 (182)
T ss_pred             cHHHHHHHHHHHHHcC
Confidence            9999999999888754

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.54  E-value=0.21  Score=43.94  Aligned_cols=146  Identities=17%  Similarity=0.196  Sum_probs=97.4

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChh
Q 012897           83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD  162 (454)
Q Consensus        83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  162 (454)
                      .+...+..|.+.+.+....++..+..|+...++.....+.. .+..+++-+ +.....|-+.|+.++..+..........
T Consensus        89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvksl-KNlRS~VsraA~~t~~difs~ln~~i~~  166 (334)
T KOG2933|consen   89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSL-KNLRSAVSRAACMTLADIFSSLNNSIDQ  166 (334)
T ss_pred             HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566677788888888889999999887666543333322 345556666 6667789999999999888764222222


Q ss_pred             hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhc
Q 012897          163 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT  237 (454)
Q Consensus       163 ~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  237 (454)
                      ...+.+-.|..--..++.-++..+-.+|..+..+-...       .+++.|+..+++.++.++..++.+..++..
T Consensus       167 ~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~  234 (334)
T KOG2933|consen  167 ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCVI  234 (334)
T ss_pred             HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccce
Confidence            22222222222223345668899999998887654433       457778888999999999999887766653

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=94.48  E-value=1.2  Score=41.56  Aligned_cols=149  Identities=15%  Similarity=0.121  Sum_probs=86.5

Q ss_pred             HHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhc------CCChhHHHHHHHHHH
Q 012897          118 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH------SNDEEVLTDACWALS  191 (454)
Q Consensus       118 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~------~~~~~v~~~a~~~L~  191 (454)
                      ..+.+.+..+.+-+-+..+...+-+..|+..+..|+....   .....-+...+..++.      +.+..-+..|+..++
T Consensus       204 ~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~---~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~  280 (370)
T PF08506_consen  204 EELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFE---KQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIG  280 (370)
T ss_dssp             HHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHH
Confidence            4455555555555555333345677888899999986421   1111112223334443      346677888888888


Q ss_pred             HhccCChH------------HHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhh
Q 012897          192 YLSDGTND------------KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLL  259 (454)
Q Consensus       192 ~l~~~~~~------------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L  259 (454)
                      .++.....            ....++...++|.|. --.+..+-++..|++.+..+-..-+.  +.+  .++++.++..|
T Consensus       281 ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~--~~l--~~~~~~l~~~L  355 (370)
T PF08506_consen  281 ALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK--EQL--LQIFPLLVNHL  355 (370)
T ss_dssp             HHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H--HHH--HHHHHHHHHHT
T ss_pred             HHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH--HHH--HHHHHHHHHHh
Confidence            88754321            234455556666665 11234456788889888887654331  112  25889999999


Q ss_pred             cCCcchhHHHHHHHHH
Q 012897          260 THSHKKSIKKEACWTI  275 (454)
Q Consensus       260 ~~~~~~~v~~~a~~~L  275 (454)
                      .++ +.-|+..|+.++
T Consensus       356 ~~~-~~vv~tyAA~~i  370 (370)
T PF08506_consen  356 QSS-SYVVHTYAAIAI  370 (370)
T ss_dssp             TSS--HHHHHHHHHHH
T ss_pred             CCC-CcchhhhhhhhC
Confidence            999 888998888765

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.46  E-value=0.36  Score=40.21  Aligned_cols=110  Identities=13%  Similarity=0.083  Sum_probs=76.2

Q ss_pred             cccCCCHHHHHHHHHHHHHHhccCCCCcHHHH----------------HHcCCHHHHHHhhcCC-----CChhHHHHHHH
Q 012897            4 GVWSDDSSLQLEATTQFRKLLSIERSPPIEEV----------------IQSGVVPRFVEFLMRE-----DYPQLQFEAAW   62 (454)
Q Consensus         4 ~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~----------------~~~~~l~~L~~lL~~~-----~~~~v~~~a~~   62 (454)
                      .+.+.+....-.++-.|.|++...  .....+                .+...+..|++++..+     +..+-....+.
T Consensus         3 ~i~~~~~~~adl~~MLLsNlT~~~--~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~   80 (192)
T PF04063_consen    3 YITDPKSPLADLACMLLSNLTRSD--SGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLAS   80 (192)
T ss_pred             eecCCCcchHHHHHHHHHHhccch--HHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHH
Confidence            344444455556666777776543  222212                1234577787777661     22455678889


Q ss_pred             HHHHhcCCCchhhHHHHhC--CC--hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh
Q 012897           63 ALTNIASGTSENTKVVIDH--GA--VPIFVKLLASPSDDVREQAVWALGNVAGDSPRC  116 (454)
Q Consensus        63 ~L~~l~~~~~~~~~~~~~~--g~--i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  116 (454)
                      +|.|++. .++.|..+.+.  +.  +..|+.++++.+..-|..++.+|.|+|.+....
T Consensus        81 vl~NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H  137 (192)
T PF04063_consen   81 VLANLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH  137 (192)
T ss_pred             HHHHhcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH
Confidence            9999999 89999999875  34  788888999888888888999999999776644

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=94.37  E-value=1.1  Score=42.70  Aligned_cols=152  Identities=14%  Similarity=0.113  Sum_probs=107.4

Q ss_pred             ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCC---hhHHHHHHHHHHHhcCCCchhhHHHH
Q 012897            3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDY---PQLQFEAAWALTNIASGTSENTKVVI   79 (454)
Q Consensus         3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~---~~v~~~a~~~L~~l~~~~~~~~~~~~   79 (454)
                      +.+.+++...+..|++.+..+...  ......+++...+..|.+++.++..   .++...++.++..+.....-..+. +
T Consensus        90 e~l~~~~~~~~~~a~k~l~sls~d--~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~-~  166 (713)
T KOG2999|consen   90 EILTEGNNISKMEALKELDSLSLD--PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWES-V  166 (713)
T ss_pred             HHHhCCCcHHHHHHHHHHhhcccc--HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeee-c
Confidence            456778888888888888888765  5668889999999999999998761   355666666666665432211111 1


Q ss_pred             hCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCC
Q 012897           80 DHGAVPIFVKLLA--SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP  157 (454)
Q Consensus        80 ~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  157 (454)
                      ...+|.....+..  ..+..+-..|+..+-++...++..+..+.+.-.+..++..+ +..+..++..|...+..+....+
T Consensus       167 ~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~nal~~~a~  245 (713)
T KOG2999|consen  167 SNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNALFRKAP  245 (713)
T ss_pred             ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHHHHhhCC
Confidence            2233444444442  24456677788888888877777788888888899999999 77778888888888888876654


Q ss_pred             C
Q 012897          158 Q  158 (454)
Q Consensus       158 ~  158 (454)
                      .
T Consensus       246 ~  246 (713)
T KOG2999|consen  246 D  246 (713)
T ss_pred             h
Confidence            3

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=94.37  E-value=1.7  Score=40.65  Aligned_cols=119  Identities=13%  Similarity=0.168  Sum_probs=90.4

Q ss_pred             HHHHHHHHhc--cCCCCcHHHHHH-cCCHHHHHHhhcCCCC--hhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHh
Q 012897           16 ATTQFRKLLS--IERSPPIEEVIQ-SGVVPRFVEFLMREDY--PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL   90 (454)
Q Consensus        16 a~~~L~~l~~--~~~~~~~~~~~~-~~~l~~L~~lL~~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l   90 (454)
                      -++.+.+++.  .......+.+++ ..+...|...+++...  +.+-..|+.++..+....|.....+.+.|+++.+++.
T Consensus        80 lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~  159 (379)
T PF06025_consen   80 LLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDA  159 (379)
T ss_pred             HHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHH
Confidence            3444444455  222334555666 5667777788887642  7888999999999999899999999999999999998


Q ss_pred             hC-C---CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhch
Q 012897           91 LA-S---PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE  135 (454)
Q Consensus        91 L~-~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~  135 (454)
                      +. .   ++.++....-.+|+.+|-+.. ..+.+.+.+.+..+++++.+
T Consensus       160 i~~~~i~~s~e~l~~lP~~l~AicLN~~-Gl~~~~~~~~l~~~f~if~s  207 (379)
T PF06025_consen  160 ITAKGILPSSEVLTSLPNVLSAICLNNR-GLEKVKSSNPLDKLFEIFTS  207 (379)
T ss_pred             HhccCCCCcHHHHHHHHHHHhHHhcCHH-HHHHHHhcChHHHHHHHhCC
Confidence            88 4   678888888889999986654 55777778999999998844

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.36  E-value=0.27  Score=43.21  Aligned_cols=146  Identities=18%  Similarity=0.174  Sum_probs=102.5

Q ss_pred             hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchh
Q 012897          165 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ  244 (454)
Q Consensus       165 ~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  244 (454)
                      ...+...+..|.+.+......++..+..++...++.....+. .++-.+++-+++....|...|+.+++.+...-.....
T Consensus        87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~  165 (334)
T KOG2933|consen   87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID  165 (334)
T ss_pred             HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666777888899999999999999998777655555554 5666677777888889999999999998864332222


Q ss_pred             hhhccCChHHHHHhh-c---CCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHh
Q 012897          245 CIITYGALPYLLGLL-T---HSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA  320 (454)
Q Consensus       245 ~~~~~~~l~~L~~~L-~---~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  320 (454)
                      .     -+..++..| .   .+ +..++..|-.+|..+..+-..       ..+++.|+..+....+.++..++..+.+.
T Consensus       166 ~-----~ld~lv~~Ll~ka~~d-nrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~  232 (334)
T KOG2933|consen  166 Q-----ELDDLVTQLLHKASQD-NRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSRC  232 (334)
T ss_pred             H-----HHHHHHHHHHhhhccc-chHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhcccccc
Confidence            2     223333333 2   23 456899999999988864222       12567788888888899998888887776


Q ss_pred             cCCC
Q 012897          321 TSGG  324 (454)
Q Consensus       321 ~~~~  324 (454)
                      ....
T Consensus       233 v~rl  236 (334)
T KOG2933|consen  233 VIRL  236 (334)
T ss_pred             ceec
Confidence            5543

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=94.31  E-value=0.5  Score=44.90  Aligned_cols=226  Identities=15%  Similarity=0.099  Sum_probs=128.4

Q ss_pred             CcccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897            1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID   80 (454)
Q Consensus         1 lv~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (454)
                      |+..+.|+|+.-|......|+.+-...  ...+..+...+...+.+.+.......-....++.++.+..+..-..+.-..
T Consensus       138 Ll~l~~S~D~rER~~lk~~l~~iy~k~--~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~  215 (409)
T PF01603_consen  138 LLELFDSPDPRERDYLKTILHRIYGKF--PNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHK  215 (409)
T ss_dssp             HHHTTTSSTHHHHHHHHHHHHHHHHH---TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHH
Confidence            356789999999999999999887763  445566666678888888876654666778888999988753211111111


Q ss_pred             CCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCC
Q 012897           81 HGAVPIFVKLLASPS-DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP  159 (454)
Q Consensus        81 ~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  159 (454)
                      .=....++.+.+.+. .........++..++..++.....+     +..+++.= ...+..-....+.-+..+...-+..
T Consensus       216 ~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk~W-P~t~s~Kev~FL~el~~il~~~~~~  289 (409)
T PF01603_consen  216 QFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLKHW-PKTNSQKEVLFLNELEEILEVLPPE  289 (409)
T ss_dssp             HHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHHS--SS-HHHHHHHHHHHHHHHTT--HH
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhC-CCCCchhHHHHHHHHHHHHHhcCHH
Confidence            112244444555433 3445555666666665555433332     33334333 2233333333444444554432211


Q ss_pred             C-hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhcCC-----CCCcchhhHHH
Q 012897          160 P-FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLGH-----PSPSVLIPALR  230 (454)
Q Consensus       160 ~-~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~i~~L~~ll~~-----~~~~v~~~a~~  230 (454)
                      . ......+...+..++.+.+..|.+.|+..+.|     + ....++..   .+++.+..-+..     =+..++..|..
T Consensus       290 ~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~-~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~  363 (409)
T PF01603_consen  290 EFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN-----E-YFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQN  363 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----H-HHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----H-HHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            1 22335567788888999999998888876543     2 12223322   256666666533     15678888888


Q ss_pred             HHhHhhccCc
Q 012897          231 TVGNIVTGDD  240 (454)
Q Consensus       231 ~L~~l~~~~~  240 (454)
                      ++..+...++
T Consensus       364 vl~~l~~~d~  373 (409)
T PF01603_consen  364 VLKILMEMDP  373 (409)
T ss_dssp             HHHHHHTTSH
T ss_pred             HHHHHHHhCH
Confidence            8888876555

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=94.28  E-value=2  Score=40.88  Aligned_cols=261  Identities=12%  Similarity=0.100  Sum_probs=136.6

Q ss_pred             HHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC
Q 012897           14 LEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS   93 (454)
Q Consensus        14 ~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~   93 (454)
                      ..+...|..+............++...+..|+.++.+++ ++-|.....+|..+.......|..+.. .+...+..++..
T Consensus       108 ~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e  185 (409)
T PF01603_consen  108 QLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYE  185 (409)
T ss_dssp             HHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcC
Confidence            344555666665532222333556667889999999999 999999999999988755566655543 445666666654


Q ss_pred             -CCHHHHHHHHHHHHHhhCCCh-hhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHH
Q 012897           94 -PSDDVREQAVWALGNVAGDSP-RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPAL  171 (454)
Q Consensus        94 -~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l  171 (454)
                       ....-...++.+++.+..+-. +.+..-.. -....++.+.....-.........++..++..++    .....++..+
T Consensus       186 ~~~~~gI~elLeil~sii~gf~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp----~l~~~~i~~l  260 (409)
T PF01603_consen  186 TERHNGIAELLEILGSIINGFAVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP----SLAEPVIKGL  260 (409)
T ss_dssp             TS--STHHHHHHHHHHHHTT--SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G----GGHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHHHhccCCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc----hhHHHHHHHH
Confidence             344455556777777764321 12111000 0011122222111122223333444444443221    1112233333


Q ss_pred             HHhhcCCChhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhcc-
Q 012897          172 AQLVHSNDEEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITY-  249 (454)
Q Consensus       172 ~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-  249 (454)
                      ++.=-..++.-..-.+.-+..+....+ .....+ ...++..+..++.+++..|.+.|+..+.|=-     .. .++.. 
T Consensus       261 lk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i-~~~lf~~la~ci~S~h~qVAErAl~~w~n~~-----~~-~li~~~  333 (409)
T PF01603_consen  261 LKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKI-MVPLFKRLAKCISSPHFQVAERALYFWNNEY-----FL-SLISQN  333 (409)
T ss_dssp             HHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHH-HHHHHHHHHHHHTSSSHHHHHHHHGGGGSHH-----HH-HHHHCT
T ss_pred             HHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHCCHH-----HH-HHHHhC
Confidence            333334454444445555555554332 222222 2367778888889999999999987764421     11 12221 


Q ss_pred             --CChHHHHHhhcC----CcchhHHHHHHHHHHHHhcCCHHHHHH
Q 012897          250 --GALPYLLGLLTH----SHKKSIKKEACWTISNITAGNRDQIQA  288 (454)
Q Consensus       250 --~~l~~L~~~L~~----~~~~~v~~~a~~~L~nl~~~~~~~~~~  288 (454)
                        .+++.+...+..    .=+..+|..|..++..+..-+++....
T Consensus       334 ~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~  378 (409)
T PF01603_consen  334 SRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDK  378 (409)
T ss_dssp             HHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH
Confidence              356666666533    115679999999999888866665444

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=94.12  E-value=1.3  Score=43.78  Aligned_cols=230  Identities=16%  Similarity=0.157  Sum_probs=128.0

Q ss_pred             CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHH
Q 012897            9 DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV   88 (454)
Q Consensus         9 d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~   88 (454)
                      |+..+-.-++.|-+++..-  +  ..+....++|.|+..+.+..   ..-..+-.+..++...+   ...+..-.++.|.
T Consensus       286 dn~qKs~Flk~Ls~~ip~f--p--~rv~~~kiLP~L~~el~n~~---~vp~~LP~v~~i~~~~s---~~~~~~~~~p~l~  355 (700)
T KOG2137|consen  286 DNSQKSSFLKGLSKLIPTF--P--ARVLFQKILPTLVAELVNTK---MVPIVLPLVLLIAEGLS---QNEFGPKMLPALK  355 (700)
T ss_pred             CcHHHHHHHHHHHHhhccC--C--HHHHHHhhhhHHHHHhcccc---ccccccchhhhhhhccc---hhhhhhhhhHHHH
Confidence            4555555555565555442  1  22344567777777774432   11122222222232111   1111223566666


Q ss_pred             HhhCCC-CHHHHHHHHHHHHHh---hCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhh
Q 012897           89 KLLASP-SDDVREQAVWALGNV---AGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQV  164 (454)
Q Consensus        89 ~lL~~~-~~~v~~~a~~~L~~l---~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  164 (454)
                      ..++.. +.++.   +.++-++   ....+   ..-+...+++.|...+ ++.+..++..++..+..++..-+  -..+.
T Consensus       356 pi~~~~~~~~~~---l~i~e~mdlL~~Kt~---~e~~~~~IlplL~~S~-~~~~~~iQ~~~L~~lptv~e~iD--~~~vk  426 (700)
T KOG2137|consen  356 PIYSASDPKQAL---LFILENMDLLKEKTP---PEEVKEKILPLLYRSL-EDSDVQIQELALQILPTVAESID--VPFVK  426 (700)
T ss_pred             HHhccCCcccch---hhHHhhHHHHHhhCC---hHHHHHHHHHHHHHHh-cCcchhhHHHHHHhhhHHHHhcc--HHHHH
Confidence            666642 22222   2222222   11111   1111222455555555 66778888888888888876532  22233


Q ss_pred             hchHHHHHHh-hcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccch
Q 012897          165 RPALPALAQL-VHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQT  243 (454)
Q Consensus       165 ~~~l~~l~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  243 (454)
                      ..++|.+-.+ +.+.+..++.+++-|+..++..    .+...-.+.+..+....+..++.+....+.+..++....... 
T Consensus       427 ~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~----lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-  501 (700)
T KOG2137|consen  427 QAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR----LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-  501 (700)
T ss_pred             HHHHHHhhcchhcccchHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-
Confidence            5677777665 4567889999999999998832    222222234555666667788889888888888887654433 


Q ss_pred             hhhhccCChHHHHHhhcCC
Q 012897          244 QCIITYGALPYLLGLLTHS  262 (454)
Q Consensus       244 ~~~~~~~~l~~L~~~L~~~  262 (454)
                      ..++...++|.++.+...+
T Consensus       502 ~ev~~~~VlPlli~ls~~~  520 (700)
T KOG2137|consen  502 VEVMAENVLPLLIPLSVAP  520 (700)
T ss_pred             eeeehhhhhhhhhhhhhcc
Confidence            3466668888888888766

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=94.12  E-value=1.1  Score=44.16  Aligned_cols=144  Identities=19%  Similarity=0.153  Sum_probs=102.7

Q ss_pred             CHHHHHHhhcCC---CChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChh
Q 012897           40 VVPRFVEFLMRE---DYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPR  115 (454)
Q Consensus        40 ~l~~L~~lL~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~  115 (454)
                      .-|.+.+...+.   +++.++..|.-+|..+..-+.+....     -+|.++..+. +++|.+|.+++-.++.+.-.-..
T Consensus       893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~e-----hlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~  967 (1128)
T COG5098         893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSE-----HLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT  967 (1128)
T ss_pred             hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence            344444444441   23899999999999887644443322     3788999887 69999999999999887532211


Q ss_pred             hHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 012897          116 CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSD  195 (454)
Q Consensus       116 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~  195 (454)
                      ..+.     ....|.+.| .+.+..|++.++.++..|....    .....|-++.+..+|.++|..+..-|-..+..++.
T Consensus       968 ~~de-----~t~yLyrrL-~De~~~V~rtclmti~fLilag----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098         968 TADE-----HTHYLYRRL-GDEDADVRRTCLMTIHFLILAG----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred             hhHH-----HHHHHHHHh-cchhhHHHHHHHHHHHHHHHcc----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence            1111     245566677 6778899999999999987543    33457888999999999999998888778877775


Q ss_pred             CCh
Q 012897          196 GTN  198 (454)
Q Consensus       196 ~~~  198 (454)
                      .+.
T Consensus      1038 KdN 1040 (1128)
T COG5098        1038 KDN 1040 (1128)
T ss_pred             ccc
Confidence            543

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=94.02  E-value=4.9  Score=41.41  Aligned_cols=129  Identities=16%  Similarity=0.120  Sum_probs=91.2

Q ss_pred             CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHh
Q 012897           95 SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQL  174 (454)
Q Consensus        95 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~l  174 (454)
                      .+.++..+.-+++++|--.....+.     .+|.+++-|..+....++.+...+++.+|...    -.+....+|.+...
T Consensus       944 ~~~vra~~vvTlakmcLah~~LaKr-----~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~ 1014 (1529)
T KOG0413|consen  944 SDKVRAVGVVTLAKMCLAHDRLAKR-----LMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAAS 1014 (1529)
T ss_pred             chHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHH
Confidence            3578889999999999544433332     48899999988888888888888888888642    23446789999999


Q ss_pred             hcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhh
Q 012897          175 VHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV  236 (454)
Q Consensus       175 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~  236 (454)
                      |.++++-+++.++-.|.++....--.    .+..++-.++.-+-+.+++++.-|=.+++.+.
T Consensus      1015 L~Dp~~iVRrqt~ilL~rLLq~~~vK----w~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL 1072 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFGIVK----WNGELFIRFMLALLDANEDIRNDAKFYISEVL 1072 (1529)
T ss_pred             hcCchHHHHHHHHHHHHHHHhhhhhh----cchhhHHHHHHHHcccCHHHHHHHHHHHHHHH
Confidence            99999999999999999987543211    11123333444444566677777766666665

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=93.97  E-value=0.37  Score=38.09  Aligned_cols=75  Identities=8%  Similarity=0.028  Sum_probs=64.3

Q ss_pred             ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCC-CCHHHHHHHHHHHHHHHHhhh
Q 012897          294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC-PDPRIVTVCLEGLENILKVGE  368 (454)
Q Consensus       294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~al~~L~~l~~~~~  368 (454)
                      .+..|..-+.++++.++..|+..|-.+..++.......+.+..++..|..++.. .++.|+..++..+........
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~  113 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK  113 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence            456677778888999999999999999999988888888888999999999988 788999999998888865443

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=93.97  E-value=0.96  Score=51.69  Aligned_cols=268  Identities=14%  Similarity=0.163  Sum_probs=153.1

Q ss_pred             ccCCCHHHHHHHHHHHHHHhccCCC-----CcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 012897            5 VWSDDSSLQLEATTQFRKLLSIERS-----PPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVI   79 (454)
Q Consensus         5 L~s~d~~~~~~a~~~L~~l~~~~~~-----~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   79 (454)
                      +..+|++++..+...+..+......     +..-. +....+..+..+-....++.++......+.      +.......
T Consensus       490 ~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~-~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~~~la  562 (2341)
T KOG0891|consen  490 LEADDSEIRKNAALTCCELLKYDIICSQTSPHALQ-VVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFDAQLA  562 (2341)
T ss_pred             HhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHH-HHHHHHHHHHHHhccCCCcchhhhHHhhhc------cchhhhhc
Confidence            4567899999998887777655311     11111 112233344443333333676666555443      23334455


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCC
Q 012897           80 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP  159 (454)
Q Consensus        80 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  159 (454)
                      +.+.+..+...+..+...++..+...+++++..+|...-.-+....+..+-++. .+.-..+...+..-+..+....+..
T Consensus       563 Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~-~sg~~r~~~~~a~~~~~~i~~~~~~  641 (2341)
T KOG0891|consen  563 QPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELE-FSGMARTKEESAKLLCELIISSPVL  641 (2341)
T ss_pred             CchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhh-hcchHHhHHHHHHHhhHHHHHHHHH
Confidence            556677777788888899999999999999987764322222211121111111 1111111111111111111110111


Q ss_pred             ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCCcchhhHHHHHhHhhcc
Q 012897          160 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTG  238 (454)
Q Consensus       160 ~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~  238 (454)
                      ........+..++..+.+.+..+...+..++..+|...........+ ..++.+.+.+.+ .+..-+.+++++++++...
T Consensus       642 i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~  720 (2341)
T KOG0891|consen  642 ISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESS  720 (2341)
T ss_pred             HHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence            11222445566777777888888888999999998765544444445 556666666644 5667788999999999875


Q ss_pred             Cccchhhhhc-cCChHHHHHhhcCCcchhHHHHHHHHHHHHhcC
Q 012897          239 DDFQTQCIIT-YGALPYLLGLLTHSHKKSIKKEACWTISNITAG  281 (454)
Q Consensus       239 ~~~~~~~~~~-~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~  281 (454)
                      .........+ ..++..+...++......+|..+...++++...
T Consensus       721 ~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~  764 (2341)
T KOG0891|consen  721 TGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL  764 (2341)
T ss_pred             cceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence            5433322222 346677777777776777889999888877653

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=93.96  E-value=0.33  Score=38.31  Aligned_cols=73  Identities=16%  Similarity=0.234  Sum_probs=62.0

Q ss_pred             CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHH
Q 012897          337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH-DNNEIYEKAVKIL  415 (454)
Q Consensus       337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~-~~~~v~~~a~~~l  415 (454)
                      ++..|..-+.++++.++..++..|..+++.+...            |...+...+.+..|.++... .++.|++++..++
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~------------fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li  105 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKR------------FHQEVASRDFTQELKKLINDRVHPTVKEKLREVV  105 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH------------HHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence            5777888888999999999999999999977653            67777778888999998777 8899999999999


Q ss_pred             HHhcCc
Q 012897          416 ETYWLE  421 (454)
Q Consensus       416 ~~~~~~  421 (454)
                      ..+-..
T Consensus       106 ~~W~~~  111 (144)
T cd03568         106 KQWADE  111 (144)
T ss_pred             HHHHHH
Confidence            987643

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=93.86  E-value=0.54  Score=37.09  Aligned_cols=75  Identities=11%  Similarity=0.029  Sum_probs=63.1

Q ss_pred             ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccC-CCCHHHHHHHHHHHHHHHHhhh
Q 012897          294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV-CPDPRIVTVCLEGLENILKVGE  368 (454)
Q Consensus       294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~-~~~~~v~~~al~~L~~l~~~~~  368 (454)
                      .+..|..-+.++++.++..|+..|-.+..++.......+.+.+++..|..++. ..++.|+..++..+........
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~  117 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR  117 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence            46667777888999999999999999999887777777888899999999887 5677899999999988876543

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=93.50  E-value=0.32  Score=34.99  Aligned_cols=84  Identities=14%  Similarity=0.168  Sum_probs=63.4

Q ss_pred             HHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHH
Q 012897          210 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAV  289 (454)
Q Consensus       210 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  289 (454)
                      +...+..+.++.+.+|..++..|..+.....  ....-..+++..++..++++ ++-+--.|..++..++...++     
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~-----   76 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPD-----   76 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChH-----
Confidence            4556777889999999999999999998655  11222346788889999999 999999999999999975554     


Q ss_pred             HhCCChHHHHHHhhh
Q 012897          290 IDAGLVGPLVNLLQN  304 (454)
Q Consensus       290 ~~~~~i~~L~~ll~~  304 (454)
                         .+++.|++...+
T Consensus        77 ---~vl~~L~~~y~~   88 (92)
T PF10363_consen   77 ---EVLPILLDEYAD   88 (92)
T ss_pred             ---HHHHHHHHHHhC
Confidence               245555555443

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=93.49  E-value=7  Score=36.99  Aligned_cols=191  Identities=17%  Similarity=0.209  Sum_probs=121.7

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhCCCh---hhHHHHHhcCChHHHHHHhch------hhhhhHHHHHHHHHHhhcCCC
Q 012897           86 IFVKLLASPSDDVREQAVWALGNVAGDSP---RCRDLVLSQGALIPLLAQLNE------RAKLSMLRNATWTLSNFCRGK  156 (454)
Q Consensus        86 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~i~~l~~~l~~------~~~~~~~~~a~~~L~~l~~~~  156 (454)
                      .+..++...+++-|..++.....++...+   ..++.+++.-+.+.+-+++..      .++.-.+.-++..|..+|+.+
T Consensus        15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p   94 (698)
T KOG2611|consen   15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP   94 (698)
T ss_pred             hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence            35667777888888889999999885443   345667777777777777742      234445666778888999887


Q ss_pred             CCCChhhhhchHHHHHHhhcCC-Chh------HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchh-hH
Q 012897          157 PQPPFDQVRPALPALAQLVHSN-DEE------VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI-PA  228 (454)
Q Consensus       157 ~~~~~~~~~~~l~~l~~ll~~~-~~~------v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~-~a  228 (454)
                      +.......-.-+|.+..++... +++      +...+-.||..++...... ..++..|.++.+.++-.-++...-. -+
T Consensus        95 ElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~-~~Lia~G~~~~~~Q~y~~~~~~~d~ala  173 (698)
T KOG2611|consen   95 ELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGL-MTLIASGGLRVIAQMYELPDGSHDMALA  173 (698)
T ss_pred             hhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchh-HHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence            6555555567788888888643 222      6788888999988875544 6688889999999876554443322 23


Q ss_pred             HHHHhHhhccCccch---hhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897          229 LRTVGNIVTGDDFQT---QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  280 (454)
Q Consensus       229 ~~~L~~l~~~~~~~~---~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~  280 (454)
                      +.++--...+.....   ..+.  ..+..+..=+... +...+.+.|..|..+..
T Consensus       174 l~Vlll~~~~~~cw~e~~~~fl--ali~~va~df~~~-~~a~KfElc~lL~~vl~  225 (698)
T KOG2611|consen  174 LKVLLLLVSKLDCWSETIERFL--ALIAAVARDFAVL-HNALKFELCHLLSAVLS  225 (698)
T ss_pred             HHHHHHHHHhcccCcCCHHHHH--HHHHHHHHHHHHh-hhHHHHHHHHHHHHHHh
Confidence            333333333222111   1111  1233333334444 55678888888886554

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=93.36  E-value=0.51  Score=37.21  Aligned_cols=73  Identities=18%  Similarity=0.330  Sum_probs=61.0

Q ss_pred             CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhc-CCCHHHHHHHHHHH
Q 012897          337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS-HDNNEIYEKAVKIL  415 (454)
Q Consensus       337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~-~~~~~v~~~a~~~l  415 (454)
                      ++..|..-+.++++.++..++..|..+++.+...            |...+...+.++.|.++.. ..++.|++++..++
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~------------fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li  109 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTH------------FHDEVASREFMDELKDLIKTTKNEEVRQKILELI  109 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHH------------HHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence            5778888888999999999999999999875432            6777778888888988865 68889999999999


Q ss_pred             HHhcCc
Q 012897          416 ETYWLE  421 (454)
Q Consensus       416 ~~~~~~  421 (454)
                      ..+...
T Consensus       110 ~~W~~~  115 (142)
T cd03569         110 QAWALA  115 (142)
T ss_pred             HHHHHH
Confidence            987753

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=93.36  E-value=0.83  Score=38.06  Aligned_cols=105  Identities=16%  Similarity=0.116  Sum_probs=71.4

Q ss_pred             cCCCCCcchhhHHHHHhHhhccCccchhhhh----------------ccCChHHHHHhhcCC-----cchhHHHHHHHHH
Q 012897          217 LGHPSPSVLIPALRTVGNIVTGDDFQTQCII----------------TYGALPYLLGLLTHS-----HKKSIKKEACWTI  275 (454)
Q Consensus       217 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~----------------~~~~l~~L~~~L~~~-----~~~~v~~~a~~~L  275 (454)
                      +.+++......++..|+|+++... ....++                +...+..|+..+..+     ....-....+.++
T Consensus         4 i~~~~~~~adl~~MLLsNlT~~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl   82 (192)
T PF04063_consen    4 ITDPKSPLADLACMLLSNLTRSDS-GCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVL   82 (192)
T ss_pred             ecCCCcchHHHHHHHHHHhccchH-HHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHH
Confidence            344555666777788888887443 222222                223567777777551     1234556788899


Q ss_pred             HHHhcCCHHHHHHHHh--CCC--hHHHHHHhhhcchhhHHHHHHHHHHhcCC
Q 012897          276 SNITAGNRDQIQAVID--AGL--VGPLVNLLQNAEFDIKKEAAWAISNATSG  323 (454)
Q Consensus       276 ~nl~~~~~~~~~~l~~--~~~--i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  323 (454)
                      .|++.. ++.++.+++  .+.  +..|+.++++.+..-|.-++.+|.|++..
T Consensus        83 ~NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd  133 (192)
T PF04063_consen   83 ANLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD  133 (192)
T ss_pred             HHhcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Confidence            999865 677777774  334  78888888888888888999999999984

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=93.19  E-value=0.6  Score=36.57  Aligned_cols=72  Identities=18%  Similarity=0.234  Sum_probs=59.4

Q ss_pred             CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcC------CCHHHHHH
Q 012897          337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH------DNNEIYEK  410 (454)
Q Consensus       337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~------~~~~v~~~  410 (454)
                      ++..|..-++++++.++..++..|..+++.+...            |...+...+++..+.++...      .++.|+++
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~------------fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~k  106 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGER------------FHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTK  106 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHH------------HHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence            5777888889999999999999999999876543            66777778888888888743      57899999


Q ss_pred             HHHHHHHhcC
Q 012897          411 AVKILETYWL  420 (454)
Q Consensus       411 a~~~l~~~~~  420 (454)
                      ...++..+-.
T Consensus       107 il~li~~W~~  116 (139)
T cd03567         107 IIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHH
Confidence            9999998764

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=93.18  E-value=7.6  Score=36.50  Aligned_cols=307  Identities=15%  Similarity=0.128  Sum_probs=158.3

Q ss_pred             ccCCCHHHHHHHHHHHHHHhccCCCC-cHHHHHHcCCHHHHHHhhc----C------CCChhHHHHHHHHHHHhcCCCch
Q 012897            5 VWSDDSSLQLEATTQFRKLLSIERSP-PIEEVIQSGVVPRFVEFLM----R------EDYPQLQFEAAWALTNIASGTSE   73 (454)
Q Consensus         5 L~s~d~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~~l~~L~~lL~----~------~~~~~v~~~a~~~L~~l~~~~~~   73 (454)
                      |...+.+-|..|...|.+.+...... ....+.+  -++.+++.++    +      +.+..+..+|+++|+.+.. +++
T Consensus         2 la~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~-~~~   78 (372)
T PF12231_consen    2 LAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLY-HPE   78 (372)
T ss_pred             CCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHc-cHH
Confidence            56678888999999999988765322 2222222  2455555433    2      1126788999999999987 555


Q ss_pred             hhHHHHhCC---ChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc---h-hhhhhHHHH
Q 012897           74 NTKVVIDHG---AVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN---E-RAKLSMLRN  144 (454)
Q Consensus        74 ~~~~~~~~g---~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~-~~~~~~~~~  144 (454)
                      ....+-+.-   ++...+..+.+  .+..+...++|+|..-- .++    .++....+..++..+.   + -++..+...
T Consensus        79 i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~-f~~----~~~~~~~~~~l~~~l~~i~~~~~s~si~~e  153 (372)
T PF12231_consen   79 IVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQK-FSP----KIMTSDRVERLLAALHNIKNRFPSKSIISE  153 (372)
T ss_pred             HHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CCC----cccchhhHHHHHHHHHHhhccCCchhHHHH
Confidence            444443321   34555556654  34667777777776642 222    2233333444554442   1 345678888


Q ss_pred             HHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh---HHHHH---HHHh----C-----c
Q 012897          145 ATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN---DKIQA---VIEA----G-----V  209 (454)
Q Consensus       145 a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~---~~~~~---~~~~----~-----~  209 (454)
                      .+.++.++....+..-......-+|.++..+-+....++..|...+..+...-+   .....   ..+.    +     +
T Consensus       154 rL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~  233 (372)
T PF12231_consen  154 RLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLY  233 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHH
Confidence            888888888775444333334467777777667777777776666555432111   11111   1111    1     2


Q ss_pred             HHHHHHhcCCCCCcchhhHHHH-HhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc---CCHHH
Q 012897          210 CPRLVELLGHPSPSVLIPALRT-VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA---GNRDQ  285 (454)
Q Consensus       210 i~~L~~ll~~~~~~v~~~a~~~-L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~---~~~~~  285 (454)
                      .+.+..++.+++......-+|. +..+. +.......-.-+..+...-..+.++ ++.+|..|..+=..+..   .++..
T Consensus       234 ~~~L~~mi~~~~~~~~a~~iW~~~i~LL-~~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k~~A~~aW~~liy~~~~~~~~  311 (372)
T PF12231_consen  234 CERLKEMIKSKDEYKLAMQIWSVVILLL-GSSRLDSWEHLNEWLKVPEKCFNSS-DPQVKIQAFKAWRRLIYASNPNELT  311 (372)
T ss_pred             HHHHHHHHhCcCCcchHHHHHHHHHHHh-CCchhhccHhHhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhcCCccc
Confidence            2335555555332222222222 22222 2221000011123445555566777 88899888766554443   22211


Q ss_pred             HHHHHhCCChHHHHHHhhhc-ch----hhHHHHHHHHHHhcC
Q 012897          286 IQAVIDAGLVGPLVNLLQNA-EF----DIKKEAAWAISNATS  322 (454)
Q Consensus       286 ~~~l~~~~~i~~L~~ll~~~-~~----~v~~~a~~aL~~l~~  322 (454)
                      ....++- +..++...++.. ..    +++..+...++++..
T Consensus       312 ~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly  352 (372)
T PF12231_consen  312 SPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY  352 (372)
T ss_pred             cHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence            1112211 122233333332 23    666777777776654

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=93.06  E-value=0.92  Score=36.67  Aligned_cols=37  Identities=24%  Similarity=0.281  Sum_probs=29.6

Q ss_pred             CChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHH
Q 012897          250 GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI  286 (454)
Q Consensus       250 ~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~  286 (454)
                      ..++.|+.+|+++.+..+|.++..+++.+.+-+|...
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~   46 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKH   46 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHH
Confidence            4577888999888779999999999999987544433

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=93.05  E-value=5.9  Score=34.94  Aligned_cols=213  Identities=19%  Similarity=0.121  Sum_probs=122.3

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCC---CcHHHHHH------c-CCHHHH----HHhhcCCCChhHHHHHHHHHHHh
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERS---PPIEEVIQ------S-GVVPRF----VEFLMREDYPQLQFEAAWALTNI   67 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~---~~~~~~~~------~-~~l~~L----~~lL~~~~~~~v~~~a~~~L~~l   67 (454)
                      +.+|.+..+..=..|+..|.+++..-.-   ...+.+.+      . |..+.+    .+-+.++.   ..+.++..|..+
T Consensus        13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~---t~e~tl~lL~~L   89 (262)
T PF14225_consen   13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSS---TYELTLRLLSRL   89 (262)
T ss_pred             HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCC---cHHHHHHHHHHH
Confidence            4578888888889999999998766421   11222211      2 333333    44444443   355666677776


Q ss_pred             cCC-------CchhhHHHHhCCChHHHHHhhCCCC----HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchh
Q 012897           68 ASG-------TSENTKVVIDHGAVPIFVKLLASPS----DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER  136 (454)
Q Consensus        68 ~~~-------~~~~~~~~~~~g~i~~L~~lL~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~  136 (454)
                      +..       ..+.+-.+.-.+.+|.++.-+++++    ......++..|+.+|....        ...+..++....+.
T Consensus        90 ~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~  161 (262)
T PF14225_consen   90 TPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKG  161 (262)
T ss_pred             hcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhc
Confidence            652       1222333333456778888777766    2344456677888873221        11233344333222


Q ss_pred             ---hhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 012897          137 ---AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL  213 (454)
Q Consensus       137 ---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L  213 (454)
                         ...+....++..|+.-..  +    ......+..+..+|.++-+.++..++..|..+...-+....  ...+++..+
T Consensus       162 ~fr~~~dfl~~v~~~l~~~f~--P----~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispl  233 (262)
T PF14225_consen  162 RFRDKDDFLSQVVSYLREAFF--P----DHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPL  233 (262)
T ss_pred             CCCCHHHHHHHHHHHHHHHhC--c----hhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHH
Confidence               233444444444443221  1    12245667788999999999999999999988765443322  445688888


Q ss_pred             HHhcCCCCCcchhhHHHHHhHhh
Q 012897          214 VELLGHPSPSVLIPALRTVGNIV  236 (454)
Q Consensus       214 ~~ll~~~~~~v~~~a~~~L~~l~  236 (454)
                      .++++.+-   -..|+.+|-...
T Consensus       234 lrlL~t~~---~~eAL~VLd~~v  253 (262)
T PF14225_consen  234 LRLLQTDL---WMEALEVLDEIV  253 (262)
T ss_pred             HHHhCCcc---HHHHHHHHHHHH
Confidence            88887653   445555554444

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=92.88  E-value=0.6  Score=38.00  Aligned_cols=114  Identities=23%  Similarity=0.151  Sum_probs=76.5

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc--CChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC---
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQ--GALIPLLAQLNERAKLSMLRNATWTLSNFCRGK---  156 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~---  156 (454)
                      ..+..+.++|+++++.-|-.++..+...+..++.  +.+.+.  ..+..++..+.+.....+.+.++.++..+...-   
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            3567788899999999999999888888865432  222222  247788888877777888999999998887554   


Q ss_pred             CCCChhhh----hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 012897          157 PQPPFDQV----RPALPALAQLVHSNDEEVLTDACWALSYLSDGTND  199 (454)
Q Consensus       157 ~~~~~~~~----~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~  199 (454)
                      +....+..    ..+++.++.+++.  ......++.+|..+....+.
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt  147 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT  147 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence            22222322    3445555555543  56667777777777655443

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=92.86  E-value=0.57  Score=39.82  Aligned_cols=79  Identities=23%  Similarity=0.273  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHhcCCCchhhHHHHhCC-------ChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChh-hHHHHHhcCCh
Q 012897           56 LQFEAAWALTNIASGTSENTKVVIDHG-------AVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPR-CRDLVLSQGAL  126 (454)
Q Consensus        56 v~~~a~~~L~~l~~~~~~~~~~~~~~g-------~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i  126 (454)
                      -|..|+++|++++- .+.+.+.+...+       ++..|..++.. +++..|+.|+-.|.+++..+.. .+....+.+.+
T Consensus       140 PqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i  218 (257)
T PF12031_consen  140 PQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI  218 (257)
T ss_pred             HHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence            48899999999998 566666666554       34555555554 7789999999999999966554 45666677889


Q ss_pred             HHHHHHhch
Q 012897          127 IPLLAQLNE  135 (454)
Q Consensus       127 ~~l~~~l~~  135 (454)
                      ..|+.++.+
T Consensus       219 ~~Li~FiE~  227 (257)
T PF12031_consen  219 SHLIAFIED  227 (257)
T ss_pred             HHHHHHHHH
Confidence            999999943

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=92.73  E-value=0.85  Score=38.18  Aligned_cols=139  Identities=13%  Similarity=0.186  Sum_probs=84.9

Q ss_pred             HHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcC---C-CChhHHHHHHHHHHHhcC-CCchhhHHHHhCCChHHHHH
Q 012897           15 EATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR---E-DYPQLQFEAAWALTNIAS-GTSENTKVVIDHGAVPIFVK   89 (454)
Q Consensus        15 ~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~---~-~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~   89 (454)
                      .|+..|.-+++.  ++....+++..+--.+..+|..   + ..+.+|..++.+++.+.. +++...+.+....++|.++.
T Consensus       119 naL~lLQclaSh--Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr  196 (315)
T COG5209         119 NALNLLQCLASH--PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR  196 (315)
T ss_pred             HHHHHHHHHhcC--cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence            455445445554  4555555554332223333332   2 236789999999999998 56777888888999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc-------CChHHHHHHhchhhhhhHHHHHHHHHHhhcCC
Q 012897           90 LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQ-------GALIPLLAQLNERAKLSMLRNATWTLSNFCRG  155 (454)
Q Consensus        90 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-------~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  155 (454)
                      .++.+++--+..++.++..+..++..........       ..+..++..+.+.....+.+.++.+-..|+..
T Consensus       197 Ime~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~  269 (315)
T COG5209         197 IMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK  269 (315)
T ss_pred             HHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence            9999999999999999998877665432221111       11222232222334445555555555555544

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=92.63  E-value=2.4  Score=35.35  Aligned_cols=140  Identities=16%  Similarity=0.144  Sum_probs=87.9

Q ss_pred             ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 012897            3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG   82 (454)
Q Consensus         3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g   82 (454)
                      +..-+++..++..|+..+..++...=-.+..      .+|.++.+..+++ +.++..|...+..+....+.....-...|
T Consensus        15 ~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~------cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~~~~~~g   87 (187)
T PF12830_consen   15 ELCLSSDDSVRLAALQVLELILRQGLVNPKQ------CVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVESRYSEG   87 (187)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHhcCCCChHH------HHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            4456789999999999998888764222222      4899999999999 99999999999999886655554444434


Q ss_pred             ChHHHHHhhCC--CCHH--H---HHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhh-------hhhHHHHHHHH
Q 012897           83 AVPIFVKLLAS--PSDD--V---REQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA-------KLSMLRNATWT  148 (454)
Q Consensus        83 ~i~~L~~lL~~--~~~~--v---~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-------~~~~~~~a~~~  148 (454)
                       +..-..+-..  ++..  .   ....+..+..+...+...|..+     +..+++.+..+.       ...-.....++
T Consensus        88 -i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~~~~Fl  161 (187)
T PF12830_consen   88 -IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLDFLLFL  161 (187)
T ss_pred             -HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHHHHHHH
Confidence             3333332221  1111  1   4455666667766555566654     556666663322       23345555555


Q ss_pred             HHhhcCC
Q 012897          149 LSNFCRG  155 (454)
Q Consensus       149 L~~l~~~  155 (454)
                      ..+|+.-
T Consensus       162 a~nLA~l  168 (187)
T PF12830_consen  162 AENLATL  168 (187)
T ss_pred             HHHHhcC
Confidence            5666544

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=92.62  E-value=18  Score=39.43  Aligned_cols=127  Identities=11%  Similarity=0.099  Sum_probs=80.0

Q ss_pred             CCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhh
Q 012897          292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEK  371 (454)
Q Consensus       292 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~  371 (454)
                      .+++|.|-.-|.+++..+|..|...++.+..........  .........+.-+.+.+++||..++....+++...+...
T Consensus       258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~--~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~  335 (1266)
T KOG1525|consen  258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSE--TYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIA  335 (1266)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcc--cchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhh
Confidence            578999999999999999999999999998853221110  012345566666777788888888888777765533222


Q ss_pred             hccCC----------cc------------cccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Q 012897          372 NMGTA----------TA------------DVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLE  421 (454)
Q Consensus       372 ~~~~~----------~~------------~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  421 (454)
                      +....          ..            ....+.-.+... .+......+.+.-..|+..|..-+..+|..
T Consensus       336 ~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~  406 (1266)
T KOG1525|consen  336 KASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN  406 (1266)
T ss_pred             hHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            11000          00            011111112222 445555556778889999998888877764

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=92.61  E-value=0.51  Score=39.37  Aligned_cols=109  Identities=9%  Similarity=0.140  Sum_probs=72.9

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHhc-CCCchhhHHHHhCCChHHHHHhhCC---------CCHHHHHHHHHHHHHhh
Q 012897           41 VPRFVEFLMREDYPQLQFEAAWALTNIA-SGTSENTKVVIDHGAVPIFVKLLAS---------PSDDVREQAVWALGNVA  110 (454)
Q Consensus        41 l~~L~~lL~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~g~i~~L~~lL~~---------~~~~v~~~a~~~L~~l~  110 (454)
                      ...+++.+.+.. ...  ..+..|.... .........+++.||+..|+.+|..         .+......++.|+..+.
T Consensus        68 p~~~i~~L~~~~-~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~  144 (187)
T PF06371_consen   68 PEWYIKKLKSRP-STS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM  144 (187)
T ss_dssp             HHHHHHHHTTT---HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHccC-ccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence            445667776655 221  2222332222 2345677888888999999998853         34578888999999998


Q ss_pred             CCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhc
Q 012897          111 GDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC  153 (454)
Q Consensus       111 ~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  153 (454)
                      .........+...+.+..++..+ .+++..++..++.+|..+|
T Consensus       145 n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  145 NTKYGLEAVLSHPDSVNLIALSL-DSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             SSHHHHHHHHCSSSHHHHHHHT---TTSHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHcCcHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence            66655555555567788888888 6788999999999998876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=92.43  E-value=7.1  Score=39.28  Aligned_cols=135  Identities=18%  Similarity=0.169  Sum_probs=81.8

Q ss_pred             chHHHHHHhhcCC----ChhHHHHHHHHHHHhcc----CChHHHHHHHHhCcHHHHHHhc----CCCCCcchhhHHHHHh
Q 012897          166 PALPALAQLVHSN----DEEVLTDACWALSYLSD----GTNDKIQAVIEAGVCPRLVELL----GHPSPSVLIPALRTVG  233 (454)
Q Consensus       166 ~~l~~l~~ll~~~----~~~v~~~a~~~L~~l~~----~~~~~~~~~~~~~~i~~L~~ll----~~~~~~v~~~a~~~L~  233 (454)
                      ..+..+..++.++    .+.++..++.+++++..    ..+.. ...+...+++.+...+    ...+...+...+++|+
T Consensus       393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG  471 (574)
T smart00638      393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSC-PDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG  471 (574)
T ss_pred             HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCC-ChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence            4556666776643    55677777777776653    22110 0111123455555544    3455666788899999


Q ss_pred             HhhccCccchhhhhccCChHHHHHhhc--CCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhh--cchhh
Q 012897          234 NIVTGDDFQTQCIITYGALPYLLGLLT--HSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN--AEFDI  309 (454)
Q Consensus       234 ~l~~~~~~~~~~~~~~~~l~~L~~~L~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v  309 (454)
                      |+....           .++.+...+.  ...+..+|..|+++|.+++...+..        +-+.++.++.+  .++++
T Consensus       472 N~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~Ev  532 (574)
T smart00638      472 NAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEV  532 (574)
T ss_pred             ccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHH
Confidence            987522           2334444443  2225689999999999987644443        34445666655  47889


Q ss_pred             HHHHHHHHHHh
Q 012897          310 KKEAAWAISNA  320 (454)
Q Consensus       310 ~~~a~~aL~~l  320 (454)
                      |..|+.+|...
T Consensus       533 RiaA~~~lm~t  543 (574)
T smart00638      533 RMAAVLVLMET  543 (574)
T ss_pred             HHHHHHHHHhc
Confidence            98888887655

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=92.41  E-value=4.1  Score=39.02  Aligned_cols=274  Identities=11%  Similarity=0.102  Sum_probs=123.8

Q ss_pred             CHHHHHHhhcCC---CChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChh
Q 012897           40 VVPRFVEFLMRE---DYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPR  115 (454)
Q Consensus        40 ~l~~L~~lL~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~  115 (454)
                      ++..|..++..+   .++.+.....+++..+-..-......+++ ..+..+....++ .+|..-.....+++.+.+....
T Consensus        27 ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~-~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~  105 (435)
T PF03378_consen   27 LLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQ-HLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCE  105 (435)
T ss_dssp             HHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHH-HHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-G
T ss_pred             HHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccC
Confidence            455566666553   22556666666665555443444444433 234444444455 4577777777777666532221


Q ss_pred             hH-H--HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCC-CCChhhhhchHHHHHHh-hcCCChhHHHHHHHHH
Q 012897          116 CR-D--LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP-QPPFDQVRPALPALAQL-VHSNDEEVLTDACWAL  190 (454)
Q Consensus       116 ~~-~--~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~l~~l-l~~~~~~v~~~a~~~L  190 (454)
                      .. .  .-++...++.+...| +..-.+..-++..+|+.|....+ ..........+|.+..- +-.....+ -...+.|
T Consensus       106 ~~~~~v~~~E~~L~P~f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL  183 (435)
T PF03378_consen  106 ADPEAVSQFEEALFPPFQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLL  183 (435)
T ss_dssp             GGHH---HHHHHHHHHHHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHH
Confidence            11 1  123344577777777 44445666667777777665543 11112223333333311 11111111 2222233


Q ss_pred             HHhccCChHHHHHHHHhC----cHHHHHHhcCCCCCcchhhHHHHHhHhhccCccc-hhhhhccCChHHHHHhhcCCcch
Q 012897          191 SYLSDGTNDKIQAVIEAG----VCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ-TQCIITYGALPYLLGLLTHSHKK  265 (454)
Q Consensus       191 ~~l~~~~~~~~~~~~~~~----~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~l~~L~~~L~~~~~~  265 (454)
                      ..+....+..   +...+    ++..+-.++.+..  .-..+...|..+....+.. ....+ ..++..++.-|++.+..
T Consensus       184 ~a~i~k~~~~---i~~~~~l~~iLgvFQkLi~sk~--~D~~gF~LL~~iv~~~p~~~l~~yl-~~I~~lll~RLq~skT~  257 (435)
T PF03378_consen  184 QAYIKKDPSF---IVANNQLEPILGVFQKLIASKA--NDHYGFDLLESIVENLPPEALEPYL-KQIFTLLLTRLQSSKTE  257 (435)
T ss_dssp             HHHHHHHGGG-------S-CHHHHHHHHHHHT-TT--CHHHHHHHHHHHHHHS-HHHHGGGH-HHHHHHHHHHHHHC--H
T ss_pred             HHHHHhCchh---hcchhhHHHHHHHHHHHHCCCC--cchHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHhhCCcH
Confidence            3333222221   11112    2222334444443  2255777777777655432 12222 24555666666655466


Q ss_pred             hHHHHHHHHHHHHhc-CCHHHHHHHHh---CCChHHHHHHh--hh----cchhhHHHHHHHHHHhcC
Q 012897          266 SIKKEACWTISNITA-GNRDQIQAVID---AGLVGPLVNLL--QN----AEFDIKKEAAWAISNATS  322 (454)
Q Consensus       266 ~v~~~a~~~L~nl~~-~~~~~~~~l~~---~~~i~~L~~ll--~~----~~~~v~~~a~~aL~~l~~  322 (454)
                      +..+..+..++.++. .+++..-..++   .|+...+..-+  ..    ..+.-|+.++-+++++..
T Consensus       258 kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~  324 (435)
T PF03378_consen  258 KFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLC  324 (435)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHh
Confidence            777766666666654 34444434442   44444444421  11    123345566666666654

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=92.39  E-value=2.4  Score=32.27  Aligned_cols=99  Identities=10%  Similarity=0.147  Sum_probs=65.1

Q ss_pred             chhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHH
Q 012897          306 EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQ  385 (454)
Q Consensus       306 ~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~  385 (454)
                      +...-.....=|.+++.. +......     +++.|.+-|+.+++.|+.++|.+|..++..+...            |..
T Consensus        14 ~~p~pgy~~~Eia~~t~~-s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~------------f~~   75 (122)
T cd03572          14 DEPTPGYLYEEIAKLTRK-SVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD------------FKR   75 (122)
T ss_pred             CCCCchHHHHHHHHHHHc-CHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH------------HHH
Confidence            333344444555566554 2222222     5788899999999999999999999999887532            443


Q ss_pred             HH-HHhccHHHHHHHhc--------CCCHHHHHHHHHHHHHhcCcC
Q 012897          386 LV-EEAEGLEKIENLQS--------HDNNEIYEKAVKILETYWLEE  422 (454)
Q Consensus       386 ~l-~~~g~~~~l~~l~~--------~~~~~v~~~a~~~l~~~~~~~  422 (454)
                      .+ ..+..+..+.+...        ..+..|+..|..++.-+|.++
T Consensus        76 ~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~~  121 (122)
T cd03572          76 ELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFSYS  121 (122)
T ss_pred             HHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhccC
Confidence            33 33444455555543        245679999999999988765

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.32  E-value=14  Score=37.44  Aligned_cols=315  Identities=12%  Similarity=0.081  Sum_probs=169.2

Q ss_pred             ccccCC-CHHHHHHHHHHHHHHhccCCCCcHHHH--HHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 012897            3 AGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEV--IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVI   79 (454)
Q Consensus         3 ~~L~s~-d~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   79 (454)
                      ++|++. |-.+++.+++.++....+. +-..+.+  .-.+....+.++++.-..-+.+...+..++.+.....+......
T Consensus       533 nLL~d~~D~vV~Ltt~~tlkl~vDD~-nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~  611 (978)
T KOG1993|consen  533 NLLQDQNDLVVRLTTARTLKLVVDDW-NFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYA  611 (978)
T ss_pred             HhcCccccceeehHHHHHHHHhhhhc-cCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHH
Confidence            455655 6778888888888777654 1111221  12344555666666544346677777777777653333322111


Q ss_pred             hCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhC----CChhhHHHHHhcCChHHHHHHhchh---hhhhHHHHHHHHHH
Q 012897           80 DHGAVPIFVKLLA--SPSDDVREQAVWALGNVAG----DSPRCRDLVLSQGALIPLLAQLNER---AKLSMLRNATWTLS  150 (454)
Q Consensus        80 ~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~----~~~~~~~~~~~~~~i~~l~~~l~~~---~~~~~~~~a~~~L~  150 (454)
                       ..++..+-.+-+  ++.+-+|...+.++.++..    .++.+..      .+-+++++-.+.   ++.-..+.+...-.
T Consensus       612 -~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~------fL~pVIel~~D~~sP~hv~L~EDgmeLW~  684 (978)
T KOG1993|consen  612 -STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYP------FLYPVIELSTDPSSPEHVYLLEDGMELWL  684 (978)
T ss_pred             -HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchH------HHHHHHHHhcCCCCCceeehhhhHHHHHH
Confidence             112222222222  2557788888888888862    1121111      122334443221   12234444444333


Q ss_pred             hhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc-cCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHH
Q 012897          151 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPAL  229 (454)
Q Consensus       151 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~  229 (454)
                      ....+.+.. ....-+.+|.+...++...+.++ .++..+.... -.+.. .-.....|++..+..++.+-..+-..+.+
T Consensus       685 ~~L~n~~~l-~p~ll~L~p~l~~~iE~ste~L~-t~l~Ii~sYilLd~~~-fl~~y~~~i~k~~~~~l~dvr~egl~avL  761 (978)
T KOG1993|consen  685 TTLMNSQKL-TPELLLLFPHLLYIIEQSTENLP-TVLMIISSYILLDNTV-FLNDYAFGIFKKLNDLLDDVRNEGLQAVL  761 (978)
T ss_pred             HHHhccccc-CHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHhhccHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            333333221 22235677888887775544443 3333333322 12222 22233447778888888776666677778


Q ss_pred             HHHhHhhccCccchhhhhccCChHHHHHhh-cCCcchhHHHHHHHHHHHHhcCCHHHHHHHHh-CCChHHHH--------
Q 012897          230 RTVGNIVTGDDFQTQCIITYGALPYLLGLL-THSHKKSIKKEACWTISNITAGNRDQIQAVID-AGLVGPLV--------  299 (454)
Q Consensus       230 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~--------  299 (454)
                      .++..+...++ ........++++.+..-+ ...+.|.+...-..+++.++-.+++....+++ ..-.+.++        
T Consensus       762 kiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~~li~~WI  840 (978)
T KOG1993|consen  762 KIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIAMLIGNWI  840 (978)
T ss_pred             HHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            88888876555 223344556776665544 33336777777788888887777766555542 22222333        


Q ss_pred             HHhhh-cchhhHHHHHHHHHHhcCCCCHHHH
Q 012897          300 NLLQN-AEFDIKKEAAWAISNATSGGTHEQI  329 (454)
Q Consensus       300 ~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~  329 (454)
                      .+... .+++-|+--+-++..+...+.+...
T Consensus       841 ~~~~~I~~~k~rKl~~LalsSll~t~~~~il  871 (978)
T KOG1993|consen  841 LLFDHINHPKDRKLNTLALSSLLRTNNPDIL  871 (978)
T ss_pred             HHcccCCCHHHhhHHHHHHHHHhccCCcHHH
Confidence            22222 3677777778888888877655443

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=91.83  E-value=1.1  Score=34.97  Aligned_cols=72  Identities=15%  Similarity=0.211  Sum_probs=58.6

Q ss_pred             CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhc---CCCHHHHHHHHH
Q 012897          337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS---HDNNEIYEKAVK  413 (454)
Q Consensus       337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~---~~~~~v~~~a~~  413 (454)
                      ++..|..-++++++.++..++..|..+++.+...            |...+.....+..+..+..   ..++.|+.++..
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~------------f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~  105 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKP------------FHLQVADKEFLLELVKIAKNSPKYDPKVREKALE  105 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChH------------HHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence            5778888888999999999999999999876542            6667776677777888875   468899999999


Q ss_pred             HHHHhcC
Q 012897          414 ILETYWL  420 (454)
Q Consensus       414 ~l~~~~~  420 (454)
                      ++..+..
T Consensus       106 ll~~W~~  112 (133)
T cd03561         106 LILAWSE  112 (133)
T ss_pred             HHHHHHH
Confidence            9988765

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=91.78  E-value=1.5  Score=31.89  Aligned_cols=70  Identities=20%  Similarity=0.242  Sum_probs=58.0

Q ss_pred             HcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHH
Q 012897          334 REGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVK  413 (454)
Q Consensus       334 ~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~  413 (454)
                      ...++..|+..++.+.+.....++..+..+++....              ...+.+.|+.+-+.++...-+++.+.....
T Consensus        28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a--------------~~~l~~iG~~~fL~klr~~~~~~~~~~id~   93 (98)
T PF14726_consen   28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYA--------------AQILRDIGAVRFLSKLRPNVEPNLQAEIDE   93 (98)
T ss_pred             HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHH--------------HHHHHHccHHHHHHHHHhcCCHHHHHHHHH
Confidence            345788888999988888888999999998876443              568888999999999998889999888888


Q ss_pred             HHHH
Q 012897          414 ILET  417 (454)
Q Consensus       414 ~l~~  417 (454)
                      +++.
T Consensus        94 il~~   97 (98)
T PF14726_consen   94 ILDQ   97 (98)
T ss_pred             HHhc
Confidence            8764

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=91.54  E-value=15  Score=37.08  Aligned_cols=134  Identities=17%  Similarity=0.157  Sum_probs=79.4

Q ss_pred             hHHHHHHhch---hhhhhHHHHHHHHHHhhcCCC----CCCChhhhhchHHHHHHhhc----CCChhHHHHHHHHHHHhc
Q 012897          126 LIPLLAQLNE---RAKLSMLRNATWTLSNFCRGK----PQPPFDQVRPALPALAQLVH----SNDEEVLTDACWALSYLS  194 (454)
Q Consensus       126 i~~l~~~l~~---~~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~l~~l~~ll~----~~~~~v~~~a~~~L~~l~  194 (454)
                      +..+..++..   ..+..++..++.+++.+....    +.........+++.+...|.    ..+...+...+.+|+|+.
T Consensus       395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g  474 (574)
T smart00638      395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG  474 (574)
T ss_pred             HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence            4555566532   234556777777777665422    21112223456666665553    456666778888999876


Q ss_pred             cCChHHHHHHHHhCcHHHHHHhcC-C--CCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcC-CcchhHHHH
Q 012897          195 DGTNDKIQAVIEAGVCPRLVELLG-H--PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH-SHKKSIKKE  270 (454)
Q Consensus       195 ~~~~~~~~~~~~~~~i~~L~~ll~-~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~-~~~~~v~~~  270 (454)
                      ...           .+..+..++. +  .+..+|..|+++|..++...+..        +-+.+++++.+ ..++++|..
T Consensus       475 ~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRia  535 (574)
T smart00638      475 HPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRMA  535 (574)
T ss_pred             Chh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHHH
Confidence            432           2334444443 2  34568999999999887644432        23556676654 336678888


Q ss_pred             HHHHHHHH
Q 012897          271 ACWTISNI  278 (454)
Q Consensus       271 a~~~L~nl  278 (454)
                      |+..|...
T Consensus       536 A~~~lm~t  543 (574)
T smart00638      536 AVLVLMET  543 (574)
T ss_pred             HHHHHHhc
Confidence            87777654

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=91.20  E-value=0.85  Score=32.80  Aligned_cols=74  Identities=8%  Similarity=0.070  Sum_probs=56.6

Q ss_pred             hHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHH
Q 012897          252 LPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQ  328 (454)
Q Consensus       252 l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~  328 (454)
                      +...+..+.++ .+.+|..+...|..+.....  ....-...++..+...++++++-|-.+|..+|..++...+...
T Consensus         5 ~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~v   78 (92)
T PF10363_consen    5 LQEALSDLNDP-LPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEV   78 (92)
T ss_pred             HHHHHHHccCC-CcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHH
Confidence            45567777888 88899999999999998544  1111124577788888999999999999999999988654433

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.14  E-value=18  Score=39.14  Aligned_cols=62  Identities=19%  Similarity=0.239  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 012897          350 PRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW  419 (454)
Q Consensus       350 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~  419 (454)
                      .+.....+.++.+++...-+.-.      ..+.|.....+  .+.-+.++..+.++++...|.+.+++..
T Consensus      1070 tet~~ltisgIaklf~e~fk~ll------nln~f~~vwe~--ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1070 TETSCLTISGIAKLFSENFKLLL------NLNGFLDVWEE--LLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHH------hcccHHHHHHH--HHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence            34555667777777654333222      33334444432  2556677778889999988888877754

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=91.08  E-value=1.8  Score=33.80  Aligned_cols=74  Identities=14%  Similarity=0.014  Sum_probs=60.9

Q ss_pred             ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCC--HHHHHHHHHHHHHHHHhh
Q 012897          294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPD--PRIVTVCLEGLENILKVG  367 (454)
Q Consensus       294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~--~~v~~~al~~L~~l~~~~  367 (454)
                      ++..|..-+.++++.++..|+..|-.+..++.......+.+..++..|..+++.+.  +.|+..++..+.......
T Consensus        38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f  113 (133)
T smart00288       38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF  113 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence            45567777888999999999999999999988888788888889999999888644  348888888888876644

Unpublished observations. Domain of unknown function.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=91.07  E-value=5.4  Score=40.54  Aligned_cols=164  Identities=17%  Similarity=0.116  Sum_probs=93.5

Q ss_pred             ChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCChhh---------HHHHHhcCChHHHHHHhc---hhhhhhHHHHHH
Q 012897           83 AVPIFVKLLAS----PSDDVREQAVWALGNVAGDSPRC---------RDLVLSQGALIPLLAQLN---ERAKLSMLRNAT  146 (454)
Q Consensus        83 ~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~---------~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~  146 (454)
                      .+..+..+++.    .++.++..|+.+++.+.......         .........++.+...+.   ...+.+-+..++
T Consensus       432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L  511 (618)
T PF01347_consen  432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYL  511 (618)
T ss_dssp             HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence            35556666654    45778888887777765211100         111122234666666664   234557788889


Q ss_pred             HHHHhhcCCCCCCChhhhhchHHHHHHhhcCC---ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--CC
Q 012897          147 WTLSNFCRGKPQPPFDQVRPALPALAQLVHSN---DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--PS  221 (454)
Q Consensus       147 ~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~  221 (454)
                      .+|+|+-.          ...++.+..++...   ...+|..|+++|..++...+..        +.+.++.++.+  .+
T Consensus       512 kaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~  573 (618)
T PF01347_consen  512 KALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTED  573 (618)
T ss_dssp             HHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-
T ss_pred             HHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCC
Confidence            99999854          25678888887765   6778999999999887665543        23455666644  45


Q ss_pred             CcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHH
Q 012897          222 PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWT  274 (454)
Q Consensus       222 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~  274 (454)
                      .++|.+|...|...   +|..       ..+..+...+...++.+|.......
T Consensus       574 ~EvRiaA~~~lm~~---~P~~-------~~l~~i~~~l~~E~~~QV~sfv~S~  616 (618)
T PF01347_consen  574 PEVRIAAYLILMRC---NPSP-------SVLQRIAQSLWNEPSNQVASFVYSH  616 (618)
T ss_dssp             HHHHHHHHHHHHHT------H-------HHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhc---CCCH-------HHHHHHHHHHhhCchHHHHHHHHHh
Confidence            67888887666442   2212       2355677777666566666554433

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=91.00  E-value=2.8  Score=42.65  Aligned_cols=311  Identities=16%  Similarity=0.130  Sum_probs=151.8

Q ss_pred             CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHH------Hh
Q 012897            7 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVV------ID   80 (454)
Q Consensus         7 s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~------~~   80 (454)
                      -+|..+...+++.|..++.+  ......+++.|++.+|+..=.-+   +...-...||..+.. .....+.+      +-
T Consensus       364 ~~d~~l~~~~~k~~~~l~~h--~kfa~~fv~~~gi~kll~vpr~s---~~~~g~s~cly~~~~-~q~~mervc~~p~~v~  437 (1516)
T KOG1832|consen  364 LDDSPLLPDVMKLICALAAH--RKFAAMFVERRGILKLLAVPRVS---ETFYGLSSCLYTIGS-LQGIMERVCALPLVVI  437 (1516)
T ss_pred             cccccccHHHHHHHHHHHHh--hHHHHHHHHhhhhHHHhcCCCch---hhhhhHHHHHHHHhh-hhhHHHHHhhccHHHH
Confidence            35566777888888888877  45666778888877776553221   222223345555554 22222221      22


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchh------------------hhhhHH
Q 012897           81 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER------------------AKLSML  142 (454)
Q Consensus        81 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~------------------~~~~~~  142 (454)
                      ..++..-+.+|.-....-+.++...++...... ..-+.+-..+.++.|+.++..-                  .+...-
T Consensus       438 ~~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~fr-ail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~  516 (1516)
T KOG1832|consen  438 HQVVKLAIELLDCSQDQARKNSALFFAAAFVFR-AILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMA  516 (1516)
T ss_pred             HHHHHHHHHHHhcchhhccchHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhh
Confidence            345566666665433333333332222211100 1112233345566666666210                  012233


Q ss_pred             HHHHHHHHhhcCCC-----CC-CChhhhhchHHHHHHhhcCC------ChhHHHHHHHHHHHhccCCh-------HHHHH
Q 012897          143 RNATWTLSNFCRGK-----PQ-PPFDQVRPALPALAQLVHSN------DEEVLTDACWALSYLSDGTN-------DKIQA  203 (454)
Q Consensus       143 ~~a~~~L~~l~~~~-----~~-~~~~~~~~~l~~l~~ll~~~------~~~v~~~a~~~L~~l~~~~~-------~~~~~  203 (454)
                      ...|.+|..-....     .. .......+..+..++-+...      ..+..+.+++-+-.+....+       ...+.
T Consensus       517 ~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aen  596 (1516)
T KOG1832|consen  517 FHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAEN  596 (1516)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHH
Confidence            34444554433221     00 11111122222222222211      12223334443333322222       23345


Q ss_pred             HHHhCcHHHHHHhcCCC-C-------CcchhhHHHHHhHhhccCccchhhhhc--------cCChHHHHHhhcC---Ccc
Q 012897          204 VIEAGVCPRLVELLGHP-S-------PSVLIPALRTVGNIVTGDDFQTQCIIT--------YGALPYLLGLLTH---SHK  264 (454)
Q Consensus       204 ~~~~~~i~~L~~ll~~~-~-------~~v~~~a~~~L~~l~~~~~~~~~~~~~--------~~~l~~L~~~L~~---~~~  264 (454)
                      +.+.+.+..++.+..-+ +       .+....|+.+|..+..-..-+ ..+..        ..++..++..-.-   ..+
T Consensus       597 flkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq-~~La~~~~~n~~aydGiaIiL~~a~g~~~i~D  675 (1516)
T KOG1832|consen  597 FLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQ-KALAHATLSNNRAYDGIAIILDAANGSNSIVD  675 (1516)
T ss_pred             HHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHH-HHHHHHHhhcccccCceEEEeecccccccccC
Confidence            67777788888776442 2       234455666666655433322 22221        1133333332211   116


Q ss_pred             hhHHHHHHHHHHHHhcCCHHH-----------------------------------HHHHHhCCChHHHHHHhhhcc---
Q 012897          265 KSIKKEACWTISNITAGNRDQ-----------------------------------IQAVIDAGLVGPLVNLLQNAE---  306 (454)
Q Consensus       265 ~~v~~~a~~~L~nl~~~~~~~-----------------------------------~~~l~~~~~i~~L~~ll~~~~---  306 (454)
                      +.++..|+.++.|+....|++                                   +..+...++|..|+.+++...   
T Consensus       676 pei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t  755 (1516)
T KOG1832|consen  676 PEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPT  755 (1516)
T ss_pred             HHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC
Confidence            788899999888887543211                                   111224678999999998753   


Q ss_pred             --hhhHHHHHHHHHHhcCCCC
Q 012897          307 --FDIKKEAAWAISNATSGGT  325 (454)
Q Consensus       307 --~~v~~~a~~aL~~l~~~~~  325 (454)
                        ..+|.-|+.+|.-++....
T Consensus       756 ~aD~IRalAc~~L~GLaR~~t  776 (1516)
T KOG1832|consen  756 TADCIRALACRVLLGLARDDT  776 (1516)
T ss_pred             cHHHHHHHHHHHHhccccCcH
Confidence              4689999999999998543

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.94  E-value=13  Score=37.80  Aligned_cols=306  Identities=11%  Similarity=0.071  Sum_probs=139.4

Q ss_pred             HHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHH-hhCC--CCHHHHHHHHHHHHHhhCC
Q 012897           36 IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLAS--PSDDVREQAVWALGNVAGD  112 (454)
Q Consensus        36 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~--~~~~v~~~a~~~L~~l~~~  112 (454)
                      .+.+.+..+-+-|.-.|...-|..|+..+..++...+.....++. +.++.++. ...+  .+..-+..++..+..++..
T Consensus       358 FED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~-~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik  436 (960)
T KOG1992|consen  358 FEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFS-SEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIK  436 (960)
T ss_pred             hccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHhccCCCccccccchhhhhhHHHHhh
Confidence            334445555555555552233556677777788744333333332 23444444 2233  3466667777777777643


Q ss_pred             ChhhHHHHHhc----CChHHHHH----Hhch---hhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChh
Q 012897          113 SPRCRDLVLSQ----GALIPLLA----QLNE---RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEE  181 (454)
Q Consensus       113 ~~~~~~~~~~~----~~i~~l~~----~l~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~  181 (454)
                      ....+.-+...    +.+..+..    -|.+   ...+-++..+   +..+............-.++|.++..|.++..-
T Consensus       437 ~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~a---IKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~v  513 (960)
T KOG1992|consen  437 GQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADA---IKYIYTFRNQLGKEHLMALLPRLIRFLEAESRV  513 (960)
T ss_pred             cchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcc---cceeeeecccCChHHHHHHHHHHHHhccCcchH
Confidence            22111111111    11111111    1111   1112222222   222222223344445567899999999999999


Q ss_pred             HHHHHHHHHHHhccCChH-HHHHHHHhCcHH-------HHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhc---cC
Q 012897          182 VLTDACWALSYLSDGTND-KIQAVIEAGVCP-------RLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT---YG  250 (454)
Q Consensus       182 v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~-------~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~---~~  250 (454)
                      +-.+|+.++-.+-..... ....+-...+.+       .++..++.+...--+..++++..+..-.+........   .+
T Consensus       514 vhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~  593 (960)
T KOG1992|consen  514 VHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQ  593 (960)
T ss_pred             HHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHH
Confidence            999999998776432221 111111122222       2222233332222223333333333222211111110   02


Q ss_pred             ChHHHHHhhcCCcchhHHHHHHHHHH----HHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCH
Q 012897          251 ALPYLLGLLTHSHKKSIKKEACWTIS----NITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTH  326 (454)
Q Consensus       251 ~l~~L~~~L~~~~~~~v~~~a~~~L~----nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~  326 (454)
                      ..+.+...-+++.+|..-......++    ..+..++..+..+ +...+|.+...+..+-.+.--.+...++.+......
T Consensus       594 Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~-e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~  672 (960)
T KOG1992|consen  594 LTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSL-EEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSG  672 (960)
T ss_pred             HHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            22333334456655554443333333    3333444444333 345677777777766556666666666666543321


Q ss_pred             ---HHH---------HHHH-HcCCcHHHhhccC
Q 012897          327 ---EQI---------KYLV-REGCIKPLCDLFV  346 (454)
Q Consensus       327 ---~~~---------~~l~-~~~~i~~L~~~l~  346 (454)
                         +..         +.++ ..|-+++++.+++
T Consensus       673 ~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~  705 (960)
T KOG1992|consen  673 TIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQ  705 (960)
T ss_pred             CCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHH
Confidence               111         1222 3577888777765

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=90.86  E-value=12  Score=38.02  Aligned_cols=198  Identities=15%  Similarity=0.097  Sum_probs=100.1

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhch---hhhhhHHHHHHHHHHhhcCCC-C-
Q 012897           83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE---RAKLSMLRNATWTLSNFCRGK-P-  157 (454)
Q Consensus        83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~---~~~~~~~~~a~~~L~~l~~~~-~-  157 (454)
                      .+..+..++.+....-.+ +...|..+..........     .+..+..++..   ..++.++..|+.+++.+.... . 
T Consensus       396 av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~  469 (618)
T PF01347_consen  396 AVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN  469 (618)
T ss_dssp             HHHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec
Confidence            566666666663322222 333343333222111112     24445555532   234556666776666665332 1 


Q ss_pred             --------CCChhhhhchHHHHHHhh----cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC---CC
Q 012897          158 --------QPPFDQVRPALPALAQLV----HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP---SP  222 (454)
Q Consensus       158 --------~~~~~~~~~~l~~l~~ll----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~  222 (454)
                              .........+++.+...+    ...+..-+..++.+|+|+...           ..++.+..++...   ..
T Consensus       470 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-----------~~i~~l~~~i~~~~~~~~  538 (618)
T PF01347_consen  470 SDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-----------ESIPVLLPYIEGKEEVPH  538 (618)
T ss_dssp             -----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-----------GGHHHHHTTSTTSS-S-H
T ss_pred             ccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-----------hhhHHHHhHhhhccccch
Confidence                    112222234444444444    456778888999999998531           3566777777665   56


Q ss_pred             cchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCC-cchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHH
Q 012897          223 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS-HKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNL  301 (454)
Q Consensus       223 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l  301 (454)
                      .+|..|+++|..++...+..        +.+.+++++.+. .+.++|..|..+|...-   |..       ..+..+...
T Consensus       539 ~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~---P~~-------~~l~~i~~~  600 (618)
T PF01347_consen  539 FIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLILMRCN---PSP-------SVLQRIAQS  600 (618)
T ss_dssp             HHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHHT------H-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHHHhcC---CCH-------HHHHHHHHH
Confidence            78999999999886544422        345677777543 25678888876666531   221       134445555


Q ss_pred             hhhc-chhhHHHHHH
Q 012897          302 LQNA-EFDIKKEAAW  315 (454)
Q Consensus       302 l~~~-~~~v~~~a~~  315 (454)
                      +..+ +..|......
T Consensus       601 l~~E~~~QV~sfv~S  615 (618)
T PF01347_consen  601 LWNEPSNQVASFVYS  615 (618)
T ss_dssp             HTT-S-HHHHHHHHH
T ss_pred             HhhCchHHHHHHHHH
Confidence            5443 5566554443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=90.46  E-value=16  Score=34.68  Aligned_cols=186  Identities=11%  Similarity=0.040  Sum_probs=108.7

Q ss_pred             ccCCCHHHHHHHHHHHHHHhccCCCC--cHHHHHHcCCHHHHHHhhcCCC----Ch--hHHHHHHHHHHHhcCCCchhh-
Q 012897            5 VWSDDSSLQLEATTQFRKLLSIERSP--PIEEVIQSGVVPRFVEFLMRED----YP--QLQFEAAWALTNIASGTSENT-   75 (454)
Q Consensus         5 L~s~d~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~~~l~~L~~lL~~~~----~~--~v~~~a~~~L~~l~~~~~~~~-   75 (454)
                      +...+.+-|..|+...+++..+..-.  +.+.+.+.-+.+.+-+++.+.+    .|  -.+..++.+|...|. .++.. 
T Consensus        20 ~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~-~pElAs   98 (698)
T KOG2611|consen   20 LKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR-VPELAS   98 (698)
T ss_pred             hcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC-Chhhcc
Confidence            34566778899999999998876332  3445777777888888887643    22  245566777777777 44432 


Q ss_pred             -HHHHhCCChHHHHHhhCC-CC------HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHH
Q 012897           76 -KVVIDHGAVPIFVKLLAS-PS------DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATW  147 (454)
Q Consensus        76 -~~~~~~g~i~~L~~lL~~-~~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~  147 (454)
                       +.++  +-||.|+..+.. .+      ..+.+.+..+|..+++.. .....++..|+++.+.+...-..-..-..-++.
T Consensus        99 h~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e-~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~  175 (698)
T KOG2611|consen   99 HEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAE-AGLMTLIASGGLRVIAQMYELPDGSHDMALALK  175 (698)
T ss_pred             CHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCC-chhHHHHhcCchHHHHHHHhCCCCchhHHHHHH
Confidence             2233  468999998865 22      237778888999998764 455677788999999877632111111112222


Q ss_pred             HHHhhcCCC--CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 012897          148 TLSNFCRGK--PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS  194 (454)
Q Consensus       148 ~L~~l~~~~--~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~  194 (454)
                      ++.-+...-  -.........++..+..=+...+.......|..|..+.
T Consensus       176 Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~vl  224 (698)
T KOG2611|consen  176 VLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAVL  224 (698)
T ss_pred             HHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            222221111  01111112223333333344456667777787777543

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=89.88  E-value=1.6  Score=34.01  Aligned_cols=73  Identities=12%  Similarity=0.183  Sum_probs=58.4

Q ss_pred             CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCC-C-HHHHHHHHHH
Q 012897          337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHD-N-NEIYEKAVKI  414 (454)
Q Consensus       337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~-~-~~v~~~a~~~  414 (454)
                      ++..|..-+.+++|.++..++..|..+++.+...            |...+...++++.|..+...+ + +.|++++..+
T Consensus        38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~------------f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~l  105 (133)
T smart00288       38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSK------------FHLEVASKEFLNELVKLIKPKYPLPLVKKRILEL  105 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH------------HHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            5777888888999999999999999999876442            677788888888898886553 3 3399999999


Q ss_pred             HHHhcCc
Q 012897          415 LETYWLE  421 (454)
Q Consensus       415 l~~~~~~  421 (454)
                      +..+...
T Consensus       106 i~~W~~~  112 (133)
T smart00288      106 IQEWADA  112 (133)
T ss_pred             HHHHHHH
Confidence            9887653

Unpublished observations. Domain of unknown function.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=89.84  E-value=2  Score=35.02  Aligned_cols=112  Identities=18%  Similarity=0.201  Sum_probs=77.5

Q ss_pred             CcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhc--cCChHHHHHhhcCCcchhHHHHHHHHHHHHhc---CC
Q 012897          208 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT--YGALPYLLGLLTHSHKKSIKKEACWTISNITA---GN  282 (454)
Q Consensus       208 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~---~~  282 (454)
                      ..+..+..+++++++.-|..++..+...+..++.  +.+.+  ...+..++.+|+.+..+.+++.++.++..+..   +.
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            5667788999999999999999999888876532  22323  24678899999887677889999999988875   45


Q ss_pred             HHHHHHHHhC---CChHHHHHHhhhcchhhHHHHHHHHHHhcCC
Q 012897          283 RDQIQAVIDA---GLVGPLVNLLQNAEFDIKKEAAWAISNATSG  323 (454)
Q Consensus       283 ~~~~~~l~~~---~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  323 (454)
                      ++..+++...   ++++.++.+++.  ......++.+|..+...
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~  144 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH  144 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence            5545454422   234444444443  56667777777777664

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=89.66  E-value=2.7  Score=32.77  Aligned_cols=76  Identities=8%  Similarity=-0.038  Sum_probs=62.8

Q ss_pred             ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCC---CCHHHHHHHHHHHHHHHHhhhh
Q 012897          294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC---PDPRIVTVCLEGLENILKVGEA  369 (454)
Q Consensus       294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~---~~~~v~~~al~~L~~l~~~~~~  369 (454)
                      ++..|..-++++++.++..|+..|-.+..++.......+.+..++..|+.++..   .++.|+..++..+.........
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~  116 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG  116 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            466677788889999999999999999999888777777777888889998875   4778999999999888765443

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.42  E-value=27  Score=39.29  Aligned_cols=232  Identities=17%  Similarity=0.093  Sum_probs=120.0

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHH
Q 012897           40 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRD  118 (454)
Q Consensus        40 ~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~  118 (454)
                      .+..++..+..++ |..+..+..++..++..-++ ...+  .+..+.+++-+.+ .++..|..-..+++.+-++......
T Consensus       877 ~~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~-~~f~--a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s  952 (2067)
T KOG1822|consen  877 ALTLIVNSLINPN-PKLRCAAAEALARLAQVVGS-APFV--ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGS  952 (2067)
T ss_pred             HHHHHhhhhccCC-hHHHHHHHHHHHHHHHhccc-cchH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCC
Confidence            3445566677777 88888888888888862111 1111  1234555555655 4444444333344433221111111


Q ss_pred             HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCC---hhHHHHHHHHHH----
Q 012897          119 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSND---EEVLTDACWALS----  191 (454)
Q Consensus       119 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~---~~v~~~a~~~L~----  191 (454)
                      .-.....+..++.+..++.++.|+..++.++..+...............+..+..++.+..   .++...--+++.    
T Consensus       953 ~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~ 1032 (2067)
T KOG1822|consen  953 GQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDD 1032 (2067)
T ss_pred             chhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchh
Confidence            1111223556666665666779999999999998877643445555566666666665432   122221111111    


Q ss_pred             --Hhc-------cCChH-HHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcC
Q 012897          192 --YLS-------DGTND-KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH  261 (454)
Q Consensus       192 --~l~-------~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~  261 (454)
                        ++.       ..+.. -....++...+....-++.++++-++.++..|+.++-...+....   -..++..+..++.+
T Consensus      1033 ~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1033 EDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLSS 1109 (2067)
T ss_pred             HHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhcc
Confidence              111       11110 011122223333344455667888999999999998876653211   12345556666655


Q ss_pred             CcchhHHHHHHHHHHHHh
Q 012897          262 SHKKSIKKEACWTISNIT  279 (454)
Q Consensus       262 ~~~~~v~~~a~~~L~nl~  279 (454)
                      . .--.|.....++..+.
T Consensus      1110 ~-~~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1110 S-YLILRRASFSCLRQLV 1126 (2067)
T ss_pred             h-hhhhhhhHHhhhhHHh
Confidence            5 4444444444444443

>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=89.12  E-value=1.9  Score=40.74  Aligned_cols=141  Identities=10%  Similarity=0.094  Sum_probs=78.7

Q ss_pred             CChHHHHHhhcCC---cchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCH
Q 012897          250 GALPYLLGLLTHS---HKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTH  326 (454)
Q Consensus       250 ~~l~~L~~~L~~~---~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~  326 (454)
                      .+...|..+|...   -.+.+|...+.+|.-|-..+.-     .-..++..++.++..++...|.-+..-|...+.+.+.
T Consensus        16 ~FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~~i-----~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~   90 (616)
T KOG2229|consen   16 NFPSELKDLLRTNHTVLPPELREKIVKALILLRNKNLI-----VAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINK   90 (616)
T ss_pred             hhhHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCcC-----CHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHh
Confidence            4455666676543   1567888888888776543211     1123566677788877777776555544433332111


Q ss_pred             HHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHH
Q 012897          327 EQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNE  406 (454)
Q Consensus       327 ~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~  406 (454)
                      .....-....+-..+..+|..+++.-...++..+..+.+..                  ++.++..+..+..-+-|.++.
T Consensus        91 ~~kn~klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr~------------------iW~d~~tV~i~~~acf~~~~k  152 (616)
T KOG2229|consen   91 KHKNDKLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYKRN------------------IWNDSKTVNIITTACFSKVPK  152 (616)
T ss_pred             hcccchHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhc------------------ccccchhHHHHHHHHhccCcH
Confidence            11111122233456777888888875556666666665432                  222344445555557778888


Q ss_pred             HHHHHHH
Q 012897          407 IYEKAVK  413 (454)
Q Consensus       407 v~~~a~~  413 (454)
                      |.-.+..
T Consensus       153 i~vs~l~  159 (616)
T KOG2229|consen  153 ILVSGLR  159 (616)
T ss_pred             HHHhhhH
Confidence            7655544

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=88.78  E-value=7.1  Score=34.74  Aligned_cols=156  Identities=19%  Similarity=0.195  Sum_probs=92.0

Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC--ChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCChh
Q 012897           42 PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG--AVPIFVKLLAS----PSDDVREQAVWALGNVAGDSPR  115 (454)
Q Consensus        42 ~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~  115 (454)
                      ..+.+.+..-. ++-+--++..++-++. .+.....+...+  ....+..++..    ..+..+-.++++++|+..... 
T Consensus        66 ~~~~~~~~~Wp-~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-  142 (268)
T PF08324_consen   66 ILLLKILLSWP-PESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-  142 (268)
T ss_dssp             HHHHHHHCCS--CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-
T ss_pred             HHHHHHHHhCC-CccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-
Confidence            34445544443 3445666666666666 455555554433  24444544432    567888899999999976544 


Q ss_pred             hHHHHHhcC--ChHHHHHHhchh---hhhhHHHHHHHHHHhhcCCC--CCCChhhhhchHHHHHHhhc-C-CChhHHHHH
Q 012897          116 CRDLVLSQG--ALIPLLAQLNER---AKLSMLRNATWTLSNFCRGK--PQPPFDQVRPALPALAQLVH-S-NDEEVLTDA  186 (454)
Q Consensus       116 ~~~~~~~~~--~i~~l~~~l~~~---~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~l~~ll~-~-~~~~v~~~a  186 (454)
                      .+..+....  .+...+..+...   .+..++..++.++.|++...  ..........++..+...+. . .+++....+
T Consensus       143 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~  222 (268)
T PF08324_consen  143 GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRL  222 (268)
T ss_dssp             CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHH
T ss_pred             cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHH
Confidence            455544432  222233323232   27788889999999987554  11122233446666666433 2 689999999


Q ss_pred             HHHHHHhccCChHH
Q 012897          187 CWALSYLSDGTNDK  200 (454)
Q Consensus       187 ~~~L~~l~~~~~~~  200 (454)
                      +.+++++....+..
T Consensus       223 LvAlGtL~~~~~~~  236 (268)
T PF08324_consen  223 LVALGTLLSSSDSA  236 (268)
T ss_dssp             HHHHHHHHCCSHHH
T ss_pred             HHHHHHHhccChhH
Confidence            99999999665443

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=88.63  E-value=2.3  Score=33.56  Aligned_cols=74  Identities=11%  Similarity=0.034  Sum_probs=58.7

Q ss_pred             ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCC-HH---HHHHHHHHHHHHHHhh
Q 012897          294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPD-PR---IVTVCLEGLENILKVG  367 (454)
Q Consensus       294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~-~~---v~~~al~~L~~l~~~~  367 (454)
                      ++..|..-+.++++.++..|+..|-.+..++.......+.+..++..|..++..+. ..   |+..++..+.......
T Consensus        43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f  120 (140)
T PF00790_consen   43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF  120 (140)
T ss_dssp             HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence            45567788888999999999999999999887777777777778888998777433 33   8888888888776654

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=88.61  E-value=25  Score=34.17  Aligned_cols=166  Identities=11%  Similarity=0.073  Sum_probs=115.6

Q ss_pred             hHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCC----cchhhHHHHHhHhhccCccc
Q 012897          167 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP----SVLIPALRTVGNIVTGDDFQ  242 (454)
Q Consensus       167 ~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~----~v~~~a~~~L~~l~~~~~~~  242 (454)
                      ....+...+.+++...+..++..+..++.. ......++....+..|.+++.+...    ++...++.+++.+..... .
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-v  161 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-V  161 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-e
Confidence            445677888888888777788888888755 4566778888999999999977643    455566666666655433 1


Q ss_pred             hhhhhccCChHHHHHhhcCC-cchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhc
Q 012897          243 TQCIITYGALPYLLGLLTHS-HKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT  321 (454)
Q Consensus       243 ~~~~~~~~~l~~L~~~L~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  321 (454)
                      ....+...++..+..+..-. .+..+-..|...|-++..+++...+.+.+.--+..|+..++..+..++..|...+..+.
T Consensus       162 sW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~  241 (713)
T KOG2999|consen  162 SWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF  241 (713)
T ss_pred             eeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            11222333444444443211 14457778888888888877766666677778999999999999999999888888888


Q ss_pred             CCCCHHHHHHHHH
Q 012897          322 SGGTHEQIKYLVR  334 (454)
Q Consensus       322 ~~~~~~~~~~l~~  334 (454)
                      ...+++.+..+.+
T Consensus       242 ~~a~~~~R~~~~~  254 (713)
T KOG2999|consen  242 RKAPDDKRFEMAK  254 (713)
T ss_pred             hhCChHHHHHHHH
Confidence            8777666555544

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=88.47  E-value=6.5  Score=36.46  Aligned_cols=217  Identities=19%  Similarity=0.145  Sum_probs=111.8

Q ss_pred             HHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 012897           36 IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR  115 (454)
Q Consensus        36 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  115 (454)
                      +...++..+..++....++......+.++..-+...    ..-+...++..+.+-+.+..+.+|+..+..++........
T Consensus        19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~   94 (339)
T PF12074_consen   19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN   94 (339)
T ss_pred             hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence            444567778888887665777777777776655311    1111224567777777777777999988888887641111


Q ss_pred             hHHHHHhcCChHHHHHHhchh---hhhhHH---HHHHHHHHhhcCCCCCCChhhhhchH--------HH-H--HHhhcC-
Q 012897          116 CRDLVLSQGALIPLLAQLNER---AKLSML---RNATWTLSNFCRGKPQPPFDQVRPAL--------PA-L--AQLVHS-  177 (454)
Q Consensus       116 ~~~~~~~~~~i~~l~~~l~~~---~~~~~~---~~a~~~L~~l~~~~~~~~~~~~~~~l--------~~-l--~~ll~~-  177 (454)
                      ......-...++.+++.+.+-   +-+...   ..++.++..+.... ...........        |. +  -++... 
T Consensus        95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~-~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl  173 (339)
T PF12074_consen   95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWK-LDKIDSKNISFWSLALDPKPSFLLSEKVYSKL  173 (339)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhcccc-chhhhhhhhhhhhhccCCCcchhcCHHHHhcc
Confidence            111111122466666666321   111100   11111111111110 00000000000        00 0  022223 


Q ss_pred             CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC--CCcchhhHHHHHhHhhccCccchhhhhccCChHHH
Q 012897          178 NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP--SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYL  255 (454)
Q Consensus       178 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L  255 (454)
                      .+++.....+.++..+..........-.....-..++.++.++  .+.+|..|+.++..+...++..    +...++..+
T Consensus       174 ~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l  249 (339)
T PF12074_consen  174 ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGL  249 (339)
T ss_pred             CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHH
Confidence            4555666677777776654333222111234566788888777  8899999999999998766643    333445555


Q ss_pred             HHhhcC
Q 012897          256 LGLLTH  261 (454)
Q Consensus       256 ~~~L~~  261 (454)
                      -..+..
T Consensus       250 ~~~l~~  255 (339)
T PF12074_consen  250 WKWLSS  255 (339)
T ss_pred             HHHHHh
Confidence            555543

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor

Probab=88.28  E-value=7.6  Score=39.57  Aligned_cols=152  Identities=17%  Similarity=0.198  Sum_probs=96.5

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      +..|.|.|..+...+-..+...+...+.+    +    ++..|++..-+.++    ..|+.+|..+=.  |..+      
T Consensus        10 ~~~l~s~~~~~~~~~~~~~~~~~~~~~~~----~----l~~~l~~y~~~t~s----~~~~~il~~~~~--P~~K------   69 (668)
T PF04388_consen   10 LSLLESNDLSVLEEIKALLQELLNSDREP----W----LVNGLVDYYLSTNS----QRALEILVGVQE--PHDK------   69 (668)
T ss_pred             HHHhcCCchhhHHHHHHHHHHHhhccchH----H----HHHHHHHHHhhcCc----HHHHHHHHhcCC--ccHH------
Confidence            34566777777777777777666553111    1    25556665444332    234445544322  2111      


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF  161 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  161 (454)
                      .++..|-..+.  .+..|..++..|+.+....+..-..+.+...+..|+++|..+.+..+...|+.+|..|.-.-+..-.
T Consensus        70 ~~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~  147 (668)
T PF04388_consen   70 HLFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLG  147 (668)
T ss_pred             HHHHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhh
Confidence            22344444444  4578888999999999888888888888899999999998888999999999998888755443333


Q ss_pred             hhhhchHHHHHHhh
Q 012897          162 DQVRPALPALAQLV  175 (454)
Q Consensus       162 ~~~~~~l~~l~~ll  175 (454)
                      .....++.+...++
T Consensus       148 ~~L~~Lf~If~Rl~  161 (668)
T PF04388_consen  148 PHLPDLFNIFGRLL  161 (668)
T ss_pred             HHHHHHHHHHHHHH
Confidence            34444444444444

The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=87.99  E-value=24  Score=33.23  Aligned_cols=218  Identities=16%  Similarity=0.164  Sum_probs=120.2

Q ss_pred             hhhHHHHHHHHHHhhcCCCC---CCChhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHH
Q 012897          138 KLSMLRNATWTLSNFCRGKP---QPPFDQVRPALPALAQLVHSN--DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR  212 (454)
Q Consensus       138 ~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~l~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~  212 (454)
                      +..+..+|+.+++.+..++.   .........++...+..+.++  +..+....+++|..--...     .++....+..
T Consensus        59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~-----~~~~~~~~~~  133 (372)
T PF12231_consen   59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSP-----KIMTSDRVER  133 (372)
T ss_pred             chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC-----cccchhhHHH
Confidence            67888999999999987752   122222233555555555433  4456777777776532211     1223334444


Q ss_pred             HHHhc---C--CCCCcchhhHHHHHhHhhccCccchhhhhcc-CChHHHHHhhcCCcchhHHHHHHHHHHHHhc--CCH-
Q 012897          213 LVELL---G--HPSPSVLIPALRTVGNIVTGDDFQTQCIITY-GALPYLLGLLTHSHKKSIKKEACWTISNITA--GNR-  283 (454)
Q Consensus       213 L~~ll---~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~--~~~-  283 (454)
                      ++..+   .  -+...+....+.++.++....+...  .-.. ..++.++..+-+. ...+|..|..++..+..  +.. 
T Consensus       134 l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M--~~~~~~W~~~l~~~l~~~-~k~ir~~a~~l~~~~~~~l~~~~  210 (372)
T PF12231_consen  134 LLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQM--IKHADIWFPILFPDLLSS-AKDIRTKAISLLLEAKKCLGPNK  210 (372)
T ss_pred             HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHhChhH
Confidence            44443   2  2455677888889988887555321  1112 3677777777777 66777776655544432  211 


Q ss_pred             HH---HHHHHhCCC---------hHHHHHHhhhcchhhHHHHHHHHHHhcCCCC-HHHHHHHHHcCCcHHHhhccCCCCH
Q 012897          284 DQ---IQAVIDAGL---------VGPLVNLLQNAEFDIKKEAAWAISNATSGGT-HEQIKYLVREGCIKPLCDLFVCPDP  350 (454)
Q Consensus       284 ~~---~~~l~~~~~---------i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~~~~i~~L~~~l~~~~~  350 (454)
                      ..   .....+...         .+.|..++.+++.....-=+|...-+..+.. .+.-..+  +..+.....+++++++
T Consensus       211 ~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~--n~wL~v~e~cFn~~d~  288 (372)
T PF12231_consen  211 ELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHL--NEWLKVPEKCFNSSDP  288 (372)
T ss_pred             HHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhH--hHHHHHHHHHhcCCCH
Confidence            11   112222222         2335666666333333333443333333322 1211221  2356777779999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 012897          351 RIVTVCLEGLENILK  365 (454)
Q Consensus       351 ~v~~~al~~L~~l~~  365 (454)
                      .++..|..+=..++.
T Consensus       289 ~~k~~A~~aW~~liy  303 (372)
T PF12231_consen  289 QVKIQAFKAWRRLIY  303 (372)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999988777766

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=87.57  E-value=2.6  Score=33.24  Aligned_cols=72  Identities=17%  Similarity=0.271  Sum_probs=56.3

Q ss_pred             CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhc-CCCHH---HHHHHH
Q 012897          337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS-HDNNE---IYEKAV  412 (454)
Q Consensus       337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~-~~~~~---v~~~a~  412 (454)
                      ++..|..-+.+++|.++..|+..|..+++.+...            |...+.....+..|..+.. .....   |++++.
T Consensus        43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~------------f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l  110 (140)
T PF00790_consen   43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPR------------FHREVASKEFLDELVKLIKSKKTDPETPVKEKIL  110 (140)
T ss_dssp             HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHH------------HHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHH
Confidence            5777888888899999999999999999876542            6677777778888888643 44444   899999


Q ss_pred             HHHHHhcC
Q 012897          413 KILETYWL  420 (454)
Q Consensus       413 ~~l~~~~~  420 (454)
                      .++..+-.
T Consensus       111 ~ll~~W~~  118 (140)
T PF00790_consen  111 ELLQEWAE  118 (140)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98887654

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=87.41  E-value=20  Score=41.84  Aligned_cols=269  Identities=15%  Similarity=0.171  Sum_probs=137.4

Q ss_pred             HHHhhcCCCChhHHHHHHHHHHHhcCCCchhh---HHHH--hCCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChhhH
Q 012897           44 FVEFLMREDYPQLQFEAAWALTNIASGTSENT---KVVI--DHGAVPIFVKLL-ASPSDDVREQAVWALGNVAGDSPRCR  117 (454)
Q Consensus        44 L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~---~~~~--~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~  117 (454)
                      +...+...+ ++++..+..+++.+........   ....  ....+.++..+- .++++.++......+.      ..+-
T Consensus       486 ~~~~~~~~~-~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~  558 (2341)
T KOG0891|consen  486 VDSYLEADD-SEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFD  558 (2341)
T ss_pred             HHHHHhccc-HHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc------cchh
Confidence            444555666 8999999777777665222200   0000  112233333322 2356665554444333      1111


Q ss_pred             HHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhh-chHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 012897          118 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVR-PALPALAQLVHSNDEEVLTDACWALSYLSDG  196 (454)
Q Consensus       118 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~  196 (454)
                      ......+.+..+...+ .+..-.++..+...+++++..++........ ..+..+..+..+.-..+...+..-+..+...
T Consensus       559 ~~laQ~~~lr~~~~al-~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~  637 (2341)
T KOG0891|consen  559 AQLAQPDLLRLLFIAL-HDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIIS  637 (2341)
T ss_pred             hhhcCchhHHHHHHHh-hhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHH
Confidence            2222223344444444 5556677888888888888765411111111 1111111111122222222222222222222


Q ss_pred             ChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHH
Q 012897          197 TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS  276 (454)
Q Consensus       197 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~  276 (454)
                      .+..+.... ...+..++..+.+++..+...+..+++.||...........+ ..++.+.+.+.......-|..+.++++
T Consensus       638 ~~~~i~~~v-~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~  715 (2341)
T KOG0891|consen  638 SPVLISPYV-GPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALG  715 (2341)
T ss_pred             HHHHHHhhc-CchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhh
Confidence            222222222 245566777788888889999999999999866534433444 566667777665536667788899999


Q ss_pred             HHhcCCHHHHHHHH-hCCChHHHHHHhhhc-chhhHHHHHHHHHHhcC
Q 012897          277 NITAGNRDQIQAVI-DAGLVGPLVNLLQNA-EFDIKKEAAWAISNATS  322 (454)
Q Consensus       277 nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~  322 (454)
                      ++.+...-...... ...++..+...+..+ ...++..+...++++..
T Consensus       716 ~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~  763 (2341)
T KOG0891|consen  716 QLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGA  763 (2341)
T ss_pred             hhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcc
Confidence            99864222111111 123455555555554 55667777777775544

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=87.18  E-value=4.4  Score=34.66  Aligned_cols=84  Identities=18%  Similarity=0.242  Sum_probs=61.1

Q ss_pred             cchhhHHHHHhHhhccCccchhhhhcc-------CChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHH-hCCC
Q 012897          223 SVLIPALRTVGNIVTGDDFQTQCIITY-------GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI-DAGL  294 (454)
Q Consensus       223 ~v~~~a~~~L~~l~~~~~~~~~~~~~~-------~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~  294 (454)
                      .-+..|+.+|+.++-... +...++..       .+...|..++...++.-.|+.|...|.+++.++......+. +.+.
T Consensus       139 SPqrlaLEaLcKLsV~e~-NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIEN-NVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CHHHHHHHHHHHhheecc-CcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            347789999999986432 33344433       34566777777666888999999999999997666654544 6789


Q ss_pred             hHHHHHHhhhcch
Q 012897          295 VGPLVNLLQNAEF  307 (454)
Q Consensus       295 i~~L~~ll~~~~~  307 (454)
                      |..|+.+++..+.
T Consensus       218 i~~Li~FiE~a~~  230 (257)
T PF12031_consen  218 ISHLIAFIEDAEQ  230 (257)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987543

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=87.09  E-value=3.5  Score=31.11  Aligned_cols=71  Identities=15%  Similarity=0.208  Sum_probs=52.6

Q ss_pred             CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHH------hcCCCHHHHHH
Q 012897          337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENL------QSHDNNEIYEK  410 (454)
Q Consensus       337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l------~~~~~~~v~~~  410 (454)
                      ++..|..-+.++++.++..++..|..+++.+...            |...+.....+..+.++      -...+..|+++
T Consensus        38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~------------f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k  105 (115)
T cd00197          38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER------------FHQEVASNDFAVELLKFDKSKLLGDDVSTNVREK  105 (115)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH------------HHHHHHHhHHHHHHHHhhccccccCCCChHHHHH
Confidence            5677777788889999999999999999987653            55556555555555332      13457899999


Q ss_pred             HHHHHHHhc
Q 012897          411 AVKILETYW  419 (454)
Q Consensus       411 a~~~l~~~~  419 (454)
                      +..+++.+.
T Consensus       106 ~~~l~~~w~  114 (115)
T cd00197         106 AIELVQLWA  114 (115)
T ss_pred             HHHHHHHHh
Confidence            999988764

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=86.24  E-value=9.2  Score=27.82  Aligned_cols=90  Identities=13%  Similarity=0.169  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHhccCCCCcHHHHH-HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHH
Q 012897           11 SLQLEATTQFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK   89 (454)
Q Consensus        11 ~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~   89 (454)
                      ++|..|+..+..=.... --....+. ....+..|+..++.+. +.....++..+..++. ++.....+.+-|+...|-+
T Consensus         2 EIR~RAL~~I~~Kl~~~-Li~~~dl~~~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~k   78 (98)
T PF14726_consen    2 EIRVRALESIEFKLEHG-LISEEDLVKERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSK   78 (98)
T ss_pred             hHHHHHHHHHHHHHHhc-cccHHHHccHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHH
Confidence            56777776665433322 12222233 4567888888899888 5688999999999888 7888888888898888666


Q ss_pred             hhCCCCHHHHHHHH
Q 012897           90 LLASPSDDVREQAV  103 (454)
Q Consensus        90 lL~~~~~~v~~~a~  103 (454)
                      +=..-++..+...-
T Consensus        79 lr~~~~~~~~~~id   92 (98)
T PF14726_consen   79 LRPNVEPNLQAEID   92 (98)
T ss_pred             HHhcCCHHHHHHHH
Confidence            65555555554443

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=86.00  E-value=4.8  Score=33.88  Aligned_cols=136  Identities=10%  Similarity=0.125  Sum_probs=86.5

Q ss_pred             hhHHHHHhHhhccCccchhhhhccCChHHHHHhhcC----CcchhHHHHHHHHHHHHhc-CCHHHHHHHHhCCChHHHHH
Q 012897          226 IPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH----SHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVN  300 (454)
Q Consensus       226 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~----~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~  300 (454)
                      ..|+..|.-++.+ ++.+..+++..+--.+...|..    .....+|..+..+++.+.. +++.....+....++|..++
T Consensus       118 cnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr  196 (315)
T COG5209         118 CNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR  196 (315)
T ss_pred             HHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence            3455555555554 4456667776665555555532    2245688999999999998 67777777888899999999


Q ss_pred             HhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHc--------CCcHHH-hhccCCCCHHHHHHHHHHHHHHH
Q 012897          301 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVRE--------GCIKPL-CDLFVCPDPRIVTVCLEGLENIL  364 (454)
Q Consensus       301 ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~--------~~i~~L-~~~l~~~~~~v~~~al~~L~~l~  364 (454)
                      +++.++.--+.-|+..+..+...+  ...+++...        .++..+ .++.+.....+.+.+++|-.++.
T Consensus       197 Ime~gSElSktvaifI~qkil~dD--vGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLs  267 (315)
T COG5209         197 IMELGSELSKTVAIFIFQKILGDD--VGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLS  267 (315)
T ss_pred             HHHhhhHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeec
Confidence            999988877888888888877643  333333221        111111 12333445566666666655554

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.90  E-value=52  Score=34.98  Aligned_cols=394  Identities=15%  Similarity=0.122  Sum_probs=194.4

Q ss_pred             cccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC---CCchhhHHHHh
Q 012897            4 GVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS---GTSENTKVVID   80 (454)
Q Consensus         4 ~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~---~~~~~~~~~~~   80 (454)
                      +|++.+.+++...+..+.++.+.. +++-...-+..-+|.++.-+..-. ..+|...+.+|-.-..   .-|+ +     
T Consensus       475 FLkaenkdlqaeVlnrmfkIftsh-peNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVtvvncvPe-q-----  546 (2799)
T KOG1788|consen  475 FLKAENKDLQAEVLNRMFKIFTSH-PENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVTVVNCVPE-Q-----  546 (2799)
T ss_pred             HHHhcCcchhhHHHHHHHHHhccC-hHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHhhhccCcH-H-----
Confidence            356777778888888888877664 444444455667888887777655 4666666555533222   0111 1     


Q ss_pred             CCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhh-----hhhHHHHHHHHHHhhcC
Q 012897           81 HGAVPIFVKLLASP-SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA-----KLSMLRNATWTLSNFCR  154 (454)
Q Consensus        81 ~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-----~~~~~~~a~~~L~~l~~  154 (454)
                        -+-.|+-+|+.+ +..+....+.....+.+.+..+++.+.+-|.++.|...+.++.     +..   .   .+.....
T Consensus       547 --ELlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqy---s---gvsehyd  618 (2799)
T KOG1788|consen  547 --ELLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQY---S---GVSEHYD  618 (2799)
T ss_pred             --HHHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchh---h---hHHHHhh
Confidence              123455566654 3445555556666676777778888888888887776664321     110   0   0111111


Q ss_pred             CCC-CCChhh---hhchHHHHHHhhcCCCh--hH------HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCC
Q 012897          155 GKP-QPPFDQ---VRPALPALAQLVHSNDE--EV------LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP  222 (454)
Q Consensus       155 ~~~-~~~~~~---~~~~l~~l~~ll~~~~~--~v------~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~  222 (454)
                      ..+ ...+..   ....+-.--++.++.+.  .+      ....-.+|..+..+..++...+.+..++..++.++  -++
T Consensus       619 rnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfl--ind  696 (2799)
T KOG1788|consen  619 RNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFL--IND  696 (2799)
T ss_pred             cCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEee--ech
Confidence            111 100000   00111111122222211  11      11223456666677777777777888888888877  445


Q ss_pred             cchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCc-----------chhHHHHHHHHHHHHhcCCHHHHHHHHh
Q 012897          223 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH-----------KKSIKKEACWTISNITAGNRDQIQAVID  291 (454)
Q Consensus       223 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~-----------~~~v~~~a~~~L~nl~~~~~~~~~~l~~  291 (454)
                      +.|...++++..+....+.+.    +..-+-.++..|++.-           ..........++..+..-+......+-+
T Consensus       697 ehRSslLrivscLitvdpkqv----hhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFge  772 (2799)
T KOG1788|consen  697 EHRSSLLRIVSCLITVDPKQV----HHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGE  772 (2799)
T ss_pred             HHHHHHHHHHHHHhccCcccc----cHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhc
Confidence            678888888888876555432    2233445666665521           1123334444555554333333334456


Q ss_pred             CCChHHHHHHhhh----------cchhhHHHHHHHHHH---hcCCCCHHHH-------------HHHHHcCCc-----HH
Q 012897          292 AGLVGPLVNLLQN----------AEFDIKKEAAWAISN---ATSGGTHEQI-------------KYLVREGCI-----KP  340 (454)
Q Consensus       292 ~~~i~~L~~ll~~----------~~~~v~~~a~~aL~~---l~~~~~~~~~-------------~~l~~~~~i-----~~  340 (454)
                      .+++..|...+..          +|.-+-..-...|..   ++...++.++             ..+...|++     +.
T Consensus       773 atGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~  852 (2799)
T KOG1788|consen  773 ATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERH  852 (2799)
T ss_pred             cccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHH
Confidence            6776666665532          111111111111111   1111111111             122222310     01


Q ss_pred             HhhccC-----C-CCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHH
Q 012897          341 LCDLFV-----C-PDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKI  414 (454)
Q Consensus       341 L~~~l~-----~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~  414 (454)
                      .+.++.     . ..|.+. .-..+...+++.+++...-.-++|..++..+.+-..|....|.+..-...|+++-.-..+
T Consensus       853 viqlllElalevlvppfLt-SEsaAcaeVfelednifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~l  931 (2799)
T KOG1788|consen  853 VIQLLLELALEVLVPPFLT-SESAACAEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNL  931 (2799)
T ss_pred             HHHHHHHHHHHhhCCchhh-hhHHHHHHHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHH
Confidence            111111     0 011111 112233444444443222222233566667777889999999888777777887776776


Q ss_pred             HHHhcC
Q 012897          415 LETYWL  420 (454)
Q Consensus       415 l~~~~~  420 (454)
                      ++....
T Consensus       932 leSlaR  937 (2799)
T KOG1788|consen  932 LESLAR  937 (2799)
T ss_pred             HHHHhh
Confidence            665543

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein

Probab=85.65  E-value=6.9  Score=30.82  Aligned_cols=74  Identities=14%  Similarity=0.063  Sum_probs=58.1

Q ss_pred             ChHHHHHHhhh-cchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHH-HhhccCC---CCHHHHHHHHHHHHHHHHhh
Q 012897          294 LVGPLVNLLQN-AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKP-LCDLFVC---PDPRIVTVCLEGLENILKVG  367 (454)
Q Consensus       294 ~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~-L~~~l~~---~~~~v~~~al~~L~~l~~~~  367 (454)
                      .+..|..-+.. .++.++..|+..|-.+..++.......+.+.+++.. |+.+++.   .+..|+..++..+.......
T Consensus        39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f  117 (141)
T cd03565          39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF  117 (141)
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence            34455555654 588899999999999999988888888888899987 8998873   34588999998888887544

The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=85.15  E-value=32  Score=31.89  Aligned_cols=214  Identities=11%  Similarity=0.055  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCC
Q 012897           99 REQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN  178 (454)
Q Consensus        99 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~  178 (454)
                      |.....+|..+.. .+      ....++..+..++.++.++......+.++..=+...   .......++..+.+-+.+.
T Consensus         4 r~~~~~~L~~l~~-~~------~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~k   73 (339)
T PF12074_consen    4 RVLHASMLSSLPS-SS------LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDK   73 (339)
T ss_pred             HHHHHHHHHhCCC-cc------hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCC
Confidence            4445555666543 21      222346677777777788887777777666544332   2223356777888888888


Q ss_pred             ChhHHHHHHHHHHHhccCC-hHHHHHHHHhCcHHHHHHhc----CCCCCcch---hhHHHHHhHhhccCccchhh-----
Q 012897          179 DEEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELL----GHPSPSVL---IPALRTVGNIVTGDDFQTQC-----  245 (454)
Q Consensus       179 ~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll----~~~~~~v~---~~a~~~L~~l~~~~~~~~~~-----  245 (454)
                      .+.+|..-+.+++...... ......+.. .+++.|...+    .++-+...   ..++.++..+..........     
T Consensus        74 k~~vR~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~  152 (339)
T PF12074_consen   74 KPPVRRAWLLCLGEALWESPNSDSLKFAE-PFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISF  152 (339)
T ss_pred             CCcHHHHHHHHHHHHHhhccCchHHHHHH-HHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhh
Confidence            8888888888888776510 111122222 4666666666    33332221   11222221111101000000     


Q ss_pred             --hh-cc--C--ChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc--chhhHHHHHHH
Q 012897          246 --II-TY--G--ALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDIKKEAAWA  316 (454)
Q Consensus       246 --~~-~~--~--~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~a  316 (454)
                        +. +.  .  .-+.++..+  . +++.....+.++..+..+.......-....+-..++.++-+.  .+.+|+.|..+
T Consensus       153 ~~l~~~~kps~ll~~kvyskl--~-~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~  229 (339)
T PF12074_consen  153 WSLALDPKPSFLLSEKVYSKL--A-SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSA  229 (339)
T ss_pred             hhhccCCCcchhcCHHHHhcc--C-CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence              00 00  0  012222222  2 333344445555555443222111100123455677777777  89999999999


Q ss_pred             HHHhcCCCCH
Q 012897          317 ISNATSGGTH  326 (454)
Q Consensus       317 L~~l~~~~~~  326 (454)
                      +..+......
T Consensus       230 l~~l~~~~~~  239 (339)
T PF12074_consen  230 LKKLYASNPE  239 (339)
T ss_pred             HHHHHHhChH
Confidence            9998876443

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=84.70  E-value=28  Score=30.82  Aligned_cols=177  Identities=18%  Similarity=0.159  Sum_probs=95.5

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-------hhhHHHHHhcCChHHHHHHhchhh---hhhHHHHHHHHHHhh
Q 012897           83 AVPIFVKLLASPSDDVREQAVWALGNVAGDS-------PRCRDLVLSQGALIPLLAQLNERA---KLSMLRNATWTLSNF  152 (454)
Q Consensus        83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-------~~~~~~~~~~~~i~~l~~~l~~~~---~~~~~~~a~~~L~~l  152 (454)
                      +-+.+++-+.+  ....+.++.++..+....       ...|-...-...+|.++..+.+..   .......++..|..+
T Consensus        65 lq~Ll~KGL~S--s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~  142 (262)
T PF14225_consen   65 LQPLLLKGLRS--SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQV  142 (262)
T ss_pred             HHHHHhCccCC--CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHH
Confidence            33334444433  344555666676665321       112222222233555555553222   123455666788888


Q ss_pred             cCCCCCCChhhhhchHHHHHHhhc---CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHH
Q 012897          153 CRGKPQPPFDQVRPALPALAQLVH---SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPAL  229 (454)
Q Consensus       153 ~~~~~~~~~~~~~~~l~~l~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~  229 (454)
                      +......      +.-..+..+.+   .+..+-...++..|+.-..  +.     .+...+..++.+|.++.+.++..++
T Consensus       143 a~~~~~~------~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~-----~~~~~l~~Ll~lL~n~~~w~~~~~L  209 (262)
T PF14225_consen  143 AEAQGLP------NLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PD-----HEFQILTFLLGLLENGPPWLRRKTL  209 (262)
T ss_pred             HHhCCCc------cHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--ch-----hHHHHHHHHHHHHhCCcHHHHHHHH
Confidence            8543222      11122222222   2233444555555544221  11     1224566788889888889999999


Q ss_pred             HHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897          230 RTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  280 (454)
Q Consensus       230 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~  280 (454)
                      .+|..+....+-...  ...+.+..+++++.++    ...+|..+|-+...
T Consensus       210 ~iL~~ll~~~d~~~~--~~~dlispllrlL~t~----~~~eAL~VLd~~v~  254 (262)
T PF14225_consen  210 QILKVLLPHVDMRSP--HGADLISPLLRLLQTD----LWMEALEVLDEIVT  254 (262)
T ss_pred             HHHHHHhccccCCCC--cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence            999999876554432  5556888999999877    34566666655543

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=84.64  E-value=15  Score=27.99  Aligned_cols=87  Identities=18%  Similarity=0.203  Sum_probs=59.8

Q ss_pred             HHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHc-CCcHHHhhccCCCC---
Q 012897          274 TISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVRE-GCIKPLCDLFVCPD---  349 (454)
Q Consensus       274 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~~i~~L~~~l~~~~---  349 (454)
                      =|++++..++....     .++..|.+-|+..++.|+..++.+|.+++..+++.+...+... ..|..+.+.-...|   
T Consensus        24 Eia~~t~~s~~~~~-----ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~   98 (122)
T cd03572          24 EIAKLTRKSVGSCQ-----ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLK   98 (122)
T ss_pred             HHHHHHHcCHHHHH-----HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCccc
Confidence            34455554444332     3566788888888999999999999999999988877776653 44555555444333   


Q ss_pred             -----HHHHHHHHHHHHHHHH
Q 012897          350 -----PRIVTVCLEGLENILK  365 (454)
Q Consensus       350 -----~~v~~~al~~L~~l~~  365 (454)
                           ..|+..|-.++..++.
T Consensus        99 Gd~~~~~VR~~A~El~~~if~  119 (122)
T cd03572          99 GDSLNEKVREEAQELIKAIFS  119 (122)
T ss_pred             CcchhHHHHHHHHHHHHHHhc
Confidence                 2477777777777764

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=84.58  E-value=35  Score=33.60  Aligned_cols=222  Identities=14%  Similarity=0.005  Sum_probs=119.0

Q ss_pred             CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC--C---------CCCcchhhHHHHHhHhhccCccchhh
Q 012897          177 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG--H---------PSPSVLIPALRTVGNIVTGDDFQTQC  245 (454)
Q Consensus       177 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~---------~~~~v~~~a~~~L~~l~~~~~~~~~~  245 (454)
                      +++.+|...+-..|..+...-+       +..++..|+.+..  .         .++.++...   |..++....   ..
T Consensus       248 d~~~~V~~~ae~~LKr~~~~~e-------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kI---L~~L~kS~~---Aa  314 (501)
T PF13001_consen  248 DSNSSVSDRAEDLLKRLSVSLE-------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKI---LSLLSKSVI---AA  314 (501)
T ss_pred             CCcchHHHHHHHHHhhcCCCCC-------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHH---HHHHHHhHH---HH
Confidence            3455666666666666553311       1234555555544  1         123344444   444443111   01


Q ss_pred             hhccCChHHHHHhhcCC-cchhHHHHHHHHH---HHHhcC-CHHHH---HHHHhCCChHHHHH----HhhhcchhhHHHH
Q 012897          246 IITYGALPYLLGLLTHS-HKKSIKKEACWTI---SNITAG-NRDQI---QAVIDAGLVGPLVN----LLQNAEFDIKKEA  313 (454)
Q Consensus       246 ~~~~~~l~~L~~~L~~~-~~~~v~~~a~~~L---~nl~~~-~~~~~---~~l~~~~~i~~L~~----ll~~~~~~v~~~a  313 (454)
                      -.-..++..+...+.+. .+.++|..+...+   ...... .+...   ...+..++.+.+-.    --...+...|..+
T Consensus       315 ~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~a  394 (501)
T PF13001_consen  315 TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLA  394 (501)
T ss_pred             hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHH
Confidence            11123444444444433 1446666666666   444442 23322   23344555555510    0122477899999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccH
Q 012897          314 AWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGL  393 (454)
Q Consensus       314 ~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  393 (454)
                      ..+|+.++...+.-..   .+-+++..|.+-++.+.++++..+-++|..+..........      .. ......   ..
T Consensus       395 Ye~lG~L~~~~p~l~~---~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~------~~-~~~~~~---~~  461 (501)
T PF13001_consen  395 YETLGLLAKRAPSLFS---KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDD------ED-EQKRLL---LE  461 (501)
T ss_pred             HHHHHHHHccCccccc---ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccc------hh-HHHHHH---HH
Confidence            9999999997543221   12356888888888889999999999999987765432210      00 000000   01


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhcCcCCC
Q 012897          394 EKIENLQSHDNNEIYEKAVKILETYWLEEDD  424 (454)
Q Consensus       394 ~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~  424 (454)
                      ..+.....+....++-.|.+-.+++|+.++-
T Consensus       462 ~l~~~~~~~~~~~~R~~avk~an~~fpf~d~  492 (501)
T PF13001_consen  462 LLLLSYIQSEVRSCRYAAVKYANACFPFSDV  492 (501)
T ss_pred             HHHHhhccchhHHHHHHHHHHHHHhCCccch
Confidence            1222333455566888889999999987763

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=84.42  E-value=23  Score=29.56  Aligned_cols=71  Identities=20%  Similarity=0.265  Sum_probs=55.6

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh
Q 012897           40 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC  116 (454)
Q Consensus        40 ~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  116 (454)
                      .++.++++..+++ ..++..|+..+..+....--+-     ...+|.++.+..++++.++..|...+..+....+..
T Consensus         9 yl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~   79 (187)
T PF12830_consen    9 YLKNILELCLSSD-DSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL   79 (187)
T ss_pred             HHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence            4677888888888 8999999999988876221110     136899999999999999999999999998655443

>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]

Probab=84.38  E-value=9.1  Score=35.16  Aligned_cols=73  Identities=7%  Similarity=0.038  Sum_probs=61.9

Q ss_pred             CChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccC-CCCHHHHHHHHHHHHHHHH
Q 012897          293 GLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV-CPDPRIVTVCLEGLENILK  365 (454)
Q Consensus       293 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~-~~~~~v~~~al~~L~~l~~  365 (454)
                      +.+..+.+-++..++.|...|+..+..+..++....+..+.+.++..-|..+++ ...+.|+.+.-..+.....
T Consensus        45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse  118 (462)
T KOG2199|consen   45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE  118 (462)
T ss_pred             HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence            356778888999999999999999999999988888888888899999998888 6778888877666666655

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=84.32  E-value=11  Score=37.18  Aligned_cols=175  Identities=16%  Similarity=0.095  Sum_probs=99.9

Q ss_pred             CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhc--C--------CCChhHHHHHHHHHHHhcCCCchhhH
Q 012897            7 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLM--R--------EDYPQLQFEAAWALTNIASGTSENTK   76 (454)
Q Consensus         7 s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~--~--------~~~~~v~~~a~~~L~~l~~~~~~~~~   76 (454)
                      +.+.++...|-..|.++....        -+..++..|..+..  .        +-++.+|...+..|++-..      .
T Consensus       248 d~~~~V~~~ae~~LKr~~~~~--------ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~------A  313 (501)
T PF13001_consen  248 DSNSSVSDRAEDLLKRLSVSL--------EDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI------A  313 (501)
T ss_pred             CCcchHHHHHHHHHhhcCCCC--------CCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH------H
Confidence            344566666666666655442        12234666666665  2        2236777777766665321      0


Q ss_pred             HHHhCCChHHHHHhhCCC--CHHHHHHHHHHH---HHhhCCChhhHHHHHhcCChHHHHHHhc-------hhhhhhHHHH
Q 012897           77 VVIDHGAVPIFVKLLASP--SDDVREQAVWAL---GNVAGDSPRCRDLVLSQGALIPLLAQLN-------ERAKLSMLRN  144 (454)
Q Consensus        77 ~~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L---~~l~~~~~~~~~~~~~~~~i~~l~~~l~-------~~~~~~~~~~  144 (454)
                      .-.....+..+...+.+.  +..++..++..+   .......+...-..+...+...+...+.       ...+...+..
T Consensus       314 a~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~  393 (501)
T PF13001_consen  314 ATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSL  393 (501)
T ss_pred             HhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHH
Confidence            001123444555555555  678888887777   5555433321111111111122222221       2346788999


Q ss_pred             HHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 012897          145 ATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG  196 (454)
Q Consensus       145 a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~  196 (454)
                      +..+|+.|+...+.. ....-..+..++.-|..+.++++..+-.||..++..
T Consensus       394 aYe~lG~L~~~~p~l-~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~a  444 (501)
T PF13001_consen  394 AYETLGLLAKRAPSL-FSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPA  444 (501)
T ss_pred             HHHHHHHHHccCccc-ccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHH
Confidence            999999999876433 122356777788778888999999988888888743

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein

Probab=84.08  E-value=7.8  Score=30.52  Aligned_cols=72  Identities=15%  Similarity=0.200  Sum_probs=55.3

Q ss_pred             CcHHHhhccC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHH-HHHHhcC---CCHHHHHHH
Q 012897          337 CIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEK-IENLQSH---DNNEIYEKA  411 (454)
Q Consensus       337 ~i~~L~~~l~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-l~~l~~~---~~~~v~~~a  411 (454)
                      ++..|..-+. ..++.++..++..|..+++.+...            |...+...+.+.. |.++...   .+.+|+.++
T Consensus        39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~------------fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~ki  106 (141)
T cd03565          39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHR------------FHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKV  106 (141)
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHH------------HHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHH
Confidence            4666666666 468999999999999999877643            6666777778876 7777652   356899999


Q ss_pred             HHHHHHhcC
Q 012897          412 VKILETYWL  420 (454)
Q Consensus       412 ~~~l~~~~~  420 (454)
                      ..+++.+-.
T Consensus       107 l~li~~W~~  115 (141)
T cd03565         107 LALIQAWAD  115 (141)
T ss_pred             HHHHHHHHH
Confidence            999998765

The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=83.97  E-value=29  Score=31.20  Aligned_cols=72  Identities=21%  Similarity=0.309  Sum_probs=48.7

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH-HHHHhcCChHHH----HHHhc-------hhhhhhHHHHHHHHHH
Q 012897           83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR-DLVLSQGALIPL----LAQLN-------ERAKLSMLRNATWTLS  150 (454)
Q Consensus        83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~l----~~~l~-------~~~~~~~~~~a~~~L~  150 (454)
                      ++|.++.++++.++.++..++.+|..+....+... ..+...|..+.+    ...+.       ...+..+...+.-++.
T Consensus       120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~  199 (282)
T PF10521_consen  120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL  199 (282)
T ss_pred             HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence            68999999999999999999999999986554432 124445543333    23331       1344567777777777


Q ss_pred             hhcC
Q 012897          151 NFCR  154 (454)
Q Consensus       151 ~l~~  154 (454)
                      .|+.
T Consensus       200 ~L~~  203 (282)
T PF10521_consen  200 SLLK  203 (282)
T ss_pred             HHHH
Confidence            7744

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=83.94  E-value=13  Score=33.29  Aligned_cols=71  Identities=15%  Similarity=0.240  Sum_probs=49.8

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh-HHHHhCCChHHHHH----hhC--------CCCHHHHHHHHHH
Q 012897           39 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT-KVVIDHGAVPIFVK----LLA--------SPSDDVREQAVWA  105 (454)
Q Consensus        39 ~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~L~~----lL~--------~~~~~v~~~a~~~  105 (454)
                      -++|.++.++.+.+ +.++..++.+|..+....+... ..+...|..+.+-.    ++.        .++..+...+.-+
T Consensus       119 liiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~  197 (282)
T PF10521_consen  119 LIIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA  197 (282)
T ss_pred             HHHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence            36899999999998 9999999999999997333322 33566675554444    333        2445677777777


Q ss_pred             HHHhh
Q 012897          106 LGNVA  110 (454)
Q Consensus       106 L~~l~  110 (454)
                      +..++
T Consensus       198 L~~L~  202 (282)
T PF10521_consen  198 LLSLL  202 (282)
T ss_pred             HHHHH
Confidence            77774

>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []

Probab=81.93  E-value=41  Score=30.68  Aligned_cols=169  Identities=12%  Similarity=0.095  Sum_probs=82.4

Q ss_pred             HHHHHHhhcCCC---ChhHHHHHHHHHHHhcCCCchhhHHHHhCC-----------ChHHHHHhhC------CCCHHHHH
Q 012897           41 VPRFVEFLMRED---YPQLQFEAAWALTNIASGTSENTKVVIDHG-----------AVPIFVKLLA------SPSDDVRE  100 (454)
Q Consensus        41 l~~L~~lL~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g-----------~i~~L~~lL~------~~~~~v~~  100 (454)
                      +..|+..+-..+   .-++|..|+.|+.....++++.+..+++.-           ....++..|-      +.++--.-
T Consensus        36 i~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~w  115 (312)
T PF04869_consen   36 IDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCW  115 (312)
T ss_dssp             HHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHH
T ss_pred             HHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHH
Confidence            444444433322   368999999999999998999888777521           1112333333      12232233


Q ss_pred             HHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhc----
Q 012897          101 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH----  176 (454)
Q Consensus       101 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~----  176 (454)
                      .|+.+|..+..+++..++.+.+-                          ...........    ...++.+..+|.    
T Consensus       116 fAa~il~hll~dn~~~Ke~al~V--------------------------~~~~~~~ge~~----vtliq~v~~lL~~~l~  165 (312)
T PF04869_consen  116 FAAVILMHLLRDNPEAKEQALRV--------------------------TEGDESSGEEP----VTLIQTVSELLIASLR  165 (312)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHTT----------------------------EE--STTS------EEHHHHHHHHTTT---
T ss_pred             HHHHHHHHHHhcCHHHHHHHHcc--------------------------cCCCCCCCCCc----ccHHHHHHHHHHhhhh
Confidence            45555666655555554443321                          00000001111    123333333332    


Q ss_pred             -CCChhHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhcCC-C--CCcchhhHHHHHhHhhccC
Q 012897          177 -SNDEEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLGH-P--SPSVLIPALRTVGNIVTGD  239 (454)
Q Consensus       177 -~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~-~--~~~v~~~a~~~L~~l~~~~  239 (454)
                       +.++.++..-+..|..-...++.....++.. ..++.|+..... +  +.-++--++..|+-+-..+
T Consensus       166 ~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicyef~  233 (312)
T PF04869_consen  166 RNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYEFS  233 (312)
T ss_dssp             -T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHHT-
T ss_pred             cCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHhc
Confidence             3456666666666665555666666667665 478888887533 2  3344555555565555433

p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=81.81  E-value=23  Score=33.04  Aligned_cols=135  Identities=16%  Similarity=0.066  Sum_probs=79.3

Q ss_pred             HHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhc----------CCChhHHHHHHHHHHHhccC
Q 012897          127 IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH----------SNDEEVLTDACWALSYLSDG  196 (454)
Q Consensus       127 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~----------~~~~~v~~~a~~~L~~l~~~  196 (454)
                      ..+...+.++.....+..++.++.-|+++.....-......++.|..+-+          ..+..+...++.||+|+..+
T Consensus        48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~  127 (532)
T KOG4464|consen   48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH  127 (532)
T ss_pred             HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence            34555554444455566677777777777644433344445555554432          12457889999999999999


Q ss_pred             ChHHHHHHHHhCcHHHHHHhcCCC-----CCcchhhHHHHHhHhhcc-CccchhhhhccCChHHHHHhhcC
Q 012897          197 TNDKIQAVIEAGVCPRLVELLGHP-----SPSVLIPALRTVGNIVTG-DDFQTQCIITYGALPYLLGLLTH  261 (454)
Q Consensus       197 ~~~~~~~~~~~~~i~~L~~ll~~~-----~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~~L~~  261 (454)
                      ++...+..++......+.+.+...     ...+...-++.|.-+..- .....+.+.+.++++.+.+++.+
T Consensus       128 Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led  198 (532)
T KOG4464|consen  128 SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLED  198 (532)
T ss_pred             cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhc
Confidence            888878888877777777766321     112222223333222221 22344455566777777777753

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=81.80  E-value=16  Score=30.12  Aligned_cols=77  Identities=19%  Similarity=0.235  Sum_probs=59.8

Q ss_pred             hhchHHHHHHhhcCCChhHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCcc
Q 012897          164 VRPALPALAQLVHSNDEEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF  241 (454)
Q Consensus       164 ~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  241 (454)
                      ....+|.++.-|+..+...+--|...+..+... ..+.+-.++. .++..+...|.+.++++...++.+|..++...+.
T Consensus        36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlP-qLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~  113 (183)
T PF10274_consen   36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLP-QLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM  113 (183)
T ss_pred             hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence            367889999999888888777888888777766 4444444443 6777888889999999999999999999765553

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=81.63  E-value=25  Score=28.99  Aligned_cols=71  Identities=17%  Similarity=0.203  Sum_probs=53.1

Q ss_pred             CChHHHHHhhcCCcchhHHHHHHHHHHHHhcC-CHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897          250 GALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS  322 (454)
Q Consensus       250 ~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  322 (454)
                      ..++.+++-|... +...+--|...+..+... ..+.+-.++ ..++..+...|++.++++...++.+|..++.
T Consensus        38 ~~Lpif~dGL~Et-~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~  109 (183)
T PF10274_consen   38 HYLPIFFDGLRET-EHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVT  109 (183)
T ss_pred             hHHHHHHhhhhcc-CccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            4567777777766 555666777677666654 555555555 4578888899999999999999999999954

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised

Probab=81.20  E-value=17  Score=34.98  Aligned_cols=81  Identities=20%  Similarity=0.292  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHH
Q 012897           10 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK   89 (454)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~   89 (454)
                      ...|..|+++|..+++.-..+....+.+    +.|+.+|+++. ..=|..|+.++...+...........-..+.+.|..
T Consensus       101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~s-a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~  175 (441)
T PF12054_consen  101 IRARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPS-ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE  175 (441)
T ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchh-HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence            3568899999999998864444443322    26889999988 677788888888887632221111101234566777


Q ss_pred             hhCCCC
Q 012897           90 LLASPS   95 (454)
Q Consensus        90 lL~~~~   95 (454)
                      .|.++.
T Consensus       176 ~L~~~~  181 (441)
T PF12054_consen  176 ILENPE  181 (441)
T ss_pred             HHcCCC
Confidence            777443

This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.

>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []

Probab=81.19  E-value=43  Score=30.51  Aligned_cols=158  Identities=11%  Similarity=0.069  Sum_probs=94.0

Q ss_pred             chHHHHHHhh-cCC---ChhHHHHHHHHHHHhccCChHHHHHHHHhC-----------cHHHHHHhcCCC------CCcc
Q 012897          166 PALPALAQLV-HSN---DEEVLTDACWALSYLSDGTNDKIQAVIEAG-----------VCPRLVELLGHP------SPSV  224 (454)
Q Consensus       166 ~~l~~l~~ll-~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-----------~i~~L~~ll~~~------~~~v  224 (454)
                      .++..|+.+. ...   .-.+|.+|+.|+.....++++....++..-           ....++..|-+.      ++--
T Consensus        34 pvi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~  113 (312)
T PF04869_consen   34 PVIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYR  113 (312)
T ss_dssp             EHHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHH
T ss_pred             cHHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHH
Confidence            4444454443 222   467889999999998887776666555431           111244444322      2223


Q ss_pred             hhhHHHHHhHhhccCccchhhhhcc------------CChHHHHHhhcC----CcchhHHHHHHHHHHHHhcCCHHHHHH
Q 012897          225 LIPALRTVGNIVTGDDFQTQCIITY------------GALPYLLGLLTH----SHKKSIKKEACWTISNITAGNRDQIQA  288 (454)
Q Consensus       225 ~~~a~~~L~~l~~~~~~~~~~~~~~------------~~l~~L~~~L~~----~~~~~v~~~a~~~L~nl~~~~~~~~~~  288 (454)
                      ..-|+.+|..+...++..++.+..-            ..++.+..+|..    ..++.++..-+..|+-...+++..+..
T Consensus       114 ~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~  193 (312)
T PF04869_consen  114 CWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVND  193 (312)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHH
Confidence            4457788888888777665544321            134556665543    336777777788888888889999999


Q ss_pred             HHhC-CChHHHHHHhhh---cchhhHHHHHHHHHHhcCC
Q 012897          289 VIDA-GLVGPLVNLLQN---AEFDIKKEAAWAISNATSG  323 (454)
Q Consensus       289 l~~~-~~i~~L~~ll~~---~~~~v~~~a~~aL~~l~~~  323 (454)
                      ++.. ..++.|++....   .+.-|+.-++..|+-+...
T Consensus       194 FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicyef  232 (312)
T PF04869_consen  194 FLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYEF  232 (312)
T ss_dssp             HHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHh
Confidence            9865 479999997543   2566777777777666553

p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.63  E-value=96  Score=34.14  Aligned_cols=96  Identities=15%  Similarity=0.092  Sum_probs=59.0

Q ss_pred             CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc------hhhhhhHHHHHHHHHHhhcCCC-CCCChhhhhc
Q 012897           94 PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN------ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRP  166 (454)
Q Consensus        94 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~------~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~  166 (454)
                      +-.+++...+.++.++....-+   .+.. + -+.+.+.+.      ......+.+.+..+|.-++.+. +........+
T Consensus       854 ~~~evr~~sl~~l~silet~ge---~ll~-~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~  928 (1610)
T KOG1848|consen  854 RGVEVRISSLEALVSILETVGE---HLLH-G-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILD  928 (1610)
T ss_pred             ccceeeHHHHHHHHHHHhccch---hhcc-c-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHH
Confidence            5567777777888877643221   1211 1 333444432      1234567888888888888876 5556666677


Q ss_pred             hHHHHHHhhcC-CChhHHHHHHHHHHHhc
Q 012897          167 ALPALAQLVHS-NDEEVLTDACWALSYLS  194 (454)
Q Consensus       167 ~l~~l~~ll~~-~~~~v~~~a~~~L~~l~  194 (454)
                      ++..+..+-+. .|-.+--.|+..+.+++
T Consensus       929 lidtl~~fs~QktdlNISltAi~lfWtvs  957 (1610)
T KOG1848|consen  929 LIDTLLVFSRQKTDLNISLTAIGLFWTVS  957 (1610)
T ss_pred             HHHHHHHHHhhhccccccHHHHHHHHHHH
Confidence            77777777653 46666666666666655

>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor

Probab=80.41  E-value=20  Score=36.70  Aligned_cols=64  Identities=17%  Similarity=0.131  Sum_probs=54.2

Q ss_pred             CCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHH
Q 012897          221 SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD  284 (454)
Q Consensus       221 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~  284 (454)
                      .+..|..++..|+.++...+.....+.+..++..|+++|..+.+..+...|+.+|..+.-.-+.
T Consensus        81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~  144 (668)
T PF04388_consen   81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPS  144 (668)
T ss_pred             CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccc
Confidence            4568999999999999988888888999999999999998876777888888888888764443

The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].

>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=80.34  E-value=68  Score=32.25  Aligned_cols=282  Identities=12%  Similarity=0.110  Sum_probs=144.0

Q ss_pred             cCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChH
Q 012897            6 WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVP   85 (454)
Q Consensus         6 ~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~   85 (454)
                      .+.|+..|..|-++|..+..+  ++.         +..-.-++.+++.|--+..|..+|.++..... ....--..++-.
T Consensus        16 ~s~D~~~R~~AE~~L~e~s~s--pec---------lskCqlll~~gs~pYs~mlAst~L~Klvs~~t-~lpl~qrldir~   83 (1082)
T KOG1410|consen   16 ESTDPTARHRAEKALAELSES--PEC---------LSKCQLLLERGSYPYSQMLASTCLMKLVSRKT-PLPLEQRLDIRN   83 (1082)
T ss_pred             hcCCHHHHHHHHHHHHHHccC--HHH---------HHHHHHHHHcCCCchHHHHHHHHHHHHHcCCC-CCcHHHHHHHHH
Confidence            467899999999999988755  332         33344556677667888889999998887332 111112224456


Q ss_pred             HHHHhhCCCCHH----HHHHHHHHHHHhhCCCh--hhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC---
Q 012897           86 IFVKLLASPSDD----VREQAVWALGNVAGDSP--RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK---  156 (454)
Q Consensus        86 ~L~~lL~~~~~~----v~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~---  156 (454)
                      .++..+....|+    +....+..++.+....-  ..+....-.+.+..+.+.+ +..+.+--.-++.+|..|..+-   
T Consensus        84 Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl-~~~~ve~~~igv~iLsqLvqemN~~  162 (1082)
T KOG1410|consen   84 YILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFL-QMDNVEHCIIGVQILSQLVQEMNQA  162 (1082)
T ss_pred             HHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHh-ccCchHHHHHHHHHHHHHHHHhhCC
Confidence            777777764443    34444455555553211  1111112223456666666 3333333344445555554321   


Q ss_pred             -CCCCh------------hhhhchHHHHHHhhcCC-----Chh----HHHHHHHHHHHhc------cC------------
Q 012897          157 -PQPPF------------DQVRPALPALAQLVHSN-----DEE----VLTDACWALSYLS------DG------------  196 (454)
Q Consensus       157 -~~~~~------------~~~~~~l~~l~~ll~~~-----~~~----v~~~a~~~L~~l~------~~------------  196 (454)
                       +....            .....++..-..+|+..     +++    +...++..-.+..      ..            
T Consensus       163 ~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEssed~ctVQ  242 (1082)
T KOG1410|consen  163 DGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDESSEDLCTVQ  242 (1082)
T ss_pred             CCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhcccccccccccccccccccee
Confidence             00000            01122233333333321     111    2222222211111      00            


Q ss_pred             -ChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhcc-----CccchhhhhccCChHHHHHhhcCCc---chhH
Q 012897          197 -TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG-----DDFQTQCIITYGALPYLLGLLTHSH---KKSI  267 (454)
Q Consensus       197 -~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~~~~~~~l~~L~~~L~~~~---~~~v  267 (454)
                       ...-...+.+...++.+..+..+-.+.....++.||..++.-     +...+...+. ..+.-...++.++.   ++.-
T Consensus       243 IPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~-~Lv~Gvk~il~np~~LsD~~n  321 (1082)
T KOG1410|consen  243 IPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQ-HLVEGVKRILENPQGLSDPAN  321 (1082)
T ss_pred             cCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHhCCcCCCCcch
Confidence             011122355667788888888888889999999999999852     1111111111 22333334444431   4455


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhh
Q 012897          268 KKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQ  303 (454)
Q Consensus       268 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~  303 (454)
                      -.+-|..|+.+-.  .-+..+++.....+.+++++.
T Consensus       322 yHeFCRllaRlkt--NYQL~ELv~v~~Y~e~irLiA  355 (1082)
T KOG1410|consen  322 YHEFCRLLARLKT--NYQLGELVKVECYPEVIRLIA  355 (1082)
T ss_pred             HHHHHHHHHHHHh--hhhhHhhhccCCcHHHHHHHH
Confidence            5667777777643  233445666666676776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	454
4b8j_A	528	Rimp_alpha1a Length = 528		0.0
2yns_A	490	Rimp_alpha_b54nls Length = 490		0.0
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		1e-136
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		1e-136
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		1e-134
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		1e-133
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-133
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		2e-12
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		1e-132
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		2e-12
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		1e-132
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		2e-12
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		1e-132
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		2e-12
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-131
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		2e-12
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		1e-118
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		1e-118
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		1e-118
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		1e-118
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		1e-118
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		1e-118
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		1e-117
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		1e-117
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		1e-117
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		1e-117
1ial_A	453	Importin Alpha, Mouse Length = 453		1e-117
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		1e-117
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		1e-117
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		1e-117
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		1e-117
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		1e-116
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		2e-40
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		6e-34
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		8e-33
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		4e-32
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		2e-30
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		1e-28
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		3e-24
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		3e-23
3t7u_A	378	A New Crytal Structure Of Apc-Arm Length = 378		1e-04
3qhe_A	337	Crystal Structure Of The Complex Between The Armadi		1e-04
3nmx_A	354	Crystal Structure Of Apc Complexed With Asef Length		1e-04
2z6h_A	644	Crystal Structure Of Beta-Catenin Armadillo Repeat		2e-04
2z6g_A	780	Crystal Structure Of A Full-Length Zebrafish Beta-C		2e-04
3nmz_A	458	Crytal Structure Of Apc Complexed With Asef Length		2e-04
2gl7_A	550	Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX		3e-04
3ouw_A	540	Structure Of Beta-Catenin With Lef-1 Length = 540		3e-04
1jpw_A	540	Crystal Structure Of A Human Tcf-4 BETA-Catenin Com		3e-04
1i7x_A	538	Beta-CateninE-Cadherin Complex Length = 538		4e-04
1t08_A	519	Crystal Structure Of Beta-CateninICAT HELICAL Domai		4e-04
2bct_A	516	The Armadillo Repeat Region From Murine Beta-Cateni		4e-04
4djs_A	518	Structure Of Beta-Catenin In Complex With A Stapled		4e-04
1jdh_A	529	Crystal Structure Of Beta-Catenin And Htcf-4 Length		4e-04
1qz7_A	533	Beta-Catenin Binding Domain Of Axin In Complex With		4e-04
1g3j_A	532	Crystal Structure Of The Xtcf3-CbdBETA-Catenin Arma		4e-04
3tx7_A	527	Crystal Structure Of Lrh-1BETA-Catenin Complex Leng		4e-04
3au3_A	344	Crystal Structure Of Armadillo Repeat Domain Of Apc		5e-04
1luj_A	514	Crystal Structure Of The Beta-CateninICAT COMPLEX L		5e-04
3nmw_A	354	Crytal Structure Of Armadillo Repeats Domain Of Apc		5e-04

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/429 (85%), Positives = 399/429 (93%), Gaps = 2/429 (0%)
Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           M+ GV+SDD++LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFV+FL RED+PQLQFEA
Sbjct: 79  MIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEA 138
Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTSENTKVVIDHGAVPIFVKLL S SDDVREQAVWALGNVAGDSP+CRDLV
Sbjct: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLV 198
Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 180
           L+ GAL+PLLAQLNE  KLSMLRNATWTLSNFCRGKPQP F+Q RPALPALA+L+HSNDE
Sbjct: 199 LANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDE 258
Query: 181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240
           EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPALRTVGNIVTGDD
Sbjct: 259 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDD 318
Query: 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 300
            QTQCII + ALP LL LLT + KKSIKKEACWTISNITAGN+DQIQAVI+AG++GPLVN
Sbjct: 319 AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVN 378
Query: 301 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL 360
           LLQ AEFDIKKEAAWAISNATSGG+H+QIKYLV EGCIKPLCDL +CPD RIVTVCLEGL
Sbjct: 379 LLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGL 438
Query: 361 ENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 420
           ENILKVGE +K +  A  DVN ++Q+++EAEGLEKIENLQSHDNNEIYEKAVKILE YW+
Sbjct: 439 ENILKVGETDKTL--AAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 496
Query: 421 EEDDETIAA 429
           +E+D+T+ A
Sbjct: 497 DEEDDTMGA 505

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/429 (85%), Positives = 399/429 (93%), Gaps = 2/429 (0%)
Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           M+ GV+SDD++LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFV+FL RED+PQLQFEA
Sbjct: 41  MIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEA 100
Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTSENTKVVIDHGAVPIFVKLL S SDDVREQAVWALGNVAGDSP+CRDLV
Sbjct: 101 AWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLV 160
Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 180
           L+ GAL+PLLAQLNE  KLSMLRNATWTLSNFCRGKPQP F+Q RPALPALA+L+HSNDE
Sbjct: 161 LANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDE 220
Query: 181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240
           EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPALRTVGNIVTGDD
Sbjct: 221 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDD 280
Query: 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 300
            QTQCII + ALP LL LLT + KKSIKKEACWTISNITAGN+DQIQAVI+AG++GPLVN
Sbjct: 281 AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVN 340
Query: 301 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL 360
           LLQ AEFDIKKEAAWAISNATSGG+H+QIKYLV EGCIKPLCDL +CPD RIVTVCLEGL
Sbjct: 341 LLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGL 400
Query: 361 ENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 420
           ENILKVGE +K +  A  DVN ++Q+++EAEGLEKIENLQSHDNNEIYEKAVKILE YW+
Sbjct: 401 ENILKVGETDKTL--AAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 458
Query: 421 EEDDETIAA 429
           +E+D+T+ A
Sbjct: 459 DEEDDTMGA 467

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score =  481 bits (1239), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 260/429 (60%), Positives = 313/429 (72%), Gaps = 7/429 (1%)
Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQFE 59
           M+  ++S     QL AT +FRKLLS E +PPI+EVI + GVV RFVEFL R++   LQFE
Sbjct: 22  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 81
Query: 60  AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 119
           +AW LTNIASG S  T++VI  GAVPIF++LL+S  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 82  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 141
Query: 120 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP-FDQVRPALPALAQLVHSN 178
           VL    L PLL   +++ +L+M RNA W LSN CRGK  PP F +V P L  L+ L+  +
Sbjct: 142 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 201
Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
           D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H    V+ PALR VGNIVTG
Sbjct: 202 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 261
Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
           DD QTQ I+   AL   L  L  S K+SIKKEACWTISNITAGNR QIQ VIDA +   L
Sbjct: 262 DDIQTQVILNCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 320
Query: 299 VNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE 358
           +++LQ AEF  +KEAAWAI+NATSGG+ EQIKYLV  GCIKPLCDL    D +IV V L 
Sbjct: 321 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 380
Query: 359 GLENILKVGEAE-KNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILET 417
           GLENIL++GE E K  GT    +N Y  L+EEA GL+KIE LQSH+N EIY+KA  ++E 
Sbjct: 381 GLENILRLGEQEAKRNGTG---INPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 437
Query: 418 YWLEEDDET 426
           Y+  ED+++
Sbjct: 438 YFGTEDEDS 446

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score =  481 bits (1238), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 260/429 (60%), Positives = 313/429 (72%), Gaps = 7/429 (1%)
Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQFE 59
           M+  ++S     QL AT +FRKLLS E +PPI+EVI + GVV RFVEFL R++   LQFE
Sbjct: 25  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 60  AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 119
           +AW LTNIASG S  T++VI  GAVPIF++LL+S  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 85  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 120 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP-FDQVRPALPALAQLVHSN 178
           VL    L PLL   +++ +L+M RNA W LSN CRGK  PP F +V P L  L+ L+  +
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
           D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H    V+ PALR VGNIVTG
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264
Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
           DD QTQ I+   AL   L  L  S K+SIKKEACWTISNITAGNR QIQ VIDA +   L
Sbjct: 265 DDIQTQVILNCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323
Query: 299 VNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE 358
           +++LQ AEF  +KEAAWAI+NATSGG+ EQIKYLV  GCIKPLCDL    D +IV V L 
Sbjct: 324 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 383
Query: 359 GLENILKVGEAE-KNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILET 417
           GLENIL++GE E K  GT    +N Y  L+EEA GL+KIE LQSH+N EIY+KA  ++E 
Sbjct: 384 GLENILRLGEQEAKRNGTG---INPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 440
Query: 418 YWLEEDDET 426
           Y+  ED+++
Sbjct: 441 YFGTEDEDS 449

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score =  475 bits (1222), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 258/435 (59%), Positives = 316/435 (72%), Gaps = 12/435 (2%)
Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-LQFE 59
           M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR VEF MRE+ P+ LQ E
Sbjct: 92  MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLE 150
Query: 60  AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 119
           AAWALTNIASGTS  TKVV+D  AVP+F++LL + S +V+EQA+WALGNVAGDS   RD 
Sbjct: 151 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 210
Query: 120 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQLVHSN 178
           VL   A+ P+L   N   K S++R ATWTLSN CRG KPQP +  V  ALP LA+L++S 
Sbjct: 211 VLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 269
Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
           D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGNIVTG
Sbjct: 270 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 329
Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
           +D QTQ +I  G LP  L LL  S K++IKKEACWTISNITAGN +QIQAVIDA L+ PL
Sbjct: 330 NDLQTQVVINAGVLP-ALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 388
Query: 299 VNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRIVTVC 356
           V LL+ AE+  KKEA WAISNA+SGG    + I+YLV +GCIKPLCDL    D RI+ V 
Sbjct: 389 VKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 448
Query: 357 LEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILE 416
           L+ LENILK+GEA+K       ++N+ A  +E+A G+EKI N Q ++N++IYEKA KI+E
Sbjct: 449 LDALENILKMGEADKE--ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 506
Query: 417 TYWLEED---DETIA 428
           TY+ EE+   DET+A
Sbjct: 507 TYFGEEEDAVDETMA 521

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score =  471 bits (1213), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 264/460 (57%), Positives = 323/460 (70%), Gaps = 17/460 (3%)
Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-LQFE 59
           M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR VEF MRE+ P+ LQ E
Sbjct: 5   MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLE 63
Query: 60  AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 119
           AAWALTNIASGTS  TKVV+D  AVP+F++LL + S +V+EQA+WALGNVAGDS   RD 
Sbjct: 64  AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 123
Query: 120 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQLVHSN 178
           VL   A+ P+L   N   K S++R ATWTLSN CRG KPQP +  V  ALP LA+L++S 
Sbjct: 124 VLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 182
Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
           D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGNIVTG
Sbjct: 183 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 242
Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
           +D QTQ +I  G LP  L LL  S K++IKKEACWTISNITAGN +QIQAVIDA L+ PL
Sbjct: 243 NDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 301
Query: 299 VNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRIVTVC 356
           V LL+ AE   KKEA WAISNA+SGG    + I+YLV +GCIKPLCDL    D RI+ V 
Sbjct: 302 VKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 361
Query: 357 LEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILE 416
           L+ LENILK+GEA+K       ++N+ A  +E+A G+EKI N Q ++N++IYEKA KI+E
Sbjct: 362 LDALENILKMGEADKE--ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 419
Query: 417 TYWLEED---DETIAAGDGPQPGFPYAGNEVQVPSGGFNF 453
           TY+ EE+   DET+A  +     F +  N  Q     FNF
Sbjct: 420 TYFGEEEDAVDETMAPQNAGNT-FGFGSNVNQ----QFNF 454

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score =  471 bits (1212), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 258/435 (59%), Positives = 315/435 (72%), Gaps = 12/435 (2%)
Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-LQFE 59
           M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR VEF MRE+ P+ LQ E
Sbjct: 5   MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLE 63
Query: 60  AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 119
           AAWALTNIASGTS  TKVV+D  AVP+F++LL + S +V+EQA+WALGNVAGDS   RD 
Sbjct: 64  AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 123
Query: 120 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQLVHSN 178
           VL   A+ P+L   N   K S++R ATWTLSN CRG KPQP +  V  ALP LA+L++S 
Sbjct: 124 VLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 182
Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
           D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGNIVTG
Sbjct: 183 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 242
Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
           +D QTQ +I  G LP  L LL  S K++IKKEACWTISNITAGN +QIQAVIDA L+ PL
Sbjct: 243 NDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 301
Query: 299 VNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRIVTVC 356
           V LL+ AE   KKEA WAISNA+SGG    + I+YLV +GCIKPLCDL    D RI+ V 
Sbjct: 302 VKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 361
Query: 357 LEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILE 416
           L+ LENILK+GEA+K       ++N+ A  +E+A G+EKI N Q ++N++IYEKA KI+E
Sbjct: 362 LDALENILKMGEADKE--ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 419
Query: 417 TYWLEED---DETIA 428
           TY+ EE+   DET+A
Sbjct: 420 TYFGEEEDAVDETMA 434

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 3/158 (1%)
Query: 168 LPALAQLVHSND-EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVL- 225
           LP + Q ++S+D +E L+        LS      I  VI+AGV PRLVE +    P +L 
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 226 IPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 285
           + A   + NI +G   QT+ ++   A+P  + LL ++    +K++A W + N+   + D 
Sbjct: 62  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 286 IQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSG 323
              V+    + P++ L  + +  + + A W +SN   G
Sbjct: 121 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 158

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score =  468 bits (1205), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 252/423 (59%), Positives = 308/423 (72%), Gaps = 9/423 (2%)
Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-LQFE 59
           M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR VEF MRE+ P+ LQ E
Sbjct: 4   MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLE 62
Query: 60  AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 119
           AAWALTNIASGTS  TKVV+D  AVP+F++LL + S +V+EQA+WALGNVAGDS   RD 
Sbjct: 63  AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 122
Query: 120 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQLVHSN 178
           VL   A+ P+L   N   K S++R ATWTLSN CRG KPQP +  V  ALP LA+L++S 
Sbjct: 123 VLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 181
Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
           D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGNIVTG
Sbjct: 182 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 241
Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
           +D QTQ +I  G LP  L LL  S K++IKKEACWTISNITAGN +QIQAVIDA L+ PL
Sbjct: 242 NDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 300
Query: 299 VNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRIVTVC 356
           V LL+ AE+  KKEA WAISNA+SGG    + I+YLV +GCIKPLCDL    D RI+ V 
Sbjct: 301 VKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 360
Query: 357 LEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILE 416
           L+ LENILK+GEA+K       ++N+ A  +E+A G+EKI N Q ++N++IYEKA KI+E
Sbjct: 361 LDALENILKMGEADKE--ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 418
Query: 417 TYW 419
           TY+
Sbjct: 419 TYF 421

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 3/158 (1%)
Query: 168 LPALAQLVHSND-EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVL- 225
           LP + Q ++S+D +E L+        LS      I  VI+AGV PRLVE +    P +L 
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 226 IPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 285
           + A   + NI +G   QT+ ++   A+P  + LL ++    +K++A W + N+   + D 
Sbjct: 61  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 286 IQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSG 323
              V+    + P++ L  + +  + + A W +SN   G
Sbjct: 120 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 157

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score =  468 bits (1203), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 251/423 (59%), Positives = 308/423 (72%), Gaps = 9/423 (2%)
Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-LQFE 59
           M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR VEF MRE+ P+ LQ E
Sbjct: 4   MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLE 62
Query: 60  AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 119
           AAWALTNIASGTS  TKVV+D  AVP+F++LL + S +V+EQA+WALGNVAGDS   RD 
Sbjct: 63  AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 122
Query: 120 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQLVHSN 178
           VL   A+ P+L   N   K S++R ATWTLSN CRG KPQP +  V  ALP LA+L++S 
Sbjct: 123 VLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 181
Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
           D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGNIVTG
Sbjct: 182 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 241
Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
           +D QTQ +I  G LP  L LL  S K++IKKEACWTISNITAGN +QIQAVIDA L+ PL
Sbjct: 242 NDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 300
Query: 299 VNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRIVTVC 356
           V LL+ AE+  KKEA WAISNA+SGG    + I+YLV +GCIKPLCDL    D RI+ V 
Sbjct: 301 VKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 360
Query: 357 LEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILE 416
           L+ LENI+K+GEA+K       ++N+ A  +E+A G+EKI N Q ++N++IYEKA KI+E
Sbjct: 361 LDALENIIKMGEADKE--ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 418
Query: 417 TYW 419
           TY+
Sbjct: 419 TYF 421

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 3/158 (1%)
Query: 168 LPALAQLVHSND-EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVL- 225
           LP + Q ++S+D +E L+        LS      I  VI+AGV PRLVE +    P +L 
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 226 IPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 285
           + A   + NI +G   QT+ ++   A+P  + LL ++    +K++A W + N+   + D 
Sbjct: 61  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 286 IQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSG 323
              V+    + P++ L  + +  + + A W +SN   G
Sbjct: 120 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 157

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score =  466 bits (1200), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 252/423 (59%), Positives = 307/423 (72%), Gaps = 9/423 (2%)
Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-LQFE 59
           M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR VEF MRE+ P+ LQ E
Sbjct: 6   MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLE 64
Query: 60  AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 119
           AAWALTNIASGTS  TKVV+D  AVP+F++LL + S +V+EQA+WALGNVAGDS   RD 
Sbjct: 65  AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 124
Query: 120 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQLVHSN 178
           VL   A+ P+L   N   K S++R ATWTLSN CRG KPQP +  V  ALP LA+L++S 
Sbjct: 125 VLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 183
Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
           D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGNIVTG
Sbjct: 184 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 243
Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
           +D QTQ +I  G LP  L LL  S K++IKKEACWTISNITAGN +QIQAVIDA L+ PL
Sbjct: 244 NDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 302
Query: 299 VNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRIVTVC 356
           V LL+ AE   KKEA WAISNA+SGG    + I+YLV +GCIKPLCDL    D RI+ V 
Sbjct: 303 VKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 362
Query: 357 LEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILE 416
           L+ LENILK+GEA+K       ++N+ A  +E+A G+EKI N Q ++N++IYEKA KI+E
Sbjct: 363 LDALENILKMGEADKE--ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 420
Query: 417 TYW 419
           TY+
Sbjct: 421 TYF 423

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 3/158 (1%)
Query: 168 LPALAQLVHSND-EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVL- 225
           LP + Q ++S+D +E L+        LS      I  VI+AGV PRLVE +    P +L 
Sbjct: 3   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 62
Query: 226 IPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 285
           + A   + NI +G   QT+ ++   A+P  + LL ++    +K++A W + N+   + D 
Sbjct: 63  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 286 IQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSG 323
              V+    + P++ L  + +  + + A W +SN   G
Sbjct: 122 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 159

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score =  466 bits (1199), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 252/423 (59%), Positives = 307/423 (72%), Gaps = 9/423 (2%)
Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-LQFE 59
           M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR VEF MRE+ P+ LQ E
Sbjct: 6   MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLE 64
Query: 60  AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 119
           AAWALTNIASGTS  TKVV+D  AVP+F++LL + S +V+EQA+WALGNVAGDS   RD 
Sbjct: 65  AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 124
Query: 120 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQLVHSN 178
           VL   A+ P+L   N   K S++R ATWTLSN CRG KPQP +  V  ALP LA+L++S 
Sbjct: 125 VLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 183
Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
           D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGNIVTG
Sbjct: 184 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 243
Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
           +D QTQ +I  G LP  L LL  S K++IKKEACWTISNITAGN +QIQAVIDA L+ PL
Sbjct: 244 NDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 302
Query: 299 VNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRIVTVC 356
           V LL+ AE   KKEA WAISNA+SGG    + I+YLV +GCIKPLCDL    D RI+ V 
Sbjct: 303 VKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 362
Query: 357 LEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILE 416
           L+ LENILK+GEA+K       ++N+ A  +E+A G+EKI N Q ++N++IYEKA KI+E
Sbjct: 363 LDALENILKMGEADKE--ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 420
Query: 417 TYW 419
           TY+
Sbjct: 421 TYF 423

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 3/158 (1%)
Query: 168 LPALAQLVHSND-EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVL- 225
           LP + Q ++S+D +E L+        LS      I  VI+AGV PRLVE +    P +L 
Sbjct: 3   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 62
Query: 226 IPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 285
           + A   + NI +G   QT+ ++   A+P  + LL ++    +K++A W + N+   + D 
Sbjct: 63  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 286 IQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSG 323
              V+    + P++ L  + +  + + A W +SN   G
Sbjct: 122 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 159

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score =  423 bits (1087), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/464 (49%), Positives = 306/464 (65%), Gaps = 26/464 (5%)
Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +QFE+
Sbjct: 48  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 107
Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    RDLV
Sbjct: 108 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 167
Query: 121 LSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV 175
           +  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L +L+
Sbjct: 168 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 227
Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
           H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR +GNI
Sbjct: 228 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 287
Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
           VTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 288 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 346
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
             LV +L  A+F  +KEAAWAI+N TSGGT EQI YLV  G I+PL +L    D +I+ V
Sbjct: 347 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 406
Query: 356 CLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411
            L+ + NI     K+GE EK            + ++EE  GL+KIE LQ H+N  +Y+ +
Sbjct: 407 ILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESVYKAS 455
Query: 412 VKILETYW-LEEDDETIAAGDGPQPGFPYAGNEVQVPS-GGFNF 453
           + ++E Y+ +EE+++     +    GF +   +VQ  + G FNF
Sbjct: 456 LNLIEKYFSVEEEEDQNVVPETTSEGFAF---QVQDGAPGTFNF 496

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score =  423 bits (1087), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/464 (49%), Positives = 306/464 (65%), Gaps = 26/464 (5%)
Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +QFE+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 121 LSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV 175
           +  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
           H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR +GNI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
           VTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
             LV +L  A+F  +KEAAWAI+N TSGGT EQI YLV  G I+PL +L    D +I+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 356 CLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411
            L+ + NI     K+GE EK            + ++EE  GL+KIE LQ H+N  +Y+ +
Sbjct: 421 ILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESVYKAS 469
Query: 412 VKILETYW-LEEDDETIAAGDGPQPGFPYAGNEVQVPS-GGFNF 453
           + ++E Y+ +EE+++     +    GF +   +VQ  + G FNF
Sbjct: 470 LNLIEKYFSVEEEEDQNVVPETTSEGFAF---QVQDGAPGTFNF 510

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score =  423 bits (1087), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/464 (49%), Positives = 306/464 (65%), Gaps = 26/464 (5%)
Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +QFE+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 121 LSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV 175
           +  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
           H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR +GNI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
           VTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
             LV +L  A+F  +KEAAWAI+N TSGGT EQI YLV  G I+PL +L    D +I+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 356 CLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411
            L+ + NI     K+GE EK            + ++EE  GL+KIE LQ H+N  +Y+ +
Sbjct: 421 ILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESVYKAS 469
Query: 412 VKILETYW-LEEDDETIAAGDGPQPGFPYAGNEVQVPS-GGFNF 453
           + ++E Y+ +EE+++     +    GF +   +VQ  + G FNF
Sbjct: 470 LNLIEKYFSVEEEEDQNVVPETTSEGFAF---QVQDGAPGTFNF 510

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score =  423 bits (1087), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/464 (49%), Positives = 306/464 (65%), Gaps = 26/464 (5%)
Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +QFE+
Sbjct: 18  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 77
Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    RDLV
Sbjct: 78  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137
Query: 121 LSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV 175
           +  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L +L+
Sbjct: 138 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 197
Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
           H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR +GNI
Sbjct: 198 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 257
Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
           VTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 258 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 316
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
             LV +L  A+F  +KEAAWAI+N TSGGT EQI YLV  G I+PL +L    D +I+ V
Sbjct: 317 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 376
Query: 356 CLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411
            L+ + NI     K+GE EK            + ++EE  GL+KIE LQ H+N  +Y+ +
Sbjct: 377 ILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESVYKAS 425
Query: 412 VKILETYW-LEEDDETIAAGDGPQPGFPYAGNEVQVPS-GGFNF 453
           + ++E Y+ +EE+++     +    GF +   +VQ  + G FNF
Sbjct: 426 LNLIEKYFSVEEEEDQNVVPETTSEGFAF---QVQDGAPGTFNF 466

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score =  422 bits (1085), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/464 (49%), Positives = 306/464 (65%), Gaps = 26/464 (5%)
Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +QFE+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 121 LSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV 175
           +  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
           H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR +GNI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
           VTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
             LV +L  A+F  +KEAAWAI+N TSGGT EQI YLV  G I+PL +L    D +I+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 356 CLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411
            L+ + NI     K+GE EK            + ++EE  GL+KIE LQ H+N  +Y+ +
Sbjct: 371 ILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESVYKAS 419
Query: 412 VKILETYW-LEEDDETIAAGDGPQPGFPYAGNEVQVPS-GGFNF 453
           + ++E Y+ +EE+++     +    GF +   +VQ  + G FNF
Sbjct: 420 LNLIEKYFSVEEEEDQNVVPETTSEGFAF---QVQDGAPGTFNF 460

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score =  421 bits (1082), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/449 (49%), Positives = 298/449 (66%), Gaps = 22/449 (4%)
Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +QFE+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 121 LSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV 175
           +  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
           H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR +GNI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
           VTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
             LV +L  A+F  +KEAAWAI+N TSGGT EQI YLV  G I+PL +L    D +I+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 356 CLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411
            L+ + NI     K+GE EK            + ++EE  GL+KIE LQ H+N  +Y+ +
Sbjct: 421 ILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESVYKAS 469
Query: 412 VKILETYW-LEEDDETIAAGDGPQPGFPY 439
           + ++E Y+ +EE+++     +    GF +
Sbjct: 470 LNLIEKYFSVEEEEDQNVVPETTSEGFAF 498

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score =  418 bits (1075), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/467 (49%), Positives = 302/467 (64%), Gaps = 32/467 (6%)
Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S +   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL R D   +QFE+
Sbjct: 13  IVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFES 72
Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    RDLV
Sbjct: 73  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLV 132
Query: 121 LSQGALIPLLAQLNERAKLSM----LRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV 175
           +  GA+ PLLA L      S+    LRN TWTLSN CR K P PP D V   LP L +L+
Sbjct: 133 IKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLL 192
Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
           H +D EVL D CWA+SYL+DG N++I  V++ GV P+LV+LLG     ++ PALR +GNI
Sbjct: 193 HHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNI 252
Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
           VTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 253 VTGTDEQTQVVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 311
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
             LV++L  A+F  +KEA WA++N TSGGT EQI YLV  G I+PL +L    D +I+ V
Sbjct: 312 PFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILV 371
Query: 356 CLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411
            L+ + NI     K+GE EK            + ++EE  GL+KIE LQ+H+N  +Y+ +
Sbjct: 372 ILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQNHENESVYKAS 420
Query: 412 VKILETYWL--EEDDETIAAGDGPQPGFPYAGNEVQVPSGG---FNF 453
           + ++E Y+   EE+D+ +       P     G   QV  G    FNF
Sbjct: 421 LSLIEKYFSVEEEEDQNVV------PETTSEGYTFQVQDGAPGTFNF 461

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score =  418 bits (1074), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/464 (48%), Positives = 304/464 (65%), Gaps = 26/464 (5%)
Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +QFE+
Sbjct: 81  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 140
Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AG     RDLV
Sbjct: 141 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLV 200
Query: 121 LSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV 175
           +  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L +L+
Sbjct: 201 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 260
Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
           H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR +GNI
Sbjct: 261 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320
Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
           VTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 321 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 379
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
             LV +L  A+F  +K AAWAI+N TSGGT EQI YLV  G I+PL +L    D +I+ V
Sbjct: 380 PFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 439
Query: 356 CLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411
            L+ + NI     K+GE EK            + ++EE  GL+KIE LQ H+N  +Y+ +
Sbjct: 440 ILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESVYKAS 488
Query: 412 VKILETYW-LEEDDETIAAGDGPQPGFPYAGNEVQVPS-GGFNF 453
           + ++E Y+ +EE+++     +    GF +   +VQ  + G FNF
Sbjct: 489 LNLIEKYFSVEEEEDQNVVPETTSEGFAF---QVQDGAPGTFNF 529

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score =  417 bits (1073), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/428 (51%), Positives = 288/428 (67%), Gaps = 21/428 (4%)
Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +QFE+
Sbjct: 46  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 105
Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    RDLV
Sbjct: 106 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 165
Query: 121 LSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV 175
           +  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L +L+
Sbjct: 166 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 225
Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
           H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR +GNI
Sbjct: 226 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 285
Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
           VTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 286 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 344
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
             LV +L  A+F  +KEAAWAI+N TSGGT EQI YLV  G I+PL +L    D +I+ V
Sbjct: 345 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 404
Query: 356 CLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411
            L+ + NI     K+GE EK            + ++EE  GL+KIE LQ H+N  +Y+ +
Sbjct: 405 ILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESVYKAS 453
Query: 412 VKILETYW 419
           + ++E Y+
Sbjct: 454 LNLIEKYF 461

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score =  417 bits (1072), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/428 (51%), Positives = 288/428 (67%), Gaps = 21/428 (4%)
Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +QFE+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 121 LSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV 175
           +  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
           H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR +GNI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
           VTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
             LV +L  A+F  +KEAAWAI+N TSGGT EQI YLV  G I+PL +L    D +I+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 356 CLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411
            L+ + NI     K+GE EK            + ++EE  GL+KIE LQ H+N  +Y+ +
Sbjct: 371 ILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESVYKAS 419
Query: 412 VKILETYW 419
           + ++E Y+
Sbjct: 420 LNLIEKYF 427

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score =  417 bits (1072), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/428 (51%), Positives = 288/428 (67%), Gaps = 21/428 (4%)
Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +QFE+
Sbjct: 38  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 97
Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    RDLV
Sbjct: 98  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 157
Query: 121 LSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV 175
           +  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L +L+
Sbjct: 158 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 217
Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
           H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR +GNI
Sbjct: 218 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 277
Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
           VTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 278 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 336
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
             LV +L  A+F  +KEAAWAI+N TSGGT EQI YLV  G I+PL +L    D +I+ V
Sbjct: 337 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 396
Query: 356 CLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411
            L+ + NI     K+GE EK            + ++EE  GL+KIE LQ H+N  +Y+ +
Sbjct: 397 ILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESVYKAS 445
Query: 412 VKILETYW 419
           + ++E Y+
Sbjct: 446 LNLIEKYF 453

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score =  417 bits (1072), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/428 (51%), Positives = 288/428 (67%), Gaps = 21/428 (4%)
Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +QFE+
Sbjct: 7   IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    RDLV
Sbjct: 67  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 121 LSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV 175
           +  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L +L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
           H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR +GNI
Sbjct: 187 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 246
Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
           VTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 247 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 305
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
             LV +L  A+F  +KEAAWAI+N TSGGT EQI YLV  G I+PL +L    D +I+ V
Sbjct: 306 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 365
Query: 356 CLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411
            L+ + NI     K+GE EK            + ++EE  GL+KIE LQ H+N  +Y+ +
Sbjct: 366 ILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESVYKAS 414
Query: 412 VKILETYW 419
           + ++E Y+
Sbjct: 415 LNLIEKYF 422

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score =  417 bits (1071), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/428 (51%), Positives = 288/428 (67%), Gaps = 21/428 (4%)
Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +QFE+
Sbjct: 7   IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    RDLV
Sbjct: 67  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 121 LSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV 175
           +  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L +L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
           H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR +GNI
Sbjct: 187 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 246
Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
           VTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 247 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 305
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
             LV +L  A+F  +KEAAWAI+N TSGGT EQI YLV  G I+PL +L    D +I+ V
Sbjct: 306 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 365
Query: 356 CLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411
            L+ + NI     K+GE EK            + ++EE  GL+KIE LQ H+N  +Y+ +
Sbjct: 366 ILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESVYKAS 414
Query: 412 VKILETYW 419
           + ++E Y+
Sbjct: 415 LNLIEKYF 422

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score =  417 bits (1071), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/428 (51%), Positives = 288/428 (67%), Gaps = 21/428 (4%)
Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +QFE+
Sbjct: 11  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    RDLV
Sbjct: 71  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 121 LSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV 175
           +  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L +L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
           H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR +GNI
Sbjct: 191 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 250
Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
           VTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 251 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 309
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
             LV +L  A+F  +KEAAWAI+N TSGGT EQI YLV  G I+PL +L    D +I+ V
Sbjct: 310 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 369
Query: 356 CLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411
            L+ + NI     K+GE EK            + ++EE  GL+KIE LQ H+N  +Y+ +
Sbjct: 370 ILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESVYKAS 418
Query: 412 VKILETYW 419
           + ++E Y+
Sbjct: 419 LNLIEKYF 426

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score =  417 bits (1071), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/428 (51%), Positives = 288/428 (67%), Gaps = 21/428 (4%)
Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +QFE+
Sbjct: 11  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    RDLV
Sbjct: 71  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 121 LSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV 175
           +  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L +L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
           H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR +GNI
Sbjct: 191 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 250
Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
           VTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 251 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 309
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
             LV +L  A+F  +KEAAWAI+N TSGGT EQI YLV  G I+PL +L    D +I+ V
Sbjct: 310 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 369
Query: 356 CLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411
            L+ + NI     K+GE EK            + ++EE  GL+KIE LQ H+N  +Y+ +
Sbjct: 370 ILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESVYKAS 418
Query: 412 VKILETYW 419
           + ++E Y+
Sbjct: 419 LNLIEKYF 426

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score =  416 bits (1070), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/428 (51%), Positives = 288/428 (67%), Gaps = 21/428 (4%)
Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +QFE+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 121 LSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV 175
           +  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
           H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR +GNI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
           VTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
             LV +L  A+F  +KEAAWAI+N TSGGT EQI YLV  G I+PL +L    D +I+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 356 CLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411
            L+ + NI     K+GE EK            + ++EE  GL+KIE LQ H+N  +Y+ +
Sbjct: 371 ILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESVYKAS 419
Query: 412 VKILETYW 419
           + ++E Y+
Sbjct: 420 LNLIEKYF 427

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  163 bits (413), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 104/252 (41%), Positives = 146/252 (57%), Gaps = 17/252 (6%)
Query: 168 LPALAQLVHSNDEEVLTDACWALSY-LSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 226
           LP + Q ++S+D +    A    S  LSDG N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 227 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 286
            AL  + NI +G + Q Q +I  GALP L+ LL+ S  + I +EA W +SNI +G  +QI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131
Query: 287 QAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV 346
           QAVIDAG +  LV LL +    I +EA WA+SN  SGG +EQI+ ++  G +  L  L  
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLS 190
Query: 347 CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNE 406
            P+ +I+   L  L NI   G             N+  Q V+EA  LEK+E LQSH+N +
Sbjct: 191 SPNEQILQEALWALSNIASGG-------------NEQKQAVKEAGALEKLEQLQSHENEK 237
Query: 407 IYEKAVKILETY 418
           I ++A + LE  
Sbjct: 238 IQKEAQEALEKL 249

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score =  141 bits (356), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 84/197 (42%), Positives = 117/197 (59%), Gaps = 4/197 (2%)
Query: 168 LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIP 227
           LP + Q ++S D++ L  A   LS ++ G N++IQAVI+AG  P LV+LL  P+  +L  
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 228 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ 287
           AL  + NI +G + Q Q +I  GALP L+ LL+ S  + I +EA W +SNI +G  +QIQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQ 132
Query: 288 AVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKP-LCDLFV 346
           AVIDAG +  LV LL +    I +EA WA+SN  SGG  +  K  V+E   +P L  L  
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEAGAEPALEQLQS 190
Query: 347 CPDPRIVTVCLEGLENI 363
            P+ +I     E LE I
Sbjct: 191 SPNEKIQKEAQEALEKI 207

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  138 bits (347), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 81/196 (41%), Positives = 117/196 (59%), Gaps = 2/196 (1%)
Query: 168 LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIP 227
           LP + Q ++S D++ L  A   LS ++ G N++IQAVI+AG  P LV+LL  P+  +L  
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 228 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ 287
           AL  + NI +G + Q Q +I  GALP L+ LL+ S  + I +EA W +SNI +G  +QIQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQ 132
Query: 288 AVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC 347
           AVIDAG +  LV LL +    I +EA WA+SN  SGG +EQ + +   G ++ L  L   
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSH 191
Query: 348 PDPRIVTVCLEGLENI 363
            + +I     E LE +
Sbjct: 192 ENEKIQKEAQEALEKL 207

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  135 bits (341), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 83/209 (39%), Positives = 117/209 (55%), Gaps = 15/209 (7%)
Query: 210 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKK 269
            P++V+ L  P    L  ALR +  I +G + Q Q +I  GALP L+ LL+ S  + I +
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 270 EACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQI 329
           EA W +SNI +G  +QIQAVIDAG +  LV LL +    I +EA WA+SN  SGG +EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 330 KYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEE 389
           + ++  G +  L  L   P+ +I+   L  L NI   G             N+  Q V+E
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKE 178
Query: 390 AEGLEKIENLQSHDNNEIYEKAVKILETY 418
           A  LEK+E LQSH+N +I ++A + LE  
Sbjct: 179 AGALEKLEQLQSHENEKIQKEAQEALEKL 207

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/197 (41%), Positives = 116/197 (58%), Gaps = 4/197 (2%)
Query: 168 LPALAQLVHSNDEEVLTDACWALSY-LSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 226
           LP + Q ++S+D +    A    S  LSDG N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 227 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 286
            AL  + NI +G + Q Q +I  GALP L+ LL+ S  + I +EA W +SNI +G  +QI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131
Query: 287 QAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV 346
           QAVIDAG +  LV LL +    I +EA WA+SN  SGG +EQ + +   G ++ L  L  
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQS 190
Query: 347 CPDPRIVTVCLEGLENI 363
             + +I     E LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/209 (37%), Positives = 113/209 (54%), Gaps = 15/209 (7%)
Query: 210 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKK 269
            P++ + L        + A R    I++  + Q Q +I  GALP L+ LL+ S  + I +
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 270 EACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQI 329
           EA W +SNI +G  +QIQAVIDAG +  LV LL +    I +EA WA+SN  SGG +EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 330 KYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEE 389
           + ++  G +  L  L   P+ +I+   L  L NI   G             N+  Q V+E
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKE 178
Query: 390 AEGLEKIENLQSHDNNEIYEKAVKILETY 418
           A  LEK+E LQSH+N +I ++A + LE  
Sbjct: 179 AGALEKLEQLQSHENEKIQKEAQEALEKL 207

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score =  109 bits (272), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 117/223 (52%), Gaps = 5/223 (2%)
Query: 143 RNATWTLSNFCRGKPQPPFDQVRPA--LPALAQLVHSNDEEVLTDACWALSYLSDGTNDK 200
           + A   L+    G P      +  A  +  L +L+ S D EV  +A  AL+ ++ G ++ 
Sbjct: 20  KEAARDLAEIASG-PASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 78
Query: 201 IQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT 260
           I+A+++AG    LV+LL      V   A R + NI +G D   + I+  G +  L+ LLT
Sbjct: 79  IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 138
Query: 261 HSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA 320
            +  + ++KEA   ++NI +G  + I+A++DAG V  LV LL + + +++KEAA A++N 
Sbjct: 139 STDSE-VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 197
Query: 321 TSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENI 363
            SG T   IK +V  G ++ L  L    D  +       LENI
Sbjct: 198 ASGPTS-AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 130/255 (50%), Gaps = 19/255 (7%)
Query: 171 LAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALR 230
           L +L+ S D E   +A   L+ ++ G    I+A+++AG    LV+LL      V   A R
Sbjct: 7   LVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 66
Query: 231 TVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI 290
            + NI +G D   + I+  G +  L+ LLT +  + ++KEA   ++NI +G  + I+A++
Sbjct: 67  ALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSE-VQKEAARALANIASGPDEAIKAIV 125
Query: 291 DAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDP 350
           DAG V  LV LL + + +++KEAA A++N  S G  E IK +V  G ++ L  L    D 
Sbjct: 126 DAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPDEAIKAIVDAGGVEVLVKLLTSTDS 184
Query: 351 RIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEK 410
            +       L NI            A+   +    +V +A G+E ++ L +  ++E+ ++
Sbjct: 185 EVQKEAARALANI------------ASGPTSAIKAIV-DAGGVEVLQKLLTSTDSEVQKE 231
Query: 411 AVKILETY----WLE 421
           A + LE      WLE
Sbjct: 232 AQRALENIKSGGWLE 246

>pdb|3T7U|A Chain A, A New Crytal Structure Of Apc-Arm Length = 378

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 18/236 (7%)
Query: 98  VREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAK------LSMLRNATWTLS 150
           +R  A  AL N+  GD      L   +G +  L+AQL   ++       S+LRN +W  +
Sbjct: 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-A 158
Query: 151 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 210
           +    K       V+  +    ++   +  + +  A W LS  +  T +K       G  
Sbjct: 159 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS--AHCTENKADICAVDGAL 216
Query: 211 PRLVELLGHPSPSVLIPA-------LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH 263
             LV  L + S +  +         LR V +++  ++   Q +     L  LL  L  SH
Sbjct: 217 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SH 275
Query: 264 KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN 319
             +I   AC T+ N++A N    +A+ D G V  L NL+ +    I   +A A+ N
Sbjct: 276 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 331

>pdb|3QHE|A Chain A, Crystal Structure Of The Complex Between The Armadillo Repeat Domain Of Adenomatous Polyposis Coli And The Tyrosine-Rich Domain Of Sam68 Length = 337

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 18/236 (7%)
Query: 98  VREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAK------LSMLRNATWTLS 150
           +R  A  AL N+  GD      L   +G +  L+AQL   ++       S+LRN +W  +
Sbjct: 102 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-A 160
Query: 151 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 210
           +    K       V+  +    ++   +  + +  A W LS  +  T +K       G  
Sbjct: 161 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS--AHCTENKADICAVDGAL 218
Query: 211 PRLVELLGHPSPSVLIPA-------LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH 263
             LV  L + S +  +         LR V +++  ++   Q +     L  LL  L  SH
Sbjct: 219 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SH 277
Query: 264 KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN 319
             +I   AC T+ N++A N    +A+ D G V  L NL+ +    I   +A A+ N
Sbjct: 278 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 333

>pdb|3NMX|A Chain A, Crystal Structure Of Apc Complexed With Asef Length = 354

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 18/236 (7%)
Query: 98  VREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAK------LSMLRNATWTLS 150
           +R  A  AL N+  GD      L   +G +  L+AQL   ++       S+LRN +W  +
Sbjct: 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-A 158
Query: 151 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 210
           +    K       V+  +    ++   +  + +  A W LS  +  T +K       G  
Sbjct: 159 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS--AHCTENKADICAVDGAL 216
Query: 211 PRLVELLGHPSPSVLIPA-------LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH 263
             LV  L + S +  +         LR V +++  ++   Q +     L  LL  L  SH
Sbjct: 217 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SH 275
Query: 264 KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN 319
             +I   AC T+ N++A N    +A+ D G V  L NL+ +    I   +A A+ N
Sbjct: 276 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 331

>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region And Its C-Terminal Domain Length = 644

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 178 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 232
           N  +V T  C A     LS+  +G    + A+ ++G  P LV++LG P  SVL  A+ T+
Sbjct: 67  NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122
Query: 233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIK-KEACWTISNITAGNRDQIQAVID 291
            N++   +     +   G L  ++ LL  ++ K +     C  I  +  GN++    ++ 
Sbjct: 123 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 180
Query: 292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 349
           +G    LVN+++   ++   +  W  S               +V  G ++ L      P 
Sbjct: 181 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 237
Query: 350 PRIVTVCLEGLENILKVGEAEKNM 373
            R+V  CL  L N+      ++ M
Sbjct: 238 QRLVQNCLWTLRNLSDAATKQEGM 261

>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin Length = 780

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 83/200 (41%), Gaps = 9/200 (4%)
Query: 177 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 236
           +ND E        L  LS    + + A+ ++G  P LV +LG P  SVL  A+ T+ N++
Sbjct: 204 TNDVETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLL 262
Query: 237 TGDDFQTQCIITYGALPYLLGLLTHSHKKSIK-KEACWTISNITAGNRDQIQAVIDAGLV 295
              +     +   G L  ++ LL  ++ K +     C  I  +  GN++    ++ +G  
Sbjct: 263 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILASGGP 320
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPDPRIV 353
             LVN+++   ++   +  W  S               +V  G ++ L      P  R+V
Sbjct: 321 QALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLV 377
Query: 354 TVCLEGLENILKVGEAEKNM 373
             CL  L N+      ++ M
Sbjct: 378 QNCLWTLRNLSDAATKQEGM 397

>pdb|3NMZ|A Chain A, Crytal Structure Of Apc Complexed With Asef Length = 458

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 18/236 (7%)
Query: 98  VREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAK------LSMLRNATWTLS 150
           +R  A  AL N+  GD      L   +G +  L+AQL   ++       S+LRN +W  +
Sbjct: 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-A 274
Query: 151 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 210
           +    K       V+  +    ++   +  + +  A W LS  +  T +K       G  
Sbjct: 275 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS--AHCTENKADICAVDGAL 332
Query: 211 PRLVELLGHPSPSVLIPA-------LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH 263
             LV  L + S +  +         LR V +++  ++   Q +     L  LL  L  SH
Sbjct: 333 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SH 391
Query: 264 KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN 319
             +I   AC T+ N++A N    +A+ D G V  L NL+ +    I   +A A+ N
Sbjct: 392 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 447

>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX Length = 550

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 178 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 232
           N  +V T  C A     LS+  +G    + A+ ++G  P LV++LG P  SVL  A+ T+
Sbjct: 68  NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 123
Query: 233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 291
            N++   +     +   G L  ++ LL  ++ K +     C  I  +  GN++    ++ 
Sbjct: 124 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 181
Query: 292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 349
           +G    LVN+++   ++   +  W  S               +V  G ++ L      P 
Sbjct: 182 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 238
Query: 350 PRIVTVCLEGLENILKVGEAEKNM 373
            R+V  CL  L N+      ++ M
Sbjct: 239 QRLVQNCLWTLRNLSDAATKQEGM 262

>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1 Length = 540

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 178 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 232
           N  +V T  C A     LS+  +G    + A+ ++G  P LV++LG P  SVL  A+ T+
Sbjct: 73  NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 128
Query: 233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 291
            N++   +     +   G L  ++ LL  ++ K +     C  I  +  GN++    ++ 
Sbjct: 129 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 186
Query: 292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 349
           +G    LVN+++   ++   +  W  S               +V  G ++ L      P 
Sbjct: 187 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 243
Query: 350 PRIVTVCLEGLENILKVGEAEKNM 373
            R+V  CL  L N+      ++ M
Sbjct: 244 QRLVQNCLWTLRNLSDAATKQEGM 267

>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex Length = 540

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 178 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 232
           N  +V T  C A     LS+  +G    + A+ ++G  P LV++LG P  SVL  A+ T+
Sbjct: 74  NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 129
Query: 233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 291
            N++   +     +   G L  ++ LL  ++ K +     C  I  +  GN++    ++ 
Sbjct: 130 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 187
Query: 292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 349
           +G    LVN+++   ++   +  W  S               +V  G ++ L      P 
Sbjct: 188 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 244
Query: 350 PRIVTVCLEGLENILKVGEAEKNM 373
            R+V  CL  L N+      ++ M
Sbjct: 245 QRLVQNCLWTLRNLSDAATKQEGM 268

>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex Length = 538

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 178 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 232
           N  +V T  C A     LS+  +G    + A+ ++G  P LV++LG P  SVL  A+ T+
Sbjct: 71  NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 126
Query: 233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 291
            N++   +     +   G L  ++ LL  ++ K +     C  I  +  GN++    ++ 
Sbjct: 127 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 184
Query: 292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 349
           +G    LVN+++   ++   +  W  S               +V  G ++ L      P 
Sbjct: 185 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 241
Query: 350 PRIVTVCLEGLENILKVGEAEKNM 373
            R+V  CL  L N+      ++ M
Sbjct: 242 QRLVQNCLWTLRNLSDAATKQEGM 265

>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL DomainUNPHOSPHORYLATED APC R3 Length = 519

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 178 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 232
           N  +V T  C A     LS+  +G    + A+ ++G  P LV++LG P  SVL  A+ T+
Sbjct: 59  NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 114
Query: 233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 291
            N++   +     +   G L  ++ LL  ++ K +     C  I  +  GN++    ++ 
Sbjct: 115 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 172
Query: 292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 349
           +G    LVN+++   ++   +  W  S               +V  G ++ L      P 
Sbjct: 173 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 229
Query: 350 PRIVTVCLEGLENILKVGEAEKNM 373
            R+V  CL  L N+      ++ M
Sbjct: 230 QRLVQNCLWTLRNLSDAATKQEGM 253

>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin Length = 516

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 178 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 232
           N  +V T  C A     LS+  +G    + A+ ++G  P LV++LG P  SVL  A+ T+
Sbjct: 55  NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 110
Query: 233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 291
            N++   +     +   G L  ++ LL  ++ K +     C  I  +  GN++    ++ 
Sbjct: 111 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 168
Query: 292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 349
           +G    LVN+++   ++   +  W  S               +V  G ++ L      P 
Sbjct: 169 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 225
Query: 350 PRIVTVCLEGLENILKVGEAEKNM 373
            R+V  CL  L N+      ++ M
Sbjct: 226 QRLVQNCLWTLRNLSDAATKQEGM 249

>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled Peptide Inhibitor Length = 518

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 178 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 232
           N  +V T  C A     LS+  +G    + A+ ++G  P LV++LG P  SVL  A+ T+
Sbjct: 57  NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 112
Query: 233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 291
            N++   +     +   G L  ++ LL  ++ K +     C  I  +  GN++    ++ 
Sbjct: 113 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 170
Query: 292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 349
           +G    LVN+++   ++   +  W  S               +V  G ++ L      P 
Sbjct: 171 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 227
Query: 350 PRIVTVCLEGLENILKVGEAEKNM 373
            R+V  CL  L N+      ++ M
Sbjct: 228 QRLVQNCLWTLRNLSDAATKQEGM 251

>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4 Length = 529

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 178 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 232
           N  +V T  C A     LS+  +G    + A+ ++G  P LV++LG P  SVL  A+ T+
Sbjct: 70  NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 125
Query: 233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 291
            N++   +     +   G L  ++ LL  ++ K +     C  I  +  GN++    ++ 
Sbjct: 126 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 183
Query: 292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 349
           +G    LVN+++   ++   +  W  S               +V  G ++ L      P 
Sbjct: 184 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 240
Query: 350 PRIVTVCLEGLENILKVGEAEKNM 373
            R+V  CL  L N+      ++ M
Sbjct: 241 QRLVQNCLWTLRNLSDAATKQEGM 264

>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta- Catenin Length = 533

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 178 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 232
           N  +V T  C A     LS+  +G    + A+ ++G  P LV++LG P  SVL  A+ T+
Sbjct: 72  NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 127
Query: 233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 291
            N++   +     +   G L  ++ LL  ++ K +     C  I  +  GN++    ++ 
Sbjct: 128 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 185
Query: 292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 349
           +G    LVN+++   ++   +  W  S               +V  G ++ L      P 
Sbjct: 186 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 242
Query: 350 PRIVTVCLEGLENILKVGEAEKNM 373
            R+V  CL  L N+      ++ M
Sbjct: 243 QRLVQNCLWTLRNLSDAATKQEGM 266

>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo Repeat Complex Length = 532

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 178 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 232
           N  +V T  C A     LS+  +G    + A+ ++G  P LV++LG P  SVL  A+ T+
Sbjct: 72  NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 127
Query: 233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 291
            N++   +     +   G L  ++ LL  ++ K +     C  I  +  GN++    ++ 
Sbjct: 128 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 185
Query: 292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 349
           +G    LVN+++   ++   +  W  S               +V  G ++ L      P 
Sbjct: 186 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 242
Query: 350 PRIVTVCLEGLENILKVGEAEKNM 373
            R+V  CL  L N+      ++ M
Sbjct: 243 QRLVQNCLWTLRNLSDAATKQEGM 266

>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex Length = 527

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 178 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 232
           N  +V T  C A     LS+  +G    + A+ ++G  P LV++LG P  SVL  A+ T+
Sbjct: 68  NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 123
Query: 233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 291
            N++   +     +   G L  ++ LL  ++ K +     C  I  +  GN++    ++ 
Sbjct: 124 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 181
Query: 292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 349
           +G    LVN+++   ++   +  W  S               +V  G ++ L      P 
Sbjct: 182 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 238
Query: 350 PRIVTVCLEGLENILKVGEAEKNM 373
            R+V  CL  L N+      ++ M
Sbjct: 239 QRLVQNCLWTLRNLSDAATKQEGM 262

>pdb|3AU3|A Chain A, Crystal Structure Of Armadillo Repeat Domain Of Apc Length = 344

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 96/236 (40%), Gaps = 18/236 (7%)
Query: 98  VREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAK------LSMLRNATWTLS 150
           +R  A  AL N+  GD      L   +G    L+AQL   ++       S+LRN +W  +
Sbjct: 109 LRRYAGXALTNLTFGDVANKATLCSXKGCXRALVAQLKSESEDLQQVIASVLRNLSWR-A 167
Query: 151 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 210
           +    K       V+       ++   +  + +  A W LS  +  T +K       G  
Sbjct: 168 DVNSKKTLREVGSVKALXECALEVKKESTLKSVLSALWNLS--AHCTENKADICAVDGAL 225
Query: 211 PRLVELLGHPSPSVLIPA-------LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH 263
             LV  L + S +  +         LR V +++  ++   Q +     L  LL  L  SH
Sbjct: 226 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SH 284
Query: 264 KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN 319
             +I   AC T+ N++A N    +A+ D G V  L NL+ +    I   +A A+ N
Sbjct: 285 SLTIVSNACGTLWNLSARNPKDQEALWDXGAVSXLKNLIHSKHKXIAXGSAAALRN 340

>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX Length = 514

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 178 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 232
           N  +V T  C A     LS+  +G    + A+ ++G  P LV++LG P  SVL  A+ T+
Sbjct: 55  NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 110
Query: 233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 291
            N++   +     +   G L  ++ LL  ++ K +     C  I  +  GN++    ++ 
Sbjct: 111 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 168
Query: 292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 349
           +G    LVN+++   ++   +  W  S               +V  G ++ L      P 
Sbjct: 169 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 225
Query: 350 PRIVTVCLEGLENILKVGEAEKNM 373
            R+V  CL  L N+      ++ M
Sbjct: 226 QRLVQNCLWTLRNLSDAATKQEGM 249

>pdb|3NMW|A Chain A, Crytal Structure Of Armadillo Repeats Domain Of Apc Length = 354

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 96/236 (40%), Gaps = 18/236 (7%)
Query: 98  VREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAK------LSMLRNATWTLS 150
           +R  A  AL N+  GD      L   +G    L+AQL   ++       S+LRN +W  +
Sbjct: 100 LRRYAGXALTNLTFGDVANKATLCSXKGCXRALVAQLKSESEDLQQVIASVLRNLSWR-A 158
Query: 151 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 210
           +    K       V+       ++   +  + +  A W LS  +  T +K       G  
Sbjct: 159 DVNSKKTLREVGSVKALXECALEVKKESTLKSVLSALWNLS--AHCTENKADICAVDGAL 216
Query: 211 PRLVELLGHPSPSVLIPA-------LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH 263
             LV  L + S +  +         LR V +++  ++   Q +     L  LL  L  SH
Sbjct: 217 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SH 275
Query: 264 KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN 319
             +I   AC T+ N++A N    +A+ D G V  L NL+ +    I   +A A+ N
Sbjct: 276 SLTIVSNACGTLWNLSARNPKDQEALWDXGAVSXLKNLIHSKHKXIAXGSAAALRN 331

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	454
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	0.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	4e-57
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	0.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	6e-53
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	0.0
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	8e-54
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-35
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	7e-16
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	7e-05
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-114
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-71
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-64
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-54
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-39
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-27
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-23
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-15
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-113
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	7e-83
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-78
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-70
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-65
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-55
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	9e-33
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-96
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-89
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-11
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-94
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-77
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-63
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	4e-87
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	6e-68
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-55
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-77
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-26
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	8e-21
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-12
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-67
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	9e-29
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-21
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-20
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-11
3nmz_A	458	APC variant protein; protein-protein complex, arma	4e-63
3nmz_A	458	APC variant protein; protein-protein complex, arma	9e-56
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-55
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-36
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-61
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-26
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	4e-09
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	3e-48
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	3e-40
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	5e-21
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-44
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	4e-39
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-18
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-40
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	9e-23
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-10
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	3e-21
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	1e-14
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	8e-15
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	2e-13
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	2e-05
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	1e-14
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	7e-10
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	4e-14
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	6e-12
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	1e-08
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	1e-12
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	5e-08
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	1e-04
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	1e-09
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	9e-09
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	7e-09
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	2e-06
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-08
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	2e-08
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	3e-05
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	3e-08
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	2e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	2e-05
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	4e-08
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	2e-07
3grl_A	651	General vesicular transport factor P115; vesicle t	2e-06
1qgr_A	876	Protein (importin beta subunit); transport recepto	1e-04

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  560 bits (1444), Expect = 0.0
 Identities = 258/428 (60%), Positives = 312/428 (72%), Gaps = 5/428 (1%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQFE 59
           M+  ++S     QL AT +FRKLLS E +PPI+EVI + GVV RFVEFL R++   LQFE
Sbjct: 25  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84

Query: 60  AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 119
           +AW LTNIASG S  T++VI  GAVPIF++LL+S  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 85  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144

Query: 120 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSN 178
           VL    L PLL   +++ +L+M RNA W LSN CRGK P P F +V P L  L+ L+  +
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204

Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
           D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H    V+ PALR VGNIVTG
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264

Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
           DD QTQ I+   AL  LL LL+   K+SIKKEACWTISNITAGNR QIQ VIDA +   L
Sbjct: 265 DDIQTQVILNCSALQSLLHLLSS-PKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323

Query: 299 VNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE 358
           +++LQ AEF  +KEAAWAI+NATSGG+ EQIKYLV  GCIKPLCDL    D +IV V L 
Sbjct: 324 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 383

Query: 359 GLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETY 418
           GLENIL++GE E         +N Y  L+EEA GL+KIE LQSH+N EIY+KA  ++E Y
Sbjct: 384 GLENILRLGEQEAK--RNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHY 441

Query: 419 WLEEDDET 426
           +  ED+++
Sbjct: 442 FGTEDEDS 449

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  194 bits (494), Expect = 4e-57
 Identities = 70/368 (19%), Positives = 138/368 (37%), Gaps = 19/368 (5%)

Query: 66  NIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA--GDSPRCRDLVLSQ 123
                   N ++          ++++ S S + +  A      +     +P   +++ + 
Sbjct: 4   GFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTP 63

Query: 124 GALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRP-ALPALAQLVHSNDEEV 182
           G +   +  L  +   ++   + W L+N   G        ++  A+P   +L+ S  E+V
Sbjct: 64  GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDV 123

Query: 183 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP-SVLIPALRTVGNIVTGDDF 241
              A WAL  ++  +      V++  + P L++L    +  ++   A+  + N+  G   
Sbjct: 124 QEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSP 183

Query: 242 QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNL 301
             +       L  L  LL  S    +  +ACW +S ++ G  D+IQAVIDAG+   LV L
Sbjct: 184 PPEFAKVSPCLNVLSWLLFVSDTD-VLADACWALSYLSDGPNDKIQAVIDAGVCRRLVEL 242

Query: 302 LQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLE 361
           L + ++ +   A  A+ N  + G   Q + ++    ++ L  L   P   I       + 
Sbjct: 243 LMHNDYKVVSPALRAVGNIVT-GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTIS 301

Query: 362 NILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLE 421
           NI             TA      Q V +A     + ++         ++A   +      
Sbjct: 302 NI-------------TAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSG 348

Query: 422 EDDETIAA 429
              E I  
Sbjct: 349 GSAEQIKY 356

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  544 bits (1404), Expect = 0.0
 Identities = 251/443 (56%), Positives = 309/443 (69%), Gaps = 7/443 (1%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR VEF+       LQ EA
Sbjct: 92  MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEA 151

Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTS  TKVV+D  AVP+F++LL + S +V+EQA+WALGNVAGDS   RD V
Sbjct: 152 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV 211

Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSND 179
           L   A+ P+L   N   K S++R ATWTLSN CRGK PQP +  V  ALP LA+L++S D
Sbjct: 212 LQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMD 270

Query: 180 EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD 239
            E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGNIVTG+
Sbjct: 271 TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN 330

Query: 240 DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLV 299
           D QTQ +I  G LP L  LL+   K++IKKEACWTISNITAGN +QIQAVIDA L+ PLV
Sbjct: 331 DLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLV 389

Query: 300 NLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRIVTVCL 357
            LL+ AE+  KKEA WAISNA+SGG    + I+YLV +GCIKPLCDL    D RI+ V L
Sbjct: 390 KLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTL 449

Query: 358 EGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILET 417
           + LENILK+GEA+K       ++N+ A  +E+A G+EKI N Q ++N++IYEKA KI+ET
Sbjct: 450 DALENILKMGEADKEA--RGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIET 507

Query: 418 YWLEEDDETIAAGDGPQPGFPYA 440
           Y+ EE+D           G  + 
Sbjct: 508 YFGEEEDAVDETMAPQNAGNTFG 530

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  185 bits (470), Expect = 6e-53
 Identities = 77/364 (21%), Positives = 136/364 (37%), Gaps = 17/364 (4%)

Query: 54  PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA-GD 112
                 A     + +S +++          +P   + L S     +  A      +   +
Sbjct: 59  IPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSRE 118

Query: 113 SPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQV-RPALPAL 171
                D+V+  G +  L+  + E     +   A W L+N   G        V   A+P  
Sbjct: 119 HRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLF 178

Query: 172 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 231
            QL+++   EV   A WAL  ++  + D    V++      ++ L     PS++  A  T
Sbjct: 179 IQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWT 238

Query: 232 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 291
           + N+  G   Q    +   ALP L  L+     +    +ACW IS ++ G ++ IQAVID
Sbjct: 239 LSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTE-TLVDACWAISYLSDGPQEAIQAVID 297

Query: 292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 351
             +   LV LL +    ++  A  A+ N  + G   Q + ++  G +  L  L   P   
Sbjct: 298 VRIPKRLVELLSHESTLVQTPALRAVGNIVT-GNDLQTQVVINAGVLPALRLLLSSPKEN 356

Query: 352 IVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411
           I       + NI             TA   +  Q V +A  +  +  L      +  ++A
Sbjct: 357 IKKEACWTISNI-------------TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA 403

Query: 412 VKIL 415
              +
Sbjct: 404 CWAI 407

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  540 bits (1392), Expect = 0.0
 Identities = 223/459 (48%), Positives = 298/459 (64%), Gaps = 16/459 (3%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +QFE+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121

Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181

Query: 121 LSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV 175
           +  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241

Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
           H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR +GNI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301

Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
           VTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360

Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
             LV +L  A+F  +KEAAWAI+N TSGGT EQI YLV  G I+PL +L    D +I+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420

Query: 356 CLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKIL 415
            L+ + NI +  E          +  + + ++EE  GL+KIE LQ H+N  +Y+ ++ ++
Sbjct: 421 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473

Query: 416 ETYWLEEDDETIA-AGDGPQPGFPYAGNEVQVPSGGFNF 453
           E Y+  E++E      +    GF +         G FNF
Sbjct: 474 EKYFSVEEEEDQNVVPETTSEGFAFQVQ--DGAPGTFNF 510

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  187 bits (475), Expect = 8e-54
 Identities = 79/371 (21%), Positives = 137/371 (36%), Gaps = 22/371 (5%)

Query: 66  NIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA-GDSPRCRDLVLSQG 124
           +  +     +     + +V   VK + S + + + QA  A   +   +     D ++  G
Sbjct: 41  DDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAG 100

Query: 125 ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQV-RPALPALAQLVHSNDEEVL 183
            +   ++ L +     +   + W L+N   G  +     V   A+PA   L+ S    + 
Sbjct: 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS 160

Query: 184 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT-----VGNIVTG 238
             A WAL  ++   +     VI+ G    L+ LL  P  S L           + N+   
Sbjct: 161 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 220

Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
            +           LP L+ LL H+  + +  ++CW IS +T G  ++I+ V+  G+V  L
Sbjct: 221 KNPAPPLDAVEQILPTLVRLLHHNDPE-VLADSCWAISYLTDGPNERIEMVVKKGVVPQL 279

Query: 299 VNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE 358
           V LL   E  I   A  AI N  + GT EQ + ++  G +     L   P   I      
Sbjct: 280 VKLLGATELPIVTPALRAIGNIVT-GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW 338

Query: 359 GLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETY 418
            + NI             TA      Q V     +  +  + S  + +  ++A   +  Y
Sbjct: 339 TMSNI-------------TAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 385

Query: 419 WLEEDDETIAA 429
                 E I  
Sbjct: 386 TSGGTVEQIVY 396

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  137 bits (345), Expect = 1e-35
 Identities = 53/280 (18%), Positives = 97/280 (34%), Gaps = 22/280 (7%)

Query: 143 RNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWAL-SYLSDGTNDKI 201
            +      +            V  ++  + + ++SN+ E    A  A    LS      I
Sbjct: 34  PDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPI 93

Query: 202 QAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT 260
             +I AG+ P+ V  LG      +   +   + NI +G   QT+ ++  GA+P  + LL 
Sbjct: 94  DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 153

Query: 261 HSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKE-----AAW 315
             H   I ++A W + NI          VI  G + PL+ LL   +             W
Sbjct: 154 SPH-AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 212

Query: 316 AISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGT 375
            +SN      +        E  +  L  L    DP ++      +  +            
Sbjct: 213 TLSNLCR-NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL------------ 259

Query: 376 ATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKIL 415
            T   N+  ++V +   + ++  L       I   A++ +
Sbjct: 260 -TDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 298

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 78.5 bits (193), Expect = 7e-16
 Identities = 40/197 (20%), Positives = 73/197 (37%), Gaps = 17/197 (8%)

Query: 226 IPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 285
            P L T  +     D  +       ++  ++  + +S+    + +A      + +  +  
Sbjct: 33  SPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGI-NSNNLESQLQATQAARKLLSREKQP 91

Query: 286 -IQAVIDAGLVGPLVNLLQNAEF-DIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCD 343
            I  +I AGL+   V+ L   +   I+ E+AWA++N  S GT EQ K +V  G I     
Sbjct: 92  PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIAS-GTSEQTKAVVDGGAIPAFIS 150

Query: 344 LFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHD 403
           L   P   I    +  L NI               D + +  LV +   ++ +  L +  
Sbjct: 151 LLASPHAHISEQAVWALGNI-------------AGDGSAFRDLVIKHGAIDPLLALLAVP 197

Query: 404 NNEIYEKAVKILETYWL 420
           +            T+ L
Sbjct: 198 DLSTLACGYLRNLTWTL 214

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 44.2 bits (104), Expect = 7e-05
 Identities = 23/149 (15%), Positives = 42/149 (28%), Gaps = 14/149 (9%)

Query: 268 KKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHE 327
                 T  +  A              V  +V  + +   + + +A  A     S     
Sbjct: 32  DSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQP 91

Query: 328 QIKYLVREGCIKPLCDLFVCPD-PRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQL 386
            I  ++R G I          D   I       L NI              +  ++  + 
Sbjct: 92  PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNI-------------ASGTSEQTKA 138

Query: 387 VEEAEGLEKIENLQSHDNNEIYEKAVKIL 415
           V +   +    +L +  +  I E+AV  L
Sbjct: 139 VVDGGAIPAFISLLASPHAHISEQAVWAL 167

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  349 bits (896), Expect = e-114
 Identities = 71/448 (15%), Positives = 135/448 (30%), Gaps = 19/448 (4%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           +V  + + +       T      LS  R      + +SG +P  V+ L       + F A
Sbjct: 61  IVRTMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGGIPALVKMLGSPV-DSVLFYA 118

Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
              L N+          V   G +   V LL   +          L  +A  +   + ++
Sbjct: 119 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 178

Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 180
           L+ G    L+  +       +L   +  L          P       + AL   +    +
Sbjct: 179 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ 238

Query: 181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240
            ++ +  W L  LSD    +       G+   LV+LLG    +V+  A   + N+   + 
Sbjct: 239 RLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 295

Query: 241 FQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWTISNITAGNRD---QIQAVIDAGLVG 296
                +   G +  L+  +  +  ++ I + A   + ++T+ +++      AV     + 
Sbjct: 296 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLP 355

Query: 297 PLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVC 356
            +V LL         +A   +    +         L  +G I  L  L V          
Sbjct: 356 VVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDTQRRT 414

Query: 357 LEGLENILKVGEAEKNMGTA--------TADVNQYAQLVEEAEGLEKIENLQSHDNNEIY 408
             G      V                   A       ++     +     L       I 
Sbjct: 415 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQ 474

Query: 409 EKAVKILETYWLEEDD-ETIAAGDGPQP 435
             A  +L     +++  E I A     P
Sbjct: 475 RVAAGVLCELAQDKEAAEAIEAEGATAP 502

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  237 bits (606), Expect = 1e-71
 Identities = 65/386 (16%), Positives = 134/386 (34%), Gaps = 24/386 (6%)

Query: 32  IEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL 91
            +  + +  +P   + L  ED   +  +AA  +  ++   +    ++     V   V+ +
Sbjct: 7   DDAELATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 65

Query: 92  ASPSD-DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS 150
            + +D +        L N++         +   G +  L+  L      S+L  A  TL 
Sbjct: 66  QNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVD-SVLFYAITTLH 123

Query: 151 NFCRGKPQPPFDQVRP--ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAG 208
           N    +       VR    L  +  L++  + + L      L  L+ G  +    ++ +G
Sbjct: 124 NLLLHQEGAK-MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG 182

Query: 209 VCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIK 268
               LV ++   +   L+     V  +++        I+  G +  L   LT    + + 
Sbjct: 183 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLV 241

Query: 269 KEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQ 328
           +   WT+ N++     Q       GL+G LV LL + + ++   AA  +SN T     + 
Sbjct: 242 QNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY-KN 297

Query: 329 IKYLVREGCIKPLCDLFV--CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQL 386
              + + G I+ L    +       I    +  L ++           +   +       
Sbjct: 298 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT----------SRHQEAEMAQNA 347

Query: 387 VEEAEGLEKIENLQSHDNNEIYEKAV 412
           V    GL  +  L    ++    KA 
Sbjct: 348 VRLHYGLPVVVKLLHPPSHWPLIKAT 373

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  217 bits (554), Expect = 4e-64
 Identities = 59/345 (17%), Positives = 116/345 (33%), Gaps = 20/345 (5%)

Query: 73  ENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQ 132
                 +   A+P   KLL      V  +A   +  ++        ++ S   +  ++  
Sbjct: 5   YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64

Query: 133 LNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSY 192
           +     +   R    TL N    +           +PAL +++ S  + VL  A   L  
Sbjct: 65  MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 124

Query: 193 LSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGAL 252
           L         AV  AG   ++V LL   +   L      +  +  G+      I+  G  
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 184

Query: 253 PYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKE 312
             L+ ++     + +       +  + +       A+++AG +  L   L +    + + 
Sbjct: 185 QALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQN 243

Query: 313 AAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKN 372
             W + N +   T +       EG +  L  L    D  +VT     L N+         
Sbjct: 244 CLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNL--------- 290

Query: 373 MGTATADVNQYAQLVEEAEGLEKIENL--QSHDNNEIYEKAVKIL 415
               T +  +   +V +  G+E +     ++ D  +I E A+  L
Sbjct: 291 ----TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  191 bits (487), Expect = 1e-54
 Identities = 62/355 (17%), Positives = 115/355 (32%), Gaps = 33/355 (9%)

Query: 7   SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTN 66
           +      L  T++  K+LS+  S     ++++G +      L      +L     W L N
Sbjct: 193 TYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPS-QRLVQNCLWTLRN 250

Query: 67  IASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGAL 126
           ++      TK     G +   V+LL S   +V   A   L N+  ++ + + +V   G +
Sbjct: 251 LSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 307

Query: 127 IPLLAQLNER-AKLSMLRNATWTLSNFCRGKPQPPFDQVRP----ALPALAQLVHSNDEE 181
             L+  +     +  +   A   L +      +    Q        LP + +L+H     
Sbjct: 308 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 367

Query: 182 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF 241
            L  A   L             + E G  PRLV+LL                     +  
Sbjct: 368 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 427

Query: 242 QT---------------------QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 280
           +                        I     +P  + LL    +  I++ A   +  + A
Sbjct: 428 RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIEN-IQRVAAGVLCEL-A 485

Query: 281 GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVRE 335
            +++  +A+   G   PL  LL +    +   AA  +   +     +  K L  E
Sbjct: 486 QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVE 540

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  148 bits (374), Expect = 6e-39
 Identities = 59/317 (18%), Positives = 100/317 (31%), Gaps = 31/317 (9%)

Query: 7   SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFL-MREDYPQLQFEAAWALT 65
           SDD ++   A      L +         V Q G +   V  +    D   +   A  AL 
Sbjct: 274 SDDINVVTCAAGILSNL-TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 332

Query: 66  NIASGTSENTKV---VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLS 122
           ++ S   E       V  H  +P+ VKLL  PS     +A   L       P     +  
Sbjct: 333 HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLRE 392

Query: 123 QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEV 182
           QGA IP L QL  RA     R  +   +                       +     EE+
Sbjct: 393 QGA-IPRLVQLLVRAHQDTQRRTSMGGTQ-------------------QQFVEGVRMEEI 432

Query: 183 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ 242
           +     AL  L+   +++   +      P  V+LL  P  ++   A   +  +    +  
Sbjct: 433 VEGCTGALHILARDVHNR-IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA 491

Query: 243 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLL 302
            + I   GA   L  LL   ++  +   A   +  ++       +  +   L     +L 
Sbjct: 492 -EAIEAEGATAPLTELLHSRNEG-VATYAAAVLFRMSEDKPQDYKKRLSVEL---TSSLF 546

Query: 303 QNAEFDIKKEAAWAISN 319
           +       + A   +  
Sbjct: 547 RTEPMAWNETADLGLDI 563

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  114 bits (286), Expect = 2e-27
 Identities = 28/220 (12%), Positives = 82/220 (37%), Gaps = 18/220 (8%)

Query: 198 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLG 257
           N +  A +     P L +LL      V+  A   V  +   +  +   + +   +  ++ 
Sbjct: 4   NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63

Query: 258 LLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAI 317
            + +++     +    T+ N+ + +R+ + A+  +G +  LV +L +    +   A   +
Sbjct: 64  TMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122

Query: 318 SNATSGGTHEQIKYLVRE-GCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTA 376
            N       E  K  VR  G ++ +  L    + + + +  + L+ +             
Sbjct: 123 HNLLLH--QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL------------- 167

Query: 377 TADVNQYAQLVEEAEGLEK-IENLQSHDNNEIYEKAVKIL 415
                +   ++  + G +  +  ++++   ++     ++L
Sbjct: 168 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 207

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  102 bits (255), Expect = 2e-23
 Identities = 53/262 (20%), Positives = 81/262 (30%), Gaps = 30/262 (11%)

Query: 7   SDDSSLQLEATTQFRKLLSI--ERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWAL 64
            D   +   A    R L S   E       V     +P  V+ L    +  L  +A   L
Sbjct: 318 GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI-KATVGL 376

Query: 65  TNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVR----------------------EQA 102
               +    N   + + GA+P  V+LL     D +                      E  
Sbjct: 377 IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGC 436

Query: 103 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 162
             AL  +A D    R ++      IPL  QL      ++ R A   L    + K      
Sbjct: 437 TGALHILARD-VHNRIVIRGLNT-IPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAI 494

Query: 163 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 222
           +   A   L +L+HS +E V T A   L  +S+   DK Q   +         L      
Sbjct: 495 EAEGATAPLTELLHSRNEGVATYAAAVLFRMSE---DKPQDYKKRLSVELTSSLFRTEPM 551

Query: 223 SVLIPALRTVGNIVTGDDFQTQ 244
           +    A   +     G+    +
Sbjct: 552 AWNETADLGLDIGAQGEPLGYR 573

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 78.1 bits (192), Expect = 2e-15
 Identities = 32/189 (16%), Positives = 52/189 (27%), Gaps = 13/189 (6%)

Query: 8   DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNI 67
               +    T     L     +     +     +P FV+ L+      +Q  AA  L  +
Sbjct: 428 RMEEIVEGCTGALHILARDVHN--RIVIRGLNTIPLFVQ-LLYSPIENIQRVAAGVLCEL 484

Query: 68  ASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALI 127
           A    E  + +   GA     +LL S ++ V   A   L  ++ D P+     LS     
Sbjct: 485 AQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTS 543

Query: 128 PLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDAC 187
            L               A   L    +G+P               +  HS          
Sbjct: 544 SLFRTEPMAWN----ETADLGLDIGAQGEPLG-----YRQDDPSYRSFHSGGYGQDALGM 594

Query: 188 WALSYLSDG 196
             +     G
Sbjct: 595 DPMMEHEMG 603

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  342 bits (879), Expect = e-113
 Identities = 71/441 (16%), Positives = 133/441 (30%), Gaps = 20/441 (4%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           +V  + + +       T      LS  R      + +SG +P  V+ L       + F A
Sbjct: 64  IVRTMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGGIPALVKMLGSPV-DSVLFYA 121

Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
              L N+          V   G +   V LL   +          L  +A  +   + ++
Sbjct: 122 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 181

Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 180
           L+ G    L+  +       +L   +  L          P       + AL   +    +
Sbjct: 182 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ 241

Query: 181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240
            ++ +  W L  LSD    +       G+   LV+LLG    +V+  A   + N+   + 
Sbjct: 242 RLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 298

Query: 241 FQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWTISNITAGNRD---QIQAVIDAGLVG 296
                +   G +  L+  +  +  ++ I + A   + ++T+ +++      AV     + 
Sbjct: 299 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLP 358

Query: 297 PLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVC 356
            +V LL         +A   +    +         L  +G I  L  L V          
Sbjct: 359 VVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDTQRRT 417

Query: 357 LEGLENILKVGEAEKNMGTA--------TADVNQYAQLVEEAEGLEKIENLQSHDNNEIY 408
             G      V                   A       ++     +     L       I 
Sbjct: 418 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQ 477

Query: 409 EKAVKILETYWLEEDDETIAA 429
             A  +L    L +D E   A
Sbjct: 478 RVAAGVLCE--LAQDKEAAEA 496

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  263 bits (675), Expect = 7e-83
 Identities = 82/437 (18%), Positives = 141/437 (32%), Gaps = 25/437 (5%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           +   +  +D  +  +A     +L   E S     +    +V   V  +   +  +     
Sbjct: 22  LTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETARCT 80

Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           A  L N+ S   E    +   G +P  VK+L SP D V   A+  L N+       +  V
Sbjct: 81  AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 139

Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRP-ALPALAQLVHSND 179
              G L  ++A LN+   +  L   T  L     G  +     +      AL  ++ +  
Sbjct: 140 RLAGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 198

Query: 180 EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD 239
            E L      +  +    +    A++EAG    L   L  PS  ++   L T+ N+    
Sbjct: 199 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---S 255

Query: 240 DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLV 299
           D  T+     G L  L+ LL       +   A   +SN+T  N      V   G +  LV
Sbjct: 256 DAATKQEGMEGLLGTLVQLLGSDDIN-VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 314

Query: 300 NLLQNA--EFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
             +  A    DI + A  A+ + TS           +     +  +  L   P    +  
Sbjct: 315 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK 374

Query: 356 CLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKIL 415
              GL   L +  A                 + E   + ++  L    + +   +     
Sbjct: 375 ATVGLIRNLALCPANH-------------APLREQGAIPRLVQLLVRAHQDTQRRTSMGG 421

Query: 416 ETYWLEEDDETIAAGDG 432
                 E        +G
Sbjct: 422 TQQQFVEGVRMEEIVEG 438

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  251 bits (643), Expect = 4e-78
 Identities = 68/435 (15%), Positives = 133/435 (30%), Gaps = 47/435 (10%)

Query: 7   SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTN 66
           S   S+   A T    L  + +      V  +G + + V  L+ +   +        L  
Sbjct: 112 SPVDSVLFYAITTLHNL-LLHQEGAKMAVRLAGGLQKMVA-LLNKTNVKFLAITTDCLQI 169

Query: 67  IASGTSENTKVVIDHGAVPIFVKLLASPSD-DVREQAVWALGNVAGDSPRCRDLVLSQGA 125
           +A G  E+  +++  G     V ++ + +   +       L  ++      +  ++  G 
Sbjct: 170 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGG 228

Query: 126 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTD 185
           +  L   L +     +++N  WTL N      +   + +   L  L QL+ S+D  V+T 
Sbjct: 229 MQALGLHLTD-PSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTC 285

Query: 186 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELL--GHPSPSVLIPALRTVGNIVTGDDF-- 241
           A   LS L+         V + G    LV  +        +  PA+  + ++ +      
Sbjct: 286 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE 345

Query: 242 -QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 300
                +  +  LP ++ LL          +A   +    A        + + G +  LV 
Sbjct: 346 MAQNAVRLHYGLPVVVKLLHPPSHW-PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQ 404

Query: 301 LLQNAEFDIKKEAAWAISNATSGG--------------------THEQIKYLVREGCIKP 340
           LL  A  D ++  +   +                                 +     I  
Sbjct: 405 LLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPL 464

Query: 341 LCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ 400
              L   P   I  V    L  +              A   + A+ +E       +  L 
Sbjct: 465 FVQLLYSPIENIQRVAAGVLCEL--------------AQDKEAAEAIEAEGATAPLTELL 510

Query: 401 SHDNNEIYEKAVKIL 415
              N  +   A  +L
Sbjct: 511 HSRNEGVATYAAAVL 525

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  230 bits (589), Expect = 3e-70
 Identities = 61/355 (17%), Positives = 121/355 (34%), Gaps = 23/355 (6%)

Query: 63  ALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLS 122
           A+ N+ +         +   A+P   KLL      V  +A   +  ++        ++ S
Sbjct: 1   AVVNLIN---YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57

Query: 123 QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEV 182
              +  ++  +     +   R    TL N    +           +PAL +++ S  + V
Sbjct: 58  PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 117

Query: 183 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ 242
           L  A   L  L         AV  AG   ++V LL   +   L      +  +  G+   
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177

Query: 243 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLL 302
              I+  G    L+ ++     + +       +  + +       A+++AG +  L   L
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHL 236

Query: 303 QNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLEN 362
            +    + +   W + N +   T +       EG +  L  L    D  +VT     L N
Sbjct: 237 TDPSQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 292

Query: 363 ILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENL--QSHDNNEIYEKAVKIL 415
           +             T +  +   +V +  G+E +     ++ D  +I E A+  L
Sbjct: 293 L-------------TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  217 bits (554), Expect = 4e-65
 Identities = 62/389 (15%), Positives = 136/389 (34%), Gaps = 23/389 (5%)

Query: 32  IEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL 91
            +  + +  +P   + L  ED   +  +AA  +  ++   +    ++     V   V+ +
Sbjct: 10  DDAELATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 68

Query: 92  ASPSD-DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS 150
            + +D +        L N++         +   G +  L+  L      S+L  A  TL 
Sbjct: 69  QNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVD-SVLFYAITTLH 126

Query: 151 NFCRGKPQPPFDQVRP-ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV 209
           N    +            L  +  L++  + + L      L  L+ G  +    ++ +G 
Sbjct: 127 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 186

Query: 210 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKK 269
              LV ++   +   L+     V  +++        I+  G +  L   LT   ++ + +
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQR-LVQ 245

Query: 270 EACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQI 329
              WT+ N++     Q       GL+G LV LL + + ++   AA  +SN T     +  
Sbjct: 246 NCLWTLRNLSDAATKQEGM---EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY-KNK 301

Query: 330 KYLVREGCIKPLCDLFV--CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLV 387
             + + G I+ L    +       I    +  L ++           +   +       V
Sbjct: 302 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL----------TSRHQEAEMAQNAV 351

Query: 388 EEAEGLEK-IENLQSHDNNEIYEKAVKIL 415
               GL   ++ L    +  + +  V ++
Sbjct: 352 RLHYGLPVVVKLLHPPSHWPLIKATVGLI 380

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  191 bits (487), Expect = 2e-55
 Identities = 62/362 (17%), Positives = 117/362 (32%), Gaps = 34/362 (9%)

Query: 7   SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTN 66
           +      L  T++  K+LS+  S     ++++G +       + +   +L     W L N
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGL-HLTDPSQRLVQNCLWTLRN 253

Query: 67  IASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGAL 126
           ++      TK     G +   V+LL S   +V   A   L N+  ++ + + +V   G +
Sbjct: 254 LSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 310

Query: 127 IPLLAQL-NERAKLSMLRNATWTLSNFCRGKPQPPFDQVR----PALPALAQLVHSNDEE 181
             L+  +     +  +   A   L +      +    Q        LP + +L+H     
Sbjct: 311 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 370

Query: 182 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF 241
            L  A   L             + E G  PRLV+LL                     +  
Sbjct: 371 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 430

Query: 242 QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNL 301
           + + I+                      E C    +I A +      +     +   V L
Sbjct: 431 RMEEIV----------------------EGCTGALHILARDVHNRIVIRGLNTIPLFVQL 468

Query: 302 LQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLE 361
           L +   +I++ AA  +         E  + +  EG   PL +L    +  + T     L 
Sbjct: 469 LYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 526

Query: 362 NI 363
            +
Sbjct: 527 RM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  129 bits (325), Expect = 9e-33
 Identities = 57/277 (20%), Positives = 92/277 (33%), Gaps = 28/277 (10%)

Query: 7   SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFL-MREDYPQLQFEAAWALT 65
           SDD ++   A      L +         V Q G +   V  +    D   +   A  AL 
Sbjct: 277 SDDINVVTCAAGILSNL-TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 335

Query: 66  NIASGTSENTKV---VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLS 122
           ++ S   E       V  H  +P+ VKLL  PS     +A   L       P     +  
Sbjct: 336 HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLRE 395

Query: 123 QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEV 182
           QGA IP L QL  RA     R  +   +                       +     EE+
Sbjct: 396 QGA-IPRLVQLLVRAHQDTQRRTSMGGTQ-------------------QQFVEGVRMEEI 435

Query: 183 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ 242
           +     AL  L+   +++I  +      P  V+LL  P  ++   A   +  +    +  
Sbjct: 436 VEGCTGALHILARDVHNRI-VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA 494

Query: 243 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 279
            + I   GA   L  LL   ++  +   A   +  ++
Sbjct: 495 -EAIEAEGATAPLTELLHSRNEG-VATYAAAVLFRMS 529

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  289 bits (742), Expect = 2e-96
 Identities = 98/250 (39%), Positives = 143/250 (57%), Gaps = 15/250 (6%)

Query: 167 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 226
            LP + Q ++S+D +    A    S +    N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 13  ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 227 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 286
            AL  + NI +G + Q Q +I  GALP L+ LL+  +++ I +EA W +SNI +G  +QI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQI 131

Query: 287 QAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV 346
           QAVIDAG +  LV LL +    I +EA WA+SN  SGG +EQI+ ++  G +  L  L  
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLS 190

Query: 347 CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNE 406
            P+ +I+   L  L NI   G              +  Q V+EA  LEK+E LQSH+N +
Sbjct: 191 SPNEQILQEALWALSNIASGGN-------------EQKQAVKEAGALEKLEQLQSHENEK 237

Query: 407 IYEKAVKILE 416
           I ++A + LE
Sbjct: 238 IQKEAQEALE 247

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  271 bits (696), Expect = 2e-89
 Identities = 88/238 (36%), Positives = 135/238 (56%), Gaps = 4/238 (1%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           M   + SDD   QL AT +F ++LS + +  I+ VI +G +P  V+ L   +  Q+  EA
Sbjct: 17  MTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPN-EQILQEA 74

Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
            WAL+NIASG +E  + VID GA+P  V+LL+SP++ + ++A+WAL N+A         V
Sbjct: 75  LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134

Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVR-PALPALAQLVHSND 179
           +  GA +P L QL       +L+ A W LSN   G  +     +   ALPAL QL+ S +
Sbjct: 135 IDAGA-LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 193

Query: 180 EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT 237
           E++L +A WALS ++ G N++ QAV EAG   +L +L  H +  +   A   +  + +
Sbjct: 194 EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 30/133 (22%), Positives = 50/133 (37%), Gaps = 14/133 (10%)

Query: 283 RDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLC 342
           R           +  +   L + +   +  A    S   S G +EQI+ ++  G +  L 
Sbjct: 2   RGSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALV 60

Query: 343 DLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH 402
            L   P+ +I+   L  L NI            A+    Q  Q V +A  L  +  L S 
Sbjct: 61  QLLSSPNEQILQEALWALSNI------------ASGGNEQ-IQAVIDAGALPALVQLLSS 107

Query: 403 DNNEIYEKAVKIL 415
            N +I ++A+  L
Sbjct: 108 PNEQILQEALWAL 120

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  301 bits (771), Expect = 1e-94
 Identities = 72/441 (16%), Positives = 134/441 (30%), Gaps = 20/441 (4%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           +V  + + +       T+     LS  R   +  + +SG +P  V  L       + F A
Sbjct: 197 IVRTMQNTNDVETARCTSGTLHNLSHHREGLLA-IFKSGGIPALVNML-GSPVDSVLFHA 254

Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
              L N+          V   G +   V LL   +          L  +A  +   + ++
Sbjct: 255 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 314

Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 180
           L+ G    L+  +       +L   +  L          P       + AL   +    +
Sbjct: 315 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ 374

Query: 181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240
            ++ +  W L  LSD    +       G+   LV+LLG    +V+  A   + N+   + 
Sbjct: 375 RLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 431

Query: 241 FQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWTISNITAGNRD---QIQAVIDAGLVG 296
                +   G +  L+  +  +  ++ I + A   + ++T+ ++D      AV     + 
Sbjct: 432 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLP 491

Query: 297 PLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVC 356
            +V LL         +A   +    +         L  +G I  L  L V          
Sbjct: 492 VVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDTQRRT 550

Query: 357 LEGLENILKVGEAEKNMGTA--------TADVNQYAQLVEEAEGLEKIENLQSHDNNEIY 408
             G      V                   A       ++     +     L       I 
Sbjct: 551 SMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQ 610

Query: 409 EKAVKILETYWLEEDDETIAA 429
             A  +L    L +D E   A
Sbjct: 611 RVAAGVL--CELAQDKEAAEA 629

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  256 bits (655), Expect = 1e-77
 Identities = 70/419 (16%), Positives = 134/419 (31%), Gaps = 27/419 (6%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYP-QLQFE 59
                   D   Q   T   R      R+    E +  G+     +F        Q   E
Sbjct: 72  SFNQEQVADIDGQYAMTRAQR-----VRAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAE 126

Query: 60  AAWALTNIASG-TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD 118
            +  L +      +      +   A+P   KLL      V  +A   +  ++        
Sbjct: 127 PSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA 186

Query: 119 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN 178
           ++ S   +  ++  +     +   R  + TL N    +           +PAL  ++ S 
Sbjct: 187 IMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSP 246

Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
            + VL  A   L  L         AV  AG   ++V LL   +   L      +  +  G
Sbjct: 247 VDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 306

Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
           +      I+  G    L+ ++  ++           +  + +       A+++AG +  L
Sbjct: 307 NQESKLIILASGGPQALVNIM-RTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQAL 365

Query: 299 VNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE 358
              L +    + +   W + N +   T +       EG +  L  L    D  +VT    
Sbjct: 366 GLHLTDPSQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAG 421

Query: 359 GLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENL--QSHDNNEIYEKAVKIL 415
            L N+             T +  +   +V +  G+E +     ++ D  +I E A+  L
Sbjct: 422 ILSNL-------------TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  218 bits (557), Expect = 1e-63
 Identities = 69/426 (16%), Positives = 131/426 (30%), Gaps = 34/426 (7%)

Query: 7   SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTN 66
           +      L  T++  K+LS+  S     ++++G +      L      +L     W L N
Sbjct: 329 TYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPS-QRLVQNCLWTLRN 386

Query: 67  IASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGAL 126
           ++      TK     G +   V+LL S   +V   A   L N+  ++ + + +V   G +
Sbjct: 387 LSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 443

Query: 127 IPLLAQL-NERAKLSMLRNATWTLSNFCRGKPQPPFDQVR----PALPALAQLVHSNDEE 181
             L+  +     +  +   A   L +           Q        LP + +L+H     
Sbjct: 444 EALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHW 503

Query: 182 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF 241
            L  A   L             + E G  PRLV+LL                     +  
Sbjct: 504 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 563

Query: 242 QT---------------------QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 280
           +                        I     +P  + LL    +  I++ A   +  + A
Sbjct: 564 RMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIEN-IQRVAAGVLCEL-A 621

Query: 281 GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKP 340
            +++  +A+   G   PL  LL +    +   AA  +   +     +  K L  E     
Sbjct: 622 QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVE-LTSS 680

Query: 341 LCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ 400
           L             + L+       +G  + +    +     Y Q     + + + E   
Sbjct: 681 LFRTEPMTWNETGDLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDAMGMDPMMEHEMAG 740

Query: 401 SHDNNE 406
            H   +
Sbjct: 741 HHPGPD 746

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  264 bits (676), Expect = 4e-87
 Identities = 80/197 (40%), Positives = 118/197 (59%), Gaps = 2/197 (1%)

Query: 167 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 226
            LP + Q ++S D++ L  A   LS ++ G N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 13  ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 227 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 286
            AL  + NI +G + Q Q +I  GALP L+ LL+  +++ I +EA W +SNI +G  +QI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQI 131

Query: 287 QAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV 346
           QAVIDAG +  LV LL +    I +EA WA+SN  SGG +EQ + +   G ++ L  L  
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQS 190

Query: 347 CPDPRIVTVCLEGLENI 363
             + +I     E LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  214 bits (548), Expect = 6e-68
 Identities = 80/217 (36%), Positives = 116/217 (53%), Gaps = 15/217 (6%)

Query: 202 QAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH 261
                    P++V+ L  P    L  ALR +  I +G + Q Q +I  GALP L+ LL+ 
Sbjct: 6   HHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS 65

Query: 262 SHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT 321
            +++ I +EA W +SNI +G  +QIQAVIDAG +  LV LL +    I +EA WA+SN  
Sbjct: 66  PNEQ-ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 124

Query: 322 SGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVN 381
           S G +EQI+ ++  G +  L  L   P+ +I+   L  L NI   G              
Sbjct: 125 S-GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN------------- 170

Query: 382 QYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETY 418
           +  Q V+EA  LEK+E LQSH+N +I ++A + LE  
Sbjct: 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  182 bits (465), Expect = 1e-55
 Identities = 69/206 (33%), Positives = 108/206 (52%), Gaps = 3/206 (1%)

Query: 33  EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA 92
                   +P+ V+ L   D  Q    A   L+ IASG +E  + VID GA+P  V+LL+
Sbjct: 6   HHHHHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS 64

Query: 93  SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 152
           SP++ + ++A+WAL N+A         V+  GAL  L+  L+      +L+ A W LSN 
Sbjct: 65  SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNI 123

Query: 153 CRGKPQPPFDQVRP-ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 211
             G  +     +   ALPAL QL+ S +E++L +A WALS ++ G N++ QAV EAG   
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALE 183

Query: 212 RLVELLGHPSPSVLIPALRTVGNIVT 237
           +L +L  H +  +   A   +  + +
Sbjct: 184 KLEQLQSHENEKIQKEAQEALEKLQS 209

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  243 bits (622), Expect = 3e-77
 Identities = 66/351 (18%), Positives = 114/351 (32%), Gaps = 35/351 (9%)

Query: 13  QLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS 72
           Q+ A  +          P +++              M          A   L  + S   
Sbjct: 15  QIRAYCETCWEWQEAHEPGMDQDKN----------PMPAPVEHQICPAVCVLMKL-SFDE 63

Query: 73  ENTKVVIDHGAVPIFVKLLASPSD-----------DVREQAVWALGNVAGDSPRCRDLVL 121
           E+   + + G +    +LL    +            +R  A  AL N+       +  + 
Sbjct: 64  EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123

Query: 122 SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVR--PALPALAQLV-HSN 178
           S    +  L    +     + +     L N            +R   ++ AL +      
Sbjct: 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK 183

Query: 179 DEEVLTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIP-------ALR 230
            E  L     AL  LS   T +K       G    LV  L + S +  +         LR
Sbjct: 184 KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR 243

Query: 231 TVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI 290
            V +++  ++   Q +     L  LL  L  SH  +I   AC T+ N++A N    +A+ 
Sbjct: 244 NVSSLIATNEDHRQILRENNCLQTLLQHLK-SHSLTIVSNACGTLWNLSARNPKDQEALW 302

Query: 291 DAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG-THEQIKYLVREGCIKP 340
           D G V  L NL+ +    I   +A A+ N  +      +   ++  G   P
Sbjct: 303 DMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSLP 353

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  109 bits (273), Expect = 1e-26
 Identities = 47/222 (21%), Positives = 78/222 (35%), Gaps = 14/222 (6%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           +VA + S+   LQ    +  R L         + + + G V   +E  +           
Sbjct: 132 LVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSV 191

Query: 61  AWALTNIASGTSEN-TKVVIDHGAVPIFVKLLASPSDD----VREQAVWALGNVAG---D 112
             AL N+++  +EN   +    GA+   V  L   S      + E     L NV+     
Sbjct: 192 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT 251

Query: 113 SPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP--QPPFDQVRPALPA 170
           +   R ++     L  LL  L     L+++ NA  TL N     P  Q     +  A+  
Sbjct: 252 NEDHRQILRENNCLQTLLQHLKS-HSLTIVSNACGTLWNLSARNPKDQEALWDMG-AVSM 309

Query: 171 LAQLVHSNDEEVLTDACWALSYLSDG--TNDKIQAVIEAGVC 210
           L  L+HS  + +   +  AL  L        K   ++  G  
Sbjct: 310 LKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSS 351

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 92.2 bits (229), Expect = 8e-21
 Identities = 29/220 (13%), Positives = 69/220 (31%), Gaps = 25/220 (11%)

Query: 206 EAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLL------ 259
                 +    +  P    + PA+  +  +   ++     +   G L  +  LL      
Sbjct: 30  HEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEE-HRHAMNELGGLQAIAELLQVDCEM 88

Query: 260 ----THSHKKSIKKEACWTISNITAGNRDQIQAVI-DAGLVGPLVNLLQNAEFDIKKEAA 314
                  +  ++++ A   ++N+T G+      +    G +  LV  L++   D+++  A
Sbjct: 89  YGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIA 148

Query: 315 WAISNATSGGTHEQIKYLVREGCIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNM 373
             + N +        K L   G +K L +  +       +   L  L N+       K  
Sbjct: 149 SVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK-- 206

Query: 374 GTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVK 413
                     A +      L  +    ++ +       ++
Sbjct: 207 ----------ADICAVDGALAFLVGTLTYRSQTNTLAIIE 236

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 67.9 bits (166), Expect = 1e-12
 Identities = 19/148 (12%), Positives = 44/148 (29%), Gaps = 14/148 (9%)

Query: 228 ALRTVGNIVT-GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 286
            L  +  I    +            +      +    +      A   +  + + + +  
Sbjct: 9   MLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEH-QICPAVCVLMKL-SFDEEHR 66

Query: 287 QAVIDAGLVGPLVNLLQNAEF-----------DIKKEAAWAISNATSGGTHEQIKYLVRE 335
            A+ + G +  +  LLQ                +++ A  A++N T G    +      +
Sbjct: 67  HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126

Query: 336 GCIKPLCDLFVCPDPRIVTVCLEGLENI 363
           GC++ L          +  V    L N+
Sbjct: 127 GCMRALVAQLKSESEDLQQVIASVLRNL 154

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  221 bits (563), Expect = 3e-67
 Identities = 69/451 (15%), Positives = 136/451 (30%), Gaps = 70/451 (15%)

Query: 41  VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 100
           +P+ V++L  +D  + Q   A+ + +         + V   G +   V LL SP+ +V++
Sbjct: 4   IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 101 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 160
            A  AL N+   S   +     Q  +   ++ L       + +  T  L N         
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 161 FDQVRPALPALAQLV----------------HSNDEEVLTDACWALSYLSDGTNDKIQAV 204
            + +  ALP LA  V                   D EV  +A   L  LS     +    
Sbjct: 123 -ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181

Query: 205 IEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHK 264
             +G+   L+  + +   +           +    +   +           L     +  
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241

Query: 265 KSIKKEACWTISNITAGNRDQIQA-------------VIDAGLVGPLVNLLQNAEFDIKK 311
                  C++  +    N +                 +  +  +   +NL+  ++ D   
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301

Query: 312 EAA-WAISNATSG----GTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV 366
           EA   A+ N T+      +       ++E  +  +  L    +  +V      L N+ + 
Sbjct: 302 EACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361

Query: 367 GEAEKNMGTA---------------------------------TADVNQYAQLVEEAEGL 393
               + MG                                    A   Q A+    +  L
Sbjct: 362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSML 421

Query: 394 EKIENL-QSHDNNEIYEKAVKILETYWLEED 423
             I NL +S  + +  E A  +L   W  ++
Sbjct: 422 NNIINLCRSSASPKAAEAARLLLSDMWSSKE 452

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  116 bits (292), Expect = 9e-29
 Identities = 44/308 (14%), Positives = 89/308 (28%), Gaps = 28/308 (9%)

Query: 38  SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL------ 91
           SG              P++ F A   L N++S  +    +    G +   +  +      
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200

Query: 92  ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA--------KLSMLR 143
           +   D   E  +  L N++            Q       A   + +           M  
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260

Query: 144 NATWTLSNFCRG-KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDK-- 200
           N    L       K              L  +  S  +  L     AL  L+        
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320

Query: 201 ---IQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLG 257
                  ++    P++  LL   +  V+      + N+          ++     P +  
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTR 378

Query: 258 LLTHSHKKSIKKE-----ACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFD-IKK 311
           LLT     +   E     AC+T+ N+ A      +    + ++  ++NL +++      +
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAE 438

Query: 312 EAAWAISN 319
            A   +S+
Sbjct: 439 AARLLLSD 446

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 96.1 bits (238), Expect = 1e-21
 Identities = 34/255 (13%), Positives = 78/255 (30%), Gaps = 20/255 (7%)

Query: 166 PALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVL 225
             +P   Q + S DE+      + + +         Q V + G   +LV+LL  P+ +V 
Sbjct: 2   LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61

Query: 226 IPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 285
             A   + N+V               +   + LL  +    I+K+    + N+++   D+
Sbjct: 62  QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST--DE 119

Query: 286 IQAVIDAGLVGPLVNLL----------------QNAEFDIKKEAAWAISNATSGGTHEQI 329
           ++  + A  +  L + +                +  + ++   A   + N +S       
Sbjct: 120 LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSAD--AGR 177

Query: 330 KYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEE 389
           + +     +      +V           + +EN + V         A             
Sbjct: 178 QTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237

Query: 390 AEGLEKIENLQSHDN 404
                +  +     N
Sbjct: 238 RNAYTEKSSTGCFSN 252

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 91.8 bits (227), Expect = 3e-20
 Identities = 34/307 (11%), Positives = 76/307 (24%), Gaps = 20/307 (6%)

Query: 124 GALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVR-PALPALAQLVHSNDEEV 182
           G  IP   Q              + + + C           +   +  L  L+ S ++ V
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60

Query: 183 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGDDF 241
              A  AL  L   +                V LL    +  +       + N+ + D+ 
Sbjct: 61  QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 242 QTQCIITYGALPYLLGLL---------------THSHKKSIKKEACWTISNITAGNRDQI 286
           + +  +   ALP L   +                      +   A   + N+++ +  + 
Sbjct: 121 KEE--LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQ 178

Query: 287 QAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV 346
                +GL+  L+  +QN     + +     +                    + L     
Sbjct: 179 TMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238

Query: 347 CPDPRI-VTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNN 405
                   T C     + +     +  +     +      L         +  +     +
Sbjct: 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKD 298

Query: 406 EIYEKAV 412
              E   
Sbjct: 299 ATLEACA 305

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 64.1 bits (155), Expect = 3e-11
 Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 9/130 (6%)

Query: 34  EVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS 93
             ++   +P+    L++     +    A  L+N++         V+ +   P   +LL S
Sbjct: 326 IGLKEKGLPQIAR-LLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTS 382

Query: 94  ------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATW 147
                  S+D+   A + + N+    P+      S   L  ++      A       A  
Sbjct: 383 HTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARL 442

Query: 148 TLSNFCRGKP 157
            LS+    K 
Sbjct: 443 LLSDMWSSKE 452

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  210 bits (536), Expect = 4e-63
 Identities = 68/298 (22%), Positives = 106/298 (35%), Gaps = 26/298 (8%)

Query: 49  MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-----------PSDD 97
           M          A   L  + S   E+   + + G +    +LL              S  
Sbjct: 157 MPAPVEHQICPAVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSIT 215

Query: 98  VREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 156
           +R  A  AL N+  GD      L   +G +  L+AQL       + +     L N     
Sbjct: 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK-SESEDLQQVIASVLRNLSWRA 274

Query: 157 PQPPFDQVR--PALPALAQLV-HSNDEEVLTDACWALSYLS-DGTNDKIQAVIEAGVCPR 212
                  +R   ++ AL +       E  L     AL  LS   T +K       G    
Sbjct: 275 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAF 334

Query: 213 LVELLGHPSPSVLIP-------ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK 265
           LV  L + S +  +         LR V +++  ++   Q +     L  LL  L  SH  
Sbjct: 335 LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SHSL 393

Query: 266 SIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSG 323
           +I   AC T+ N++A N    +A+ D G V  L NL+ +    I   +A A+ N  + 
Sbjct: 394 TIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  190 bits (485), Expect = 9e-56
 Identities = 59/303 (19%), Positives = 104/303 (34%), Gaps = 26/303 (8%)

Query: 7   SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFL----------MREDYPQL 56
           +        A     KL   E       + + G +    E L                 L
Sbjct: 159 APVEHQICPAVCVLMKLSFDEEHRH--AMNELGGLQAIAELLQVDCEMYGLTNDHYSITL 216

Query: 57  QFEAAWALTNIASGTSENTKVVI-DHGAVPIFVKLLASPSDDVREQAVWALGNVAGD-SP 114
           +  A  ALTN+  G   N   +    G +   V  L S S+D+++     L N++     
Sbjct: 217 RRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV 276

Query: 115 RCRDLVLSQGALIPLLAQLNERAKLSMLRNAT---WTLSNFCRGKPQPPFDQVRPALPAL 171
             +  +   G++  L+    E  K S L++     W LS  C    +     V  AL  L
Sbjct: 277 NSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN-KADICAVDGALAFL 335

Query: 172 AQLV----HSNDEEVLTDACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLGHPSPSV 224
              +     +N   ++      L  +S       D  Q + E      L++ L   S ++
Sbjct: 336 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTI 395

Query: 225 LIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD 284
           +  A  T+ N+   +    + +   GA+  L  L+ HS  K I   +   + N+ A    
Sbjct: 396 VSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI-HSKHKMIAMGSAAALRNLMANRPA 454

Query: 285 QIQ 287
           + +
Sbjct: 455 KYK 457

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  189 bits (482), Expect = 2e-55
 Identities = 69/412 (16%), Positives = 140/412 (33%), Gaps = 62/412 (15%)

Query: 9   DSSLQLEATTQFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMRED-----------YPQL 56
            +  + + +   R LL++  S      + QSG +P  ++ L   D             + 
Sbjct: 42  GTHDKDDMS---RTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEA 98

Query: 57  QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL------------------------LA 92
           +  A+ AL NI     ++ +   +   + +  ++                        + 
Sbjct: 99  RARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMP 158

Query: 93  SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLL----------AQLNERAKLSML 142
           +P +     AV  L  ++ D    R  +   G L  +              N+   +++ 
Sbjct: 159 APVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLR 217

Query: 143 RNATWTLSNFCRGKP--QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDK 200
           R A   L+N   G    +     ++  + AL   + S  E++       L  LS   +  
Sbjct: 218 RYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVN 277

Query: 201 IQAVI-EAGVCPRLVELLGHPS-PSVLIPALRTVGNI-VTGDDFQTQCIITYGALPYLLG 257
            +  + E G    L+E        S L   L  + N+     + +       GAL +L+G
Sbjct: 278 SKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVG 337

Query: 258 LLTHSHKKS---IKKEACWTISNIT---AGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKK 311
            LT+  + +   I +     + N++   A N D  Q + +   +  L+  L++    I  
Sbjct: 338 TLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS 397

Query: 312 EAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENI 363
            A   + N ++    +  + L   G +  L +L       I       L N+
Sbjct: 398 NACGTLWNLSARNP-KDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 448

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  138 bits (349), Expect = 2e-36
 Identities = 59/385 (15%), Positives = 123/385 (31%), Gaps = 53/385 (13%)

Query: 57  QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL------------ASPSDDVREQAVW 104
           + + +  L  + S + ++   +   G +P+ ++LL            +  S + R +A  
Sbjct: 46  KDDMSRTLLAM-SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASA 104

Query: 105 ALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQV 164
           AL N+    P        +  ++ LL Q+             W              + +
Sbjct: 105 ALHNIIHSQP-DDKRGRREIRVLHLLEQIRA------YCETCWEWQEAHEPGMDQDKNPM 157

Query: 165 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL------- 217
                       +  E  +  A   L  LS     +  A+ E G    + ELL       
Sbjct: 158 P-----------APVEHQICPAVCVLMKLSFDEEHR-HAMNELGGLQAIAELLQVDCEMY 205

Query: 218 ----GHPSPSVLIPALRTVGNIVTGDDFQTQCIITY-GALPYLLGLLTHSHKKSIKKEAC 272
                H S ++   A   + N+  GD      + +  G +  L+  L  S  + +++   
Sbjct: 206 GLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIA 264

Query: 273 WTISNITAGNRDQIQAVI-DAGLVGPLVNLLQNAEFD-IKKEAAWAISNATSGGTHEQIK 330
             + N++       +  + + G V  L+      + +   K    A+ N ++  T  +  
Sbjct: 265 SVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 324

Query: 331 YLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEA 390
               +G +  L               +E    IL      +N+ +  A    + Q++ E 
Sbjct: 325 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGIL------RNVSSLIATNEDHRQILREN 378

Query: 391 EGLEKIENLQSHDNNEIYEKAVKIL 415
             L+ +       +  I   A   L
Sbjct: 379 NCLQTLLQHLKSHSLTIVSNACGTL 403

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  209 bits (531), Expect = 2e-61
 Identities = 78/471 (16%), Positives = 151/471 (32%), Gaps = 67/471 (14%)

Query: 10  SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 69
           + L          L S+ +  P     +   +P  +  L       ++  AA  L ++  
Sbjct: 19  APLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCY 77

Query: 70  GTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA-GDSPRCRDLVLSQGALIP 128
              +    V     +P+ V LL  P  +V   A  AL N++ G     +  + +   +  
Sbjct: 78  RNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPA 137

Query: 129 LLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV------------- 175
           L+  L +   + +    T TL N          + V  AL AL   V             
Sbjct: 138 LVRLLRKARDMDLTEVITGTLWN-LSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNE 196

Query: 176 -----HSNDEEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLGH---------- 219
                H   E VLT+    L  +S   ++  + + E  G+   L+ ++            
Sbjct: 197 DCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSK 256

Query: 220 ---------------------PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGL 258
                                 +      A     N  T      + +     +   + L
Sbjct: 257 LVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISL 316

Query: 259 LTHSHKKSIKKEACWTISNITAGNRDQI----QAVIDAGLVGPLVNLLQNAEFDIKKEAA 314
           L  S   +I + +   I N+ AG          A+     +  + +LL N    + K A+
Sbjct: 317 LKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAAS 376

Query: 315 WAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMG 374
            A+ N        + K L+ +  I  L      P  +  +      + ++ +      + 
Sbjct: 377 GALRNLAV---DARNKELIGKHAIPNLVKN--LPGGQQNSSWNFSEDTVISILNTINEV- 430

Query: 375 TATADVNQYAQLVEEAEGLEKIENLQSHDNNE--IYEKAVKILETYWLEED 423
              A+  + A+ + E +G+EK+  +    N        A  +L+T W  ++
Sbjct: 431 --IAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  110 bits (275), Expect = 3e-26
 Identities = 54/378 (14%), Positives = 108/378 (28%), Gaps = 70/378 (18%)

Query: 7   SDDSSLQLEATTQFRKLLSIERSPPI-EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALT 65
                + L A    +  +S  R       +     VP  V  L +     L       L 
Sbjct: 101 HPKKEVHLGACGALK-NISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLW 159

Query: 66  NIASGTSENTKVVIDHGAVPIFVKLLASP------------------SDDVREQAVWALG 107
           N++S   ++ K+ I   A+      +  P                   + V       L 
Sbjct: 160 NLSS--HDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLR 217

Query: 108 NVAGDSPRCRDLVLSQGALIPLLAQL------NERAKLSMLRNATWTLSNFCRGKPQPPF 161
           NV+ +    R  +     L+  L  +       + +   ++ N    L N      +   
Sbjct: 218 NVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIP 277

Query: 162 DQVRP--------------------------ALPALAQLV-HSNDEEVLTDACWALSYLS 194
              R                            +     L+  S    +L  +  A+  L 
Sbjct: 278 QAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLC 337

Query: 195 DGT----NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYG 250
            G          A+ +      + +LL +    V+  A   + N+      + + +I   
Sbjct: 338 AGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA--RNKELIGKH 395

Query: 251 ALPYLLGLLTHSHKKSIKK-------EACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQ 303
           A+P L+  L    + S              TI+ + A N +  + + +   +  LV + +
Sbjct: 396 AIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINK 455

Query: 304 NAEFDIK--KEAAWAISN 319
           +     K  + AA  +  
Sbjct: 456 SGNRSEKEVRAAALVLQT 473

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 57.7 bits (138), Expect = 4e-09
 Identities = 28/165 (16%), Positives = 52/165 (31%), Gaps = 17/165 (10%)

Query: 6   WSDDSSLQLEATTQFRKLLSIERSPPIE---EVIQSGVVPRFVEFLMREDYPQLQFEAAW 62
            S   ++   +    + L +   +        + Q   +    + L  E   ++   A+ 
Sbjct: 319 ESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEH-ERVVKAASG 377

Query: 63  ALTNIASGTSENTKVVIDHGAVPIFVKLLAS--------PSDDVREQAVWALGNVAGDSP 114
           AL N+A       K +I   A+P  VK L           S+D     +  +  V  ++ 
Sbjct: 378 ALRNLAVD--ARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENL 435

Query: 115 RCRDLVLSQGALIPLLAQLNERAKLS--MLRNATWTLSNFCRGKP 157
                +      I  L  +N+    S   +R A   L      K 
Sbjct: 436 EAAKKLRETQG-IEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  166 bits (421), Expect = 3e-48
 Identities = 39/238 (16%), Positives = 81/238 (34%), Gaps = 3/238 (1%)

Query: 36  IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPS 95
           + S  +P       +    Q +  A   L ++              G   +  + L + +
Sbjct: 36  VLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGA 95

Query: 96  DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 155
             +R +A   +G  + +    ++ VL  GAL  LL  L+  A  ++   A + +S   R 
Sbjct: 96  AGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE 155

Query: 156 KPQPPFDQVR-PALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 214
           +       +R      L + +    +++   + + L  L  G  +    +   G+  +LV
Sbjct: 156 QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV 215

Query: 215 ELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEAC 272
            L+           L  + ++VT      +          L  LL H  +   + E  
Sbjct: 216 ALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE--PELGLEELLRHRCQLLQQHEEY 271

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  145 bits (367), Expect = 3e-40
 Identities = 43/264 (16%), Positives = 96/264 (36%), Gaps = 9/264 (3%)

Query: 165 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSV 224
           +P  P   +   + D++    A   L+ L +  ++       +G+   +   L   +  +
Sbjct: 39  QPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGL 98

Query: 225 LIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD 284
              A + +G          + ++  GAL  LL LL      +++ +A + IS +      
Sbjct: 99  RWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA 158

Query: 285 QIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDL 344
            +   +       L+  +Q     +K ++A+ + N   G   E    L   G ++ L  L
Sbjct: 159 GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP-EHKGTLCSMGMVQQLVAL 217

Query: 345 FVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDN 404
                       L  L +++   +  + +           +L+       + + LQ H+ 
Sbjct: 218 VRTEHSPFHEHVLGALCSLVT--DFPQGVRECREPELGLEELLR-----HRCQLLQQHEE 270

Query: 405 N-EIYEKAVKILETYWLEEDDETI 427
             E  E   K+L+T +    D+++
Sbjct: 271 YQEELEFCEKLLQTCFSSPADDSM 294

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 92.0 bits (228), Expect = 5e-21
 Identities = 23/177 (12%), Positives = 60/177 (33%), Gaps = 5/177 (2%)

Query: 7   SDDSSLQLEATTQFRKLLSIERSPPI-EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALT 65
           +  + L+  A               I E+V+  G + + +  L R+    ++ +A +A++
Sbjct: 93  AGAAGLRWRAAQLIGTCSQ--NVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAIS 150

Query: 66  NIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA 125
            +           +      + ++ +      ++ ++ + L N+    P  +  + S G 
Sbjct: 151 CLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM 210

Query: 126 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEV 182
            +  L  L          +    L +     PQ    + R     L +L+    + +
Sbjct: 211 -VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQ-GVRECREPELGLEELLRHRCQLL 265

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  165 bits (417), Expect = 2e-44
 Identities = 61/466 (13%), Positives = 140/466 (30%), Gaps = 60/466 (12%)

Query: 10  SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 69
            S    A+    ++         +       +  +++  +     + +     A+T + +
Sbjct: 218 GSSSTIASVCLARIYENMYYDEAKARFTD-QIDEYIKDKLLAPDMESKVRVTVAITALLN 276

Query: 70  GTSE-NTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIP 128
           G  +   +VV   G + + + +  +  +  +  A   L   +         +  QG  + 
Sbjct: 277 GPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKD-KAKALCEQG--VD 333

Query: 129 LLAQLNERAKLSMLRNATWTLSNFC-----RGKPQPPFDQVRPALPALAQ---LVHSNDE 180
           +L +L       +   A   L             +P  D     L    +   +    D+
Sbjct: 334 ILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDK 393

Query: 181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240
           ++   A   L+YL+     K + + +      L++L    + S L   + T  N+    +
Sbjct: 394 DIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYE 453

Query: 241 FQT--------------------------------QCIITYGALPYLLGLLTHSHKKSIK 268
            Q                                   +   G    L  L       + +
Sbjct: 454 KQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTES-HNSQ 512

Query: 269 KEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN-ATSGGTHE 327
           +     ++ +  G ++    V+  G V  L+ +        K+ A  A++    +     
Sbjct: 513 ELIARVLNAV-CGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEV 571

Query: 328 QIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLV 387
                     I+PL +L            L+     L+  E+   +    +      Q +
Sbjct: 572 SFSGQRSLDVIRPLLNL------------LQQDCTALENFESLMALTNLASMNESVRQRI 619

Query: 388 EEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDETIAAGDGP 433
            + +G+ KIE     D+  +   A + L    + ED   +  G+  
Sbjct: 620 IKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNND 665

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  149 bits (377), Expect = 4e-39
 Identities = 57/455 (12%), Positives = 127/455 (27%), Gaps = 90/455 (19%)

Query: 7   SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTN 66
             D  ++  A       L+++     + +     +   ++     +     +       N
Sbjct: 390 GKDKDIRRWAADGLA-YLTLDAECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVN 447

Query: 67  IASGT--------------------------------SENTKVVIDHGAVPIFVKLLASP 94
           + +                                  ++   V+ + G       L  + 
Sbjct: 448 LCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTE 507

Query: 95  SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 154
           S + +E     L  V G     R  V+ +G +  LL    E  +    R+AT  L+    
Sbjct: 508 SHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGTEKGK-RHATQALARIGI 565

Query: 155 GK-PQPPFDQVRP--ALPALAQLVHSNDEEVLT-DACWALSYLSDGTNDKIQAVIEAGVC 210
              P+  F   R    +  L  L+  +   +   ++  AL+ L+       Q +I+    
Sbjct: 566 TINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGV 625

Query: 211 PRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKE 270
            ++   L      +                                            + 
Sbjct: 626 SKIEYYLMEDHLYL-------------------------------------------TRA 642

Query: 271 ACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIK 330
           A   + N+            +   V  L  L ++ + +     A A++  TS       K
Sbjct: 643 AAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEK 702

Query: 331 YLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEA 390
            L     +  L  L   P P +    +  + N++    A + +     +      ++E  
Sbjct: 703 ILAIASWLDILHTLIANPSPAVQHRGIVIILNMI---NAGEEIAKKLFE----TDIMELL 755

Query: 391 EGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDE 425
            GL ++ +       E+  + +   E Y + E  +
Sbjct: 756 SGLGQLPDDTRAKAREVATQCLAAAERYRIIERSD 790

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 88.0 bits (217), Expect = 1e-18
 Identities = 29/210 (13%), Positives = 63/210 (30%), Gaps = 3/210 (1%)

Query: 7   SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTN 66
              +    E+      L S+  +  + + I        +E+ + ED+  L   AA  L N
Sbjct: 592 DCTALENFESLMALTNLASM--NESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCN 649

Query: 67  IASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGAL 126
           +            ++  V     L     ++       AL  +   S +C + +L+  + 
Sbjct: 650 LVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASW 709

Query: 127 IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRP-ALPALAQLVHSNDEEVLTD 185
           + +L  L      ++       + N      +          +  L+ L    D+     
Sbjct: 710 LDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKA 769

Query: 186 ACWALSYLSDGTNDKIQAVIEAGVCPRLVE 215
              A   L+     +I    +    P +  
Sbjct: 770 REVATQCLAAAERYRIIERSDNAEIPDVFA 799

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  144 bits (364), Expect = 1e-40
 Identities = 38/214 (17%), Positives = 66/214 (30%), Gaps = 20/214 (9%)

Query: 41  VPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVR 99
           + R V  L  +   P     AA  + +     SE  K V     +   ++LL   ++DV+
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 100 EQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP 159
                AL N+  +    +  V     +  LL  L +   L   +  T  L N        
Sbjct: 70  RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129

Query: 160 PFDQVRPALPALAQLV----------------HSNDEEVLTDACWALSYLSDGTNDKIQA 203
               +  AL  L + +                   D ++  +    L  +S    D  +A
Sbjct: 130 N-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKA 188

Query: 204 VIEA-GVCPRLVELLGHPSPSVLIPALRTVGNIV 236
           +    G+   LV  +            +   N V
Sbjct: 189 MRRCDGLIDSLVHYVRGTIADYQPDD-KATENCV 221

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 95.4 bits (237), Expect = 9e-23
 Identities = 34/226 (15%), Positives = 77/226 (34%), Gaps = 30/226 (13%)

Query: 163 QVRPALPALAQLVHSND--EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP 220
            +   L     ++ ++      ++ A   + +     ++  + V +     +L++LL   
Sbjct: 5   DMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ 64

Query: 221 SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 280
           +  V       + N+V  D+     +     +P LL +L  +     KK+    + N+++
Sbjct: 65  NEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124

Query: 281 GNRDQIQAVIDAGLVGPLVNLL----------------QNAEFDIKKEAAWAISNATSGG 324
              D+++ ++    +  L   +                   +FDI       + N +S G
Sbjct: 125 N--DKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAG 182

Query: 325 THEQIKYLVRE--GCIKPLCDLF------VCPDPRIVTVCLEGLEN 362
                +  +R   G I  L            PD +    C+  L N
Sbjct: 183 --ADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHN 226

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 59.6 bits (144), Expect = 2e-10
 Identities = 31/198 (15%), Positives = 57/198 (28%), Gaps = 43/198 (21%)

Query: 7   SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTN 66
             +  +Q       R  L  E +    EV +   VPR ++ L +    + + +    L N
Sbjct: 63  VQNEDVQRAVCGALR-NLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWN 121

Query: 67  IASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGAL 126
           ++S   +  K ++   A+    + +  P       + W  G+                  
Sbjct: 122 LSSN--DKLKNLMITEALLTLTENIIIPF------SGWPEGD------------------ 155

Query: 127 IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRP---ALPALAQLVHSNDEEVL 183
                + N      +  N T  L N            +R     + +L   V     +  
Sbjct: 156 ---YPKANGLLDFDIFYNVTGCLRNMSSAGADGR-KAMRRCDGLIDSLVHYVRGTIADYQ 211

Query: 184 TDA-------C--WALSY 192
            D        C    LSY
Sbjct: 212 PDDKATENCVCILHNLSY 229

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 91.7 bits (227), Expect = 3e-21
 Identities = 41/197 (20%), Positives = 72/197 (36%), Gaps = 21/197 (10%)

Query: 40  VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVR 99
           ++ +    L + +   L  E A A   +A    E  K +I     P+         +  +
Sbjct: 70  MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMI-----PVLFANYRIGDEKTK 124

Query: 100 EQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP 159
               +AL  +A  +P     ++     + +L+  N   KL+ L        NF     + 
Sbjct: 125 INVSYALEEIAKANPMLMASIVRD--FMSMLSSKNREDKLTAL--------NFIEAMGEN 174

Query: 160 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH 219
            F  V P LP +  L+H  DE V   A  AL +L+   +   + VI      + +E L  
Sbjct: 175 SFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELND 228

Query: 220 PSPSVLIPALRTVGNIV 236
            S  V       +  ++
Sbjct: 229 TSSLVNKTVKEGISRLL 245

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 72.8 bits (178), Expect = 1e-14
 Identities = 33/236 (13%), Positives = 78/236 (33%), Gaps = 26/236 (11%)

Query: 83  AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSML 142
            +   ++LL      V + A+  +  +A          L +  L  L + L +   + + 
Sbjct: 33  VLKKLIELLDDDLWTVVKNAISIIMVIAKTRED-----LYEPMLKKLFSLLKKSEAIPLT 87

Query: 143 RNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQ 202
           +          + KP    + V+  +P L       DE+   +  +AL  ++      + 
Sbjct: 88  QEIAKAFGQMAKEKP----ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA 143

Query: 203 AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS 262
           +++        + +L   +    + AL  +  +      +         LP ++ LL   
Sbjct: 144 SIVRD-----FMSMLSSKNREDKLTALNFIEAMG-----ENSFKYVNPFLPRIINLLHDG 193

Query: 263 HKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAIS 318
             + ++  A   + ++   N    + VI        +  L +    + K     IS
Sbjct: 194 D-EIVRASAVEALVHLATLNDKLRKVVIK------RLEELNDTSSLVNKTVKEGIS 242

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 72.0 bits (177), Expect = 8e-15
 Identities = 46/249 (18%), Positives = 75/249 (30%), Gaps = 56/249 (22%)

Query: 80  DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKL 139
           D   V +++K L   S  VR  A +ALG +     R  +       LI  L   +   + 
Sbjct: 17  DPEKVEMYIKNLQDDSYYVRRAAAYALGKIG--DERAVE------PLIKALKDEDAWVR- 67

Query: 140 SMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND 199
              R A   L                 A+  L + +   D  V   A  AL  + D    
Sbjct: 68  ---RAAADALGQI----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIGD---- 110

Query: 200 KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLL 259
             +  +E      L++ L      V I A   +G I  GD+          A+  L+  L
Sbjct: 111 --ERAVEP-----LIKALKDEDWFVRIAAAFALGEI--GDE---------RAVEPLIKAL 152

Query: 260 THSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN 319
                  +++ A   +  I               +   +  L +      +K A   +  
Sbjct: 153 KDED-GWVRQSAADALGEIG-----------GERVRAAMEKLAETGTGFARKVAVNYLET 200

Query: 320 ATSGGTHEQ 328
             S   H  
Sbjct: 201 HKSFNHHHH 209

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 67.8 bits (166), Expect = 2e-13
 Identities = 46/245 (18%), Positives = 77/245 (31%), Gaps = 57/245 (23%)

Query: 41  VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 100
           V  +++ L  +    ++  AA+AL  I            D  AV   +K L      VR 
Sbjct: 21  VEMYIKNLQDDS-YYVRRAAAYALGKIG-----------DERAVEPLIKALKDEDAWVRR 68

Query: 101 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 160
            A  ALG +  +            A+ PL+  L +     + ++A   L     G  +  
Sbjct: 69  AAADALGQIGDER-----------AVEPLIKALKDEDG-WVRQSAAVALGQI--GDER-- 112

Query: 161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP 220
                 A+  L + +   D  V   A +AL  + D      +AV        L++ L   
Sbjct: 113 ------AVEPLIKALKDEDWFVRIAAAFALGEIGD-----ERAV------EPLIKALKDE 155

Query: 221 SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 280
              V   A   +G I  G +              +  L         +K A   +    +
Sbjct: 156 DGWVRQSAADALGEI--GGE---------RVRAAMEKLAETGT-GFARKVAVNYLETHKS 203

Query: 281 GNRDQ 285
            N   
Sbjct: 204 FNHHH 208

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 20/91 (21%)

Query: 40  VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVR 99
            V   ++ L +++   ++  AA+AL  I            D  AV   +K L      VR
Sbjct: 113 AVEPLIKAL-KDEDWFVRIAAAFALGEIG-----------DERAVEPLIKALKDEDGWVR 160

Query: 100 EQAVWALGNVAGDSPRCRDLVLSQGALIPLL 130
           + A  ALG + G+          + A+  L 
Sbjct: 161 QSAADALGEIGGER--------VRAAMEKLA 183

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 72.9 bits (179), Expect = 1e-14
 Identities = 37/311 (11%), Positives = 89/311 (28%), Gaps = 66/311 (21%)

Query: 9   DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIA 68
           ++  + +A+ ++  L +  +    +E+ +          L+ +     +  +A  L    
Sbjct: 3   NTYQKRKASKEY-GLYNQCKKLNDDELFR----------LLDDHNSLKRISSARVLQLRG 51

Query: 69  SGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIP 128
                         AV + ++  +  +   R+   + LG +     +C D V +      
Sbjct: 52  -----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQI-KICKKCEDNVFN-----I 94

Query: 129 LLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACW 188
           L           +   A  + +  C+  P          +             V     +
Sbjct: 95  LNNMALNDKSACVRATAIESTAQRCKKNPIYS----PKIVEQSQITAFDKSTNVRRATAF 150

Query: 189 ALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT 248
           A+S ++D               P L+ LL  P+  V   A   +      +         
Sbjct: 151 AISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS-------- 191

Query: 249 YGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFD 308
                  + +L   + + ++ EA   +S              D  ++  L + L+     
Sbjct: 192 -DIRDCFVEMLQDKN-EEVRIEAIIGLSYRK-----------DKRVLSVLCDELKKN--T 236

Query: 309 IKKEAAWAISN 319
           +  +   A   
Sbjct: 237 VYDDIIEAAGE 247

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 58.7 bits (142), Expect = 7e-10
 Identities = 29/267 (10%), Positives = 65/267 (24%), Gaps = 52/267 (19%)

Query: 97  DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 156
             + +A    G          D       L  LL   N   +     ++   L       
Sbjct: 5   YQKRKASKEYGLYNQCKKLNDD------ELFRLLDDHNSLKR----ISSARVLQLR---- 50

Query: 157 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 216
                   + A+    +     +        + L  +        +   +          
Sbjct: 51  ------GGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-----KKCEDNVFNILNNMA 99

Query: 217 LGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS 276
           L   S  V   A+ +       +   +        +             ++++   + IS
Sbjct: 100 LNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKST-NVRRATAFAIS 153

Query: 277 NITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREG 336
            I            D   +  L+NLL++   D++  AA+AI+                  
Sbjct: 154 VIN-----------DKATIPLLINLLKDPNGDVRNWAAFAININKYDN----------SD 192

Query: 337 CIKPLCDLFVCPDPRIVTVCLEGLENI 363
                 ++    +  +    + GL   
Sbjct: 193 IRDCFVEMLQDKNEEVRIEAIIGLSYR 219

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 33/189 (17%), Positives = 61/189 (32%), Gaps = 42/189 (22%)

Query: 23  LLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG 82
           + S  +      +    +V +       +    ++   A+A++ I            D  
Sbjct: 112 IESTAQRCKKNPIYSPKIVEQSQITA-FDKSTNVRRATAFAISVIN-----------DKA 159

Query: 83  AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSML 142
            +P+ + LL  P+ DVR  A +A+     D+   RD        + +L   NE  +    
Sbjct: 160 TIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRD------CFVEMLQDKNEEVR---- 209

Query: 143 RNATWTLSNFCRGKPQPPF------DQVRP-------------ALPALAQLV-HSNDEEV 182
             A   LS     +           + V                LP L  ++   +D E+
Sbjct: 210 IEAIIGLSYRKDKRVLSVLCDELKKNTVYDDIIEAAGELGDKTLLPVLDTMLYKFDDNEI 269

Query: 183 LTDACWALS 191
           +T A   L 
Sbjct: 270 ITSAIDKLK 278

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 74.9 bits (183), Expect = 2e-14
 Identities = 66/461 (14%), Positives = 145/461 (31%), Gaps = 144/461 (31%)

Query: 8   DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNI 67
           D   +  +A +   +L     S   EE++Q     +FVE ++R +Y        + ++ I
Sbjct: 52  DHIIMSKDAVSGTLRLFWTLLSKQ-EEMVQ-----KFVEEVLRINYK-------FLMSPI 98

Query: 68  AS---GTSENTKVVID-----HGAVPIFVKLLASPSDDV-REQAVWALGNVAGDSPRCRD 118
            +     S  T++ I+     +    +F K       +V R Q    L     +    ++
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY------NVSRLQPYLKLRQALLELRPAKN 152

Query: 119 LVLSQG-------ALIPLLAQLNERAKLSMLRNATW-TLSNFCRGKPQPPFDQVRPALPA 170
           +++  G        +   +   + + +  M     W  L N C        +     L  
Sbjct: 153 VLI-DGVLGSGKTWVALDVCL-SYKVQCKMDFKIFWLNLKN-C--------NSPETVLEM 201

Query: 171 LAQLVHSNDEE--VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPA 228
           L +L++  D      +D    +         +++         RL++   + +  +L+  
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR---------RLLKSKPYEN-CLLV-- 249

Query: 229 LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQA 288
           L  V N    + F   C I          LLT             T        R   + 
Sbjct: 250 LLNVQNAKAWNAFNLSCKI----------LLT-------------T--------RF--KQ 276

Query: 289 VIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQ-----IKYL-VREGCIKP-L 341
           V D       ++        +           +   T ++     +KYL  R   +   +
Sbjct: 277 VTDF------LSAATTTHISLDHH--------SMTLTPDEVKSLLLKYLDCRPQDLPREV 322

Query: 342 CDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEK-IENLQ 400
                  +PR +++          + E+ ++   AT D  ++    +    +E  +  L+
Sbjct: 323 LTT----NPRRLSI----------IAESIRDG-LATWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 401 SHDNNEIYE------KAVKI----LETYWLE---EDDETIA 428
             +  ++++       +  I    L   W +    D   + 
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 3e-07
 Identities = 68/495 (13%), Positives = 137/495 (27%), Gaps = 165/495 (33%)

Query: 1   MVAGV-W-------SDDSSLQLEAT--TQFRKLLS--IERSPPIEEVIQSGVVPRFVEFL 48
           M   + W       S ++ L++      Q     +   + S  I+  I S +       L
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS-IQAELRRLL 238

Query: 49  MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGN 108
             + Y          L            +V+                 +V+    W   N
Sbjct: 239 KSKPYEN-------CL------------LVLL----------------NVQNAKAWNAFN 263

Query: 109 VAGDSPRCRDLVLSQGA---------------LIPLLAQLNERAKLSMLRNATWTLSNFC 153
           +      C+ L+ ++                 L      L      S+L           
Sbjct: 264 L-----SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC----- 313

Query: 154 RGKPQ--PPFDQVRPALP-ALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV- 209
             +PQ  P   +V    P  L+ +  S  + + T   W          DK+  +IE+ + 
Sbjct: 314 --RPQDLPR--EVLTTNPRRLSIIAESIRDGLAT---W--DNWKHVNCDKLTTIIESSLN 364

Query: 210 --CP----RLVELLGHPSPSVLIPA--L---------RTVGNIVTGDDFQTQCII----- 247
              P    ++ + L    PS  IP   L           V  +V  +      ++     
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV--NKLHKYSLVEKQPK 422

Query: 248 --TYGALPYLLGLLTHS------HKKSI---KKEACWTISNITAGNRDQ---------IQ 287
             T       L L          H+  +        +   ++     DQ         ++
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482

Query: 288 AVIDAGLVGPLVNLLQNAEF-DIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDL-- 344
            +     +     +  +  F + K        NA+    +              L  L  
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT-------------LQQLKF 529

Query: 345 ---FVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS 401
              ++C +       +  + + L   + E+N+  +     +Y  L+  A        L  
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLP--KIEENLICS-----KYTDLLRIA--------LM- 573

Query: 402 HDNNEIYEKAVKILE 416
            ++  I+E+A K ++
Sbjct: 574 AEDEAIFEEAHKQVQ 588

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 70.0 bits (172), Expect = 4e-14
 Identities = 43/235 (18%), Positives = 72/235 (30%), Gaps = 56/235 (23%)

Query: 83  AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSML 142
            V +++K L   S  VR  A +ALG +     R  +       LI  L   +   +    
Sbjct: 15  KVEMYIKNLQDDSYYVRRAAAYALGKIG--DERAVE------PLIKALKDEDAWVR---- 62

Query: 143 RNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQ 202
           R A   L                 A+  L + +   D  V   A  AL  + D      +
Sbjct: 63  RAAADALGQI----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIGD------E 106

Query: 203 AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS 262
             +E      L++ L      V I A   +G I  GD+          A+  L+  L   
Sbjct: 107 RAVEP-----LIKALKDEDWFVRIAAAFALGEI--GDE---------RAVEPLIKALKDE 150

Query: 263 HKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAI 317
               +++ A   +  I               +   +  L +      +K A   +
Sbjct: 151 D-GWVRQSAADALGEIG-----------GERVRAAMEKLAETGTGFARKVAVNYL 193

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 63.5 bits (155), Expect = 6e-12
 Identities = 44/238 (18%), Positives = 75/238 (31%), Gaps = 57/238 (23%)

Query: 41  VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 100
           V  +++ L  +    ++  AA+AL  I            D  AV   +K L      VR 
Sbjct: 16  VEMYIKNLQDDS-YYVRRAAAYALGKIG-----------DERAVEPLIKALKDEDAWVRR 63

Query: 101 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 160
            A  ALG +  +            A+ PL+  L +     + ++A   L     G  +  
Sbjct: 64  AAADALGQIGDER-----------AVEPLIKALKDEDG-WVRQSAAVALGQI--GDER-- 107

Query: 161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP 220
                 A+  L + +   D  V   A +AL  + D      +  +E      L++ L   
Sbjct: 108 ------AVEPLIKALKDEDWFVRIAAAFALGEIGD------ERAVEP-----LIKALKDE 150

Query: 221 SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI 278
              V   A   +G I  G +              +  L         +K A   +   
Sbjct: 151 DGWVRQSAADALGEI--GGE---------RVRAAMEKLAETGT-GFARKVAVNYLETH 196

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 31/157 (19%), Positives = 47/157 (29%), Gaps = 36/157 (22%)

Query: 40  VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVR 99
            V   ++ L  ED   ++  AA AL  I            D  AV   +K L      VR
Sbjct: 77  AVEPLIKALKDED-GWVRQSAAVALGQIG-----------DERAVEPLIKALKDEDWFVR 124

Query: 100 EQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLR-NATWTLSNFCRGKPQ 158
             A +ALG +  +            A+ PL+  L +      +R +A   L         
Sbjct: 125 IAAAFALGEIGDER-----------AVEPLIKALKDED--GWVRQSAADALGEI------ 165

Query: 159 PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSD 195
                      A+ +L  +        A   L     
Sbjct: 166 ----GGERVRAAMEKLAETGTGFARKVAVNYLETHKS 198

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 69.1 bits (168), Expect = 1e-12
 Identities = 51/396 (12%), Positives = 120/396 (30%), Gaps = 31/396 (7%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS---GVVPRFVEFLMREDYPQLQ 57
           + + + S+D +    A    +K+          +V+      ++P+F++F      P+++
Sbjct: 133 LCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSS-PKIR 191

Query: 58  FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 117
             A   +       ++   + ID   +     L      +VR+    AL  +        
Sbjct: 192 SHAVACVNQFIISRTQALMLHIDS-FIENLFALAGDEEPEVRKNVCRALVMLLEVRMD-- 248

Query: 118 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF--DQVRPALPALAQLV 175
            L+     ++  + Q  +    ++   A                    +   +P L   +
Sbjct: 249 RLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGM 308

Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAG------------------VCPRLVELL 217
             +D +++                    + +                    + P L ELL
Sbjct: 309 KYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELL 368

Query: 218 GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN 277
            H    V    +  +G I  G        +    +P+L+  L+      ++   CWT+S 
Sbjct: 369 FHHEWVVKESGILVLGAIAEGCMQGMIPYLPE-LIPHLIQCLSDKKAL-VRSITCWTLSR 426

Query: 278 ITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGC 337
                  Q        L+  L+  + ++   +++ A  A +        E + YL     
Sbjct: 427 YAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYI 484

Query: 338 IKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNM 373
           +  L   F     + + +  + +  +        N 
Sbjct: 485 LDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNK 520

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 54.4 bits (130), Expect = 5e-08
 Identities = 38/236 (16%), Positives = 78/236 (33%), Gaps = 16/236 (6%)

Query: 7   SDDSSLQLEATTQFRKLLS---IERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWA 63
           S+D   +  +    +  +          + + I+S  +       + +  P ++      
Sbjct: 59  SEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLN-----NIGDSSPLIRATVGIL 113

Query: 64  LTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD---LV 120
           +T IAS              +P    LL S   +  E A  AL  +  DS    D   L 
Sbjct: 114 ITTIASKGELQNW----PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLD 169

Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 180
                +IP   Q  + +   +  +A   ++ F   + Q     +   +  L  L    + 
Sbjct: 170 RPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEP 229

Query: 181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 236
           EV  + C AL  L +   D++   +   +   +++       +V + A      + 
Sbjct: 230 EVRKNVCRALVMLLEVRMDRLLPHMHN-IVEYMLQRTQDQDENVALEACEFWLTLA 284

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 36/238 (15%), Positives = 66/238 (27%), Gaps = 22/238 (9%)

Query: 84  VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA-LIPLLAQLNERAKL--- 139
           +P+ V  +     D+        G   GD       +    A  + +LA +     L   
Sbjct: 301 IPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHI 360

Query: 140 -----SMLRNATW--------TLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDA 186
                 +L +  W         L     G  Q     +   +P L Q +      V +  
Sbjct: 361 LPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSIT 420

Query: 187 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCI 246
           CW LS  +     +        +   L++ +   +  V   A      +    +     +
Sbjct: 421 CWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLE---EEACTEL 477

Query: 247 ITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN 304
           + Y  L Y+L  L  +  K   K        I          +     +  L+  L  
Sbjct: 478 VPY--LAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQ 533

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 59.8 bits (144), Expect = 1e-09
 Identities = 46/312 (14%), Positives = 106/312 (33%), Gaps = 34/312 (10%)

Query: 34  EVIQSGVVPRFVEFL---MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL 90
           +   + ++   +EF+   +  D  + +  A  A  +I  G  +  +    H A+P  + L
Sbjct: 360 QNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNL 419

Query: 91  LASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLS--MLRNATWT 148
           +   S  V+E   W +G +A       + +  Q  L  ++       +    +  N +WT
Sbjct: 420 MNDQSLQVKETTAWCIGRIADS---VAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWT 476

Query: 149 LSNFCRGKPQPPFDQVRPALPA-LAQLVHS-----NDEEVLTDACWALSYLSDGTNDKIQ 202
           + N      +     +    PA +  L+ +     N+      A  AL+ + +   D + 
Sbjct: 477 IINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVA 536

Query: 203 AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGA----------- 251
               + +   +++ LG      +     T+ +  +  + Q+  +    A           
Sbjct: 537 ETSAS-ISTFVMDKLGQTMS--VDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEP 593

Query: 252 -----LPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAE 306
                +     LL       I+ +  + IS + A      +  ++      L+  L   +
Sbjct: 594 VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET-FSPYLLKALNQVD 652

Query: 307 FDIKKEAAWAIS 318
             +   A   I+
Sbjct: 653 SPVSITAVGFIA 664

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 56.7 bits (136), Expect = 9e-09
 Identities = 44/338 (13%), Positives = 93/338 (27%), Gaps = 28/338 (8%)

Query: 8   DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNI 67
              +++L A       L   ++    E  ++ ++    E    ED  ++Q  A   L  I
Sbjct: 193 TSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAED-IEVQAAAFGCLCKI 251

Query: 68  ASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALI 127
            S      K  ++     + +  + SP+D V    V     +  +       +       
Sbjct: 252 MSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSP 311

Query: 128 PLLAQLNERAKLSMLRNATWTLSN-------------------FCRGKPQPPFDQVRPAL 168
                    +   ++ N    L+                                + P L
Sbjct: 312 LQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVL 371

Query: 169 PALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPA 228
             + Q + +++      A  A   + DG +   +        P ++ L+   S  V    
Sbjct: 372 EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETT 431

Query: 229 LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH-SHKKSIKKEACWTISNITAGNRDQIQ 287
              +G I                   +   L        +     WTI N+     +   
Sbjct: 432 AWCIGRIAD--SVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATP 489

Query: 288 AVIDAGLVGPLVNLLQ-----NAEFDIKKEAAWAISNA 320
           + I       +  L+      + EF+ +  A  A++  
Sbjct: 490 SPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTM 527

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 57.4 bits (137), Expect = 7e-09
 Identities = 39/323 (12%), Positives = 107/323 (33%), Gaps = 21/323 (6%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLS----IERSPPIEEVIQSGVVPRFVEFLMREDYPQL 56
           +   + SD   L+  ++   + ++           +   +   +  R    + +++   +
Sbjct: 91  LCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSV 150

Query: 57  QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 116
           Q EA   + ++ S       V      +   +  L SP   VR++ + ALG++      C
Sbjct: 151 QLEALDIMADMLS-RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLV---MSC 206

Query: 117 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH 176
            ++V     +  LL++L++   +S  R     ++   R       + +   +P + +  +
Sbjct: 207 GNIVFVD-LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCN 265

Query: 177 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 236
            +D+E+      A          ++   +   +   L  L   P+            +  
Sbjct: 266 VDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPN---------YNYDDE 316

Query: 237 TGDDFQTQCIITYGALPYLLGLLTHSHKKS--IKKEACWTISNITAGNRDQIQAVIDAGL 294
             D+                   +     S  +++ A   +  + +   + +       +
Sbjct: 317 DEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKT-V 375

Query: 295 VGPLVNLLQNAEFDIKKEAAWAI 317
              L++  +  E ++K +   A 
Sbjct: 376 SPALISRFKEREENVKADVFHAY 398

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 33/247 (13%), Positives = 82/247 (33%), Gaps = 25/247 (10%)

Query: 33   EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA 92
             +   + V     +         ++  A  +L  +      + ++ +      + ++  +
Sbjct: 811  PKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKS----VILEAFS 866

Query: 93   SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLS-MLRNATWTLSN 151
            SPS++V+  A +ALG+++  +            L  +L ++  + K   +L ++   + +
Sbjct: 867  SPSEEVKSAASYALGSISVGNLPE--------YLPFVLQEITSQPKRQYLLLHSLKEIIS 918

Query: 152  FCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 211
                    P+  V      L +     +E         L         K+  +    + P
Sbjct: 919  SASVVGLKPY--VENIWALLLKHCECAEEGTRNVVAECLG--------KLTLIDPETLLP 968

Query: 212  RLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA 271
            RL   L   S       +  V   ++ D  Q    +    +   L  L      ++++ A
Sbjct: 969  RLKGYLISGSSYARSSVVTAVKFTIS-DHPQPIDPLLKNCIGDFLKTLEDPD-LNVRRVA 1026

Query: 272  CWTISNI 278
              T ++ 
Sbjct: 1027 LVTFNSA 1033

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 59/340 (17%), Positives = 113/340 (33%), Gaps = 26/340 (7%)

Query: 30  PPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK 89
           P +   +++ +   F   L  +D P ++  AA  L   A     +    +    +P+F  
Sbjct: 155 PRVSSAVKAELRQYFRN-LCSDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSN 210

Query: 90  LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTL 149
           L +   D VR  AV A  N+A   P+     L    L       + R +  +        
Sbjct: 211 LASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADK----F 266

Query: 150 SNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG-TNDKIQAVIEAG 208
           +     K   P       +PA   L+   + EV   A   +    +  + D  + VI + 
Sbjct: 267 TELQ--KAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQ 324

Query: 209 VCPRLVELLGHPSPSVLIPALRTVGNIVT--GDDFQTQCIITYGALPYLLGLLTHSHKKS 266
           + P + EL+   +  V       +  +    G D   + +     LP  L  L       
Sbjct: 325 ILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHL-----LPLFLAQLKDEC-PE 378

Query: 267 IKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTH 326
           ++      ISN+   N       +   L+  +V L ++A++ ++      +         
Sbjct: 379 VRLNI---ISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV 435

Query: 327 EQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV 366
           E     +   C+  L D        I       L+ +++ 
Sbjct: 436 EFFDEKLNSLCMAWLVD----HVYAIREAATSNLKKLVEK 471

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 55.6 bits (133), Expect = 2e-08
 Identities = 47/353 (13%), Positives = 105/353 (29%), Gaps = 39/353 (11%)

Query: 40  VVPRFVEFLMRE-DYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDV 98
           +   +++ L R  +   +Q  +A  L    S T      +       IF+  ++      
Sbjct: 293 ITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQL--SEIFINAISRRIVPK 350

Query: 99  REQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ 158
            E +V AL  ++  +     +  ++     LL  +  +     L      ++N      +
Sbjct: 351 VEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEE 410

Query: 159 PPFDQVRPALPALAQL-----VHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 213
                                      E             D      + ++   +   L
Sbjct: 411 XXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKE--------DILLFNEKYILRTELISFL 462

Query: 214 VELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH--SHKKSIKKEA 271
              + + SP+     +R + NI    +F  Q +   GA+  +L  L +     + I+   
Sbjct: 463 KREMHNLSPNCKQQVVRIIYNITRSKNFIPQ-LAQQGAVKIILEYLANKQDIGEPIRILG 521

Query: 272 CWTISN--ITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKK--------------EAAW 315
           C  ++   I        +       +  L  LL  +                    EA  
Sbjct: 522 CRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALL 581

Query: 316 AISNATSGGTHEQIK----YLVREGCIKPLCDLFVCPDPRIVTVCLEGLENIL 364
           A++N  S  T +  +     +  +     + +L +  +  +    LE + N++
Sbjct: 582 ALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMM 634

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 29/175 (16%), Positives = 58/175 (33%), Gaps = 8/175 (4%)

Query: 9   DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIA 68
           D+   L A T      + +     + ++ + V    +E LM ++   LQ      ++N+ 
Sbjct: 575 DNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMM 634

Query: 69  SGTSENTKVVIDHG------AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLS 122
           S          +           I VKLL     + +        N+A   P     +L+
Sbjct: 635 SHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLT 694

Query: 123 QGALIPLLAQL--NERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV 175
           +  LI    Q+  ++   + + +             P    ++V P L    +L 
Sbjct: 695 KKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLK 749

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 51.1 bits (123), Expect = 3e-08
 Identities = 25/143 (17%), Positives = 44/143 (30%), Gaps = 36/143 (25%)

Query: 83  AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSML 142
            +      +A  +  VR     AL  +  +            A  PLL  L+       +
Sbjct: 13  GLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNED--WRI 58

Query: 143 R-NATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKI 201
           R  A W + NF          Q   A+  L +L+  +   V + A  +L  +        
Sbjct: 59  RGAAAWIIGNF----------QDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG------ 102

Query: 202 QAVIEAGVCPRLVELLGHPSPSV 224
           + V  A     + +L    +   
Sbjct: 103 ERVRAA-----MEKLAETGTGFA 120

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 23/144 (15%), Positives = 47/144 (32%), Gaps = 36/144 (25%)

Query: 48  LMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALG 107
            M ++   ++ + + AL+ +               A    ++ L++    +R  A W +G
Sbjct: 20  HMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIG 67

Query: 108 NVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLR-NATWTLSNFCRGKPQPPFDQVRP 166
           N   D            A+ PL+  L + +    +R  A  +L     G  +        
Sbjct: 68  NF-QDER----------AVEPLIKLLEDDS--GFVRSGAARSLEQI--GGER-------- 104

Query: 167 ALPALAQLVHSNDEEVLTDACWAL 190
              A+ +L  +        A   L
Sbjct: 105 VRAAMEKLAETGTGFARKVAVNYL 128

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 26/153 (16%), Positives = 46/153 (30%), Gaps = 35/153 (22%)

Query: 165 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSV 224
              L      +   ++ V  D   ALS + D      +A         L+E L +    +
Sbjct: 11  SSGLVPRGSHMADENKWVRRDVSTALSRMGD------EAF------EPLLESLSNEDWRI 58

Query: 225 LIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD 284
              A   +GN    D+          A+  L+ LL       ++  A  ++  I  G   
Sbjct: 59  RGAAAWIIGNF--QDE---------RAVEPLIKLLEDDS-GFVRSGAARSLEQI--GGER 104

Query: 285 QIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAI 317
              A         +  L +      +K A   +
Sbjct: 105 VRAA---------MEKLAETGTGFARKVAVNYL 128

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 12/68 (17%)

Query: 40  VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVR 99
            V   ++ L  +D   ++  AA +L  I                     KL  + +   R
Sbjct: 74  AVEPLIKLL-EDDSGFVRSGAARSLEQIG-----------GERVRAAMEKLAETGTGFAR 121

Query: 100 EQAVWALG 107
           + AV  L 
Sbjct: 122 KVAVNYLE 129

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265

 Score = 53.3 bits (127), Expect = 4e-08
 Identities = 34/199 (17%), Positives = 65/199 (32%), Gaps = 13/199 (6%)

Query: 7   SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTN 66
            DD + +L A     ++L    S     V++   +  F+   + ++  ++  +A  AL  
Sbjct: 44  EDDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFIN-ALSQENEKVTIKALRALGY 101

Query: 67  IASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALG--NVAGDSPRCRDLVLSQG 124
           +       +K  +   A    V LL SP D +R + +  L       DS   R  +    
Sbjct: 102 LVKDVPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELV 159

Query: 125 ALIPLLAQ------LNERAKLSMLRNATWTLSNFCRGKPQPPFDQVR-PALPALAQLVHS 177
               L  +             S        + +      Q   + +   AL  L + +  
Sbjct: 160 VSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219

Query: 178 NDEEVLTDACWALSYLSDG 196
              E +      +S + DG
Sbjct: 220 PLLENVKIELLKISRIVDG 238

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 52.1 bits (124), Expect = 2e-07
 Identities = 31/167 (18%), Positives = 57/167 (34%), Gaps = 21/167 (12%)

Query: 41  VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 100
               +  ++  D   L++  A+ +    +GT  N+ V        +    ++  +DDVR 
Sbjct: 543 ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVK------RLLHVAVSDSNDDVRR 596

Query: 101 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 160
            AV ALG V                +  ++  L++     +     + L   C GK    
Sbjct: 597 AAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS 647

Query: 161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA 207
                 A+  L  L     + V   A  ALS +     +K+   +  
Sbjct: 648 ------AIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVAD 688

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 44/345 (12%), Positives = 101/345 (29%), Gaps = 34/345 (9%)

Query: 20  FRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVI 79
              L+ + ++   +  I    +      +  ++  +++  +     ++ S  +E    + 
Sbjct: 62  MEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTE--IFIK 119

Query: 80  DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP-RCRDLVLSQGALIPLLAQLNERAK 138
               V + + LL      VR   V  L ++      + + ++L     +  L  L   ++
Sbjct: 120 QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR 179

Query: 139 LSMLRNATWTLSNFCRGKPQPPFDQVRP-ALPALAQLVH----SNDEEVLTDACWALSYL 193
             +  +    L    R             A   L  ++     S+   V+ D    L  L
Sbjct: 180 EVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNL 239

Query: 194 SDGTNDKIQAVIEAGVCPRLVELLGHPSP---------SVLIPALRTVGNIVTGDDFQT- 243
               N       E     R+                  + L   L+ V  +V+ ++    
Sbjct: 240 LKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGA 299

Query: 244 -----QCIITYGALPYLLGLLTHSHK-KSIKKEACWTISNITAGNRDQIQ--AVIDAGLV 295
                + +   G L  L  +L  +     I  E   T+S +  G +      A ++A   
Sbjct: 300 TSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSN 359

Query: 296 GPLVNLLQN--------AEFDIKKEAAWAISNATSGGTHEQIKYL 332
            P   ++            F ++    +            Q + +
Sbjct: 360 PPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIV 404

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 55/327 (16%), Positives = 110/327 (33%), Gaps = 46/327 (14%)

Query: 32  IEEVIQSGVVPRFVEFL---MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV 88
           +    +  +VP  + F+   ++    + +  A  A   I  G   +    +   A+P  +
Sbjct: 355 LATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI 414

Query: 89  KLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER--AKLSMLRNAT 146
           +L+  PS  VR+ A W +G +        +  ++   L PLL  L E   A+  +  N  
Sbjct: 415 ELMKDPSVVVRDTAAWTVGRICEL---LPEAAINDVYLAPLLQCLIEGLSAEPRVASNVC 471

Query: 147 WTLSNFCRGKP-----------------QPPFDQVRPALPALAQLVHSNDEEVLTDACWA 189
           W  S+                          F+ +   L         +   + + A  +
Sbjct: 472 WAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYES 531

Query: 190 L-SYLSDGTNDKIQAVIE--AGVCPRLVELLGHPSP--------------SVLIPALRTV 232
           L   + +   D   AV +    +  RL ++L   S               S+L   L+ V
Sbjct: 532 LMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNV 591

Query: 233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDA 292
              V   D      +   +L  L    + +    ++++A   +S +      +    ++A
Sbjct: 592 LRKVQHQDALQISDVVMASL--LRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEA 649

Query: 293 GLVGPLVNLLQN-AEFDIKKEAAWAIS 318
                L   L+N AE+ +   A   + 
Sbjct: 650 -FKPFLGIGLKNYAEYQVCLAAVGLVG 675

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	454
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.93
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.92
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.91
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.91
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.91
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.88
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.85
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.83
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.82
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.81
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.81
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.79
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.77
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.74
3grl_A	651	General vesicular transport factor P115; vesicle t	99.71
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.71
3grl_A	651	General vesicular transport factor P115; vesicle t	99.69
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.67
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.66
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.65
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.64
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.63
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.63
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.61
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.61
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.59
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.58
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.57
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.47
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.47
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.46
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.45
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.39
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.36
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.24
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	99.13
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.13
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.11
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.07
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.06
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.96
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.87
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.86
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.84
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.84
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.83
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.81
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.78
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.78
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.6
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.55
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.54
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.51
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.48
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.46
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.45
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.41
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.38
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.18
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.16
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.15
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.15
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.13
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.05
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.04
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.9
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.77
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.67
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.66
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.65
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.62
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.62
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	97.62
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.61
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.53
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.43
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.4
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	97.32
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	97.14
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.1
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.96
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	96.82
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	96.56
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	96.54
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	96.51
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.48
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.46
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.4
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.37
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	96.0
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	95.71
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	95.48
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	95.36
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	95.2
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	95.05
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	95.04
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	94.95
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	94.37
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	94.27
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	93.66
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	93.23
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	92.6
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	92.58
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	92.49
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	92.04
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	92.02
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	91.89
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	91.86
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	91.76
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	91.58
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	91.47
1vdy_A	140	Hypothetical protein (RAFL09-17-B18); structural g	90.9
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	90.46
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	90.3
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	89.95
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	89.34
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	89.19
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	87.32
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	87.27
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	84.45
1elk_A	157	Target of MYB1; superhelix of helices, endocytosis	84.35
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	84.27
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	83.04
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	82.63
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	80.97

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=1.5e-59  Score=457.15  Aligned_cols=441  Identities=51%  Similarity=0.856  Sum_probs=384.2

Q ss_pred             CcccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897            1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID   80 (454)
Q Consensus         1 lv~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (454)
                      ||+.++|+|++.|+.|+..++++++.++.++++.+++.|++|.|+++|++.+++.+|..|+|+|+|++.++++.+..+++
T Consensus        62 ~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~  141 (510)
T 3ul1_B           62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD  141 (510)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            46789999999999999999999998878899999999999999999987766899999999999999989999999999


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhh----hhhHHHHHHHHHHhhcCCC
Q 012897           81 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA----KLSMLRNATWTLSNFCRGK  156 (454)
Q Consensus        81 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~----~~~~~~~a~~~L~~l~~~~  156 (454)
                      .|++|.|+.+|.++++.+++.|+|+|+||+.+.+..+..+.+.|+++.++.++....    ...+++.++|++.+++.+.
T Consensus       142 ~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~  221 (510)
T 3ul1_B          142 GGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK  221 (510)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999999999999999999999999999995322    2457889999999999986


Q ss_pred             -CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHh
Q 012897          157 -PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI  235 (454)
Q Consensus       157 -~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  235 (454)
                       +........+++|.|+.++.+++++++..++++|.+++.........+.+.|+++.|+.++.++++.++..++++|+++
T Consensus       222 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl  301 (510)
T 3ul1_B          222 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI  301 (510)
T ss_dssp             SSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHh
Confidence             5556666789999999999999999999999999999998888888888999999999999999999999999999999


Q ss_pred             hccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHH
Q 012897          236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAW  315 (454)
Q Consensus       236 ~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~  315 (454)
                      +.+++.....+++.|+++.|..+|.++ ++.+++.|+|+|+|++.+++.....+.+.|+++.|+.++.+++.+++..|+|
T Consensus       302 ~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~  380 (510)
T 3ul1_B          302 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAW  380 (510)
T ss_dssp             TTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             hcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHH
Confidence            998888888899999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHH
Q 012897          316 AISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEK  395 (454)
Q Consensus       316 aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~  395 (454)
                      +|.|++..++.+++.++.+.|+++.|+.++++++++++..++++|.++++.+++..       ..+.++.++.+.||+++
T Consensus       381 aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-------~~~~~~~~iee~ggl~~  453 (510)
T 3ul1_B          381 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEECGGLDK  453 (510)
T ss_dssp             HHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-------chHHHHHHHHHcCcHHH
Confidence            99999998888999999999999999999999999999999999999999877543       45568899999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcCcCCCcc---ccCCCCCCCCCCCCCCCCCCCCCCccC
Q 012897          396 IENLQSHDNNEIYEKAVKILETYWLEEDDET---IAAGDGPQPGFPYAGNEVQVPSGGFNF  453 (454)
Q Consensus       396 l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (454)
                      |+.|++|+|++|+++|..+|++||..|+|++   .|..+++  +|.|+..  +.|+|||||
T Consensus       454 ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~  510 (510)
T 3ul1_B          454 IEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSE--GFAFQVQ--DGAPGTFNF  510 (510)
T ss_dssp             HHHGGGCSSHHHHHHHHHHHHHHCC------------------------------------
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCCCcc--ccccCCC--CCCCCCCCC
Confidence            9999999999999999999999999776555   3665555  6777766  568899999

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=1.8e-58  Score=452.25  Aligned_cols=440  Identities=50%  Similarity=0.849  Sum_probs=383.1

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      ++.++|+|++.+..|+..++++++.+..++++.+++.|++|.|+++|...+++.++..|+|+|++++.++++....+++.
T Consensus        82 v~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~  161 (529)
T 3tpo_A           82 VKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG  161 (529)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence            56789999999999999999999988788899999999999999999877669999999999999999889999999999


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhh----hhhHHHHHHHHHHhhcCCC-
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA----KLSMLRNATWTLSNFCRGK-  156 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~----~~~~~~~a~~~L~~l~~~~-  156 (454)
                      |+++.|+.+|.++++.+++.|+|+|++|+.+++..+..+...|+++.++.++....    ...+.+.++|++.+++.+. 
T Consensus       162 Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~  241 (529)
T 3tpo_A          162 GAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN  241 (529)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCT
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999995332    3457889999999999987 


Q ss_pred             CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhh
Q 012897          157 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV  236 (454)
Q Consensus       157 ~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~  236 (454)
                      +........+++|.|+.++.+++++++..++|+|.+++.........+...|+++.|+.++.++++.++..++.+|++++
T Consensus       242 ~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~  321 (529)
T 3tpo_A          242 PAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV  321 (529)
T ss_dssp             TCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred             chhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHH
Confidence            55566677899999999999999999999999999999998888888889999999999999999999999999999999


Q ss_pred             ccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHH
Q 012897          237 TGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWA  316 (454)
Q Consensus       237 ~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a  316 (454)
                      .+++.....+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+++.....+++.|+++.|+.++.+++.+++..|+|+
T Consensus       322 ~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~a  400 (529)
T 3tpo_A          322 TGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWA  400 (529)
T ss_dssp             TSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred             ccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence            98888888899999999999999999 99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHH
Q 012897          317 ISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKI  396 (454)
Q Consensus       317 L~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l  396 (454)
                      |+|++..++.++..++.+.|+++.|+++|.++|++++..++++|.++++.++...       ..+.+...+.+.||+++|
T Consensus       401 L~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-------~~~~~~~~iee~ggl~~i  473 (529)
T 3tpo_A          401 ITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEECGGLDKI  473 (529)
T ss_dssp             HHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-------ChHHHHHHHHHCCcHHHH
Confidence            9999998888999999999999999999999999999999999999999877543       455688899999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHhcCcCCCcc---ccCCCCCCCCCCCCCCCCCCCCCCccC
Q 012897          397 ENLQSHDNNEIYEKAVKILETYWLEEDDET---IAAGDGPQPGFPYAGNEVQVPSGGFNF  453 (454)
Q Consensus       397 ~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (454)
                      +.|++|+|++|+++|..+|++||..|++++   .|..++.  +|.|+..  +.|+|||||
T Consensus       474 e~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~f~f  529 (529)
T 3tpo_A          474 EALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSE--GFAFQVQ--DGAPGTFNF  529 (529)
T ss_dssp             TGGGGCSSHHHHHHHHHHHHHHC-------------------------------------
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCCCCc--ccccCCC--CCCCCCCCC
Confidence            999999999999999999999998766554   4666666  6777766  567899999

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=6.6e-49  Score=385.97  Aligned_cols=424  Identities=86%  Similarity=1.322  Sum_probs=385.4

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      ++.|+++|++++..|+++|.++++....+....++..|++|.|+++|.+++++.++..|+++|++++.++++.+..+++.
T Consensus        80 v~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~  159 (528)
T 4b8j_A           80 IGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDH  159 (528)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhC
Confidence            56788999999999999999999887557889999999999999999988658999999999999999889999999999


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF  161 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  161 (454)
                      |+++.|+.+|.++++.++..|+|+|++++.+.+..+..+...|+++.|+.++..+.+..++..++|+|.+|+...+....
T Consensus       160 g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~  239 (528)
T 4b8j_A          160 GAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSF  239 (528)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCH
T ss_pred             CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcH
Confidence            99999999999999999999999999999888888999999999999999997777899999999999999998767777


Q ss_pred             hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCcc
Q 012897          162 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF  241 (454)
Q Consensus       162 ~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  241 (454)
                      ....+++|.|+.++.++++.++..++++|.+++...+.....+.+.++++.|+.+|.++++.++..|+++|++++.+++.
T Consensus       240 ~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~  319 (528)
T 4b8j_A          240 EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDA  319 (528)
T ss_dssp             HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHH
Confidence            77899999999999999999999999999999988888778889999999999999999999999999999999998887


Q ss_pred             chhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhc
Q 012897          242 QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT  321 (454)
Q Consensus       242 ~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  321 (454)
                      ....+++.++++.|+.+|.++.++.++..|+|+|+|++.+++.....+++.++++.|+.++.++++.++..|+++|++++
T Consensus       320 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~  399 (528)
T 4b8j_A          320 QTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNAT  399 (528)
T ss_dssp             HHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            88888999999999999987657899999999999999988888888999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhc
Q 012897          322 SGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS  401 (454)
Q Consensus       322 ~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~  401 (454)
                      ..++++...++.+.|+++.|+.++..++++++..++++|.++++.++...+....  ..+.+...+.+.|+++.|..+++
T Consensus       400 ~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~l~~L~~  477 (528)
T 4b8j_A          400 SGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAG--DVNVFSQMIDEAEGLEKIENLQS  477 (528)
T ss_dssp             HHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTC--SCCHHHHHHHHTTHHHHHHHGGG
T ss_pred             cCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccc--cccHHHHHHHHCCcHHHHHHHHc
Confidence            9877888999999999999999999999999999999999999988764432111  24458999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCcCCCccc
Q 012897          402 HDNNEIYEKAVKILETYWLEEDDETI  427 (454)
Q Consensus       402 ~~~~~v~~~a~~~l~~~~~~~~~~~~  427 (454)
                      +++++++++|..++++||..+++++.
T Consensus       478 ~~~~~v~~~a~~il~~~~~~e~~~~~  503 (528)
T 4b8j_A          478 HDNNEIYEKAVKILEAYWMDEEDDTM  503 (528)
T ss_dssp             CSSHHHHHHHHHHHHHHCC-------
T ss_pred             CCCHHHHHHHHHHHHHHCCCcccccc
Confidence            99999999999999999998877663

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=6.7e-47  Score=371.58  Aligned_cols=420  Identities=59%  Similarity=0.911  Sum_probs=380.3

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      ++.|+++|++++..|++.|+++++....+....+++.|+++.|+++|.+++++.++..|+++|++++..+++.+..+++.
T Consensus        93 v~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~  172 (530)
T 1wa5_B           93 TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA  172 (530)
T ss_dssp             HHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHC
Confidence            56788999999999999999998875456778899999999999999998339999999999999999888899999999


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC-CCCC
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPP  160 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~  160 (454)
                      |+++.|+.+|.++++.++..|+|+|++++.+.+..+..+...|+++.|+.++ .+.+..++..++|+|.+|+... +...
T Consensus       173 g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~  251 (530)
T 1wa5_B          173 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPD  251 (530)
T ss_dssp             TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence            9999999999999999999999999999998888999999999999999999 5578899999999999999886 6666


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897          161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD  240 (454)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  240 (454)
                      .....+++|.|+.++.++++.++..++++|.+++...+.....+++.++++.|+.++.++++.++..|+++|++++.+.+
T Consensus       252 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~  331 (530)
T 1wa5_B          252 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND  331 (530)
T ss_dssp             HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH
Confidence            77778999999999999999999999999999998887777888889999999999999999999999999999999887


Q ss_pred             cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHh
Q 012897          241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA  320 (454)
Q Consensus       241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  320 (454)
                      .....+++.++++.|+.+|.++ ++.++..|+|+|++++.++++..+.+++.++++.|+.++.++++.++..|+++|+++
T Consensus       332 ~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l  410 (530)
T 1wa5_B          332 LQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA  410 (530)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            7777888889999999999999 999999999999999998888888888999999999999999999999999999999


Q ss_pred             cCCCCH--HHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHH
Q 012897          321 TSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIEN  398 (454)
Q Consensus       321 ~~~~~~--~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~  398 (454)
                      +..+.+  +....+.+.|+++.|+.++.+++++++..++++|.+++..++...+....  ..+.+...+.+.|+++.|..
T Consensus       411 ~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~--~~~~~~~~l~~~g~~~~L~~  488 (530)
T 1wa5_B          411 SSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGL--NINENADFIEKAGGMEKIFN  488 (530)
T ss_dssp             HHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTC--SSCHHHHHHHHTTHHHHHHG
T ss_pred             HhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccc--cccHHHHHHHHcCcHHHHHH
Confidence            987655  77888889999999999999999999999999999999987754221000  23558899999999999999


Q ss_pred             HhcCCCHHHHHHHHHHHHHhcCcCCCc
Q 012897          399 LQSHDNNEIYEKAVKILETYWLEEDDE  425 (454)
Q Consensus       399 l~~~~~~~v~~~a~~~l~~~~~~~~~~  425 (454)
                      |+++++++++++|..+|++||..++++
T Consensus       489 L~~~~~~~v~~~a~~il~~~~~~~~~~  515 (530)
T 1wa5_B          489 CQQNENDKIYEKAYKIIETYFGEEEDA  515 (530)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHSSSCC--
T ss_pred             HHcCCCHHHHHHHHHHHHHHCCccccc
Confidence            999999999999999999999877654

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=3e-45  Score=353.33  Aligned_cols=421  Identities=61%  Similarity=0.968  Sum_probs=375.9

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHc-CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID   80 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (454)
                      ++.|+++|+.+|..|+..|+++++....+....+++. |+++.|+++|++++++.++..|+++|.+++..+++....+++
T Consensus        26 ~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  105 (450)
T 2jdq_A           26 IEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQ  105 (450)
T ss_dssp             HHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence            4567899999999999999999874335566777887 999999999999833999999999999999977888888889


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC-CCC
Q 012897           81 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQP  159 (454)
Q Consensus        81 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~  159 (454)
                      .|+++.|+.+|+++++.++..++++|++++.+.+..+..+.+.|+++.++.++..+.+..++..++++|++++... +..
T Consensus       106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~  185 (450)
T 2jdq_A          106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP  185 (450)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999999999999999888889999999999999999955578999999999999999876 555


Q ss_pred             ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccC
Q 012897          160 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD  239 (454)
Q Consensus       160 ~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  239 (454)
                      ......+++|.++.++.++++.++..++++|.+++...+.....+.+.++++.++.++.++++.++..|+++|++++.+.
T Consensus       186 ~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  265 (450)
T 2jdq_A          186 EFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGD  265 (450)
T ss_dssp             CGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             CHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCC
Confidence            55566899999999999999999999999999999887777778888899999999999999999999999999999987


Q ss_pred             ccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHH
Q 012897          240 DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN  319 (454)
Q Consensus       240 ~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~  319 (454)
                      +...+.+++.|+++.|+.++.++ ++.+|..|+|+|++++.+++...+.+++.++++.|+.++.+++++++..|+++|++
T Consensus       266 ~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~  344 (450)
T 2jdq_A          266 DIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITN  344 (450)
T ss_dssp             HHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            77777788889999999999998 99999999999999999888888888889999999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHH
Q 012897          320 ATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENL  399 (454)
Q Consensus       320 l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l  399 (454)
                      ++...+++....+.+.++++.|+.++++++++++..++++|.+++..++...+....  ..+.+...+.+.|+++.|..+
T Consensus       345 l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~--~~~~~~~~l~~~g~~~~l~~l  422 (450)
T 2jdq_A          345 ATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGT--GINPYCALIEEAYGLDKIEFL  422 (450)
T ss_dssp             HHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCS--CCCHHHHHHHHHHCHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhcccc--chhHHHHHHHHcCcHHHHHHH
Confidence            998766777888888999999999999999999999999999999877654321000  245688999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHHhcCcCCCc
Q 012897          400 QSHDNNEIYEKAVKILETYWLEEDDE  425 (454)
Q Consensus       400 ~~~~~~~v~~~a~~~l~~~~~~~~~~  425 (454)
                      ++++++++++.|..++++||+.|+++
T Consensus       423 ~~~~~~~v~~~a~~~l~~~~~~~~~~  448 (450)
T 2jdq_A          423 QSHENQEIYQKAFDLIEHYFGTEDED  448 (450)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHCCC---
T ss_pred             HcCCCHHHHHHHHHHHHHHCCccccc
Confidence            99999999999999999999877654

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=6.7e-39  Score=311.77  Aligned_cols=363  Identities=26%  Similarity=0.409  Sum_probs=318.9

Q ss_pred             Cccccc-CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 012897            1 MVAGVW-SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVI   79 (454)
Q Consensus         1 lv~~L~-s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   79 (454)
                      ||++|+ ++++.+|..|+|+|++++++. ++....+++.|++|.|+++|.+++ +++++.|+++|++++.++++.+..+.
T Consensus       105 LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~~r~~v~  182 (510)
T 3ul1_B          105 FVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVI  182 (510)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            356776 566999999999999999876 677888999999999999999999 99999999999999998899999999


Q ss_pred             hCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcC
Q 012897           80 DHGAVPIFVKLLASPS-----DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  154 (454)
Q Consensus        80 ~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  154 (454)
                      +.|+++.|+.++.+++     ..+++.++|++.+++.............++++.|++++ .+.+++++..++|+|++|+.
T Consensus       183 ~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~aL~~L~~  261 (510)
T 3ul1_B          183 KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTD  261 (510)
T ss_dssp             HTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTS
T ss_pred             HcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHHHHHHhh
Confidence            9999999999998754     45788999999999976654444444456789999999 77889999999999999998


Q ss_pred             CCCCC-ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHh
Q 012897          155 GKPQP-PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG  233 (454)
Q Consensus       155 ~~~~~-~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  233 (454)
                      ..... ......++++.|+.++.+.+..++..++++|++++..++.....+++.|+++.|+.++.++++.++..|+++|+
T Consensus       262 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~  341 (510)
T 3ul1_B          262 GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS  341 (510)
T ss_dssp             SCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHH
T ss_pred             chhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHH
Confidence            75322 33345789999999999999999999999999999998888888999999999999999999999999999999


Q ss_pred             HhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc-CCHHHHHHHHhCCChHHHHHHhhhcchhhHHH
Q 012897          234 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKE  312 (454)
Q Consensus       234 ~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~  312 (454)
                      |++.+++.....+.+.|+++.|+.++.+. +..+|..|+|+|+|++. ++.+.+..+++.|+++.|++++...+++++..
T Consensus       342 nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~  420 (510)
T 3ul1_B          342 NITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV  420 (510)
T ss_dssp             HHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred             HHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHH
Confidence            99998888888899999999999999999 99999999999999997 57888888999999999999999999999999


Q ss_pred             HHHHHHHhcCCC-----CHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 012897          313 AAWAISNATSGG-----THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG  367 (454)
Q Consensus       313 a~~aL~~l~~~~-----~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~  367 (454)
                      ++++|.|++..+     .......+.+.|+++.|..+..+++.++...|...|.+.+..+
T Consensus       421 ~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~  480 (510)
T 3ul1_B          421 ILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE  480 (510)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence            999999997521     2234455667899999999999999999999999999998543

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=1.8e-38  Score=310.53  Aligned_cols=362  Identities=26%  Similarity=0.408  Sum_probs=318.7

Q ss_pred             ccccc-CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897            2 VAGVW-SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID   80 (454)
Q Consensus         2 v~~L~-s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (454)
                      +++|+ ++++.+|..|+++|.+++++. +.....+++.|++|.|+.+|.+++ +++++.|+|+|++++..+++.+..+.+
T Consensus       125 v~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~~~r~~i~~  202 (529)
T 3tpo_A          125 VSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSAFRDLVIK  202 (529)
T ss_dssp             HHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            55675 566999999999999999886 566788999999999999999999 999999999999999988999999999


Q ss_pred             CCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCC
Q 012897           81 HGAVPIFVKLLASPS-----DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  155 (454)
Q Consensus        81 ~g~i~~L~~lL~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  155 (454)
                      .|+++.|+.+|..++     ..+.+.++|++.+++.............++++.|+.++ .+.+++++..++|+|.+++..
T Consensus       203 ~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~aL~~l~~~  281 (529)
T 3tpo_A          203 HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTDG  281 (529)
T ss_dssp             TTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHSS
T ss_pred             cCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHHHHHhhhh
Confidence            999999999998643     45788999999999977654444444556789999999 778899999999999999987


Q ss_pred             CCC-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhH
Q 012897          156 KPQ-PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN  234 (454)
Q Consensus       156 ~~~-~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  234 (454)
                      ... .......+++|.|+.++.++++.++..++++|++++..++.....+++.|+++.|+.++.++++.++..|+++|+|
T Consensus       282 ~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~n  361 (529)
T 3tpo_A          282 PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSN  361 (529)
T ss_dssp             CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            532 2334457899999999999999999999999999999888888889999999999999999999999999999999


Q ss_pred             hhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc-CCHHHHHHHHhCCChHHHHHHhhhcchhhHHHH
Q 012897          235 IVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEA  313 (454)
Q Consensus       235 l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  313 (454)
                      ++.+++.....+++.|+++.|+.++.++ +..++..|+|+|+|++. ++++.+..+++.|+++.|++++...+++++..+
T Consensus       362 l~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~  440 (529)
T 3tpo_A          362 ITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI  440 (529)
T ss_dssp             HHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred             HhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHH
Confidence            9998888888899999999999999999 99999999999999997 578888889999999999999999999999999


Q ss_pred             HHHHHHhcCC----CC-HHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 012897          314 AWAISNATSG----GT-HEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG  367 (454)
Q Consensus       314 ~~aL~~l~~~----~~-~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~  367 (454)
                      +++|.++...    +. ......+.+.|+++.|..+..+++.++...|...|.+.+..+
T Consensus       441 L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~  499 (529)
T 3tpo_A          441 LDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE  499 (529)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence            9999999742    12 334455667899999999999999999999999999987543

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=4e-38  Score=301.65  Aligned_cols=365  Identities=19%  Similarity=0.204  Sum_probs=308.9

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 012897           40 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL  119 (454)
Q Consensus        40 ~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~  119 (454)
                      .+|.|+.+|++++ ++++..|+++|.+++..++..+..+.+.|+++.|+.+|+++++.++..|+++|.||+.+++..+..
T Consensus         3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            4899999999998 899999999999999877788889999999999999999999999999999999999988889999


Q ss_pred             HHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhh--------cC--------CChhHH
Q 012897          120 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV--------HS--------NDEEVL  183 (454)
Q Consensus       120 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll--------~~--------~~~~v~  183 (454)
                      +.+.|+++.|+++|..+.++++++.++|+|++|+.++........ |++|.|+.++        .+        .++.+.
T Consensus        82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~  160 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence            999999999999995477899999999999999998443333444 9999999999        32        246677


Q ss_pred             HHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhcCC------CCCcchhhHHHHHhHhhcc------------------
Q 012897          184 TDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLGH------PSPSVLIPALRTVGNIVTG------------------  238 (454)
Q Consensus       184 ~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~------------------  238 (454)
                      ..++|+|.|++.. ++....+.+. |+++.|+.++.+      .+..+...++.+|.+++..                  
T Consensus       161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~  239 (457)
T 1xm9_A          161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence            8999999999987 6677778887 999999999975      4667888898888888631                  


Q ss_pred             --------------------------------CccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHH--
Q 012897          239 --------------------------------DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD--  284 (454)
Q Consensus       239 --------------------------------~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~--  284 (454)
                                                      .+...+.+++.++++.++.+|.+..++.+++.|+|+|+|++.++..  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~  319 (457)
T 1xm9_A          240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence                                            1223445667788999999998775789999999999999985432  


Q ss_pred             -HH-HHHH-hCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCH------HHHHH
Q 012897          285 -QI-QAVI-DAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDP------RIVTV  355 (454)
Q Consensus       285 -~~-~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~------~v~~~  355 (454)
                       .. +..+ +.|++|.|++++.+++.++++.|+|+|.|++..  .+ ...++..++++.|+++|...++      ++...
T Consensus       320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~~-~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~  396 (457)
T 1xm9_A          320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PL-LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GG-GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--HH-HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence             22 3444 689999999999999999999999999999884  23 3455667899999999998653      68889


Q ss_pred             HHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCC
Q 012897          356 CLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHD-NNEIYEKAVKILETYWLEED  423 (454)
Q Consensus       356 al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~-~~~v~~~a~~~l~~~~~~~~  423 (454)
                      ++++|.+++.....             ....+.+.|++++|.+|+.++ ++++++.|.++|+.||...+
T Consensus       397 ~l~~l~ni~~~~~~-------------~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~  452 (457)
T 1xm9_A          397 ACYTVRNLMASQPQ-------------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHHHHHHHTTCTH-------------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHHHHHHHHhcCHH-------------HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence            99999999864332             577888999999999999999 99999999999999997654

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=1.9e-38  Score=314.55  Aligned_cols=411  Identities=16%  Similarity=0.114  Sum_probs=333.2

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHH----cCCHHHHHHhhcCC--CChhHHHHHHHHHHHhcCCCchhh
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQ----SGVVPRFVEFLMRE--DYPQLQFEAAWALTNIASGTSENT   75 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~----~~~l~~L~~lL~~~--~~~~v~~~a~~~L~~l~~~~~~~~   75 (454)
                      +..++++++.+|..|+.+|.++.+....+.....+.    ..+++.++++|.++  + ++++..|+++|.+++. .++.+
T Consensus       336 ~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d-~~v~~~AveaLayLS~-~~~vk  413 (810)
T 3now_A          336 KRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKD-KDIRRWAADGLAYLTL-DAECK  413 (810)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCC-SSHHHHHHHHHHHHTT-SHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHHhC-CcHHH
Confidence            456778889999999999999986431111101111    23477899999988  6 8999999999999999 66666


Q ss_pred             HHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-----------------------------hhH---HHHHh
Q 012897           76 KVVI-DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP-----------------------------RCR---DLVLS  122 (454)
Q Consensus        76 ~~~~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-----------------------------~~~---~~~~~  122 (454)
                      ..++ +.|+++.|+.+|++++..++..++++|.||+.+.+                             ..+   +.+.+
T Consensus       414 ~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vve  493 (810)
T 3now_A          414 EKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLAN  493 (810)
T ss_dssp             HHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHH
Confidence            6666 57999999999999999999999999999997542                             122   67788


Q ss_pred             cCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHH
Q 012897          123 QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQ  202 (454)
Q Consensus       123 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  202 (454)
                      .|+++.|+.++ .++++.+++.|+|+|.+++.+.+........|++|.|+.++.++++..+..|+|+|.+++...+....
T Consensus       494 aGaVp~LV~LL-~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~  572 (810)
T 3now_A          494 EGITTALCALA-KTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS  572 (810)
T ss_dssp             TTHHHHHHHHH-TCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             CcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhh
Confidence            99999999999 67889999999999999997655555566689999999999999999999999999999865432211


Q ss_pred             H--HHHhCcHHHHHHhcCCCCC-cchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHh
Q 012897          203 A--VIEAGVCPRLVELLGHPSP-SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT  279 (454)
Q Consensus       203 ~--~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~  279 (454)
                      .  ....++++.|+.+|.++.. ..+..|+++|.|++..++.....+++.|+++.|..+|.++ ++.++..|+++|+|++
T Consensus       573 ~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~L~NLa  651 (810)
T 3now_A          573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQCLCNLV  651 (810)
T ss_dssp             TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHHHHHHT
T ss_pred             hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHh
Confidence            0  0113589999999986533 3346899999999998877788899999999999999998 9999999999999999


Q ss_pred             cCCHHHHHHHHh-CCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHH-cCCcHHHhhccCCCCHHHHHHHH
Q 012897          280 AGNRDQIQAVID-AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVR-EGCIKPLCDLFVCPDPRIVTVCL  357 (454)
Q Consensus       280 ~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~i~~L~~~l~~~~~~v~~~al  357 (454)
                      .+ ++....+++ .|.++.|+.++.+++..++..|+|+|.+++.. .+...+.+.+ .|+++.|+.++.+++++++..++
T Consensus       652 ~~-~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~-s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~  729 (810)
T 3now_A          652 MS-EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV-SVKCCEKILAIASWLDILHTLIANPSPAVQHRGI  729 (810)
T ss_dssp             TS-HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-CHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHH
T ss_pred             CC-hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-CHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHH
Confidence            76 455556664 68999999999999999999999999999885 4567788888 89999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCC---CHHHHHHHHHHHHHhcCcCCCccccCCC
Q 012897          358 EGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHD---NNEIYEKAVKILETYWLEEDDETIAAGD  431 (454)
Q Consensus       358 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~---~~~v~~~a~~~l~~~~~~~~~~~~~~~~  431 (454)
                      +++.|+......             ....+.+.|+++.|.++...+   +.++.+.|...|+.+.....-+.-++++
T Consensus       730 ~aL~NL~~~s~e-------------~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~~~~~~~~  793 (810)
T 3now_A          730 VIILNMINAGEE-------------IAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIERSDNAE  793 (810)
T ss_dssp             HHHHHHHTTCHH-------------HHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC-------
T ss_pred             HHHHHHHhCCHH-------------HHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCccCCCccc
Confidence            999999874321             467889999999999997544   7999999999999988755444333333

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=6.8e-38  Score=310.64  Aligned_cols=361  Identities=15%  Similarity=0.131  Sum_probs=311.1

Q ss_pred             cccccCC--CHHHHHHHHHHHHHHhccCCCCcHHHHH-HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch-----
Q 012897            2 VAGVWSD--DSSLQLEATTQFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE-----   73 (454)
Q Consensus         2 v~~L~s~--d~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~-----   73 (454)
                      +++|.++  |++++..|+++|..++..  .+....++ +.|++|.|+++|++++ +.++..|+++|.|++.+.++     
T Consensus       383 ~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~q~~~~  459 (810)
T 3now_A          383 RRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEKQEMLP  459 (810)
T ss_dssp             HHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCCCCCCC
T ss_pred             HHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchhhhhhH
Confidence            3456666  899999999999999876  45555555 5799999999999988 89999999999999985421     


Q ss_pred             ------------------------hh---HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCCh
Q 012897           74 ------------------------NT---KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGAL  126 (454)
Q Consensus        74 ------------------------~~---~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i  126 (454)
                                              .+   +.+++.|+++.|+.++.++++.+++.|+|+|+|++.+ +.++..+.+.|++
T Consensus       460 ~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gai  538 (810)
T 3now_A          460 EMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGV  538 (810)
T ss_dssp             SCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHH
T ss_pred             HHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCH
Confidence                                    12   6788999999999999999999999999999999965 5699999999999


Q ss_pred             HHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC-h--hhhhchHHHHHHhhcCCCh-hHHHHHHHHHHHhccCChHHHH
Q 012897          127 IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP-F--DQVRPALPALAQLVHSNDE-EVLTDACWALSYLSDGTNDKIQ  202 (454)
Q Consensus       127 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~-~--~~~~~~l~~l~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~  202 (454)
                      ++|+.++ .+.++..++.|+|+|.+++....... +  ....+++|.|+.+|.++.. ..+..++++|.|++..++....
T Consensus       539 p~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~  617 (810)
T 3now_A          539 KALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQ  617 (810)
T ss_dssp             HHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHH
Confidence            9999999 66677899999999999987532111 1  1235689999999986633 4467899999999998888888


Q ss_pred             HHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhc-cCChHHHHHhhcCCcchhHHHHHHHHHHHHhcC
Q 012897          203 AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT-YGALPYLLGLLTHSHKKSIKKEACWTISNITAG  281 (454)
Q Consensus       203 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~  281 (454)
                      .+++.|+++.|+.++.++++.++..|+++|+|++.+.+.. ..+.+ .+.++.|+.++.++ +..+|..|+|+|+|++.+
T Consensus       618 ~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~-~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~~  695 (810)
T 3now_A          618 RIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI-KMFEGNNDRVKFLALLCEDE-DEETATACAGALAIITSV  695 (810)
T ss_dssp             HHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHH-HHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHH-HHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCC
Confidence            8999999999999999999999999999999999876543 44454 68999999999998 999999999999999997


Q ss_pred             CHHHHHHHHh-CCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCC---CHHHHHHHH
Q 012897          282 NRDQIQAVID-AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP---DPRIVTVCL  357 (454)
Q Consensus       282 ~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~---~~~v~~~al  357 (454)
                      ++...+.+++ .|+++.|+.++.+++.+++..|+|+|.|++.. +.+...++.+.|+++.|..+++.+   ++++++.++
T Consensus       696 s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al  774 (810)
T 3now_A          696 SVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVAT  774 (810)
T ss_dssp             CHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHH
Confidence            8888889998 89999999999999999999999999999985 567889999999999999999765   689999999


Q ss_pred             HHHHHHHHhhhhh
Q 012897          358 EGLENILKVGEAE  370 (454)
Q Consensus       358 ~~L~~l~~~~~~~  370 (454)
                      .+|.++++.+.-.
T Consensus       775 ~aL~~ll~~g~~~  787 (810)
T 3now_A          775 QCLAAAERYRIIE  787 (810)
T ss_dssp             HHHHHHHHHHTC-
T ss_pred             HHHHHHHhCCCcc
Confidence            9999999876543

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=2e-36  Score=297.75  Aligned_cols=394  Identities=18%  Similarity=0.193  Sum_probs=334.0

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      ++.|+++++.++..|+++|.+++... ......+.+.|+++.|++++.+++ +.++..++.+|.+++..+++.+..+.+.
T Consensus       107 ~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~~~i~~~  184 (529)
T 1jdh_A          107 VKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLIILAS  184 (529)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHHHHHHHC
Confidence            56788999999999999999999885 456777788999999999999988 8999999999999999889999999999


Q ss_pred             CChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897           82 GAVPIFVKLLASP-SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP  160 (454)
Q Consensus        82 g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (454)
                      |+++.|+.++++. ....+..++.+|.+++. .+..+..+.+.|+++.++.++ .+.++.++..++|+|.+++...+.. 
T Consensus       185 ~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~-  261 (529)
T 1jdh_A          185 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAATKQ-  261 (529)
T ss_dssp             THHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHTTCTTC-
T ss_pred             CCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhcCChhh-
Confidence            9999999999874 46677788999999985 456788888999999999999 5568899999999999999876332 


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--CCCcchhhHHHHHhHhhcc
Q 012897          161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLIPALRTVGNIVTG  238 (454)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~  238 (454)
                       ....+++|.++.++.+++++++..++++|.+++...+.....+.+.++++.++.++.+  .++.++..++++|++++..
T Consensus       262 -~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~  340 (529)
T 1jdh_A          262 -EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR  340 (529)
T ss_dssp             -SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred             -HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence             2346899999999999999999999999999999887788889999999999999975  3478999999999999986


Q ss_pred             Ccc---chhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHH
Q 012897          239 DDF---QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAW  315 (454)
Q Consensus       239 ~~~---~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~  315 (454)
                      .+.   ....+.+.++++.|+.+|.++.++.++..++|+|+|++.+.. ....+.+.|+++.|+.++.++++++|..|+|
T Consensus       341 ~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~  419 (529)
T 1jdh_A          341 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDTQRRTSM  419 (529)
T ss_dssp             STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHHHHC-----
T ss_pred             CchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHHHHhHHHHHHHhc
Confidence            543   345677889999999999988346999999999999998644 3467889999999999999888888887777


Q ss_pred             HHHH----------------------hcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhc
Q 012897          316 AISN----------------------ATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNM  373 (454)
Q Consensus       316 aL~~----------------------l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~  373 (454)
                      ++.|                      ++.  .++....+.+.|+++.|+.++.+++++++..+.++|.++...       
T Consensus       420 ~l~n~~~~~~~~~~~i~~~~~~al~~L~~--~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~-------  490 (529)
T 1jdh_A          420 GGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-------  490 (529)
T ss_dssp             ------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-------
T ss_pred             ccCchhhhccccHHHHHHHHHHHHHHHhc--CchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC-------
Confidence            7666                      443  345556788899999999999999999999999999998732       


Q ss_pred             cCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 012897          374 GTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETY  418 (454)
Q Consensus       374 ~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~  418 (454)
                             +.+...+.+.|+++.|..++++++++++.+|.+++.++
T Consensus       491 -------~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          491 -------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             -------HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence                   12577889999999999999999999999999999875

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=3.3e-37  Score=290.01  Aligned_cols=359  Identities=19%  Similarity=0.195  Sum_probs=296.1

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCC-----------hhHHHHHHHHHHHhcCC
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDY-----------PQLQFEAAWALTNIASG   70 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-----------~~v~~~a~~~L~~l~~~   70 (454)
                      ++.+.+.|++   ...+.|..+...  .+....+++.|.+|.|+++|+..+.           ++++..|+|+|.|++.+
T Consensus        38 ~~~~~~~~~~---~~~~~ll~~~~~--~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~  112 (458)
T 3nmz_A           38 LSMLGTHDKD---DMSRTLLAMSSS--QDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHS  112 (458)
T ss_dssp             -------CCH---HHHHHHHHHHSS--TTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCHH---HHHHHHHHHHcC--CcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHcc
Confidence            4566777776   355666666555  4556889999999999999997542           79999999999999998


Q ss_pred             CchhhHHHHhCCCh----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHHhhCCChhhHHHHHhcCCh
Q 012897           71 TSENTKVVIDHGAV----------PIFVKLLASPS--DD-----VRE-------QAVWALGNVAGDSPRCRDLVLSQGAL  126 (454)
Q Consensus        71 ~~~~~~~~~~~g~i----------~~L~~lL~~~~--~~-----v~~-------~a~~~L~~l~~~~~~~~~~~~~~~~i  126 (454)
                      .++......+.+++          +.+++++.+.+  .+     +++       +|+|+|.|++.+ +++|+.+.+.|++
T Consensus       113 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l  191 (458)
T 3nmz_A          113 QPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGL  191 (458)
T ss_dssp             SCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHH
T ss_pred             CcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCH
Confidence            88888887777777          66777777642  22     544       999999999655 8899999999999


Q ss_pred             HHHHHHhch----------hhhhhHHHHHHHHHHhhcCCCCCCChhh--hhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 012897          127 IPLLAQLNE----------RAKLSMLRNATWTLSNFCRGKPQPPFDQ--VRPALPALAQLVHSNDEEVLTDACWALSYLS  194 (454)
Q Consensus       127 ~~l~~~l~~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~  194 (454)
                      +.|+.++..          ..++.+++.|+|+|.+|+.+.+......  ..|++|.|+.+|++++++++..++++|.|++
T Consensus       192 ~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs  271 (458)
T 3nmz_A          192 QAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLS  271 (458)
T ss_dssp             HHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence            999999942          2457899999999999998764333232  3567999999999999999999999999999


Q ss_pred             cC-ChHHHHHHHHhCcHHHHHHhc-CCCCCcchhhHHHHHhHhhccCccchhhhh-ccCChHHHHHhhcCCcch---hHH
Q 012897          195 DG-TNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTGDDFQTQCII-TYGALPYLLGLLTHSHKK---SIK  268 (454)
Q Consensus       195 ~~-~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~L~~~~~~---~v~  268 (454)
                      .. ++.....+.+.|+++.|+.+| .+.++.++..++.+|+|++.+++..+..+. ..|+++.|+.+|.++.+.   .++
T Consensus       272 ~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~  351 (458)
T 3nmz_A          272 WRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAII  351 (458)
T ss_dssp             SSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHH
T ss_pred             cCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHH
Confidence            85 556777888999999999975 556788999999999999985544555555 789999999999877222   499


Q ss_pred             HHHHHHHHHHhc---CCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhcc
Q 012897          269 KEACWTISNITA---GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLF  345 (454)
Q Consensus       269 ~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l  345 (454)
                      +.|+|+|.|++.   ++++.++.+.+.|+++.|+.++.+++..++++|+|+|.|++.. +++....+.+.|+++.|++++
T Consensus       352 ~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~I~~Lv~LL  430 (458)
T 3nmz_A          352 ESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLI  430 (458)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHTHHHHHHTTT
T ss_pred             HHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHH
Confidence            999999999997   7888898999999999999999999999999999999999864 678888999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhh
Q 012897          346 VCPDPRIVTVCLEGLENILKVG  367 (454)
Q Consensus       346 ~~~~~~v~~~al~~L~~l~~~~  367 (454)
                      .+++++++..++++|.+++...
T Consensus       431 ~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          431 HSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             TCSSHHHHHHHHHHHHHHHTCC
T ss_pred             hCCCHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999754

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.3e-35  Score=294.71  Aligned_cols=388  Identities=18%  Similarity=0.197  Sum_probs=331.5

Q ss_pred             CcccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897            1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID   80 (454)
Q Consensus         1 lv~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (454)
                      |++.|+++++.++..|+++|.+++... ......+.+.|+++.|+++|++++ +.++..++.+|.+++..+++.+..+.+
T Consensus       103 Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~~~i~~  180 (644)
T 2z6h_A          103 LVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLIILA  180 (644)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            356788999999999999999999885 566777888999999999999998 899999999999999878999999999


Q ss_pred             CCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCC
Q 012897           81 HGAVPIFVKLLASPS-DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP  159 (454)
Q Consensus        81 ~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  159 (454)
                      .|+++.|+.++++.+ ..++..++.+|.+++. .+..+..+.+.|+++.++.++ .+.+..+++.++++|.+++...+..
T Consensus       181 ~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~~~~~~  258 (644)
T 2z6h_A          181 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAATKQ  258 (644)
T ss_dssp             TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGGGCTTC
T ss_pred             cCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhhcchhh
Confidence            999999999998754 7788999999999985 556788999999999999999 5568899999999999999875332


Q ss_pred             ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC--CCcchhhHHHHHhHhhc
Q 012897          160 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP--SPSVLIPALRTVGNIVT  237 (454)
Q Consensus       160 ~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~  237 (454)
                        ....++++.|+.++.+.++.++..++++|.+++...+.....+.+.++++.|+.++.+.  .+.++..|+++|++++.
T Consensus       259 --~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~  336 (644)
T 2z6h_A          259 --EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  336 (644)
T ss_dssp             --CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             --hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence              33468999999999999999999999999999998877788899999999999999763  26899999999999997


Q ss_pred             cCcc---chhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcch-------
Q 012897          238 GDDF---QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEF-------  307 (454)
Q Consensus       238 ~~~~---~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~-------  307 (454)
                      ..+.   ....+.+.++++.|+.+|.++.++.+++.++|+|+|++.+... ...+++.++++.|++++...+.       
T Consensus       337 ~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~-~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~  415 (644)
T 2z6h_A          337 RHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDTQRRTS  415 (644)
T ss_dssp             SSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHHHTTC--
T ss_pred             CCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH-HHHHHHcCCHHHHHHHHhccchhhhhHhh
Confidence            5442   2334677899999999999884479999999999999986444 4778899999999999987554       


Q ss_pred             ---------------hhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhh
Q 012897          308 ---------------DIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKN  372 (454)
Q Consensus       308 ---------------~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~  372 (454)
                                     +++..++.+|.+++.  .......+.+.++++.|+.++.++++.++..++++|.++....     
T Consensus       416 ~al~n~~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~-----  488 (644)
T 2z6h_A          416 MGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK-----  488 (644)
T ss_dssp             --------CCSSCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSH-----
T ss_pred             hccccchhcccccHHHHHHHHHHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCH-----
Confidence                           455566666777765  3455667788999999999999999999999999999987431     


Q ss_pred             ccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHH
Q 012897          373 MGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA  411 (454)
Q Consensus       373 ~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a  411 (454)
                               ..+..+.+.|+++.|..++++++++++..|
T Consensus       489 ---------~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A  518 (644)
T 2z6h_A          489 ---------EAAEAIEAEGATAPLTELLHSRNEGVATYA  518 (644)
T ss_dssp             ---------HHHHHHHHTTCHHHHHHHTTCSCHHHHHHH
T ss_pred             ---------HHHHHHHHcCChhHHHHHHcCCCHHHHHHH
Confidence                     257788999999999999999999996643

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=2.6e-35  Score=282.97  Aligned_cols=369  Identities=18%  Similarity=0.211  Sum_probs=304.7

Q ss_pred             HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-Chh
Q 012897           37 QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD-SPR  115 (454)
Q Consensus        37 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~  115 (454)
                      ..+.++.|+++|.+++ ++++..|+++|.+++..+++.+..+++.|+|+.|+.+|.++++.+++.|+++|.||+.. ++.
T Consensus        46 ~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~  124 (584)
T 3l6x_A           46 RQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD  124 (584)
T ss_dssp             CCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred             ccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence            4578999999999998 99999999999999988899999999999999999999999999999999999999975 688


Q ss_pred             hHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhc------------------C
Q 012897          116 CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH------------------S  177 (454)
Q Consensus       116 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~------------------~  177 (454)
                      .+..+.+.|+++.|+++|....+.++++.++++|++|+..+. .+.....+++|.|+.++.                  .
T Consensus       125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~-~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDS-IKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGG-GHHHHHHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch-hhHHHHhccHHHHHHHHhccccccccccccccccccc
Confidence            999999999999999999655678899999999999998643 333344678999999761                  2


Q ss_pred             CChhHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhcCC------CCCcchhhHHHHHhHhhccCc----------
Q 012897          178 NDEEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLGH------PSPSVLIPALRTVGNIVTGDD----------  240 (454)
Q Consensus       178 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~----------  240 (454)
                      .++.++.++.++|.|++...+.....+.+. |+++.|+.++.+      .+....+.|+++|.||+....          
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ  283 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            367999999999999998877766777764 667799998864      456788999999999986521          


Q ss_pred             ---------------cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCH---HHHHHHH-hCCChHHHHHH
Q 012897          241 ---------------FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNR---DQIQAVI-DAGLVGPLVNL  301 (454)
Q Consensus       241 ---------------~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~---~~~~~l~-~~~~i~~L~~l  301 (454)
                                     ...+.+++.+.++.++.+|.+..++.+++.|+|+|.|++.+..   ...+..+ +.++++.|+++
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L  363 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL  363 (584)
T ss_dssp             ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred             hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence                           1122334445677889999654488999999999999997642   2223344 56889999999


Q ss_pred             hhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCC--------CHHHHHHHHHHHHHHHHhhhhhhhc
Q 012897          302 LQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP--------DPRIVTVCLEGLENILKVGEAEKNM  373 (454)
Q Consensus       302 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~--------~~~v~~~al~~L~~l~~~~~~~~~~  373 (454)
                      +.+++..++..|+++|.|++.....  . .++..++++.|+.+|.++        ..+++..++++|.|++.....    
T Consensus       364 L~s~~~~v~~~A~~aL~nLs~~~~~--~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~----  436 (584)
T 3l6x_A          364 LTNEHERVVKAASGALRNLAVDARN--K-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE----  436 (584)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHTTCSC--H-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH----
T ss_pred             HcCCCHHHHHHHHHHHHHHhCChhH--H-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH----
Confidence            9999999999999999999986532  2 334778999999999876        367888999999999865433    


Q ss_pred             cCCcccccHHHHHHHHhccHHHHHHHhcCC--CHHHHHHHHHHHHHhcCcCC
Q 012897          374 GTATADVNQYAQLVEEAEGLEKIENLQSHD--NNEIYEKAVKILETYWLEED  423 (454)
Q Consensus       374 ~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~--~~~v~~~a~~~l~~~~~~~~  423 (454)
                               ....+.+.|+++.|.+++.+.  .+.+++.|.+++..+|...+
T Consensus       437 ---------~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e  479 (584)
T 3l6x_A          437 ---------AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE  479 (584)
T ss_dssp             ---------HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred             ---------HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence                     356778899999999998875  89999999999999986443

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=6.3e-35  Score=286.59  Aligned_cols=365  Identities=25%  Similarity=0.364  Sum_probs=321.9

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc-hhhHHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhh
Q 012897           39 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS-ENTKVVIDHGAVPIFVKLLASPS-DDVREQAVWALGNVAGDSPRC  116 (454)
Q Consensus        39 ~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~  116 (454)
                      ..++.|++.|.+++ +.++..|+++|.+++.... .....++..|+++.|+.+|.+++ +.++..|+|+|++++...+..
T Consensus        74 ~~l~~lv~~L~s~~-~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~  152 (528)
T 4b8j_A           74 ESLPAMIGGVYSDD-NNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN  152 (528)
T ss_dssp             -CHHHHHHHHTSSC-HHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence            45899999999998 9999999999999976444 67788899999999999999876 999999999999999988889


Q ss_pred             HHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCC-CChhhhhchHHHHHHhh-cCCChhHHHHHHHHHHHhc
Q 012897          117 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ-PPFDQVRPALPALAQLV-HSNDEEVLTDACWALSYLS  194 (454)
Q Consensus       117 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~l~~ll-~~~~~~v~~~a~~~L~~l~  194 (454)
                      +..+...|+++.|+.++ .++++.++..++|+|++++.+.+. .......++++.|+.++ .+.++.++..++++|.+++
T Consensus       153 ~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~  231 (528)
T 4b8j_A          153 TKVVIDHGAVPIFVKLL-GSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC  231 (528)
T ss_dssp             HHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCcHHHHHHHh-cCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999 667899999999999999976532 33344568999999999 6778999999999999999


Q ss_pred             cCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHH
Q 012897          195 DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWT  274 (454)
Q Consensus       195 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~  274 (454)
                      ...+.. ......++++.|+.++.++++.++..++++|++++.+.+.....+++.|+++.|+.+|.++ ++.++..|+++
T Consensus       232 ~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~a~~~  309 (528)
T 4b8j_A          232 RGKPQP-SFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP-SPSVLIPALRT  309 (528)
T ss_dssp             CSSSCC-CHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred             cCCCCC-cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC-ChhHHHHHHHH
Confidence            875332 2234579999999999999999999999999999988777777888999999999999999 89999999999


Q ss_pred             HHHHhcCCHHHHHHHHhCCChHHHHHHhhhc-chhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHH
Q 012897          275 ISNITAGNRDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIV  353 (454)
Q Consensus       275 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~  353 (454)
                      |+|++.+++...+.+++.|+++.|+.++.++ ++.++..|+|+|+|++.. ..+....+...++++.|+.++.+++++++
T Consensus       310 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~  388 (528)
T 4b8j_A          310 VGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQIQAVINAGIIGPLVNLLQTAEFDIK  388 (528)
T ss_dssp             HHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence            9999998888888899999999999999998 999999999999999985 66777888899999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 012897          354 TVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL  420 (454)
Q Consensus       354 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  420 (454)
                      ..++++|.++...+...            ....+.+.|+++.|..++.+++++++..+...+..++.
T Consensus       389 ~~a~~aL~nl~~~~~~~------------~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~  443 (528)
T 4b8j_A          389 KEAAWAISNATSGGSHD------------QIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILK  443 (528)
T ss_dssp             HHHHHHHHHHHHHSCHH------------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHH------------HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            99999999998764322            45667789999999999999999999988888776653

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=1.6e-34  Score=283.66  Aligned_cols=371  Identities=24%  Similarity=0.341  Sum_probs=323.2

Q ss_pred             HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC-chhhHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCh
Q 012897           37 QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLASP-SDDVREQAVWALGNVAGDSP  114 (454)
Q Consensus        37 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~  114 (454)
                      ..+.++.|++.|++++ ++++..|+++|.++.... ......+++.|+++.|+.+|.++ ++.++..|+++|++++...+
T Consensus        85 ~~~~i~~lv~~L~s~~-~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~  163 (530)
T 1wa5_B           85 LQQELPQMTQQLNSDD-MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS  163 (530)
T ss_dssp             --CCHHHHHHHHSCSS-HHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred             hHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH
Confidence            4467999999999998 999999999999997632 44567788899999999999997 89999999999999998888


Q ss_pred             hhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCC-CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHh
Q 012897          115 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP-QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYL  193 (454)
Q Consensus       115 ~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l  193 (454)
                      ..+..+...|+++.|+.++ .++++.++..|+|+|++++...+ ........++++.|+.++.+.++.++..++++|.++
T Consensus       164 ~~~~~~~~~g~i~~Lv~lL-~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L  242 (530)
T 1wa5_B          164 AQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL  242 (530)
T ss_dssp             HHHHHHHHTTCHHHHHHHH-HHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence            8888898999999999999 67789999999999999998742 233334578999999999999999999999999999


Q ss_pred             ccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHH
Q 012897          194 SDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACW  273 (454)
Q Consensus       194 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~  273 (454)
                      +.............++++.|+.++.++++.++..++++|++++...+.....+++.++++.|+.+|.++ ++.++..|++
T Consensus       243 ~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~-~~~v~~~a~~  321 (530)
T 1wa5_B          243 CRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE-STLVQTPALR  321 (530)
T ss_dssp             HCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHH
T ss_pred             hCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC-ChhhHHHHHH
Confidence            976522223455579999999999999999999999999999987776777788889999999999988 9999999999


Q ss_pred             HHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHH
Q 012897          274 TISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIV  353 (454)
Q Consensus       274 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~  353 (454)
                      +|++++.+++...+.+++.|+++.|+.++.++++.++..|+|+|++++.. .++....+.+.++++.|+.++.+++++++
T Consensus       322 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~v~  400 (530)
T 1wa5_B          322 AVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG-NTEQIQAVIDANLIPPLVKLLEVAEYKTK  400 (530)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence            99999998888888888899999999999999999999999999999975 55677778889999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Q 012897          354 TVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLE  421 (454)
Q Consensus       354 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  421 (454)
                      ..++++|.++...+...          ......+.+.|+++.|..++.+++++++..|.+.+..++..
T Consensus       401 ~~a~~aL~~l~~~~~~~----------~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~  458 (530)
T 1wa5_B          401 KEACWAISNASSGGLQR----------PDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM  458 (530)
T ss_dssp             HHHHHHHHHHHHHTTTC----------THHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCc----------HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence            99999999999764320          01355666799999999999999999999999998887753

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=4.2e-36  Score=289.40  Aligned_cols=361  Identities=25%  Similarity=0.335  Sum_probs=315.0

Q ss_pred             cccccCC-CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897            2 VAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID   80 (454)
Q Consensus         2 v~~L~s~-d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (454)
                      ++.|+++ ++.+|..|+++|.+++... .+....+++.|+++.|+++|++++ +.++..|+++|++++...++.+..+.+
T Consensus        70 ~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~~~~~~~  147 (450)
T 2jdq_A           70 VEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMCRDYVLD  147 (450)
T ss_dssp             HHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            4567777 8999999999999999864 455667788999999999999998 999999999999999988889999999


Q ss_pred             CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCC-
Q 012897           81 HGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP-  157 (454)
Q Consensus        81 ~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-  157 (454)
                      .|+++.|+.++.+ +++.++..++++|++++... +..+... ..++++.++.++ .+.++.++..++|+|.+++...+ 
T Consensus       148 ~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l~~~~~~  225 (450)
T 2jdq_A          148 CNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLL-FVSDTDVLADACWALSYLSDGPND  225 (450)
T ss_dssp             TTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSSHH
T ss_pred             CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHCCCcH
Confidence            9999999999996 78999999999999999665 3322222 267899999999 66788999999999999998642 


Q ss_pred             CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhc
Q 012897          158 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT  237 (454)
Q Consensus       158 ~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  237 (454)
                      ........++++.++.++.++++.++..++++|++++...+...+.+.+.++++.++.++.++++.++..|+++|++++.
T Consensus       226 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~  305 (450)
T 2jdq_A          226 KIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITA  305 (450)
T ss_dssp             HHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            22233346899999999999999999999999999999888777778888999999999999999999999999999998


Q ss_pred             cCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcC-CHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHH
Q 012897          238 GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWA  316 (454)
Q Consensus       238 ~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a  316 (454)
                      +++...+.+++.++++.++.+|.++ ++.+|..|+|+|+|++.+ +++..+.+++.++++.|+.++..++++++..++++
T Consensus       306 ~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a  384 (450)
T 2jdq_A          306 GNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNG  384 (450)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHH
Confidence            8777777788889999999999988 999999999999999974 67888888889999999999999999999999999


Q ss_pred             HHHhcCCCCH----------HHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 012897          317 ISNATSGGTH----------EQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG  367 (454)
Q Consensus       317 L~~l~~~~~~----------~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~  367 (454)
                      |.+++.....          .....+.+.|+++.|..+..+++++++..++.+|.+++...
T Consensus       385 L~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~  445 (450)
T 2jdq_A          385 LENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTE  445 (450)
T ss_dssp             HHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence            9999874322          23456777899999999999899999999999999998543

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=1.3e-36  Score=291.13  Aligned_cols=358  Identities=16%  Similarity=0.186  Sum_probs=295.9

Q ss_pred             CcccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897            1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID   80 (454)
Q Consensus         1 lv~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (454)
                      +++.|+++|+++|..|+++|.+++... ++....+.+.|++|.|+++|++++ +.++..|+++|.+++..+++++..+++
T Consensus         7 lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~~i~~   84 (457)
T 1xm9_A            7 AVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKLETRR   84 (457)
T ss_dssp             HHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            367789999999999999999998664 444668899999999999999988 999999999999999977999999999


Q ss_pred             CCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhch--------h-------hhhhHHHH
Q 012897           81 HGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--------R-------AKLSMLRN  144 (454)
Q Consensus        81 ~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--------~-------~~~~~~~~  144 (454)
                      .|+++.|+.+|. ++++++++.++|+|+||+.+ +..+..+.+ |+++.|++++..        .       .+.++++.
T Consensus        85 ~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~  162 (457)
T 1xm9_A           85 QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN  162 (457)
T ss_dssp             TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred             cCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHH
Confidence            999999999999 78999999999999999987 668888888 999999999931        1       24677889


Q ss_pred             HHHHHHhhcCCCCCCChhhhh-chHHHHHHhhcC------CChhHHHHHHHHHHHhccCC--------------------
Q 012897          145 ATWTLSNFCRGKPQPPFDQVR-PALPALAQLVHS------NDEEVLTDACWALSYLSDGT--------------------  197 (454)
Q Consensus       145 a~~~L~~l~~~~~~~~~~~~~-~~l~~l~~ll~~------~~~~v~~~a~~~L~~l~~~~--------------------  197 (454)
                      ++|+|++|+.++......... |+++.|+.++++      .+..++..++++|.+++...                    
T Consensus       163 a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~  242 (457)
T 1xm9_A          163 ATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT  242 (457)
T ss_dssp             HHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----
T ss_pred             HHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccc
Confidence            999999999873222222333 899999999985      46678889999999986321                    


Q ss_pred             ------------------------------hHHHHHHHHhCcHHHHHHhcCC-CCCcchhhHHHHHhHhhccCccch---
Q 012897          198 ------------------------------NDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGDDFQT---  243 (454)
Q Consensus       198 ------------------------------~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~---  243 (454)
                                                    +...+.+++.++++.++.+|.+ +++.+++.|+++|+|++.++....   
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~  322 (457)
T 1xm9_A          243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGM  322 (457)
T ss_dssp             -----------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHH
T ss_pred             cccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHH
Confidence                                          0111223445677888888865 467899999999999998765432   


Q ss_pred             -hhh-hccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcc------hhhHHHHHH
Q 012897          244 -QCI-ITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAE------FDIKKEAAW  315 (454)
Q Consensus       244 -~~~-~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~------~~v~~~a~~  315 (454)
                       +.. .+.++++.|+.+|.++ +..+++.|+|+|+|++.+ ++ .+.++..++++.|++++...+      .++...+++
T Consensus       323 ~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~-~~-~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~  399 (457)
T 1xm9_A          323 SQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH-PL-LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACY  399 (457)
T ss_dssp             HHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS-GG-GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHH
T ss_pred             HHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcC-HH-HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHH
Confidence             223 3679999999999999 999999999999999975 33 345566789999999999864      368889999


Q ss_pred             HHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCC-CHHHHHHHHHHHHHHHHh
Q 012897          316 AISNATSGGTHEQIKYLVREGCIKPLCDLFVCP-DPRIVTVCLEGLENILKV  366 (454)
Q Consensus       316 aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~-~~~v~~~al~~L~~l~~~  366 (454)
                      +|.++.... ++....+.+.|+++.|+.++.++ +++++..|.+.|.+++..
T Consensus       400 ~l~ni~~~~-~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~  450 (457)
T 1xm9_A          400 TVRNLMASQ-PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS  450 (457)
T ss_dssp             HHHHHHTTC-THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHHhcC-HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcc
Confidence            999998764 46778888889999999999999 999999999999999854

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=5.6e-34  Score=289.91  Aligned_cols=396  Identities=18%  Similarity=0.189  Sum_probs=335.3

Q ss_pred             CcccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897            1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID   80 (454)
Q Consensus         1 lv~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (454)
                      |++.|+++++.++..|+++|.+++... ......+.+.|+++.|+++|.+++ ..++..++.+|.+++..+++.+..+.+
T Consensus       239 Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~~~i~~  316 (780)
T 2z6g_A          239 LVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLIILA  316 (780)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            356788999999999999999999885 456666778999999999999988 899999999999999878899999999


Q ss_pred             CCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCC
Q 012897           81 HGAVPIFVKLLASPS-DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP  159 (454)
Q Consensus        81 ~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  159 (454)
                      .|+++.|+.++++.+ ...+..++.+|.+++.. +..+..+...|+++.|+.++ .+.+..++..++++|.+++..... 
T Consensus       317 ~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~~~~~-  393 (780)
T 2z6g_A          317 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAATK-  393 (780)
T ss_dssp             TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHTTCTT-
T ss_pred             cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhccchh-
Confidence            999999999999755 55677889999999864 55788888999999999999 566788999999999999987633 


Q ss_pred             ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCC-cchhhHHHHHhHhhc
Q 012897          160 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSP-SVLIPALRTVGNIVT  237 (454)
Q Consensus       160 ~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~-~v~~~a~~~L~~l~~  237 (454)
                       .....++++.|+.++.+.++.++..++++|.+++...+.....+.+.++++.|+.++.+ ++. .++..|+++|++++.
T Consensus       394 -~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~  472 (780)
T 2z6g_A          394 -QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  472 (780)
T ss_dssp             -CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred             -hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence             22346899999999999999999999999999999888788888899999999999976 333 899999999999987


Q ss_pred             cCccc---hhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcch-------
Q 012897          238 GDDFQ---TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEF-------  307 (454)
Q Consensus       238 ~~~~~---~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~-------  307 (454)
                      ..+..   ...+...++++.|+.+|.++..+.++..|+|+|+|++.+ +.....+.+.|+++.|++++.++++       
T Consensus       473 ~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa  551 (780)
T 2z6g_A          473 RHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDTQRRTS  551 (780)
T ss_dssp             SSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS-HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHh
Confidence            55432   346777899999999999883459999999999999975 4445678889999999999987543       


Q ss_pred             ---------------hhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhh
Q 012897          308 ---------------DIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKN  372 (454)
Q Consensus       308 ---------------~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~  372 (454)
                                     +++..++.+|.+++.  ++.....+.+.++++.|+.++.++++.++..++.+|.++...      
T Consensus       552 ~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~------  623 (780)
T 2z6g_A          552 MGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD------  623 (780)
T ss_dssp             ------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS------
T ss_pred             hccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC------
Confidence                           456677778888875  456667778899999999999999999999999999999732      


Q ss_pred             ccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 012897          373 MGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW  419 (454)
Q Consensus       373 ~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~  419 (454)
                              ...+..+.+.|+++.|.+++++++++++..|.++|.++.
T Consensus       624 --------~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~  662 (780)
T 2z6g_A          624 --------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS  662 (780)
T ss_dssp             --------HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence                    125778999999999999999999999877655554433

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=1.3e-35  Score=285.10  Aligned_cols=360  Identities=19%  Similarity=0.194  Sum_probs=296.1

Q ss_pred             CcccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCC-CchhhHHHH
Q 012897            1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG-TSENTKVVI   79 (454)
Q Consensus         1 lv~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~   79 (454)
                      +|++|+++|+++|..|+++|.+++... .+....+++.|++|.|+++|.+++ ++++..|+++|.+++.+ +++++..++
T Consensus        53 LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~nk~~I~  130 (584)
T 3l6x_A           53 VIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDNKIAIK  130 (584)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHHHHHHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence            467899999999999999999999765 677888999999999999999999 99999999999999985 689999999


Q ss_pred             hCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc-----------------hhhhhhH
Q 012897           80 DHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN-----------------ERAKLSM  141 (454)
Q Consensus        80 ~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-----------------~~~~~~~  141 (454)
                      +.|+|+.|+.+|.+ .+.++++.++++|++|+. .+..+..+.. ++++.|++++.                 ...++++
T Consensus       131 ~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V  208 (584)
T 3l6x_A          131 NCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESV  208 (584)
T ss_dssp             HTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHH
T ss_pred             HcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHH
Confidence            99999999999997 678999999999999987 4567777775 56999999872                 1125789


Q ss_pred             HHHHHHHHHhhcCCCCC-CChhh-hhchHHHHHHhhcC------CChhHHHHHHHHHHHhccCChHH-------------
Q 012897          142 LRNATWTLSNFCRGKPQ-PPFDQ-VRPALPALAQLVHS------NDEEVLTDACWALSYLSDGTNDK-------------  200 (454)
Q Consensus       142 ~~~a~~~L~~l~~~~~~-~~~~~-~~~~l~~l~~ll~~------~~~~v~~~a~~~L~~l~~~~~~~-------------  200 (454)
                      +..++++|.||+...+. ..... ..|+++.|+.++++      .+...+++|+++|.|++......             
T Consensus       209 ~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~  288 (584)
T 3l6x_A          209 LTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPN  288 (584)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-------
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhccc
Confidence            99999999999987633 23232 35778899999874      46789999999999998652110             


Q ss_pred             ------------HHHHHHhCcHHHHHHhcC-CCCCcchhhHHHHHhHhhccCccc----hhhhhccCChHHHHHhhcCCc
Q 012897          201 ------------IQAVIEAGVCPRLVELLG-HPSPSVLIPALRTVGNIVTGDDFQ----TQCIITYGALPYLLGLLTHSH  263 (454)
Q Consensus       201 ------------~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~----~~~~~~~~~l~~L~~~L~~~~  263 (454)
                                  ...+...++++.++.+|. ..++.+++.|+++|.|++.+....    ...+.+.++++.|+.+|.++ 
T Consensus       289 ~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~-  367 (584)
T 3l6x_A          289 VANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE-  367 (584)
T ss_dssp             -------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCS-
T ss_pred             ccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCC-
Confidence                        111223345677888885 467899999999999999865322    22344578899999999999 


Q ss_pred             chhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc--------chhhHHHHHHHHHHhcCCCCHHHHHHHHHc
Q 012897          264 KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--------EFDIKKEAAWAISNATSGGTHEQIKYLVRE  335 (454)
Q Consensus       264 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~  335 (454)
                      +..+++.|+|+|+|++.+.. . +..+..++++.|+++|.++        +.+++..|+++|.|++.. ++++.+.+.+.
T Consensus       368 ~~~v~~~A~~aL~nLs~~~~-~-~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~~I~~~  444 (584)
T 3l6x_A          368 HERVVKAASGALRNLAVDAR-N-KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAKKLRET  444 (584)
T ss_dssp             CHHHHHHHHHHHHHHHTTCS-C-HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHhCChh-H-HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHHHHHHC
Confidence            89999999999999998643 2 2445778999999999876        357889999999999875 67888899999


Q ss_pred             CCcHHHhhccCCC--CHHHHHHHHHHHHHHHHhhh
Q 012897          336 GCIKPLCDLFVCP--DPRIVTVCLEGLENILKVGE  368 (454)
Q Consensus       336 ~~i~~L~~~l~~~--~~~v~~~al~~L~~l~~~~~  368 (454)
                      |+++.|+.++.++  .+.+++.|.++|.++....+
T Consensus       445 g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e  479 (584)
T 3l6x_A          445 QGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE  479 (584)
T ss_dssp             THHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred             CChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence            9999999999986  78999999999999986544

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=2.2e-34  Score=283.25  Aligned_cols=397  Identities=16%  Similarity=0.160  Sum_probs=330.9

Q ss_pred             cccccC-CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897            2 VAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID   80 (454)
Q Consensus         2 v~~L~s-~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (454)
                      ++.|++ +|++++..|+.+|.+++..  .+....+.+.|+++.|+++|++++ +.++..|+++|.+++..++..+..+.+
T Consensus        65 v~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~  141 (529)
T 1jdh_A           65 VRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAKMAVRL  141 (529)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            345654 5899999999999998766  457888899999999999999999 999999999999999966778888889


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897           81 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP  160 (454)
Q Consensus        81 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (454)
                      .|+++.|+.++.++++.++..++.+|.+++..++..+..+.+.|+++.++.++........+..++.+|.+++..+....
T Consensus       142 ~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~  221 (529)
T 1jdh_A          142 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP  221 (529)
T ss_dssp             HTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHH
T ss_pred             cCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHH
Confidence            99999999999999999999999999999988888999999999999999999666667788889999999997654444


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897          161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD  240 (454)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  240 (454)
                      .....++++.++.++.++++.++..++++|.+++...+.. .  ...++++.|+.++.+++++++..++++|++++..++
T Consensus       222 ~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~  298 (529)
T 1jdh_A          222 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-E--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY  298 (529)
T ss_dssp             HHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC-S--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCH
T ss_pred             HHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh-H--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence            4455789999999999999999999999999999765432 1  123689999999999999999999999999998877


Q ss_pred             cchhhhhccCChHHHHHhhcCCc-chhHHHHHHHHHHHHhcCCHH---HHHHHHhCCChHHHHHHhhhcc-hhhHHHHHH
Q 012897          241 FQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWTISNITAGNRD---QIQAVIDAGLVGPLVNLLQNAE-FDIKKEAAW  315 (454)
Q Consensus       241 ~~~~~~~~~~~l~~L~~~L~~~~-~~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~ll~~~~-~~v~~~a~~  315 (454)
                      .....+.+.++++.|+.+|.+.. ++.++..|+++|+|++..+++   ....+.+.|+++.|++++.+++ +.++..++|
T Consensus       299 ~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~  378 (529)
T 1jdh_A          299 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG  378 (529)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHH
Confidence            77888889999999999997631 478999999999999875432   3556778999999999999876 599999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHH----------------------HHHhhhhhhhc
Q 012897          316 AISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLEN----------------------ILKVGEAEKNM  373 (454)
Q Consensus       316 aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~----------------------l~~~~~~~~~~  373 (454)
                      +|+|++...  +....+.+.|+++.|+.++.+++++++..+.|++.+                      +...       
T Consensus       379 ~l~nl~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~-------  449 (529)
T 1jdh_A          379 LIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-------  449 (529)
T ss_dssp             HHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTS-------
T ss_pred             HHHHHhcCh--hhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcC-------
Confidence            999999853  334677889999999999998777777766666555                      3221       


Q ss_pred             cCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 012897          374 GTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL  420 (454)
Q Consensus       374 ~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  420 (454)
                             ...+..+.+.|+++.|..++.+++++++..|.+.+..+..
T Consensus       450 -------~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~  489 (529)
T 1jdh_A          450 -------VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  489 (529)
T ss_dssp             -------HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             -------chHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence                   1135568889999999999999999999999999888764

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=5.1e-34  Score=268.37  Aligned_cols=314  Identities=19%  Similarity=0.175  Sum_probs=265.9

Q ss_pred             CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCH----------HHHHHhhcCCC-Chh-----HHH-------HHHHHH
Q 012897            8 DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVV----------PRFVEFLMRED-YPQ-----LQF-------EAAWAL   64 (454)
Q Consensus         8 ~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l----------~~L~~lL~~~~-~~~-----v~~-------~a~~~L   64 (454)
                      ++++++..|+|+|++++++. ++..+...+.+++          +.+++++.+.. +.+     +++       +|+|+|
T Consensus        94 ~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL  172 (458)
T 3nmz_A           94 GSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVL  172 (458)
T ss_dssp             CCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHH
Confidence            44799999999999999997 6667777777777          66777777652 122     444       999999


Q ss_pred             HHhcCCCchhhHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCChhhHHHHHh-cCChHHHHHH
Q 012897           65 TNIASGTSENTKVVIDHGAVPIFVKLLAS-----------PSDDVREQAVWALGNVAGDSPRCRDLVLS-QGALIPLLAQ  132 (454)
Q Consensus        65 ~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~l~~~  132 (454)
                      .|++. ++++|+.+.+.|+++.|+.+|..           .++.+++.|+|+|.|||.+.+..+..+.. .|.++.|+++
T Consensus       173 ~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~L  251 (458)
T 3nmz_A          173 MKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQ  251 (458)
T ss_dssp             HHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHG
T ss_pred             HHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHH
Confidence            99987 69999999999999999999941           34789999999999999888777776654 4559999999


Q ss_pred             hchhhhhhHHHHHHHHHHhhcCCC--CCCChhhhhchHHHHHHhh-cCCChhHHHHHHHHHHHhccCChHHHHHHH-HhC
Q 012897          133 LNERAKLSMLRNATWTLSNFCRGK--PQPPFDQVRPALPALAQLV-HSNDEEVLTDACWALSYLSDGTNDKIQAVI-EAG  208 (454)
Q Consensus       133 l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~  208 (454)
                      | .+.+++++..++|+|++|+...  .........|++|.|+.+| ++.++.++..++.+|.|++...++....+. ..|
T Consensus       252 L-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~G  330 (458)
T 3nmz_A          252 L-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDG  330 (458)
T ss_dssp             G-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTT
T ss_pred             H-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcC
Confidence            9 6788999999999999999752  2233444579999999975 567889999999999999985555545565 689


Q ss_pred             cHHHHHHhcCCCCCc----chhhHHHHHhHhhc---cCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcC
Q 012897          209 VCPRLVELLGHPSPS----VLIPALRTVGNIVT---GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG  281 (454)
Q Consensus       209 ~i~~L~~ll~~~~~~----v~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~  281 (454)
                      +++.|+.+|.++++.    ++..|+++|.|++.   .++..++.+.+.|+++.|+.+|.++ +..+++.|+|+|+|++.+
T Consensus       331 al~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~-~~~v~~~A~~aL~nLa~~  409 (458)
T 3nmz_A          331 ALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSAR  409 (458)
T ss_dssp             HHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS-CHHHHHHHHHHHHHHHSS
T ss_pred             cHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC-ChHHHHHHHHHHHHHHcC
Confidence            999999999886653    89999999999996   6777888889999999999999999 899999999999999988


Q ss_pred             CHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCC
Q 012897          282 NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGT  325 (454)
Q Consensus       282 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  325 (454)
                      +++.+..+++.|+++.|++++.++++.+++.|+++|.|++...+
T Consensus       410 ~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p  453 (458)
T 3nmz_A          410 NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  453 (458)
T ss_dssp             CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred             CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            89999999999999999999999999999999999999998653

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.8e-33  Score=282.06  Aligned_cols=397  Identities=17%  Similarity=0.167  Sum_probs=335.6

Q ss_pred             cccccC-CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897            2 VAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID   80 (454)
Q Consensus         2 v~~L~s-~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (454)
                      ++.|++ ++++++..|+.+|.+++..  .+....+.+.|+++.|+++|++++ +.++..|+++|.+++...+..+..+.+
T Consensus        62 v~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~~~~v~~  138 (644)
T 2z6h_A           62 VRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAKMAVRL  138 (644)
T ss_dssp             HHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchhHHHHHH
Confidence            445665 4899999999999988766  457888889999999999999998 999999999999999866778888889


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897           81 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP  160 (454)
Q Consensus        81 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (454)
                      .|+++.|+.+|+++++.++..++.+|.+++...+..+..+.+.|+++.|+.++.......++..++.+|++++.......
T Consensus       139 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~  218 (644)
T 2z6h_A          139 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP  218 (644)
T ss_dssp             TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHH
T ss_pred             CCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHH
Confidence            99999999999999999999999999999987888899999999999999999766667888999999999997655555


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897          161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD  240 (454)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  240 (454)
                      .....++++.++.++.+.+..++..++++|.+++...+..   ....++++.|+.++.++++.++..++++|++++..++
T Consensus       219 ~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~  295 (644)
T 2z6h_A          219 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY  295 (644)
T ss_dssp             HHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence            5556789999999999999999999999999999764321   1122679999999999999999999999999999877


Q ss_pred             cchhhhhccCChHHHHHhhcCCcc-hhHHHHHHHHHHHHhcCCH---HHHHHHHhCCChHHHHHHhhhcc-hhhHHHHHH
Q 012897          241 FQTQCIITYGALPYLLGLLTHSHK-KSIKKEACWTISNITAGNR---DQIQAVIDAGLVGPLVNLLQNAE-FDIKKEAAW  315 (454)
Q Consensus       241 ~~~~~~~~~~~l~~L~~~L~~~~~-~~v~~~a~~~L~nl~~~~~---~~~~~l~~~~~i~~L~~ll~~~~-~~v~~~a~~  315 (454)
                      ..+..+.+.++++.|+.++.+..+ +.++..|+++|+|++...+   .....+.+.++++.|++++.+++ +.+++.++|
T Consensus       296 ~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~  375 (644)
T 2z6h_A          296 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG  375 (644)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHH
Confidence            777888899999999999987423 7999999999999997433   22334668899999999999874 799999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCC----------------------HHHHHHHHHHHHHHHHhhhhhhhc
Q 012897          316 AISNATSGGTHEQIKYLVREGCIKPLCDLFVCPD----------------------PRIVTVCLEGLENILKVGEAEKNM  373 (454)
Q Consensus       316 aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~----------------------~~v~~~al~~L~~l~~~~~~~~~~  373 (454)
                      +|.|++...  +....+.+.++++.|++++...+                      .+++..++.+|.++.....     
T Consensus       376 ~L~nLa~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~-----  448 (644)
T 2z6h_A          376 LIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH-----  448 (644)
T ss_dssp             HHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHH-----
T ss_pred             HHHHHccCH--HHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHH-----
Confidence            999999853  33477789999999999987643                      4566677777777775431     


Q ss_pred             cCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 012897          374 GTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL  420 (454)
Q Consensus       374 ~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  420 (454)
                               .+..+.+.|+++.|..++.+.+++++..|...+..+..
T Consensus       449 ---------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~  486 (644)
T 2z6h_A          449 ---------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  486 (644)
T ss_dssp             ---------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             ---------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence                     35678889999999999999999999999988777654

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=3.9e-33  Score=283.69  Aligned_cols=396  Identities=17%  Similarity=0.178  Sum_probs=333.0

Q ss_pred             cccccC-CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897            2 VAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID   80 (454)
Q Consensus         2 v~~L~s-~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (454)
                      ++.|++ +|++++..|+.+|.+++..  ......+.+.|+++.|+++|++++ +.++..|+++|.+++...+..+..+.+
T Consensus       198 v~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~~~~v~~  274 (780)
T 2z6g_A          198 VRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGAKMAVRL  274 (780)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhhHHHHHH
Confidence            345654 4899999999999998766  455778889999999999999998 999999999999999977788888889


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897           81 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP  160 (454)
Q Consensus        81 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (454)
                      .|+++.|+.+|.+++..++..++.+|.+++..++..+..+.+.++++.|+.++........+..++.+|.+|+.......
T Consensus       275 ~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~  354 (780)
T 2z6g_A          275 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP  354 (780)
T ss_dssp             TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHH
T ss_pred             cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHH
Confidence            99999999999999999999999999999988888888999999999999999666666777889999999997654444


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897          161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD  240 (454)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  240 (454)
                      .....++++.|+.++.+.++.++..++++|.+++......   ....++++.|+.++.++++.++..|+++|++++.+++
T Consensus       355 ~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~  431 (780)
T 2z6g_A          355 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY  431 (780)
T ss_dssp             HHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH
T ss_pred             HHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence            4455789999999999999999999999999999765421   1123678999999999999999999999999999877


Q ss_pred             cchhhhhccCChHHHHHhhcCCcc-hhHHHHHHHHHHHHhcCCHH---HHHHHHhCCChHHHHHHhhhcch-hhHHHHHH
Q 012897          241 FQTQCIITYGALPYLLGLLTHSHK-KSIKKEACWTISNITAGNRD---QIQAVIDAGLVGPLVNLLQNAEF-DIKKEAAW  315 (454)
Q Consensus       241 ~~~~~~~~~~~l~~L~~~L~~~~~-~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~ll~~~~~-~v~~~a~~  315 (454)
                      ..+..+.+.++++.|+.+|.+..+ ..++..|+++|+|++...++   ....+...++++.|++++.+++. .++..|+|
T Consensus       432 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~  511 (780)
T 2z6g_A          432 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG  511 (780)
T ss_dssp             HHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHH
Confidence            778888899999999999986423 48999999999999874333   23466788999999999998764 99999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCC----------------------HHHHHHHHHHHHHHHHhhhhhhhc
Q 012897          316 AISNATSGGTHEQIKYLVREGCIKPLCDLFVCPD----------------------PRIVTVCLEGLENILKVGEAEKNM  373 (454)
Q Consensus       316 aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~----------------------~~v~~~al~~L~~l~~~~~~~~~~  373 (454)
                      +|+|++..  ......+.+.++++.|+.++.+.+                      ++++..++.+|.++.....     
T Consensus       512 aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~-----  584 (780)
T 2z6g_A          512 LIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIH-----  584 (780)
T ss_dssp             HHHHHHSS--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHH-----
T ss_pred             HHHHHhcC--HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChh-----
Confidence            99999973  455577888999999999987543                      3466677778887763211     


Q ss_pred             cCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 012897          374 GTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW  419 (454)
Q Consensus       374 ~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~  419 (454)
                               .+..+.+.|+++.|..++.+++++++..|...+..+.
T Consensus       585 ---------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~  621 (780)
T 2z6g_A          585 ---------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA  621 (780)
T ss_dssp             ---------HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             ---------hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence                     3567888999999999999999999999988877654

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=8.2e-30  Score=233.10  Aligned_cols=270  Identities=21%  Similarity=0.191  Sum_probs=234.3

Q ss_pred             hhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCChhhHHHHHh
Q 012897           54 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-----------PSDDVREQAVWALGNVAGDSPRCRDLVLS  122 (454)
Q Consensus        54 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  122 (454)
                      ...+..|+++|.+++. ++++|+.+++.|+++.|+.+|..           .++.+++.|+|+|.||+...+..+..+..
T Consensus        46 ~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~  124 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS  124 (354)
T ss_dssp             GGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3556789999999999 58999999999999999999942           34789999999999999888777777754


Q ss_pred             -cCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC--CCCChhhhhchHHHHHHh-hcCCChhHHHHHHHHHHHhccCCh
Q 012897          123 -QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK--PQPPFDQVRPALPALAQL-VHSNDEEVLTDACWALSYLSDGTN  198 (454)
Q Consensus       123 -~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~l~~l-l~~~~~~v~~~a~~~L~~l~~~~~  198 (454)
                       .|.++.|+++| .+++++++..++|+|++|+...  .........|++|.|+.+ +++.++.+++.++.+|.|++...+
T Consensus       125 ~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~  203 (354)
T 3nmw_A          125 MKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT  203 (354)
T ss_dssp             CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             cCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence             45599999999 6788999999999999999752  223344457999999997 567789999999999999998665


Q ss_pred             HHHHHHH-HhCcHHHHHHhcCCCCC----cchhhHHHHHhHhhc---cCccchhhhhccCChHHHHHhhcCCcchhHHHH
Q 012897          199 DKIQAVI-EAGVCPRLVELLGHPSP----SVLIPALRTVGNIVT---GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKE  270 (454)
Q Consensus       199 ~~~~~~~-~~~~i~~L~~ll~~~~~----~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~  270 (454)
                      +....+. ..|+++.|+.+|.++++    +++..|+++|.|++.   .++..++.+.+.|+++.|+.+|.++ +..+++.
T Consensus       204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~  282 (354)
T 3nmw_A          204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN  282 (354)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred             hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence            5555566 68999999999987655    389999999999996   5777888899999999999999998 8999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCH
Q 012897          271 ACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTH  326 (454)
Q Consensus       271 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~  326 (454)
                      |+|+|.|++.++++.++.+++.|+++.|++++.++++.+++.|+++|.|++...+.
T Consensus       283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~  338 (354)
T 3nmw_A          283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA  338 (354)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence            99999999988899999999999999999999999999999999999999987544

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=3.9e-30  Score=235.27  Aligned_cols=274  Identities=19%  Similarity=0.157  Sum_probs=237.4

Q ss_pred             CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCC----------CChhHHHHHHHHHHHhcCCCchhhHHH
Q 012897            9 DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE----------DYPQLQFEAAWALTNIASGTSENTKVV   78 (454)
Q Consensus         9 d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~----------~~~~v~~~a~~~L~~l~~~~~~~~~~~   78 (454)
                      +...+..|+++|.+++..  ++.++.+++.|+++.|+.+|..+          .++.++..|+++|.+++..++..+..+
T Consensus        45 ~~~~~~~A~~aL~nls~d--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i  122 (354)
T 3nmw_A           45 VEHQICPAVCVLMKLSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL  122 (354)
T ss_dssp             GGGTHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            345666899999999877  67899999999999999999521          227899999999999999777677777


Q ss_pred             HhC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC
Q 012897           79 IDH-GAVPIFVKLLASPSDDVREQAVWALGNVAGD-SPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  156 (454)
Q Consensus        79 ~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  156 (454)
                      ... |++|.|+.+|+++++++++.++++|.+|+.. ++..+..+.+.|+++.|+++|..+.+.++++.++++|++|+...
T Consensus       123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~  202 (354)
T 3nmw_A          123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC  202 (354)
T ss_dssp             HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence            554 5699999999999999999999999999974 56788999999999999998756678899999999999999844


Q ss_pred             -CCCChhh-hhchHHHHHHhhcCCCh----hHHHHHHHHHHHhcc---CChHHHHHHHHhCcHHHHHHhcCCCCCcchhh
Q 012897          157 -PQPPFDQ-VRPALPALAQLVHSNDE----EVLTDACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLGHPSPSVLIP  227 (454)
Q Consensus       157 -~~~~~~~-~~~~l~~l~~ll~~~~~----~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~  227 (454)
                       ....... ..|++|.|+.+|.+.++    +++..++++|.|++.   ..++....+.+.|+++.|+.+|.+++..+++.
T Consensus       203 ~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~  282 (354)
T 3nmw_A          203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN  282 (354)
T ss_dssp             HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHH
T ss_pred             hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHH
Confidence             2222333 57999999999987755    489999999999996   56777788999999999999999999999999


Q ss_pred             HHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHH
Q 012897          228 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ  285 (454)
Q Consensus       228 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~  285 (454)
                      |+++|+|++.+++..+..+.+.|+++.|+.+|.++ +..+++.|+|+|.|++.+.+..
T Consensus       283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~~~  339 (354)
T 3nmw_A          283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPAK  339 (354)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCCGG
T ss_pred             HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHHH
Confidence            99999999987888888899999999999999999 9999999999999999875543

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=4.7e-27  Score=207.77  Aligned_cols=240  Identities=30%  Similarity=0.427  Sum_probs=221.4

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 012897           39 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD  118 (454)
Q Consensus        39 ~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  118 (454)
                      |.++.|+++|++++ ++++..|+++|.+++...++.+..+.+.|+++.|+.+++++++.++..++++|++++...+..+.
T Consensus         2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            56899999999999 99999999999999997778999999999999999999999999999999999999988888999


Q ss_pred             HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 012897          119 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT  197 (454)
Q Consensus       119 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  197 (454)
                      .+.+.|+++.++.++ .+++++++..++++|.+++... .........++++.++.++.++++.++..++++|++++...
T Consensus        81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  159 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP  159 (252)
T ss_dssp             HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 6778999999999999999654 33334445789999999999999999999999999999988


Q ss_pred             hHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHH
Q 012897          198 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN  277 (454)
Q Consensus       198 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~n  277 (454)
                      +.....+.+.|+++.|+.++.++++.++..|+++|++++..++.....+.+.|+++.|+.++.++ ++.++..|+++|+|
T Consensus       160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~  238 (252)
T 4hxt_A          160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN  238 (252)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence            88778899999999999999999999999999999999998877788888999999999999998 99999999999999


Q ss_pred             HhcC
Q 012897          278 ITAG  281 (454)
Q Consensus       278 l~~~  281 (454)
                      ++..
T Consensus       239 l~~~  242 (252)
T 4hxt_A          239 IKSG  242 (252)
T ss_dssp             HHHT
T ss_pred             HHcC
Confidence            9974

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=1.2e-26  Score=205.27  Aligned_cols=241  Identities=29%  Similarity=0.431  Sum_probs=222.0

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC-CCCC
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPP  160 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~  160 (454)
                      |.++.|+.+|.+++++++..++++|.+++...+..+..+.+.|+++.+++++ .+.+++++..++++|.+++... ....
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            5689999999999999999999999999988888889999999999999999 6677999999999999999874 3334


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897          161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD  240 (454)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  240 (454)
                      .....++++.++.++.++++.++..++++|.+++...+.....+.+.|+++.++.++.++++.++..++++|++++...+
T Consensus        81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~  160 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD  160 (252)
T ss_dssp             HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence            44557899999999999999999999999999998878888889999999999999999999999999999999999887


Q ss_pred             cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHh
Q 012897          241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA  320 (454)
Q Consensus       241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  320 (454)
                      .....+.+.|+++.|+.++.++ ++.++..|+++|++++.+++.....+.+.|+++.|++++.++++.++..|+++|.++
T Consensus       161 ~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  239 (252)
T 4hxt_A          161 EAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI  239 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence            7777888999999999999988 999999999999999998888888999999999999999999999999999999999


Q ss_pred             cCCC
Q 012897          321 TSGG  324 (454)
Q Consensus       321 ~~~~  324 (454)
                      ....
T Consensus       240 ~~~~  243 (252)
T 4hxt_A          240 KSGG  243 (252)
T ss_dssp             HHTC
T ss_pred             HcCC
Confidence            8754

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=6.1e-27  Score=207.05  Aligned_cols=239  Identities=36%  Similarity=0.560  Sum_probs=218.8

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 012897           39 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD  118 (454)
Q Consensus        39 ~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  118 (454)
                      ...+.++.+|++++ ++++..|+++|.++....++.+..+.+.|+++.|+.+|+++++.++..++++|++++...+..+.
T Consensus        12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            45889999999999 89999999999886665778888999999999999999999999999999999999988888999


Q ss_pred             HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCC-ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 012897          119 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP-PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT  197 (454)
Q Consensus       119 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  197 (454)
                      .+.+.|+++.++.++ .++++.++..++++|.+++...+.. ......+++|.++.++.++++.++..++++|.+++...
T Consensus        91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  169 (252)
T 4db8_A           91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  169 (252)
T ss_dssp             HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 6678999999999999999886444 44556789999999999999999999999999999988


Q ss_pred             hHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHH
Q 012897          198 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN  277 (454)
Q Consensus       198 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~n  277 (454)
                      +.....+.+.++++.|+.++.++++.++..|+++|++++..++.....+.+.|+++.|+.++.++ ++.++..|+|+|+|
T Consensus       170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~  248 (252)
T 4db8_A          170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK  248 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred             hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            88888889999999999999999999999999999999988887888888999999999999998 99999999999999


Q ss_pred             Hhc
Q 012897          278 ITA  280 (454)
Q Consensus       278 l~~  280 (454)
                      ++.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            874

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=8.4e-27  Score=206.16  Aligned_cols=233  Identities=37%  Similarity=0.564  Sum_probs=210.8

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      ++.|+++|++++..|+++|.++++.. .+....+++.|+++.|+++|++++ +.++..|+++|++++.++++.+..+.+.
T Consensus        18 ~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~   95 (252)
T 4db8_A           18 TQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVIDA   95 (252)
T ss_dssp             HHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHc
Confidence            45789999999999999999988763 677888999999999999999999 9999999999999999889999999999


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCC-CC
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ-PP  160 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~  160 (454)
                      |+++.|+.+|+++++.++..++++|++++...+.....+.+.|+++.+++++ .+.+..++..++++|.+++...+. ..
T Consensus        96 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~  174 (252)
T 4db8_A           96 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQ  174 (252)
T ss_dssp             THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            9999999999999999999999999999977765548888999999999999 667899999999999999986522 22


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhc
Q 012897          161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT  237 (454)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  237 (454)
                      .....++++.|+.++.++++.++..++++|.+++...+.....+.+.|+++.|+.++.++++.++..|+++|++++.
T Consensus       175 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          175 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             HHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred             HHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence            33447899999999999999999999999999998888888889999999999999999999999999999999975

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.93  E-value=2.9e-25  Score=197.54  Aligned_cols=236  Identities=17%  Similarity=0.170  Sum_probs=197.2

Q ss_pred             hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH-hcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHh
Q 012897          180 EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGL  258 (454)
Q Consensus       180 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~  258 (454)
                      .+-+..|+..|.+++...+ ....+.+.|+++.++. +|.++++.++..|+++|++++.+++.....+++.|+++.|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            3567788999999987654 5566888999999999 9999999999999999999999888888889999999999999


Q ss_pred             hcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCc
Q 012897          259 LTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCI  338 (454)
Q Consensus       259 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i  338 (454)
                      |+++.+..+++.|+|+|+|++.+++...+.+.+.|+++.|+.++.++++.++..|+|+|.+++.. +++.+..+.+.|++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i  211 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMV  211 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCH
Confidence            98643788999999999999998888888888999999999999999999999999999999886 55778888999999


Q ss_pred             HHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCC-CHHHHHHHHHHHHH
Q 012897          339 KPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHD-NNEIYEKAVKILET  417 (454)
Q Consensus       339 ~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~-~~~v~~~a~~~l~~  417 (454)
                      +.|+.++.+++++++..++++|.++++......+....  ....+...+.+     .++.++.++ +.+++++|..++++
T Consensus       212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~--~~~~l~~lL~~-----~~~~lq~~e~~~e~~~~~~~il~~  284 (296)
T 1xqr_A          212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE--PELGLEELLRH-----RCQLLQQHEEYQEELEFCEKLLQT  284 (296)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC--GGGCHHHHHHH-----HHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhc--cHHHHHHHHHH-----HHHHccchHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999875432211000  11224555553     366777666 79999999999999


Q ss_pred             hcCcCCC
Q 012897          418 YWLEEDD  424 (454)
Q Consensus       418 ~~~~~~~  424 (454)
                      ||..+++
T Consensus       285 ~f~~~~~  291 (296)
T 1xqr_A          285 CFSSPAD  291 (296)
T ss_dssp             HCC----
T ss_pred             HcCCCCC
Confidence            9976543

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.92  E-value=9.4e-24  Score=205.60  Aligned_cols=347  Identities=15%  Similarity=0.130  Sum_probs=273.8

Q ss_pred             HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC-CChHHHH
Q 012897           10 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH-GAVPIFV   88 (454)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~   88 (454)
                      ..++..|+..|.++.+..+.... .+  ....+.+.++|.+++ .+-+..|++.|..++. .++.+..+.+. ++++.|+
T Consensus       308 ~~ir~lAavvL~KL~~~~~~~~~-si--~~La~~~~~~L~~~~-~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv  382 (778)
T 3opb_A          308 EDVQIYSALVLVKTWSFTKLTCI-NL--KQLSEIFINAISRRI-VPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILL  382 (778)
T ss_dssp             GGGHHHHHHHHHHHTGGGTCTTC-CH--HHHHHHHHHHTTTCC-HHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcC-cH--HHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHH
Confidence            57889999999999876532221 11  125778889999877 6679999999999998 78888888765 6699999


Q ss_pred             HhhCC-CCHHHHHHHHHHHHHhhCCChh--------------------------------------hHHHHHhcCChHHH
Q 012897           89 KLLAS-PSDDVREQAVWALGNVAGDSPR--------------------------------------CRDLVLSQGALIPL  129 (454)
Q Consensus        89 ~lL~~-~~~~v~~~a~~~L~~l~~~~~~--------------------------------------~~~~~~~~~~i~~l  129 (454)
                      .++++ .+..+...++.+|.|++.+.+.                                      .+..+.+.|+++.|
T Consensus       383 ~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~L  462 (778)
T 3opb_A          383 TMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFL  462 (778)
T ss_dssp             HHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHH
T ss_pred             HHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHH
Confidence            99995 7788999999999999964321                                      34567788999999


Q ss_pred             HHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChh---HHHHHHHHHHHhccCChHHHHHHHH
Q 012897          130 LAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEE---VLTDACWALSYLSDGTNDKIQAVIE  206 (454)
Q Consensus       130 ~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~---v~~~a~~~L~~l~~~~~~~~~~~~~  206 (454)
                      +.++ .+.++.++..++++|.+|+.+...+......|+++.|+.++.+....   .+..|+.+|.++....+...  .+.
T Consensus       463 v~Ll-~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~  539 (778)
T 3opb_A          463 KREM-HNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFK  539 (778)
T ss_dssp             HHHG-GGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSS
T ss_pred             HHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcC
Confidence            9999 67789999999999999998866666667789999999999887554   89999999999985543322  221


Q ss_pred             ----hCcHHHHHHhcCC-CCCc---------c----hhhHHHHHhHhhccCc----cchhhhhcc-CChHHHHHhhcCCc
Q 012897          207 ----AGVCPRLVELLGH-PSPS---------V----LIPALRTVGNIVTGDD----FQTQCIITY-GALPYLLGLLTHSH  263 (454)
Q Consensus       207 ----~~~i~~L~~ll~~-~~~~---------v----~~~a~~~L~~l~~~~~----~~~~~~~~~-~~l~~L~~~L~~~~  263 (454)
                          .++++.|+.+|.. +...         .    +..|+.+|.|++..++    ..+..+++. |+++.|..+|.++ 
T Consensus       540 ~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~-  618 (778)
T 3opb_A          540 KYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE-  618 (778)
T ss_dssp             SSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS-
T ss_pred             CCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC-
Confidence                3789999999983 2211         1    6689999999998763    235667775 8999999999998 


Q ss_pred             chhHHHHHHHHHHHHhcCCHHHH-HHHHhCC------ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHc-
Q 012897          264 KKSIKKEACWTISNITAGNRDQI-QAVIDAG------LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVRE-  335 (454)
Q Consensus       264 ~~~v~~~a~~~L~nl~~~~~~~~-~~l~~~~------~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-  335 (454)
                      +..+|+.|+++++|++.. ++.+ +.+.+.+      -++.|+.++..++.++|..|+|+|.+++.. .+..+..+.+. 
T Consensus       619 n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~-~~~ia~~ll~~~  696 (778)
T 3opb_A          619 NVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT-IPLIAKELLTKK  696 (778)
T ss_dssp             SHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH-CHHHHHHHTTCH
T ss_pred             CHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC-ChHHHHHHHHcc
Confidence            899999999999999974 4332 2333211      377899999999999999999999999653 44556666765 


Q ss_pred             CCcHHHhhccCC--CCHHHHHHHHHHHHHHHHhh
Q 012897          336 GCIKPLCDLFVC--PDPRIVTVCLEGLENILKVG  367 (454)
Q Consensus       336 ~~i~~L~~~l~~--~~~~v~~~al~~L~~l~~~~  367 (454)
                      ++++.++.+++.  ++++++..++.+++|++...
T Consensus       697 ~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~  730 (778)
T 3opb_A          697 ELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI  730 (778)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred             ccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence            789999999998  89999999999999999754

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.91  E-value=7.7e-23  Score=199.23  Aligned_cols=386  Identities=14%  Similarity=0.123  Sum_probs=290.4

Q ss_pred             HHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHh
Q 012897           11 SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL   90 (454)
Q Consensus        11 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l   90 (454)
                      .....++..+.+.++.  ....+.++..+.++.|.+.+++   ..++..|+-+|+++..........+.  ...+.+.++
T Consensus       270 ~~~~~a~L~lLsaACi--~~~cR~~I~~~~~~~L~~~l~~---~~ir~lAavvL~KL~~~~~~~~~si~--~La~~~~~~  342 (778)
T 3opb_A          270 LQFTKELLRLLSSACI--DETMRTYITENYLQLLERSLNV---EDVQIYSALVLVKTWSFTKLTCINLK--QLSEIFINA  342 (778)
T ss_dssp             HHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHHHHHHTTS---GGGHHHHHHHHHHHTGGGTCTTCCHH--HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhC--CcHHHHHHHHhHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCCCcCcHH--HHHHHHHHH
Confidence            3344555555566666  3556777788889999999864   58899999999998863322111111  256777888


Q ss_pred             hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh-cCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC---------
Q 012897           91 LASPSDDVREQAVWALGNVAGDSPRCRDLVLS-QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP---------  160 (454)
Q Consensus        91 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~---------  160 (454)
                      |.+++.+-+..|++.|+-++.+. ..++.+.. .+.+..|++++....+..+...++.+|.|++.+.+...         
T Consensus       343 L~~~~~~~~~~AvEgLaYLSl~~-~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~L  421 (778)
T 3opb_A          343 ISRRIVPKVEMSVEALAYLSLKA-SVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXX  421 (778)
T ss_dssp             TTTCCHHHHHHHHHHHHHHTTSS-HHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC-----
T ss_pred             HhcCCccHHHHHHHHHHHHhCCH-HHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhh
Confidence            88877666999999999997554 46666555 45689999999545678899999999999998653210         


Q ss_pred             ------------------------------hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcH
Q 012897          161 ------------------------------FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC  210 (454)
Q Consensus       161 ------------------------------~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i  210 (454)
                                                    .....|++|.|+.++.++++.++..++++|.+++.. +.....+++.|++
T Consensus       422 k~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal  500 (778)
T 3opb_A          422 XXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAV  500 (778)
T ss_dssp             -------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHH
T ss_pred             hhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCH
Confidence                                          012278999999999999999999999999999966 5566788999999


Q ss_pred             HHHHHhcCCCCCc---chhhHHHHHhHhhccCccchhhhhc----cCChHHHHHhhcC-Ccch------------hHHHH
Q 012897          211 PRLVELLGHPSPS---VLIPALRTVGNIVTGDDFQTQCIIT----YGALPYLLGLLTH-SHKK------------SIKKE  270 (454)
Q Consensus       211 ~~L~~ll~~~~~~---v~~~a~~~L~~l~~~~~~~~~~~~~----~~~l~~L~~~L~~-~~~~------------~v~~~  270 (454)
                      +.|+.++.+....   .+..|+.+|++++.......  ++.    .+.++.|+.+|.. +...            .-+.+
T Consensus       501 ~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~fe  578 (778)
T 3opb_A          501 KIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYE  578 (778)
T ss_dssp             HHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHH
T ss_pred             HHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHH
Confidence            9999999887544   79999999999985433111  111    3889999999983 2111            12779


Q ss_pred             HHHHHHHHhcCC----HHHHHHHHhC-CChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHH-HHHHH------cCCc
Q 012897          271 ACWTISNITAGN----RDQIQAVIDA-GLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQI-KYLVR------EGCI  338 (454)
Q Consensus       271 a~~~L~nl~~~~----~~~~~~l~~~-~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~-~~l~~------~~~i  338 (454)
                      |+.+|.|++..+    ++.++.+++. |+++.|..++.+++..+|+.|+++++|++...  +.+ ..+..      .+.+
T Consensus       579 AL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~--e~i~~k~~~~~~~~~~~rL  656 (778)
T 3opb_A          579 ALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHP--LTIAAKFFNLENPQSLRNF  656 (778)
T ss_dssp             HHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG--GGTGGGTSCCSSHHHHHHH
T ss_pred             HHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc--HHHHHHHHhhcCchhhccH
Confidence            999999999865    3446677875 89999999999999999999999999999843  322 12221      1237


Q ss_pred             HHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcC--CCHHHHHHHHHHHH
Q 012897          339 KPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH--DNNEIYEKAVKILE  416 (454)
Q Consensus       339 ~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~--~~~~v~~~a~~~l~  416 (454)
                      +.|+.+++.++.+++..|.++|.++....+..            ...++...++++.+..++..  ++++++.++..++.
T Consensus       657 ~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i------------a~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~  724 (778)
T 3opb_A          657 NILVKLLQLSDVESQRAVAAIFANIATTIPLI------------AKELLTKKELIENAIQVFADQIDDIELRQRLLMLFF  724 (778)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH------------HHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH------------HHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence            78999999999999999999999996543321            24455555899999998877  89999999999999


Q ss_pred             HhcCc
Q 012897          417 TYWLE  421 (454)
Q Consensus       417 ~~~~~  421 (454)
                      .++..
T Consensus       725 NL~~~  729 (778)
T 3opb_A          725 GLFEV  729 (778)
T ss_dssp             HHHTT
T ss_pred             HHHHh
Confidence            99873

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.91  E-value=5.5e-23  Score=176.23  Aligned_cols=198  Identities=40%  Similarity=0.593  Sum_probs=184.5

Q ss_pred             hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchh
Q 012897          165 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ  244 (454)
Q Consensus       165 ~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  244 (454)
                      .+..+.+..++.++++.++..++++|.+++...+.....+.+.|+++.++.+|.++++.++..|+++|++++.+++....
T Consensus        11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (210)
T 4db6_A           11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (210)
T ss_dssp             --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence            56788999999999999999999999999988888888899999999999999999999999999999999988887888


Q ss_pred             hhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCC
Q 012897          245 CIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG  324 (454)
Q Consensus       245 ~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  324 (454)
                      .+.+.|+++.|+.+|+++ ++.++..|+|+|+|++.++++....+++.|+++.|++++.++++.++..|+++|.+++.. 
T Consensus        91 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~-  168 (210)
T 4db6_A           91 AVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-  168 (210)
T ss_dssp             HHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-
T ss_pred             HHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-
Confidence            899999999999999999 999999999999999998888888889999999999999999999999999999999985 


Q ss_pred             CHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHH
Q 012897          325 THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENIL  364 (454)
Q Consensus       325 ~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~  364 (454)
                      .++....+.+.|+++.|+.++.+++++++..++++|.++.
T Consensus       169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence            4677788889999999999999999999999999999885

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.91  E-value=9e-23  Score=174.90  Aligned_cols=200  Identities=35%  Similarity=0.514  Sum_probs=181.0

Q ss_pred             HHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 012897           36 IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR  115 (454)
Q Consensus        36 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  115 (454)
                      ...+..+.|+.+|++++ ++++..|+++|.+++..+++.+..+.+.|+++.|+.+|.++++.++..++++|++++...+.
T Consensus         9 ~~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~   87 (210)
T 4db6_A            9 HHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE   87 (210)
T ss_dssp             ----CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             cccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence            34578999999999999 99999999999999987899999999999999999999999999999999999999988888


Q ss_pred             hHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCC-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 012897          116 CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ-PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS  194 (454)
Q Consensus       116 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~  194 (454)
                      .+..+.+.|+++.++.++ .++++.++..++++|.+++...+. .......++++.|+.++.++++.++..++++|.+++
T Consensus        88 ~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  166 (210)
T 4db6_A           88 QIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA  166 (210)
T ss_dssp             HHHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            899999999999999999 677899999999999999976532 223445789999999999999999999999999999


Q ss_pred             cCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhc
Q 012897          195 DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT  237 (454)
Q Consensus       195 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  237 (454)
                      ...+.....+.+.|+++.|+.++.++++.++..|+++|.+++.
T Consensus       167 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          167 SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             TSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             cCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            9878888888999999999999999999999999999999975

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.88  E-value=1.9e-21  Score=172.97  Aligned_cols=239  Identities=15%  Similarity=0.119  Sum_probs=191.9

Q ss_pred             HHHHHHhhcCCC-----------ChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHH
Q 012897           41 VPRFVEFLMRED-----------YPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSDDVREQAVWALGN  108 (454)
Q Consensus        41 l~~L~~lL~~~~-----------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~~  108 (454)
                      ++..+..|.++.           +.+-+..|+..|..++. +.++...+.+.|+++.|+. +|.++++.++..|+|+|++
T Consensus        30 mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~  108 (296)
T 1xqr_A           30 MKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGT  108 (296)
T ss_dssp             HHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            455666666642           13568889999999998 6678888899999999999 9999999999999999999


Q ss_pred             hhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCC-CChhhhhchHHHHHHhhcCCChhHHHHHH
Q 012897          109 VAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ-PPFDQVRPALPALAQLVHSNDEEVLTDAC  187 (454)
Q Consensus       109 l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~l~~ll~~~~~~v~~~a~  187 (454)
                      ++.+++..+..+.+.|+++.|+.++..+++..+++.|+|+|++++.+.+. .......+++|.|+.+|++++..++..++
T Consensus       109 ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~  188 (296)
T 1xqr_A          109 CSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSA  188 (296)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence            99999999999999999999999995556789999999999999987533 22334478999999999999999999999


Q ss_pred             HHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhcc--CC---hHHHHHhhcCC
Q 012897          188 WALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITY--GA---LPYLLGLLTHS  262 (454)
Q Consensus       188 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~---l~~L~~~L~~~  262 (454)
                      |+|.+++...++....+++.|+++.|+.+|.++++.++..++.+|++++...+.........  .+   +..-.+.++..
T Consensus       189 ~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~  268 (296)
T 1xqr_A          189 FLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQH  268 (296)
T ss_dssp             HHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccch
Confidence            99999998888888999999999999999999999999999999999998754332222111  11   11223334423


Q ss_pred             c-chhHHHHHHHHHHHHhc
Q 012897          263 H-KKSIKKEACWTISNITA  280 (454)
Q Consensus       263 ~-~~~v~~~a~~~L~nl~~  280 (454)
                      + ..++.+.+..++.++..
T Consensus       269 e~~~e~~~~~~~il~~~f~  287 (296)
T 1xqr_A          269 EEYQEELEFCEKLLQTCFS  287 (296)
T ss_dssp             GGGHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHcC
Confidence            1 34566667777776664

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.85  E-value=7.6e-21  Score=161.59  Aligned_cols=197  Identities=19%  Similarity=0.140  Sum_probs=170.1

Q ss_pred             CHHHHHHhhcCCCCh--hHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 012897           40 VVPRFVEFLMREDYP--QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR  117 (454)
Q Consensus        40 ~l~~L~~lL~~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  117 (454)
                      .+|.++++|.+++ +  +++..|+++|.+++..+++.+..+.+.|+||.|+.+|+++++++++.|+|+|.||+.+++..+
T Consensus         9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            4899999999998 6  899999999999998788999999999999999999999999999999999999998888899


Q ss_pred             HHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhc----------------CCChh
Q 012897          118 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH----------------SNDEE  181 (454)
Q Consensus       118 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~----------------~~~~~  181 (454)
                      ..+.+.|+++.|+++|....+.++++.++.+|++|+...... .....+.+|.|+.++.                ..++.
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k-~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK-NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH-HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH-HHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence            999999999999999955678899999999999999875433 3334567888887652                13678


Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhcCC------CCCcchhhHHHHHhHhhcc
Q 012897          182 VLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLGH------PSPSVLIPALRTVGNIVTG  238 (454)
Q Consensus       182 v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~  238 (454)
                      ++.++..+|.|++..+++..+.+.+. |+++.|+.+++.      .+...++.|+.+|.||++.
T Consensus       167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            99999999999998776776777765 678999999864      3567889999999999874

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.83  E-value=3.3e-19  Score=177.26  Aligned_cols=344  Identities=11%  Similarity=0.113  Sum_probs=248.1

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hhH
Q 012897           39 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP-RCR  117 (454)
Q Consensus        39 ~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~  117 (454)
                      .++|.+..++.+++ +.+|..++.+|+.++.....   ......+++.++.+++++++.+|..+++++..++.... ..+
T Consensus       242 ~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~  317 (588)
T 1b3u_A          242 LVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCR  317 (588)
T ss_dssp             HTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTH
T ss_pred             HHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhh
Confidence            35666666666666 67777777777777651111   11223568888888888889999999999998874332 111


Q ss_pred             HHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 012897          118 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT  197 (454)
Q Consensus       118 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  197 (454)
                      ........++.+..++ .+++..++..++++|..++....  .......++|.+..++.+.++.++..++.++..++...
T Consensus       318 ~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~  394 (588)
T 1b3u_A          318 ENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPILG--KDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI  394 (588)
T ss_dssp             HHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHHC--HHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHS
T ss_pred             hhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhh--HhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhc
Confidence            1112233566777777 67788999999999999875421  11223567889999999999999999999998887543


Q ss_pred             hHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHH
Q 012897          198 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN  277 (454)
Q Consensus       198 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~n  277 (454)
                      ...   .....+++.+..++.++++.+|..++.+++.++.....   ......+++.+...+.++ +..+|..|+.+++.
T Consensus       395 ~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~  467 (588)
T 1b3u_A          395 GIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV---EFFDEKLNSLCMAWLVDH-VYAIREAATSNLKK  467 (588)
T ss_dssp             CHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG---GGCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHH
T ss_pred             CHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCH---HHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHH
Confidence            211   12236788888889999999999999999999853221   122335678899999888 89999999999999


Q ss_pred             HhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHH
Q 012897          278 ITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCL  357 (454)
Q Consensus       278 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al  357 (454)
                      ++......   .....++|.+..++.++++.+|..++++++.++.....+    .....+++.|..+++++++.++..++
T Consensus       468 l~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~  540 (588)
T 1b3u_A          468 LVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVA  540 (588)
T ss_dssp             HHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHH
T ss_pred             HHHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHHHHH
Confidence            98631111   112457888888888889999999999999997632221    13345899999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 012897          358 EGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW  419 (454)
Q Consensus       358 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~  419 (454)
                      ++|..+.......            +    .....++.|..+.++++++++..|...+..+-
T Consensus       541 ~~l~~l~~~~~~~------------~----~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          541 KSLQKIGPILDNS------------T----LQSEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHHGGGSCHH------------H----HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhchh------------h----hHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence            9999998643221            1    11344577788889999999999999988653

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.82  E-value=5.3e-20  Score=156.42  Aligned_cols=192  Identities=18%  Similarity=0.194  Sum_probs=161.0

Q ss_pred             CcccccCCCH--HHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHH
Q 012897            1 MVAGVWSDDS--SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVV   78 (454)
Q Consensus         1 lv~~L~s~d~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   78 (454)
                      +|+.|+++|+  +++..|+++|.+++... .+....+++.|++|.|+++|.+++ ++++..|+++|.+++.++++++..+
T Consensus        13 lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~nk~~I   90 (233)
T 3tt9_A           13 AVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDNKLEV   90 (233)
T ss_dssp             HHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            3678999998  99999999999998765 567788999999999999999988 9999999999999999889999999


Q ss_pred             HhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhch---------------hhhhhHH
Q 012897           79 IDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE---------------RAKLSML  142 (454)
Q Consensus        79 ~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~---------------~~~~~~~  142 (454)
                      .+.|+|+.|+.+|. +++.++++.++.+|++|+... ..+..+.+. +++.|+.++..               ..+++++
T Consensus        91 ~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~-~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~  168 (233)
T 3tt9_A           91 AELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND-KLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDIF  168 (233)
T ss_dssp             HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG-GGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHH
T ss_pred             HHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh-hhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHHH
Confidence            99999999999998 578999999999999998654 466666664 58888876531               1256899


Q ss_pred             HHHHHHHHhhcCCC-CCCChhh-hhchHHHHHHhhcC------CChhHHHHHHHHHHHhccC
Q 012897          143 RNATWTLSNFCRGK-PQPPFDQ-VRPALPALAQLVHS------NDEEVLTDACWALSYLSDG  196 (454)
Q Consensus       143 ~~a~~~L~~l~~~~-~~~~~~~-~~~~l~~l~~ll~~------~~~~v~~~a~~~L~~l~~~  196 (454)
                      +++..+|++|+... ..+.... ..|+++.|+.+++.      .+.+.+++++.+|.|++..
T Consensus       169 ~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          169 YNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            99999999999865 3333332 35788999999875      2668899999999999864

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.81  E-value=1.2e-18  Score=173.36  Aligned_cols=376  Identities=12%  Similarity=0.108  Sum_probs=282.6

Q ss_pred             ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 012897            3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG   82 (454)
Q Consensus         3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g   82 (454)
                      +.++++++.+|..|+.+|..++...+.    ......++|.+..++++++ +.+|..|+.+|..++...+.   ......
T Consensus       171 ~l~~d~~~~VR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~---~~~~~~  242 (588)
T 1b3u_A          171 NLCSDDTPMVRRAAASKLGEFAKVLEL----DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQ---EDLEAL  242 (588)
T ss_dssp             HHHTCSCHHHHHHHHHHHHHHHHTSCH----HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCH---HHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHhcH----HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCH---HHHHHH
Confidence            345788999999999999999876421    1234567899999999888 89999999999998863222   112234


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh-
Q 012897           83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF-  161 (454)
Q Consensus        83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~-  161 (454)
                      +++.+..++.++++.+|..++.+++.++....   ........++.+..++ .++++.++..+++++..++...+.... 
T Consensus       243 ~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~  318 (588)
T 1b3u_A          243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENLSADCRE  318 (588)
T ss_dssp             THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHHhC---cccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHhChhhhh
Confidence            78888899999999999999999999974221   1122334578888888 677889999999999999876432211 


Q ss_pred             -hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897          162 -DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD  240 (454)
Q Consensus       162 -~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  240 (454)
                       .....++|.+..++.+.++.++..++++|..++......   .....+++.+..++.++++.+|..++.+++.++....
T Consensus       319 ~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~  395 (588)
T 1b3u_A          319 NVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG  395 (588)
T ss_dssp             HHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcC
Confidence             345778899999999999999999999999987532211   1223578889999999999999999999998886432


Q ss_pred             cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcC-CHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHH
Q 012897          241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN  319 (454)
Q Consensus       241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~  319 (454)
                      ..   .....+++.+..++.+. ++.+|..++.++..++.. .++    .....+++.+..++.+++..+|..|+.++..
T Consensus       396 ~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~  467 (588)
T 1b3u_A          396 IR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAATSNLKK  467 (588)
T ss_dssp             HH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred             HH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            11   12235678888888888 999999999999998752 111    1112357888888888899999999999999


Q ss_pred             hcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHH
Q 012897          320 ATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENL  399 (454)
Q Consensus       320 l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l  399 (454)
                      ++.....+.    ....+++.|..+++++++.++..+++++..+.......                ......++.+.++
T Consensus       468 l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~----------------~~~~~~~~~l~~~  527 (588)
T 1b3u_A          468 LVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----------------ITTKHMLPTVLRM  527 (588)
T ss_dssp             HHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----------------HHHHHTHHHHHHG
T ss_pred             HHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH----------------HHHHHHHHHHHhh
Confidence            987533332    22357888888889999999999999999998754321                1113456788888


Q ss_pred             hcCCCHHHHHHHHHHHHHhcCc
Q 012897          400 QSHDNNEIYEKAVKILETYWLE  421 (454)
Q Consensus       400 ~~~~~~~v~~~a~~~l~~~~~~  421 (454)
                      .++++++|+..+.+.+..+...
T Consensus       528 l~d~~~~Vr~~a~~~l~~l~~~  549 (588)
T 1b3u_A          528 AGDPVANVRFNVAKSLQKIGPI  549 (588)
T ss_dssp             GGCSCHHHHHHHHHHHHHHGGG
T ss_pred             CCCCCchHHHHHHHHHHHHHHH
Confidence            8999999999999999888753

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.81  E-value=4.6e-19  Score=183.70  Aligned_cols=350  Identities=14%  Similarity=0.153  Sum_probs=256.4

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH--
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVI--   79 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--   79 (454)
                      ++.|.++++.+|..++.++..++......     ...++++.|++.+.+++ +.++..++.+|+.++...+.....-.  
T Consensus        96 l~~l~~~~~~vr~~~a~~i~~ia~~~~~~-----~wp~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~~~~~  169 (852)
T 4fdd_A           96 LNNIGDSSPLIRATVGILITTIASKGELQ-----NWPDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDSDVLD  169 (852)
T ss_dssp             HTTTTCSSHHHHHHHHHHHHHHHHHTTTT-----TCTTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHHCSSS
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHhcCcc-----ccHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhchhhhc
Confidence            45678889999999999999998874221     13467999999999988 89999999999999974333211100  


Q ss_pred             --hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCC
Q 012897           80 --DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP  157 (454)
Q Consensus        80 --~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  157 (454)
                        -..+++.+++++.++++.+|..|++++.++....+...... -...++.+...+ .++++.++..++++|..++...+
T Consensus       170 ~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~-~~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~~~~~  247 (852)
T 4fdd_A          170 RPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH-IDSFIENLFALA-GDEEPEVRKNVCRALVMLLEVRM  247 (852)
T ss_dssp             SCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS-HHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHHHCH
T ss_pred             chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhCH
Confidence              12356777778888999999999999998875543211000 012456666666 66788999999999999997653


Q ss_pred             CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHH---hCcHHHHHHhc-----------CC----
Q 012897          158 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIE---AGVCPRLVELL-----------GH----  219 (454)
Q Consensus       158 ~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~---~~~i~~L~~ll-----------~~----  219 (454)
                      ..-.....++++.+..++.+.++.++..++.++..++.....  ...+.   ..+++.++..+           .+    
T Consensus       248 ~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~--~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed  325 (852)
T 4fdd_A          248 DRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC--KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGG  325 (852)
T ss_dssp             HHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH--HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH--HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccc
Confidence            222234467888899999999999999999999999865421  11222   14566666666           33    


Q ss_pred             -------CCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhC
Q 012897          220 -------PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDA  292 (454)
Q Consensus       220 -------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~  292 (454)
                             .++.+|..+..+|..++...+.   .++. .+++.+...+.++ ++.+|..|++++++++.+..+.....+ .
T Consensus       326 ~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~-~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~l-~  399 (852)
T 4fdd_A          326 SGGDDTISDWNLRKCSAAALDVLANVYRD---ELLP-HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYL-P  399 (852)
T ss_dssp             -------CCCCHHHHHHHHHHHHHHHHGG---GGHH-HHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGGH-H
T ss_pred             cccccccccchHHHHHHHHHHHHHHhccH---HHHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHHH-H
Confidence                   3456799999999999875432   1222 4678888888888 999999999999999987766544333 4


Q ss_pred             CChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHH-HHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhh
Q 012897          293 GLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHE-QIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEA  369 (454)
Q Consensus       293 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~-~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~  369 (454)
                      ++++.++..+.++++.||..++|++++++...... ...+  -..+++.|+..+.++++.++..++++|.++++....
T Consensus       400 ~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~--~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~  475 (852)
T 4fdd_A          400 ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY--LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT  475 (852)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTT--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhH
Confidence            57899999999999999999999999997631110 0011  124678888889889999999999999999976554

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.79  E-value=2.3e-18  Score=178.38  Aligned_cols=388  Identities=14%  Similarity=0.133  Sum_probs=273.5

Q ss_pred             ccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCh
Q 012897            5 VWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAV   84 (454)
Q Consensus         5 L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i   84 (454)
                      +.+.++.+|..|+..|++.+... -.....-....+-+.+++.|.+++ +.+|..++.+++.++......    .-.+.+
T Consensus        57 ~~~~~~~vR~~a~~~Lkn~i~~~-w~~~~~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~----~wp~ll  130 (852)
T 4fdd_A           57 LKSEDEPTRSLSGLILKNNVKAH-FQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQ----NWPDLL  130 (852)
T ss_dssp             CTTSCHHHHHHHHHHHHHHTTTS-GGGCCHHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTT----TCTTHH
T ss_pred             cCCCChHHHHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCcc----ccHHHH
Confidence            35778999999999999987642 111111123345566778888888 899999999999998732110    113678


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH----hcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897           85 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVL----SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP  160 (454)
Q Consensus        85 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~----~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (454)
                      +.|+..+.++++.+++.++.+|+.++...+.....-.    -...++.+++.+ .+++..++..|++++..+....+...
T Consensus       131 ~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~A~~aL~~~~~~~~~~~  209 (852)
T 4fdd_A          131 PKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF-KHSSPKIRSHAVACVNQFIISRTQAL  209 (852)
T ss_dssp             HHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT-TCSSHHHHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcccHHH
Confidence            9999999999999999999999999854332211000    011345555555 56788999999999998876533211


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897          161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD  240 (454)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  240 (454)
                      ......+++.+..++.++++.++..++++|..++...+......+. ++++.++..+.+.++.+|..|+.++..++....
T Consensus       210 ~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~  288 (852)
T 4fdd_A          210 MLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQPI  288 (852)
T ss_dssp             HTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT
T ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh
Confidence            2233578889999999999999999999999999876655443333 578888888899999999999999999986432


Q ss_pred             cchhhhhc---cCChHHHHHhhc-----------C--C--------cchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChH
Q 012897          241 FQTQCIIT---YGALPYLLGLLT-----------H--S--------HKKSIKKEACWTISNITAGNRDQIQAVIDAGLVG  296 (454)
Q Consensus       241 ~~~~~~~~---~~~l~~L~~~L~-----------~--~--------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~  296 (454)
                       .. ..+.   ..+++.++..+.           +  .        ....+|..|+.++..++...++   .++ ..+++
T Consensus       289 -~~-~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~-~~l~~  362 (852)
T 4fdd_A          289 -CK-DVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELL-PHILP  362 (852)
T ss_dssp             -HH-HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGH-HHHHH
T ss_pred             -HH-HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHH
Confidence             11 1122   134566666662           2  0        1345799999999998863222   112 23577


Q ss_pred             HHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCC
Q 012897          297 PLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTA  376 (454)
Q Consensus       297 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~  376 (454)
                      .+.+.+.++++.+|..|++++++++.........+  -.++++.+...++++++.|+..+++++.++.........    
T Consensus       363 ~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~--l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~----  436 (852)
T 4fdd_A          363 LLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY--LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP----  436 (852)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGG--HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCT----
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchH----
Confidence            78888888899999999999999998754322222  235789999999999999999999999999875433110    


Q ss_pred             cccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Q 012897          377 TADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLE  421 (454)
Q Consensus       377 ~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  421 (454)
                          ..+.     .+.++.|.+.+.++++.++..|.+.+..+.+.
T Consensus       437 ----~~~~-----~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~  472 (852)
T 4fdd_A          437 ----DTYL-----KPLMTELLKRILDSNKRVQEAACSAFATLEEE  472 (852)
T ss_dssp             ----TTTH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence                0011     23456667777788999999999998887643

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.77  E-value=2.3e-17  Score=163.07  Aligned_cols=328  Identities=18%  Similarity=0.167  Sum_probs=231.9

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      .+.|+++|+.+|..|+++|.++...   +...     .+++.+.+++.+++ +.+|..|+.++.++...+++...   +.
T Consensus        92 ~kdL~~~n~~ir~~AL~~L~~i~~~---~~~~-----~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~~---~~  159 (591)
T 2vgl_B           92 VKDCEDPNPLIRALAVRTMGCIRVD---KITE-----YLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMVE---DQ  159 (591)
T ss_dssp             GGGSSSSSHHHHHHHHHHHHTCCSG---GGHH-----HHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCHH---HH
T ss_pred             HHHcCCCCHHHHHHHHHHHHcCChH---HHHH-----HHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhcc---cc
Confidence            3557888888888888888776422   2222     24677999999988 99999999999999886665432   24


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF  161 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  161 (454)
                      ++++.+..+|.++++.++..|+.+|..++...+.........+.+..++..+ .+.++..+...+.++..++..    ..
T Consensus       160 ~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~----~~  234 (591)
T 2vgl_B          160 GFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPK----DD  234 (591)
T ss_dssp             HHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCC----SH
T ss_pred             cHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCC----Ch
Confidence            6789999999999999999999999999976653210000011255666666 456777888888888777633    22


Q ss_pred             hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhcc
Q 012897          162 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG  238 (454)
Q Consensus       162 ~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  238 (454)
                      .....+++.+..++++.++.|+..|++++..+...   +++....+. ..+.+.|+.++ ++++.+|..++.+|+.++..
T Consensus       235 ~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~  312 (591)
T 2vgl_B          235 REAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLL-SGEPEVQYVALRNINLIVQK  312 (591)
T ss_dssp             HHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHh-cCCccHHHHHHHHHHHHHHh
Confidence            33467888888999999999999999999998742   233333333 35566777665 47889999999999999876


Q ss_pred             CccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHH
Q 012897          239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAIS  318 (454)
Q Consensus       239 ~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~  318 (454)
                      .+.....     .+..+. .+.++ +..+|..+++++.+++...  ++.     .+++.|...+.+.+.+++..++++|+
T Consensus       313 ~p~~~~~-----~~~~~~-~~~~d-~~~Ir~~al~~L~~l~~~~--nv~-----~iv~~L~~~l~~~d~~~r~~~v~aI~  378 (591)
T 2vgl_B          313 RPEILKQ-----EIKVFF-VKYND-PIYVKLEKLDIMIRLASQA--NIA-----QVLAELKEYATEVDVDFVRKAVRAIG  378 (591)
T ss_dssp             CCSTTTT-----CTTTTS-CCTTS-CHHHHHHHHHHHHHTCCSS--THH-----HHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred             ChHHHHH-----HHHhhe-eccCC-hHHHHHHHHHHHHHHCChh--hHH-----HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            5533221     112121 22244 5789999999999887542  222     24566777787788899999999999


Q ss_pred             HhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhh
Q 012897          319 NATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGE  368 (454)
Q Consensus       319 ~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~  368 (454)
                      +++....+. .     ..+++.|++++......++..++.++..+++..+
T Consensus       379 ~la~~~~~~-~-----~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p  422 (591)
T 2vgl_B          379 RCAIKVEQS-A-----ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYP  422 (591)
T ss_dssp             HHHTTCHHH-H-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHhChhH-H-----HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCc
Confidence            998864322 1     2257888888888888888888888888876543

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.74  E-value=2.2e-16  Score=156.11  Aligned_cols=326  Identities=15%  Similarity=0.112  Sum_probs=237.6

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      ++.++++|+.++..+..++..++... ++..     .-+++.+.+-|++++ +.+|..|+.+|+++..  ++....    
T Consensus        55 i~l~~s~~~~~Krl~yl~l~~~~~~~-~e~~-----~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~~--~~~~~~----  121 (591)
T 2vgl_B           55 VNCMQTDNLELKKLVYLYLMNYAKSQ-PDMA-----IMAVNSFVKDCEDPN-PLIRALAVRTMGCIRV--DKITEY----  121 (591)
T ss_dssp             HHTTSSSCHHHHHHHHHHHHHHHHHS-HHHH-----HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCCS--GGGHHH----
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHcccC-chHH-----HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCCh--HHHHHH----
Confidence            45678888888888888888776542 1111     225678888889888 9999999999998863  444433    


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCC-C
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP-P  160 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~  160 (454)
                       +++.+.+++.++++.+|..|+.++.+++...+...   ...+.++.+..++ .++++.++..|+++|..++...+.. .
T Consensus       122 -l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~~~~~~~  196 (591)
T 2vgl_B          122 -LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---EDQGFLDSLRDLI-ADSNPMVVANAVAALSEISESHPNSNL  196 (591)
T ss_dssp             -HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred             -HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---ccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhhCCCccc
Confidence             36789999999999999999999999986555422   1234577888888 6889999999999999999876433 2


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhcc--
Q 012897          161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG--  238 (454)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--  238 (454)
                      .......++.++..+.+.++..+...+.++..++...+...     ..+++.+..++++.++.++..|++++..+...  
T Consensus       197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~  271 (591)
T 2vgl_B          197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMKFLELLP  271 (591)
T ss_dssp             CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCC
T ss_pred             hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccC
Confidence            33345667788888888899999999999998886544332     25677888899999999999999999998752  


Q ss_pred             -CccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHH
Q 012897          239 -DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAI  317 (454)
Q Consensus       239 -~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL  317 (454)
                       ++...+.+. ..+.+.|+.++ ++ ++.+|..|+.++..+....++...    . .+..+. .+.+++..+|..+++.+
T Consensus       272 ~~~~~~~~~~-~~~~~~L~~L~-~~-d~~vr~~aL~~l~~i~~~~p~~~~----~-~~~~~~-~~~~d~~~Ir~~al~~L  342 (591)
T 2vgl_B          272 KDSDYYNMLL-KKLAPPLVTLL-SG-EPEVQYVALRNINLIVQKRPEILK----Q-EIKVFF-VKYNDPIYVKLEKLDIM  342 (591)
T ss_dssp             BTTBSHHHHH-HHTHHHHHHHT-TS-CHHHHHHHHHHHHHHHHHCCSTTT----T-CTTTTS-CCTTSCHHHHHHHHHHH
T ss_pred             CCHHHHHHHH-HHHHHHHHHHh-cC-CccHHHHHHHHHHHHHHhChHHHH----H-HHHhhe-eccCChHHHHHHHHHHH
Confidence             233333222 24556677665 46 889999999999999864333211    1 112121 12234588999999999


Q ss_pred             HHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 012897          318 SNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG  367 (454)
Q Consensus       318 ~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~  367 (454)
                      .+++...+.+   .     +++.|..++.+.+++++..+++++..+....
T Consensus       343 ~~l~~~~nv~---~-----iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~  384 (591)
T 2vgl_B          343 IRLASQANIA---Q-----VLAELKEYATEVDVDFVRKAVRAIGRCAIKV  384 (591)
T ss_dssp             HHTCCSSTHH---H-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHCChhhHH---H-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC
Confidence            9998754422   2     4666778888889999999999998887643

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.71  E-value=1.8e-14  Score=137.13  Aligned_cols=402  Identities=14%  Similarity=0.153  Sum_probs=282.5

Q ss_pred             CCHHHHHHHHHHHHHHhccCCCC----------------cHHHHH-HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCC
Q 012897            8 DDSSLQLEATTQFRKLLSIERSP----------------PIEEVI-QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG   70 (454)
Q Consensus         8 ~d~~~~~~a~~~L~~l~~~~~~~----------------~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~   70 (454)
                      +|.++...++..|.++++....+                ..+.++ +.+.++.|+.+|++.+ -.+|..++++|..++..
T Consensus        74 ~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~vR~~alqlL~~L~~~  152 (651)
T 3grl_A           74 SDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHVRWPGVKLLTSLLKQ  152 (651)
T ss_dssp             TCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHHHHHHHHHHHHHHhc
Confidence            68899999999999888754221                112232 4577999999999988 89999999999999986


Q ss_pred             Cch-hhHHHHhC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhh---hhhHHHHH
Q 012897           71 TSE-NTKVVIDH-GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA---KLSMLRNA  145 (454)
Q Consensus        71 ~~~-~~~~~~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~---~~~~~~~a  145 (454)
                      .++ ..+.+... ++++.|+.+|+++.+.+|..++..|.+++.+++..++.+.-.|+++.|+.++..+.   ...+...+
T Consensus       153 r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DC  232 (651)
T 3grl_A          153 LGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDC  232 (651)
T ss_dssp             SHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHH
T ss_pred             CcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHH
Confidence            666 77777754 99999999999999999999999999999999999999998999999999995432   23688899


Q ss_pred             HHHHHhhcCCCC-CCChhhhhchHHHHHHhhcCCChh------HHHH---HHHHHHHhccC------ChHHHHHHHHhCc
Q 012897          146 TWTLSNFCRGKP-QPPFDQVRPALPALAQLVHSNDEE------VLTD---ACWALSYLSDG------TNDKIQAVIEAGV  209 (454)
Q Consensus       146 ~~~L~~l~~~~~-~~~~~~~~~~l~~l~~ll~~~~~~------v~~~---a~~~L~~l~~~------~~~~~~~~~~~~~  209 (454)
                      +.++.+|.++++ +.......+++|.|..++..+.+.      ...+   ++.++.-++..      ...+...+.+.|+
T Consensus       233 L~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~  312 (651)
T 3grl_A          233 LILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGL  312 (651)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCC
Confidence            999999999863 344445578999999998754321      3333   45555555543      2245567888999


Q ss_pred             HHHHHHhcCCC--CCcchhhHHHHHhHhhccCccchhhhhccC---------ChHHHHHhhcCCcchhHHHHHHHHHHHH
Q 012897          210 CPRLVELLGHP--SPSVLIPALRTVGNIVTGDDFQTQCIITYG---------ALPYLLGLLTHSHKKSIKKEACWTISNI  278 (454)
Q Consensus       210 i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---------~l~~L~~~L~~~~~~~v~~~a~~~L~nl  278 (454)
                      ++.++.++..+  ...++..|+.+++.++++++.....+.+..         ++..|+.++.+.....+|..|+.++..+
T Consensus       313 l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay  392 (651)
T 3grl_A          313 LQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCF  392 (651)
T ss_dssp             HHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence            99999998765  467889999999999998886555544321         3444555566654678999999999999


Q ss_pred             hcCCHHHHHHHHhC----------CCh---HHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHH--------c--
Q 012897          279 TAGNRDQIQAVIDA----------GLV---GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVR--------E--  335 (454)
Q Consensus       279 ~~~~~~~~~~l~~~----------~~i---~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~--------~--  335 (454)
                      ..++++....++..          +.+   ..+..-+-+.|+--...|+.++.++.... ++....+.+        +  
T Consensus       393 ~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n-~~~K~~~l~v~l~~~~ge~~  471 (651)
T 3grl_A          393 LYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQEN-ATQKEQLLRVQLATSIGNPP  471 (651)
T ss_dssp             HTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTC-HHHHHHHTTCBCCCCTTCCC
T ss_pred             HhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCC-HHHHHHHHhCcccccCCCCc
Confidence            99887665555532          111   12334444456655566888888888753 333333222        1  


Q ss_pred             -CCcHHHhhccC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHh-cC-C--CHHHHH
Q 012897          336 -GCIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ-SH-D--NNEIYE  409 (454)
Q Consensus       336 -~~i~~L~~~l~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~-~~-~--~~~v~~  409 (454)
                       ..++.+...+. ..++.++...+..|...+..+...            ....+.+...++.|.... ++ .  +.-|+-
T Consensus       472 vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~A------------V~dFL~~~s~l~~L~~~i~~~~~~~~~lvqG  539 (651)
T 3grl_A          472 VSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPIA------------VTHFLHNSANVPFLTGQIAENLGEEEQLVQG  539 (651)
T ss_dssp             CBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHHH------------HHHHHHSTTHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             ccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChHH------------HHHHHcCCchHHHHHHHHHhccCcchHHHHH
Confidence             11444455554 345677766677776666554432            455666666677777554 32 2  234677


Q ss_pred             HHHHHHHHhcCcCC
Q 012897          410 KAVKILETYWLEED  423 (454)
Q Consensus       410 ~a~~~l~~~~~~~~  423 (454)
                      .+.-++.-++....
T Consensus       540 L~a~LLGi~yef~~  553 (651)
T 3grl_A          540 LCALLLGISIYFND  553 (651)
T ss_dssp             HHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHhhccC
Confidence            88888777666444

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.71  E-value=8.8e-16  Score=137.42  Aligned_cols=259  Identities=14%  Similarity=0.118  Sum_probs=201.8

Q ss_pred             HHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh
Q 012897           35 VIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP  114 (454)
Q Consensus        35 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~  114 (454)
                      ....+.++.|+..|.+++ +.+|..|+++|+++..           .+.++.|+.++.++++.+|..++++|+.+.....
T Consensus        19 ~~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~   86 (280)
T 1oyz_A           19 QCKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK   86 (280)
T ss_dssp             HHHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT
T ss_pred             HHHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc
Confidence            345678999999999988 9999999999999873           2357889999999999999999999999864322


Q ss_pred             hhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 012897          115 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS  194 (454)
Q Consensus       115 ~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~  194 (454)
                      ... .     .++.+...+..++++.++..++++|..+....+    ......++.+..++.++++.++..++++|+++.
T Consensus        87 ~~~-~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~  156 (280)
T 1oyz_A           87 CED-N-----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN  156 (280)
T ss_dssp             THH-H-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred             cch-H-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC
Confidence            211 1     123333333367789999999999999974321    123467899999999999999999999999875


Q ss_pred             cCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHH
Q 012897          195 DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWT  274 (454)
Q Consensus       195 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~  274 (454)
                      .           .+.++.|+.++.++++.+|..++++|+.+....+         ..++.|...+.++ ++.+|..|+++
T Consensus       157 ~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~a  215 (280)
T 1oyz_A          157 D-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIG  215 (280)
T ss_dssp             -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred             C-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHH
Confidence            3           2578999999999999999999999999853222         4567899999988 99999999999


Q ss_pred             HHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCC-CCHHHH
Q 012897          275 ISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC-PDPRIV  353 (454)
Q Consensus       275 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~  353 (454)
                      |+++..           ...++.|+..+.++  +++..++++|+.+..   +         .+++.|..++.. .+++++
T Consensus       216 L~~~~~-----------~~~~~~L~~~l~d~--~vr~~a~~aL~~i~~---~---------~~~~~L~~~l~~~~~~~~~  270 (280)
T 1oyz_A          216 LSYRKD-----------KRVLSVLCDELKKN--TVYDDIIEAAGELGD---K---------TLLPVLDTMLYKFDDNEII  270 (280)
T ss_dssp             HHHTTC-----------GGGHHHHHHHHTSS--SCCHHHHHHHHHHCC---G---------GGHHHHHHHHTTSSCCHHH
T ss_pred             HHHhCC-----------HhhHHHHHHHhcCc--cHHHHHHHHHHhcCc---h---------hhhHHHHHHHhcCCCcHHH
Confidence            998862           34788888888764  499999999999854   1         357788888864 567777


Q ss_pred             HHHHHHHH
Q 012897          354 TVCLEGLE  361 (454)
Q Consensus       354 ~~al~~L~  361 (454)
                      ..++..|.
T Consensus       271 ~~~~~~l~  278 (280)
T 1oyz_A          271 TSAIDKLK  278 (280)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            77776664

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.69  E-value=1.2e-14  Score=138.37  Aligned_cols=353  Identities=15%  Similarity=0.136  Sum_probs=258.1

Q ss_pred             CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCC-CChhHHHHHHHHHHHhcCCCch--------------
Q 012897            9 DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-DYPQLQFEAAWALTNIASGTSE--------------   73 (454)
Q Consensus         9 d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~~l~~~~~~--------------   73 (454)
                      -.+=|..|+..|+.++...  +   ..+..++++.|+..|+.. ++.++...++.+|.++....++              
T Consensus        35 l~eDRR~Av~~Lk~~sk~y--~---~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~  109 (651)
T 3grl_A           35 LLDDRRNAVRALKSLSKKY--R---LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDL  109 (651)
T ss_dssp             SHHHHHHHHHHHHHTTTTT--T---THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CH
T ss_pred             chhHHHHHHHHHHHHHHHh--H---HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHH
Confidence            3567889999999987553  1   134456799999999875 3478889999999887663322              


Q ss_pred             ---hhHHH-HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh-hHHHHHhc-CChHHHHHHhchhhhhhHHHHHHH
Q 012897           74 ---NTKVV-IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR-CRDLVLSQ-GALIPLLAQLNERAKLSMLRNATW  147 (454)
Q Consensus        74 ---~~~~~-~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~-~~i~~l~~~l~~~~~~~~~~~a~~  147 (454)
                         ..+.+ -+.+.++.|+.+|++.+..+|..++.+|..++...+. .++.+... ++++.|+.+| .+..+.+|..++.
T Consensus       110 ~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL-~d~rE~iRneall  188 (651)
T 3grl_A          110 GSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL-ADSREVIRNDGVL  188 (651)
T ss_dssp             HHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG-GCSSHHHHHHHHH
T ss_pred             HHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH-hCchHHHHHHHHH
Confidence               12233 3468899999999999999999999999999987776 67777754 8899999999 7778899999999


Q ss_pred             HHHhhcCCCCCC-ChhhhhchHHHHHHhhcCCCh----hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCC
Q 012897          148 TLSNFCRGKPQP-PFDQVRPALPALAQLVHSNDE----EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP  222 (454)
Q Consensus       148 ~L~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~----~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~  222 (454)
                      .|..|+.+.+.. +.....++++.|+.+++....    .+...++.++.++.+.++.+...+.+.+.++.|..++..++.
T Consensus       189 LL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~  268 (651)
T 3grl_A          189 LLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDE  268 (651)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSC
T ss_pred             HHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCcc
Confidence            999999987443 344557999999999987544    789999999999999998888889999999999999975432


Q ss_pred             c------chhh---HHHHHhHhhccCc------cchhhhhccCChHHHHHhhcCCc-chhHHHHHHHHHHHHhcCCHHHH
Q 012897          223 S------VLIP---ALRTVGNIVTGDD------FQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWTISNITAGNRDQI  286 (454)
Q Consensus       223 ~------v~~~---a~~~L~~l~~~~~------~~~~~~~~~~~l~~L~~~L~~~~-~~~v~~~a~~~L~nl~~~~~~~~  286 (454)
                      .      ...+   ++.++..++....      .....+.+.|++..+++++..+. ...++..|..+++.+.++++...
T Consensus       269 ~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q  348 (651)
T 3grl_A          269 NSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQ  348 (651)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            2      1122   5666666665422      23456778899999999987542 45799999999999999998887


Q ss_pred             HHHHhCC---------ChHHHHHHhhhc-chhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcH--------------HHh
Q 012897          287 QAVIDAG---------LVGPLVNLLQNA-EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIK--------------PLC  342 (454)
Q Consensus       287 ~~l~~~~---------~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~--------------~L~  342 (454)
                      ..+.+..         ++..|+.++.+. ..++|..|+.++..+...... ....+... .++              .|.
T Consensus       349 ~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~-~Q~~i~~~-llp~~~~~~~~~~s~g~ll~  426 (651)
T 3grl_A          349 DYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQK-GQGEIVST-LLPSTIDATGNTVSAGQLLC  426 (651)
T ss_dssp             HHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHT-TSSCCCCCTTSSSCHHHHHH
T ss_pred             HHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHH-HHHHHHHh-cCCcccccCCCCCCcchhhh
Confidence            7776533         233344445443 678999999999999887432 22233321 111              133


Q ss_pred             hccCCCCHHHHHHHHHHHHHHHHhhhh
Q 012897          343 DLFVCPDPRIVTVCLEGLENILKVGEA  369 (454)
Q Consensus       343 ~~l~~~~~~v~~~al~~L~~l~~~~~~  369 (454)
                      ..+-+.|+.-.-.+.-+|.+++.....
T Consensus       427 ~~l~s~d~~~~wfAavil~hll~~n~~  453 (651)
T 3grl_A          427 GGLFSTDSLSNWCAAVALAHALQENAT  453 (651)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHTTCHH
T ss_pred             hhhccCchHHHHHHHHHHHHHHcCCHH
Confidence            333345664444466667777765543

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.67  E-value=3.3e-15  Score=133.63  Aligned_cols=248  Identities=15%  Similarity=0.106  Sum_probs=192.6

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      ++.|.++|+.+|..|+++|.++..            .+.++.|+.++.+++ +.+|..|+++|+.+.... ....     
T Consensus        29 ~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~-~~~~-----   89 (280)
T 1oyz_A           29 FRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICK-KCED-----   89 (280)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCT-TTHH-----
T ss_pred             HHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhcccc-ccch-----
Confidence            467889999999999999998752            135888999999998 999999999999987522 2111     


Q ss_pred             CChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897           82 GAVPIFVK-LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP  160 (454)
Q Consensus        82 g~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (454)
                      .+++.|.. ++.++++.+|..++++|+++....+.....     .++.++..+ .++++.++..++++|..+...     
T Consensus        90 ~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~-----~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~~-----  158 (280)
T 1oyz_A           90 NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPK-----IVEQSQITA-FDKSTNVRRATAFAISVINDK-----  158 (280)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHHT-TCSCHHHHHHHHHHHHTC--------
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHH-----HHHHHHHHh-hCCCHHHHHHHHHHHHhcCCH-----
Confidence            12344442 457789999999999999997433322222     367788888 778899999999999987642     


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897          161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD  240 (454)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  240 (454)
                           ..++.|..++.++++.++..++++|+.+....+         ..++.+..++.++++.+|..|+++|+.+..   
T Consensus       159 -----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~---  221 (280)
T 1oyz_A          159 -----ATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSYRKD---  221 (280)
T ss_dssp             -----CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHTTC---
T ss_pred             -----HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHhCC---
Confidence                 478999999999999999999999999854332         346788889999999999999999998862   


Q ss_pred             cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhh-cchhhHHHHHHHHH
Q 012897          241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN-AEFDIKKEAAWAIS  318 (454)
Q Consensus       241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~  318 (454)
                              ...++.|...+.++ +  +|..++++|+.+..           ...++.|..++.+ .++++...+..++.
T Consensus       222 --------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~-----------~~~~~~L~~~l~~~~~~~~~~~~~~~l~  278 (280)
T 1oyz_A          222 --------KRVLSVLCDELKKN-T--VYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSAIDKLK  278 (280)
T ss_dssp             --------GGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             --------HhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc-----------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence                    25678899999876 4  89999999998853           2468889998876 47778877777764

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.66  E-value=6.2e-15  Score=153.25  Aligned_cols=344  Identities=14%  Similarity=0.210  Sum_probs=238.4

Q ss_pred             CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc-hhhHHHHhCCChHH
Q 012897            8 DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS-ENTKVVIDHGAVPI   86 (454)
Q Consensus         8 ~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~   86 (454)
                      +++.++..|..+|..++...+....     ..+++.+.+.+.+++ +.+|..|+++++.++.+.. +.....+. .+++.
T Consensus       343 ~~~~~r~~a~~~L~~l~~~~~~~~~-----~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~  415 (861)
T 2bpt_A          343 DDWNVSMSAGACLQLFAQNCGNHIL-----EPVLEFVEQNITADN-WRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPS  415 (861)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHGGGGH-----HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHH
T ss_pred             ccCcHHHHHHHHHHHHHHHccHhHH-----HHHHHHHHHHcCCCC-hhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHH
Confidence            3468899999999888765321111     135677778888888 8999999999999997532 33333332 47889


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCChhh---HHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCC----CC
Q 012897           87 FVKLLASPSDDVREQAVWALGNVAGDSPRC---RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP----QP  159 (454)
Q Consensus        87 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~----~~  159 (454)
                      ++..+.++++.+|..++++++.++......   ...  -...++.++..+ .+. +.++..+++++.+++....    ..
T Consensus       416 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~l~~l~~~l-~~~-~~v~~~a~~al~~l~~~~~~~~~~~  491 (861)
T 2bpt_A          416 ILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH--LPGVVQACLIGL-QDH-PKVATNCSWTIINLVEQLAEATPSP  491 (861)
T ss_dssp             HHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT--HHHHHHHHHHHH-TSC-HHHHHHHHHHHHHHHHHHSSSSSCG
T ss_pred             HHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH--HHHHHHHHHHHh-ccC-hHHHHHHHHHHHHHHHhcccccchh
Confidence            999999999999999999999998432110   000  112366777777 333 7899999999999986532    11


Q ss_pred             ChhhhhchHHHHHHhhcCCC--hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC---------------CCC
Q 012897          160 PFDQVRPALPALAQLVHSND--EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH---------------PSP  222 (454)
Q Consensus       160 ~~~~~~~~l~~l~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~---------------~~~  222 (454)
                      -......+++.+...+.+.+  +.++..++.++..++...+......+. .+++.++..+..               ...
T Consensus       492 l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~  570 (861)
T 2bpt_A          492 IYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQ  570 (861)
T ss_dssp             GGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHH
Confidence            22344677888889888544  789999999999998655443333333 355556555532               134


Q ss_pred             cchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcch-hHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHH
Q 012897          223 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK-SIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNL  301 (454)
Q Consensus       223 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~-~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l  301 (454)
                      .++..++.+|+.++........... ..+++.++..+.+. +. .++..++++++.++..........+ ..+++.+...
T Consensus       571 ~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~  647 (861)
T 2bpt_A          571 ELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKK-DSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKA  647 (861)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHH
Confidence            5677899999999876543322222 25677888888877 56 8999999999998863222222333 2478889999


Q ss_pred             hhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCC--HHHHHHHHHHHHHHHHhhh
Q 012897          302 LQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPD--PRIVTVCLEGLENILKVGE  368 (454)
Q Consensus       302 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~--~~v~~~al~~L~~l~~~~~  368 (454)
                      ++.+++.++..++.++..++.........++  ..+++.+...+.+++  ++++..++.++..++....
T Consensus       648 l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~  714 (861)
T 2bpt_A          648 LNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG  714 (861)
T ss_dssp             HHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG
T ss_pred             hccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhh
Confidence            9878889999999999998775443333332  236777778887654  8899999999999988654

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.65  E-value=3.4e-15  Score=148.11  Aligned_cols=355  Identities=15%  Similarity=0.102  Sum_probs=251.1

Q ss_pred             ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 012897            3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG   82 (454)
Q Consensus         3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g   82 (454)
                      +.|+++|+.+|..|+++|.++...       .+. ..+++.+.+++.+++ +.+|..|+.++.++....++...     +
T Consensus       114 kDL~~~n~~vr~lAL~~L~~i~~~-------~~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v~-----~  179 (618)
T 1w63_A          114 NDLNHSTQFVQGLALCTLGCMGSS-------EMC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELME-----M  179 (618)
T ss_dssp             HHHSCSSSHHHHHHHHHHHHHCCH-------HHH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGGG-----G
T ss_pred             HhcCCCCHhHHHHHHHHHHhcCCH-------HHH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHHH-----H
Confidence            456788888998899888888632       122 346888999999998 99999999999999986665432     6


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhch--------------hhhhhHHHHHHHH
Q 012897           83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--------------RAKLSMLRNATWT  148 (454)
Q Consensus        83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--------------~~~~~~~~~a~~~  148 (454)
                      +++.+..++.+.++.++..|+.+|..++..++.....+  ...++.++.+|.+              ..++-.+..++.+
T Consensus       180 ~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~  257 (618)
T 1w63_A          180 FLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRL  257 (618)
T ss_dssp             GGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHH
Confidence            78888899999999999999999999987665432222  2467888877743              2467888889999


Q ss_pred             HHhhcCCCCCCChhhhhchHHHHHHhhc------CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCC
Q 012897          149 LSNFCRGKPQPPFDQVRPALPALAQLVH------SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP  222 (454)
Q Consensus       149 L~~l~~~~~~~~~~~~~~~l~~l~~ll~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~  222 (454)
                      |..++...+    .....+.+.|..++.      +.+..+...+++++..+... +.    +.. .++..|..++.++++
T Consensus       258 L~~l~~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~----l~~-~a~~~L~~~L~~~d~  327 (618)
T 1w63_A          258 LRILGRNDD----DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE-SG----LRV-LAINILGRFLLNNDK  327 (618)
T ss_dssp             HHHHTTTCH----HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HH----HHH-HHHHHHHHHHTCSST
T ss_pred             HHHhCCCCH----HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC-HH----HHH-HHHHHHHHHHhCCCC
Confidence            999986532    122344555555543      23567899999999887542 21    111 356778888999999


Q ss_pred             cchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHh
Q 012897          223 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLL  302 (454)
Q Consensus       223 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll  302 (454)
                      .+|..|+.+|+.++...+..    +. .....++.++.++ +..+|..|..++..++....  ...     +++.|...+
T Consensus       328 ~vr~~aL~~L~~i~~~~p~~----~~-~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l  394 (618)
T 1w63_A          328 NIRYVALTSLLKTVQTDHNA----VQ-RHRSTIVDCLKDL-DVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFL  394 (618)
T ss_dssp             TTHHHHHHHHHHHHHHHHHH----HG-GGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhhCHHH----HH-HHHHHHHHHccCC-ChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHH
Confidence            99999999999999754422    22 3567888999988 99999999999999987422  112     356788888


Q ss_pred             hhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccH
Q 012897          303 QNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQ  382 (454)
Q Consensus       303 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~  382 (454)
                      .+.+.+++..+..+|+.++....+....      +++.|+++++.....+...++..+..++...+..+           
T Consensus       395 ~~~d~e~r~~~v~~I~~la~k~~~~~~~------~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~-----------  457 (618)
T 1w63_A          395 DSCEPEFKADCASGIFLAAEKYAPSKRW------HIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMH-----------  457 (618)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHSSCCCHHH------HHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTH-----------
T ss_pred             HhCCHHHHHHHHHHHHHHHHHhCccHHH------HHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHH-----------
Confidence            8889999999999999998853222211      36777777776666666666777777776543321           


Q ss_pred             HHHHHHHhccHHHHHHHhc--CCCHHHHHHHHHHHHHhcC
Q 012897          383 YAQLVEEAEGLEKIENLQS--HDNNEIYEKAVKILETYWL  420 (454)
Q Consensus       383 ~~~~l~~~g~~~~l~~l~~--~~~~~v~~~a~~~l~~~~~  420 (454)
                       ...      +..|..+..  ...+.+...+.|++.+|-+
T Consensus       458 -~~~------v~~L~~~l~~~~~~~~~~~~~~wilGEy~~  490 (618)
T 1w63_A          458 -AYT------VQRLYKAILGDYSQQPLVQVAAWCIGEYGD  490 (618)
T ss_dssp             -HHH------HHHHHHHHHHCCSCSHHHHHHHHHHHHHHH
T ss_pred             -HHH------HHHHHHHHhcccccHHHHHHHHHHHhhhHH
Confidence             111      222322222  1334455678999998864

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.64  E-value=9.5e-15  Score=152.13  Aligned_cols=269  Identities=19%  Similarity=0.197  Sum_probs=190.4

Q ss_pred             ccccCC--CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897            3 AGVWSD--DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID   80 (454)
Q Consensus         3 ~~L~s~--d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (454)
                      +.++++  ++.+|..|++++..++...............+++.+...+.+.+ ++++..++++|..++...+......+.
T Consensus       179 ~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~  257 (876)
T 1qgr_A          179 QGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQYMETYMG  257 (876)
T ss_dssp             HHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGGCHHHHT
T ss_pred             HhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            345555  68999999999999876421100001111235777888887777 899999999999999755555444455


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh---------------------hHHHHHhcCChHHHHHHhch----
Q 012897           81 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR---------------------CRDLVLSQGALIPLLAQLNE----  135 (454)
Q Consensus        81 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~---------------------~~~~~~~~~~i~~l~~~l~~----  135 (454)
                      ..+++.++..+.+.++.++..++.++..++.....                     ...... ...++.+++.+..    
T Consensus       258 ~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d  336 (876)
T 1qgr_A          258 PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDEN  336 (876)
T ss_dssp             TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhccccc
Confidence            57889999988888999999999999888743110                     000000 1235556666632    


Q ss_pred             --hhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHH
Q 012897          136 --RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPR  212 (454)
Q Consensus       136 --~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~  212 (454)
                        +.+..++..+..++..++...+   ......+++.+...+.+.++.++..++++++.++.... ....... ..+++.
T Consensus       337 ~~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~  412 (876)
T 1qgr_A          337 DDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPT  412 (876)
T ss_dssp             CCTTCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHHHCc---HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHH
Confidence              2345788899999988876532   12345678888888889999999999999999997654 3333333 368899


Q ss_pred             HHHhcCCCCCcchhhHHHHHhHhhccCccch--hhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897          213 LVELLGHPSPSVLIPALRTVGNIVTGDDFQT--QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  280 (454)
Q Consensus       213 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~  280 (454)
                      ++..+.++++.+|..|++++++++...+...  ... -..+++.++..+.++  +.++..+++++.+++.
T Consensus       413 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~  479 (876)
T 1qgr_A          413 LIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSAE--PRVASNVCWAFSSLAE  479 (876)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHH
Confidence            9999999999999999999999997644321  111 125667778887653  7799999999999885

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.63  E-value=2.7e-15  Score=156.00  Aligned_cols=396  Identities=12%  Similarity=0.125  Sum_probs=262.3

Q ss_pred             ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh-HHHHhC
Q 012897            3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT-KVVIDH   81 (454)
Q Consensus         3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~   81 (454)
                      +.+++.++.+|..|+.++..++.+.........+ ..+++.++..+.+++ +.+|..++++++.++....... ..-.-.
T Consensus       376 ~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~~  453 (861)
T 2bpt_A          376 QNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDPQQHLP  453 (861)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCTTTTHH
T ss_pred             HHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCCHHHHH
Confidence            3467889999999999999998663112222222 247888999999988 9999999999999986211100 000112


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-----hhhHHHHHhcCChHHHHHHhch-hhhhhHHHHHHHHHHhhcCC
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDS-----PRCRDLVLSQGALIPLLAQLNE-RAKLSMLRNATWTLSNFCRG  155 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-----~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~a~~~L~~l~~~  155 (454)
                      .+++.++..+.++ +.++..+++++.+++...     ......+  ..+++.++..+.. +.+..++..++.++..++..
T Consensus       454 ~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~  530 (861)
T 2bpt_A          454 GVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTMVEY  530 (861)
T ss_dssp             HHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHH
Confidence            4578888888776 899999999999987421     1111111  1235667777742 33478999999999999877


Q ss_pred             CCCCChhhhhchHHHHHHhhcCC---------------ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC
Q 012897          156 KPQPPFDQVRPALPALAQLVHSN---------------DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP  220 (454)
Q Consensus       156 ~~~~~~~~~~~~l~~l~~ll~~~---------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~  220 (454)
                      .+.........++|.++..+...               ...++..++.+|.+++............ .+++.++..+.+.
T Consensus       531 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~  609 (861)
T 2bpt_A          531 ATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFRLLEKK  609 (861)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHHHHST
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHccC
Confidence            54433344566777777766531               3457788999999888654432222222 5677778888777


Q ss_pred             CC-cchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHH
Q 012897          221 SP-SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLV  299 (454)
Q Consensus       221 ~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~  299 (454)
                      +. .++..++.+++.++..........+. .+++.+...+.++ ++.+|..++.+++.++........... ..+++.++
T Consensus       610 ~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~l~~~l~  686 (861)
T 2bpt_A          610 DSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS-DAMMNVLA  686 (861)
T ss_dssp             TGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH-HHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchH-HHHHHHHH
Confidence            66 89999999999998654433222222 4788888888777 888999999999999864333333333 35677888


Q ss_pred             HHhhhcc--hhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCC-----------HHHHHHHHHHHHHHHHh
Q 012897          300 NLLQNAE--FDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPD-----------PRIVTVCLEGLENILKV  366 (454)
Q Consensus       300 ~ll~~~~--~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~-----------~~v~~~al~~L~~l~~~  366 (454)
                      +.+.+.+  +++|..++.+++.++.........++-  .+++.+...++...           ..++..++.++..++..
T Consensus       687 ~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~--~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~  764 (861)
T 2bpt_A          687 QMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN--DIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAG  764 (861)
T ss_dssp             HHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8887754  889999999999998754434444432  35777777776431           35788888998888865


Q ss_pred             hhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCC----CHHHHHHHHHHHHHhcC
Q 012897          367 GEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHD----NNEIYEKAVKILETYWL  420 (454)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~----~~~v~~~a~~~l~~~~~  420 (454)
                      ......      .   +...+.  ..++.+.....+.    +..++..|..++..+..
T Consensus       765 l~~~~~------~---~~~~~~--~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~  811 (861)
T 2bpt_A          765 LHDKPE------A---LFPYVG--TIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA  811 (861)
T ss_dssp             TTTCHH------H---HGGGHH--HHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred             HccCHH------H---HHHHHH--HHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHH
Confidence            331000      0   111111  1234454554442    78999999998888754

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.63  E-value=2.8e-15  Score=144.28  Aligned_cols=386  Identities=13%  Similarity=0.075  Sum_probs=263.3

Q ss_pred             ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC-ChhHHHHHHHHHHHhcCCCchhhHH----
Q 012897            3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTKV----   77 (454)
Q Consensus         3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~----   77 (454)
                      ..+.+.|+++|..|-..|.++....         ..+.+..|..++.+++ ++.+|..|+..|.++..........    
T Consensus         8 ~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~   78 (462)
T 1ibr_B            8 EKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ   78 (462)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHh
Confidence            3456889999999999998865421         1234667777777652 4899999999999987633111100    


Q ss_pred             -------HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhh--hhhHHHHHHHH
Q 012897           78 -------VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA--KLSMLRNATWT  148 (454)
Q Consensus        78 -------~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--~~~~~~~a~~~  148 (454)
                             -....+-..++..+.++++.+ ..++.+++.++.......   .-.+.++.++..+ .+.  ++.++..++.+
T Consensus        79 ~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l-~~~~~~~~~r~~al~~  153 (462)
T 1ibr_B           79 RWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANV-TNPNSTEHMKESTLEA  153 (462)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHH-HCTTCCHHHHHHHHHH
T ss_pred             hhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHh-ccCCCCHHHHHHHHHH
Confidence                   011123456777888877778 888899998874321100   0124577888888 445  78899999999


Q ss_pred             HHhhcCCC-CCCChhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCChHHHH-HHHHhCcHHHHHHhcCCCCCcc
Q 012897          149 LSNFCRGK-PQPPFDQVRPALPALAQLVHSN--DEEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLGHPSPSV  224 (454)
Q Consensus       149 L~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~v  224 (454)
                      |..++... +.........+++.+..++.+.  ++.++..++.++.++......... .....-+++.+...+.++++.+
T Consensus       154 l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v  233 (462)
T 1ibr_B          154 IGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRV  233 (462)
T ss_dssp             HHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHH
T ss_pred             HHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHH
Confidence            99998753 2222334466888899999887  789999999999987643221111 0111124666667778888999


Q ss_pred             hhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHH--------------------
Q 012897          225 LIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD--------------------  284 (454)
Q Consensus       225 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~--------------------  284 (454)
                      +..++.++..++...+......+...+++.++..+++. ++.++..++..+..++.....                    
T Consensus       234 r~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (462)
T 1ibr_B          234 RVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSK  312 (462)
T ss_dssp             HHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhH
Confidence            99999999999976554333233326777888888888 899999999999888753110                    


Q ss_pred             -HHHHHHhCCChHHHHHHhhh-------cchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHH
Q 012897          285 -QIQAVIDAGLVGPLVNLLQN-------AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVC  356 (454)
Q Consensus       285 -~~~~l~~~~~i~~L~~ll~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a  356 (454)
                       ..+..+ ..++|.++..+..       +++.+|..|..+|..++.........     .+++.+...+.++++.++..+
T Consensus       313 ~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~-----~~~~~l~~~l~~~~~~~r~aa  386 (462)
T 1ibr_B          313 FYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-----HVLPFIKEHIKNPDWRYRDAA  386 (462)
T ss_dssp             CHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-----HHHHHHHHHTTCSSHHHHHHH
T ss_pred             HHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhcCCChHHHHHH
Confidence             011111 2356666666643       24678999999999987754422222     357788888999999999999


Q ss_pred             HHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC
Q 012897          357 LEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEE  422 (454)
Q Consensus       357 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~  422 (454)
                      +.+|..+........           +...+  ...++.+...+.++++.|+..|.+.+.++...-
T Consensus       387 l~~l~~l~~~~~~~~-----------~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~  439 (462)
T 1ibr_B          387 VMAFGCILEGPEPSQ-----------LKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELL  439 (462)
T ss_dssp             HHHHHHTSSSSCTTT-----------TCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHhcCCcHHH-----------HHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence            999999986432110           11111  446778888889999999999999999987643

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.61  E-value=1.8e-14  Score=155.05  Aligned_cols=402  Identities=12%  Similarity=0.122  Sum_probs=265.8

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      ++.+.+.|+++|..|...|.+.+..... ..+.-....+++.+++.|.+++ +.+|..|+.+|+.++...++  ..+  .
T Consensus        12 L~~l~s~d~~~R~~A~~~L~~~l~~~~~-~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~--~~~--~   85 (1230)
T 1u6g_C           12 LEKMTSSDKDFRFMATNDLMTELQKDSI-KLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKE--YQV--E   85 (1230)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHTSSSCC-SCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCH--HHH--H
T ss_pred             HHhcCCCCHhHHHHHHHHHHHHHccccc-CCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCH--HHH--H
Confidence            4567899999999999999988755311 1111112246788999999887 99999999999999874433  111  2


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH-----HHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR-----DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  156 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-----~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  156 (454)
                      .+++.++..+.++++.+|..++.+|+.++.......     ..-.....++.++..+.++++..++..++.++..++...
T Consensus        86 ~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~  165 (1230)
T 1u6g_C           86 TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQ  165 (1230)
T ss_dssp             HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh
Confidence            357888888888889999999999999874322210     001112357888888843567899999999999998643


Q ss_pred             CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC-CCcchhhHHHHHhHh
Q 012897          157 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP-SPSVLIPALRTVGNI  235 (454)
Q Consensus       157 ~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l  235 (454)
                      +..-......+++.+...+.++++.++..++.++..++...+..   ++ ..+++.++..+.+. ++.++..++.+++.+
T Consensus       166 ~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l  241 (1230)
T 1u6g_C          166 GGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYIQCIAAI  241 (1230)
T ss_dssp             CSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence            22222345778888999999999999999999999998765432   22 25677777777544 357889999999999


Q ss_pred             hccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhh------------
Q 012897          236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQ------------  303 (454)
Q Consensus       236 ~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~------------  303 (454)
                      +...+......+ ..+++.++..+.+. ++.+|..++.++..++...++.....+ ..+++.++..+.            
T Consensus       242 ~~~~~~~~~~~l-~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~  318 (1230)
T 1u6g_C          242 SRQAGHRIGEYL-EKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDE  318 (1230)
T ss_dssp             HHHSSGGGTTSC-TTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC----------
T ss_pred             HHHhHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCccccc
Confidence            876543222222 36889999999887 889999999999988864322111111 112333332221            


Q ss_pred             -------------------------hcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHH
Q 012897          304 -------------------------NAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE  358 (454)
Q Consensus       304 -------------------------~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~  358 (454)
                                               +..+.+|..|+.++..++.........+  -..+++.+...+.+.++.++..++.
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~--~~~l~~~l~~~l~d~~~~Vr~~a~~  396 (1230)
T 1u6g_C          319 DENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF--YKTVSPALISRFKEREENVKADVFH  396 (1230)
T ss_dssp             --------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH--HTTTHHHHHSTTSCSSSHHHHHHHH
T ss_pred             ccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHcCCCchHHHHHHHH
Confidence                                     1124679999999999987543212222  2457888999998899999999999


Q ss_pred             HHHHHHHhhhhhhhccC--Ccc-----cccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 012897          359 GLENILKVGEAEKNMGT--ATA-----DVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL  420 (454)
Q Consensus       359 ~L~~l~~~~~~~~~~~~--~~~-----~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  420 (454)
                      ++..+++..........  ..|     ........+  ...++.+.+..+++++.++..+...+..+..
T Consensus       397 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~  463 (1230)
T 1u6g_C          397 AYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV--PNIVKALHKQMKEKSVKTRQCCFNMLTELVN  463 (1230)
T ss_dssp             HHHHHHHHHCCC------------CCCHHHHHHHHT--THHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccccCccccccccchHHHHHHHh--hHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence            99988874321000000  000     000011111  2234555666788888888888887776654

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.61  E-value=3.1e-14  Score=148.25  Aligned_cols=401  Identities=14%  Similarity=0.154  Sum_probs=257.1

Q ss_pred             ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh--HHHHh
Q 012897            3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT--KVVID   80 (454)
Q Consensus         3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~   80 (454)
                      +.+++.++.+|..|++++..++....+...... -..+++.++..+++++ +.+|..|+++|++++...+...  ... -
T Consensus       373 ~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~~~~-l  449 (876)
T 1qgr_A          373 EHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAAINDVY-L  449 (876)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGGTSSTTT-H
T ss_pred             HHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCchhcccHHH-H
Confidence            456788999999999999999876421222222 2457899999999988 9999999999999997433210  011 1


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh---------------hhHHHHHhcCChHHHHHHhchh--hhhhHHH
Q 012897           81 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP---------------RCRDLVLSQGALIPLLAQLNER--AKLSMLR  143 (454)
Q Consensus        81 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~---------------~~~~~~~~~~~i~~l~~~l~~~--~~~~~~~  143 (454)
                      ..+++.++..+.++ +.++..+++++.+++....               .....+  ..+++.++..+...  .+..++.
T Consensus       450 ~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~~~~~r~  526 (876)
T 1qgr_A          450 APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDGHQNNLRS  526 (876)
T ss_dssp             HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSSCSTTHHH
T ss_pred             HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCcchhhHHH
Confidence            24577888888775 8999999999999874211               011111  12456666666432  1356888


Q ss_pred             HHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcC----------C-C----hhHHHHHHHHHHHhccCCh-HHHHHHHHh
Q 012897          144 NATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS----------N-D----EEVLTDACWALSYLSDGTN-DKIQAVIEA  207 (454)
Q Consensus       144 ~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~----------~-~----~~v~~~a~~~L~~l~~~~~-~~~~~~~~~  207 (454)
                      .+..++..++...+.........+++.++..+..          . +    ++++..++.++..++.... ....... .
T Consensus       527 ~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~  605 (876)
T 1qgr_A          527 SAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS-D  605 (876)
T ss_dssp             HHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH-H
T ss_pred             HHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH-H
Confidence            8889999888776544444556677777766542          2 2    4567888999999887655 3333333 3


Q ss_pred             CcHHHHHHhcCCCC--CcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHH
Q 012897          208 GVCPRLVELLGHPS--PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ  285 (454)
Q Consensus       208 ~~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~  285 (454)
                      .+++.++.++.+..  +.++..++.+++.++..........+. .+++.+...+.+..++.+|..++++++.++......
T Consensus       606 ~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~  684 (876)
T 1qgr_A          606 VVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSN  684 (876)
T ss_dssp             HHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHh
Confidence            57788888887764  478999999999998753332222222 467788888876536789999999999998632222


Q ss_pred             HHHHHhCCChHHHHHHhhh--cchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCC----CH-------HH
Q 012897          286 IQAVIDAGLVGPLVNLLQN--AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP----DP-------RI  352 (454)
Q Consensus       286 ~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~----~~-------~v  352 (454)
                      ....+ ..+++.++..+.+  .+.+++..+++++++++.....+...++  ..+++.|...++.+    ++       .+
T Consensus       685 ~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l--~~~~~~l~~~~~~~~~~~d~~~~~~~~~~  761 (876)
T 1qgr_A          685 IIPFC-DEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYL--EVVLNTLQQASQAQVDKSDYDMVDYLNEL  761 (876)
T ss_dssp             GHHHH-HHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHTCCCCTTCHHHHHHHHHH
T ss_pred             hhhhH-HHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHhccCCCCChHHHHHHHHH
Confidence            33333 3578888888876  3678999999999999763322322222  12456666666543    22       67


Q ss_pred             HHHHHHHHHHHHHhhhhhhh--ccCCcccccHHHHHHHHhccHHHHHHHhcCC--CHHHHHHHHHHHHHhcC
Q 012897          353 VTVCLEGLENILKVGEAEKN--MGTATADVNQYAQLVEEAEGLEKIENLQSHD--NNEIYEKAVKILETYWL  420 (454)
Q Consensus       353 ~~~al~~L~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~--~~~v~~~a~~~l~~~~~  420 (454)
                      +..++.++..++........  ..+.. ....|...+     +..+..+..++  ++.++..|..++..+..
T Consensus       762 r~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~  827 (876)
T 1qgr_A          762 RESCLEAYTGIVQGLKGDQENVHPDVM-LVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDLCT  827 (876)
T ss_dssp             HHHHHHHHHHHHHHHHCSSSSCCGGGG-GSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCcccccchHH-HHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            88888888888775432100  00000 111122222     24445554555  78999999888877654

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.59  E-value=4.8e-15  Score=142.66  Aligned_cols=350  Identities=14%  Similarity=0.116  Sum_probs=237.4

Q ss_pred             CCHHHHHHHHHHHHHHhccCCCCc----------HHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC-chhhH
Q 012897            8 DDSSLQLEATTQFRKLLSIERSPP----------IEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT-SENTK   76 (454)
Q Consensus         8 ~d~~~~~~a~~~L~~l~~~~~~~~----------~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~-~~~~~   76 (454)
                      .++.+|..|+..|+++........          ...-....+-..++..|.+++ +.+ ..++.+++.++... +..  
T Consensus        49 ~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~~i~~ia~~~~~~~--  124 (462)
T 1ibr_B           49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQCVAGIACAEIPVN--  124 (462)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHHHHHHHHHHHGGGT--
T ss_pred             CChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHHHHHHHHHHhcccc--
Confidence            378999999999999986521000          000112234456778888887 788 88999999998732 110  


Q ss_pred             HHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHHhchhh-hhhHHHHHHHHHHhh
Q 012897           77 VVIDHGAVPIFVKLLASP--SDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERA-KLSMLRNATWTLSNF  152 (454)
Q Consensus        77 ~~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~-~~~~~~~a~~~L~~l  152 (454)
                        .-.++++.|+..+.++  ++.++..++.+|..++... +..-.... ...++.++..+.... +..++..++.++.++
T Consensus       125 --~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~  201 (462)
T 1ibr_B          125 --QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNS  201 (462)
T ss_dssp             --CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred             --ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence              1146889999999888  8999999999999998532 21101000 124667777774432 789999999999997


Q ss_pred             cCCCC--CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHH
Q 012897          153 CRGKP--QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALR  230 (454)
Q Consensus       153 ~~~~~--~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~  230 (454)
                      .....  .........+++.+...+.+.++.++..++.++..++...+......+..++++.++..+.+.++.++..++.
T Consensus       202 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~  281 (462)
T 1ibr_B          202 LEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIE  281 (462)
T ss_dssp             TTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHH
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence            64321  0011111235777777888889999999999999998655433222222256777777788888999999999


Q ss_pred             HHhHhhccCc-----------------cchhhhhc---cCChHHHHHhhcCC------cchhHHHHHHHHHHHHhcCCHH
Q 012897          231 TVGNIVTGDD-----------------FQTQCIIT---YGALPYLLGLLTHS------HKKSIKKEACWTISNITAGNRD  284 (454)
Q Consensus       231 ~L~~l~~~~~-----------------~~~~~~~~---~~~l~~L~~~L~~~------~~~~v~~~a~~~L~nl~~~~~~  284 (454)
                      .+..++....                 .....+.+   ..+++.++..+...      .++.+|..|+.+|..++...++
T Consensus       282 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~  361 (462)
T 1ibr_B          282 FWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED  361 (462)
T ss_dssp             HHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH
Confidence            9998876420                 00000111   23556666666432      1457999999999999873322


Q ss_pred             HHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHH
Q 012897          285 QIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENIL  364 (454)
Q Consensus       285 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~  364 (454)
                         .++ ..+++.+...+.+.++.+|..|+.+++.++....++.... .-..+++.++..+.++++.|+..++++|.++.
T Consensus       362 ---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~-~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~  436 (462)
T 1ibr_B          362 ---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRIC  436 (462)
T ss_dssp             ---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             ---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence               122 2467777888888899999999999999998644221111 11457889999999999999999999999999


Q ss_pred             Hhhhh
Q 012897          365 KVGEA  369 (454)
Q Consensus       365 ~~~~~  369 (454)
                      .....
T Consensus       437 ~~~~~  441 (462)
T 1ibr_B          437 ELLPE  441 (462)
T ss_dssp             HHGGG
T ss_pred             Hhccc
Confidence            86543

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.58  E-value=3.5e-14  Score=152.89  Aligned_cols=393  Identities=12%  Similarity=0.115  Sum_probs=259.0

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCc----HHHHHHcCCHHHHHHhhcC-CCChhHHHHHHHHHHHhcCCCchhhH
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPP----IEEVIQSGVVPRFVEFLMR-EDYPQLQFEAAWALTNIASGTSENTK   76 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~----~~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~~l~~~~~~~~~   76 (454)
                      +..|.++++.+|..|+.+|..++.......    ...-....++|.|...+.+ ++ +.++..|+.+|..++........
T Consensus        92 l~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~~~~l~  170 (1230)
T 1u6g_C           92 CTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQGGLLV  170 (1230)
T ss_dssp             HHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHTCSSCT
T ss_pred             HHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHhHhHHH
Confidence            345677888889999999988886642220    1112234578999999984 66 89999999999999852221111


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC
Q 012897           77 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  156 (454)
Q Consensus        77 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  156 (454)
                      .. -..+++.++..+.++++.+|..++.+++.++...+.   .. -...++.++..+....+..++..++.++..++...
T Consensus       171 ~~-~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~  245 (1230)
T 1u6g_C          171 NF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA  245 (1230)
T ss_dssp             TT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHS
T ss_pred             HH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHh
Confidence            11 124567788888888999999999999999865432   11 12347778887754444567777888888887654


Q ss_pred             CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-----------------
Q 012897          157 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-----------------  219 (454)
Q Consensus       157 ~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----------------  219 (454)
                      +..-......++|.+...+.+.++.++..++.++..++...+......+. .+++.++..+..                 
T Consensus       246 ~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~~~~d~~~~~~~~  324 (1230)
T 1u6g_C          246 GHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNYDDEDEDENAMD  324 (1230)
T ss_dssp             SGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC----------------
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCCCccccccccccc
Confidence            32222345788999999999999999999999999888654432222222 345555554431                 


Q ss_pred             --------------------CCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHh
Q 012897          220 --------------------PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT  279 (454)
Q Consensus       220 --------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~  279 (454)
                                          ..+.+|..|+.++..++...+......+ ..+++.+...+.+. +..+|..++.++..++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~  402 (1230)
T 1u6g_C          325 ADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHAYLSLL  402 (1230)
T ss_dssp             --------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHHHHHHH
T ss_pred             ccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHHHHHHHH
Confidence                                1235688899999998874443223333 36678888888777 8899999999888776


Q ss_pred             cC--C-----------------HHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHH
Q 012897          280 AG--N-----------------RDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKP  340 (454)
Q Consensus       280 ~~--~-----------------~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~  340 (454)
                      ..  .                 ......++ ..+++.+.+.+.++++.+|..++.+++.++.........++  ..+++.
T Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l--~~ll~~  479 (1230)
T 1u6g_C          403 KQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI--PVLVPG  479 (1230)
T ss_dssp             HHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--HHHHHH
T ss_pred             HHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH--HHHHHH
Confidence            41  1                 11122222 34667777778888999999999999988764321111111  235778


Q ss_pred             HhhccCCCCH--HHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 012897          341 LCDLFVCPDP--RIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETY  418 (454)
Q Consensus       341 L~~~l~~~~~--~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~  418 (454)
                      +...+.++.+  .++..++..+..++......           .+...+  ...++.+.....+++..++..|...+..+
T Consensus       480 l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~-----------~~~~~l--~~llp~L~~~l~d~~~~v~~~al~~l~~l  546 (1230)
T 1u6g_C          480 IIFSLNDKSSSSNLKIDALSCLYVILCNHSPQ-----------VFHPHV--QALVPPVVACVGDPFYKITSEALLVTQQL  546 (1230)
T ss_dssp             HHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGG-----------GGHHHH--TTTHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCcchHHHHHHHHHHHHHHhCCHH-----------HHHhHH--HHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence            8888887764  88888999998887632211           122222  24566666667777787777776666655


Q ss_pred             c
Q 012897          419 W  419 (454)
Q Consensus       419 ~  419 (454)
                      .
T Consensus       547 ~  547 (1230)
T 1u6g_C          547 V  547 (1230)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.57  E-value=6.3e-14  Score=139.02  Aligned_cols=367  Identities=16%  Similarity=0.145  Sum_probs=253.9

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      ++.+.++|.+.+.-+..++..++...  +....    -+++.|.+-|++++ +.+|..|+++|+++..  ++..     .
T Consensus        76 ik~~~s~~~~~Krl~Yl~~~~~~~~~--~e~~~----l~in~l~kDL~~~n-~~vr~lAL~~L~~i~~--~~~~-----~  141 (618)
T 1w63_A           76 LKLIASQKFTDKRIGYLGAMLLLDER--QDVHL----LMTNCIKNDLNHST-QFVQGLALCTLGCMGS--SEMC-----R  141 (618)
T ss_dssp             HHHHHSSSHHHHHHHHHHHHHHCCCC--HHHHH----HHHHHHHHHHSCSS-SHHHHHHHHHHHHHCC--HHHH-----H
T ss_pred             HHHHcCCchHHHHHHHHHHHHHhCCC--cHHHH----HHHHHHHHhcCCCC-HhHHHHHHHHHHhcCC--HHHH-----H
Confidence            45567888888888888888877553  21111    14778888899988 8999999999999985  3332     2


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF  161 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  161 (454)
                      .+++.+..++.++++.+|..|+.++.++....|+...     +.++.+..++ .+.++.++..|+.+|..++...+.. .
T Consensus       142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~~~~~-~  214 (618)
T 1w63_A          142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLL-NEKNHGVLHTSVVLLTEMCERSPDM-L  214 (618)
T ss_dssp             HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTST-TCCCHHHHHHHHHHHHHHCCSHHHH-H
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHhChHH-H
Confidence            4578899999999999999999999999865554322     3566666677 6788999999999999998753221 2


Q ss_pred             hhhhchHHHHHHhhcC---------------CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC------CC
Q 012897          162 DQVRPALPALAQLVHS---------------NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG------HP  220 (454)
Q Consensus       162 ~~~~~~l~~l~~ll~~---------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~------~~  220 (454)
                      .....++|.++.+|.+               .++..+..++.+|..++...+....     .+.+.|..++.      +.
T Consensus       215 ~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~  289 (618)
T 1w63_A          215 AHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNV  289 (618)
T ss_dssp             HHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccch
Confidence            2345667777776652               4788999999999999977654322     44445555442      23


Q ss_pred             CCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHH
Q 012897          221 SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN  300 (454)
Q Consensus       221 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~  300 (454)
                      +..+...|++++..+... +    .+. ...+..|..++.++ ++.+|..|+.+|..++...+..    + ....+.++.
T Consensus       290 ~~aV~~ea~~~i~~l~~~-~----~l~-~~a~~~L~~~L~~~-d~~vr~~aL~~L~~i~~~~p~~----~-~~~~~~i~~  357 (618)
T 1w63_A          290 GNAILYETVLTIMDIKSE-S----GLR-VLAINILGRFLLNN-DKNIRYVALTSLLKTVQTDHNA----V-QRHRSTIVD  357 (618)
T ss_dssp             HHHHHHHHHHHHHHSCCC-H----HHH-HHHHHHHHHHHTCS-STTTHHHHHHHHHHHHHHHHHH----H-GGGHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCC-H----HHH-HHHHHHHHHHHhCC-CCchHHHHHHHHHHHHhhCHHH----H-HHHHHHHHH
Confidence            456888889998887532 1    111 14567888889888 8999999999999998754432    2 235678889


Q ss_pred             HhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccc
Q 012897          301 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADV  380 (454)
Q Consensus       301 ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~  380 (454)
                      ++.+++..+|..|+.++..++...+.+.        +++.|...+.+.+++++..++.+|..+........     .|..
T Consensus       358 ~l~d~d~~Ir~~alelL~~l~~~~nv~~--------iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~-----~~~v  424 (618)
T 1w63_A          358 CLKDLDVSIKRRAMELSFALVNGNNIRG--------MMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSK-----RWHI  424 (618)
T ss_dssp             GGGSSCHHHHHHHHHHHHHHCCSSSTHH--------HHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCH-----HHHH
T ss_pred             HccCCChhHHHHHHHHHHHHcccccHHH--------HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccH-----HHHH
Confidence            9999999999999999999988644222        34666677777899999999999999987532111     1133


Q ss_pred             cHHHHHHHHhc------cHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 012897          381 NQYAQLVEEAE------GLEKIENLQSHDNNEIYEKAVKILETYWL  420 (454)
Q Consensus       381 ~~~~~~l~~~g------~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  420 (454)
                      ..+...+...|      .+..+.++... +++.+..+...+-.++.
T Consensus       425 ~~ll~lL~~~~~~v~~~~~~~l~~ii~~-~p~l~~~~v~~L~~~l~  469 (618)
T 1w63_A          425 DTIMRVLTTAGSYVRDDAVPNLIQLITN-SVEMHAYTVQRLYKAIL  469 (618)
T ss_dssp             HHHHHHHHHTGGGSCSSHHHHHHHHHHH-SCSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHh
Confidence            33444455444      23444444332 23455555554444443

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.47  E-value=2.1e-12  Score=110.10  Aligned_cols=187  Identities=21%  Similarity=0.185  Sum_probs=157.9

Q ss_pred             cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 012897           38 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR  117 (454)
Q Consensus        38 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  117 (454)
                      .+.++.|+..|++++ +.+|..|++.|+.+..           ...++.|+.++.++++.+|..++++|+.+..  +   
T Consensus        18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--~---   80 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E---   80 (211)
T ss_dssp             GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--G---
T ss_pred             HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H---
Confidence            456899999999988 9999999999998765           2578999999999999999999999999852  1   


Q ss_pred             HHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 012897          118 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT  197 (454)
Q Consensus       118 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  197 (454)
                            +.++.++..+ .++++.++..++++|..+..          ...++.|..++.++++.++..++.+|+.+..  
T Consensus        81 ------~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--  141 (211)
T 3ltm_A           81 ------RAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--  141 (211)
T ss_dssp             ------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred             ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence                  2477888888 77889999999999999864          3578999999999999999999999999853  


Q ss_pred             hHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHH
Q 012897          198 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN  277 (454)
Q Consensus       198 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~n  277 (454)
                               ...++.|..++.++++.+|..++.+|+.+..           ...++.|..++.++ ++.+|..|..+|.+
T Consensus       142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~  200 (211)
T 3ltm_A          142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET  200 (211)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence                     2467889999999999999999999999853           24567888899888 99999999999998


Q ss_pred             HhcC
Q 012897          278 ITAG  281 (454)
Q Consensus       278 l~~~  281 (454)
                      +...
T Consensus       201 ~~~~  204 (211)
T 3ltm_A          201 HKSF  204 (211)
T ss_dssp             ----
T ss_pred             cCCC
Confidence            8764

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.47  E-value=2.2e-12  Score=109.99  Aligned_cols=188  Identities=22%  Similarity=0.210  Sum_probs=157.3

Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897           81 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP  160 (454)
Q Consensus        81 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (454)
                      .+.++.|+..|.++++.+|..+++.|+.+..  +         ..++.|++.+ .++++.++..++++|..+..      
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--~---------~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--E---------RAVEPLIKAL-KDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHT-TCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--c---------cHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC------
Confidence            4578999999999999999999999999843  1         3578889988 67789999999999999863      


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897          161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD  240 (454)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  240 (454)
                          ...++.+..++.++++.++..++++|..+..           .+.++.|+.++.++++.+|..++.+|+.+..   
T Consensus        80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  141 (211)
T 3ltm_A           80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---  141 (211)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence                3678999999999999999999999998853           2467889999999999999999999999853   


Q ss_pred             cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHh
Q 012897          241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA  320 (454)
Q Consensus       241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  320 (454)
                              ...++.|..++.++ ++.+|..|+++|+.+..  +         ..++.|..+++++++.||..|..+|.++
T Consensus       142 --------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~~  201 (211)
T 3ltm_A          142 --------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH  201 (211)
T ss_dssp             --------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred             --------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence                    14578899999888 99999999999999853  2         2567788889999999999999999998


Q ss_pred             cCCC
Q 012897          321 TSGG  324 (454)
Q Consensus       321 ~~~~  324 (454)
                      ....
T Consensus       202 ~~~~  205 (211)
T 3ltm_A          202 KSFN  205 (211)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            7643

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.46  E-value=8e-12  Score=105.59  Aligned_cols=185  Identities=22%  Similarity=0.224  Sum_probs=157.0

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF  161 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  161 (454)
                      +..+.++++|.++++.+|..+++.|+.+..  +         ..++.+++.+ .++++.++..++++|..+..       
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD--E---------RAVEPLIKAL-KDEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--G---------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC--h---------hHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence            467899999999999999999999999843  1         2478888999 67889999999999999853       


Q ss_pred             hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCcc
Q 012897          162 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF  241 (454)
Q Consensus       162 ~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  241 (454)
                         ...++.+..++.++++.++..++++|..+..           ...++.+..++.++++.+|..|+++|+.+..    
T Consensus        75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----  136 (201)
T 3ltj_A           75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----  136 (201)
T ss_dssp             ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence               3678999999999999999999999998753           2467888999999999999999999999853    


Q ss_pred             chhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhc
Q 012897          242 QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT  321 (454)
Q Consensus       242 ~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  321 (454)
                             ...++.|..++.++ ++.+|..|+++|+.+.  .+         ..++.|..++.++++.+|..|..+|.++-
T Consensus       137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~--~~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--GE---------RVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--SH---------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--ch---------hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence                   24678899999988 9999999999999984  22         25677888889999999999999999874


Q ss_pred             C
Q 012897          322 S  322 (454)
Q Consensus       322 ~  322 (454)
                      .
T Consensus       198 ~  198 (201)
T 3ltj_A          198 S  198 (201)
T ss_dssp             -
T ss_pred             h
Confidence            3

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.45  E-value=4.3e-12  Score=107.27  Aligned_cols=184  Identities=22%  Similarity=0.194  Sum_probs=157.4

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 012897           39 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD  118 (454)
Q Consensus        39 ~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  118 (454)
                      +..+.++++|.+++ +.+|..|+++|+.+..           ...++.|+.+|.++++.+|..++++|+.+..  +    
T Consensus        14 ~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--~----   75 (201)
T 3ltj_A           14 EKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E----   75 (201)
T ss_dssp             HHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G----
T ss_pred             cchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H----
Confidence            45788999999999 9999999999998765           2468999999999999999999999999842  1    


Q ss_pred             HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 012897          119 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN  198 (454)
Q Consensus       119 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~  198 (454)
                           ..++.++..+ .++++.++..++++|..+..          ...++.+..++.++++.++..++++|+.+..   
T Consensus        76 -----~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  136 (201)
T 3ltj_A           76 -----RAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---  136 (201)
T ss_dssp             -----GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred             -----HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence                 2477888888 67889999999999999854          3578899999999999999999999998853   


Q ss_pred             HHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHH
Q 012897          199 DKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI  278 (454)
Q Consensus       199 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl  278 (454)
                              ...++.|..++.++++.+|..|+.+|+.+..           ...++.|..++.++ ++.+|..|..+|.++
T Consensus       137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLETH  196 (201)
T ss_dssp             --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHHC
T ss_pred             --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence                    2567889999999999999999999999842           13567888889888 999999999999887


Q ss_pred             h
Q 012897          279 T  279 (454)
Q Consensus       279 ~  279 (454)
                      .
T Consensus       197 ~  197 (201)
T 3ltj_A          197 K  197 (201)
T ss_dssp             C
T ss_pred             H
Confidence            4

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.39  E-value=3.1e-11  Score=119.34  Aligned_cols=323  Identities=13%  Similarity=0.116  Sum_probs=226.7

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      ++.+.++|...+..+.-++..++... ++... +    +++.+.+-+++++ +.++..|+.+++++..  ++...     
T Consensus        80 vkl~~s~~~~~Krl~YL~l~~~~~~~-~e~~~-L----~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~~-----  145 (621)
T 2vgl_A           80 VNLLSSNRYTEKQIGYLFISVLVNSN-SELIR-L----INNAIKNDLASRN-PTFMGLALHCIANVGS--REMAE-----  145 (621)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHSCCCC-HHHHH-H----HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHHH-----
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHccCC-cHHHH-H----HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHHH-----
Confidence            56788999999999999998887553 22111 1    3667888889999 9999999999999975  44333     


Q ss_pred             CChHHHHHhh--CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCC
Q 012897           82 GAVPIFVKLL--ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP  159 (454)
Q Consensus        82 g~i~~L~~lL--~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  159 (454)
                      .+++.+.+++  .+.++-+|..|+.++.++....|..   +...+.++.+.+++ .+.++.++..|+.++..++...+. 
T Consensus       146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~~~~~-  220 (621)
T 2vgl_A          146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQKNPE-  220 (621)
T ss_dssp             HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCHH-
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHHHhChH-
Confidence            3578889999  8899999999999999998655432   21236788899988 788899999999999999876422 


Q ss_pred             ChhhhhchHHHHH----HhhcCC-------------ChhHHHHHHHHHHHhccCC-hHHHHHHHHhCcHHHHHHhcCC--
Q 012897          160 PFDQVRPALPALA----QLVHSN-------------DEEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLGH--  219 (454)
Q Consensus       160 ~~~~~~~~l~~l~----~ll~~~-------------~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~--  219 (454)
                         .....+|.++    +++...             ++..+...+..+..++... +.....+.+  ++..++..+.+  
T Consensus       221 ---~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~  295 (621)
T 2vgl_A          221 ---EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPP  295 (621)
T ss_dssp             ---HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCC
T ss_pred             ---HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCc
Confidence               1223444444    444321             6789999999999988643 333232322  34444433211  


Q ss_pred             -------CCC--cchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 012897          220 -------PSP--SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI  290 (454)
Q Consensus       220 -------~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~  290 (454)
                             .+.  .+...++.++..+.. .+....     .++..|..++.++ ++.+|..++..+..++...+. . ..+
T Consensus       296 ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~-~-~~~  366 (621)
T 2vgl_A          296 KSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS-H-EAV  366 (621)
T ss_dssp             SCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT-H-HHH
T ss_pred             ccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc-H-HHH
Confidence                   122  677778888877752 111111     4567788888878 899999999999999875432 1 122


Q ss_pred             hCCChHHHHHHhh-hcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 012897          291 DAGLVGPLVNLLQ-NAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV  366 (454)
Q Consensus       291 ~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~  366 (454)
                       ....+.++..+. +++..++..++..+..++..   .....     ++..|...+...+.+++..++..+..+...
T Consensus       367 -~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~---~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k  434 (621)
T 2vgl_A          367 -KTHIETVINALKTERDVSVRQRAVDLLYAMCDR---SNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAEK  434 (621)
T ss_dssp             -HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH---HHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh---hhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence             346778888888 88999999999999999752   33333     355666666677888887777777777543

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.36  E-value=1.4e-11  Score=121.81  Aligned_cols=325  Identities=12%  Similarity=0.106  Sum_probs=219.0

Q ss_pred             ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhh--cCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897            3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFL--MREDYPQLQFEAAWALTNIASGTSENTKVVID   80 (454)
Q Consensus         3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL--~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (454)
                      +.|+++|+.++-.|+++|.++...   +    +. ..+++.+.+++  .+.+ +.+|..|+.++.++....++...   .
T Consensus       118 kDl~~~n~~ir~lALr~L~~i~~~---e----~~-~~l~~~v~~~l~~~d~~-~~VRK~A~~al~kl~~~~p~~~~---~  185 (621)
T 2vgl_A          118 NDLASRNPTFMGLALHCIANVGSR---E----MA-EAFAGEIPKILVAGDTM-DSVKQSAALCLLRLYRTSPDLVP---M  185 (621)
T ss_dssp             HHHHSCCHHHHHHHHHHHHHHCCH---H----HH-HHHTTHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHCGGGCC---C
T ss_pred             HhcCCCCHHHHHHHHHHhhccCCH---H----HH-HHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhChhhcC---c
Confidence            456788999999999999988532   1    22 24678889999  7788 99999999999999985554332   2


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc----h--h----------hhhhHHHH
Q 012897           81 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN----E--R----------AKLSMLRN  144 (454)
Q Consensus        81 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~----~--~----------~~~~~~~~  144 (454)
                      .++++.+..+|.++++.++..|+.++..++..++..-     ...++.+++.+.    .  .          +++-.+..
T Consensus       186 ~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~-----~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~  260 (621)
T 2vgl_A          186 GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEF-----KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVK  260 (621)
T ss_dssp             CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHH-----TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHH
T ss_pred             hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHH
Confidence            4899999999999999999999999999986554310     112344444332    1  1          15778888


Q ss_pred             HHHHHHhhcCCCCCCChhhhhchHHHHHHhh---------cCCC--hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 012897          145 ATWTLSNFCRGKPQPPFDQVRPALPALAQLV---------HSND--EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL  213 (454)
Q Consensus       145 a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll---------~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L  213 (454)
                      .+..+..++...+.........+++.++..+         ++.+  ..+...++.++..+.. .+....     .++..|
T Consensus       261 il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L  334 (621)
T 2vgl_A          261 LLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQL  334 (621)
T ss_dssp             HHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHH
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHH
Confidence            8888888775321111111223333333322         1122  3788888888888763 222212     456678


Q ss_pred             HHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhc-CCcchhHHHHHHHHHHHHhcCCHHHHHHHHhC
Q 012897          214 VELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT-HSHKKSIKKEACWTISNITAGNRDQIQAVIDA  292 (454)
Q Consensus       214 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~  292 (454)
                      ..++.++++.++..++..|..++...+. .. .+ ......++..|+ ++ +..+|..++.++..++.  +.++..    
T Consensus       335 ~~~L~~~~~niry~aL~~l~~l~~~~~~-~~-~~-~~~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~--~~Nv~~----  404 (621)
T 2vgl_A          335 GQFLQHRETNLRYLALESMCTLASSEFS-HE-AV-KTHIETVINALKTER-DVSVRQRAVDLLYAMCD--RSNAQQ----  404 (621)
T ss_dssp             HHHSSCSCHHHHHHHHHHHHHHTTCTTT-HH-HH-HTTHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC--HHHHHH----
T ss_pred             HHHhcCCCcchHHHHHHHHHHHHhccCc-HH-HH-HHHHHHHHHHhccCC-CHhHHHHHHHHHHHHcC--hhhHHH----
Confidence            8888888999999999999999976542 11 22 246678888888 77 89999999999999974  444443    


Q ss_pred             CChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 012897          293 GLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG  367 (454)
Q Consensus       293 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~  367 (454)
                       ++..|...+...+.+.+..+..+++.++..-.+..      .-++..|++++......+...+...+..++...
T Consensus       405 -Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~------~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~  472 (621)
T 2vgl_A          405 -IVAEMLSYLETADYSIREEIVLKVAILAEKYAVDY------TWYVDTILNLIRIAGDYVSEEVWYRVIQIVINR  472 (621)
T ss_dssp             -HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSST------HHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGG
T ss_pred             -HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHHHhhcccchHHHHHHHHHHHhCC
Confidence             45568888888899999999999999875211111      113566666666544444445555666665443

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.24  E-value=1.9e-09  Score=84.34  Aligned_cols=218  Identities=14%  Similarity=0.157  Sum_probs=174.8

Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCC
Q 012897           80 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP  159 (454)
Q Consensus        80 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  159 (454)
                      +..++..++.+|++.-..++.+|+.++.+++...++....+     +..|+.++..+...........+++.++..    
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i----  100 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKE----  100 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHH----
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHh----
Confidence            44578899999999999999999999999998877765543     556677776666667767777888888764    


Q ss_pred             ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccC
Q 012897          160 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD  239 (454)
Q Consensus       160 ~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  239 (454)
                      ......+.+|.+..-.+-++++++.+..++|..++..++....     +++..+..++.+++..-+..|+..++.+..+.
T Consensus       101 ~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~  175 (253)
T 2db0_A          101 KPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS  175 (253)
T ss_dssp             CHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred             CHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence            3455678899999988999999999999999999988876544     56778999999998888888999998888765


Q ss_pred             ccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHH
Q 012897          240 DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN  319 (454)
Q Consensus       240 ~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~  319 (454)
                      ..+..     ..++.|..+|.+. +.-||..|..+|.+++..++..+..      +..-++-+++.+..++.....+|+.
T Consensus       176 ~~yv~-----PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~S~lv~~~V~egL~r  243 (253)
T 2db0_A          176 FKYVN-----PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDTSSLVNKTVKEGISR  243 (253)
T ss_dssp             HHHHG-----GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred             ccccC-----cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            54333     6789999999999 9999999999999999988874432      2234455677788899999999988


Q ss_pred             hcCC
Q 012897          320 ATSG  323 (454)
Q Consensus       320 l~~~  323 (454)
                      ++..
T Consensus       244 l~l~  247 (253)
T 2db0_A          244 LLLL  247 (253)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            8653

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=99.13  E-value=8.6e-10  Score=90.19  Aligned_cols=227  Identities=17%  Similarity=0.150  Sum_probs=174.4

Q ss_pred             hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchh
Q 012897          165 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ  244 (454)
Q Consensus       165 ~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  244 (454)
                      .+.+..+..+++..|+.++..++.+|..+....+.......-..+++.++.++.+++..+...|++||..+..+.+-...
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            45778899999999999999999999999876544445444458999999999999999999999999999987764433


Q ss_pred             hhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCC
Q 012897          245 CIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG  324 (454)
Q Consensus       245 ~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  324 (454)
                      .+.  .+...+..+++++ ++-.+.+|+-.++.+--.+..       ..++..+.+++.+.+++++..+..++.+++...
T Consensus       112 ~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S  181 (265)
T 3b2a_A          112 TFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS  181 (265)
T ss_dssp             HHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred             HHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence            332  4567888999988 999999999999988433211       235777888888899999999999999998864


Q ss_pred             CHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHh-cCC
Q 012897          325 THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ-SHD  403 (454)
Q Consensus       325 ~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~-~~~  403 (454)
                      ....    .-.+++.-+-.++++.|+.++..++.++..++...-..           +...-+  .+......++. ...
T Consensus       182 ~D~~----i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~-----------~~~~~~--~~~~~~v~~l~~~~~  244 (265)
T 3b2a_A          182 ADSG----HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLE-----------NVKIEL--LKISRIVDGLVYREG  244 (265)
T ss_dssp             SSCC----CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCS-----------CCHHHH--HHHHHHHHHGGGCSS
T ss_pred             CCHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccH-----------hHHHHH--HHHHHHHHHHHHhcC
Confidence            3211    12346777888999999999999999999998762211           112222  23445667777 788


Q ss_pred             CHHHHHHHHHHHHHh
Q 012897          404 NNEIYEKAVKILETY  418 (454)
Q Consensus       404 ~~~v~~~a~~~l~~~  418 (454)
                      .|.++.+|..+.+.+
T Consensus       245 ~~~~~~ka~~v~~~l  259 (265)
T 3b2a_A          245 APIIRLKAKKVSDLI  259 (265)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHH
Confidence            899999998876643

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.13  E-value=3.4e-09  Score=106.19  Aligned_cols=265  Identities=14%  Similarity=0.156  Sum_probs=187.0

Q ss_pred             CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC-------ChhHHHHHHHHHHHhcCCCchhhHHHH
Q 012897            7 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-------YPQLQFEAAWALTNIASGTSENTKVVI   79 (454)
Q Consensus         7 s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~   79 (454)
                      ++++.++..|+..|.-+-.+...    .     ++..|...|.+++       .+.++..|+..|+-+..++...     
T Consensus       406 s~~~~ik~GAllaLGli~ag~~~----~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e-----  471 (963)
T 4ady_A          406 ASSRFIKGGSLYGLGLIYAGFGR----D-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI-----  471 (963)
T ss_dssp             CSCHHHHHHHHHHHHHHTTTTTH----H-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH-----
T ss_pred             CCcHHHHHHHHHHHHHhcCCCcH----H-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH-----
Confidence            67889999999999988777421    1     3566777776544       3678999999999987643211     


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCC
Q 012897           80 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP  159 (454)
Q Consensus        80 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  159 (454)
                        .+++.|..++.+.+..++..++.+|+.+...... .+      ++..++..+..+.+..+++.++.+|+.+....   
T Consensus       472 --ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~---  539 (963)
T 4ady_A          472 --EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK-PE------AIHDMFTYSQETQHGNITRGLAVGLALINYGR---  539 (963)
T ss_dssp             --HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-HH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC---
T ss_pred             --HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-HH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC---
Confidence              2467788888877778888888899887422211 11      25566666656667889999999999886553   


Q ss_pred             ChhhhhchHHHHHHhhc-CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc-CCCCCcchhhHHHHHhHhhc
Q 012897          160 PFDQVRPALPALAQLVH-SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVT  237 (454)
Q Consensus       160 ~~~~~~~~l~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~  237 (454)
                           ...++.++..|. +.++-++..++.+++.-.......       ..++.|++.+ .+.+..+|..|+..|+.+..
T Consensus       540 -----~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~  607 (963)
T 4ady_A          540 -----QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLL  607 (963)
T ss_dssp             -----GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTS
T ss_pred             -----hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHHHHHHHHHHHHhhcc
Confidence                 244566666665 578888888888776443332211       1234344443 45677899999999999887


Q ss_pred             cCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHH
Q 012897          238 GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAI  317 (454)
Q Consensus       238 ~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL  317 (454)
                      +.++         .++.++..|.+..++.+|..|+++|+.++.+++.       ..++..|..+..+.+..||..|+.+|
T Consensus       608 g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~AL  671 (963)
T 4ady_A          608 RDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIAL  671 (963)
T ss_dssp             SSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             CCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHH
Confidence            6542         3455666554444999999999999999986543       12566788888888999999999999


Q ss_pred             HHhcCCCC
Q 012897          318 SNATSGGT  325 (454)
Q Consensus       318 ~~l~~~~~  325 (454)
                      +.+....+
T Consensus       672 G~Ig~gtn  679 (963)
T 4ady_A          672 SMILIQQT  679 (963)
T ss_dssp             HHHSTTCC
T ss_pred             HHHhcCCc
Confidence            99987543

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.11  E-value=3.8e-09  Score=95.23  Aligned_cols=272  Identities=13%  Similarity=0.061  Sum_probs=161.6

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      ++++.++|..++.-...++..++... .+..  +    +++.+.+=+++++ +-+|-.|+++|+++..  ++....    
T Consensus        74 ~kl~~s~d~~lKrLvYLyl~~~~~~~-~e~i--L----v~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~~~----  139 (355)
T 3tjz_B           74 TKLFQSNDPTLRRMCYLTIKEMSCIA-EDVI--I----VTSSLTKDMTGKE-DSYRGPAVRALCQITD--STMLQA----  139 (355)
T ss_dssp             HGGGGCCCHHHHHHHHHHHHHHTTTS-SCGG--G----GHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTHHH----
T ss_pred             HHHhcCCCHHHHHHHHHHHHHhCCCH-HHHH--H----HHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHHHH----
Confidence            56889999999999999998887663 3322  1    5778889999999 9999999999999986  343333    


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF  161 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  161 (454)
                       +.+.+.+.+.+.++-+|..|+.+..++....|+..     .+.+..+-+++ .+.++.++..|+.++..+...+     
T Consensus       140 -l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d-----  207 (355)
T 3tjz_B          140 -IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND-----  207 (355)
T ss_dssp             -HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC-----
T ss_pred             -HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc-----
Confidence             45778888999999999999999999987777532     24688888888 7778889999999999998753     


Q ss_pred             hhhhchHHHHHHhhcCC---ChhHHHHHHHHHHHhccCC-hHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhc
Q 012897          162 DQVRPALPALAQLVHSN---DEEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT  237 (454)
Q Consensus       162 ~~~~~~l~~l~~ll~~~---~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  237 (454)
                         ...+..++..+...   ++-.+...++.+..++..+ +.     ....+++.+..+|++.++.|...|++++..+..
T Consensus       208 ---~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~  279 (355)
T 3tjz_B          208 ---RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG  279 (355)
T ss_dssp             ---HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHHTC---
T ss_pred             ---hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Confidence               22344445444432   4555556666665555443 21     223677888889999999999999999998865


Q ss_pred             cCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHH
Q 012897          238 GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAI  317 (454)
Q Consensus       238 ~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL  317 (454)
                      .....    . ..++..+..++.++ ++.+|..|+..|..+....|.....     .-..+.+++.+++..+...|..+|
T Consensus       280 ~~~~~----~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~Aittl  348 (355)
T 3tjz_B          280 CSAKE----L-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATLAITTL  348 (355)
T ss_dssp             -------------CCCTHHHHHHSS-SSSSHHHHHHCC------------------------------------------
T ss_pred             CCHHH----H-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHHHHHHh
Confidence            22211    1 24456777778888 8899999999999998876665432     334577778888877776665555


Q ss_pred             H
Q 012897          318 S  318 (454)
Q Consensus       318 ~  318 (454)
                      .
T Consensus       349 l  349 (355)
T 3tjz_B          349 L  349 (355)
T ss_dssp             -
T ss_pred             h
Confidence            4

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.07  E-value=2e-09  Score=107.79  Aligned_cols=219  Identities=16%  Similarity=0.096  Sum_probs=155.6

Q ss_pred             HHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCC-
Q 012897           35 VIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAGD-  112 (454)
Q Consensus        35 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~-  112 (454)
                      ..+..++| +++.|++++ +..|..|+++|++++. ++..+..+...+++..++. +|.+++.++|..|+++|.||+.+ 
T Consensus        31 ~~~~~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~  107 (684)
T 4gmo_A           31 LREDKILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE  107 (684)
T ss_dssp             HHHHTTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred             cchhhHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence            33445555 567799998 8999999999999998 8899999999999887654 78889999999999999999843 


Q ss_pred             ChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHH
Q 012897          113 SPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSY  192 (454)
Q Consensus       113 ~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~  192 (454)
                      .+..+..+.+.|++++|..++.+. .        ..+............ .....+           ..+...++.+|.+
T Consensus       108 g~d~~~~l~~~~il~~L~~~l~~~-~--------~~~~~~~~~~~~~~~-~~~~~~-----------~~~~~~~l~lL~~  166 (684)
T 4gmo_A          108 EADFCVHLYRLDVLTAIEHAAKAV-L--------ETLTTSEPPFSKLLK-AQQRLV-----------WDITGSLLVLIGL  166 (684)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHH-H--------HHHHCBTTBGGGSCH-HHHHHH-----------HHHHHHHHHHHHH
T ss_pred             CchHHHHHHHcChHHHHHHHHHhh-H--------HHHhhhccccccccH-HHHHHH-----------HHHHHHHHHHHHH
Confidence            567788899999999999988321 1        112222111100000 001111           1234556677888


Q ss_pred             hccCChHHHHHHHHhCcHHHHHHhcCCC---CCcchhhHHHHHhHhhccCccchhhhhccCChH---HHHHhhcCCcchh
Q 012897          193 LSDGTNDKIQAVIEAGVCPRLVELLGHP---SPSVLIPALRTVGNIVTGDDFQTQCIITYGALP---YLLGLLTHSHKKS  266 (454)
Q Consensus       193 l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~---~L~~~L~~~~~~~  266 (454)
                      ++..+......+...+.++.++..+.+.   ..+++..|+.+|..++..++...+.+.+.+...   .++.+.+ . ...
T Consensus       167 L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~-~~~  244 (684)
T 4gmo_A          167 LALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-G-TDP  244 (684)
T ss_dssp             HHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-S-SCT
T ss_pred             HHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-C-CcH
Confidence            8877777777788888899999888442   346899999999999998887777777765433   3333333 3 334


Q ss_pred             HHHHHHHHHHHHh
Q 012897          267 IKKEACWTISNIT  279 (454)
Q Consensus       267 v~~~a~~~L~nl~  279 (454)
                      .+..+++.+.|+.
T Consensus       245 ~~~la~giL~Ni~  257 (684)
T 4gmo_A          245 RAVMACGVLHNVF  257 (684)
T ss_dssp             THHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHh
Confidence            5778889998875

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.06  E-value=1.3e-08  Score=91.81  Aligned_cols=276  Identities=13%  Similarity=0.130  Sum_probs=160.7

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 012897           40 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL  119 (454)
Q Consensus        40 ~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~  119 (454)
                      +...+++++.+++ ..++......+.+++...++..      =++..+.+=++++++-+|-.|+++++++....  .-+.
T Consensus        69 lf~~v~kl~~s~d-~~lKrLvYLyl~~~~~~~~e~i------Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~--m~~~  139 (355)
T 3tjz_B           69 AFFAMTKLFQSND-PTLRRMCYLTIKEMSCIAEDVI------IVTSSLTKDMTGKEDSYRGPAVRALCQITDST--MLQA  139 (355)
T ss_dssp             HHHHHHGGGGCCC-HHHHHHHHHHHHHHTTTSSCGG------GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT--THHH
T ss_pred             HHHHHHHHhcCCC-HHHHHHHHHHHHHhCCCHHHHH------HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH--HHHH
Confidence            4667788999999 8999999888988888533321      24788888899999999999999999996432  2222


Q ss_pred             HHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 012897          120 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND  199 (454)
Q Consensus       120 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~  199 (454)
                           ..+.+.+.+ .+.++.|+..|+.+...|....    .....++++.+..++.+.++.++.+|+.++..+...+..
T Consensus       140 -----l~~~lk~~L-~d~~pyVRk~A~l~~~kL~~~~----pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~  209 (355)
T 3tjz_B          140 -----IERYMKQAI-VDKVPSVSSSALVSSLHLLKCS----FDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL  209 (355)
T ss_dssp             -----HHHHHHHHH-TCSSHHHHHHHHHHHHHHTTTC----HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH
T ss_pred             -----HHHHHHHHc-CCCCHHHHHHHHHHHHHHhccC----HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH
Confidence                 244555666 7889999999999999998654    234467899999999999999999999999999876542


Q ss_pred             HHHHHHHhCcHHHHHHhcCCC---CCcchhhHHHHHhHhhccC-ccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHH
Q 012897          200 KIQAVIEAGVCPRLVELLGHP---SPSVLIPALRTVGNIVTGD-DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI  275 (454)
Q Consensus       200 ~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L  275 (454)
                      ..         ..++..+...   ++-.+...++.+..++..+ +.     ....+++.+..+|++. ++.|..+|++++
T Consensus       210 a~---------~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~-~~aVvyEa~k~I  274 (355)
T 3tjz_B          210 AV---------SKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNK-HEMVVYEAASAI  274 (355)
T ss_dssp             HH---------HHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCS-SHHHHHHHHHHH
T ss_pred             HH---------HHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCC-ChHHHHHHHHHH
Confidence            22         2233333222   2233333445554555433 21     2236778888899988 999999999999


Q ss_pred             HHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHH
Q 012897          276 SNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV  355 (454)
Q Consensus       276 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~  355 (454)
                      ..+...+..    .. ..++..|..++.++++.+|-.|+..|..++... +....     ..-.-+..+++++|..+...
T Consensus       275 ~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~-P~~v~-----~~n~~ie~li~d~n~sI~t~  343 (355)
T 3tjz_B          275 VNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKH-PSAVT-----ACNLDLENLVTDANRSIATL  343 (355)
T ss_dssp             TC----------------CCCTHHHHHHSSSSSSHHHHHHCC--------------------------------------
T ss_pred             HhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHC-cHHHH-----HHHHHHHHHccCCcHhHHHH
Confidence            988652222    11 345677888888999999999999999887753 22221     24556777888888887766


Q ss_pred             HHHHH
Q 012897          356 CLEGL  360 (454)
Q Consensus       356 al~~L  360 (454)
                      |+..|
T Consensus       344 Aittl  348 (355)
T 3tjz_B          344 AITTL  348 (355)
T ss_dssp             -----
T ss_pred             HHHHh
Confidence            65443

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.96  E-value=8.1e-08  Score=75.26  Aligned_cols=218  Identities=14%  Similarity=0.209  Sum_probs=167.8

Q ss_pred             hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-CCCCcchhhHHHHHhHhhccCccch
Q 012897          165 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLIPALRTVGNIVTGDDFQT  243 (454)
Q Consensus       165 ~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~  243 (454)
                      ..++..++.+|+++-..++.+|+..+.+++...++....+.     ..|+.+++ +..-.......++++.++...++..
T Consensus        31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v  105 (253)
T 2db0_A           31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV  105 (253)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence            57888999999999999999999999999998887766444     45666654 3444566788899999998777544


Q ss_pred             hhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCC
Q 012897          244 QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSG  323 (454)
Q Consensus       244 ~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  323 (454)
                      .     +.++.+..-+.-+ ++++|.+..++|..++..+|....     +++..+..++.+++..=+..|+..+..+..+
T Consensus       106 ~-----~vVp~lfanyrig-d~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen  174 (253)
T 2db0_A          106 K-----SMIPVLFANYRIG-DEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGEN  174 (253)
T ss_dssp             H-----HHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT
T ss_pred             H-----hhHHHHHHHHhcC-CccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhcc
Confidence            4     5678888888888 999999999999999998887653     4566788999988877788888888777664


Q ss_pred             CCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCC
Q 012897          324 GTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHD  403 (454)
Q Consensus       324 ~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~  403 (454)
                      + .   .++  .-+++.|..+|.++|.-|+..++.+|.++....++             ++..+.     .++++ .++.
T Consensus       175 ~-~---~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-------------lRkii~-----~kl~e-~~D~  229 (253)
T 2db0_A          175 S-F---KYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK-------------LRKVVI-----KRLEE-LNDT  229 (253)
T ss_dssp             T-H---HHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-------------HHHHHH-----HHHHH-CCCS
T ss_pred             C-c---ccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-------------HHHHHH-----HHHHH-hcCc
Confidence            3 2   222  23689999999999999999999999999987665             344433     44444 5777


Q ss_pred             CHHHHHHHHHHHHHhcCcCC
Q 012897          404 NNEIYEKAVKILETYWLEED  423 (454)
Q Consensus       404 ~~~v~~~a~~~l~~~~~~~~  423 (454)
                      ++.++..+..-+.++.--|.
T Consensus       230 S~lv~~~V~egL~rl~l~e~  249 (253)
T 2db0_A          230 SSLVNKTVKEGISRLLLLEG  249 (253)
T ss_dssp             CHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            88888888888877654443

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.87  E-value=5.5e-09  Score=104.67  Aligned_cols=196  Identities=14%  Similarity=0.059  Sum_probs=146.1

Q ss_pred             chHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH-HHhcCCCCCcchhhHHHHHhHhhccC-ccch
Q 012897          166 PALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL-VELLGHPSPSVLIPALRTVGNIVTGD-DFQT  243 (454)
Q Consensus       166 ~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L-~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~  243 (454)
                      .++|. ++.|+++++..|..||++|++++.. +.....+...+++..+ ..+|.+++.++|.+|+++|.||+... ...+
T Consensus        35 ~i~Pl-l~~L~S~~~~~r~~A~~al~~l~~~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~  112 (684)
T 4gmo_A           35 KILPV-LKDLKSPDAKSRTTAAGAIANIVQD-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC  112 (684)
T ss_dssp             TTHHH-HHHHSSSCCSHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hHHHH-HHHcCCCCHHHHHHHHHHHHHHHcC-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence            45554 4668999999999999999999964 5555667777888765 56789999999999999999999754 3456


Q ss_pred             hhhhccCChHHHHHhhcCCc--------------------chhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhh
Q 012897          244 QCIITYGALPYLLGLLTHSH--------------------KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQ  303 (454)
Q Consensus       244 ~~~~~~~~l~~L~~~L~~~~--------------------~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~  303 (454)
                      ..+++.++++.|..++....                    -..+...++.+|.+++.++.+....+...+.++.|+..+.
T Consensus       113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~  192 (684)
T 4gmo_A          113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI  192 (684)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence            67888899999998885320                    0123456778888998888888888888899999999886


Q ss_pred             hc---chhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcH---HHhhccCCCCHHHHHHHHHHHHHHHH
Q 012897          304 NA---EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIK---PLCDLFVCPDPRIVTVCLEGLENILK  365 (454)
Q Consensus       304 ~~---~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~---~L~~~l~~~~~~v~~~al~~L~~l~~  365 (454)
                      ..   ..+++..|+.+|..++.. +.+....+.+.+...   .+..+.+..+ ..+..+++.|.|++.
T Consensus       193 ~~~~~~~~v~~~a~~~L~~ls~d-n~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~~  258 (684)
T 4gmo_A          193 SADIAPQDIYEEAISCLTTLSED-NLKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVLHNVFT  258 (684)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHHhcc-CHHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHHHhHhh
Confidence            53   357999999999999886 456666666655433   3333333333 345567788888864

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.86  E-value=9.8e-08  Score=78.24  Aligned_cols=181  Identities=16%  Similarity=0.172  Sum_probs=145.2

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      +++|+++|+.++..++.+|.++++.- +...+...-...++.++.++.+.+ ..+...|++||..+..+.+-....+.. 
T Consensus        39 ~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL~~~~y~K-  115 (265)
T 3b2a_A           39 LELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPMGSKTFLK-  115 (265)
T ss_dssp             HHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCBCHHHHHH-
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCCCHHHHHH-
Confidence            46789999999999999999999884 334444555668999999999999 999999999999999866555555543 


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF  161 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  161 (454)
                       ++.++..++.++++-++..++..++.+---. ..+ .     ++..+.+++ .+.+..++..++.++.+++....+.. 
T Consensus       116 -l~~aL~dlik~~~~il~~eaae~Lgklkv~~-~~~-~-----V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S~D~~-  185 (265)
T 3b2a_A          116 -AAKTLVSLLESPDDMMRIETIDVLSKLQPLE-DSK-L-----VRTYINELV-VSPDLYTKVAGFCLFLNMLNSSADSG-  185 (265)
T ss_dssp             -HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSC-CCH-H-----HHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGCSSCC-
T ss_pred             -HHHHHHHHhcCCCchHHHHHHHHhCcCCccc-chH-H-----HHHHHHHHH-hCCChhHHHHHHHHHHHhhcccCCHH-
Confidence             5788999999999999999999999983211 111 1     256777888 88999999999999999998753332 


Q ss_pred             hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 012897          162 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG  196 (454)
Q Consensus       162 ~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~  196 (454)
                       ....++.-+-.++++.|+.++..|+.++..+...
T Consensus       186 -i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          186 -HLTLILDEIPSLLQNDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             -CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             -HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence             3356667778899999999999999999988765

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.84  E-value=9.6e-07  Score=88.74  Aligned_cols=291  Identities=14%  Similarity=0.114  Sum_probs=196.3

Q ss_pred             HHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhc---CCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHH
Q 012897           11 SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLM---REDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF   87 (454)
Q Consensus        11 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L   87 (454)
                      ..+..|+..|.-+-....         .+++..|-+.|.   +++ +.++..|+..|+-+..+...        .++..|
T Consensus       373 ~~k~sA~aSLGlIh~g~~---------~~gl~~L~~yL~~~~s~~-~~ik~GAllaLGli~ag~~~--------~~~~lL  434 (963)
T 4ady_A          373 WAKFTATASLGVIHKGNL---------LEGKKVMAPYLPGSRASS-RFIKGGSLYGLGLIYAGFGR--------DTTDYL  434 (963)
T ss_dssp             HHHHHHHHHHHHHTSSCT---------TTHHHHHTTTSTTSCCSC-HHHHHHHHHHHHHHTTTTTH--------HHHHHH
T ss_pred             HHHHHHHHHhhhhccCch---------HHHHHHHHHhccccCCCc-HHHHHHHHHHHHHhcCCCcH--------HHHHHH
Confidence            345556666665554431         123566666776   445 89999999999999884432        146777


Q ss_pred             HHhhCCCC--------HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCC
Q 012897           88 VKLLASPS--------DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP  159 (454)
Q Consensus        88 ~~lL~~~~--------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  159 (454)
                      ...|.+++        +.++..|+..|+-+...+.  +..     ++..|...+ .+.+..++..++.+|+.+.....  
T Consensus       435 ~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~--~ee-----v~e~L~~~L-~dd~~~~~~~AalALGli~vGTg--  504 (963)
T 4ady_A          435 KNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA--NIE-----VYEALKEVL-YNDSATSGEAAALGMGLCMLGTG--  504 (963)
T ss_dssp             HHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC--CHH-----HHHHHHHHH-HTCCHHHHHHHHHHHHHHHTTCC--
T ss_pred             HHHHcCccccccccccHHHHHHHHHHHHHHhcCCC--CHH-----HHHHHHHHH-hcCCHHHHHHHHHHHhhhhcccC--
Confidence            77776544        7788899999998753332  112     256677777 33444566788888887754421  


Q ss_pred             ChhhhhchHHHHHHhh-cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc-CCCCCcchhhHHHHHhHhhc
Q 012897          160 PFDQVRPALPALAQLV-HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVT  237 (454)
Q Consensus       160 ~~~~~~~~l~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~  237 (454)
                      .    ..++..|+..+ .+.+..+++.++.+|+.+....++.         ++.++..| .+.++.+|..++.+++--..
T Consensus       505 n----~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~---------~~~li~~L~~~~dp~vRygaa~alglAya  571 (963)
T 4ady_A          505 K----PEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL---------ADDLITKMLASDESLLRYGGAFTIALAYA  571 (963)
T ss_dssp             C----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG---------GHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred             C----HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH---------HHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            1    23344444433 4567889999999999887665544         34444444 35778889998888876555


Q ss_pred             cCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHh-hhcchhhHHHHHHH
Q 012897          238 GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLL-QNAEFDIKKEAAWA  316 (454)
Q Consensus       238 ~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~a~~a  316 (454)
                      +....       ..++.|+..+.+..+..+|..|+.+|+.+..+.+         ..++.++..+ ++.++.+|..|+.+
T Consensus       572 GTGn~-------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalA  635 (963)
T 4ady_A          572 GTGNN-------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFA  635 (963)
T ss_dssp             TSCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHH
T ss_pred             CCCCH-------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            44322       2345556555444378899999999999887654         3466666644 45799999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 012897          317 ISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV  366 (454)
Q Consensus       317 L~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~  366 (454)
                      |+.+........        ++..|..+.++.++.|+..|+.+|..+...
T Consensus       636 LGli~aGn~~~~--------aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g  677 (963)
T 4ady_A          636 LGIACAGKGLQS--------AIDVLDPLTKDPVDFVRQAAMIALSMILIQ  677 (963)
T ss_dssp             HHHHTSSSCCHH--------HHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred             HHHhccCCCcHH--------HHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence            999976543211        466777888999999999999999998754

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.84  E-value=5.6e-09  Score=90.75  Aligned_cols=187  Identities=13%  Similarity=0.145  Sum_probs=140.6

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhh
Q 012897           84 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ  163 (454)
Q Consensus        84 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  163 (454)
                      -+.+.+.+.+.+...|..++..|..++...+...... -..+++.+...+.++.+..++..++.++..|+......-...
T Consensus        17 ~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~   95 (242)
T 2qk2_A           17 PKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY   95 (242)
T ss_dssp             CTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred             CHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            3457788889999999999999999875422210000 012355566666337788999999999999996532222344


Q ss_pred             hhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccC-cc-
Q 012897          164 VRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD-DF-  241 (454)
Q Consensus       164 ~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~-  241 (454)
                      ...++|.++..+.+.++.++..+..++..++....-  .     .+++.+...+.+.++.+|..++..|+.+.... +. 
T Consensus        96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~--~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~  168 (242)
T 2qk2_A           96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL--E-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPTA  168 (242)
T ss_dssp             HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH--H-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH--H-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence            577899999999999999999999999999875431  2     46778889999999999999999999976543 22 


Q ss_pred             chhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897          242 QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  280 (454)
Q Consensus       242 ~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~  280 (454)
                      .....+. .+++.+..++.+. ++.+|..|..+++.++.
T Consensus       169 ~~~~~l~-~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          169 LNKKLLK-LLTTSLVKTLNEP-DPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             CCHHHHH-HHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHH-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence            1122222 6889999999988 99999999999999885

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.83  E-value=1.4e-08  Score=88.28  Aligned_cols=185  Identities=15%  Similarity=0.217  Sum_probs=141.8

Q ss_pred             HHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhc-CCChhHHHHHHHHHHHhccCChHHHHHHHH
Q 012897          128 PLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-SNDEEVLTDACWALSYLSDGTNDKIQAVIE  206 (454)
Q Consensus       128 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  206 (454)
                      .+.+.+ .+.+...|..++..|..+....+.........+++.+...+. +.+..++..++.++..++..-.........
T Consensus        19 ~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~   97 (242)
T 2qk2_A           19 DFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS   97 (242)
T ss_dssp             THHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred             HHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            466666 677889999999999999876322111223577888999995 899999999999999998543322233332


Q ss_pred             hCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcC-CHHH
Q 012897          207 AGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQ  285 (454)
Q Consensus       207 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~-~~~~  285 (454)
                       .+++.++..+.++++.+|..+..+|..++....  .     ..+++.+...+++. ++.+|..++..|..+... .++.
T Consensus        98 -~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~-----~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~  168 (242)
T 2qk2_A           98 -ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--L-----EAQQESIVESLSNK-NPSVKSETALFIARALTRTQPTA  168 (242)
T ss_dssp             -HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--H-----HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             -HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--H-----HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCC
Confidence             688999999999999999999999999987432  1     14678889999988 999999999999997653 2321


Q ss_pred             -HHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCC
Q 012897          286 -IQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSG  323 (454)
Q Consensus       286 -~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  323 (454)
                       ....+ ..+++.+..++.+.++++|..|..+++.++..
T Consensus       169 ~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~  206 (242)
T 2qk2_A          169 LNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL  206 (242)
T ss_dssp             CCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence             12223 25789999999999999999999999998764

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.81  E-value=1.2e-06  Score=80.88  Aligned_cols=322  Identities=11%  Similarity=0.099  Sum_probs=194.9

Q ss_pred             CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCh---hhHHHHHhcCC-hHHHHHHhchhhhhhHHHHHHHHHHhhcCC
Q 012897           81 HGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSP---RCRDLVLSQGA-LIPLLAQLNERAKLSMLRNATWTLSNFCRG  155 (454)
Q Consensus        81 ~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~-i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  155 (454)
                      ..++..++.+|.. .+.++.+..+..+..+...++   .....+..... ...+.......++.-....++.++..++..
T Consensus        76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~  155 (480)
T 1ho8_A           76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN  155 (480)
T ss_dssp             STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred             chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence            4577889998875 779999999999999887765   32223222221 222333222334455556666666666544


Q ss_pred             CCCCChhhhhchHH--HHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHh--CcHHHHHHhcC----CC------
Q 012897          156 KPQPPFDQVRPALP--ALAQLVHSN-DEEVLTDACWALSYLSDGTNDKIQAVIEA--GVCPRLVELLG----HP------  220 (454)
Q Consensus       156 ~~~~~~~~~~~~l~--~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll~----~~------  220 (454)
                      ... .......++.  -+...|.+. +...+.-++.++..+......+ ..+.+.  ..++.++.++.    +.      
T Consensus       156 ~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R-~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~  233 (480)
T 1ho8_A          156 GLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYR-DVIWLHEKKFMPTLFKILQRATDSQLATRIV  233 (480)
T ss_dssp             TTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHH-HHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred             CCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHH-HHHHHcccchhHHHHHHHHHhhccccccccc
Confidence            322 3333344444  445555552 3455667888888877654432 334432  24555544332    11      


Q ss_pred             -------CCcchhhHHHHHhHhhccCccchhhhhccCCh--HHHHHhhcCCcchhHHHHHHHHHHHHhcCCH----HHHH
Q 012897          221 -------SPSVLIPALRTVGNIVTGDDFQTQCIITYGAL--PYLLGLLTHSHKKSIKKEACWTISNITAGNR----DQIQ  287 (454)
Q Consensus       221 -------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l--~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~----~~~~  287 (454)
                             ..+++..++.|++-++...+ ..+.+...++.  ..|+.+++.....++-+-++.++.|+....+    ....
T Consensus       234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~  312 (480)
T 1ho8_A          234 ATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK  312 (480)
T ss_dssp             -----CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred             cccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence                   23457889999999987544 44555554433  5667777765578899999999999998541    2223


Q ss_pred             H-HHhCCChHHHHHHhhhc---chhhHHHHHHHHHHh---------------------cCCCCHHHHHHHHHc-------
Q 012897          288 A-VIDAGLVGPLVNLLQNA---EFDIKKEAAWAISNA---------------------TSGGTHEQIKYLVRE-------  335 (454)
Q Consensus       288 ~-l~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~~l---------------------~~~~~~~~~~~l~~~-------  335 (454)
                      . ++..++ +.+++.+...   |+++....-.....+                     ....+......|+.+       
T Consensus       313 ~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e  391 (480)
T 1ho8_A          313 QLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK  391 (480)
T ss_dssp             HHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred             HHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence            2 223334 4455555542   555543322222111                     111111111122221       


Q ss_pred             ---CCcHHHhhccCC----------CCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcC
Q 012897          336 ---GCIKPLCDLFVC----------PDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH  402 (454)
Q Consensus       336 ---~~i~~L~~~l~~----------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~  402 (454)
                         .+++.|++++++          .|+.+...|+.=++.+++..+.             .+..+.+.|+-+.+.+|++|
T Consensus       392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~-------------gr~i~~~lg~K~~VM~Lm~h  458 (480)
T 1ho8_A          392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE-------------SIDVLDKTGGKADIMELLNH  458 (480)
T ss_dssp             GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT-------------HHHHHHHHSHHHHHHHHTSC
T ss_pred             cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcc-------------hhHHHHHcCcHHHHHHHhcC
Confidence               236778888873          3677888899999999987654             46688899999999999999


Q ss_pred             CCHHHHHHHHHHHHHhc
Q 012897          403 DNNEIYEKAVKILETYW  419 (454)
Q Consensus       403 ~~~~v~~~a~~~l~~~~  419 (454)
                      +|++|+..|...++.+.
T Consensus       459 ~d~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          459 SDSRVKYEALKATQAII  475 (480)
T ss_dssp             SSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999999999988764

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.78  E-value=4.7e-08  Score=84.78  Aligned_cols=190  Identities=12%  Similarity=0.170  Sum_probs=139.9

Q ss_pred             HHHhhcCCCChhHHHHHHHHHHH-hcCCCchhhHHHHh-CCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCC--hhhH-
Q 012897           44 FVEFLMREDYPQLQFEAAWALTN-IASGTSENTKVVID-HGAVPIFVKLL-ASPSDDVREQAVWALGNVAGDS--PRCR-  117 (454)
Q Consensus        44 L~~lL~~~~~~~v~~~a~~~L~~-l~~~~~~~~~~~~~-~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~--~~~~-  117 (454)
                      +.+.+.+.+ +.-|..|+..|.. ++.+.++......+ ..++..|.+.+ ++.+..++..|+.+++.++..-  +.+. 
T Consensus        21 f~~~l~s~~-w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           21 FQERITSSK-WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             HHHHHTCSS-HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             HHHHhhcCC-HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            566778888 7999999999999 87533332200001 13577788888 6889999999999999998422  2222 


Q ss_pred             HHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh-hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 012897          118 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF-DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG  196 (454)
Q Consensus       118 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~  196 (454)
                      ....  ..++.++..+ .+....++..+..++..++...+.... .....+++.+...+.+.++.++..++.+|..++..
T Consensus       100 ~y~~--~llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~  176 (249)
T 2qk1_A          100 DYVS--LVFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE  176 (249)
T ss_dssp             HHHH--HHHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHH--HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence            2221  1477888888 666788999999999988875422111 11567889999999999999999999999998865


Q ss_pred             Ch---HHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhc
Q 012897          197 TN---DKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT  237 (454)
Q Consensus       197 ~~---~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  237 (454)
                      ..   ......+...+++.+..++.++++++|..|..+++.++.
T Consensus       177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            44   333344424899999999999999999999999999885

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.78  E-value=3.9e-08  Score=85.27  Aligned_cols=191  Identities=10%  Similarity=0.084  Sum_probs=140.6

Q ss_pred             HHHHhchhhhhhHHHHHHHHHHh-hcCCCCCCC--hhhhhchHHHHHHhh-cCCChhHHHHHHHHHHHhccCCh-HHHH-
Q 012897          129 LLAQLNERAKLSMLRNATWTLSN-FCRGKPQPP--FDQVRPALPALAQLV-HSNDEEVLTDACWALSYLSDGTN-DKIQ-  202 (454)
Q Consensus       129 l~~~l~~~~~~~~~~~a~~~L~~-l~~~~~~~~--~~~~~~~l~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~-~~~~-  202 (454)
                      +.+.+ .+.+..-|..++..|.. ++...+...  ......++..+.+.+ .+.+..++..++.+++.++..-. .... 
T Consensus        21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            34445 56778889999999999 875533222  222346788888999 78899999999999999985322 1222 


Q ss_pred             HHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCC
Q 012897          203 AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN  282 (454)
Q Consensus       203 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~  282 (454)
                      .... .+++.++..+.+..+.++..+..++-.++...+.....-.-..+++.|...|+++ ++.+|..++.+|..++...
T Consensus       100 ~y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~  177 (249)
T 2qk1_A          100 DYVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEE  177 (249)
T ss_dssp             HHHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred             HHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHc
Confidence            2222 4788999999999899999999999888875432111000114678899999999 9999999999999998633


Q ss_pred             H---HHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897          283 R---DQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS  322 (454)
Q Consensus       283 ~---~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  322 (454)
                      +   ......+...++|.|..++.+.+++||..|..+++.+..
T Consensus       178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            3   333344435799999999999999999999999998865

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.60  E-value=1.6e-08  Score=78.51  Aligned_cols=119  Identities=18%  Similarity=0.152  Sum_probs=91.6

Q ss_pred             CcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHH
Q 012897          208 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ  287 (454)
Q Consensus       208 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~  287 (454)
                      ..++.+..+|.++++.+|..|+++|+.+..            ..++.|...|+++ ++.+|..|+++|+++..  +    
T Consensus        12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~--~----   72 (131)
T 1te4_A           12 SGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNE-DWRIRGAAAWIIGNFQD--E----   72 (131)
T ss_dssp             ---------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS--H----
T ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCC-CHHHHHHHHHHHHhcCC--H----
Confidence            567888999999999999999999987642            1258899999988 99999999999998853  2    


Q ss_pred             HHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHH
Q 012897          288 AVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLEN  362 (454)
Q Consensus       288 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~  362 (454)
                           ..++.|+..+.++++.||..|+++|+++..   ++         .++.|..+++++++.++..+.++|.+
T Consensus        73 -----~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---~~---------a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           73 -----RAVEPLIKLLEDDSGFVRSGAARSLEQIGG---ER---------VRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             -----HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---HH---------HHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             -----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---HH---------HHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                 247788899999999999999999999852   22         46778888899999999999988764

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.55  E-value=8.6e-06  Score=85.34  Aligned_cols=377  Identities=10%  Similarity=0.060  Sum_probs=213.5

Q ss_pred             CCHHHHHHHHHHHHHHhccCC---------CCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCC-CchhhHH
Q 012897            8 DDSSLQLEATTQFRKLLSIER---------SPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG-TSENTKV   77 (454)
Q Consensus         8 ~d~~~~~~a~~~L~~l~~~~~---------~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~   77 (454)
                      .+..+|..|+..|++.+...-         ++..+..++.    .++..+.+.+ +.+|..++.++..++.. .++..  
T Consensus        49 ~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~----~ll~~l~~~~-~~ir~~l~~~ia~ia~~d~p~~W--  121 (960)
T 1wa5_C           49 LPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKK----EIVPLMISLP-NNLQVQIGEAISSIADSDFPDRW--  121 (960)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHH----HHHHHHHHSC-HHHHHHHHHHHHHHHHHHSTTTC--
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHH----HHHHHHHhCC-HHHHHHHHHHHHHHHHhhCccch--
Confidence            468999999999999875420         1123333343    3455555566 89999999999999872 11111  


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC------hhhHHHHH--hcCChHHHHHH-------hchh-hh---
Q 012897           78 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS------PRCRDLVL--SQGALIPLLAQ-------LNER-AK---  138 (454)
Q Consensus        78 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~------~~~~~~~~--~~~~i~~l~~~-------l~~~-~~---  138 (454)
                         .++++.|++.+.++++..+..++.++..++...      +..+..+.  -....+.++++       +... .+   
T Consensus       122 ---p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~  198 (960)
T 1wa5_C          122 ---PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKAS  198 (960)
T ss_dssp             ---TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHH
T ss_pred             ---hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence               357899999998888888999999999998522      11221110  01123333333       3221 11   


Q ss_pred             ----hhHHHHHHHHHHhhcCCC-CCCChhhhhchHHHHHHhhcCC------C---------hhHHHHHHHHHHHhccCCh
Q 012897          139 ----LSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSN------D---------EEVLTDACWALSYLSDGTN  198 (454)
Q Consensus       139 ----~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~------~---------~~v~~~a~~~L~~l~~~~~  198 (454)
                          .++...++.+++.+.... +..........++.+..++...      +         ..++..++.++..+....+
T Consensus       199 ~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~  278 (960)
T 1wa5_C          199 LNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYE  278 (960)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHH
Confidence                133445667777665432 1111112244556666666431      1         2467888888888876555


Q ss_pred             HHHHHHHHhCcHHHHHHhcC-----CCCCcchhhHHHHHhHhhccCccchhhhhc-cCChH-----HHHHhhcC------
Q 012897          199 DKIQAVIEAGVCPRLVELLG-----HPSPSVLIPALRTVGNIVTGDDFQTQCIIT-YGALP-----YLLGLLTH------  261 (454)
Q Consensus       199 ~~~~~~~~~~~i~~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~-----~L~~~L~~------  261 (454)
                      ......+. .+++..+..+.     ...+.++..++..+..++.... .. .++. ...++     .++..|.-      
T Consensus       279 ~~f~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~-~~-~~~~~~~~l~~li~~~i~~~m~~~~~d~e  355 (960)
T 1wa5_C          279 DVFGPMIN-EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPK-YF-EIFNNESAMNNITEQIILPNVTLREEDVE  355 (960)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHH-HH-GGGCSHHHHHHHHHHTHHHHHSCCGGGTT
T ss_pred             HHHHHHHH-HHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHh-HH-HHHcCchHHHHHHHHHhHHhcCCCHHHHH
Confidence            44333222 44555555553     2345678888888888775322 11 1221 12222     33333310      


Q ss_pred             ----------------CcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhh------hcchhhHHHHHHHHHH
Q 012897          262 ----------------SHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQ------NAEFDIKKEAAWAISN  319 (454)
Q Consensus       262 ----------------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~------~~~~~v~~~a~~aL~~  319 (454)
                                      ......|..|..+|..++...++..-.    .+++.+.+.+.      +.++..|..|+.+++.
T Consensus       356 ~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~~----~~l~~i~~~l~~~~~~~~~~w~~reaal~alga  431 (960)
T 1wa5_C          356 LFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTN----IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTA  431 (960)
T ss_dssp             TTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHHHHHC----CHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhHHH----HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence                            001246778888888887644432211    13444444554      4567889999999999


Q ss_pred             hcCCCC-HH----------HHHHHHHcCCcHHHhhccCCC---CHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHH
Q 012897          320 ATSGGT-HE----------QIKYLVREGCIKPLCDLFVCP---DPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQ  385 (454)
Q Consensus       320 l~~~~~-~~----------~~~~l~~~~~i~~L~~~l~~~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~  385 (454)
                      ++..+. ..          ....+....+++    .+.++   ++.++..+++++..+...-..               .
T Consensus       432 ia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p----~l~~~~~~~p~vr~~a~~~lg~~~~~~~~---------------~  492 (960)
T 1wa5_C          432 LAINGNITNAGVSSTNNLLNVVDFFTKEIAP----DLTSNNIPHIILRVDAIKYIYTFRNQLTK---------------A  492 (960)
T ss_dssp             HHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH----HHHCSSCSCHHHHHHHHHHHHHTGGGSCH---------------H
T ss_pred             HHHHhccccCCcccccccccHHHHHHHHhHH----HhcCCCCCCceehHHHHHHHHHHHhhCCH---------------H
Confidence            975421 00          111221112233    33444   889999999999998754211               1


Q ss_pred             HHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC
Q 012897          386 LVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEE  422 (454)
Q Consensus       386 ~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~  422 (454)
                      .+  ...++.+.+.+.++++.|+..|...+.++....
T Consensus       493 ~l--~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~  527 (960)
T 1wa5_C          493 QL--IELMPILATFLQTDEYVVYTYAAITIEKILTIR  527 (960)
T ss_dssp             HH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCB
T ss_pred             HH--HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcc
Confidence            11  122445555566778999999999999988754

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.54  E-value=2.2e-08  Score=77.66  Aligned_cols=122  Identities=19%  Similarity=0.191  Sum_probs=93.4

Q ss_pred             HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh
Q 012897           37 QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC  116 (454)
Q Consensus        37 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  116 (454)
                      ....++.+..+|++++ +.+|..|+++|+.+..            ..++.|+.+|+++++.+|..++++|+++..  +. 
T Consensus        10 ~~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~~-   73 (131)
T 1te4_A           10 HSSGLVPRGSHMADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--ER-   73 (131)
T ss_dssp             -----------CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--HH-
T ss_pred             ccccHHHHHHHhcCCC-HHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--HH-
Confidence            3456888999999988 8999999999887643            126899999999999999999999999852  11 


Q ss_pred             HHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHh
Q 012897          117 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYL  193 (454)
Q Consensus       117 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l  193 (454)
                              .++.|...+ .++++.++..++++|..+..          ...++.|..+++++++.++..++.+|..+
T Consensus        74 --------a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           74 --------AVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             --------HHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             --------HHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                    377888888 78889999999999999863          36789999999999999999999988653

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.51  E-value=8.5e-06  Score=85.37  Aligned_cols=340  Identities=9%  Similarity=0.015  Sum_probs=193.4

Q ss_pred             cccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc------hhhHH
Q 012897            4 GVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS------ENTKV   77 (454)
Q Consensus         4 ~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~------~~~~~   77 (454)
                      .+.++++.+|...+.++..++...-+.     -..++++.|++++++++ +..+..++.+|..++....      +.+..
T Consensus        93 ~l~~~~~~ir~~l~~~ia~ia~~d~p~-----~Wp~ll~~L~~~l~s~~-~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~  166 (960)
T 1wa5_C           93 LMISLPNNLQVQIGEAISSIADSDFPD-----RWPTLLSDLASRLSNDD-MVTNKGVLTVAHSIFKRWRPLFRSDELFLE  166 (960)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHHHSTT-----TCTTHHHHHHTTCCSSC-TTHHHHHHHHHHHHHGGGTTSCCCHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHhhCcc-----chhHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhcChHHHHH
Confidence            344455788888888888888753111     12567999999999887 7889999999999987221      22221


Q ss_pred             HH--hCCChHHHHH-------hhCCCCH---------HHHHHHHHHHHHhhC-CChhhHHHHHhcCChHHHHHHhchh--
Q 012897           78 VI--DHGAVPIFVK-------LLASPSD---------DVREQAVWALGNVAG-DSPRCRDLVLSQGALIPLLAQLNER--  136 (454)
Q Consensus        78 ~~--~~g~i~~L~~-------lL~~~~~---------~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~l~~~l~~~--  136 (454)
                      +.  -....+.++.       .+.++..         .+...++.++..+.. +.+..-...+ ...++.+.+++...  
T Consensus       167 l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~~p  245 (960)
T 1wa5_C          167 IKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI-QVGMGIFHKYLSYSNP  245 (960)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH-HHHHHHHHHHHSCCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH-HHHHHHHHHHHcCCCC
Confidence            10  0112333333       2444221         233346666666542 2222111100 11234444544221  


Q ss_pred             ---h---------hhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhc-----CCChhHHHHHHHHHHHhccCChH
Q 012897          137 ---A---------KLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-----SNDEEVLTDACWALSYLSDGTND  199 (454)
Q Consensus       137 ---~---------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~  199 (454)
                         .         ...++..++.++..+....+..-......+++.+...+.     ..++.++..++..+..++.....
T Consensus       246 ~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~  325 (960)
T 1wa5_C          246 LLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKY  325 (960)
T ss_dssp             CCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHH
T ss_pred             cccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhH
Confidence               0         124677888888877754321111233455666666664     34678889999999888754221


Q ss_pred             HHH-----HHHHhCcH-HHHHHhcC-----------------------CCCCcchhhHHHHHhHhhccCccchhhhhccC
Q 012897          200 KIQ-----AVIEAGVC-PRLVELLG-----------------------HPSPSVLIPALRTVGNIVTGDDFQTQCIITYG  250 (454)
Q Consensus       200 ~~~-----~~~~~~~i-~~L~~ll~-----------------------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  250 (454)
                      . .     ..+. .++ +.++..+.                       +.....|..|..+|..++...+   +.++. .
T Consensus       326 ~-~~~~~~~~l~-~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~---~~v~~-~  399 (960)
T 1wa5_C          326 F-EIFNNESAMN-NITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE---VLVTN-I  399 (960)
T ss_dssp             H-GGGCSHHHHH-HHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH---HHHHH-H
T ss_pred             H-HHHcCchHHH-HHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc---hhHHH-H
Confidence            1 1     1111 222 22333331                       1112567788888888886433   11211 2


Q ss_pred             ChHHHHHhhc------CCcchhHHHHHHHHHHHHhcCC--HH----------HHHHHHhCCChHHHHHHhhhc---chhh
Q 012897          251 ALPYLLGLLT------HSHKKSIKKEACWTISNITAGN--RD----------QIQAVIDAGLVGPLVNLLQNA---EFDI  309 (454)
Q Consensus       251 ~l~~L~~~L~------~~~~~~v~~~a~~~L~nl~~~~--~~----------~~~~l~~~~~i~~L~~ll~~~---~~~v  309 (454)
                      +++.+...+.      +. ++..|..|..+++.++.+.  ..          ....++.    ..++..+.+.   ++.+
T Consensus       400 ~l~~i~~~l~~~~~~~~~-~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~----~~v~p~l~~~~~~~p~v  474 (960)
T 1wa5_C          400 FLAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFT----KEIAPDLTSNNIPHIIL  474 (960)
T ss_dssp             HHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHH----HHTHHHHHCSSCSCHHH
T ss_pred             HHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHH----HHhHHHhcCCCCCCcee
Confidence            3445555554      44 6788999999999997531  10          1112111    1223334555   8899


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 012897          310 KKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV  366 (454)
Q Consensus       310 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~  366 (454)
                      |..|+|+++.++..-.++...     .+++.++..+.++++.|+..|+.+|.+++..
T Consensus       475 r~~a~~~lg~~~~~~~~~~l~-----~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          475 RVDAIKYIYTFRNQLTKAQLI-----ELMPILATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             HHHHHHHHHHTGGGSCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHhhCCHHHHH-----HHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence            999999999998865443322     2677888888888899999999999999874

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.48  E-value=3.6e-05  Score=71.10  Aligned_cols=295  Identities=17%  Similarity=0.147  Sum_probs=174.9

Q ss_pred             cCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHH--HHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC-
Q 012897            6 WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP--RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG-   82 (454)
Q Consensus         6 ~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~--~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g-   82 (454)
                      ..+|+-.+..|...+..+++.. ....+..  ...+.  -++..|......+.+..++.+|..+.. .++.|..+.+.+ 
T Consensus       135 ~~dd~~~ll~a~~l~~ll~~~~-~~~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~  210 (480)
T 1ho8_A          135 KGDFQTVLISGFNVVSLLVQNG-LHNVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEK  210 (480)
T ss_dssp             CSSHHHHHHHHHHHHHHHTSTT-TCCHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHH
T ss_pred             cccchHHHHHHHHHHHHHhccC-CccHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHccc
Confidence            4555666667766666665443 2221111  11233  455566654325667788999999998 788888887653 


Q ss_pred             -ChHHHHHhhC----C-------------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCCh--HHHHHHhchhhhhhHH
Q 012897           83 -AVPIFVKLLA----S-------------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGAL--IPLLAQLNERAKLSML  142 (454)
Q Consensus        83 -~i~~L~~lL~----~-------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i--~~l~~~l~~~~~~~~~  142 (454)
                       .++.++..+.    +             ....++-+++.+++-++... ...+.+...+..  ..++..+.....+.+.
T Consensus       211 ~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~-~~~~~l~~~~i~~~~~L~~i~k~s~KEKvv  289 (480)
T 1ho8_A          211 KFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNP-VFANELVQKYLSDFLDLLKLVKITIKEKVS  289 (480)
T ss_dssp             HHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSH-HHHHHHHTTSHHHHHHHHHHHHHCCSHHHH
T ss_pred             chhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCH-HHHHHHHhcchHHHHHHHHHHHhhccchhH
Confidence             3566654332    1             13667888999999997544 455555555432  5666777667789999


Q ss_pred             HHHHHHHHhhcCCCCCCCh------hhhhchHHHHHHhhcC---CChhHHHHHHHHHHHhc---cC---ChHHHHHHHHh
Q 012897          143 RNATWTLSNFCRGKPQPPF------DQVRPALPALAQLVHS---NDEEVLTDACWALSYLS---DG---TNDKIQAVIEA  207 (454)
Q Consensus       143 ~~a~~~L~~l~~~~~~~~~------~~~~~~l~~l~~ll~~---~~~~v~~~a~~~L~~l~---~~---~~~~~~~~~~~  207 (454)
                      +-++.++.|+....+....      .....+++ ++..|..   .|+++....-.....+.   ..   .++....+. .
T Consensus       290 Rv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~-s  367 (480)
T 1ho8_A          290 RLCISIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELD-S  367 (480)
T ss_dssp             HHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHH-H
T ss_pred             HHHHHHHHHHhcccchhhhhHHHHHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHh-c
Confidence            9999999999986532111      11133433 4444432   35555443322222111   10   011111111 1


Q ss_pred             CcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcC---------CcchhHHHHHHHHHHHH
Q 012897          208 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH---------SHKKSIKKEACWTISNI  278 (454)
Q Consensus       208 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~---------~~~~~v~~~a~~~L~nl  278 (454)
                      |       .|.- +|..+....| -.|.....+..      ..+++.|.++|++         +.++.+..-||.-++.+
T Consensus       368 G-------~L~W-SP~H~se~FW-~ENa~kf~e~~------~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digef  432 (480)
T 1ho8_A          368 K-------LLCW-SPPHVDNGFW-SDNIDEFKKDN------YKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHV  432 (480)
T ss_dssp             T-------CCCC-CGGGGCHHHH-HHHSGGGSSGG------GHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred             C-------Cccc-CCCccchhHH-HHHHHHHHhcc------hHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHH
Confidence            1       1211 1222222222 12222222211      2457789999974         23678889999999999


Q ss_pred             hcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897          279 TAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS  322 (454)
Q Consensus       279 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  322 (454)
                      +...|..+..+-+.|+-..+++++.+++++||.+|+.|+..+..
T Consensus       433 vr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          433 VELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  476 (480)
T ss_dssp             HHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            99878877767678999999999999999999999999988754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.46  E-value=1.1e-05  Score=82.23  Aligned_cols=287  Identities=14%  Similarity=0.167  Sum_probs=195.2

Q ss_pred             HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC---chhhHHHHhCCChHH
Q 012897           10 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT---SENTKVVIDHGAVPI   86 (454)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~g~i~~   86 (454)
                      ..-+..|+..+..+..+.....   .+..+++..+.+.+.+.. ..  +.|+.++..++...   +..-..++  +.++.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~   99 (986)
T 2iw3_A           28 ADNRHEIASEVASFLNGNIIEH---DVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPA   99 (986)
T ss_dssp             TTTHHHHHHHHHHHHTSSCSSS---SCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHH
T ss_pred             hhHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHH
Confidence            4445667777777766431111   111256778888888776 33  89999999999532   22223333  67899


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhh
Q 012897           87 FVKLLASPSDDVREQAVWALGNVAGD-SPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVR  165 (454)
Q Consensus        87 L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  165 (454)
                      ++..+.+....+|..|-.++..++.. ++.....     .++.++..+.....-..+..|+.++..|+...+..-.....
T Consensus       100 ~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~-----~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~  174 (986)
T 2iw3_A          100 ICTNAGNKDKEIQSVASETLISIVNAVNPVAIKA-----LLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMP  174 (986)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHH-----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             HHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHH-----HHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhcc
Confidence            99999888889999888887777643 3322222     47888888854446788999999999999765333333457


Q ss_pred             chHHHHHHhhcCCChhHHHHHHHHHHHhccCChH-HHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchh
Q 012897          166 PALPALAQLVHSNDEEVLTDACWALSYLSDGTND-KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ  244 (454)
Q Consensus       166 ~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  244 (454)
                      .++|.+...+.+..+++...+..++..+|..-.. -+.     ..+|.|+..+.+++.  ...++..|+.-+.-......
T Consensus       175 ~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~-----~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~  247 (986)
T 2iw3_A          175 ELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE-----RFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPA  247 (986)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG-----GGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHH
T ss_pred             chhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh-----hhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecch
Confidence            8899999999999999999999998888742111 111     578899999987743  44445555444322211111


Q ss_pred             hhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc--CCHHHHHHHHhCCChHHHHHHhhh-cchhhHHHHHHHHHHh
Q 012897          245 CIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA--GNRDQIQAVIDAGLVGPLVNLLQN-AEFDIKKEAAWAISNA  320 (454)
Q Consensus       245 ~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l  320 (454)
                      . + .-.+|.|..-|... ...+++.++-++.|+|.  .++.....++ ...+|.+....+. .+|++|..+..|+..+
T Consensus       248 ~-l-~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l  322 (986)
T 2iw3_A          248 T-L-SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTL  322 (986)
T ss_dssp             H-H-HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred             h-H-HHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence            0 0 12346666667766 77888999999999998  6777777776 5678888877765 4899998888888777

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.45  E-value=3.8e-05  Score=78.28  Aligned_cols=304  Identities=16%  Similarity=0.158  Sum_probs=204.2

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC---hhhH
Q 012897           41 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS---PRCR  117 (454)
Q Consensus        41 l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~---~~~~  117 (454)
                      +..+++.+...+ ..-+..++..+.++........  ....+++..+.+.+.+....  +.|+.++..+|...   +...
T Consensus        16 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e   90 (986)
T 2iw3_A           16 LEELFQKLSVAT-ADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVE   90 (986)
T ss_dssp             HHHHHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTH
T ss_pred             HHHHHhhccccc-hhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcc
Confidence            333555565544 4445677777777765331111  11125778888888764333  88999999998433   2222


Q ss_pred             HHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccC
Q 012897          118 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN-DEEVLTDACWALSYLSDG  196 (454)
Q Consensus       118 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~v~~~a~~~L~~l~~~  196 (454)
                      ..++  +.++.++..+ .+....|+..|-.++..+...-   .......++|.++..+.+. ....+..++.++..++..
T Consensus        91 ~~~~--~~~~~~~~~~-~dk~~~v~~aa~~~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~  164 (986)
T 2iw3_A           91 PYIV--QLVPAICTNA-GNKDKEIQSVASETLISIVNAV---NPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDA  164 (986)
T ss_dssp             HHHH--TTHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHS---CGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred             cchH--HHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence            2332  4678888887 5666789998888888887653   2223377899999988765 689999999999999976


Q ss_pred             ChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHH
Q 012897          197 TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS  276 (454)
Q Consensus       197 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~  276 (454)
                      .+.+...-+ .+++|.+...+.+..+++..+|..++..+|..-. +..   -...++.|++.+.++ +.  ..++...|+
T Consensus       165 ~~~~~~~~~-~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~-n~d---~~~~~~~~~~~~~~p-~~--~~~~~~~l~  236 (986)
T 2iw3_A          165 AKDQVALRM-PELIPVLSETMWDTKKEVKAAATAAMTKATETVD-NKD---IERFIPSLIQCIADP-TE--VPETVHLLG  236 (986)
T ss_dssp             SHHHHHHHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCC-CTT---TGGGHHHHHHHHHCT-TH--HHHHHHHHT
T ss_pred             hHHHHHHhc-cchhcchHhhcccCcHHHHHHHHHHHHHHHhcCC-Ccc---hhhhHHHHHHHhcCh-hh--hHHHHHHhh
Confidence            665544333 3789999999999999999999999998886322 111   015688999999877 33  233333333


Q ss_pred             HHhc--C-CHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCC-CHHHHHHHHHcCCcHHHhhccC-CCCHH
Q 012897          277 NITA--G-NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG-THEQIKYLVREGCIKPLCDLFV-CPDPR  351 (454)
Q Consensus       277 nl~~--~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~l~~~~~i~~L~~~l~-~~~~~  351 (454)
                      .-+.  . .....     .-++|.|.+-|......+++.++..+.||+.-- ++.....+ -..+++.|....+ ..+|+
T Consensus       237 ~~tfv~~v~~~~l-----~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f-~~~l~p~~~~~~~~~~~pe  310 (986)
T 2iw3_A          237 ATTFVAEVTPATL-----SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPF-LGKLLPGLKSNFATIADPE  310 (986)
T ss_dssp             TCCCCSCCCHHHH-----HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHH-HTTTHHHHHHHTTTCCSHH
T ss_pred             cCeeEeeecchhH-----HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhh-hhhhhhHHHHHhhccCCHH
Confidence            2221  1 11111     124677778888888899999999999998854 34333332 3457777777665 47899


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 012897          352 IVTVCLEGLENILKVGEA  369 (454)
Q Consensus       352 v~~~al~~L~~l~~~~~~  369 (454)
                      +|..+-.++..+.+.+..
T Consensus       311 ~r~~~~~a~~~l~~~~~~  328 (986)
T 2iw3_A          311 AREVTLRALKTLRRVGNV  328 (986)
T ss_dssp             HHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhhcc
Confidence            999999999888776554

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.41  E-value=2.4e-05  Score=82.13  Aligned_cols=329  Identities=11%  Similarity=0.009  Sum_probs=182.5

Q ss_pred             HHHHHHHHHHHHHhcc-CCCCcHHHHHHcCCHHHHHHhhc----------------CCCChhHHHHHHHHHHHhcCCCc-
Q 012897           11 SLQLEATTQFRKLLSI-ERSPPIEEVIQSGVVPRFVEFLM----------------REDYPQLQFEAAWALTNIASGTS-   72 (454)
Q Consensus        11 ~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~~l~~L~~lL~----------------~~~~~~v~~~a~~~L~~l~~~~~-   72 (454)
                      .++..+++++...+.. . .+..   .....++.+.. |.                +++ ++++..|+.++..+....+ 
T Consensus       204 ~~~~~al~~l~~~~~~~~-ip~~---~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~l~~i~~~~~~  277 (971)
T 2x1g_F          204 SNMNRAVKCVGTWIKNIG-YTIE---GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADE-NELAESCLKTMVNIIIQPDC  277 (971)
T ss_dssp             HHHHHHHHHHHHHHHHSC-CCGG---GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHH-HHHHHHHHHHHHHHHHCSGG
T ss_pred             hHHHHHHHHHHHHHhhCC-cCcc---ccccHHHHHHh-hhhhhccccccccccccCcCC-cHHHHHHHHHHHHHHcCccc
Confidence            6788888888877662 1 1111   23445666665 41                134 7899999999999987322 


Q ss_pred             hhhHHHHhCCChHHHHH-------hhCCCC---HHHHHHHHHHHHHhhCCChhh-H-----------HHHHhcCChHHHH
Q 012897           73 ENTKVVIDHGAVPIFVK-------LLASPS---DDVREQAVWALGNVAGDSPRC-R-----------DLVLSQGALIPLL  130 (454)
Q Consensus        73 ~~~~~~~~~g~i~~L~~-------lL~~~~---~~v~~~a~~~L~~l~~~~~~~-~-----------~~~~~~~~i~~l~  130 (454)
                      ..+...+. .+++.++.       .+...+   ++.....++.+..++...... .           ..+  ...++.++
T Consensus       278 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll  354 (971)
T 2x1g_F          278 HNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILV--HRIVQEIL  354 (971)
T ss_dssp             GGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHH--HHHHHHHH
T ss_pred             cccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHH--HHHHHHHH
Confidence            11111111 12333332       223344   367767777777766332211 1           111  01233444


Q ss_pred             HHhch----hhhhhHHHHHHHHHHhhcCCC--------CCCCh----hhhhchHHHHHHhhcCCCh--------------
Q 012897          131 AQLNE----RAKLSMLRNATWTLSNFCRGK--------PQPPF----DQVRPALPALAQLVHSNDE--------------  180 (454)
Q Consensus       131 ~~l~~----~~~~~~~~~a~~~L~~l~~~~--------~~~~~----~~~~~~l~~l~~ll~~~~~--------------  180 (454)
                      .....    ..++++...+++.+..++...        .....    .....+++.++..+..+++              
T Consensus       355 ~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f  434 (971)
T 2x1g_F          355 HCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECF  434 (971)
T ss_dssp             HHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHH
T ss_pred             HHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHH
Confidence            43311    246788889998887776511        01111    1223444555544432211              


Q ss_pred             -hHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhcCC-----CCCcchhhHHHHHhHhhccCccchhhhhccCChH
Q 012897          181 -EVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLGH-----PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALP  253 (454)
Q Consensus       181 -~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~  253 (454)
                       ..|..+..++..++.... ....     .+++.+...+..     .++..++.++.+++.++.+......     ..++
T Consensus       435 ~~~R~~~~~~l~~~~~~~~~~~l~-----~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-----~~l~  504 (971)
T 2x1g_F          435 RCYRQDISDTFMYCYDVLNDYILE-----ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-----RQIP  504 (971)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHHHH-----HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-----HHHH
Confidence             245666667766665433 1112     122223333322     6788899999999999886553221     2333


Q ss_pred             HHHHhh---c--CCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHH
Q 012897          254 YLLGLL---T--HSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQ  328 (454)
Q Consensus       254 ~L~~~L---~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~  328 (454)
                      .++.++   .  +. ++.+|..++|+++.++..-....+.+  ..+++.++..+ +  +.|+..|++++.+++.......
T Consensus       505 ~l~~~l~~l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l  578 (971)
T 2x1g_F          505 RLMRVLAEIPYEKL-NVKLLGTALETMGSYCNWLMENPAYI--PPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQL  578 (971)
T ss_dssp             HHHHHHHHSCTTTS-CHHHHHHHHHHHHHTHHHHC----CH--HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHhcCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhc
Confidence            333332   2  34 78999999999999885211111111  13566666666 2  8899999999999997554433


Q ss_pred             HHHHHHcCCcHHHhhccCC--CCHHHHHHHHHHHHHHHHh
Q 012897          329 IKYLVREGCIKPLCDLFVC--PDPRIVTVCLEGLENILKV  366 (454)
Q Consensus       329 ~~~l~~~~~i~~L~~~l~~--~~~~v~~~al~~L~~l~~~  366 (454)
                      ..++  ..++..+..++..  -+.+.+..++.++..++..
T Consensus       579 ~p~~--~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~  616 (971)
T 2x1g_F          579 KPYA--DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL  616 (971)
T ss_dssp             HHHH--HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred             cccH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence            3332  2467777777776  3578888999999999864

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.38  E-value=2.9e-05  Score=81.56  Aligned_cols=397  Identities=11%  Similarity=0.073  Sum_probs=207.4

Q ss_pred             CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHh-------hcCCCC--hhHHHHHHHHHHHhcCCCchhh---
Q 012897            8 DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEF-------LMREDY--PQLQFEAAWALTNIASGTSENT---   75 (454)
Q Consensus         8 ~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~l-------L~~~~~--~~v~~~a~~~L~~l~~~~~~~~---   75 (454)
                      ++++++..|+.++..++...........+. .+++.++.+       +...+.  ++.....++.+..++.......   
T Consensus       256 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~  334 (971)
T 2x1g_F          256 DENELAESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSG  334 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468899999999999997631111111111 123333332       233331  2666667777776664222111   


Q ss_pred             ---------HHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCC---------ChhhHHHHHh--cCChHHHH
Q 012897           76 ---------KVVIDHGAVPIFVKLLAS-----PSDDVREQAVWALGNVAGD---------SPRCRDLVLS--QGALIPLL  130 (454)
Q Consensus        76 ---------~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~---------~~~~~~~~~~--~~~i~~l~  130 (454)
                               ..+  ..+++.++.+...     .++++...+++.+..++..         .+........  ...++.++
T Consensus       335 ~~~~~~~~~~~l--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~  412 (971)
T 2x1g_F          335 ITSADPELSILV--HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILV  412 (971)
T ss_dssp             HHTCCHHHHHHH--HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH
T ss_pred             hccCcccccHHH--HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence                     111  1456666666533     4788899999888777531         1111111110  12344444


Q ss_pred             HHhchhhh--------------hhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcC-----CChhHHHHHHHHHH
Q 012897          131 AQLNERAK--------------LSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS-----NDEEVLTDACWALS  191 (454)
Q Consensus       131 ~~l~~~~~--------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~-----~~~~v~~~a~~~L~  191 (454)
                      ..+....+              ...|..+..++..++...+   ......+++.+...+.+     .+...++.++.+++
T Consensus       413 ~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~  489 (971)
T 2x1g_F          413 RKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN---DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQ  489 (971)
T ss_dssp             HHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT---THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred             HHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence            44421111              1355667777777775422   23333444455555543     57788999999999


Q ss_pred             HhccCChHHHHHHHHhCcHHHHHHhcC-CCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHH
Q 012897          192 YLSDGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKE  270 (454)
Q Consensus       192 ~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~  270 (454)
                      .++..........+. .+++.+..+.. ++++.+|..++++++.++..-....+ .+ ..+++.++..|.    +.++..
T Consensus       490 ~iae~~~~~~~~~l~-~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~l-~~vl~~l~~~l~----~~v~~~  562 (971)
T 2x1g_F          490 SVAEHFGGEEKRQIP-RLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-YI-PPAINLLVRGLN----SSMSAQ  562 (971)
T ss_dssp             HTTTC------CHHH-HHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH-HHHHHHHHHHHH----SSCHHH
T ss_pred             HHHhhcChhhhHHHH-HHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-HH-HHHHHHHHHHhC----hHHHHH
Confidence            998765433221111 23332222221 34788999999999999863221111 11 134566666662    578999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc--chhhHHHHHHHHHHhcCCCC-HHHHHHHHH--cCCcHHHhhcc
Q 012897          271 ACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDIKKEAAWAISNATSGGT-HEQIKYLVR--EGCIKPLCDLF  345 (454)
Q Consensus       271 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~--~~~i~~L~~~l  345 (454)
                      |++++.+++..........+ ..++..+..++..+  +...+..+..+++.++...+ .+...++..  ..++..+...+
T Consensus       563 A~~al~~l~~~~~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~  641 (971)
T 2x1g_F          563 ATLGLKELCRDCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAIC  641 (971)
T ss_dssp             HHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999975555544444 34677777777763  57888899999999876432 233333322  12333333444


Q ss_pred             CCC--CHHH---HHHHHHHHHHHHHhhhhhhhccCCc-ccccHHHHHHHHhccHHHHHHHhc--CCCHHHHHHHHHHHHH
Q 012897          346 VCP--DPRI---VTVCLEGLENILKVGEAEKNMGTAT-ADVNQYAQLVEEAEGLEKIENLQS--HDNNEIYEKAVKILET  417 (454)
Q Consensus       346 ~~~--~~~v---~~~al~~L~~l~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~~~l~~l~~--~~~~~v~~~a~~~l~~  417 (454)
                      +..  +++-   ...++..|..++..-.........+ ...+.+...+  ...++.+..+..  ..++++.+.+..++..
T Consensus       642 ~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~  719 (971)
T 2x1g_F          642 QADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVM--QRTMPIFKRIAEMWVEEIDVLEAACSAMKH  719 (971)
T ss_dssp             TC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHH--HTTHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             hcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHH--HHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            433  3322   2334555555554322100000000 0001112222  345566665543  2467888888888877


Q ss_pred             hcC
Q 012897          418 YWL  420 (454)
Q Consensus       418 ~~~  420 (454)
                      +..
T Consensus       720 ~~~  722 (971)
T 2x1g_F          720 AIT  722 (971)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.18  E-value=2e-05  Score=69.12  Aligned_cols=188  Identities=11%  Similarity=0.081  Sum_probs=139.6

Q ss_pred             HHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHH-h
Q 012897          213 LVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI-D  291 (454)
Q Consensus       213 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~  291 (454)
                      ++..|.+.+.+.+..++.-|..+..........++..+++..|+.+.... +..++..++.++.++... ......++ .
T Consensus       123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~-v~Gm~gvvs~  200 (339)
T 3dad_A          123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLF-VDGMLGVVAH  200 (339)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTS-HHHHHHHHHC
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhc-cccccchhCC
Confidence            33444456667788888888885555566788899999999999999998 999999999999999875 44454555 4


Q ss_pred             CCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHH--------c--CCcHHHhhccC---CCCHHHHHHHHH
Q 012897          292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVR--------E--GCIKPLCDLFV---CPDPRIVTVCLE  358 (454)
Q Consensus       292 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~--------~--~~i~~L~~~l~---~~~~~v~~~al~  358 (454)
                      ..+|..+..++.+.+..|.+.|+..|..++...+. ....+.+        .  .....|+..++   ..|.+++..++.
T Consensus       201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~-~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt  279 (339)
T 3dad_A          201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSEN-NAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT  279 (339)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcc-cchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence            56788899999988899999999999999876521 1111111        1  23778899997   788999999999


Q ss_pred             HHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCC--CHHHHHH
Q 012897          359 GLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHD--NNEIYEK  410 (454)
Q Consensus       359 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~--~~~v~~~  410 (454)
                      .+..++...+...       ....+...+.+.|.-..+.+.+...  ++++++.
T Consensus       280 LIN~lL~~apd~d-------~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          280 LINKTLAALPDQD-------SFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHCSSHH-------HHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHhcCCChh-------HHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            9999988765332       1234677788888777788866555  6666544

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=98.16  E-value=0.00023  Score=74.25  Aligned_cols=338  Identities=10%  Similarity=0.081  Sum_probs=183.7

Q ss_pred             CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHH-HhhcCCCChhHHHHHHHHHHHhcCCC---c--hhhHHHHh
Q 012897            7 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFV-EFLMREDYPQLQFEAAWALTNIASGT---S--ENTKVVID   80 (454)
Q Consensus         7 s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~-~lL~~~~~~~v~~~a~~~L~~l~~~~---~--~~~~~~~~   80 (454)
                      +.++++...+++++...++-   -....+++.++++.+. .++.  + +.++..|+.||..+....   +  .....+..
T Consensus       206 ~~~~~l~~~~L~~l~s~l~W---I~i~~i~~~~ll~~l~~~~L~--~-~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~  279 (1023)
T 4hat_C          206 GASSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL  279 (1023)
T ss_dssp             CSSCHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHh---CCHHHhcchhHHHHHHHHHcC--C-HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence            35667777888888887753   2356677888999999 8875  4 789999999999998722   2  11111110


Q ss_pred             --CCChHHH--------------HHhhCCCCHHHHHHHHHHHHHhhC-------CChhhHHHHHhcCChHHHHHHhchhh
Q 012897           81 --HGAVPIF--------------VKLLASPSDDVREQAVWALGNVAG-------DSPRCRDLVLSQGALIPLLAQLNERA  137 (454)
Q Consensus        81 --~g~i~~L--------------~~lL~~~~~~v~~~a~~~L~~l~~-------~~~~~~~~~~~~~~i~~l~~~l~~~~  137 (454)
                        .+.++.+              ...-...+.+.....++.+..+..       ..+..+..+.  .++..++... ..+
T Consensus       280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~  356 (1023)
T 4hat_C          280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE  356 (1023)
T ss_dssp             HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred             HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence              0111111              111122345666666666655432       1122122211  1123344433 445


Q ss_pred             hhhHHHHHHHHHHhhcCCC--CCCChhhhh----chHHHHHHhhcCCC--------------------hh-HH----HHH
Q 012897          138 KLSMLRNATWTLSNFCRGK--PQPPFDQVR----PALPALAQLVHSND--------------------EE-VL----TDA  186 (454)
Q Consensus       138 ~~~~~~~a~~~L~~l~~~~--~~~~~~~~~----~~l~~l~~ll~~~~--------------------~~-v~----~~a  186 (454)
                      +.++...++..-..+..+-  .........    .+++.++.-+.-+.                    ++ ..    +.+
T Consensus       357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~  436 (1023)
T 4hat_C          357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV  436 (1023)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence            6677677666555554421  111222223    34444444433221                    01 11    122


Q ss_pred             HHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--CCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcC---
Q 012897          187 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH---  261 (454)
Q Consensus       187 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~---  261 (454)
                      +..+.++..  ++...     -+++.+...+..  .++..+++++++++.++.+.......-.-..+++.|+.++.+   
T Consensus       437 L~~l~~l~~--~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~  509 (1023)
T 4hat_C          437 LVYLTHLNV--IDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRG  509 (1023)
T ss_dssp             HHHHHHHCH--HHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHhccCH--HHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcccc
Confidence            222222211  11111     123333344443  568889999999999997655332222223567778887753   


Q ss_pred             --CcchhHHHHHHHHHHHHhc---CCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHH------
Q 012897          262 --SHKKSIKKEACWTISNITA---GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIK------  330 (454)
Q Consensus       262 --~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~------  330 (454)
                        + ...++..++|+++.++.   .+++..     ..++..|++.+..+++.++..|++++.+++..+......      
T Consensus       510 ~d~-k~~v~~t~~~~lGry~~wl~~~~~~L-----~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~  583 (1023)
T 4hat_C          510 KDN-KAVVASDIMYVVGQYPRFLKAHWNFL-----RTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRES  583 (1023)
T ss_dssp             HHH-HHHHHHHHHHHHHTCHHHHHHCHHHH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCS
T ss_pred             Ccc-hHHHHHHHHHHHHHHHHHHhccHHHH-----HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence              3 44567788999998875   233332     235666777777778899999999999998854322210      


Q ss_pred             --HHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhh
Q 012897          331 --YLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGE  368 (454)
Q Consensus       331 --~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~  368 (454)
                        ++.  .++..+......-+++-+..+..++..++....
T Consensus       584 ~p~~~--~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~  621 (1023)
T 4hat_C          584 EPFIQ--TIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1023)
T ss_dssp             SCHHH--HHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             chhHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence              111  123344444444566666778888888877644

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.15  E-value=0.00012  Score=76.81  Aligned_cols=331  Identities=11%  Similarity=0.056  Sum_probs=173.9

Q ss_pred             HHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc--hhhHHH---Hh--CCC
Q 012897           11 SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS--ENTKVV---ID--HGA   83 (454)
Q Consensus        11 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~---~~--~g~   83 (454)
                      .++..+++++....... ....   ....+++.+.+.+.  + ++++..|+.++..+.....  .....+   +.  .+.
T Consensus       217 ~~~~~~l~~l~~wi~~~-~~~~---~~~~ll~~l~~~l~--~-~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~  289 (963)
T 2x19_B          217 CVRQKVLKCFSSWVQLE-VPLQ---DCEALIQAAFAALQ--D-SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGL  289 (963)
T ss_dssp             HHHHHHHHHHHHHHTSS-CCGG---GTHHHHHHHHHHTT--S-TTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCC-CCcc---cchHHHHHHHHHhC--C-chHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhh
Confidence            46667777776655422 1111   11334666777773  4 6889999999999987321  111111   11  011


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH----h----cCChHHHHHHhch----hhhhhHHHHHHHHHHh
Q 012897           84 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVL----S----QGALIPLLAQLNE----RAKLSMLRNATWTLSN  151 (454)
Q Consensus        84 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~----~----~~~i~~l~~~l~~----~~~~~~~~~a~~~L~~  151 (454)
                      .+.+...+...+.......+..+..+....+   ..+.    .    ...++.++.....    ..++++...++..+..
T Consensus       290 ~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~---~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~  366 (963)
T 2x19_B          290 QEQLRQAVQNGDMETSHGICRIAVALGENHS---RALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYT  366 (963)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH---HHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhH---HHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHH
Confidence            2222223334455555666666666553211   1111    0    0123444444322    1344555555555555


Q ss_pred             hcCCCCCC-------Ch----hhhhchHHHHHHhhcCCCh---------------hHHHHHHHHHHHhccCChHHHHHHH
Q 012897          152 FCRGKPQP-------PF----DQVRPALPALAQLVHSNDE---------------EVLTDACWALSYLSDGTNDKIQAVI  205 (454)
Q Consensus       152 l~~~~~~~-------~~----~~~~~~l~~l~~ll~~~~~---------------~v~~~a~~~L~~l~~~~~~~~~~~~  205 (454)
                      ++......       ..    .....+++.++..+..+++               ..+..+..+|..++......   +.
T Consensus       367 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~---~l  443 (963)
T 2x19_B          367 LQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAE---LL  443 (963)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHH---HH
T ss_pred             HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHH---HH
Confidence            54421000       00    1123344444444432221               11334444444444221110   11


Q ss_pred             HhCcHHHHHHhc----CCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhh---cCCcchhHHHHHHHHHHHH
Q 012897          206 EAGVCPRLVELL----GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLL---THSHKKSIKKEACWTISNI  278 (454)
Q Consensus       206 ~~~~i~~L~~ll----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L---~~~~~~~v~~~a~~~L~nl  278 (454)
                      . -+++.+...+    .+.++..++.++++++.++.+.....     ...++.++..+   ..+ ++.+|..++|+++.+
T Consensus       444 ~-~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~-~~~vr~~~~~~l~~~  516 (963)
T 2x19_B          444 S-NLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISIS-NVQLADTVMFTIGAL  516 (963)
T ss_dssp             H-HHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCC-SHHHHHHHHHHHHHT
T ss_pred             H-HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHHH
Confidence            1 1223333344    45677889999999999998654322     12334444433   334 678999999999998


Q ss_pred             hcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCC--CCHHHHHHH
Q 012897          279 TAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC--PDPRIVTVC  356 (454)
Q Consensus       279 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~--~~~~v~~~a  356 (454)
                      +..-.... ..+ ..+++.++..+.+  +.|+..|++++.+++........+++  ..++..|..++..  -+.+.+..+
T Consensus       517 ~~~l~~~~-~~l-~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~  590 (963)
T 2x19_B          517 SEWLADHP-VMI-NSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA--ANIVAVSQDVLMKQIHKTSQCMWL  590 (963)
T ss_dssp             HHHHHHCH-HHH-TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH--HHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             HHHHHhCH-HHH-HHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhccCCCChHHHHHH
Confidence            85211111 223 4688999988854  89999999999999864322211221  1244555555554  356788889


Q ss_pred             HHHHHHHHHhh
Q 012897          357 LEGLENILKVG  367 (454)
Q Consensus       357 l~~L~~l~~~~  367 (454)
                      +.++..++...
T Consensus       591 ~eai~~i~~~~  601 (963)
T 2x19_B          591 MQALGFLLSAL  601 (963)
T ss_dssp             HHHHHHHHTTS
T ss_pred             HHHHHHHHhcC
Confidence            99999998643

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=98.15  E-value=0.00069  Score=70.65  Aligned_cols=311  Identities=10%  Similarity=0.112  Sum_probs=178.8

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCC---h-
Q 012897           40 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV-KLLASPSDDVREQAVWALGNVAGDS---P-  114 (454)
Q Consensus        40 ~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~~l~~~~---~-  114 (454)
                      +++.+..+|.++.++.+...++.++.....-  -....+.+.+.++.++ .++.  +++++..|+.+|..+.+..   + 
T Consensus       195 I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~W--I~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~  270 (1023)
T 4hat_C          195 IFKLCFQVLEQGASSSLIVATLESLLRYLHW--IPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDN  270 (1023)
T ss_dssp             HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTT--SCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSC
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh--CCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCch
Confidence            4445556665554478888999999998862  2245677788999999 8884  6789999999999998632   2 


Q ss_pred             -hhHHHHHhc--CChHHH-----------HHHhc--hhhhhhHHHHHHHHHHhhcCCCC-----CCC-hhhhhchHHHHH
Q 012897          115 -RCRDLVLSQ--GALIPL-----------LAQLN--ERAKLSMLRNATWTLSNFCRGKP-----QPP-FDQVRPALPALA  172 (454)
Q Consensus       115 -~~~~~~~~~--~~i~~l-----------~~~l~--~~~~~~~~~~a~~~L~~l~~~~~-----~~~-~~~~~~~l~~l~  172 (454)
                       .....+...  +.+..+           ...+.  ...+.+.....+..+..+.....     ... ......++..++
T Consensus       271 ~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll  350 (1023)
T 4hat_C          271 DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLI  350 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH
Confidence             122111110  001111           11111  22356666666666655543321     001 111223344566


Q ss_pred             HhhcCCChhHHHHHHHHHHHhccC---C---hHHHHHHHHhCcHHHHHHhcCCCCC---------cc-h--------hhH
Q 012897          173 QLVHSNDEEVLTDACWALSYLSDG---T---NDKIQAVIEAGVCPRLVELLGHPSP---------SV-L--------IPA  228 (454)
Q Consensus       173 ~ll~~~~~~v~~~a~~~L~~l~~~---~---~~~~~~~~~~~~i~~L~~ll~~~~~---------~v-~--------~~a  228 (454)
                      .+-..++.++...++..-..++..   .   ......++. .+++.++..+..+..         ++ +        ...
T Consensus       351 ~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~-~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~  429 (1023)
T 4hat_C          351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQL  429 (1023)
T ss_dssp             HHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHH-HHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHH
T ss_pred             HhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH-HHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHH
Confidence            665667888877777766666531   0   111121222 456666666655431         11 0        000


Q ss_pred             H----HHHhHhhccCccchhhhhccCChHHHHHh----hcC-CcchhHHHHHHHHHHHHhcCC-HHHHHHHHhCCChHHH
Q 012897          229 L----RTVGNIVTGDDFQTQCIITYGALPYLLGL----LTH-SHKKSIKKEACWTISNITAGN-RDQIQAVIDAGLVGPL  298 (454)
Q Consensus       229 ~----~~L~~l~~~~~~~~~~~~~~~~l~~L~~~----L~~-~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~~L  298 (454)
                      .    .+|..++.        +.....++.+++.    +.+ ..++..++.++|+++.++.+. ++....++ ..+++.|
T Consensus       430 f~~~Rd~L~~l~~--------l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l-~~vi~~L  500 (1023)
T 4hat_C          430 YKSEREVLVYLTH--------LNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDL  500 (1023)
T ss_dssp             HHHHHHHHHHHHH--------HCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHhc--------cCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHH-HHHHHHH
Confidence            1    22222221        1111233333433    333 127899999999999999753 33233343 3478888


Q ss_pred             HHHhhh-----cchhhHHHHHHHHHHhcCCC--CHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhh
Q 012897          299 VNLLQN-----AEFDIKKEAAWAISNATSGG--THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEA  369 (454)
Q Consensus       299 ~~ll~~-----~~~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~  369 (454)
                      +.++..     ....++..++|+++..+..-  .++..+     .++..|...+..+++.++..|++++.++...+..
T Consensus       501 l~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~  573 (1023)
T 4hat_C          501 LDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY  573 (1023)
T ss_dssp             HHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            888864     34556778889998876532  222222     2577788888888899999999999999987654

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.13  E-value=0.00047  Score=72.36  Aligned_cols=339  Identities=13%  Similarity=0.096  Sum_probs=188.4

Q ss_pred             cCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhh---CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCC
Q 012897           49 MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL---ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA  125 (454)
Q Consensus        49 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  125 (454)
                      .+.+ ...++.++++++.++.+-.+..     ...++.++..+   .++++.++..++++++.++..-..... . -...
T Consensus       459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~-l~~v  530 (963)
T 2x19_B          459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-M-INSV  530 (963)
T ss_dssp             CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-H-HTTT
T ss_pred             CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-H-HHHH
Confidence            4445 7889999999999997433211     23344444443   335788999999999998743221111 2 2356


Q ss_pred             hHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCCh-HHHH
Q 012897          126 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN--DEEVLTDACWALSYLSDGTN-DKIQ  202 (454)
Q Consensus       126 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~-~~~~  202 (454)
                      ++.++..+ .+  +.++..|++++.+++......-......+++.+..++...  +...+..+..+++.++...+ +...
T Consensus       531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~  607 (963)
T 2x19_B          531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL  607 (963)
T ss_dssp             HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence            78888887 33  7899999999999997543222234456677777777753  56788889999999876543 3333


Q ss_pred             HHHHhCcHHHHHHhc----CCC-CCcchh---hHHHHHhHhhccCccc-------------------hhhh--hccCChH
Q 012897          203 AVIEAGVCPRLVELL----GHP-SPSVLI---PALRTVGNIVTGDDFQ-------------------TQCI--ITYGALP  253 (454)
Q Consensus       203 ~~~~~~~i~~L~~ll----~~~-~~~v~~---~a~~~L~~l~~~~~~~-------------------~~~~--~~~~~l~  253 (454)
                      ..++ .+++.+...+    ..+ +++.+.   ..+.+|+.+...-...                   ...+  +...+++
T Consensus       608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  686 (963)
T 2x19_B          608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ  686 (963)
T ss_dssp             HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHH
Confidence            3333 3444444433    222 333333   3455555554321100                   0001  1223455


Q ss_pred             HHHHhhcCC-cchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHh----hh-cchhhHHHHHHHHHHhcC--CCC
Q 012897          254 YLLGLLTHS-HKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLL----QN-AEFDIKKEAAWAISNATS--GGT  325 (454)
Q Consensus       254 ~L~~~L~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll----~~-~~~~v~~~a~~aL~~l~~--~~~  325 (454)
                      .+..++... .+..+.+.++.++..++....+..     ...++.++..+    .. +.+    ..++.+..++.  ...
T Consensus       687 ~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~-----~~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~~  757 (963)
T 2x19_B          687 LIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDF-----APMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFAHE  757 (963)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTT-----GGGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhccCchHHHHHHHHHHHHHHHhhcccc-----cccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhCCC
Confidence            555555321 156788889988888764211111     12244444332    22 122    23333444333  211


Q ss_pred             H---HHHHHHHHcCCcHHHhhccC---CCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccH-HHHHHHHhccHHHHHH
Q 012897          326 H---EQIKYLVREGCIKPLCDLFV---CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQ-YAQLVEEAEGLEKIEN  398 (454)
Q Consensus       326 ~---~~~~~l~~~~~i~~L~~~l~---~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~-~~~~l~~~g~~~~l~~  398 (454)
                      .   +....+.+ .++..+..++.   ..+|+++......+..+++.....--      .... +...      ++.+..
T Consensus       758 ~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~------~~~~~~~~i------~~~~~~  824 (963)
T 2x19_B          758 PAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFL------CERLDVKAV------FQCAVL  824 (963)
T ss_dssp             TTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGG------CTTSCHHHH------HHHHHH
T ss_pred             cchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHc------CCcccHHHH------HHHHHH
Confidence            1   11211111 12333333333   24699999999999999987654321      0010 2222      233444


Q ss_pred             HhcCCCHHHHHHHHHHHHHhcCc
Q 012897          399 LQSHDNNEIYEKAVKILETYWLE  421 (454)
Q Consensus       399 l~~~~~~~v~~~a~~~l~~~~~~  421 (454)
                      .+.+++..+...+...+..++..
T Consensus       825 ~l~~~~~~~~~~~l~~l~~l~~~  847 (963)
T 2x19_B          825 ALKFPEAPTVKASCGFFTELLPR  847 (963)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHGGG
T ss_pred             HcCCCCHHHHHHHHHHHHHHHhc
Confidence            56788999999999999988764

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.05  E-value=8.1e-05  Score=65.32  Aligned_cols=187  Identities=13%  Similarity=0.101  Sum_probs=134.6

Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhh
Q 012897          168 LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCII  247 (454)
Q Consensus       168 l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  247 (454)
                      ...++.-|.+.+.+.+..++.-|..+...+......++..+++..|+......+...+..++.++.++..+....-..+-
T Consensus       120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs  199 (339)
T 3dad_A          120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA  199 (339)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence            34566667778888899999999986656667788899999999999999998889999999999999875332222222


Q ss_pred             ccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHh----------CCChHHHHHHhh---hcchhhHHHHH
Q 012897          248 TYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID----------AGLVGPLVNLLQ---NAEFDIKKEAA  314 (454)
Q Consensus       248 ~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~----------~~~i~~L~~ll~---~~~~~v~~~a~  314 (454)
                      ...++..+..++.+. ...|.+.|...|..++..++.....+.+          ...++.|+.+++   ..+.+++.+|.
T Consensus       200 ~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am  278 (339)
T 3dad_A          200 HSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV  278 (339)
T ss_dssp             CHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence            557889999999977 8999999999999988754322222111          224889999997   56899999999


Q ss_pred             HHHHHhcCCCC-HH----HHHHHHHcCCcHHHhhccCCC--CHHHHHH
Q 012897          315 WAISNATSGGT-HE----QIKYLVREGCIKPLCDLFVCP--DPRIVTV  355 (454)
Q Consensus       315 ~aL~~l~~~~~-~~----~~~~l~~~~~i~~L~~~l~~~--~~~v~~~  355 (454)
                      ..|..+....+ .+    ....+.+.|.-..+...++..  +++++..
T Consensus       279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            88877776644 23    122333345444555556654  5666544

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.04  E-value=0.0028  Score=67.05  Aligned_cols=312  Identities=10%  Similarity=0.088  Sum_probs=172.8

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCC--hh--
Q 012897           41 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAGDS--PR--  115 (454)
Q Consensus        41 l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~--~~--  115 (454)
                      ++.+..++.+..++.++..++.++.+...-.+  ...+.+..+++.++. ++  .+++++..++.+|..+....  +.  
T Consensus       196 ~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~  271 (1049)
T 3m1i_C          196 FKLCFQVLEQGSSSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDND  271 (1049)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchh
Confidence            44445556554447899999999988776222  233555677777773 44  37899999999999988442  21  


Q ss_pred             -hHHHHHhcCChHHHHHHhc-----------------hhhhhhHHHHHHHHHHhhcCCC------CCCChhhhhchHHHH
Q 012897          116 -CRDLVLSQGALIPLLAQLN-----------------ERAKLSMLRNATWTLSNFCRGK------PQPPFDQVRPALPAL  171 (454)
Q Consensus       116 -~~~~~~~~~~i~~l~~~l~-----------------~~~~~~~~~~a~~~L~~l~~~~------~~~~~~~~~~~l~~l  171 (454)
                       ....+..  .++.++..+.                 .+.+.+.....+..+..+....      +.........+++.+
T Consensus       272 ~~~~~~~~--l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l  349 (1049)
T 3m1i_C          272 LIKRQTVL--FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYL  349 (1049)
T ss_dssp             HHHHHHHH--HHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred             hHHHHHHH--HHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Confidence             1111111  1112222110                 1224444445555444332210      111122335567777


Q ss_pred             HHhhcCCChhHHHHHHHHHHHhcc----C--ChHHHHHHHHhCcHHHHHHhcCCCCC----------------------c
Q 012897          172 AQLVHSNDEEVLTDACWALSYLSD----G--TNDKIQAVIEAGVCPRLVELLGHPSP----------------------S  223 (454)
Q Consensus       172 ~~ll~~~~~~v~~~a~~~L~~l~~----~--~~~~~~~~~~~~~i~~L~~ll~~~~~----------------------~  223 (454)
                      +.+...++.++...++..+..++.    .  .......++. .+++.++..+..++.                      .
T Consensus       350 l~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~  428 (1049)
T 3m1i_C          350 IQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQ  428 (1049)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHH-HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHH
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH-HHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHH
Confidence            777777888888888888877765    1  1112222222 455566666543211                      0


Q ss_pred             chhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcC-CcchhHHHHHHHHHHHHhcCCHHH-HHHHHhCCChHHHHHH
Q 012897          224 VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH-SHKKSIKKEACWTISNITAGNRDQ-IQAVIDAGLVGPLVNL  301 (454)
Q Consensus       224 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~-~~~~~v~~~a~~~L~nl~~~~~~~-~~~l~~~~~i~~L~~l  301 (454)
                      .+..+..+|..++...+..   ++ .-+.+.+-..+.. ..++..++.++++++.++...... ...++ ..+++.+..+
T Consensus       429 ~~~~~~~~L~~l~~~~~~~---~l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l-~~v~~~l~~l  503 (1049)
T 3m1i_C          429 LYKSEREVLVYLTHLNVID---TE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDL  503 (1049)
T ss_dssp             HHHHHHHHHHHHHHHCHHH---HH-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHH---HH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHH-HHHHHHHHHH
Confidence            1223455555555322111   11 0122333444432 227788999999999998643222 11211 2245555554


Q ss_pred             hh-----hcchhhHHHHHHHHHHhcCCC--CHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhh
Q 012897          302 LQ-----NAEFDIKKEAAWAISNATSGG--THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEA  369 (454)
Q Consensus       302 l~-----~~~~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~  369 (454)
                      ..     .+.+.++..++|+++.++..-  .++.   +.  .+++.|+..+.++++.|+..|+.++.++++.+..
T Consensus       504 ~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~---l~--~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~  573 (1049)
T 3m1i_C          504 TVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF---LR--TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY  573 (1049)
T ss_dssp             TTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHH---HH--HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred             HhhhccccchHHHHHHHHHHHHHHHHHHHhHHHH---HH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            32     234556667999999776421  2222   22  2677888888888999999999999999986543

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=97.90  E-value=0.0018  Score=68.43  Aligned_cols=341  Identities=10%  Similarity=0.094  Sum_probs=180.0

Q ss_pred             CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC-chh----hHHHHh--
Q 012897            8 DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT-SEN----TKVVID--   80 (454)
Q Consensus         8 ~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~-~~~----~~~~~~--   80 (454)
                      .++.++..+++++...+.--  + ...+.+..+++.+.+.+. .+ ++++..|+.+|..+.... +..    ...+..  
T Consensus       207 ~~~~~~~~aL~~l~~~l~wi--~-~~~~~~~~ll~~l~~~~l-~~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~  281 (1049)
T 3m1i_C          207 SSSSLIVATLESLLRYLHWI--P-YRYIYETNILELLSTKFM-TS-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFF  281 (1049)
T ss_dssp             CCHHHHHHHHHHHHHHTTTS--C-THHHHSSSHHHHHHTHHH-HS-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhC--C-HHHHhhhhHHHHHHHHhC-CC-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Confidence            45778888888888876542  2 333555677777774332 25 899999999999998632 111    111110  


Q ss_pred             CCChHHHHH-hh-------------CCCCHHHHHHHHHHHHHhhC-------CChhhHHHHHhcCChHHHHHHhchhhhh
Q 012897           81 HGAVPIFVK-LL-------------ASPSDDVREQAVWALGNVAG-------DSPRCRDLVLSQGALIPLLAQLNERAKL  139 (454)
Q Consensus        81 ~g~i~~L~~-lL-------------~~~~~~v~~~a~~~L~~l~~-------~~~~~~~~~~~~~~i~~l~~~l~~~~~~  139 (454)
                      .+++..+.. ++             .+.+.+.....+..+..+..       ..+..+..+  ...++.++... ..++.
T Consensus       282 ~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~-~~~d~  358 (1049)
T 3m1i_C          282 QNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLS-KIEER  358 (1049)
T ss_dssp             HHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHH-TSSCH
T ss_pred             HHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHH-cCCcH
Confidence            122222221 11             12234444455555544331       111111111  12344455444 34567


Q ss_pred             hHHHHHHHHHHhhcC----CCCCC--ChhhhhchHHHHHHhhcCC-------------------Ch---hHHHHHHHHHH
Q 012897          140 SMLRNATWTLSNFCR----GKPQP--PFDQVRPALPALAQLVHSN-------------------DE---EVLTDACWALS  191 (454)
Q Consensus       140 ~~~~~a~~~L~~l~~----~~~~~--~~~~~~~~l~~l~~ll~~~-------------------~~---~v~~~a~~~L~  191 (454)
                      ++...++..+..++.    .+...  .......+++.++..+.-+                   +.   ..+..+..+|.
T Consensus       359 ~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~  438 (1049)
T 3m1i_C          359 ELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLV  438 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHH
Confidence            788888877777766    32111  1123344555555544221                   00   12334555666


Q ss_pred             HhccCChHHHHHHHHhCcHHHHHHhcC--CCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcC----Ccch
Q 012897          192 YLSDGTNDKIQAVIEAGVCPRLVELLG--HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH----SHKK  265 (454)
Q Consensus       192 ~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~----~~~~  265 (454)
                      .++...+..   ++. -+.+.+-..+.  ..++..++.++++++.++.........-.-..+++.+..+...    ...+
T Consensus       439 ~l~~~~~~~---~l~-~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~  514 (1049)
T 3m1i_C          439 YLTHLNVID---TEE-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKA  514 (1049)
T ss_dssp             HHHHHCHHH---HHH-HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHH
T ss_pred             HHHccCHHH---HHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchH
Confidence            655332221   111 22334444444  3567789999999999986543221111112344445443322    1145


Q ss_pred             hHHHHHHHHHHHHhc---CCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHH--------HHHHH
Q 012897          266 SIKKEACWTISNITA---GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQI--------KYLVR  334 (454)
Q Consensus       266 ~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~--------~~l~~  334 (454)
                      .++..++|+++.++.   ..++..     ..+++.++..+.+.++.|+..|++++.+++........        .++  
T Consensus       515 ~v~~~~~~~lgry~~~~~~~~~~l-----~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~--  587 (1049)
T 3m1i_C          515 VVASDIMYVVGQYPRFLKAHWNFL-----RTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI--  587 (1049)
T ss_dssp             HHHHHHHHHHHHCHHHHHHCHHHH-----HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH--
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH--
Confidence            566679999998775   222222     23577788888888899999999999999885433221        111  


Q ss_pred             cCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 012897          335 EGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG  367 (454)
Q Consensus       335 ~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~  367 (454)
                      ..++..+..++..-+.+-.....+++..++...
T Consensus       588 ~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~  620 (1049)
T 3m1i_C          588 QTIIRDIQKTTADLQPQQVHTFYKACGIIISEE  620 (1049)
T ss_dssp             HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence            123444445555545555556667777776543

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.77  E-value=0.00018  Score=74.82  Aligned_cols=311  Identities=10%  Similarity=0.004  Sum_probs=170.2

Q ss_pred             HhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC--hhhHHHHHhc
Q 012897           46 EFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS--PRCRDLVLSQ  123 (454)
Q Consensus        46 ~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~  123 (454)
                      ....+.+ +.++..++.++.....-  -....+++.++++.+..+|..  ++++..|+.+|..+....  +..+..++..
T Consensus       200 ~~~~~~~-~~l~~~~L~~l~s~i~w--i~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~  274 (980)
T 3ibv_A          200 AYSNAKN-YGTVGLCLQVYAQWVSW--ININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNI  274 (980)
T ss_dssp             HHHHTTC-HHHHHHHHHHHHHHTTT--SCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHhccCC-HHHHHHHHHHHHHHHhh--cCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHH
Confidence            3333356 88999999999999872  233556667788888888865  899999999999988433  2222222221


Q ss_pred             CChHHHHHHhch-hhhhhHHHHHHHHHHhhc------CCCCC-CC-------hhhhhchHHHHHHhhcCCChhHHHHHHH
Q 012897          124 GALIPLLAQLNE-RAKLSMLRNATWTLSNFC------RGKPQ-PP-------FDQVRPALPALAQLVHSNDEEVLTDACW  188 (454)
Q Consensus       124 ~~i~~l~~~l~~-~~~~~~~~~a~~~L~~l~------~~~~~-~~-------~~~~~~~l~~l~~ll~~~~~~v~~~a~~  188 (454)
                      =.+...+..+.. ..|.++.+..+..+..+.      ...+. ..       .....++++.++.++.+++.++...++.
T Consensus       275 l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~  354 (980)
T 3ibv_A          275 LNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFP  354 (980)
T ss_dssp             HHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHH
T ss_pred             HhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence            001111111111 345555544443332221      11110 11       1344678999999999999888877777


Q ss_pred             HHHHhccC-----C----hHHHHHHHHhCcHHHHHHhcCCCCC----------------cchhhHHHHHhHhhc-cCccc
Q 012897          189 ALSYLSDG-----T----NDKIQAVIEAGVCPRLVELLGHPSP----------------SVLIPALRTVGNIVT-GDDFQ  242 (454)
Q Consensus       189 ~L~~l~~~-----~----~~~~~~~~~~~~i~~L~~ll~~~~~----------------~v~~~a~~~L~~l~~-~~~~~  242 (454)
                      .+..+...     .    ......++. .+++.++..+..++.                +.|+... .+-..+. -.+..
T Consensus       355 Fw~~~l~~~~~~~~~~~~~~~~~~~l~-~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~  432 (980)
T 3ibv_A          355 FLSDLLVSLRKESSSKELSASLKEFLK-SLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSL  432 (980)
T ss_dssp             HHHHHHHHHHHHTTSCCCCHHHHHHHH-HHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHhccccccccHHHHHHHH-HHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHH
Confidence            76655421     0    112222222 455556666654321                1233322 2222211 11111


Q ss_pred             hhhhhccCChHHHHHhhc---CCcchhHHHHHHHHHHHHhcCCHHHHHHHH-hC----CChHHHHHHhh-----hcchhh
Q 012897          243 TQCIITYGALPYLLGLLT---HSHKKSIKKEACWTISNITAGNRDQIQAVI-DA----GLVGPLVNLLQ-----NAEFDI  309 (454)
Q Consensus       243 ~~~~~~~~~l~~L~~~L~---~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~----~~i~~L~~ll~-----~~~~~v  309 (454)
                      .-..+-.-+.+.+...+.   +. ++..++.++.+++.++.+......... ..    .+++.+..+++     ..++.|
T Consensus       433 ~l~~~~~~i~~~l~~~l~~~~~~-~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V  511 (980)
T 3ibv_A          433 FSSYMYSAITSSLSTAATLSPEN-SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLV  511 (980)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHH
Confidence            000000011122223332   23 678889999999999875322110000 01    13455555555     468899


Q ss_pred             HHHHHHHHHHhcCCCC--HHHHHHHHHcCCcHHHhh--ccCCCCHHHHHHHHHHHHHHHHhhhh
Q 012897          310 KKEAAWAISNATSGGT--HEQIKYLVREGCIKPLCD--LFVCPDPRIVTVCLEGLENILKVGEA  369 (454)
Q Consensus       310 ~~~a~~aL~~l~~~~~--~~~~~~l~~~~~i~~L~~--~l~~~~~~v~~~al~~L~~l~~~~~~  369 (454)
                      +..++++++..+..-.  ++...     .+++.++.  .+.++++.++.+|..++.++++.+..
T Consensus       512 ~~~~~~~l~rys~~~~~~~~~l~-----~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~  570 (980)
T 3ibv_A          512 QLLYMEILVRYASFFDYESAAIP-----ALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK  570 (980)
T ss_dssp             HHHHHHHHHHTGGGGGTCCTTHH-----HHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHhcCchhHH-----HHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence            9999999999876421  12111     14556666  66678889999999999999987664

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.67  E-value=0.00092  Score=62.46  Aligned_cols=244  Identities=12%  Similarity=0.080  Sum_probs=159.0

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch--hhHHHHhCCChHHHHHhh--CC-----C---CHHHHHHHHHHHH
Q 012897           40 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE--NTKVVIDHGAVPIFVKLL--AS-----P---SDDVREQAVWALG  107 (454)
Q Consensus        40 ~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~g~i~~L~~lL--~~-----~---~~~v~~~a~~~L~  107 (454)
                      +...|+.-|-++. .++|.-|+.+|+.+......  .+....+..+.-.++..+  +.     .   -..||+.|+.+|+
T Consensus       175 fcE~L~~DLFdp~-WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG  253 (800)
T 3oc3_A          175 FFEQISDNLLSYE-WYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS  253 (800)
T ss_dssp             TTHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence            4567777788888 79999999999998762211  111001113333333333  21     1   2679999999999


Q ss_pred             HhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHH
Q 012897          108 NVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDAC  187 (454)
Q Consensus       108 ~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~  187 (454)
                      .+ ..-+..      ..++..++..+ ....-+++..++..|.++ .+-- ..   ..++++.++..|.+.|++|+..|+
T Consensus       254 aL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL-~DLL-~~---Ld~Vv~aVL~GL~D~DDDVRAVAA  320 (800)
T 3oc3_A          254 RI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYL-KEFV-ED---KDGLCRKLVSLLSSPDEDIKLLSA  320 (800)
T ss_dssp             HH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHT-GGGC-CC---HHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHH-HHHH-HH---HHHHHHHHHhhcCCcccHHHHHHH
Confidence            98 554432      23344444433 455678999999999999 2211 11   578899999999999999999999


Q ss_pred             HHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC--CcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcch
Q 012897          188 WALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS--PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK  265 (454)
Q Consensus       188 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~  265 (454)
                      .+|.-++  .+....     .++..+...|.+-+  ..-....+..|+.++..+..   .......+|.|.+++.++ -.
T Consensus       321 etLiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHt-IT  389 (800)
T 3oc3_A          321 ELLCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSP-VP  389 (800)
T ss_dssp             HHHTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCS-SH
T ss_pred             HHhhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCC-cH
Confidence            9999998  232333     34455666665432  22344567778888776542   122347899999999999 99


Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHH
Q 012897          266 SIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAIS  318 (454)
Q Consensus       266 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~  318 (454)
                      .||..+..++..+.  .....+.        ....++-+++++++..+..+..
T Consensus       390 SVR~AVL~TL~tfL--~~~~LRL--------IFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          390 EVRTSILNMVKNLS--EESIDFL--------VAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHHHHHHTTTCC--CHHHHHH--------HHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--hhhHHHH--------HHHHHHhCCcHHHHHHHHHHHH
Confidence            99999999998776  2222111        1233455567778777777664

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.66  E-value=0.00017  Score=74.96  Aligned_cols=304  Identities=10%  Similarity=0.016  Sum_probs=162.9

Q ss_pred             CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC--chhhHHHHhCCCh
Q 012897            7 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT--SENTKVVIDHGAV   84 (454)
Q Consensus         7 s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~g~i   84 (454)
                      +.++.++..++.++...+.-   -....++..+.++.+.++|..   ++++..|+.+|..+....  ++.+..++..=.+
T Consensus       204 ~~~~~l~~~~L~~l~s~i~w---i~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L  277 (980)
T 3ibv_A          204 AKNYGTVGLCLQVYAQWVSW---ININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNL  277 (980)
T ss_dssp             TTCHHHHHHHHHHHHHHTTT---SCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhh---cCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence            46778888899999888864   345666777889999988864   789999999999998733  2222222221011


Q ss_pred             HHHHHhhC--CCCHHHHHHHHHHHHHhhC------CCh-----hhHHH--HHhcCChHHHHHHhchhhhhhHHHHHHHHH
Q 012897           85 PIFVKLLA--SPSDDVREQAVWALGNVAG------DSP-----RCRDL--VLSQGALIPLLAQLNERAKLSMLRNATWTL  149 (454)
Q Consensus        85 ~~L~~lL~--~~~~~v~~~a~~~L~~l~~------~~~-----~~~~~--~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L  149 (454)
                      ...+..+.  ..+.++.+..++.+..++.      ..+     +.+..  -.-.+.++.++.++ .+++.++...++..+
T Consensus       278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~Fw  356 (980)
T 3ibv_A          278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPFL  356 (980)
T ss_dssp             HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence            11122222  3566776655555543321      111     11111  11123677777777 445556666665555


Q ss_pred             HhhcCC----CC-CCChh----hhhchHHHHHHhhcCC-----Ch-----------hHHHHHHHHHHHh-ccCChHHHHH
Q 012897          150 SNFCRG----KP-QPPFD----QVRPALPALAQLVHSN-----DE-----------EVLTDACWALSYL-SDGTNDKIQA  203 (454)
Q Consensus       150 ~~l~~~----~~-~~~~~----~~~~~l~~l~~ll~~~-----~~-----------~v~~~a~~~L~~l-~~~~~~~~~~  203 (454)
                      ..+...    .. .....    ....+++.++.-+.-+     +.           +.|.... .+... +.-.+...-.
T Consensus       357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~  435 (980)
T 3ibv_A          357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSS  435 (980)
T ss_dssp             HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHH
Confidence            554422    11 01112    2233444444433321     11           2344333 33222 2222221111


Q ss_pred             HHHhCcHHHHHHhcC---CCCCcchhhHHHHHhHhhccCccchhhh-hcc----CChHHHHHhhc-----CCcchhHHHH
Q 012897          204 VIEAGVCPRLVELLG---HPSPSVLIPALRTVGNIVTGDDFQTQCI-ITY----GALPYLLGLLT-----HSHKKSIKKE  270 (454)
Q Consensus       204 ~~~~~~i~~L~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~----~~l~~L~~~L~-----~~~~~~v~~~  270 (454)
                      ..-.-+.+.+...+.   +.++..++.++.+|+.++.+........ -..    .+++.+..++.     .+ ++.+|..
T Consensus       436 ~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~~  514 (980)
T 3ibv_A          436 YMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQLL  514 (980)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHHH
Confidence            000011222223332   2457889999999999988654322211 011    23455555554     45 8899999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhh------cchhhHHHHHHHHHHhcCCCC
Q 012897          271 ACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN------AEFDIKKEAAWAISNATSGGT  325 (454)
Q Consensus       271 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~a~~aL~~l~~~~~  325 (454)
                      ++++++..+.--..      ....++.++..+-+      +++.|+..|+.++.+++....
T Consensus       515 ~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~  569 (980)
T 3ibv_A          515 YMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK  569 (980)
T ss_dssp             HHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence            99999998862111      12445555555443      567899999999999987543

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.65  E-value=0.0079  Score=62.70  Aligned_cols=313  Identities=11%  Similarity=0.106  Sum_probs=168.1

Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHH-HHhhCCCCHHHHHHHHHHHHHhhCC-ChhhHHH
Q 012897           42 PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF-VKLLASPSDDVREQAVWALGNVAGD-SPRCRDL  119 (454)
Q Consensus        42 ~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L-~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~  119 (454)
                      +.+..+|..+.++.+...++.+|..+..=-  ....+++.++++.+ ..+|  ++++++..|+.+|..+.+. .+.+...
T Consensus       209 ~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI--~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~  284 (1073)
T 3gjx_A          209 QLCQFVMENSQNAPLVHATLETLLRFLNWI--PLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQ  284 (1073)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHTTTS--CTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHH
T ss_pred             HHHHHHhcccCCHHHHHHHHHHHHHHHHhc--CHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHH
Confidence            334445544444888888999999988722  34567788888888 4666  4688999999999998753 2222222


Q ss_pred             HHhcCChHHHH----HHh------------chhhhhhHHHHHHHHHHhhcCCCC-----C-CChhhhhchHHHHHHhhcC
Q 012897          120 VLSQGALIPLL----AQL------------NERAKLSMLRNATWTLSNFCRGKP-----Q-PPFDQVRPALPALAQLVHS  177 (454)
Q Consensus       120 ~~~~~~i~~l~----~~l------------~~~~~~~~~~~a~~~L~~l~~~~~-----~-~~~~~~~~~l~~l~~ll~~  177 (454)
                      +..  ....++    .++            ....+++.....+..+..+....-     . ........++..++.+...
T Consensus       285 ~~~--lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~  362 (1073)
T 3gjx_A          285 FET--LFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEV  362 (1073)
T ss_dssp             HHH--HHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTC
T ss_pred             HHH--HHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCC
Confidence            211  111111    111            012234555556666655443320     0 0111223344455666677


Q ss_pred             CChhHHHHHHHHHHHhccC----C------h-----------HHHHHHHH---hCcHHHHHHhcCCCCC----------c
Q 012897          178 NDEEVLTDACWALSYLSDG----T------N-----------DKIQAVIE---AGVCPRLVELLGHPSP----------S  223 (454)
Q Consensus       178 ~~~~v~~~a~~~L~~l~~~----~------~-----------~~~~~~~~---~~~i~~L~~ll~~~~~----------~  223 (454)
                      ++.++...++..-..+...    .      .           .....+..   ..+...++..+..+++          .
T Consensus       363 ~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~  442 (1073)
T 3gjx_A          363 EETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEV  442 (1073)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCE
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchH
Confidence            7888877777665544321    0      0           00111111   1233334444443321          1


Q ss_pred             chh------------hHHHHHhHhhccCccchhhhhccCChHHHHHhhcCC-cchhHHHHHHHHHHHHhcC-CHHHHHHH
Q 012897          224 VLI------------PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS-HKKSIKKEACWTISNITAG-NRDQIQAV  289 (454)
Q Consensus       224 v~~------------~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~-~~~~v~~~a~~~L~nl~~~-~~~~~~~l  289 (454)
                      +|+            ..-.+|..++.-.......    -..+.+.+.+... .++...+.++|+++.++.. .++.-..+
T Consensus       443 ~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~  518 (1073)
T 3gjx_A          443 VREFMKDTDSINLYKNMRETLVYLTHLDYVDTEI----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRF  518 (1073)
T ss_dssp             EEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHH
T ss_pred             HHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccch
Confidence            111            1111222222111111100    1223333333322 2578899999999999753 33222222


Q ss_pred             HhCCChHHHHHHhhhc-----chhhHHHHHHHHHHhcCCC--CHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHH
Q 012897          290 IDAGLVGPLVNLLQNA-----EFDIKKEAAWAISNATSGG--THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLEN  362 (454)
Q Consensus       290 ~~~~~i~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~  362 (454)
                      + ..+++.|+.+.+..     ...++...+|+++.....-  +++...     .++..|.+.+.++++.|+..|+.++..
T Consensus       519 L-p~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~-----~vl~~L~~~m~~~~~~vq~aA~~af~~  592 (1073)
T 3gjx_A          519 L-VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK-----TVVNKLFEFMHETHDGVQDMACDTFIK  592 (1073)
T ss_dssp             H-HHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTCCSTTHHHHHHHHHHH
T ss_pred             H-HHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            2 24677777777553     2335556678888765431  223222     267888888889999999999999999


Q ss_pred             HHHhhhhh
Q 012897          363 ILKVGEAE  370 (454)
Q Consensus       363 l~~~~~~~  370 (454)
                      +...+...
T Consensus       593 i~~~C~~~  600 (1073)
T 3gjx_A          593 IAQKCRRH  600 (1073)
T ss_dssp             HHHHTGGG
T ss_pred             HHHHHHHH
Confidence            99887653

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.62  E-value=0.0013  Score=57.96  Aligned_cols=186  Identities=12%  Similarity=0.094  Sum_probs=122.4

Q ss_pred             ccccCCCHHHHHHHHHHHHHHhccCCCCcH-HHHH--HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc-----hh
Q 012897            3 AGVWSDDSSLQLEATTQFRKLLSIERSPPI-EEVI--QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS-----EN   74 (454)
Q Consensus         3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~-~~~~--~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~-----~~   74 (454)
                      +.|.|.++..|..|+..+.+++........ +...  -....+.+...+.+.+ ..++..++.++..++....     ..
T Consensus        16 e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~~~~~~~~   94 (278)
T 4ffb_C           16 ERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFASSSLKNA   94 (278)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC---CCHH
T ss_pred             HhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhhhhhcccc
Confidence            357899999999999999998876422211 1111  1234566777888888 8999999999998875211     11


Q ss_pred             hHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhc
Q 012897           75 TKVVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC  153 (454)
Q Consensus        75 ~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  153 (454)
                      .....-..+++.|+. .+.+..+.++..+..++..++...... ..     .++.++..+ .+.++.++..++..|..+.
T Consensus        95 ~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~l~~l~~~l  167 (278)
T 4ffb_C           95 HNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAAANCVYELM  167 (278)
T ss_dssp             HHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHHHHHHHHHH
Confidence            111112345777775 477888999999988887776322111 11     133444445 6678899999888888877


Q ss_pred             CCC--CCCC-hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 012897          154 RGK--PQPP-FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG  196 (454)
Q Consensus       154 ~~~--~~~~-~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~  196 (454)
                      ...  .... ......+++.+..++.+.++.||..|..++..+-..
T Consensus       168 ~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          168 AAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            542  1111 223345667788899999999999999999877644

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.62  E-value=0.00027  Score=60.72  Aligned_cols=183  Identities=14%  Similarity=0.060  Sum_probs=121.9

Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCcc---chhhh
Q 012897          170 ALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF---QTQCI  246 (454)
Q Consensus       170 ~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~---~~~~~  246 (454)
                      .+...+-+.|..-+..++..|.......+......++ .+++.+.-.+.+++..+...++.+|..+...-..   .....
T Consensus        50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lD-ll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~  128 (266)
T 2of3_A           50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE  128 (266)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHH-HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence            4455555667777777777777655433322111111 1233333334577888888888888877532111   11111


Q ss_pred             hccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc-CCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCC
Q 012897          247 ITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGT  325 (454)
Q Consensus       247 ~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  325 (454)
                      ...-++|.|+.-+-++ ...+|..+-.++..+.. .++.        .+++.+++-+.+.+..+|..++..+..+.....
T Consensus       129 ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G  199 (266)
T 2of3_A          129 EVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITNAG  199 (266)
T ss_dssp             HHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence            1135689999999888 78899988888776654 2222        256678888888999999999999998866322


Q ss_pred             HHHHHHHHHcCCc---HHHhhccCCCCHHHHHHHHHHHHHHHHhhh
Q 012897          326 HEQIKYLVREGCI---KPLCDLFVCPDPRIVTVCLEGLENILKVGE  368 (454)
Q Consensus       326 ~~~~~~l~~~~~i---~~L~~~l~~~~~~v~~~al~~L~~l~~~~~  368 (454)
                      ..      ....+   +.+..++.++|..|+..|+.++..+.+...
T Consensus       200 ~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G  239 (266)
T 2of3_A          200 IS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG  239 (266)
T ss_dssp             SG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred             CC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence            11      23468   999999999999999999999998887543

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=97.62  E-value=1.5e-05  Score=67.99  Aligned_cols=186  Identities=15%  Similarity=0.059  Sum_probs=118.0

Q ss_pred             ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 012897            3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG   82 (454)
Q Consensus         3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g   82 (454)
                      ..++++++.+|..++..+        .           ...+..++++++ +.+|..++..|   .              
T Consensus        57 ~ll~d~~~~VR~~AA~~l--------~-----------~~~l~~L~~D~~-~~VR~~aA~~L---~--------------   99 (244)
T 1lrv_A           57 QYLADPFWERRAIAVRYS--------P-----------VEALTPLIRDSD-EVVRRAVAYRL---P--------------   99 (244)
T ss_dssp             GGTTCSSHHHHHHHHTTS--------C-----------GGGGGGGTTCSS-HHHHHHHHTTS---C--------------
T ss_pred             HHhcCCCHHHHHHHHHhC--------C-----------HHHHHHHccCcC-HHHHHHHHHHC---C--------------
Confidence            345677788887777743        0           123566677777 78888877542   1              


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChh
Q 012897           83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD  162 (454)
Q Consensus        83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  162 (454)
                       .+.|..++.++++.+|..++..+   .   +            ..+..++ ++++..|+..+...   +.         
T Consensus       100 -~~~L~~ll~D~d~~VR~~aA~~l---~---~------------~~L~~L~-~D~d~~VR~~aA~~---l~---------  147 (244)
T 1lrv_A          100 -REQLSALMFDEDREVRITVADRL---P---L------------EQLEQMA-ADRDYLVRAYVVQR---IP---------  147 (244)
T ss_dssp             -SGGGGGTTTCSCHHHHHHHHHHS---C---T------------GGGGGGT-TCSSHHHHHHHHHH---SC---------
T ss_pred             -HHHHHHHHcCCCHHHHHHHHHhC---C---H------------HHHHHHH-cCCCHHHHHHHHHh---cC---------
Confidence             13466677788888888777632   1   1            1122233 67778888877763   11         


Q ss_pred             hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccc
Q 012897          163 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ  242 (454)
Q Consensus       163 ~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  242 (454)
                           .+.+..+++++++.|+..++..+   .               .+.+..++.++++.||..++..+          
T Consensus       148 -----~~~l~~l~~D~d~~VR~~aa~~l---~---------------~~ll~~ll~D~d~~VR~aaa~~l----------  194 (244)
T 1lrv_A          148 -----PGRLFRFMRDEDRQVRKLVAKRL---P---------------EESLGLMTQDPEPEVRRIVASRL----------  194 (244)
T ss_dssp             -----GGGGGGTTTCSCHHHHHHHHHHS---C---------------GGGGGGSTTCSSHHHHHHHHHHC----------
T ss_pred             -----HHHHHHHHcCCCHHHHHHHHHcC---C---------------HHHHHHHHcCCCHHHHHHHHHhC----------
Confidence                 12344566778888888877641   1               13445677888888888887653          


Q ss_pred             hhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHH
Q 012897          243 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAIS  318 (454)
Q Consensus       243 ~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~  318 (454)
                              ..+.|..++.++ ++.||..++..++                  .+.|..+ +++++.|+..+...|+
T Consensus       195 --------~~~~L~~Ll~D~-d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L~  242 (244)
T 1lrv_A          195 --------RGDDLLELLHDP-DWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRLG  242 (244)
T ss_dssp             --------CGGGGGGGGGCS-SHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred             --------CHHHHHHHHcCC-CHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence                    124567778888 8889988877643                  2345445 7778889888876543

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.61  E-value=0.0022  Score=55.11  Aligned_cols=180  Identities=15%  Similarity=0.076  Sum_probs=122.5

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc---hhhhhhHHHHHHHHHHhhc----CC
Q 012897           83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN---ERAKLSMLRNATWTLSNFC----RG  155 (454)
Q Consensus        83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~----~~  155 (454)
                      +=+.+...|-+.+..-+..++..|.......+.   .+..  .+..+++-+.   .+.+..+...++.+|..+.    ..
T Consensus        47 ~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~  121 (266)
T 2of3_A           47 AKVSLMSQLFHKDFKQHLAALDSLVRLADTSPR---SLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDT  121 (266)
T ss_dssp             BCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            345566666677778788788777776543332   2211  2333333221   3557777777777777664    22


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHh
Q 012897          156 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI  235 (454)
Q Consensus       156 ~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  235 (454)
                      ...........++|.|+.-+.+..+.+|..+-.++..++.-.+.       ..+++.++.-+++.++..|..++..++.+
T Consensus       122 ~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~l  194 (266)
T 2of3_A          122 ETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYY  194 (266)
T ss_dssp             TCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            22222223367889999999999999998888887766532221       13567788888999999999999999999


Q ss_pred             hccCccchhhhhccCCh---HHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897          236 VTGDDFQTQCIITYGAL---PYLLGLLTHSHKKSIKKEACWTISNITA  280 (454)
Q Consensus       236 ~~~~~~~~~~~~~~~~l---~~L~~~L~~~~~~~v~~~a~~~L~nl~~  280 (454)
                      .......     ....+   +.+..++.+. +..||..|..++..+-.
T Consensus       195 i~~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          195 ITNAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HHHHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence            8643222     23467   9999999998 99999999999987765

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.53  E-value=0.0045  Score=54.34  Aligned_cols=201  Identities=14%  Similarity=0.109  Sum_probs=147.1

Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh----hHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhh
Q 012897           77 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR----CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF  152 (454)
Q Consensus        77 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~----~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l  152 (454)
                      .+...+.+..|+..|..-+.+.|..+..++.++.+....    ..+.+..  -...+..++....++++.-.+-..|+..
T Consensus        73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRec  150 (341)
T 1upk_A           73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC  150 (341)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence            445568899999999998999999999999999865432    2223332  2344444443445666666777777777


Q ss_pred             cCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhcCCCCCcchhhHH
Q 012897          153 CRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLGHPSPSVLIPAL  229 (454)
Q Consensus       153 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~i~~L~~ll~~~~~~v~~~a~  229 (454)
                      .++..........+.+..+...++.++-++...|..++..+...+......++..   .++...-.++.+++.-++..++
T Consensus       151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl  230 (341)
T 1upk_A          151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  230 (341)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence            7664434444445566678888899999999999999998876666555555554   3567777889999999999999


Q ss_pred             HHHhHhhccCcc---chhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897          230 RTVGNIVTGDDF---QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  280 (454)
Q Consensus       230 ~~L~~l~~~~~~---~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~  280 (454)
                      ..|+.+......   ..+.+-+..-+..++.+|++. +..++.+|..++.-+..
T Consensus       231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVA  283 (341)
T 1upk_A          231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA  283 (341)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeee
Confidence            999999864321   123334556789999999999 99999999999987776

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.43  E-value=0.00012  Score=68.10  Aligned_cols=237  Identities=17%  Similarity=0.119  Sum_probs=145.8

Q ss_pred             cccCCCHHHHHHHHHHHHHHhccCCCCcHHH-HHHcCCHHHHHHhhc---------CCCChhHHHHHHHHHHHhcCCCch
Q 012897            4 GVWSDDSSLQLEATTQFRKLLSIERSPPIEE-VIQSGVVPRFVEFLM---------REDYPQLQFEAAWALTNIASGTSE   73 (454)
Q Consensus         4 ~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~~~l~~L~~lL~---------~~~~~~v~~~a~~~L~~l~~~~~~   73 (454)
                      .|-++.+++|..|+-+|+.++.......... -....+.-.++-.+.         +.--..||+.|+++|+.+ ..-+.
T Consensus       182 DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~  260 (800)
T 3oc3_A          182 NLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIG  260 (800)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSC
T ss_pred             HhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCCh
Confidence            4568899999999999999987642110000 000022223333222         111246899999999999 63443


Q ss_pred             hhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhc
Q 012897           74 NTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC  153 (454)
Q Consensus        74 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  153 (454)
                      .      ..++..++..+..+..++|..++..|.-+.   +-...   -.++++.++..| .+.+++|+..|+.+|.-++
T Consensus       261 e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~---Ld~Vv~aVL~GL-~D~DDDVRAVAAetLiPIA  327 (800)
T 3oc3_A          261 P------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED---KDGLCRKLVSLL-SSPDEDIKLLSAELLCHFP  327 (800)
T ss_dssp             S------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC---HHHHHHHHHHHT-TCSSHHHHHHHHHHHTTSC
T ss_pred             h------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH---HHHHHHHHHhhc-CCcccHHHHHHHHHhhhhc
Confidence            3      345566666667788999999999988771   11111   122466677777 6778999999999999988


Q ss_pred             CCCCCCChhhhhchHHHHHHhhcCCC--hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHH
Q 012897          154 RGKPQPPFDQVRPALPALAQLVHSND--EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT  231 (454)
Q Consensus       154 ~~~~~~~~~~~~~~l~~l~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~  231 (454)
                            .......++..+-.+|.+-|  .......+..|+.++......   ......+|.|.+++.++-..||.+++.+
T Consensus       328 ------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHtITSVR~AVL~T  398 (800)
T 3oc3_A          328 ------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSPVPEVRTSILNM  398 (800)
T ss_dssp             ------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCSSHHHHHHHHHH
T ss_pred             ------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCCcHHHHHHHHHH
Confidence                  11234556666666665432  122344444555555433210   1113789999999999999999999999


Q ss_pred             HhHhhccCccchhhhhccCChHHHHH-hhcCCcchhHHHHHHHHH
Q 012897          232 VGNIVTGDDFQTQCIITYGALPYLLG-LLTHSHKKSIKKEACWTI  275 (454)
Q Consensus       232 L~~l~~~~~~~~~~~~~~~~l~~L~~-~L~~~~~~~v~~~a~~~L  275 (454)
                      +..+.           ...++..+.+ +|-.. +.+++..+..+-
T Consensus       399 L~tfL-----------~~~~LRLIFQNILLE~-neeIl~lS~~VW  431 (800)
T 3oc3_A          399 VKNLS-----------EESIDFLVAEVVLIEE-KDEIREMAIKLL  431 (800)
T ss_dssp             TTTCC-----------CHHHHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred             HHHHH-----------hhhHHHHHHHHHHhCC-cHHHHHHHHHHH
Confidence            98877           1123333333 33334 666766655444

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.40  E-value=0.0018  Score=56.91  Aligned_cols=188  Identities=12%  Similarity=0.136  Sum_probs=124.8

Q ss_pred             HHHhcCCCCCcchhhHHHHHhHhhccCccch--hhhh--ccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCC------
Q 012897          213 LVELLGHPSPSVLIPALRTVGNIVTGDDFQT--QCII--TYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN------  282 (454)
Q Consensus       213 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~--~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~------  282 (454)
                      +-..+.+.++..|..++..+..+....+...  ....  -....+.+-..+.+. +..+...++.++..++...      
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            5677899999999999999988775433211  0111  113456677788777 9999999999999887521      


Q ss_pred             HHHHHHHHhCCChHHHHHH-hhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHH
Q 012897          283 RDQIQAVIDAGLVGPLVNL-LQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLE  361 (454)
Q Consensus       283 ~~~~~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~  361 (454)
                      .......+ ..+++.|++- +.+....++..+..++..++.......       .+++.+...+++.+|+++..++..|.
T Consensus        93 ~~~~~~~~-~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-------~~~e~l~~~l~~Knpkv~~~~l~~l~  164 (278)
T 4ffb_C           93 NAHNITLI-STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-------QSVELVIPFFEKKLPKLIAAAANCVY  164 (278)
T ss_dssp             HHHHHHHH-HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-------HHHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred             cchhHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-------HHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            11111122 3456666653 566678888888888887765432111       13567778899999999999999999


Q ss_pred             HHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 012897          362 NILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL  420 (454)
Q Consensus       362 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  420 (454)
                      +++.......        .+ ....+  ..+++.+..+.++.+++|+..|..++-.++.
T Consensus       165 ~~l~~fg~~~--------~~-~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          165 ELMAAFGLTN--------VN-VQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHHHHTTTT--------CC-HHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCCc--------CC-chhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            9987533211        10 11111  1234567788899999999999998776654

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=97.32  E-value=3.8e-05  Score=65.54  Aligned_cols=185  Identities=16%  Similarity=0.133  Sum_probs=127.4

Q ss_pred             HhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCC
Q 012897           46 EFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA  125 (454)
Q Consensus        46 ~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  125 (454)
                      .++.+++ +.+|..++..+                  ....+..+++++++.+|..++..+   .               
T Consensus        57 ~ll~d~~-~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L---~---------------   99 (244)
T 1lrv_A           57 QYLADPF-WERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRL---P---------------   99 (244)
T ss_dssp             GGTTCSS-HHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTS---C---------------
T ss_pred             HHhcCCC-HHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHC---C---------------
Confidence            4557777 89998888743                  123467778889999999888642   1               


Q ss_pred             hHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHH
Q 012897          126 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVI  205 (454)
Q Consensus       126 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  205 (454)
                      .+.+..++ .+++..|+..+...+   .              .+.+..++.++++.|+..+...+   .           
T Consensus       100 ~~~L~~ll-~D~d~~VR~~aA~~l---~--------------~~~L~~L~~D~d~~VR~~aA~~l---~-----------  147 (244)
T 1lrv_A          100 REQLSALM-FDEDREVRITVADRL---P--------------LEQLEQMAADRDYLVRAYVVQRI---P-----------  147 (244)
T ss_dssp             SGGGGGTT-TCSCHHHHHHHHHHS---C--------------TGGGGGGTTCSSHHHHHHHHHHS---C-----------
T ss_pred             HHHHHHHH-cCCCHHHHHHHHHhC---C--------------HHHHHHHHcCCCHHHHHHHHHhc---C-----------
Confidence            12234444 778889998888743   1              02345667888999998887631   1           


Q ss_pred             HhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHH
Q 012897          206 EAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ  285 (454)
Q Consensus       206 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~  285 (454)
                          .+.+..+++++++.||..++..+.                  .+.+..+++++ ++.||..++..+          
T Consensus       148 ----~~~l~~l~~D~d~~VR~~aa~~l~------------------~~ll~~ll~D~-d~~VR~aaa~~l----------  194 (244)
T 1lrv_A          148 ----PGRLFRFMRDEDRQVRKLVAKRLP------------------EESLGLMTQDP-EPEVRRIVASRL----------  194 (244)
T ss_dssp             ----GGGGGGTTTCSCHHHHHHHHHHSC------------------GGGGGGSTTCS-SHHHHHHHHHHC----------
T ss_pred             ----HHHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHHHcCC-CHHHHHHHHHhC----------
Confidence                124456778899999999887521                  13444677777 999999988652          


Q ss_pred             HHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHH
Q 012897          286 IQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL  360 (454)
Q Consensus       286 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L  360 (454)
                              ..+.|..++.++++.||..++..+.                   .+.|..+ +++++.|+..+...|
T Consensus       195 --------~~~~L~~Ll~D~d~~VR~~aa~~l~-------------------~~~L~~L-~D~~~~VR~aa~~~L  241 (244)
T 1lrv_A          195 --------RGDDLLELLHDPDWTVRLAAVEHAS-------------------LEALREL-DEPDPEVRLAIAGRL  241 (244)
T ss_dssp             --------CGGGGGGGGGCSSHHHHHHHHHHSC-------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred             --------CHHHHHHHHcCCCHHHHHHHHHcCC-------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence                    1345777889999999999988853                   2345556 888999998876543

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=97.14  E-value=0.0056  Score=51.27  Aligned_cols=185  Identities=16%  Similarity=0.144  Sum_probs=124.2

Q ss_pred             CHHHHHHHHHHHHHHhccCCCCcHH--HHHHcCCHHHHHHh-------hcCCC-Ch---hHHHHHHHHHHHhcCCCchhh
Q 012897            9 DSSLQLEATTQFRKLLSIERSPPIE--EVIQSGVVPRFVEF-------LMRED-YP---QLQFEAAWALTNIASGTSENT   75 (454)
Q Consensus         9 d~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~~~l~~L~~l-------L~~~~-~~---~v~~~a~~~L~~l~~~~~~~~   75 (454)
                      +|+.|..|+..|.+--..  .+...  ....-|.+..|++=       +..+. ..   .-...|+..|-.++. +++.+
T Consensus        14 ~p~~Re~AL~eLsk~Re~--~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr   90 (268)
T 2fv2_A           14 SPETRENALLELSKKRES--VPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETR   90 (268)
T ss_dssp             STTTHHHHHHHHHHHTTT--CTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTH
T ss_pred             CchhHHHHHHHHHHhhhc--cccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-Ccchh
Confidence            456688888888775443  23332  23345666666542       22221 01   112444555566676 89999


Q ss_pred             HHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhh-CCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHH
Q 012897           76 KVVIDHGAVPIFVKLLASPS-----DDVREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTL  149 (454)
Q Consensus        76 ~~~~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L  149 (454)
                      ..+++..+.-.|..+|+..+     +-+|-.++.+++.+. .++++.-..+...++++..++.+ +..++-.+..|..++
T Consensus        91 ~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrim-e~GselSKtvAtfIl  169 (268)
T 2fv2_A           91 SAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIM-ESGSELSKTVATFIL  169 (268)
T ss_dssp             HHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHH-HHSCHHHHHHHHHHH
T ss_pred             hHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHH-hhccHHHHHHHHHHH
Confidence            99999998888888887532     678999999999988 45666777888899999999999 666777777888888


Q ss_pred             HhhcCCCCC--------CChhhhhchHHHHH-HhhcCCChhHHHHHHHHHHHhccCC
Q 012897          150 SNFCRGKPQ--------PPFDQVRPALPALA-QLVHSNDEEVLTDACWALSYLSDGT  197 (454)
Q Consensus       150 ~~l~~~~~~--------~~~~~~~~~l~~l~-~ll~~~~~~v~~~a~~~L~~l~~~~  197 (454)
                      ..+..++..        ..+.....++..++ .+.+++++.+..++++|...++.+.
T Consensus       170 qKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~  226 (268)
T 2fv2_A          170 QKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP  226 (268)
T ss_dssp             HHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred             HHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence            777765411        11222233443333 3446778899999999999998764

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.10  E-value=0.028  Score=58.71  Aligned_cols=297  Identities=12%  Similarity=0.114  Sum_probs=154.5

Q ss_pred             CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHH-HHhhcCCCChhHHHHHHHHHHHhcCCC-chhhHHHHh--CC
Q 012897            7 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF-VEFLMREDYPQLQFEAAWALTNIASGT-SENTKVVID--HG   82 (454)
Q Consensus         7 s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L-~~lL~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~--~g   82 (454)
                      +.++++...++.+|..+++=-   ....+++.+.++.+ ..+|.  + +.++..|+.||..+.... ++....+..  .+
T Consensus       218 ~~~~~lv~~~L~~L~~~~sWI---~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~  291 (1073)
T 3gjx_A          218 SQNAPLVHATLETLLRFLNWI---PLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL  291 (1073)
T ss_dssp             CCCHHHHHHHHHHHHHHTTTS---CTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHhc---CHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            457788888888888887552   35667788888888 46653  4 789999999999988632 222222211  12


Q ss_pred             ChHHHHHhh-------------CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc-C-------ChHHHHHHhchhhhhhH
Q 012897           83 AVPIFVKLL-------------ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQ-G-------ALIPLLAQLNERAKLSM  141 (454)
Q Consensus        83 ~i~~L~~lL-------------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~-------~i~~l~~~l~~~~~~~~  141 (454)
                      ++..+..++             ...+.+.....+.++..+...   +...+... +       ++..++.+- ..++.++
T Consensus       292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~---~~~lIe~~p~~~~~l~~~l~~ll~~s-~~~d~ei  367 (1073)
T 3gjx_A          292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKE---HGQLLEKRLNLREALMEALHYMLLVS-EVEETEI  367 (1073)
T ss_dssp             HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHH---HHHHHHHCGGGHHHHHHHHHHHHHHT-TCSCHHH
T ss_pred             HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHH---HHHHHhcCccchHHHHHHHHHHHHHh-CCCcHHH
Confidence            222222222             112345555555666555421   11222111 1       122233333 4456777


Q ss_pred             HHHHHHHHHhhcCC----CC-----C----------C--ChhhhhchHHH----HHHhhcCCC-----------------
Q 012897          142 LRNATWTLSNFCRG----KP-----Q----------P--PFDQVRPALPA----LAQLVHSND-----------------  179 (454)
Q Consensus       142 ~~~a~~~L~~l~~~----~~-----~----------~--~~~~~~~~l~~----l~~ll~~~~-----------------  179 (454)
                      ...++..-..|..+    .+     .          .  ......+++..    ++.-+..+.                 
T Consensus       368 ~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~  447 (1073)
T 3gjx_A          368 FKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFM  447 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHH
Confidence            66666554433321    11     0          0  01112333333    333333221                 


Q ss_pred             ---h-----hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--CCCcchhhHHHHHhHhhccCccchhhhhcc
Q 012897          180 ---E-----EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLIPALRTVGNIVTGDDFQTQCIITY  249 (454)
Q Consensus       180 ---~-----~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  249 (454)
                         .     ++.+.++..+.++..  .+...     -..+.+...+..  .++...++++++++.++..-....+.-.=.
T Consensus       448 ~d~~~~~ly~~mrd~L~~lt~l~~--~~~~~-----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp  520 (1073)
T 3gjx_A          448 KDTDSINLYKNMRETLVYLTHLDY--VDTEI-----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV  520 (1073)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHCH--HHHHH-----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred             hhcchHHHHHHHHHHHHHHhcCCH--HHHHH-----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH
Confidence               1     122223333332221  11111     123334433433  357788999999999984333211111112


Q ss_pred             CChHHHHHhhcCCc--c--hhHHHHHHHHHHHHhc---CCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897          250 GALPYLLGLLTHSH--K--KSIKKEACWTISNITA---GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS  322 (454)
Q Consensus       250 ~~l~~L~~~L~~~~--~--~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  322 (454)
                      .+++.|+.+..++.  +  ..++...+|+++..+.   ..++..     ..++..+++.+.+.++.|+..|+.++..++.
T Consensus       521 ~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L-----~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~  595 (1073)
T 3gjx_A          521 TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFL-----KTVVNKLFEFMHETHDGVQDMACDTFIKIAQ  595 (1073)
T ss_dssp             HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH-----HHHHHHHHHHTTCCSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            45666666664431  2  2355566789988765   233322     2357778888888899999999999999987


Q ss_pred             CCC
Q 012897          323 GGT  325 (454)
Q Consensus       323 ~~~  325 (454)
                      .+.
T Consensus       596 ~C~  598 (1073)
T 3gjx_A          596 KCR  598 (1073)
T ss_dssp             HTG
T ss_pred             HHH
Confidence            543

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.96  E-value=0.034  Score=46.67  Aligned_cols=185  Identities=11%  Similarity=0.143  Sum_probs=123.6

Q ss_pred             ChhHHHHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHh-------cCCCCCc-----chhhHHHHHhHhhccCccchhh
Q 012897          179 DEEVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVEL-------LGHPSPS-----VLIPALRTVGNIVTGDDFQTQC  245 (454)
Q Consensus       179 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~l-------l~~~~~~-----v~~~a~~~L~~l~~~~~~~~~~  245 (454)
                      +++.|+.|+.-|+.--+..++..-.+.. .|.+..+++=       +..+.-.     -..+|+..+..++. .++.+..
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~   92 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSA   92 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhH
Confidence            5566888877776654444444333333 3555554432       2222111     11345555555665 4556778


Q ss_pred             hhccCChHHHHHhhcCCc----chhHHHHHHHHHHHHhc-CCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHh
Q 012897          246 IITYGALPYLLGLLTHSH----KKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA  320 (454)
Q Consensus       246 ~~~~~~l~~L~~~L~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  320 (454)
                      +++.++.-.|..+|....    ...+|-.+.++++.+.. ++++.+..+++.+++|..++.++.++.--|.-|...+..+
T Consensus        93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI  172 (268)
T 2fv2_A           93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI  172 (268)
T ss_dssp             HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            899999888888886542    35689999999999987 6788898999999999999999999999999999999998


Q ss_pred             cCCCCHHHHHHHHH--------cCCcHHH-hhccCCCCHHHHHHHHHHHHHHHHh
Q 012897          321 TSGGTHEQIKYLVR--------EGCIKPL-CDLFVCPDPRIVTVCLEGLENILKV  366 (454)
Q Consensus       321 ~~~~~~~~~~~l~~--------~~~i~~L-~~~l~~~~~~v~~~al~~L~~l~~~  366 (454)
                      ..  ++....++..        ..++..+ ..+.+.+.+.+.+++++|-.++...
T Consensus       173 L~--dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn  225 (268)
T 2fv2_A          173 LL--DDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN  225 (268)
T ss_dssp             HH--SHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred             hc--cchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence            87  3444444322        1122222 2344567788888888888777643

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=96.82  E-value=0.089  Score=46.15  Aligned_cols=293  Identities=13%  Similarity=0.127  Sum_probs=170.7

Q ss_pred             HHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhc-CCChhHHH
Q 012897          106 LGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-SNDEEVLT  184 (454)
Q Consensus       106 L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~v~~  184 (454)
                      |.++..+.+..-+-+...+++..+...+ ..++.++.+..+..|...+... .....-....+|.++..++ ++++++..
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~h~eDdvvY  343 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEIHPDDEVIY  343 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhccCCCcceEE
Confidence            3444455555556677788888888888 6778899999999998887653 1222233677888888775 67899999


Q ss_pred             HHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC-------CCcchhhHHHHHhHhhcc------------C------
Q 012897          185 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP-------SPSVLIPALRTVGNIVTG------------D------  239 (454)
Q Consensus       185 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-------~~~v~~~a~~~L~~l~~~------------~------  239 (454)
                      .....|+|+..+.....+..+..+.+..|-..+...       +..-+..||.+++|..+.            +      
T Consensus       344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~  423 (619)
T 3c2g_A          344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA  423 (619)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred             ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence            999999999999888878788889988888776331       222234444444443310            0      


Q ss_pred             ----ccchhhhhccCChHHHHHhhcCCc-----chhHHHHHHHHHHHHhcCC---HHHH----HHHHhCCChHHHHHHhh
Q 012897          240 ----DFQTQCIITYGALPYLLGLLTHSH-----KKSIKKEACWTISNITAGN---RDQI----QAVIDAGLVGPLVNLLQ  303 (454)
Q Consensus       240 ----~~~~~~~~~~~~l~~L~~~L~~~~-----~~~v~~~a~~~L~nl~~~~---~~~~----~~l~~~~~i~~L~~ll~  303 (454)
                          ..+...+++..+++.|+.+|+-+.     -.++|......+--+.+..   .+..    ....+.+.+..++-.+.
T Consensus       424 G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pkd~~l~VtDd~rk~NLvGHIciA~s  503 (619)
T 3c2g_A          424 GPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPKDGVLNVIDENRKENLIGHICAAYS  503 (619)
T ss_dssp             CHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCCTTGGGCCCTTTCCCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCchhhhccccchhhhhhhHHHHHHHHH
Confidence                012334566678888988886541     2355666655554444321   0100    01112334444433321


Q ss_pred             ---h--c-------chhhHHHHHHHHHHhcCCC-CHHH-HHHHHHcCCcHHHhhccCCC--CHHHHHHHHHHHHHHHHhh
Q 012897          304 ---N--A-------EFDIKKEAAWAISNATSGG-THEQ-IKYLVREGCIKPLCDLFVCP--DPRIVTVCLEGLENILKVG  367 (454)
Q Consensus       304 ---~--~-------~~~v~~~a~~aL~~l~~~~-~~~~-~~~l~~~~~i~~L~~~l~~~--~~~v~~~al~~L~~l~~~~  367 (454)
                         .  .       ...+.+.+...|..+.+.. ++.+ ..++   -.+..=..+++..  .|.....++..=.++++.+
T Consensus       504 Wa~~Q~tNertqdTkqQLiER~fSLL~~LmEQc~~E~qVAh~~---YsIsCPLnlLn~nQ~KP~FI~NVL~VcDKILeHc  580 (619)
T 3c2g_A          504 WVFRQPNNTRTQSTKQQLVERTISLLLVLMEQCGAEKEVAQYS---YSIDCPLNLLNGNQVKPTFIHNVLVVCDKILEHC  580 (619)
T ss_dssp             HHHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTT---TTSCCGGGGGSSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             HhhcCccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhe---eeccCchhhhcccccChHHHHHHHHHHHHHHHhC
Confidence               0  1       1223344444554444432 2222 1111   2244445566643  4666666666666666655


Q ss_pred             hhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 012897          368 EAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETY  418 (454)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~  418 (454)
                      +....    +|..  ++         ..++-+.+|.|+++.+.|..++.++
T Consensus       581 P~~Ad----~W~i--~r---------~tle~l~NHsNsDIa~aasSLL~rf  616 (619)
T 3c2g_A          581 PTRAD----IWTI--DR---------PMLEGLTNHRNSDIAKAANSLLSRF  616 (619)
T ss_dssp             TTHHH----HSCC--CH---------HHHHHHHTCSSHHHHHHHHHHHTTS
T ss_pred             cchhc----ccee--ch---------HHHHHHhcCCCchHHHHHHHHHHhC
Confidence            43211    0000  11         2345667999999999999888765

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=96.56  E-value=0.018  Score=48.82  Aligned_cols=141  Identities=12%  Similarity=0.082  Sum_probs=99.5

Q ss_pred             chhHHHHHHHHHHHHhcCCHHHHHHHH-hCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCC----HH-HHHHH-----
Q 012897          264 KKSIKKEACWTISNITAGNRDQIQAVI-DAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGT----HE-QIKYL-----  332 (454)
Q Consensus       264 ~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~----~~-~~~~l-----  332 (454)
                      +......++.||..+... ......++ ..+.+..+...+.++++.++..++..|..++....    .+ ....+     
T Consensus        67 ~~~~~~~~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~  145 (233)
T 2f31_A           67 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE  145 (233)
T ss_dssp             HHHHHHHHHHHHHHHTSS-HHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCC-hHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence            345677888888888754 55555666 45678888888988899999999998888776543    11 11111     


Q ss_pred             -HHcCCcHHHhhccC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHH
Q 012897          333 -VREGCIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEK  410 (454)
Q Consensus       333 -~~~~~i~~L~~~l~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~  410 (454)
                       .+..-...+++.++ ..+.+.+..++..+..++...+...       .--..+..|...|..+.+.++...+++++...
T Consensus       146 ~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~-------~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Q  218 (233)
T 2f31_A          146 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD-------FRVHIRSELMRLGLHQVLQELREIENEDMKVQ  218 (233)
T ss_dssp             HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH-------HHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHH
T ss_pred             hCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHH-------HHHHHHHHHHHCChHHHHHHHhccCCHHHHHH
Confidence             12234566777776 4567888888888888887765433       22236778889999999999999899887666


Q ss_pred             HH
Q 012897          411 AV  412 (454)
Q Consensus       411 a~  412 (454)
                      ..
T Consensus       219 i~  220 (233)
T 2f31_A          219 LC  220 (233)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=96.54  E-value=0.17  Score=44.53  Aligned_cols=198  Identities=14%  Similarity=0.072  Sum_probs=138.6

Q ss_pred             HHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccc----hhhhhc-cCChHHHHHhhcCCcchhHHHHHHHHHH
Q 012897          202 QAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ----TQCIIT-YGALPYLLGLLTHSHKKSIKKEACWTIS  276 (454)
Q Consensus       202 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~----~~~~~~-~~~l~~L~~~L~~~~~~~v~~~a~~~L~  276 (454)
                      +.+...+++..|+..|..=+.+.|..+..+..++.+.....    ...+.. ..++..|+....   ++++--.+...|.
T Consensus        72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe---~~diAl~~G~mLR  148 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIMLR  148 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc---cchhHhHHHHHHH
Confidence            44666788999999998888889999999999998754422    222222 234444444444   3445555556666


Q ss_pred             HHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHc---CCcHHHhhccCCCCHHHH
Q 012897          277 NITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVRE---GCIKPLCDLFVCPDPRIV  353 (454)
Q Consensus       277 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~---~~i~~L~~~l~~~~~~v~  353 (454)
                      -++.. +...+.++..+.+..+.+.++.++.++...|..++..+... .+.....+...   .+......++.+++.-++
T Consensus       149 ecir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~-Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTk  226 (341)
T 1upk_A          149 ECIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTR-HKLLSAEFLEQHYDRFFSEYEKLLHSENYVTK  226 (341)
T ss_dssp             HHHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHH
T ss_pred             HHHHh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhc-cHHHHHHHHHHhHHHHHHHHHHHhcCCcchhH
Confidence            66654 66666777888888999999999999999999999988775 44444444443   346777889999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHH
Q 012897          354 TVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKI  414 (454)
Q Consensus       354 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~  414 (454)
                      ..++..|+.++-...+..-          -...+.+..-++.+..++.+++..++-.|-.+
T Consensus       227 RQSlKLLgelLldr~N~~v----------M~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhV  277 (341)
T 1upk_A          227 RQSLKLLGELLLDRHNFTI----------MTKYISKPENLKLMMNLLRDKSRNIQFEAFHV  277 (341)
T ss_dssp             HHHHHHHHHHHHSGGGHHH----------HHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCchHHHH----------HHHHhCCHHHHHHHHHHhcCchhchhhhhhhh
Confidence            9999999999876544321          23344455556677778888887776666554

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=96.51  E-value=0.023  Score=49.75  Aligned_cols=174  Identities=14%  Similarity=0.188  Sum_probs=119.4

Q ss_pred             HHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHH
Q 012897          190 LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKK  269 (454)
Q Consensus       190 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~  269 (454)
                      |.++.-++...++-+++.+++..+...++.++.++..+.++.|-..+.... ....-+ ...++.++..+.-..+.++..
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaks-L~~t~L-~e~LPFi~~~i~~h~eDdvvY  343 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKA-LAKTPL-ENILPFLLRLIEIHPDDEVIY  343 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGG-GGTSCC-TTHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHH-Hhhccc-cccchHHHHHhccCCCcceEE
Confidence            345555667788999999999999999999999999999999988875332 111111 256788888876444889999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc-------chhhHHHHHHHHHH-------hcC------CC-----
Q 012897          270 EACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA-------EFDIKKEAAWAISN-------ATS------GG-----  324 (454)
Q Consensus       270 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-------~~~v~~~a~~aL~~-------l~~------~~-----  324 (454)
                      ...+.|+|...+........+.+|.++.|...+...       +..-++.|+..++|       +.-      ++     
T Consensus       344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~  423 (619)
T 3c2g_A          344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA  423 (619)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred             ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence            999999999998777666667899999999887542       22334444444444       322      11     


Q ss_pred             ---CHHHHHHHHHcCCcHHHhhccCCCC------HHHHHHHHHHHHHHHH
Q 012897          325 ---THEQIKYLVREGCIKPLCDLFVCPD------PRIVTVCLEGLENILK  365 (454)
Q Consensus       325 ---~~~~~~~l~~~~~i~~L~~~l~~~~------~~v~~~al~~L~~l~~  365 (454)
                         +.++...+++.++++.|+.+++.+.      -+++...+..+.-+++
T Consensus       424 G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlR  473 (619)
T 3c2g_A          424 GPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLR  473 (619)
T ss_dssp             CHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhc
Confidence               2334445566678888888887543      2455555555444443

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.48  E-value=0.14  Score=47.25  Aligned_cols=123  Identities=16%  Similarity=0.124  Sum_probs=93.0

Q ss_pred             CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHH
Q 012897           94 PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQ  173 (454)
Q Consensus        94 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~  173 (454)
                      +++..+..|...|.....+-|...+..     +..++.++ .+.+..+|..|+..|..+|.+      .....+..+|++
T Consensus        40 g~~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q  107 (507)
T 3u0r_A           40 GGTKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ  107 (507)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence            578999999999999988888776663     77889999 788899999999999999976      336778889999


Q ss_pred             hhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhh
Q 012897          174 LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV  236 (454)
Q Consensus       174 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~  236 (454)
                      +|.++++.-...+-.+|..+...++..        .+..+...+..+++.+|+.++..|..=.
T Consensus       108 lLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~kl  162 (507)
T 3u0r_A          108 LLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLSTKL  162 (507)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHHHG
T ss_pred             HHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence            999998877777777777766554422        2333333333356788888887775444

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.46  E-value=0.55  Score=43.46  Aligned_cols=253  Identities=11%  Similarity=0.031  Sum_probs=142.3

Q ss_pred             HHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc
Q 012897           44 FVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQ  123 (454)
Q Consensus        44 L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  123 (454)
                      ++...+ ++ +..+..|++.+.......|+..+.     ++..++.+..+.+..+|.+|++.|..+|.+  .....    
T Consensus        34 Il~~~k-g~-~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~k----  100 (507)
T 3u0r_A           34 ILDGVK-GG-TKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPR----  100 (507)
T ss_dssp             HHHGGG-SC-HHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHH----
T ss_pred             HHHhcC-CC-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhh----
Confidence            444333 35 789999999999999988887766     478999999999999999999999999987  33333    


Q ss_pred             CChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC-ChHHHH
Q 012897          124 GALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG-TNDKIQ  202 (454)
Q Consensus       124 ~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~  202 (454)
                       +...|+++| +..++.-...+-.+|..+...++       .+.+..+..-+.++++.+|+.++..|..-... ..+...
T Consensus       101 -iaDvL~QlL-qtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~  171 (507)
T 3u0r_A          101 -VADILTQLL-QTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLT  171 (507)
T ss_dssp             -HHHHHHHHT-TCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSC
T ss_pred             -HHHHHHHHH-hccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhcc
Confidence             366788888 44454444555555555544321       35556666666667899999999888653321 111111


Q ss_pred             HHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc-cchhhhhccCChHHHHHhh------cCCcchhHHHHHHHHH
Q 012897          203 AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD-FQTQCIITYGALPYLLGLL------THSHKKSIKKEACWTI  275 (454)
Q Consensus       203 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~~L------~~~~~~~v~~~a~~~L  275 (454)
                      .-.+.-++..+...|.+-...--.-.+.+|..+-.... ...+     .+++.+....      ... +.+.-.....++
T Consensus       172 ~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~q-----eLv~ii~eQa~L~~~f~~s-D~e~vdRlI~C~  245 (507)
T 3u0r_A          172 KEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQ-----QLVELVAEQADLEQTFNPS-DPDCVDRLLQCT  245 (507)
T ss_dssp             HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHH-----HHHHHHHHHHTTTSCCCSS-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHH-----HHHHHHHHHHhccCCCCCc-CHHHHHHHHHHH
Confidence            22222344455555543322212223333333322211 1111     1223333322      112 343333333333


Q ss_pred             HHHh----c--CCHHHHHHHHhCCChHHHHHHhhhc-chhhHHHHHHHHHHhcCCCC
Q 012897          276 SNIT----A--GNRDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAISNATSGGT  325 (454)
Q Consensus       276 ~nl~----~--~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~  325 (454)
                      ..-.    .  .+.....++.+ .++|.+-.+-... .++.+...+.++..++....
T Consensus       246 ~~ALP~FS~~v~StkFv~y~~~-kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~  301 (507)
T 3u0r_A          246 RQAVPLFSKNVHSTRFVTYFCE-QVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCG  301 (507)
T ss_dssp             HHHGGGCBTTBCCHHHHHHHHH-HTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHhccCCChHHHHHHHHH-hhccchhhccccccchHHHHHHHHHHHHHccCCC
Confidence            3222    2  34454544443 4777544333321 23477788888888887665

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.40  E-value=0.15  Score=42.36  Aligned_cols=144  Identities=16%  Similarity=0.039  Sum_probs=103.4

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhC-CChhhHH
Q 012897           41 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAG-DSPRCRD  118 (454)
Q Consensus        41 l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~-~~~~~~~  118 (454)
                      ++....+.+++. ..+|..|+..|+.+ ...         ...++.+.. +-.+++..|++.+..++..++. ..++.  
T Consensus        73 ~~la~~L~~~~~-deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--  139 (240)
T 3l9t_A           73 KKLAFLAYQSDV-YQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--  139 (240)
T ss_dssp             HHHHHHHHTCSS-HHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred             HHHHHHHHhCcc-hHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence            344445556666 79999999998887 311         124566666 5556889999999999999884 33321  


Q ss_pred             HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 012897          119 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN  198 (454)
Q Consensus       119 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~  198 (454)
                            .++.+..-. .+++..+++.|+..+.--+...  ........++|.+-.+..+++.-|+..+.+.|..++..++
T Consensus       140 ------~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~~--~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P  210 (240)
T 3l9t_A          140 ------ALPIIDEWL-KSSNLHTRRAATEGLRIWTNRP--YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP  210 (240)
T ss_dssp             ------THHHHHHHH-HCSSHHHHHHHHHHTCSGGGST--TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred             ------HHHHHHHHh-cCCCHHHHHHHHHhhHHHhccc--hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence                  355556555 8889999999998876544321  1222335578888888888999999999999999999998


Q ss_pred             HHHHHHHH
Q 012897          199 DKIQAVIE  206 (454)
Q Consensus       199 ~~~~~~~~  206 (454)
                      +....+++
T Consensus       211 d~V~~~~~  218 (240)
T 3l9t_A          211 DLVKIELK  218 (240)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87666655

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.37  E-value=0.046  Score=45.46  Aligned_cols=143  Identities=10%  Similarity=0.037  Sum_probs=101.0

Q ss_pred             HHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHH-hhcCCChhHHHHHHHHHHHhcc-CChHHHHHHH
Q 012897          128 PLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQ-LVHSNDEEVLTDACWALSYLSD-GTNDKIQAVI  205 (454)
Q Consensus       128 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~-ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~  205 (454)
                      .+...|.+++..+++..|+.+|..+ .        .....++.+.. +...++-.|++.+..++..++. ..++      
T Consensus        74 ~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------  138 (240)
T 3l9t_A           74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------  138 (240)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT------
T ss_pred             HHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH------
Confidence            3444444666679999999988887 2        12457777777 5667788999999999988874 3332      


Q ss_pred             HhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHH
Q 012897          206 EAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ  285 (454)
Q Consensus       206 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~  285 (454)
                        ..++.+.....+++..+|..|...+...+.. +...  .-...+++.+-.+..++ +..||+..+|.|..++..+|+-
T Consensus       139 --~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k--~dp~~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK~~Pd~  212 (240)
T 3l9t_A          139 --KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFK--ENPNEAIRRIADLKEDV-SEYVRKSVGNALRDISKKFPDL  212 (240)
T ss_dssp             --TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTT--TCHHHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred             --HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhh--cCHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhhCHHH
Confidence              2567788899999999999998877654432 1110  00112445555555666 8999999999999999998987


Q ss_pred             HHHHHh
Q 012897          286 IQAVID  291 (454)
Q Consensus       286 ~~~l~~  291 (454)
                      +..+++
T Consensus       213 V~~~~~  218 (240)
T 3l9t_A          213 VKIELK  218 (240)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766664

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=96.00  E-value=0.048  Score=49.90  Aligned_cols=161  Identities=14%  Similarity=0.089  Sum_probs=110.7

Q ss_pred             cchhhhhccCChHHHHHhhcC----------CcchhHHHHHHHHHHHHhcCCHHHHHHHH-hCCChHHHHHHhhhcchhh
Q 012897          241 FQTQCIITYGALPYLLGLLTH----------SHKKSIKKEACWTISNITAGNRDQIQAVI-DAGLVGPLVNLLQNAEFDI  309 (454)
Q Consensus       241 ~~~~~~~~~~~l~~L~~~L~~----------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v  309 (454)
                      ...+.+. .+++..|+.+|..          ..+......++.||..+... ......++ ....+..+...+.+..+.+
T Consensus       101 sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~  178 (383)
T 3eg5_B          101 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNM  178 (383)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHH
T ss_pred             HHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcc-hhhHHHHHcChHHHHHHHHHhCCCchHH
Confidence            3444444 4566777766631          11346677888899888754 45555666 4677899999999999999


Q ss_pred             HHHHHHHHHHhcCCCCH----H-HHHHH------HHcCCcHHHhhccCC-CCHHHHHHHHHHHHHHHHhhhhhhhccCCc
Q 012897          310 KKEAAWAISNATSGGTH----E-QIKYL------VREGCIKPLCDLFVC-PDPRIVTVCLEGLENILKVGEAEKNMGTAT  377 (454)
Q Consensus       310 ~~~a~~aL~~l~~~~~~----~-~~~~l------~~~~~i~~L~~~l~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~  377 (454)
                      +..+...|..++....+    + ....+      .+..-...++..++. .+.+.+..++..+..++...+...      
T Consensus       179 ~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~------  252 (383)
T 3eg5_B          179 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD------  252 (383)
T ss_dssp             HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH------
T ss_pred             HHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHH------
Confidence            99999999888876531    1 11111      122446778888886 577888888888888887665433      


Q ss_pred             ccccHHHHHHHHhccHHHHHHHhcCCCHHHHHH
Q 012897          378 ADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEK  410 (454)
Q Consensus       378 ~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~  410 (454)
                       .--..+..|...|..+.+.++...+++++...
T Consensus       253 -~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Q  284 (383)
T 3eg5_B          253 -FRVHIRSELMRLGLHQVLQELREIENEDMKVQ  284 (383)
T ss_dssp             -HHHHHHHHHHHTTHHHHHHHHTTSCCHHHHHH
T ss_pred             -HHHHHHHHHHHCChHHHHHHHhcCCChhHHHH
Confidence             22236777889999999999988888877654

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=95.71  E-value=0.57  Score=49.23  Aligned_cols=172  Identities=15%  Similarity=0.141  Sum_probs=108.7

Q ss_pred             hHHHHHHhchh---hhhhHHHHHHHHHHhhc----CCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 012897          126 LIPLLAQLNER---AKLSMLRNATWTLSNFC----RGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN  198 (454)
Q Consensus       126 i~~l~~~l~~~---~~~~~~~~a~~~L~~l~----~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~  198 (454)
                      +..+..++...   .++.++..++.+++.|.    .+.+.........+...+...+...+..-+..++.+|+|+...  
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p--  470 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP--  470 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--
Confidence            34445555322   24556666666666554    3333333344556666777777888888889999999998742  


Q ss_pred             HHHHHHHHhCcHHHHHHhcCC-----C--CCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcC-CcchhHHHH
Q 012897          199 DKIQAVIEAGVCPRLVELLGH-----P--SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH-SHKKSIKKE  270 (454)
Q Consensus       199 ~~~~~~~~~~~i~~L~~ll~~-----~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~-~~~~~v~~~  270 (454)
                               ..++.+.+++..     .  ...++..|+++|..++...+..        +-+.+++++.+ ..++++|..
T Consensus       471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~--------v~~il~~i~~n~~e~~EvRia  533 (1056)
T 1lsh_A          471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLNVAIKSELRIR  533 (1056)
T ss_dssp             ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSCHHHHHH
T ss_pred             ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH--------HHHHHHHHhcCCCCChHHHHH
Confidence                     245566666632     1  2357788999999998643322        23567777732 227889999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhh-cchhhHHHHHHHHHHhcCCCCH
Q 012897          271 ACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN-AEFDIKKEAAWAISNATSGGTH  326 (454)
Q Consensus       271 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~  326 (454)
                      |+..|.... .+..         .+..+...+.. .+..|.......|.+++....+
T Consensus       534 A~~~Lm~t~-P~~~---------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P  580 (1056)
T 1lsh_A          534 SCIVFFESK-PSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  580 (1056)
T ss_dssp             HHHHHHHTC-CCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHC-cCHH---------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence            988886442 2222         34445565655 4788888888888888887655

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=95.48  E-value=0.65  Score=49.66  Aligned_cols=283  Identities=10%  Similarity=0.046  Sum_probs=157.7

Q ss_pred             hhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCC-----ChhhHHHHHhcCCh
Q 012897           54 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL--ASPSDDVREQAVWALGNVAGD-----SPRCRDLVLSQGAL  126 (454)
Q Consensus        54 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~~~~~~~i  126 (454)
                      +..|..|-..|.++-. ++         .+...+...|  .+.+..+|..|+.+|.+....     +++.+..+.     
T Consensus        27 ~~~r~~Ae~~L~~~~~-~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-----   91 (1204)
T 3a6p_A           27 QRYRLEALKFCEEFKE-KC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-----   91 (1204)
T ss_dssp             HHHHHHHHHHHHHHHH-HC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-----
T ss_pred             hHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-----
Confidence            6788888888877654 22         2334444433  346789999999999987632     222233322     


Q ss_pred             HHHHHHhchh------hhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC----
Q 012897          127 IPLLAQLNER------AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG----  196 (454)
Q Consensus       127 ~~l~~~l~~~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~----  196 (454)
                      ..++..+...      ....++...+.++..++...-.   .....+++.++.++.+ ++..+..++.+|..++..    
T Consensus        92 ~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p---~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~  167 (1204)
T 3a6p_A           92 NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP---QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTF  167 (1204)
T ss_dssp             HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST---TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc---ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccc
Confidence            2344444222      3577888889999988876411   2245788888888876 556677788888777632    


Q ss_pred             ---ChHHHHH---HHHh---CcHHHHHHhcCC-------------------CCCcchhhHHHHHhHhhccCccchhhhhc
Q 012897          197 ---TNDKIQA---VIEA---GVCPRLVELLGH-------------------PSPSVLIPALRTVGNIVTGDDFQTQCIIT  248 (454)
Q Consensus       197 ---~~~~~~~---~~~~---~~i~~L~~ll~~-------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  248 (454)
                         ...+...   .+..   .++..+..++.+                   .+..++..++.++.++..--+  ...+.+
T Consensus       168 ~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~--~~~i~~  245 (1204)
T 3a6p_A          168 QTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS--MSHITA  245 (1204)
T ss_dssp             CCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC--HHHHHT
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC--HHHHHh
Confidence               1111111   1121   222233333322                   123466677888877664322  122333


Q ss_pred             cC--ChHHHHHhhcCCcchhHHHHHHHHHHHHhcCC--HHHHHHHHhC---CChHHHHHHh--------hhcchhhHHHH
Q 012897          249 YG--ALPYLLGLLTHSHKKSIKKEACWTISNITAGN--RDQIQAVIDA---GLVGPLVNLL--------QNAEFDIKKEA  313 (454)
Q Consensus       249 ~~--~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~~---~~i~~L~~ll--------~~~~~~v~~~a  313 (454)
                      ..  .++.+..++.   ++.++..|+.+|..++...  ++....++..   ..+..++...        .+.+.++.+..
T Consensus       246 ~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l  322 (1204)
T 3a6p_A          246 ENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRL  322 (1204)
T ss_dssp             TTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHH
T ss_pred             ccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHH
Confidence            32  6677776654   4578999999999999733  4433333321   0122344443        22356777777


Q ss_pred             HHHHHHhcCCCCHHHHHHHHH-----------cCCcHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 012897          314 AWAISNATSGGTHEQIKYLVR-----------EGCIKPLCDLFVCPDPRIVTVCLEGLENILK  365 (454)
Q Consensus       314 ~~aL~~l~~~~~~~~~~~l~~-----------~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~  365 (454)
                      +..+..+..    .. ..++.           .++++.+..+..+++..+...++..-..+++
T Consensus       323 ~~ll~~lg~----~l-~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~  380 (1204)
T 3a6p_A          323 CQVLCALGN----QL-CALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFR  380 (1204)
T ss_dssp             HHHHHHHHH----HH-HHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHH----HH-HHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHh
Confidence            777777652    11 11111           1246667777777666666665554444444

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=95.36  E-value=0.23  Score=45.52  Aligned_cols=139  Identities=12%  Similarity=0.080  Sum_probs=98.2

Q ss_pred             chhHHHHHHHHHHHHhcCCHHHHHHHH-hCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHH-----HHHHH-----
Q 012897          264 KKSIKKEACWTISNITAGNRDQIQAVI-DAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHE-----QIKYL-----  332 (454)
Q Consensus       264 ~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~-----~~~~l-----  332 (454)
                      +......++.||..++.. ......++ ....+..+...+.+..+.++..++..|..++....+.     ....+     
T Consensus        71 d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~  149 (386)
T 2bnx_A           71 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE  149 (386)
T ss_dssp             HHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence            446677888888888754 44555555 4567888999998889999999998888777754311     11111     


Q ss_pred             -HHcCCcHHHhhccC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHH
Q 012897          333 -VREGCIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEK  410 (454)
Q Consensus       333 -~~~~~i~~L~~~l~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~  410 (454)
                       .+..-...|++.+. ..+.+.+..++..+..++...+...       .--..+..|...|..+.+..+....++++...
T Consensus       150 ~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~-------~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q  222 (386)
T 2bnx_A          150 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD-------FRVHIRSELMRLGLHQVLQELREIENEDMKVQ  222 (386)
T ss_dssp             HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHH-------HHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred             hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHH-------HHHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence             12234556777776 4566788888888888887766443       22336778999999999999998888887655

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=95.20  E-value=0.37  Score=40.63  Aligned_cols=97  Identities=11%  Similarity=0.127  Sum_probs=69.8

Q ss_pred             HHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCC----C------ChhHHHHHHHHHHHhcCCCchhhHHHHh-CCC
Q 012897           15 EATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE----D------YPQLQFEAAWALTNIASGTSENTKVVID-HGA   83 (454)
Q Consensus        15 ~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~----~------~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~   83 (454)
                      ..+..|...+...+...++.+ ..+++..|+..|..-    .      +.+.+..++.||..+.. +......++. .+.
T Consensus        20 ~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~   97 (233)
T 2f31_A           20 SCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEG   97 (233)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSH
T ss_pred             HHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHH
Confidence            445555555555434556667 456777777776531    1      25678899999999998 5555555554 578


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 012897           84 VPIFVKLLASPSDDVREQAVWALGNVAGDS  113 (454)
Q Consensus        84 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  113 (454)
                      +..+...|.++++.++..++..|..+|...
T Consensus        98 i~~l~~~L~s~~~~~r~~~leLL~~lc~~~  127 (233)
T 2f31_A           98 ILLLVRAMDPAVPNMMIDAAKLLSALCILP  127 (233)
T ss_dssp             HHHHHTTCCTTSHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHHHhCC
Confidence            899999999999999999999999998654

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=95.05  E-value=0.57  Score=42.80  Aligned_cols=141  Identities=12%  Similarity=0.122  Sum_probs=93.8

Q ss_pred             HHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcC----------CCChhHHHHHHHHHHHhcCCCchhhHHHH-hCCC
Q 012897           15 EATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR----------EDYPQLQFEAAWALTNIASGTSENTKVVI-DHGA   83 (454)
Q Consensus        15 ~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~   83 (454)
                      ..+..|+.-+...+...++.++ .+++..|+..|..          ..+...+..++.||..+.. +......++ ....
T Consensus        86 ~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN-~~~G~~~vl~~~~~  163 (383)
T 3eg5_B           86 SCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEG  163 (383)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS-SHHHHHHHHTCSSH
T ss_pred             HHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc-chhhHHHHHcChHH
Confidence            4566666656554344566776 5568888888752          1125788899999999998 555555554 4578


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hh-HHHHH----------hcCChHHHHHHhchhhhhhHHHHHHHHHHh
Q 012897           84 VPIFVKLLASPSDDVREQAVWALGNVAGDSP-RC-RDLVL----------SQGALIPLLAQLNERAKLSMLRNATWTLSN  151 (454)
Q Consensus        84 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~-~~~~~----------~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  151 (454)
                      +..+...+.++++.++..++..|..+|.... .. ...++          +..-+..++..+....+.+.+..++..+-.
T Consensus       164 i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~  243 (383)
T 3eg5_B          164 ILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINA  243 (383)
T ss_dssp             HHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHH
Confidence            9999999999999999999999999996553 21 22222          223456666666444556666666666666


Q ss_pred             hcCCCC
Q 012897          152 FCRGKP  157 (454)
Q Consensus       152 l~~~~~  157 (454)
                      +....+
T Consensus       244 li~~~~  249 (383)
T 3eg5_B          244 LITPAE  249 (383)
T ss_dssp             HHTTCC
T ss_pred             HHcCCC
Confidence            665543

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=95.04  E-value=2.8  Score=44.80  Aligned_cols=289  Identities=9%  Similarity=0.044  Sum_probs=156.6

Q ss_pred             CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhc-CCCChhHHHHHHHHHHHhcCC-----CchhhHHHHhCC
Q 012897            9 DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLM-REDYPQLQFEAAWALTNIASG-----TSENTKVVIDHG   82 (454)
Q Consensus         9 d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~~~~~g   82 (454)
                      |++.|.+|-..|.++-...           .....+...|. .+.++.+|..|+..|.+....     .++.+..+ ...
T Consensus        26 ~~~~r~~Ae~~L~~~~~~p-----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-r~~   93 (1204)
T 3a6p_A           26 TQRYRLEALKFCEEFKEKC-----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-KNS   93 (1204)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-HHH
T ss_pred             ChHHHHHHHHHHHHHHhCc-----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-HHH
Confidence            4455555555555543321           23444444443 333389999999999987642     23333333 334


Q ss_pred             ChHHHHHhhCC---CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC---
Q 012897           83 AVPIFVKLLAS---PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK---  156 (454)
Q Consensus        83 ~i~~L~~lL~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~---  156 (454)
                      +++.+......   ....++...+.++..++...-..+    =.+.++.+++++..  ++.....++.+|..++.+.   
T Consensus        94 ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~----Wp~ll~~L~~~~~~--~~~~~e~~L~iL~~L~Eev~~~  167 (1204)
T 3a6p_A           94 VMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH----WPDMLIELDTLSKQ--GETQTELVMFILLRLAEDVVTF  167 (1204)
T ss_dssp             HHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT----CTTHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc----chHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHccc
Confidence            45554443221   458888888888888873211000    01346677777633  3455677788888876542   


Q ss_pred             CCCChhh-----------hhchHHHHHHhhcC-------------------CChhHHHHHHHHHHHhccCChHHHHHHHH
Q 012897          157 PQPPFDQ-----------VRPALPALAQLVHS-------------------NDEEVLTDACWALSYLSDGTNDKIQAVIE  206 (454)
Q Consensus       157 ~~~~~~~-----------~~~~l~~l~~ll~~-------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  206 (454)
                      .......           ...+++.+..++.+                   .+..++..++.++.+....-+.  ..+.+
T Consensus       168 ~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~~  245 (1204)
T 3a6p_A          168 QTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHITA  245 (1204)
T ss_dssp             CCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHHT
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHHh
Confidence            1111110           11344444444432                   1244677778888776654332  22333


Q ss_pred             hC--cHHHHHHhcCCCCCcchhhHHHHHhHhhccCc--cchhhhhc---cCChHHHHHhhc-------CCcchhHHHHHH
Q 012897          207 AG--VCPRLVELLGHPSPSVLIPALRTVGNIVTGDD--FQTQCIIT---YGALPYLLGLLT-------HSHKKSIKKEAC  272 (454)
Q Consensus       207 ~~--~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~---~~~l~~L~~~L~-------~~~~~~v~~~a~  272 (454)
                      ..  +++.+..++.  +++++..|+.||..++....  .....++.   ...+..++..+.       +..+.++.+..+
T Consensus       246 ~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~  323 (1204)
T 3a6p_A          246 ENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLC  323 (1204)
T ss_dssp             TTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHH
Confidence            32  6777776665  56799999999999997442  22122221   111234444432       111445666777


Q ss_pred             HHHHHHhcCCHHHHHHHHh-----------CCChHHHHHHhhhcchhhHHHHHHHHHHhcCC
Q 012897          273 WTISNITAGNRDQIQAVID-----------AGLVGPLVNLLQNAEFDIKKEAAWAISNATSG  323 (454)
Q Consensus       273 ~~L~nl~~~~~~~~~~l~~-----------~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  323 (454)
                      ..+..+..   . ...++.           .++++.++.+..+++..+...++.....+...
T Consensus       324 ~ll~~lg~---~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          324 QVLCALGN---Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             HHHHHHHH---H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHH---H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence            77776652   1 112221           13577777777777777777777766656554

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=94.95  E-value=1.1  Score=39.47  Aligned_cols=159  Identities=11%  Similarity=0.041  Sum_probs=96.1

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChH----HHHHhhCC-CCHHHHHHHHHHHHHhhCCChh
Q 012897           41 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVP----IFVKLLAS-PSDDVREQAVWALGNVAGDSPR  115 (454)
Q Consensus        41 l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~----~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~  115 (454)
                      +..+.++++-+  .+.+--++..++-++. .+.....+.+.+.-.    .+...+.+ ..+.-+-.++++++|+..... 
T Consensus       105 l~~l~kil~WP--~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~-  180 (304)
T 3ebb_A          105 LQILWKAINCP--EDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA-  180 (304)
T ss_dssp             HHHHHHHHTSC--TTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-
T ss_pred             HHHHHHHHcCC--HHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-
Confidence            45666666333  3455666666666665 565555555433223    33344443 456678889999999975543 


Q ss_pred             hHHHHHhcCChHHHHHHhc---hhhhhhHHHHHHHHHHhhcCCC-CCCChhhhhchHHHHHHhhc-CCChhHHHHHHHHH
Q 012897          116 CRDLVLSQGALIPLLAQLN---ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVH-SNDEEVLTDACWAL  190 (454)
Q Consensus       116 ~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~l~~ll~-~~~~~v~~~a~~~L  190 (454)
                      .+..+..  ....++..+.   .+.+..++..+..++.|++... ..........++..+..+++ ..+.+....++.+|
T Consensus       181 g~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvAL  258 (304)
T 3ebb_A          181 GQKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVAL  258 (304)
T ss_dssp             HHHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             hHHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            5555543  2344444432   3446788888888888887653 11222333445556666664 35889999999999


Q ss_pred             HHhccCChHHHHHHHH
Q 012897          191 SYLSDGTNDKIQAVIE  206 (454)
Q Consensus       191 ~~l~~~~~~~~~~~~~  206 (454)
                      +++....... ..+.+
T Consensus       259 GtL~~~~~~~-~~lak  273 (304)
T 3ebb_A          259 GTLISDDSNA-VQLAK  273 (304)
T ss_dssp             HHHHTTCHHH-HHHHH
T ss_pred             HHHHhCChhH-HHHHH
Confidence            9999775543 33443

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=94.37  E-value=2.1  Score=36.41  Aligned_cols=88  Identities=11%  Similarity=0.105  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHh
Q 012897           11 SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL   90 (454)
Q Consensus        11 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l   90 (454)
                      +.+...++....++....+....     .+++.++.+..+++ .++|...+..+...+...++...     ..++.|..+
T Consensus        30 ~~kl~~L~qa~el~~~~dp~ll~-----~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~L   98 (257)
T 3gs3_A           30 STKCELLAKVQETVLGSCAELAE-----EFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLP-----HVINVVSML   98 (257)
T ss_dssp             HHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHhHHH-----HHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence            57777777777766553222222     24666777666655 78888888888777753333222     246677777


Q ss_pred             hCCCCHHHHHHHHHHHHHh
Q 012897           91 LASPSDDVREQAVWALGNV  109 (454)
Q Consensus        91 L~~~~~~v~~~a~~~L~~l  109 (454)
                      +.++++.+...++.+..++
T Consensus        99 l~d~d~~V~K~~I~~~~~i  117 (257)
T 3gs3_A           99 LRDNSAQVIKRVIQACGSI  117 (257)
T ss_dssp             TTCSCHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHH
Confidence            7777777777777766665

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=94.27  E-value=0.12  Score=45.52  Aligned_cols=111  Identities=11%  Similarity=0.051  Sum_probs=71.5

Q ss_pred             HHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC--CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 012897           44 FVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH--GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVL  121 (454)
Q Consensus        44 L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  121 (454)
                      +...+.....+..+..++++++|+.. ++..+..+...  .+++.+...+.+++..++..+..++.|++......+..-.
T Consensus       152 l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~  230 (304)
T 3ebb_A          152 LINLLNPKGKPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG  230 (304)
T ss_dssp             HHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH
T ss_pred             HHHhcCCCCChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH
Confidence            33444444347789999999999998 66677766643  3444555555567899999999999999732110000000


Q ss_pred             hcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCC
Q 012897          122 SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  155 (454)
Q Consensus       122 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  155 (454)
                      ....+..+..++....+.+....++.+|++|...
T Consensus       231 ~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~  264 (304)
T 3ebb_A          231 KAQCLSLISTILEVVQDLEATFRLLVALGTLISD  264 (304)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence            0112444455554556788888999999999865

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=93.66  E-value=2  Score=39.28  Aligned_cols=140  Identities=12%  Similarity=0.134  Sum_probs=90.5

Q ss_pred             HHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcC----CC------ChhHHHHHHHHHHHhcCCCchhhHHHH-hCCCh
Q 012897           16 ATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR----ED------YPQLQFEAAWALTNIASGTSENTKVVI-DHGAV   84 (454)
Q Consensus        16 a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~----~~------~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i   84 (454)
                      .+..|...+...+...++.+. .+++..|+..|..    ..      +...+..++.||..+.. +......++ ..+++
T Consensus        25 ~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i  102 (386)
T 2bnx_A           25 CLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGI  102 (386)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHH
T ss_pred             HHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHH
Confidence            455555555554344566665 4567777776642    11      25778899999999998 444555544 45789


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hh-HHHHH----------hcCChHHHHHHhchhhhhhHHHHHHHHHHhh
Q 012897           85 PIFVKLLASPSDDVREQAVWALGNVAGDSP-RC-RDLVL----------SQGALIPLLAQLNERAKLSMLRNATWTLSNF  152 (454)
Q Consensus        85 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~-~~~~~----------~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l  152 (454)
                      ..+...|.++++.++..++..|..+|.... .. ...++          +..-+..++..+..+.+.+.+..++..+-.+
T Consensus       103 ~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~l  182 (386)
T 2bnx_A          103 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL  182 (386)
T ss_dssp             HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            999999999999999999999999986543 21 22221          2234555666665455566666666666666


Q ss_pred             cCCCC
Q 012897          153 CRGKP  157 (454)
Q Consensus       153 ~~~~~  157 (454)
                      ....+
T Consensus       183 v~~~~  187 (386)
T 2bnx_A          183 ITPAE  187 (386)
T ss_dssp             HTTCS
T ss_pred             HCCCC
Confidence            65543

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=93.23  E-value=1.8  Score=45.55  Aligned_cols=167  Identities=16%  Similarity=0.171  Sum_probs=109.0

Q ss_pred             ChHHHHHhhCC----CCHHHHHHHHHHHHHhh----CCChhhHHHHHhcCChHHHHHHhc---hhhhhhHHHHHHHHHHh
Q 012897           83 AVPIFVKLLAS----PSDDVREQAVWALGNVA----GDSPRCRDLVLSQGALIPLLAQLN---ERAKLSMLRNATWTLSN  151 (454)
Q Consensus        83 ~i~~L~~lL~~----~~~~v~~~a~~~L~~l~----~~~~~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~  151 (454)
                      .+..+..++.+    .++.++..++.+++.+.    ...+.+..     ..++.+.+.+.   ...+.+-+..++.+|+|
T Consensus       392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-----~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN  466 (1056)
T 1lsh_A          392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGN  466 (1056)
T ss_dssp             HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-----HHHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Confidence            45556666665    46778888887777665    22221111     12344444432   33456778889999999


Q ss_pred             hcCCCCCCChhhhhchHHHHHHhhcC-------CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc--CCCCC
Q 012897          152 FCRGKPQPPFDQVRPALPALAQLVHS-------NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL--GHPSP  222 (454)
Q Consensus       152 l~~~~~~~~~~~~~~~l~~l~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll--~~~~~  222 (454)
                      +-..          ..++.+.+++..       ....++..|+++|..++...+...+        +.++++.  ...++
T Consensus       467 ~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~  528 (1056)
T 1lsh_A          467 AGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKS  528 (1056)
T ss_dssp             HTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCH
T ss_pred             cCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCCh
Confidence            8753          467777777742       2356888999999999876554332        4466666  44677


Q ss_pred             cchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCC
Q 012897          223 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN  282 (454)
Q Consensus       223 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~  282 (454)
                      ++|..|+..|...   ++..       ..+..+...+..+.+.+|+......|.+++...
T Consensus       529 EvRiaA~~~Lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~  578 (1056)
T 1lsh_A          529 ELRIRSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS  578 (1056)
T ss_dssp             HHHHHHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHH---CcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence            8999998877432   2212       235677888877668899999999999998743

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=92.60  E-value=0.29  Score=38.50  Aligned_cols=72  Identities=11%  Similarity=0.122  Sum_probs=56.5

Q ss_pred             CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHH
Q 012897          337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH-DNNEIYEKAVKIL  415 (454)
Q Consensus       337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~-~~~~v~~~a~~~l  415 (454)
                      ++..|..-++++++.++..++..|..+++.+...            |...+.....++.+.++... .++.|++++..++
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~------------Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li  120 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKI------------FHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLM  120 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHH------------HHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH------------HHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence            4667777888899999999999999999876542            56566666667777776654 6789999999999


Q ss_pred             HHhcC
Q 012897          416 ETYWL  420 (454)
Q Consensus       416 ~~~~~  420 (454)
                      +.+-.
T Consensus       121 ~~W~~  125 (163)
T 1x5b_A          121 VEWSE  125 (163)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88765

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=92.58  E-value=0.23  Score=38.39  Aligned_cols=92  Identities=10%  Similarity=-0.041  Sum_probs=68.6

Q ss_pred             ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCC------CCHHHHHHHHHHHHHHHHhh
Q 012897          294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC------PDPRIVTVCLEGLENILKVG  367 (454)
Q Consensus       294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~------~~~~v~~~al~~L~~l~~~~  367 (454)
                      .+..|..-+.+.++.++..|+..|-.+..++...+...+.+..++..|+.++..      .++.|+..++..+.......
T Consensus        49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  128 (149)
T 3g2s_A           49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL  128 (149)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence            355677777888999999999999999998888877777777888889888863      56889999999998887654


Q ss_pred             hhhhhccCCcccccHHHHHHHHhcc
Q 012897          368 EAEKNMGTATADVNQYAQLVEEAEG  392 (454)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~l~~~g~  392 (454)
                      ....       ........++..|.
T Consensus       129 ~~~p-------~i~~~Y~~Lk~~Gi  146 (149)
T 3g2s_A          129 PEEV-------KIAEAYQMLKKQGI  146 (149)
T ss_dssp             TTCH-------HHHHHHHHHHHTTC
T ss_pred             CCCc-------hHHHHHHHHHHCcC
Confidence            3322       22334455555554

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=92.49  E-value=4.5  Score=34.41  Aligned_cols=141  Identities=14%  Similarity=0.170  Sum_probs=89.2

Q ss_pred             hHHHHHHHHHHHHhcC-CHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhc
Q 012897          266 SIKKEACWTISNITAG-NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDL  344 (454)
Q Consensus       266 ~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~  344 (454)
                      ..+.....-+..++.. ++...     .++++.++.+..+.+.++|+..+..+...+... .+...     .+++.|..+
T Consensus        30 ~~kl~~L~qa~el~~~~dp~ll-----~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k-~~l~~-----~~l~~L~~L   98 (257)
T 3gs3_A           30 STKCELLAKVQETVLGSCAELA-----EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK-VELLP-----HVINVVSML   98 (257)
T ss_dssp             HHHHHHHHHHHHHHTTTTGGGH-----HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-GGGHH-----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHhHH-----HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH-HHHHH-----HHHHHHHHH
Confidence            4566666666665543 33222     345667777766778999999999998887532 22222     367888888


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhhhhh-hccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 012897          345 FVCPDPRIVTVCLEGLENILKVGEAEK-NMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW  419 (454)
Q Consensus       345 l~~~~~~v~~~al~~L~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~  419 (454)
                      ++++++.+.+.++.+..++++..=..- +.++.....+.....+..  .-..+.++..+.|..++-.|.+.+++.-
T Consensus        99 l~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~--lK~~Il~~~~s~n~gvkl~~iKF~e~vI  172 (257)
T 3gs3_A           99 LRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSL--IKAQILDMIDNENDGIRTNAIKFLEGVV  172 (257)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHH--HHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH--HHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence            999999999999998888866422111 000000001223333322  2355666778899999999999999965

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=92.04  E-value=0.26  Score=37.67  Aligned_cols=72  Identities=13%  Similarity=0.172  Sum_probs=55.8

Q ss_pred             CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 012897          337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILE  416 (454)
Q Consensus       337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~  416 (454)
                      ++..|..-+.++++.++..++..|..+++.+...            |...+.....++.+..+....++.|++++..++.
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~------------f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~  110 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKI------------FHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMV  110 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH------------HHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHH------------HHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            5777777888899999999999999999876542            4545555556666667766788999999999998


Q ss_pred             HhcC
Q 012897          417 TYWL  420 (454)
Q Consensus       417 ~~~~  420 (454)
                      .+-.
T Consensus       111 ~W~~  114 (140)
T 3ldz_A          111 EWTD  114 (140)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=92.02  E-value=0.39  Score=37.07  Aligned_cols=72  Identities=14%  Similarity=0.142  Sum_probs=58.6

Q ss_pred             CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcC------CCHHHHHH
Q 012897          337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH------DNNEIYEK  410 (454)
Q Consensus       337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~------~~~~v~~~  410 (454)
                      ++..|..-++++++.++..++..|..+++.+...            |...+.....++.|.++...      .++.|+++
T Consensus        39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~------------fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~k  106 (148)
T 1mhq_A           39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEK------------FHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGR  106 (148)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH------------HHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH------------HHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHH
Confidence            4677777888999999999999999999876542            66777777788888887653      47899999


Q ss_pred             HHHHHHHhcC
Q 012897          411 AVKILETYWL  420 (454)
Q Consensus       411 a~~~l~~~~~  420 (454)
                      +..+++.+-.
T Consensus       107 il~li~~W~~  116 (148)
T 1mhq_A          107 VIEILFSWTV  116 (148)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=91.89  E-value=0.47  Score=37.66  Aligned_cols=72  Identities=15%  Similarity=0.197  Sum_probs=58.3

Q ss_pred             CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhc------CCCHHHHHH
Q 012897          337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS------HDNNEIYEK  410 (454)
Q Consensus       337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~------~~~~~v~~~  410 (454)
                      ++..|.+-++++++.++..++..|..+++.+...            |...+.....++.|.++..      ..+..|+++
T Consensus        51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~------------Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~k  118 (171)
T 1juq_A           51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR------------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTK  118 (171)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH------------HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence            4677778888999999999999999999986542            6667777777888888864      346899999


Q ss_pred             HHHHHHHhcC
Q 012897          411 AVKILETYWL  420 (454)
Q Consensus       411 a~~~l~~~~~  420 (454)
                      +..+++.+-.
T Consensus       119 il~li~~W~~  128 (171)
T 1juq_A          119 VIELLYSWTM  128 (171)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988664

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=91.86  E-value=0.28  Score=37.50  Aligned_cols=75  Identities=4%  Similarity=-0.023  Sum_probs=58.2

Q ss_pred             ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhh
Q 012897          294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGE  368 (454)
Q Consensus       294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~  368 (454)
                      ++..+..-+.++++.++..|+..|-.+..++.......+.+..++..|..+++..++.|+..++..+........
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~  117 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK  117 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC
Confidence            355566777788889999999999888888877766666566677777777777889999999998888765443

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=91.76  E-value=1.3  Score=40.26  Aligned_cols=120  Identities=16%  Similarity=0.139  Sum_probs=80.4

Q ss_pred             CCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhh-h
Q 012897          292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEA-E  370 (454)
Q Consensus       292 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~-~  370 (454)
                      .++++.++.+..+.+.++|+.++..|...+.. ..+...     .+++.|..++++.++.+.+.++.+..+++...=. .
T Consensus        62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~~el~~-----~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i  135 (386)
T 3o2t_A           62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-DIELLL-----KLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWM  135 (386)
T ss_dssp             GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            46889999988888999999999999888763 222222     2577888888889999999988888887643211 1


Q ss_pred             hhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 012897          371 KNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW  419 (454)
Q Consensus       371 ~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~  419 (454)
                      .+.++.....+.....+..  .-..+..+..+.|..++-.|.+.+++.-
T Consensus       136 ~~~~~~~~~~e~~W~~m~~--lK~~Il~~~ds~n~GVrl~aiKFle~VI  182 (386)
T 3o2t_A          136 VKSRVISELQEACWDMVSA--MAGDIILLLDSDNDGIRTHAIKFVEGLI  182 (386)
T ss_dssp             HHC-CCCHHHHHHHHHHHH--HHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred             hcCCCcchhHHHHHHHHHH--HHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence            1100000001123333322  2355666778899999999999999965

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=91.58  E-value=0.44  Score=36.80  Aligned_cols=72  Identities=15%  Similarity=0.197  Sum_probs=58.2

Q ss_pred             CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhc------CCCHHHHHH
Q 012897          337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS------HDNNEIYEK  410 (454)
Q Consensus       337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~------~~~~~v~~~  410 (454)
                      ++..|..-+.++++.++..++..|..+++.+...            |...+....+++.|.++..      ..++.|+++
T Consensus        49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~------------fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~k  116 (149)
T 3g2s_A           49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR------------FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNK  116 (149)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHH------------HHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHH------------HHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHH
Confidence            5677777888899999999999999999876543            6666777777788888764      367999999


Q ss_pred             HHHHHHHhcC
Q 012897          411 AVKILETYWL  420 (454)
Q Consensus       411 a~~~l~~~~~  420 (454)
                      +..++..+-.
T Consensus       117 il~li~~W~~  126 (149)
T 3g2s_A          117 ILELLYSWTV  126 (149)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=91.47  E-value=0.53  Score=36.34  Aligned_cols=73  Identities=8%  Similarity=-0.087  Sum_probs=60.0

Q ss_pred             ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCC------CCHHHHHHHHHHHHHHHHh
Q 012897          294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC------PDPRIVTVCLEGLENILKV  366 (454)
Q Consensus       294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~------~~~~v~~~al~~L~~l~~~  366 (454)
                      ++..+..-++++++.++..|+..|-.+..++...+...+.+..++..|+.++..      .++.|+..++..+......
T Consensus        39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~  117 (148)
T 1mhq_A           39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW  117 (148)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            355677777888999999999999999998888777777777889999988874      4678999998888887654

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A

Probab=90.90  E-value=0.65  Score=35.21  Aligned_cols=77  Identities=12%  Similarity=0.185  Sum_probs=54.9

Q ss_pred             CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHh-ccHHHHHHHhcCC--------CHHH
Q 012897          337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEA-EGLEKIENLQSHD--------NNEI  407 (454)
Q Consensus       337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~l~~l~~~~--------~~~v  407 (454)
                      +++.|..-|+.+++.++.++|.+|..+++.+...            |...+++. ..++.+.+....+        ...|
T Consensus        50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~------------f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~V  117 (140)
T 1vdy_A           50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE------------FRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAV  117 (140)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH------------HHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHH
T ss_pred             HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH------------HHHHHHHhHHHHHHHHhcCCCCCcccccchhHHH
Confidence            5788888999999999999999999999765432            55554433 2233333333222        2779


Q ss_pred             HHHHHHHHHHhcCcCCCc
Q 012897          408 YEKAVKILETYWLEEDDE  425 (454)
Q Consensus       408 ~~~a~~~l~~~~~~~~~~  425 (454)
                      +.+|..+++-+++.+...
T Consensus       118 R~~AkEl~~ll~d~~~~~  135 (140)
T 1vdy_A          118 RETAHETISAIFSEENGS  135 (140)
T ss_dssp             HHHHHHHHHHHTCCSSCC
T ss_pred             HHHHHHHHHHHhCcCCCC
Confidence            999999999999877654

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=90.46  E-value=8.4  Score=35.04  Aligned_cols=233  Identities=13%  Similarity=0.046  Sum_probs=106.6

Q ss_pred             chhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHh
Q 012897           72 SENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN  151 (454)
Q Consensus        72 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  151 (454)
                      +...+..++..++..|+.+++++++.=|...-.+|..+-+.-...|..+... +-..+.+.+.......-....+.+++.
T Consensus       119 ~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~-innif~~fiye~e~~~GIaeLLeilgs  197 (403)
T 3fga_B          119 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGS  197 (403)
T ss_dssp             HHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred             hhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHhcCcccCCCHHHHHHHHHH
Confidence            3334555666788899999999999999999998888765444444433221 122333333222211222234444444


Q ss_pred             hcCCCCC-CChhhhhchHHHHHHhhcCCChh-HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCCcchhh-
Q 012897          152 FCRGKPQ-PPFDQVRPALPALAQLVHSNDEE-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIP-  227 (454)
Q Consensus       152 l~~~~~~-~~~~~~~~~l~~l~~ll~~~~~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~-  227 (454)
                      +..+-.. .......-...+|+.+-....-. --.....|+......++.....++        ..+++. +.....+. 
T Consensus       198 IinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi--------~~LLk~WP~tns~Kev  269 (403)
T 3fga_B          198 IINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVV--------MALLKYWPKTHSPKEV  269 (403)
T ss_dssp             HHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHH--------HHHHHTCCSSCHHHHH
T ss_pred             HHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHH--------HHHHHhCCCCCcHHHH
Confidence            4444311 12222222333444444433221 112233333333333332222111        112211 11111111 


Q ss_pred             -HHHHHhHhhccCc-cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHH-----HHHhcCCHHHHHHHHhCCChHHHHH
Q 012897          228 -ALRTVGNIVTGDD-FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI-----SNITAGNRDQIQAVIDAGLVGPLVN  300 (454)
Q Consensus       228 -a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L-----~nl~~~~~~~~~~l~~~~~i~~L~~  300 (454)
                       -+.-+..+....+ ..... +...+...+..++.++ +.+|-+.|+...     .++...+..        .++|.+..
T Consensus       270 lFL~Ele~iLe~~~~~~f~~-i~~~lf~~la~ci~S~-hfqVAErAL~~wnNe~i~~li~~n~~--------~IlPii~p  339 (403)
T 3fga_B          270 MFLNELEEILDVIEPSEFVK-IMEPLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLISDNAA--------KILPIMFP  339 (403)
T ss_dssp             HHHHHHHHHHTTCCHHHHHH-HHHHHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHHHHTTHH--------HHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHH-HHHHHHHHHHHHHCCC-CHHHHHHHHHHhccHHHHHHHHHhHH--------HHHHHHHH
Confidence             1222333332211 11111 1123556677777788 877877776543     222222222        23444444


Q ss_pred             Hh----hhc-chhhHHHHHHHHHHhcCC
Q 012897          301 LL----QNA-EFDIKKEAAWAISNATSG  323 (454)
Q Consensus       301 ll----~~~-~~~v~~~a~~aL~~l~~~  323 (454)
                      .+    +.. +..++..+..++.-+...
T Consensus       340 ~L~~~~~~HWn~~v~~l~~~vlk~l~e~  367 (403)
T 3fga_B          340 SLYRNSKTHWNKTIHGLIYNALKLFMEM  367 (403)
T ss_dssp             HHHHTTSCCSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence            33    333 677888888777776554

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=90.30  E-value=1.1  Score=38.66  Aligned_cols=134  Identities=13%  Similarity=0.113  Sum_probs=88.7

Q ss_pred             chhhHHHHHhHhhccCccchhhhh-ccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHh--CCChHHHHH
Q 012897          224 VLIPALRTVGNIVTGDDFQTQCII-TYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID--AGLVGPLVN  300 (454)
Q Consensus       224 v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~~i~~L~~  300 (454)
                      ....|+..|.-++..-....+.+- +...+..|+ +.... .+.+++.|+.+++.+.+.+|..+..+.+  ..++..++.
T Consensus        44 ~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~  121 (315)
T 3qml_C           44 RLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMA  121 (315)
T ss_dssp             HHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHH
Confidence            456677777777754333333222 223344444 22344 6679999999999999999999887774  456666666


Q ss_pred             Hhhh-------cchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCC--CHHHHHHHHHHHHHHHH
Q 012897          301 LLQN-------AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP--DPRIVTVCLEGLENILK  365 (454)
Q Consensus       301 ll~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~--~~~v~~~al~~L~~l~~  365 (454)
                      -+..       ....+++.-+.+|.-|+.... ..     ....+..|.+++...  ++.++..++..+..++.
T Consensus       122 ~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~-~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~  189 (315)
T 3qml_C          122 ALSNLNDSNHRSSNILIKRYLSILNELPVTSE-DL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK  189 (315)
T ss_dssp             HHHHHHCC--CCCHHHHHHHHHHHHHSCCCST-TC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccchhHHHHHHHHHHHHHHhcChH-hh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence            5543       233566777788888877531 11     134667777777766  88999999999999986

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=89.95  E-value=7.8  Score=35.10  Aligned_cols=87  Identities=10%  Similarity=0.140  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhh
Q 012897           12 LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL   91 (454)
Q Consensus        12 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL   91 (454)
                      .+...++.+.+++... .+.    .-.++++.++.+-.+++ .++|.-.+..|...+....+...     .+++.|..+|
T Consensus        41 ~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~LL  109 (386)
T 3o2t_A           41 SKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLL-----KLIANLNMLL  109 (386)
T ss_dssp             HHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence            4666666666665442 111    11346777777777766 77777777777776653333322     2355666666


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q 012897           92 ASPSDDVREQAVWALGNV  109 (454)
Q Consensus        92 ~~~~~~v~~~a~~~L~~l  109 (454)
                      .++++.+...++.+.+++
T Consensus       110 ~d~d~~V~K~~I~~~tsl  127 (386)
T 3o2t_A          110 RDENVNVVKKAILTMTQL  127 (386)
T ss_dssp             TCSSHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHH
Confidence            666777777776666665

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=89.34  E-value=0.63  Score=36.93  Aligned_cols=73  Identities=11%  Similarity=-0.031  Sum_probs=58.0

Q ss_pred             ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCC------CCHHHHHHHHHHHHHHHHh
Q 012897          294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC------PDPRIVTVCLEGLENILKV  366 (454)
Q Consensus       294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~------~~~~v~~~al~~L~~l~~~  366 (454)
                      ++..|..-+.++++.++..|+..|-.+..++...+...+.+..++..|+.++..      .++.|+..++..+......
T Consensus        51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~  129 (171)
T 1juq_A           51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA  129 (171)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            345677778888999999999999999998777766666777788888888863      4578999998888887643

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=89.19  E-value=0.64  Score=36.57  Aligned_cols=73  Identities=3%  Similarity=-0.044  Sum_probs=56.8

Q ss_pred             ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCC-CCHHHHHHHHHHHHHHHHh
Q 012897          294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC-PDPRIVTVCLEGLENILKV  366 (454)
Q Consensus       294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~al~~L~~l~~~  366 (454)
                      ++..|..-+.++++.++..|+..|-.+..++...+...+.+..++..|+.++.. .++.|+..++..+......
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~  126 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE  126 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence            345577777888999999999999999998877777666666777777777764 5678999988877776543

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=87.32  E-value=14  Score=34.10  Aligned_cols=233  Identities=14%  Similarity=0.059  Sum_probs=113.1

Q ss_pred             chhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHh
Q 012897           72 SENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN  151 (454)
Q Consensus        72 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  151 (454)
                      +...+..++..++..|+.+++++++.-|...-.+|..+-..-...|..+... +-..+.+.+.......-....+.+++.
T Consensus       152 ~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgS  230 (449)
T 2npp_B          152 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGS  230 (449)
T ss_dssp             STTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHH
T ss_pred             hhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHH
Confidence            3445666677889999999999999999999999988764433344433321 123344444232223334455666666


Q ss_pred             hcCCCCCC-ChhhhhchHHHHHHhhcCCChhH-HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCCcchhh-
Q 012897          152 FCRGKPQP-PFDQVRPALPALAQLVHSNDEEV-LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIP-  227 (454)
Q Consensus       152 l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~v-~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~-  227 (454)
                      +..+-..+ ......-....|+.+.....-.. -.....|+......++.....++     .   .+++. +....... 
T Consensus       231 IinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi-----~---~LLk~WP~tns~Kev  302 (449)
T 2npp_B          231 IINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVV-----M---ALLKYWPKTHSPKEV  302 (449)
T ss_dssp             HHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHHH-----H---HHHHTCCSSCHHHHH
T ss_pred             HHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHHH-----H---HHHHhCCCCCchHHH
Confidence            66554222 22322333444555554433221 12233344333333332222111     1   22221 11111222 


Q ss_pred             -HHHHHhHhhccCc-cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHH-----HHhcCCHHHHHHHHhCCChHHHHH
Q 012897          228 -ALRTVGNIVTGDD-FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS-----NITAGNRDQIQAVIDAGLVGPLVN  300 (454)
Q Consensus       228 -a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~-----nl~~~~~~~~~~l~~~~~i~~L~~  300 (454)
                       -+.-|..+....+ .....+ ...+...+..++.++ +.+|-+.|+....     ++...+..        .++|.+..
T Consensus       303 lFL~eleeile~~~~~ef~~i-~~~lF~~la~ci~S~-hfqVAErAL~~w~N~~i~~li~~n~~--------~IlPii~p  372 (449)
T 2npp_B          303 MFLNELEEILDVIEPSEFVKI-MEPLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLISDNAA--------KILPIMFP  372 (449)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHH-HHHHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHHHHTTHH--------HHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHHcCC-CHHHHHHHHHHHCCHHHHHHHHhchh--------hhHHhhHH
Confidence             2222333332211 111111 123556677777887 8778777764432     22222211        23455555


Q ss_pred             Hhhh----c-chhhHHHHHHHHHHhcCC
Q 012897          301 LLQN----A-EFDIKKEAAWAISNATSG  323 (454)
Q Consensus       301 ll~~----~-~~~v~~~a~~aL~~l~~~  323 (454)
                      .+..    . +..++..+..++.-+...
T Consensus       373 ~L~~~s~~HWn~~V~~la~~vlk~l~e~  400 (449)
T 2npp_B          373 SLYRNSKTHWNKTIHGLIYNALKLFMEM  400 (449)
T ss_dssp             HHTSCTTCCSSTTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            4422    2 566777777777665554

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=87.27  E-value=2.8  Score=36.31  Aligned_cols=149  Identities=11%  Similarity=0.097  Sum_probs=93.5

Q ss_pred             HHHHHHhhcCC------ChhHHHHHHHHHHHhccCChHHHHHHH-HhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897          168 LPALAQLVHSN------DEEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD  240 (454)
Q Consensus       168 l~~l~~ll~~~------~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  240 (454)
                      +..+..++.++      +......++..|..++.......+..- +..++..|+ +.....+.+++.|.++|+...+++|
T Consensus        24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP  102 (315)
T 3qml_C           24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNP  102 (315)
T ss_dssp             HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCH
Confidence            34445555554      444577788888888765443333222 334444444 3344556799999999999999999


Q ss_pred             cchhhhhcc--CChHHHHHhhcC----C--cchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc--chhhH
Q 012897          241 FQTQCIITY--GALPYLLGLLTH----S--HKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDIK  310 (454)
Q Consensus       241 ~~~~~~~~~--~~l~~L~~~L~~----~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~  310 (454)
                      .....+.+.  .++..+..-|..    .  ....+.+.-+.+|.-|...+..    + ....+..|.+++...  ++.++
T Consensus       103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~~~d~~~k  177 (315)
T 3qml_C          103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERNNKDKQLQ  177 (315)
T ss_dssp             HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccCCCCHHHH
Confidence            877766542  344444433322    1  1335667777777777765421    1 134667888888777  89999


Q ss_pred             HHHHHHHHHhcC
Q 012897          311 KEAAWAISNATS  322 (454)
Q Consensus       311 ~~a~~aL~~l~~  322 (454)
                      ..++..+..+..
T Consensus       178 ~Kvl~li~d~f~  189 (315)
T 3qml_C          178 IKVLELISKILK  189 (315)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcc
Confidence            999999888763

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=84.45  E-value=2.1  Score=35.71  Aligned_cols=72  Identities=13%  Similarity=0.228  Sum_probs=54.5

Q ss_pred             CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHh-cCCCHHHHHHHHHHH
Q 012897          337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ-SHDNNEIYEKAVKIL  415 (454)
Q Consensus       337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~-~~~~~~v~~~a~~~l  415 (454)
                      ++..|..-+.++++.++..++..|..+++.+...            |...+.....++.|..+. ...+++|++++..++
T Consensus        46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~------------f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li  113 (226)
T 3zyq_A           46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQT------------VHDEVANKQTMEELKDLLKRQVEVNVRNKILYLI  113 (226)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHH------------HHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchH------------HHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence            4677778888999999999999999999876642            455555555556666554 456789999999999


Q ss_pred             HHhcC
Q 012897          416 ETYWL  420 (454)
Q Consensus       416 ~~~~~  420 (454)
                      ..+-.
T Consensus       114 ~~W~~  118 (226)
T 3zyq_A          114 QAWAH  118 (226)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87654

>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2

Probab=84.35  E-value=2.4  Score=33.03  Aligned_cols=72  Identities=14%  Similarity=0.166  Sum_probs=53.7

Q ss_pred             CcHHHhhccC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHH-HHHHhc---CCCHHHHHHH
Q 012897          337 CIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEK-IENLQS---HDNNEIYEKA  411 (454)
Q Consensus       337 ~i~~L~~~l~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-l~~l~~---~~~~~v~~~a  411 (454)
                      ++..|..-++ .+++.++..|+..|..+++.+...            |...+.....++. |.++..   .++..|++++
T Consensus        54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~------------fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~ki  121 (157)
T 1elk_A           54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHR------------FHVLVASQDFVESVLVRTILPKNNPPTIVHDKV  121 (157)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHH------------HHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHH
T ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHH------------HHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHH
Confidence            4666777776 588999999999999999876432            5666666666776 566552   3457899999


Q ss_pred             HHHHHHhcC
Q 012897          412 VKILETYWL  420 (454)
Q Consensus       412 ~~~l~~~~~  420 (454)
                      ..+++.+-.
T Consensus       122 l~li~~W~~  130 (157)
T 1elk_A          122 LNLIQSWAD  130 (157)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998765

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1

Probab=84.27  E-value=2.3  Score=35.36  Aligned_cols=72  Identities=19%  Similarity=0.236  Sum_probs=54.0

Q ss_pred             CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHh-cCCCHHHHHHHHHHH
Q 012897          337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ-SHDNNEIYEKAVKIL  415 (454)
Q Consensus       337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~-~~~~~~v~~~a~~~l  415 (454)
                      ++..|..-+.++++.++..++..|..+++.+...            |...+.....++.|..+. ...+.+|++++..++
T Consensus        43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~------------f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li  110 (220)
T 1dvp_A           43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP------------VHEEVFTKENCEMFSSFLESTPHENVRQKMLELV  110 (220)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHH------------HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            4666777788899999999999999999886542            445555555666666654 356789999999998


Q ss_pred             HHhcC
Q 012897          416 ETYWL  420 (454)
Q Consensus       416 ~~~~~  420 (454)
                      +.+-.
T Consensus       111 ~~W~~  115 (220)
T 1dvp_A          111 QTWAY  115 (220)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87664

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=83.04  E-value=7  Score=40.63  Aligned_cols=186  Identities=14%  Similarity=0.090  Sum_probs=111.8

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhch---hhhhhHHHHHHHHHH--hhcCCCC
Q 012897           83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE---RAKLSMLRNATWTLS--NFCRGKP  157 (454)
Q Consensus        83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~---~~~~~~~~~a~~~L~--~l~~~~~  157 (454)
                      ++.-|+++--+...++|..|-.+|......-+..+..+     ++.+++.|..   +.+.+-.+-|+++|.  .+... -
T Consensus       134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~i-----ip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~-~  207 (997)
T 1vsy_5          134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVV-----INKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK-L  207 (997)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHH-----HHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH-G
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHH-----HHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH-H
Confidence            45666666677889999999999999886655555554     7788888855   445556666666554  11110 1


Q ss_pred             CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC------------------------hHHHHHH---------
Q 012897          158 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT------------------------NDKIQAV---------  204 (454)
Q Consensus       158 ~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~------------------------~~~~~~~---------  204 (454)
                      .........+++.++.....+.+.++..+-.+...+....                        .......         
T Consensus       208 ~~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~  287 (997)
T 1vsy_5          208 MTDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKRE  287 (997)
T ss_dssp             GGCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHH
T ss_pred             hcChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHH
Confidence            2344555677788888877777777655544433332200                        0000100         


Q ss_pred             -HH---hCcHHHHHHhc-CCCC--CcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHH
Q 012897          205 -IE---AGVCPRLVELL-GHPS--PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN  277 (454)
Q Consensus       205 -~~---~~~i~~L~~ll-~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~n  277 (454)
                       ..   .++...++... ....  +.....++..|.++....+    .......+..+++.+.++ ++.+|..|..++..
T Consensus       288 ~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d----~~~~~~~v~~~~~~l~~d-hp~~R~~a~~~l~~  362 (997)
T 1vsy_5          288 YYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLE----SKPDKRAVFSIISQISTK-HPEIIHLVVKSLLS  362 (997)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSS----CCCCHHHHHHHHGGGGGC-CHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHhhcCC-CHHHHHHHHHHHHH
Confidence             00   12333344554 2344  6666667777555553222    233445678899999998 99999999988866


Q ss_pred             Hh
Q 012897          278 IT  279 (454)
Q Consensus       278 l~  279 (454)
                      +.
T Consensus       363 il  364 (997)
T 1vsy_5          363 TC  364 (997)
T ss_dssp             HH
T ss_pred             HH
Confidence            55

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=82.63  E-value=8.5  Score=39.99  Aligned_cols=217  Identities=12%  Similarity=0.095  Sum_probs=117.9

Q ss_pred             hHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhc----CCChhHHHHHHHHHH-----HhccC
Q 012897          126 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH----SNDEEVLTDACWALS-----YLSDG  196 (454)
Q Consensus       126 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~----~~~~~v~~~a~~~L~-----~l~~~  196 (454)
                      +..|+++. .+.-.+++..|-.+|......-+...    .-++|.+++.|+    ..+.+-..-|+.+|.     ..+..
T Consensus       135 l~dL~~Ls-~S~Y~~VR~~AQ~~L~~~~~~~~gs~----~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~  209 (997)
T 1vsy_5          135 LVDIIQLA-TSLYPDIYKPAQGTLVHCMKQLVGSY----GVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMT  209 (997)
T ss_dssp             HHHHHHHH-TSSCHHHHHHHHHHHHHHHTTBTTHH----HHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGG
T ss_pred             HHHHHHHh-cCchHHHHHHHHHHHHHHHHhcccHH----HHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhc
Confidence            45566655 56678899999999999886543333    334555555553    456666666776654     12222


Q ss_pred             ChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc-cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHH
Q 012897          197 TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD-FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI  275 (454)
Q Consensus       197 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L  275 (454)
                      +....     ..+++.++.....+++.++.-+-.+...+..... ...-..++...+    ..+..+ +..+- .+....
T Consensus       210 d~~~~-----~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~----~~i~~~-d~~i~-~~~~~~  278 (997)
T 1vsy_5          210 DYKDI-----GRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAF----LPLAPP-DGTIN-LQVEAV  278 (997)
T ss_dssp             CHHHH-----HHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGT----GGGCCS-CSSTT-SHHHHH
T ss_pred             ChHHH-----HHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHH----hccCCC-cHHHH-HHHHHH
Confidence            22221     2456677777777778887776666555543221 110011221121    223322 22211 111111


Q ss_pred             HHHhcCCHHHHHHHHh--CCChHHHHHHhhh-cc--hhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCH
Q 012897          276 SNITAGNRDQIQAVID--AGLVGPLVNLLQN-AE--FDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDP  350 (454)
Q Consensus       276 ~nl~~~~~~~~~~l~~--~~~i~~L~~ll~~-~~--~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~  350 (454)
                      ....   ...+....+  .++...+++..+. .+  +.....++..+.++....+..     ....++..+++.+.+++|
T Consensus       279 ~~~~---~~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~-----~~~~~v~~~~~~l~~dhp  350 (997)
T 1vsy_5          279 KLAK---KKKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESK-----PDKRAVFSIISQISTKHP  350 (997)
T ss_dssp             HHHT---THHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCC-----CCHHHHHHHHGGGGGCCH
T ss_pred             HHHH---HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCC-----CCHHHHHHHHHhhcCCCH
Confidence            1111   111111111  2345556666633 36  778888888867776432211     111246778888999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 012897          351 RIVTVCLEGLENILKV  366 (454)
Q Consensus       351 ~v~~~al~~L~~l~~~  366 (454)
                      .++..++.++..++..
T Consensus       351 ~~R~~a~~~l~~il~~  366 (997)
T 1vsy_5          351 EIIHLVVKSLLSTCNK  366 (997)
T ss_dssp             HHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999888764

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=80.97  E-value=2.2  Score=35.61  Aligned_cols=74  Identities=8%  Similarity=0.005  Sum_probs=56.3

Q ss_pred             ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccC-CCCHHHHHHHHHHHHHHHHhh
Q 012897          294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV-CPDPRIVTVCLEGLENILKVG  367 (454)
Q Consensus       294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~-~~~~~v~~~al~~L~~l~~~~  367 (454)
                      ++..|..-+.+.++.++..|+..|-.+..+........+.+..+++.|..+++ ..++.|+..++..+.......
T Consensus        46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f  120 (226)
T 3zyq_A           46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF  120 (226)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence            35556777778899999999999999988877766666666667777777665 356789999998888886543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	454
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	1e-116
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-98
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	3e-21
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-09
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-47
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	3e-17
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	9e-16
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	4e-24
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-22
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-21
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-19
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-17
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-17
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-12
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	7e-22
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	2e-12
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	4e-09
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	6e-12
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	1e-11
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-11
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	7e-09
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	7e-06
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	0.003
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	3e-07
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	3e-06
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	1e-05
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	2e-04
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	9e-06
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	3e-05
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.001
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.002
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	4e-04
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	0.002
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	9e-04
d1te4a_	111	a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium	0.002

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  349 bits (895), Expect = e-116
 Identities = 250/427 (58%), Positives = 307/427 (71%), Gaps = 7/427 (1%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR VEF+       LQ EA
Sbjct: 81  MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEA 140

Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTS  TKVV+D  AVP+F++LL + S +V+EQA+WALGNVAGDS   RD V
Sbjct: 141 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV 200

Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSND 179
           L   A+ P+L  L    K S++R ATWTLSN CRGK PQP +  V  ALP LA+L++S D
Sbjct: 201 LQCNAMEPIL-GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMD 259

Query: 180 EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD 239
            E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGNIVTG+
Sbjct: 260 TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN 319

Query: 240 DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLV 299
           D QTQ +I  G LP L  LL+   K++IKKEACWTISNITAGN +QIQAVIDA L+ PLV
Sbjct: 320 DLQTQVVINAGVLPALRLLLSS-PKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLV 378

Query: 300 NLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRIVTVCL 357
            LL+ AE+  KKEA WAISNA+SGG    + I+YLV +GCIKPLCDL    D RI+ V L
Sbjct: 379 KLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTL 438

Query: 358 EGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILET 417
           + LENILK+GEA+K       ++N+ A  +E+A G+EKI N Q ++N++IYEKA KI+ET
Sbjct: 439 DALENILKMGEADKE--ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIET 496

Query: 418 YWLEEDD 424
           Y+ EE+D
Sbjct: 497 YFGEEED 503

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  299 bits (766), Expect = 2e-98
 Identities = 214/424 (50%), Positives = 285/424 (67%), Gaps = 13/424 (3%)

Query: 1   MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +QFE+
Sbjct: 18  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 77

Query: 61  AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
           AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    RDLV
Sbjct: 78  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137

Query: 121 LSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGKPQ-PPFDQVRPALPALAQLV 175
           +  GA+ PLLA L            LRN TWTLSN CR K   PP D V   LP L +L+
Sbjct: 138 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 197

Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
           H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR +GNI
Sbjct: 198 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 257

Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
           VTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 258 VTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 316

Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
             LV +L  A+F  +KEAAWAI+N TSGGT EQI YLV  G I+PL +L    D +I+ V
Sbjct: 317 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 376

Query: 356 CLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKIL 415
            L+ + NI +  E          +  + + ++EE  GL+KIE LQ H+N  +Y+ ++ ++
Sbjct: 377 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 429

Query: 416 ETYW 419
           E Y+
Sbjct: 430 EKYF 433

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.3 bits (230), Expect = 3e-21
 Identities = 46/195 (23%), Positives = 73/195 (37%), Gaps = 9/195 (4%)

Query: 163 QVRPALPALAQLVHSNDEEVLTDACWAL-SYLSDGTNDKIQAVIEAGVCPRLVELLGH-P 220
            V  ++  + + ++SN+ E    A  A    LS      I  +I AG+ P+ V  LG   
Sbjct: 10  TVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 69

Query: 221 SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 280
              +   +   + NI +G   QT+ ++  GA+P     L  S    I ++A W + NI  
Sbjct: 70  CSPIQFESAWALTNIASGTSEQTKAVVDGGAIP-AFISLLASPHAHISEQAVWALGNIAG 128

Query: 281 GNRDQIQAVIDAGLVGPLVNLLQNAEFD-----IKKEAAWAISNATSGGTHEQIKYLVRE 335
                   VI  G + PL+ LL   +         +   W +SN               E
Sbjct: 129 DGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAP-PLDAVE 187

Query: 336 GCIKPLCDLFVCPDP 350
             +  L  L    DP
Sbjct: 188 QILPTLVRLLHHNDP 202

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.7 bits (135), Expect = 2e-09
 Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 4/142 (2%)

Query: 248 TYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ-IQAVIDAGLVGPLVNLLQNAE 306
              ++  ++  + +S+    + +A      + +  +   I  +I AGL+   V+ L   +
Sbjct: 11  VNWSVEDIVKGI-NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 69

Query: 307 F-DIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILK 365
              I+ E+AWA++N  S GT EQ K +V  G I     L   P   I    +  L NI  
Sbjct: 70  CSPIQFESAWALTNIAS-GTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG 128

Query: 366 VGEAEKNMGTATADVNQYAQLV 387
            G A +++      ++    L+
Sbjct: 129 DGSAFRDLVIKHGAIDPLLALL 150

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  167 bits (423), Expect = 1e-47
 Identities = 62/451 (13%), Positives = 125/451 (27%), Gaps = 70/451 (15%)

Query: 41  VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 100
           +P+ V++L  +D  + Q   A+ + +         + V   G +   V LL SP+ +V++
Sbjct: 4   IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 101 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 160
            A  AL N+   S   +     Q  +   ++ L       + +  T  L N         
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 161 FDQVRPALPALAQLV---------------HSNDEEVLTDACWALSYLSDGTNDKIQAVI 205
                       +++                  D EV  +A   L  LS     +     
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 206 EAGVCPRLVELLGHPSPSVLIP--------------ALRTVGNIVTGDDFQTQCIITYGA 251
            +G+   L+  + +   +                  + R    + T              
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 252 LPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKK 311
                G  ++   K +              N      +  +  +   +NL+  ++ D   
Sbjct: 243 EKSSTGCFSNKSDK-MMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301

Query: 312 EAAWAISNATSGGTHEQIKY-----LVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV 366
           EA        +               ++E  +  +  L    +  +V      L N+ + 
Sbjct: 302 EACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361

Query: 367 GEAEKNMGTA---------------------------------TADVNQYAQLVEEAEGL 393
               + MG                                    A   Q A+    +  L
Sbjct: 362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSML 421

Query: 394 EKIENL-QSHDNNEIYEKAVKILETYWLEED 423
             I NL +S  + +  E A  +L   W  ++
Sbjct: 422 NNIINLCRSSASPKAAEAARLLLSDMWSSKE 452

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.4 bits (199), Expect = 3e-17
 Identities = 43/308 (13%), Positives = 92/308 (29%), Gaps = 28/308 (9%)

Query: 38  SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDD 97
           SG              P++ F A   L N++S  +    +    G +   +  + +    
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200

Query: 98  VR------EQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQ--------LNERAKLSMLR 143
            R      E  +  L N++            Q       A          + ++   M  
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260

Query: 144 NATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSND-EEVLTDACWALSYLSDGTNDKIQ 202
           N    L           +     A+     L+  +  +  L     AL  L+        
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320

Query: 203 A-----VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLG 257
                  ++    P++  LL   +  V+      + N+          ++     P +  
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTR 378

Query: 258 LLTHSHKKS-----IKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFD-IKK 311
           LLT     +     I   AC+T+ N+ A      +    + ++  ++NL +++      +
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAE 438

Query: 312 EAAWAISN 319
            A   +S+
Sbjct: 439 AARLLLSD 446

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (187), Expect = 9e-16
 Identities = 30/302 (9%), Positives = 72/302 (23%), Gaps = 16/302 (5%)

Query: 124 GALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRP-ALPALAQLVHSNDEEV 182
           G  IP   Q              + + + C           +   +  L  L+ S ++ V
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60

Query: 183 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ 242
              A  AL  L   +                V LL     + +   L  +   ++  D  
Sbjct: 61  QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 243 TQCIITYGALPYLLGLL--------------THSHKKSIKKEACWTISNITAGNRDQIQA 288
            + +I          ++                     +   A   + N+++ +  +   
Sbjct: 121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTM 180

Query: 289 VIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP 348
              +GL+  L+  +QN     + +     +                    + L       
Sbjct: 181 RNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240

Query: 349 DPRIVTV-CLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 407
                +  C     + +     +  +     +      L         +  +     +  
Sbjct: 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDAT 300

Query: 408 YE 409
            E
Sbjct: 301 LE 302

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 4e-24
 Identities = 67/477 (14%), Positives = 123/477 (25%), Gaps = 88/477 (18%)

Query: 7   SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTN 66
           ++D             L        +  + +SG +P  V+ L       + F A   L N
Sbjct: 71  TNDVETARCTAGTLHNL--SHHREGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHN 127

Query: 67  IASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGAL 126
           +          V   G +   V LL   +          L  +A  +   + ++L+ G  
Sbjct: 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 187

Query: 127 IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDA 186
             L+  +       +L   +  L          P       + AL   +    + ++ + 
Sbjct: 188 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 247

Query: 187 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCI 246
            W L  LSD    +       G+   LV+LLG    +V+  A   + N+   +      +
Sbjct: 248 LWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV 304

Query: 247 ITY-----------------------------------------------GALPYLLGLL 259
                                                               LP ++ LL
Sbjct: 305 CQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLL 364

Query: 260 THSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN 319
                  + K     I N+     +    + + G +  LV LL  A  D ++  +   + 
Sbjct: 365 HPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 423

Query: 320 ATSGGT--------------------HEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEG 359
                                           +     I     L   P   I  V    
Sbjct: 424 QQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGV 483

Query: 360 LENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILE 416
           L  +              A   + A+ +E       +  L    N  +   A  +L 
Sbjct: 484 LCEL--------------AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 526

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.0 bits (242), Expect = 1e-22
 Identities = 53/306 (17%), Positives = 100/306 (32%), Gaps = 5/306 (1%)

Query: 82  GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSM 141
            A+P   KLL      V  +A   +  ++        ++ S   +  ++  +     +  
Sbjct: 17  RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 76

Query: 142 LRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKI 201
            R    TL N    +           +PAL +++ S  + VL  A   L  L        
Sbjct: 77  ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 202 QAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH 261
            AV  AG   ++V LL   +   L      +  +  G+      I+  G    L+ ++  
Sbjct: 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 196

Query: 262 SHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT 321
              + +       +  + +       A+++AG +  L   L +    + +   W + N  
Sbjct: 197 YTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL- 254

Query: 322 SGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVN 381
              +    K    EG +  L  L    D  +VT     L N+       K M      + 
Sbjct: 255 ---SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 311

Query: 382 QYAQLV 387
              + V
Sbjct: 312 ALVRTV 317

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.8 bits (231), Expect = 3e-21
 Identities = 70/473 (14%), Positives = 134/473 (28%), Gaps = 64/473 (13%)

Query: 7   SDDSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQFEAAWALT 65
            +D  +  +A     +L   E       +++S  +V   V  +   +  +     A  L 
Sbjct: 28  DEDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLH 85

Query: 66  NIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA 125
           N++    E    +   G +P  VK+L SP D V   A+  L N+       +  V   G 
Sbjct: 86  NLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGG 144

Query: 126 LIPLLAQ------------------------------------------LNERAKLSMLR 143
           L  ++A                                           +       +L 
Sbjct: 145 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 204

Query: 144 NATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQA 203
             +  L          P       + AL   +    + ++ +  W L  LSD    +   
Sbjct: 205 TTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG- 263

Query: 204 VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH 263
               G+   LV+LLG    +V+  A   + N+   +      +   G +  L+  +  + 
Sbjct: 264 --MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 321

Query: 264 KKSIKKE----ACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN 319
            +    E    A   +++          AV     +  +V LL         +A   +  
Sbjct: 322 DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR 381

Query: 320 ATSGGTHEQIKYLVREGCIKPLCDLFVCPDP---------RIVTVCLEGLENILKVGEAE 370
             +            +G I  L  L V                   +EG+     V    
Sbjct: 382 NLALCPANHAPL-REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCT 440

Query: 371 KNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEED 423
             +     DV+    ++     +     L       I   A  +L     +++
Sbjct: 441 GALHILARDVHN-RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE 492

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.2 bits (219), Expect = 1e-19
 Identities = 63/386 (16%), Positives = 132/386 (34%), Gaps = 18/386 (4%)

Query: 36  IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPS 95
           + +  +P   + L  ED   +  +AA  +  ++   +    ++     V   V+ + + +
Sbjct: 14  LATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN 72

Query: 96  D-DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 154
           D +        L N++         +   G +  L+  L      S+L  A  TL N   
Sbjct: 73  DVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVD-SVLFYAITTLHNLLL 130

Query: 155 GKPQPPFDQVRP-ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 213
            +            L  +  L++  + + L      L  L+ G  +    ++ +G    L
Sbjct: 131 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 190

Query: 214 VELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACW 273
           V ++   +   L+     V  +++        I+  G +  L   LT   ++ + +   W
Sbjct: 191 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQR-LVQNCLW 249

Query: 274 TISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLV 333
           T+ N++     Q       GL+G LV LL + + ++   AA  +SN T      ++    
Sbjct: 250 TLRNLSDAATKQEGM---EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ 306

Query: 334 REGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGL 393
             G    +  +    D   +T              A +++ +   +       V    GL
Sbjct: 307 VGGIEALVRTVLRAGDREDITEPAIC---------ALRHLTSRHQEAEMAQNAVRLHYGL 357

Query: 394 EKIENLQSHDNNEIYEKAVKILETYW 419
             +  L    ++    KA   L    
Sbjct: 358 PVVVKLLHPPSHWPLIKATVGLIRNL 383

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.6 bits (202), Expect = 2e-17
 Identities = 24/209 (11%), Positives = 72/209 (34%), Gaps = 2/209 (0%)

Query: 197 TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLL 256
            N +  A +     P L +LL      V+  A   V  +   +  +   + +   +  ++
Sbjct: 6   INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 65

Query: 257 GLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWA 316
             + +++     +    T+ N++  +R+ + A+  +G +  LV +L +    +   A   
Sbjct: 66  RTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITT 124

Query: 317 ISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTA 376
           + N            +   G ++ +  L    + + + +  + L+ +    +  K +  A
Sbjct: 125 LHNLLL-HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA 183

Query: 377 TADVNQYAQLVEEAEGLEKIENLQSHDNN 405
           +        ++      + +         
Sbjct: 184 SGGPQALVNIMRTYTYEKLLWTTSRVLKV 212

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.1 bits (198), Expect = 5e-17
 Identities = 63/364 (17%), Positives = 113/364 (31%), Gaps = 29/364 (7%)

Query: 24  LSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGA 83
           L+         ++ SG     V  +    Y +L       +  + S  S N   +++ G 
Sbjct: 170 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLL-WTTSRVLKVLSVCSSNKPAIVEAGG 228

Query: 84  VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLR 143
           +      L  PS  + +  +W L N++  + +   +    G L+ LL   +         
Sbjct: 229 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAG 288

Query: 144 NATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE--EVLTDACWALSYLSDGTNDKI 201
             +    N  + K          AL          ++  E    A   L+          
Sbjct: 289 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQ 348

Query: 202 QAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH 261
            AV      P +V+LL  PS   LI A   +   +         +   GA+P L+ LL  
Sbjct: 349 NAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR 408

Query: 262 SHKK---------------------SIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 300
           +H+                       I +     +  + A +      +     +   V 
Sbjct: 409 AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHIL-ARDVHNRIVIRGLNTIPLFVQ 467

Query: 301 LLQNAEFDIKKEAAWAISN-ATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEG 359
           LL +   +I++ AA  +   A      E I     EG   PL +L    +  + T     
Sbjct: 468 LLYSPIENIQRVAAGVLCELAQDKEAAEAI---EAEGATAPLTELLHSRNEGVATYAAAV 524

Query: 360 LENI 363
           L  +
Sbjct: 525 LFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (157), Expect = 5e-12
 Identities = 30/172 (17%), Positives = 58/172 (33%), Gaps = 44/172 (25%)

Query: 23  LLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG 82
           L+ +      +   ++ +     +F+      ++      AL  +A     N  V+    
Sbjct: 402 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-VHNRIVIRGLN 460

Query: 83  AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSML 142
            +P+FV+LL SP ++++  A   L  +A D     + + ++G                  
Sbjct: 461 TIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEG------------------ 501

Query: 143 RNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS 194
                                   A   L +L+HS +E V T A   L  +S
Sbjct: 502 ------------------------ATAPLTELLHSRNEGVATYAAAVLFRMS 529

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.4 bits (228), Expect = 7e-22
 Identities = 42/260 (16%), Positives = 90/260 (34%), Gaps = 9/260 (3%)

Query: 26  IERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVP 85
           +E+      V+   + P   E     D  Q +  A   L ++     +N         + 
Sbjct: 4   VEQMKSCLRVLSQPMPPTAGEAEQAAD-QQEREGALELLADLCE-NMDNAADFCQLSGMH 61

Query: 86  IFV-KLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRN 144
           + V + L + +  +R +A   +G  + +    ++ VL  GAL  LL  L+  A  ++   
Sbjct: 62  LLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVK 121

Query: 145 ATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQA 203
           A + +S   R +               L + +    +++   + + L  L  G  +    
Sbjct: 122 ALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGT 181

Query: 204 VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD-----DFQTQCIITYGALPYLLGL 258
           +   G+  +LV L+           L  + ++VT       + +   +     L +   L
Sbjct: 182 LCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQL 241

Query: 259 LTHSHKKSIKKEACWTISNI 278
           L    +   + E C  +   
Sbjct: 242 LQQHEEYQEELEFCEKLLQT 261

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (155), Expect = 1e-11
 Identities = 44/300 (14%), Positives = 92/300 (30%), Gaps = 32/300 (10%)

Query: 9   DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIA 68
            ++++L AT      L   ++   +E  +  ++    E     D  +++  A   L  I 
Sbjct: 186 SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIM 244

Query: 69  SGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIP 128
           S   +  +  +      I ++ + S  D+V  Q +    NV  +                
Sbjct: 245 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR 304

Query: 129 LLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACW 188
                ++      L+     L+                          +  +E   D  W
Sbjct: 305 PPEHTSKFYAKGALQYLVPILTQ-----------------------TLTKQDENDDDDDW 341

Query: 189 ALSYLSDGTNDKIQAVIEAGVC----PRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ 244
                +      +    E  +     P + E + +P       A+   G I+ G +    
Sbjct: 342 NPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL 401

Query: 245 CIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN 304
             +   A+P L+ L+       ++  A WT+  I        +A I+   + PL+  L  
Sbjct: 402 KPLVIQAMPTLIELMKDPSVV-VRDTAAWTVGRIC---ELLPEAAINDVYLAPLLQCLIE 457

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (154), Expect = 2e-11
 Identities = 51/388 (13%), Positives = 127/388 (32%), Gaps = 26/388 (6%)

Query: 54  PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 113
              +F A   L       S       +   V + +KLL   + +V+  AV  LG +    
Sbjct: 17  KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLV--- 73

Query: 114 PRCRDLVLSQ--GALIPLLAQLNERAK---LSMLRNATWTLSNFCRGKPQPPFDQVRPAL 168
            + ++  +      L   +    E+ +      L+     L     G         +   
Sbjct: 74  SKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITG 133

Query: 169 PALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPA 228
              + +    D  V  +A   ++ +       +     + +   L+  L  P  +V    
Sbjct: 134 RLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS-ILTCLLPQLTSPRLAVRKRT 192

Query: 229 LRTVGNIVT--GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 286
           +  +G++V   G+            + +LL  L+ +   S  +     I+ I+     +I
Sbjct: 193 IIALGHLVMSCGNIVFVD------LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRI 246

Query: 287 QAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV 346
              ++  ++  +V      + ++++    A  +       E   ++     I  +C  ++
Sbjct: 247 GEYLEK-IIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVST---IINICLKYL 302

Query: 347 CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEE-----AEGLEKIENLQS 401
             DP       +  EN +     + +   +  + +    +  +     A+ L+ + + + 
Sbjct: 303 TYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH 362

Query: 402 HDNNEIYEKAVKILETYWLEEDDETIAA 429
               E Y+     L + + E ++   A 
Sbjct: 363 EMLPEFYKTVSPALISRFKEREENVKAD 390

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 7e-09
 Identities = 31/248 (12%), Positives = 80/248 (32%), Gaps = 25/248 (10%)

Query: 32   IEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL 91
              +   + V     +         ++  A  +L  +      + ++ +      + ++  
Sbjct: 807  CPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLEL----KSVILEAF 862

Query: 92   ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSM-LRNATWTLS 150
            +SPS++V+  A +ALG+++  +            L  +L ++  + K    L ++   + 
Sbjct: 863  SSPSEEVKSAASYALGSISVGNL--------PEYLPFVLQEITSQPKRQYLLLHSLKEII 914

Query: 151  NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 210
            +        P+  V      L +     +E         L         K+  +    + 
Sbjct: 915  SSASVVGLKPY--VENIWALLLKHCECAEEGTRNVVAECLG--------KLTLIDPETLL 964

Query: 211  PRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKE 270
            PRL   L   S       +  V   ++        ++    +   L  L      ++++ 
Sbjct: 965  PRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK-NCIGDFLKTLEDPD-LNVRRV 1022

Query: 271  ACWTISNI 278
            A  T ++ 
Sbjct: 1023 ALVTFNSA 1030

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 7e-06
 Identities = 33/178 (18%), Positives = 52/178 (29%), Gaps = 15/178 (8%)

Query: 7    SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTN 66
                 L L +  +     S+    P  E I + ++               +   A  L  
Sbjct: 900  PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLK-----HCECAEEGTRNVVAECLGK 954

Query: 67   IASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGAL 126
            +     E          +P     L S S   R   V A+     D P+  D +L     
Sbjct: 955  LTLIDPET--------LLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKN--C 1004

Query: 127  IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLT 184
            I    +  E   L++ R A  T ++    KP    D +   LP L        E +  
Sbjct: 1005 IGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIRE 1062

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.003
 Identities = 31/257 (12%), Positives = 84/257 (32%), Gaps = 29/257 (11%)

Query: 167 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 226
            +  L + + S+D++    A   L       + K+    E  V   +++LL   +  V  
Sbjct: 4   HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQN 63

Query: 227 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG----- 281
            A++ +G +V+         I    +  L   +    K+ ++  +   +  +        
Sbjct: 64  LAVKCLGPLVSKVKEYQVETI----VDTLCTNMLSD-KEQLRDISSIGLKTVIGELPPAS 118

Query: 282 NRDQIQAVIDAGLVGPLVNLLQNAE-FDIKKEAAWAISNATSGGTHEQIKYLVREGCIKP 340
           +   + A +   + G L + +   E   ++ EA   +++  S      + +      +  
Sbjct: 119 SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH--PSILTC 176

Query: 341 LCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ 400
           L      P   +    +  L +++            +     +  L+E       +  L 
Sbjct: 177 LLPQLTSPRLAVRKRTIIALGHLVM-----------SCGNIVFVDLIEHL-----LSELS 220

Query: 401 SHDNNEIYEKAVKILET 417
            +D+       ++ +  
Sbjct: 221 KNDSMSTTRTYIQCIAA 237

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 3e-07
 Identities = 35/199 (17%), Positives = 63/199 (31%), Gaps = 10/199 (5%)

Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR--GKPQPPFDQVRPALPALAQLVHSN 178
           L+Q  L        E      +  A   LS      G            L  + Q +   
Sbjct: 618 LAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK 677

Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV-- 236
             EV   +   L  L+      ++  I     P L   L     SV   A   +G I   
Sbjct: 678 MPEVRQSSFALLGDLTKACFQHVKPCIAD-FMPILGTNLNPEFISVCNNATWAIGEISIQ 736

Query: 237 TGDDFQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
            G + Q         L  L+ ++   +  K++ +    TI  +      ++  ++    +
Sbjct: 737 MGIEMQPYIP---MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQ-FI 792

Query: 296 GPLVNLLQNAEFDIKKEAA 314
            P    L+N   + +K++A
Sbjct: 793 RPWCTSLRNIRDNEEKDSA 811

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 3e-06
 Identities = 37/320 (11%), Positives = 91/320 (28%), Gaps = 22/320 (6%)

Query: 34  EVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGA--VPIFVKLL 91
            V +  ++P  +  L    +          +  + +      + +I +    +P  ++ L
Sbjct: 386 NVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCL 445

Query: 92  ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN 151
           +     VR    W L   A            +  +  LL ++ +  K  +   A    + 
Sbjct: 446 SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK-RVQEAACSAFAT 504

Query: 152 FCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKI-QAVIEAGVC 210
                       +   L  L         + L     A+  L+D     + +      + 
Sbjct: 505 LEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLM 564

Query: 211 PRLVELLGHP--SPSVLIPALRTVGNIVT--GDDFQT-------------QCIITYGALP 253
           P L++           L P L  + ++ T     F               Q  +    L 
Sbjct: 565 PPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLN 624

Query: 254 YLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDA-GLVGPLVNLLQNAEFDIKKE 312
                   +  K     A   +S +  G    I+ ++    ++  +   +Q+   ++++ 
Sbjct: 625 NAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQS 684

Query: 313 AAWAISNATSGGTHEQIKYL 332
           +   + + T          +
Sbjct: 685 SFALLGDLTKACFQHVKPCI 704

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 50/312 (16%), Positives = 98/312 (31%), Gaps = 19/312 (6%)

Query: 7   SDDSSLQLEATTQFRKLLS---IERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWA 63
           S+D   +  +    +  +          + + I+S  +       + +  P ++      
Sbjct: 57  SEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLN-----NIGDSSPLIRATVGIL 111

Query: 64  LTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQ 123
           +T IAS              +P    LL S   +  E A  AL  +  DS    D  +  
Sbjct: 112 ITTIASKGELQNW----PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLD 167

Query: 124 G---ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 180
                +IP   Q  + +   +  +A   ++ F   + Q     +      L  L    + 
Sbjct: 168 RPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEP 227

Query: 181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240
           EV  + C AL  L +   D++   +   +   +++       +V   AL      +T  +
Sbjct: 228 EVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENV---ALEACEFWLTLAE 283

Query: 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 300
                 +    LP L+ +L +  K S                    +  I          
Sbjct: 284 QPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTV 343

Query: 301 LLQNAEFDIKKE 312
             Q+ E  I++E
Sbjct: 344 AQQHDEDGIEEE 355

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 38/226 (16%), Positives = 78/226 (34%), Gaps = 35/226 (15%)

Query: 9   DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIA 68
           D    + A      L         + V +S ++    +  M++  P+++  +   L ++ 
Sbjct: 635 DKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQ-CMQDKMPEVRQSSFALLGDLT 693

Query: 69  SGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA---GD--SPRCRDLVLSQ 123
               ++ K  I    +PI    L      V   A WA+G ++   G    P    ++   
Sbjct: 694 KACFQHVKPCIAD-FMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVL--- 749

Query: 124 GALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVL 183
             L+ ++         ++L N   T+       P     +V P L            + +
Sbjct: 750 HQLVEIIN--RPNTPKTLLENTAITIGRLGYVCP----QEVAPMLQ-----------QFI 792

Query: 184 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPAL 229
              C +L  + D   +K  A    G+C  ++ +    +PS +I   
Sbjct: 793 RPWCTSLRNIRD-NEEKDSAF--RGIC-TMISV----NPSGVIQDF 830

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 44.8 bits (104), Expect = 9e-06
 Identities = 28/312 (8%), Positives = 68/312 (21%), Gaps = 57/312 (18%)

Query: 18  TQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV 77
           ++   L +  +    +E+ +          L+ +     +  +A  L             
Sbjct: 7   SKEYGLYNQCKKLNDDELFR----------LLDDHNSLKRISSARVLQLRG--------- 47

Query: 78  VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA 137
                AV + ++  +  +   R+   + LG +                   L        
Sbjct: 48  --GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE------DNVFNILNNMALNDK 99

Query: 138 KLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT 197
              +   A  + +  C+  P          +             V     +A+S ++D  
Sbjct: 100 SACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKA 155

Query: 198 -----------NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCI 246
                       +       A                 +         +           
Sbjct: 156 TIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYR 215

Query: 247 ITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAE 306
                L  L   L  +    +  +       +            D  L+  L  +L   +
Sbjct: 216 KDKRVLSVLCDELKKNT---VYDDIIEAAGELG-----------DKTLLPVLDTMLYKFD 261

Query: 307 -FDIKKEAAWAI 317
             +I   A   +
Sbjct: 262 DNEIITSAIDKL 273

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 3e-05
 Identities = 19/147 (12%), Positives = 47/147 (31%), Gaps = 9/147 (6%)

Query: 48  LMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALG 107
            + +    ++  A   L  +     +          +P  + +   P+   R   ++ + 
Sbjct: 449 WLVDHVYAIREAATSNLKKLVEKFGKEW---AHATIIPKVLAMSGDPNYLHRMTTLFCIN 505

Query: 108 NVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPA 167
            ++    +  D+      ++P + ++      ++  N   +L                  
Sbjct: 506 VLSEVCGQ--DITTKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSE--V 559

Query: 168 LPALAQLVHSNDEEVLTDACWALSYLS 194
            P L +L    D +V   A  AL+ LS
Sbjct: 560 KPILEKLTQDQDVDVKYFAQEALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 13/101 (12%), Positives = 37/101 (36%), Gaps = 8/101 (7%)

Query: 33  EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA 92
           +E   + ++P+ +      +Y        + +  ++    ++   +     +P  +++  
Sbjct: 474 KEWAHATIIPKVLAMSGDPNYLHRM-TTLFCINVLSEVCGQD---ITTKHMLPTVLRMAG 529

Query: 93  SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQL 133
            P  +VR     +L  +        D    Q  + P+L +L
Sbjct: 530 DPVANVRFNVAKSLQKIG----PILDNSTLQSEVKPILEKL 566

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 21/194 (10%), Positives = 56/194 (28%), Gaps = 12/194 (6%)

Query: 42  PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQ 101
              +  L  +   +++      +  +A           D     + +  L      +RE 
Sbjct: 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIREA 460

Query: 102 AVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF 161
           A   L  +     +      +   +IP +  ++            + ++       Q   
Sbjct: 461 ATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT 516

Query: 162 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS 221
            +    LP + ++       V  +   +L  +    ++     +++ V P L +L     
Sbjct: 517 TKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS---TLQSEVKPILEKLTQDQD 571

Query: 222 PSVLIPALRTVGNI 235
             V   A   +  +
Sbjct: 572 VDVKYFAQEALTVL 585

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 4e-04
 Identities = 29/287 (10%), Positives = 80/287 (27%), Gaps = 43/287 (14%)

Query: 84  VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLR 143
             +    + SP  ++R  +   L  ++ D+                   L +       R
Sbjct: 7   AQLLENSILSPDQNIRLTSETQLKKLSNDNF--------LQFAGLSSQVLIDENTKLEGR 58

Query: 144 NATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQA 203
                                  A   L   + S D              +     ++  
Sbjct: 59  IL---------------------AALTLKNELVSKDSVK-------TQQFAQRWITQVSP 90

Query: 204 VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH 263
             +  +    +  L    P +   A + +  I   +            +  ++       
Sbjct: 91  EAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWP---ELMKIMVDNTGAEQ 147

Query: 264 KKSIKKEACWTISNITAGNRDQIQAVIDA--GLVGPLVNLLQNAEF--DIKKEAAWAISN 319
            +++K+ +   +  +      Q QA++ +   ++  +V   Q+ E    ++  A  A+++
Sbjct: 148 PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALAD 207

Query: 320 ATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV 366
           +     +   +   R   ++ +C+     D  +       L  I+  
Sbjct: 208 SLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSK 254

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 29/213 (13%), Positives = 67/213 (31%), Gaps = 14/213 (6%)

Query: 29  SPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV 88
           SP  +  I++  +       +    P++   AA  +  IA     +         + I V
Sbjct: 89  SPEAKNQIKTNALT-----ALVSIEPRIANAAAQLIAAIADIELPHGAW---PELMKIMV 140

Query: 89  KLLASPSDD-VREQAVWALGNVAGDSPRCRDLVLSQ--GALIPLLAQLNERAKLSMLR-N 144
               +   + V+  ++ ALG +   +      ++S     LI ++           +R  
Sbjct: 141 DNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLA 200

Query: 145 ATWTLSNF--CRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQ 202
           A   L++             +    +  + +   + D EV   A   L  +       ++
Sbjct: 201 ALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMK 260

Query: 203 AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
             +E  +    +  +  P+  V    +     I
Sbjct: 261 PYMEQALYALTIATMKSPNDKVASMTVEFWSTI 293

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 38.6 bits (89), Expect = 9e-04
 Identities = 23/161 (14%), Positives = 46/161 (28%), Gaps = 22/161 (13%)

Query: 81  HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLA--QLNERAK 138
           +  V     L+    + VR    + L        +   L+  +   + +    +L     
Sbjct: 65  YSPVEALTPLIRDSDEVVRRAVAYRLP-----REQLSALMFDEDREVRITVADRLPLEQL 119

Query: 139 LSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDAC--WALSYLSDG 196
             M  +  + +  +   +  P           L + +   D +V            L   
Sbjct: 120 EQMAADRDYLVRAYVVQRIPP---------GRLFRFMRDEDRQVRKLVAKRLPEESLGLM 170

Query: 197 TNDKI----QAVIEAGVCPRLVELLGHPSPSVLIPALRTVG 233
           T D      + V        L+ELL  P  +V + A+    
Sbjct: 171 TQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHAS 211

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 111

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 19/140 (13%), Positives = 36/140 (25%), Gaps = 34/140 (24%)

Query: 91  LASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS 150
           +A  +  VR     AL  +  +            A  PLL  L+          A    +
Sbjct: 1   MADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGN 48

Query: 151 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 210
                           A+  L +L+  +   V + A  +L  +                 
Sbjct: 49  FQD-----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGGERV-----------R 86

Query: 211 PRLVELLGHPSPSVLIPALR 230
             + +L    +      A+ 
Sbjct: 87  AAMEKLAETGTGFARKVAVN 106

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	454
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.82
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.81
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.78
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.75
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.68
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.61
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.53
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.46
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.45
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.37
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.36
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.29
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.26
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.24
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.22
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.15
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.11
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.04
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.98
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.94
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.69
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.61
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.58
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.45
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.6
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	97.26
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	97.07
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.99
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	96.9
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.76
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.64
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	95.88
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	95.4
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	94.85
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	94.79
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	93.26
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	90.76
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	90.71
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	89.59
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	89.34
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	88.59
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	86.27

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-45  Score=358.53  Aligned_cols=419  Identities=59%  Similarity=0.913  Sum_probs=381.6

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      ++.++++|++.+..|+..++++++....+..+.+++.|++|.|+++++.+.++.++..|+++|.+++.+++.....+.+.
T Consensus        82 ~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~  161 (503)
T d1wa5b_          82 TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA  161 (503)
T ss_dssp             HHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            45678999999999999999999877678899999999999999999976658899999999999999888888999999


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC-CCCC
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPP  160 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~  160 (454)
                      |+++.++.+|.+++.+++..++|+|+|++.+++..+..+...|+++.++.++ .+.+..++..++|++.+++... +...
T Consensus       162 g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll-~~~~~~~~~~~~~~l~nl~~~~~~~~~  240 (503)
T d1wa5b_         162 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPD  240 (503)
T ss_dssp             TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred             CChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhc-ccCCHHHHHHHHHHHHHHhcCCccchH
Confidence            9999999999999999999999999999999999999999999999999999 6667889999999999999876 5556


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897          161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD  240 (454)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  240 (454)
                      .....+++|.+..++.+.+++++..++++|.+++...+.....+.+.++++.++.++.++++.++..++.++++++.+.+
T Consensus       241 ~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~  320 (503)
T d1wa5b_         241 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND  320 (503)
T ss_dssp             HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHH
Confidence            66778999999999999999999999999999999888888889999999999999999999999999999999999888


Q ss_pred             cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHh
Q 012897          241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA  320 (454)
Q Consensus       241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  320 (454)
                      .....+++.|+++.+..+++++ ++.++..++|+++|++.+++.....+++.++++.++.++.+.+.+++..|+|+|.|+
T Consensus       321 ~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl  399 (503)
T d1wa5b_         321 LQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA  399 (503)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHH
Confidence            7788888999999999999999 999999999999999999899998999999999999999999999999999999999


Q ss_pred             cCCC--CHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHH
Q 012897          321 TSGG--THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIEN  398 (454)
Q Consensus       321 ~~~~--~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~  398 (454)
                      +..+  .++....+.+.|+++.|++++...++++...++.+|.++++.+.........  ..+.+...+.+.|+++.|+.
T Consensus       400 ~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~--~~~~~~~~iee~g~~~~i~~  477 (503)
T d1wa5b_         400 SSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGL--NINENADFIEKAGGMEKIFN  477 (503)
T ss_dssp             HHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTC--SSCHHHHHHHHTTHHHHHHG
T ss_pred             HhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcc--cchHHHHHHHHCCCHHHHHH
Confidence            8754  3466788899999999999999999999999999999999877654332111  45678899999999999999


Q ss_pred             HhcCCCHHHHHHHHHHHHHhcCcCCC
Q 012897          399 LQSHDNNEIYEKAVKILETYWLEEDD  424 (454)
Q Consensus       399 l~~~~~~~v~~~a~~~l~~~~~~~~~  424 (454)
                      |+++++++++++|.+++++||++|||
T Consensus       478 Lq~~~~~~i~~~A~~il~~~f~~~~~  503 (503)
T d1wa5b_         478 CQQNENDKIYEKAYKIIETYFGEEED  503 (503)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred             HHcCCCHHHHHHHHHHHHHHcCCcCC
Confidence            99999999999999999999988775

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.6e-45  Score=345.79  Aligned_cols=412  Identities=52%  Similarity=0.875  Sum_probs=375.2

Q ss_pred             CcccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897            1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID   80 (454)
Q Consensus         1 lv~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (454)
                      +++.|+++|++.+..|+.+++++++....+..+.+++.|++|.|+++|++.++++++..|+++|.+++..+++.+..+++
T Consensus        18 lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~   97 (434)
T d1q1sc_          18 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD   97 (434)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhh
Confidence            36778999999999999999999887656668889999999999999987665899999999999999888889999999


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhh----hhhHHHHHHHHHHhhcCCC
Q 012897           81 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA----KLSMLRNATWTLSNFCRGK  156 (454)
Q Consensus        81 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~----~~~~~~~a~~~L~~l~~~~  156 (454)
                      .|+++.++.+|.++++++++.++++|++++.+.+..+..+...++++.++.++....    .......+++++.+++...
T Consensus        98 ~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~  177 (434)
T d1q1sc_          98 GGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK  177 (434)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCC
T ss_pred             ccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999999999999999999999999999985432    2356678889999999876


Q ss_pred             -CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHh
Q 012897          157 -PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI  235 (454)
Q Consensus       157 -~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  235 (454)
                       .........++++.+..++.+++++++..+++++.+++...+.....+...++++.++.++.++++.++..++.++.++
T Consensus       178 ~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l  257 (434)
T d1q1sc_         178 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI  257 (434)
T ss_dssp             TTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhH
Confidence             4445556788999999999999999999999999999988887777788889999999999999999999999999999


Q ss_pred             hccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHH
Q 012897          236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAW  315 (454)
Q Consensus       236 ~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~  315 (454)
                      +.+++.....+++.|+++.+..++.++ ++.++..+++++++++...++....+.+.|+++.++.++.+++++++..|++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~  336 (434)
T d1q1sc_         258 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAW  336 (434)
T ss_dssp             TTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHH
T ss_pred             HhhhhHHHHHHHhccccchHHHhhccc-chhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHH
Confidence            998887788888999999999999999 9999999999999999988888888889999999999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHH
Q 012897          316 AISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEK  395 (454)
Q Consensus       316 aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~  395 (454)
                      +|.+++...+.+....+.+.|+++.|+++++.++++++..++++|.++++.++...       ..+.+...+.+.|+++.
T Consensus       337 ~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~-------~~~~~~~~~~~~~~~~~  409 (434)
T d1q1sc_         337 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEECGGLDK  409 (434)
T ss_dssp             HHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHHTTSHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcC-------CcHHHHHHHHHcCCHHH
Confidence            99999998888888889999999999999999999999999999999998877543       45568899999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcC
Q 012897          396 IENLQSHDNNEIYEKAVKILETYWL  420 (454)
Q Consensus       396 l~~l~~~~~~~v~~~a~~~l~~~~~  420 (454)
                      |+.|++|+|+++++.|.++|++||.
T Consensus       410 i~~L~~~~n~~i~~~a~~il~~~f~  434 (434)
T d1q1sc_         410 IEALQRHENESVYKASLNLIEKYFS  434 (434)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHCC
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999984

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-32  Score=266.79  Aligned_cols=360  Identities=26%  Similarity=0.357  Sum_probs=313.7

Q ss_pred             ccccc-CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897            2 VAGVW-SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID   80 (454)
Q Consensus         2 v~~L~-s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (454)
                      ++.|+ +.++.++..|+++|.++++.. +.....+.+.|+++.++.+|.+++ ++++..|+++|++++..+++.+..+.+
T Consensus       125 v~~l~~~~~~~iq~~a~~~L~ni~~~~-~~~~~~~~~~g~i~~l~~lL~s~~-~~i~~~a~~~L~nia~~~~~~r~~l~~  202 (503)
T d1wa5b_         125 VEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDYRDYVLQ  202 (503)
T ss_dssp             HHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHhCCChHHHHHHhcCCC-hhHHHHHHHHHHHHhhhhHHHHHHHHh
Confidence            44565 457889999999999999875 556778889999999999999999 899999999999999988999999999


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCC-C
Q 012897           81 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ-P  159 (454)
Q Consensus        81 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~  159 (454)
                      .|+++.|+.++.+.+..++..++|++.+++.............++++.++.++ .+.+.+++..++|++.+++...+. .
T Consensus       203 ~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l-~~~d~~~~~~~~~~l~~l~~~~~~~~  281 (503)
T d1wa5b_         203 CNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSDGPQEAI  281 (503)
T ss_dssp             TTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             hcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHhhccCCchhh
Confidence            99999999999999999999999999999976544444445567899999998 677889999999999999986532 2


Q ss_pred             ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccC
Q 012897          160 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD  239 (454)
Q Consensus       160 ~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  239 (454)
                      ......++++.++.++.++++.++..++.++++++...+.....+.+.|+++.+..++.++++.++..++++|+|++.++
T Consensus       282 ~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~  361 (503)
T d1wa5b_         282 QAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN  361 (503)
T ss_dssp             HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             hhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcc
Confidence            33445789999999999999999999999999999988888888889999999999999999999999999999999988


Q ss_pred             ccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcC---CHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHH
Q 012897          240 DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG---NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWA  316 (454)
Q Consensus       240 ~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a  316 (454)
                      +.....+++.++++.++..+.+. +..++..|+|+|+|++.+   .++....+++.|+++.|++++...++++...++.+
T Consensus       362 ~~~~~~i~~~~~l~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~  440 (503)
T d1wa5b_         362 TEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDA  440 (503)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHccccchhHHhcccC-ChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHH
Confidence            88888888999999999999999 899999999999999962   35667788899999999999999999999999999


Q ss_pred             HHHhcCCC----------CHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 012897          317 ISNATSGG----------THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILK  365 (454)
Q Consensus       317 L~~l~~~~----------~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~  365 (454)
                      |.++...+          .......+.+.|+++.|..+..+++.++...|...|.+++.
T Consensus       441 l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~  499 (503)
T d1wa5b_         441 LENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFG  499 (503)
T ss_dssp             HHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            99987432          12334456778999999888889999999999988887764

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.2e-32  Score=258.65  Aligned_cols=359  Identities=26%  Similarity=0.414  Sum_probs=308.8

Q ss_pred             ccccc-CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897            2 VAGVW-SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID   80 (454)
Q Consensus         2 v~~L~-s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (454)
                      ++.|+ ++++++|..|+++|.++++.. ++....+++.|+++.++.+|.+++ +.+++.|+++|++++..+++.+..+.+
T Consensus        62 v~lL~~~~~~~v~~~a~~~L~~la~~~-~~~~~~i~~~~~i~~l~~~L~~~~-~~~~~~a~~~L~nl~~~~~~~~~~i~~  139 (434)
T d1q1sc_          62 VSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIK  139 (434)
T ss_dssp             HHHTTCGGGHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHhcCC-hhhhhHhhhccchhhhhhccccCC-HHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            45565 456899999999999998775 566788899999999999999998 999999999999999988899999999


Q ss_pred             CCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCC
Q 012897           81 HGAVPIFVKLLASPS-----DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  155 (454)
Q Consensus        81 ~g~i~~L~~lL~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  155 (454)
                      .|+++.++.++...+     ......+++++.+++.............++++.+..++ .+.+++++..+++++.+++..
T Consensus       140 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~a~~~l~~l~~~  218 (434)
T d1q1sc_         140 HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTDG  218 (434)
T ss_dssp             TTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTSS
T ss_pred             hhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHH-hccccchhhhHHhhhcccchh
Confidence            999999999998743     34567788999999876654444444555688888888 677889999999999999977


Q ss_pred             CCC-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhH
Q 012897          156 KPQ-PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN  234 (454)
Q Consensus       156 ~~~-~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  234 (454)
                      .+. .......++++.++.++.++++.++..++.+|.+++...+.....+++.++++.+..++.+++++++..++++|++
T Consensus       219 ~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~  298 (434)
T d1q1sc_         219 PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSN  298 (434)
T ss_dssp             CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             hhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhh
Confidence            532 2233457899999999999999999999999999998888777888999999999999999999999999999999


Q ss_pred             hhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc-CCHHHHHHHHhCCChHHHHHHhhhcchhhHHHH
Q 012897          235 IVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEA  313 (454)
Q Consensus       235 l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  313 (454)
                      ++.........+.+.++++.++.++.++ +..++..|+|+++|++. .+++....+.+.|+++.|+++++.++++++..+
T Consensus       299 l~~~~~~~~~~i~~~~~i~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~  377 (434)
T d1q1sc_         299 ITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI  377 (434)
T ss_dssp             HTTSCHHHHHHHHHTTCHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHH
T ss_pred             hccccchhHHHHhhhhhHHHHHHHHhcc-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHH
Confidence            9998877777888899999999999999 89999999999999997 567777888899999999999999999999999


Q ss_pred             HHHHHHhcCC----C-CHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHH
Q 012897          314 AWAISNATSG----G-THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENIL  364 (454)
Q Consensus       314 ~~aL~~l~~~----~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~  364 (454)
                      +++|.++...    . .......+.+.|+++.|..+.++++++++..+.+.|.+.+
T Consensus       378 l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~f  433 (434)
T d1q1sc_         378 LDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF  433 (434)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            9999998642    2 2334556677899999999999999999999999887764

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-31  Score=257.48  Aligned_cols=395  Identities=18%  Similarity=0.189  Sum_probs=336.2

Q ss_pred             CcccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897            1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID   80 (454)
Q Consensus         1 lv~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (454)
                      |++.|+++|++++..|+++|.+++... ......+.+.|+++.|+.+|++++ +.++..++++|.+++..+++.+..+..
T Consensus       106 Li~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~  183 (529)
T d1jdha_         106 LVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLIILA  183 (529)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhhccc-chhhhHHHhcCCchHHHHHHHccC-hHHHHHHHHHHHHHhhhhhHHHHHHHh
Confidence            356789999999999999999999875 455667789999999999999999 999999999999999888888999999


Q ss_pred             CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCC
Q 012897           81 HGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP  159 (454)
Q Consensus        81 ~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  159 (454)
                      .|+++.++.++.+ +.+.++..+++++.+++. .+..+..+.+.|+++.++.++ .+++..++..+++++.+++....  
T Consensus       184 ~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~-~~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~l~~ls~~~~--  259 (529)
T d1jdha_         184 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAAT--  259 (529)
T ss_dssp             TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHTTCT--
T ss_pred             cccchHHHHHHHhhhhHHHHHHHHHHHhhhhc-cccccchhhhhhhhhhHHHHh-cccchhhhhhhhhHHHhcccccc--
Confidence            9999999999975 557899999999999975 456788889999999999999 67788999999999999986542  


Q ss_pred             ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC--CCCCcchhhHHHHHhHhhc
Q 012897          160 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG--HPSPSVLIPALRTVGNIVT  237 (454)
Q Consensus       160 ~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~  237 (454)
                      ......++++.+++++.++++.++..++++|.+++..++.....+.+.++++.++..+.  .+.+.++..++.+|.+++.
T Consensus       260 ~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~  339 (529)
T d1jdha_         260 KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  339 (529)
T ss_dssp             TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             chhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccc
Confidence            22334688999999999999999999999999999888888788888999999998884  3556788999999999997


Q ss_pred             cCcc---chhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcch-------
Q 012897          238 GDDF---QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEF-------  307 (454)
Q Consensus       238 ~~~~---~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~-------  307 (454)
                      ....   ....+...++++.++.++.++.+..++..+++++.+++.. ++....+.+.|+++.+++++.+.+.       
T Consensus       340 ~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~  418 (529)
T d1jdha_         340 RHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDTQRRTS  418 (529)
T ss_dssp             SSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHHHHHHHHHC----
T ss_pred             hhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchh-hhhhhhhhhcccHHHHHHHHhcCCHHHHHHHH
Confidence            6542   2334557799999999998875667888999999999875 4556678899999999999976533       


Q ss_pred             ---------------hhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhh
Q 012897          308 ---------------DIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKN  372 (454)
Q Consensus       308 ---------------~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~  372 (454)
                                     ++...++.++..++.  ....+..+...|+++.|+.++.++++.++..++++|.++....+    
T Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~al~~la~--~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~----  492 (529)
T d1jdha_         419 MGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE----  492 (529)
T ss_dssp             -------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHH----
T ss_pred             hhhhhHHhhcccchHHHHHHHHHHHHHHcc--CHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcChh----
Confidence                           456677788888876  55666777788999999999999999999999999999864322    


Q ss_pred             ccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 012897          373 MGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETY  418 (454)
Q Consensus       373 ~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~  418 (454)
                                ....+.+.|+++.|.++++++|+.++..|..+|.++
T Consensus       493 ----------~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l  528 (529)
T d1jdha_         493 ----------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             ----------HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             ----------hHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence                      366888999999999999999999999999988764

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1e-30  Score=254.69  Aligned_cols=397  Identities=17%  Similarity=0.170  Sum_probs=332.7

Q ss_pred             cccc-CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            3 AGVW-SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         3 ~~L~-s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      +.|+ +++++++..|+.+|.+++.+  .+....+++.|+++.|+.+|++++ ++++..|+++|.+++.+++..+..+.+.
T Consensus        66 ~~L~~~~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~Li~lL~~~~-~~v~~~a~~aL~~l~~~~~~~~~~~~~~  142 (529)
T d1jdha_          66 RTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAKMAVRLA  142 (529)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHCCCHHHHHHHhCCCC-HHHHHHHHHHHHHhhcccchhhhHHHhc
Confidence            3454 56899999999999999765  577888999999999999999999 9999999999999999788888889999


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF  161 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  161 (454)
                      |+++.|+.+|++++++++..+++++.+++..++..+..+...|+++.++.++....+..++..+++++.+++.+......
T Consensus       143 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~  222 (529)
T d1jdha_         143 GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPA  222 (529)
T ss_dssp             THHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHH
T ss_pred             CCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccch
Confidence            99999999999999999999999999999888888888999999999999997667788999999999999987655555


Q ss_pred             hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCcc
Q 012897          162 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF  241 (454)
Q Consensus       162 ~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  241 (454)
                      ....++++.++.++.++++.++..+++++.+++......   ....++++.|+.++.++++.++..++++|++++..++.
T Consensus       223 ~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~---~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~  299 (529)
T d1jdha_         223 IVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK  299 (529)
T ss_dssp             HHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHH
T ss_pred             hhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch---hhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhH
Confidence            566889999999999999999999999999998554322   22246789999999999999999999999999988877


Q ss_pred             chhhhhccCChHHHHHhhcC-CcchhHHHHHHHHHHHHhcCC---HHHHHHHHhCCChHHHHHHhhhc-chhhHHHHHHH
Q 012897          242 QTQCIITYGALPYLLGLLTH-SHKKSIKKEACWTISNITAGN---RDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWA  316 (454)
Q Consensus       242 ~~~~~~~~~~l~~L~~~L~~-~~~~~v~~~a~~~L~nl~~~~---~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~a  316 (454)
                      ....+.+.++++.++..+.. ...+.++..++++|.+++...   ......+...+.++.++.++..+ +..++..++++
T Consensus       300 ~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~  379 (529)
T d1jdha_         300 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL  379 (529)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHH
Confidence            77788889999999988843 226788999999999999742   22334455789999999999875 45788899999


Q ss_pred             HHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCC----------------------HHHHHHHHHHHHHHHHhhhhhhhcc
Q 012897          317 ISNATSGGTHEQIKYLVREGCIKPLCDLFVCPD----------------------PRIVTVCLEGLENILKVGEAEKNMG  374 (454)
Q Consensus       317 L~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~----------------------~~v~~~al~~L~~l~~~~~~~~~~~  374 (454)
                      +.+++..  ++....+.+.|+++.|++++.+.+                      ++++..+..++..+.....      
T Consensus       380 l~~l~~~--~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~------  451 (529)
T d1jdha_         380 IRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH------  451 (529)
T ss_dssp             HHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHH------
T ss_pred             Hhhcchh--hhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHH------
Confidence            9999874  355677888999999999986543                      2455566666666643221      


Q ss_pred             CCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Q 012897          375 TATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLE  421 (454)
Q Consensus       375 ~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  421 (454)
                              .+..+.+.|+++.|.+++.+++++++..|...+..+...
T Consensus       452 --------~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~  490 (529)
T d1jdha_         452 --------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD  490 (529)
T ss_dssp             --------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             --------HHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Confidence                    356778899999999999999999999999999887644

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=7.1e-27  Score=221.80  Aligned_cols=367  Identities=18%  Similarity=0.182  Sum_probs=278.6

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 012897           39 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD  118 (454)
Q Consensus        39 ~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  118 (454)
                      ..+|.|+++|++++ ++++..|+++|+++|.++++.+..+.+.|+++.|+++|++++++++..++++|.+|+.+++..+.
T Consensus         2 ~~ip~lv~~L~~~~-~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           2 LTIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CCHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CCHHHHHHHhCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            46899999999999 99999999999999998999999999999999999999999999999999999999988888999


Q ss_pred             HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhh----------------cCCChhH
Q 012897          119 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV----------------HSNDEEV  182 (454)
Q Consensus       119 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll----------------~~~~~~v  182 (454)
                      .+.+.|+++.++.++....++.++..+++++.+++.......... ...++.++..+                ...++.+
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v  159 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI-ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHH-HHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHH-hcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence            999999999999999777888999999999999998754333333 33344333332                3457889


Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC------CCcchhhHHHHHhH----------------------
Q 012897          183 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP------SPSVLIPALRTVGN----------------------  234 (454)
Q Consensus       183 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~------~~~v~~~a~~~L~~----------------------  234 (454)
                      +..+++++.+++...+.........++++.++.++.+.      .......+...+..                      
T Consensus       160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  239 (457)
T d1xm9a1         160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhh
Confidence            99999999999877665544444557778887776421      11111111111100                      


Q ss_pred             ----------------------------hhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCH---
Q 012897          235 ----------------------------IVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNR---  283 (454)
Q Consensus       235 ----------------------------l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~---  283 (454)
                                                  ...........+...++++.++.++.+..++.++..+.+++.+++....   
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~  319 (457)
T d1xm9a1         240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccch
Confidence                                        0011112233344456677788888666578889999999999986422   


Q ss_pred             -H-HHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCC------CCHHHHHH
Q 012897          284 -D-QIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC------PDPRIVTV  355 (454)
Q Consensus       284 -~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~------~~~~v~~~  355 (454)
                       . ....+.+.++++.|++++.+++++++..+++++.+++...  +....+ ..++++.++.++..      .+++++..
T Consensus       320 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~--~~~~~i-~~~~i~~li~~L~~~~~~~~~~~~v~~~  396 (457)
T d1xm9a1         320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVM-GNQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHH-HHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhCh--hHHHHH-HHhhHHHHHHHHhccccCcCCcHHHHHH
Confidence             1 1223446899999999999999999999999999998843  333443 44678899988864      23578999


Q ss_pred             HHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhc-CCCHHHHHHHHHHHHHhcCcCC
Q 012897          356 CLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS-HDNNEIYEKAVKILETYWLEED  423 (454)
Q Consensus       356 al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~-~~~~~v~~~a~~~l~~~~~~~~  423 (454)
                      ++.+|.++......             .+..+.+.|+++.|.++.. ++++.+++.|..+|.++|...+
T Consensus       397 a~~~L~~l~~~~~~-------------~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~  452 (457)
T d1xm9a1         397 ACYTVRNLMASQPQ-------------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHHHHHHHTTCTH-------------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHHHHHHHhcCCHH-------------HHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHh
Confidence            99999999854332             4667888999999999875 4678999999999999997665

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.8e-23  Score=197.98  Aligned_cols=358  Identities=16%  Similarity=0.168  Sum_probs=261.9

Q ss_pred             CcccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897            1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID   80 (454)
Q Consensus         1 lv~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (454)
                      +|+.|+++||++|..|+++|.+++... ++....+.+.|++|.|+++|++++ ++++..|+++|.+++..+++.+..+.+
T Consensus         7 lv~~L~~~~~~~~~~a~~~l~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~~~i~~   84 (457)
T d1xm9a1           7 AVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKLETRR   84 (457)
T ss_dssp             HHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCcHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            467899999999999999999999765 678999999999999999999999 999999999999999888999999999


Q ss_pred             CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc---------------hhhhhhHHHH
Q 012897           81 HGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN---------------ERAKLSMLRN  144 (454)
Q Consensus        81 ~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---------------~~~~~~~~~~  144 (454)
                      .|+++.++.++.+ .++.++..+++++.+++..... +...... +++.++..+.               ...+..++..
T Consensus        85 ~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  162 (457)
T d1xm9a1          85 QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL-KEELIAD-ALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN  162 (457)
T ss_dssp             TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSST-HHHHHHH-HHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred             CCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhh-HHHHHhc-ccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHH
Confidence            9999999999875 6789999999999999976543 3333332 2344443331               2336788999


Q ss_pred             HHHHHHhhcCCCCCCChh-hhhchHHHHHHhhcCC------ChhHHHHHHHHHHHhccC---------------------
Q 012897          145 ATWTLSNFCRGKPQPPFD-QVRPALPALAQLVHSN------DEEVLTDACWALSYLSDG---------------------  196 (454)
Q Consensus       145 a~~~L~~l~~~~~~~~~~-~~~~~l~~l~~ll~~~------~~~v~~~a~~~L~~l~~~---------------------  196 (454)
                      +++++..++......... ...++++.++.++.+.      .......+...+.+....                     
T Consensus       163 a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (457)
T d1xm9a1         163 ATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT  242 (457)
T ss_dssp             HHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----
T ss_pred             HHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhh
Confidence            999999998775332222 2356778888777532      111122222222111100                     


Q ss_pred             -----------------------------ChHHHHHHHHhCcHHHHHHhcCC-CCCcchhhHHHHHhHhhccCcc-----
Q 012897          197 -----------------------------TNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGDDF-----  241 (454)
Q Consensus       197 -----------------------------~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~-----  241 (454)
                                                   .......+...++++.++.++.. .++.++..+.+++.+++.....     
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  322 (457)
T d1xm9a1         243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGM  322 (457)
T ss_dssp             -----------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHH
T ss_pred             HHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHH
Confidence                                         00000111122345555555533 4566778888888888865442     


Q ss_pred             chhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhh------cchhhHHHHHH
Q 012897          242 QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN------AEFDIKKEAAW  315 (454)
Q Consensus       242 ~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~a~~  315 (454)
                      ....+.+.++++.++.++.++ ++.++..+++++++++.. +.....+. .++++.++.++..      .+.+++..++.
T Consensus       323 ~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~l~~La~~-~~~~~~i~-~~~i~~li~~L~~~~~~~~~~~~v~~~a~~  399 (457)
T d1xm9a1         323 SQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH-PLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACY  399 (457)
T ss_dssp             HHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS-GGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHhhhcCc-cHHHHHHHHHHHHHHhhC-hhHHHHHH-HhhHHHHHHHHhccccCcCCcHHHHHHHHH
Confidence            233445679999999999999 999999999999999875 33343443 4689999998864      24679999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCC-CHHHHHHHHHHHHHHHHh
Q 012897          316 AISNATSGGTHEQIKYLVREGCIKPLCDLFVCP-DPRIVTVCLEGLENILKV  366 (454)
Q Consensus       316 aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~-~~~v~~~al~~L~~l~~~  366 (454)
                      +|.+++.. +++....+.+.|+++.|+.++.+. ++.++..|..+|.+++..
T Consensus       400 ~L~~l~~~-~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~  450 (457)
T d1xm9a1         400 TVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS  450 (457)
T ss_dssp             HHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcC
Confidence            99999876 446677788889999999998764 678999999999999643

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1e-19  Score=159.31  Aligned_cols=193  Identities=17%  Similarity=0.157  Sum_probs=172.8

Q ss_pred             hhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHH
Q 012897           54 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQ  132 (454)
Q Consensus        54 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~  132 (454)
                      .+.+..|+.+|.+++. +.+++..+...|+++.++. ++.++++++|..|+++|++++.+++..+..+.+.|+++.++.+
T Consensus        31 ~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l  109 (264)
T d1xqra1          31 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  109 (264)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            6789999999999997 7788888999999999886 6788999999999999999999999999999999999999999


Q ss_pred             hchhhhhhHHHHHHHHHHhhcCCCCC-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 012897          133 LNERAKLSMLRNATWTLSNFCRGKPQ-PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP  211 (454)
Q Consensus       133 l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  211 (454)
                      +..+.++.++..++++|.+++.+.+. .......++++.++.++.++++.++..++++|.+++...+.....+.+.|+++
T Consensus       110 L~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~  189 (264)
T d1xqra1         110 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  189 (264)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             hhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHH
Confidence            97677889999999999999988633 33445688999999999999999999999999999988888888899999999


Q ss_pred             HHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhh
Q 012897          212 RLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCII  247 (454)
Q Consensus       212 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  247 (454)
                      .|+.++.++++.++..++++|++++..++.......
T Consensus       190 ~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~  225 (264)
T d1xqra1         190 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR  225 (264)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            999999999999999999999999987765554444

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.1e-18  Score=169.11  Aligned_cols=372  Identities=12%  Similarity=0.125  Sum_probs=265.6

Q ss_pred             ccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCh
Q 012897            5 VWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAV   84 (454)
Q Consensus         5 L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i   84 (454)
                      ++++++.+|..|+.++..++.....    ......+++.+..++++++ +.+|..++.+|++++..   .........++
T Consensus       212 ~~d~~~~vr~~a~~~l~~i~~~~~~----~~~~~~i~~~l~~~~~D~~-~~Vr~~~~~~l~~l~~~---~~~~~~~~~l~  283 (588)
T d1b3ua_         212 ASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKA---VGPEITKTDLV  283 (588)
T ss_dssp             HTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHH---HCHHHHHHTHH
T ss_pred             hcCCchhhHHHHHHHHHHhhccCCH----HHHHHHHHHHHHHhccccc-HHHHHHHHHhHHHHHHH---hhhhhhhhhhh
Confidence            4555666666666666666544211    1122346777888887777 78888888888888752   11223334678


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhh
Q 012897           85 PIFVKLLASPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ  163 (454)
Q Consensus        85 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  163 (454)
                      +.+..++.++++++|..++..+..++..- ........-...++.+...+ .+.+..++..++.++..++..-  .....
T Consensus       284 ~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~-~d~~~~vr~~~~~~l~~~~~~~--~~~~~  360 (588)
T d1b3ua_         284 PAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPIL--GKDNT  360 (588)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHH--CHHHH
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhh-cCCChHHHHHHHHHHhhhhhcc--chhHH
Confidence            88999999999999999999998887432 22222222234566666666 6678889998888887776431  12233


Q ss_pred             hhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccch
Q 012897          164 VRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQT  243 (454)
Q Consensus       164 ~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  243 (454)
                      ...++|.+..++.+++++++..++.++..+......  . .....+++.+...+.+.++.+|..++.+++.++....   
T Consensus       361 ~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~--~-~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~---  434 (588)
T d1b3ua_         361 IEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--R-QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLG---  434 (588)
T ss_dssp             HHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--H-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcch--h-hhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcC---
Confidence            456789999999999999999998888776643221  1 1223577888899999999999999999999875321   


Q ss_pred             hhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcC-CHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897          244 QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS  322 (454)
Q Consensus       244 ~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  322 (454)
                      ...+...+.+.+..++.++ ...+|..|+++++.++.. .++    .....+++.+.+++.++++.+|..++.++..+..
T Consensus       435 ~~~~~~~l~~~l~~~l~D~-~~~VR~~A~~~L~~l~~~~~~~----~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~  509 (588)
T d1b3ua_         435 VEFFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE  509 (588)
T ss_dssp             GGGCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH----HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHhCcH----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            1223345667888888888 899999999999999862 222    1234578999999999999999999999998866


Q ss_pred             CCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcC
Q 012897          323 GGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH  402 (454)
Q Consensus       323 ~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~  402 (454)
                      ....+    .....+++.|..+++++.+.||..++++|..+....+...           +.     ....+.+++++++
T Consensus       510 ~~~~~----~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~-----------~~-----~~i~~~l~~L~~D  569 (588)
T d1b3ua_         510 VCGQD----ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST-----------LQ-----SEVKPILEKLTQD  569 (588)
T ss_dssp             HHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHH-----------HH-----HHHHHHHHHHTTC
T ss_pred             HcChH----HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHh-----------HH-----HHHHHHHHHHcCC
Confidence            32222    2345689999999999999999999999999976543311           12     2235778899999


Q ss_pred             CCHHHHHHHHHHHHHh
Q 012897          403 DNNEIYEKAVKILETY  418 (454)
Q Consensus       403 ~~~~v~~~a~~~l~~~  418 (454)
                      ++.+|+..|.+.++.+
T Consensus       570 ~d~dVr~~A~~al~~l  585 (588)
T d1b3ua_         570 QDVDVKYFAQEALTVL  585 (588)
T ss_dssp             SSHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999998865

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.8e-18  Score=150.02  Aligned_cols=191  Identities=17%  Similarity=0.171  Sum_probs=168.3

Q ss_pred             CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH-hcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHH
Q 012897          177 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYL  255 (454)
Q Consensus       177 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L  255 (454)
                      ..+.+.+..|+.+|.+++... +....+...|+++.++. ++.+++++++..|+++|++++.+++.....+.+.|+++.|
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~~-d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L  106 (264)
T d1xqra1          28 AADQQEREGALELLADLCENM-DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            346778899999999999654 45567888899998875 6788999999999999999999888777788899999999


Q ss_pred             HHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHc
Q 012897          256 LGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVRE  335 (454)
Q Consensus       256 ~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~  335 (454)
                      +.++.+..++.++..++++|++++.+++.....+...|+++.|+.++.++++.++..++++|.+++.. .+.....+.+.
T Consensus       107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~  185 (264)
T d1xqra1         107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSM  185 (264)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHT
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhc-cHHHHHHHHHh
Confidence            99997654889999999999999999898888888999999999999999999999999999999875 34566777889


Q ss_pred             CCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhh
Q 012897          336 GCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEA  369 (454)
Q Consensus       336 ~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~  369 (454)
                      |+++.|+.++++++++++..++++|.++....+.
T Consensus       186 ~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~  219 (264)
T d1xqra1         186 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQ  219 (264)
T ss_dssp             THHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHH
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHH
Confidence            9999999999999999999999999999865443

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3e-17  Score=160.83  Aligned_cols=376  Identities=12%  Similarity=0.108  Sum_probs=278.7

Q ss_pred             ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 012897            3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG   82 (454)
Q Consensus         3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g   82 (454)
                      +.++++++.+|..|+.++..++....    .......+++.+..++++++ +.+|..|+.++..++...+..   .....
T Consensus       171 ~l~~D~~~~VR~~a~~~l~~~~~~~~----~~~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~i~~~~~~~---~~~~~  242 (588)
T d1b3ua_         171 NLCSDDTPMVRRAAASKLGEFAKVLE----LDNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE---DLEAL  242 (588)
T ss_dssp             HHHTCSCHHHHHHHHHHHHHHHHTSC----HHHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH---HHHHH
T ss_pred             HHhccCCHHHHHHHHHHHHHHHHHhc----HHHHHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHhhccCCHH---HHHHH
Confidence            34578899999999999999987642    12334567888899998888 899999999999987622221   11223


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC--
Q 012897           83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP--  160 (454)
Q Consensus        83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~--  160 (454)
                      +++.+..++.++++.+|..++.++++++...   .........++.+..++ .+.+.+++..++..+..++.......  
T Consensus       243 i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~ll-~d~~~~vr~~a~~~l~~~~~~l~~~~~~  318 (588)
T d1b3ua_         243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAV---GPEITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENLSADCRE  318 (588)
T ss_dssp             THHHHHHHHTCSSHHHHHHHHHTHHHHHHHH---CHHHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHhHHHHHHHh---hhhhhhhhhhHHHHHHH-hccchHHHHHHHHHHHHHHHHHhhhhhh
Confidence            6889999999999999999999999987421   12223344577777777 67788999999999999987643222  


Q ss_pred             hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897          161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD  240 (454)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  240 (454)
                      ......++|.+...+.+.++.++..++.++..++..-..  . .....+++.+...+.++++.++..++.++..+.....
T Consensus       319 ~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~--~-~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~  395 (588)
T d1b3ua_         319 NVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--D-NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG  395 (588)
T ss_dssp             HHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--H-HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC
T ss_pred             hhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccch--h-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcc
Confidence            223467889999999999999999998888777632111  1 1223578889999999999999999988887765322


Q ss_pred             cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcC-CHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHH
Q 012897          241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN  319 (454)
Q Consensus       241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~  319 (454)
                      .  . -+...+++.+..++.+. ++.+|..++.++..++.. ..+.    ....+.+.+..++.++...+|..|+++++.
T Consensus       396 ~--~-~~~~~ll~~l~~~~~d~-~~~~r~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~  467 (588)
T d1b3ua_         396 I--R-QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVDHVYAIREAATSNLKK  467 (588)
T ss_dssp             H--H-HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGGG----CCHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred             h--h-hhhhHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHcChHh----HHHHHHHHHHhhccCCchhHHHHHHHHHHH
Confidence            1  1 12235678888889988 999999999999988741 1111    112345667778888899999999999999


Q ss_pred             hcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHH
Q 012897          320 ATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENL  399 (454)
Q Consensus       320 l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l  399 (454)
                      ++....++.    ....+++.+..++.++++..|..++.++..+.......                ......++.+.++
T Consensus       468 l~~~~~~~~----~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~----------------~~~~~ilp~ll~~  527 (588)
T d1b3ua_         468 LVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----------------ITTKHMLPTVLRM  527 (588)
T ss_dssp             HHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----------------HHHHHTHHHHHHG
T ss_pred             HHHHhCcHH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChH----------------HHHHHHHHHHHHH
Confidence            976433332    23347889999999999999999999999988754322                1224467888899


Q ss_pred             hcCCCHHHHHHHHHHHHHhcCc
Q 012897          400 QSHDNNEIYEKAVKILETYWLE  421 (454)
Q Consensus       400 ~~~~~~~v~~~a~~~l~~~~~~  421 (454)
                      .+++.+.|+..+.+.+..+...
T Consensus       528 ~~D~v~nVR~~a~~~l~~i~~~  549 (588)
T d1b3ua_         528 AGDPVANVRFNVAKSLQKIGPI  549 (588)
T ss_dssp             GGCSCHHHHHHHHHHHHHHGGG
T ss_pred             cCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999988887653

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.1e-13  Score=144.26  Aligned_cols=404  Identities=12%  Similarity=0.096  Sum_probs=262.7

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      ++.+++.|+++|..|+..|.+.+....... +.-....+++.|+++|.+++ ++||..|+.+|+.++...++...    .
T Consensus         9 l~k~~~~D~d~R~ma~~dl~~~l~~~~~~~-~~~~~~~i~~~ll~~L~D~~-~~Vq~~A~k~l~~l~~~~~~~~~----~   82 (1207)
T d1u6gc_           9 LEKMTSSDKDFRFMATNDLMTELQKDSIKL-DDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEYQV----E   82 (1207)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHTSSSCCSC-CTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHHHH----H
T ss_pred             HHhcCCCCHhHHHHHHHHHHHHHhhccccc-ChHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCcHhhH----H
Confidence            467899999999999999999876542211 11112347889999999999 99999999999999875443221    2


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh------hHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCC
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR------CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  155 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~------~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  155 (454)
                      .+++.|+..+.+++...+..+..+|..+...-+.      ....+ ....++.+...+....+..++..++.++..+...
T Consensus        83 ~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~  161 (1207)
T d1u6gc_          83 TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR  161 (1207)
T ss_dssp             HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Confidence            3578888888888888888888887776532111      11111 1112444455554556778899999999988776


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc-CCCCCcchhhHHHHHhH
Q 012897          156 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGN  234 (454)
Q Consensus       156 ~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~  234 (454)
                      .+..-......+++.+...+.++++.++..++.+|+.++...+..   .+ ..+++.++..+ .+.+...+..++.+++.
T Consensus       162 ~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~---~~-~~~~~~ll~~l~~~~~~~~~~~~~~~l~~  237 (1207)
T d1u6gc_         162 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYIQCIAA  237 (1207)
T ss_dssp             TCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred             hhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH---HH-HHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence            544444445678888999999999999999999999998664432   11 24566666555 45667788889999999


Q ss_pred             hhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHH----HHHHHHh--CC---------------
Q 012897          235 IVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD----QIQAVID--AG---------------  293 (454)
Q Consensus       235 l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~----~~~~l~~--~~---------------  293 (454)
                      ++...+......+ ..+++.++..+.+. +..+|..+..++..++...+.    ....++.  ..               
T Consensus       238 l~~~~~~~~~~~l-~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~  315 (1207)
T d1u6gc_         238 ISRQAGHRIGEYL-EKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDE  315 (1207)
T ss_dssp             HHHHSSGGGTTSC-TTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC----------
T ss_pred             HHHHcchhhHHHH-HHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHH
Confidence            9876554332222 36788999999988 889999999999888753221    1111110  00               


Q ss_pred             ---------------ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHH
Q 012897          294 ---------------LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE  358 (454)
Q Consensus       294 ---------------~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~  358 (454)
                                     ..+.......+..+.+|..++.+|..++...... ... .-..+++.++..+.+.++.++..++.
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~-l~~-~~~~~~~~L~~~l~d~~~~vr~~~~~  393 (1207)
T d1u6gc_         316 DENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEM-LPE-FYKTVSPALISRFKEREENVKADVFH  393 (1207)
T ss_dssp             --------------------------CTTHHHHHHHHHHHHHHTTCCTT-HHH-HHTTTHHHHHSTTSCSSSHHHHHHHH
T ss_pred             HHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHH-HHH-HHHHHHHHHHHHhcCCchHHHHHHHH
Confidence                           0000111112235688999999999998764432 222 23468899999999999999999999


Q ss_pred             HHHHHHHhhhhhhhccCCcc---cccHHHHHHHH--hccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 012897          359 GLENILKVGEAEKNMGTATA---DVNQYAQLVEE--AEGLEKIENLQSHDNNEIYEKAVKILETYWL  420 (454)
Q Consensus       359 ~L~~l~~~~~~~~~~~~~~~---~~~~~~~~l~~--~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  420 (454)
                      ++..+++.............   ..+.....+.+  ...++.+.+...+.+..++..+..++..+..
T Consensus       394 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~  460 (1207)
T d1u6gc_         394 AYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVN  460 (1207)
T ss_dssp             HHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence            99988765332110000000   00001111111  2345667777788899999888888777653

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=8.6e-13  Score=135.05  Aligned_cols=384  Identities=12%  Similarity=0.105  Sum_probs=237.8

Q ss_pred             HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHH
Q 012897           10 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK   89 (454)
Q Consensus        10 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~   89 (454)
                      ..++..|..+|..++...+......     +++.+.+.+.+++ +..|+.|+.+|+.++.+..+.....+ ..+++.++.
T Consensus       371 ~~~r~~a~~~L~~l~~~~~~~il~~-----~l~~l~~~l~s~~-~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~  443 (888)
T d1qbkb_         371 WNLRKCSAAALDVLANVYRDELLPH-----ILPLLKELLFHHE-WVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQ  443 (888)
T ss_dssp             CSSHHHHHHHSTTTTTTCCSSSHHH-----HHHHHHHTTTSSS-HHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHH
T ss_pred             hhHHHHHHHHHhhHhhhhHHHHHHH-----HHHHHHHhhccch-hHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHH
Confidence            3467777777776665542322222     3566777788888 89999999999999875443322222 246788889


Q ss_pred             hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHH
Q 012897           90 LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP  169 (454)
Q Consensus        90 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~  169 (454)
                      .++++++.+|..++|+|+.++.........-.-...++.++..+ .+.++.++..++++|.+++......-......+++
T Consensus       444 ~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l-~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~  522 (888)
T d1qbkb_         444 CLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYLAYILD  522 (888)
T ss_dssp             HTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHH-SSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHH
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            99999999999999999998742211111112234567777777 66778999999999999987654444556678888


Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHhccCChHH--HHHHHHhCcHHHHHHhcCC--CCCcchhhHHHHHhHhhccCccchhh
Q 012897          170 ALAQLVHSNDEEVLTDACWALSYLSDGTNDK--IQAVIEAGVCPRLVELLGH--PSPSVLIPALRTVGNIVTGDDFQTQC  245 (454)
Q Consensus       170 ~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~  245 (454)
                      .+...+...+...+..+..++..++......  .....+ .+++.+......  .+.......+.+++.++.........
T Consensus       523 ~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~  601 (888)
T d1qbkb_         523 TLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQ-MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLP  601 (888)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHH-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhh
Confidence            9999998888877777777777665321100  011111 344445544432  23334555677777766433222111


Q ss_pred             hhccCChHHHHHhh------------c----CCcchhHHHHHHHHHHHHhcCCHHHHHHHH-hCCChHHHHHHhhhcchh
Q 012897          246 IITYGALPYLLGLL------------T----HSHKKSIKKEACWTISNITAGNRDQIQAVI-DAGLVGPLVNLLQNAEFD  308 (454)
Q Consensus       246 ~~~~~~l~~L~~~L------------~----~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~  308 (454)
                      ... ...+.++.++            .    ...+..+...+..+++.++.........++ ...+++.+...+++.++.
T Consensus       602 ~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~  680 (888)
T d1qbkb_         602 YCE-PVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPE  680 (888)
T ss_dssp             HHH-HHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHH
T ss_pred             hHH-HHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChH
Confidence            111 1111111111            1    111445566666677766642111222333 456788888899999999


Q ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHH
Q 012897          309 IKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVE  388 (454)
Q Consensus       309 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~  388 (454)
                      +|..|..+++.++........+++-  .+++.+...++++.+.++..++++++.+.......-         ..|...  
T Consensus       681 vr~~a~~llgdl~~~~~~~~~~~l~--~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~---------~py~~~--  747 (888)
T d1qbkb_         681 VRQSSFALLGDLTKACFQHVKPCIA--DFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEM---------QPYIPM--  747 (888)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTGGGHH--HHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGG---------GGGSHH--
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHh---------hhhHHH--
Confidence            9999999999887754433333322  267788888888889999999999999987654321         112222  


Q ss_pred             HhccHHHHHHHhcCC--CHHHHHHHHHHHHHhc
Q 012897          389 EAEGLEKIENLQSHD--NNEIYEKAVKILETYW  419 (454)
Q Consensus       389 ~~g~~~~l~~l~~~~--~~~v~~~a~~~l~~~~  419 (454)
                         .++.|..+.+++  +..+.+.+...+.++.
T Consensus       748 ---il~~L~~il~~~~~~~~v~~n~~~~lgrl~  777 (888)
T d1qbkb_         748 ---VLHQLVEIINRPNTPKTLLENTAITIGRLG  777 (888)
T ss_dssp             ---HHHHHHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence               235555555443  4557777777766543

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=8.5e-13  Score=135.11  Aligned_cols=356  Identities=11%  Similarity=0.117  Sum_probs=221.4

Q ss_pred             ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 012897            3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG   82 (454)
Q Consensus         3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g   82 (454)
                      +.++++++..|..|+.+|..++.+. .......+ ..+++.++..+++++ +.+|..|+|+|+.++.........-.-..
T Consensus       402 ~~l~s~~~~~reaa~~alg~i~eg~-~~~~~~~l-~~li~~l~~~l~d~~-~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~  478 (888)
T d1qbkb_         402 ELLFHHEWVVKESGILVLGAIAEGC-MQGMIPYL-PELIPHLIQCLSDKK-ALVRSITCWTLSRYAHWVVSQPPDTYLKP  478 (888)
T ss_dssp             HTTTSSSHHHHHHHHHHHHHHTTTS-HHHHTTTH-HHHHHHHHHHTTSSC-HHHHHHHHHHHHHTHHHHHSSCHHHHTTT
T ss_pred             HhhccchhHHHHHHHHHhhhhhhhH-HHHhcccc-hhhhHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence            4678899999999999999887653 11111111 235788889999988 99999999999998752211111112346


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC--CCC
Q 012897           83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSP-RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK--PQP  159 (454)
Q Consensus        83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~  159 (454)
                      +++.++..+.++++.++..|+++|.+++.... .....+  ...++.++..+ ...+...+..+..++..++...  ...
T Consensus       479 ~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~~l~~~l-~~~~~~~~~~~~~al~~l~~~~~~~~~  555 (888)
T d1qbkb_         479 LMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAF-SKYQHKNLLILYDAIGTLADSVGHHLN  555 (888)
T ss_dssp             HHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHHGGGGC
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHhhhcccc
Confidence            78999999999999999999999999873211 111111  11345566666 3333444555555555554321  112


Q ss_pred             ChhhhhchHHHHHHhhcC--CChhHHHHHHHHHHHhccCC----hHHHHHHHHhCcHHHHHH--------hc-----CCC
Q 012897          160 PFDQVRPALPALAQLVHS--NDEEVLTDACWALSYLSDGT----NDKIQAVIEAGVCPRLVE--------LL-----GHP  220 (454)
Q Consensus       160 ~~~~~~~~l~~l~~ll~~--~~~~v~~~a~~~L~~l~~~~----~~~~~~~~~~~~i~~L~~--------ll-----~~~  220 (454)
                      .......+++.+......  .+.......+.++..++...    ......+.. .++..+..        ..     ...
T Consensus       556 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~  634 (888)
T d1qbkb_         556 KPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ-RCVNLVQKTLAQAMLNNAQPDQYEAP  634 (888)
T ss_dssp             SHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHCTTTSCCC
T ss_pred             chHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHhcccccccch
Confidence            223344556666655432  22333445556665554221    111111111 11111111        11     123


Q ss_pred             CCcchhhHHHHHhHhhccCccchhhhh-ccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHH
Q 012897          221 SPSVLIPALRTVGNIVTGDDFQTQCII-TYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLV  299 (454)
Q Consensus       221 ~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~  299 (454)
                      +..+...++.+++.++.........++ ...+++.+...+++. ++.+|..|..+++.++..........++ .+++.+.
T Consensus       635 ~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~~~~l~  712 (888)
T d1qbkb_         635 DKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK-MPEVRQSSFALLGDLTKACFQHVKPCIA-DFMPILG  712 (888)
T ss_dssp             CTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHH
Confidence            445666777788887764443333333 456788889999888 9999999999999988754443333332 3677788


Q ss_pred             HHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCC--HHHHHHHHHHHHHHHHhhhh
Q 012897          300 NLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPD--PRIVTVCLEGLENILKVGEA  369 (454)
Q Consensus       300 ~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~--~~v~~~al~~L~~l~~~~~~  369 (454)
                      ..+.++...++.+|+|+++.++.....+..+++.  .+++.|+..+++++  ..++..++.+|+++....+.
T Consensus       713 ~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~--~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~  782 (888)
T d1qbkb_         713 TNLNPEFISVCNNATWAIGEISIQMGIEMQPYIP--MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQ  782 (888)
T ss_dssp             HTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSH--HHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHH
Confidence            8888888899999999999998765444433332  36788888887654  45889999999999876553

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=5.2e-11  Score=103.70  Aligned_cols=257  Identities=14%  Similarity=0.129  Sum_probs=193.0

Q ss_pred             HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh
Q 012897           37 QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC  116 (454)
Q Consensus        37 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  116 (454)
                      +....+.|.++|++++ +.+|..|+.+|+.+..  +         ..++.|+.+++++++.+|..|+.+|+.+...... 
T Consensus        17 ~~~~~~~L~~~L~d~~-~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-   83 (276)
T d1oyza_          17 KKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-   83 (276)
T ss_dssp             HTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-
T ss_pred             ccCCHHHHHHHhcCCC-HHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-
Confidence            3456778999999999 9999999999998764  1         3579999999999999999999999998643322 


Q ss_pred             HHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 012897          117 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG  196 (454)
Q Consensus       117 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~  196 (454)
                      ...     .++.+...+..++++.++..++.+|..++...+    ......++.+...+.+.++.++..++.++..+.. 
T Consensus        84 ~~~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~-  153 (276)
T d1oyza_          84 EDN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-  153 (276)
T ss_dssp             HHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred             ccc-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch-
Confidence            122     134455555578899999999999999876531    2234567788888888999999998888876532 


Q ss_pred             ChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHH
Q 012897          197 TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS  276 (454)
Q Consensus       197 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~  276 (454)
                                ...++.+..++.+.++.++..+...+........         ...+.+...+.+. +..++..+.++++
T Consensus       154 ----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~al~  213 (276)
T d1oyza_         154 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIGLS  213 (276)
T ss_dssp             -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHhcccccchhhhhHHHHHHhhhcccc---------ccchhhhhhhhhh-hhhhhhhhccccc
Confidence                      2556778888888888888888888877665432         2345577777888 8899999999988


Q ss_pred             HHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCC-CCHHHHHH
Q 012897          277 NITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC-PDPRIVTV  355 (454)
Q Consensus       277 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~  355 (454)
                      .+..           ...++.|++.+.  ++.++..++++|+.+..   +         ..++.|..++.. ++.+++..
T Consensus       214 ~~~~-----------~~~~~~L~~~l~--d~~vr~~a~~aL~~ig~---~---------~~~~~L~~~l~~~~d~~vr~~  268 (276)
T d1oyza_         214 YRKD-----------KRVLSVLCDELK--KNTVYDDIIEAAGELGD---K---------TLLPVLDTMLYKFDDNEIITS  268 (276)
T ss_dssp             HTTC-----------GGGHHHHHHHHT--SSSCCHHHHHHHHHHCC---G---------GGHHHHHHHHTTSSCCHHHHH
T ss_pred             hhhh-----------hhhHHHHHHHhC--ChHHHHHHHHHHHHcCC---H---------HHHHHHHHHHccCCCHHHHHH
Confidence            7642           246778888776  45689999999998853   1         357777777765 57789998


Q ss_pred             HHHHHH
Q 012897          356 CLEGLE  361 (454)
Q Consensus       356 al~~L~  361 (454)
                      ++..|.
T Consensus       269 A~~~L~  274 (276)
T d1oyza_         269 AIDKLK  274 (276)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            888764

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=3.8e-11  Score=104.58  Aligned_cols=249  Identities=15%  Similarity=0.117  Sum_probs=184.2

Q ss_pred             CcccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897            1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID   80 (454)
Q Consensus         1 lv~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (454)
                      |+++|+++|+.+|..|+..|..+...            ..++.|++++++++ +.+|..|+.+|+.+.... ......  
T Consensus        24 L~~~L~d~~~~vR~~A~~~L~~~~~~------------~~~~~l~~~l~d~~-~~vr~~a~~aL~~l~~~~-~~~~~~--   87 (276)
T d1oyza_          24 LFRLLDDHNSLKRISSARVLQLRGGQ------------DAVRLAIEFCSDKN-YIRRDIGAFILGQIKICK-KCEDNV--   87 (276)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHCCH------------HHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCT-TTHHHH--
T ss_pred             HHHHhcCCCHHHHHHHHHHHHhhCCH------------hHHHHHHHHHcCCC-HHHHHHHHHHHHHhcccc-ccccch--
Confidence            35688999999999999999876421            24789999999999 999999999999987622 221111  


Q ss_pred             CCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCC
Q 012897           81 HGAVPIFVK-LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP  159 (454)
Q Consensus        81 ~g~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  159 (454)
                         ++.+.. +++++++.++..++.+|++++...+.....     .++.+...+ .+.+..++..++.++..+..     
T Consensus        88 ---~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~-----~~~~l~~~~-~d~~~~vr~~a~~~l~~~~~-----  153 (276)
T d1oyza_          88 ---FNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPK-----IVEQSQITA-FDKSTNVRRATAFAISVIND-----  153 (276)
T ss_dssp             ---HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHHT-TCSCHHHHHHHHHHHHTC-------
T ss_pred             ---HHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhHH-----HHHHHHHHh-cCcchHHHHHHHHHHhhcch-----
Confidence               233333 567799999999999999998554433222     245566666 66778899988888877543     


Q ss_pred             ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccC
Q 012897          160 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD  239 (454)
Q Consensus       160 ~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  239 (454)
                           ...++.+..++...+..++..+..++.........         ..+.+...+.+.+..++..+..+++.+..  
T Consensus       154 -----~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~al~~~~~--  217 (276)
T d1oyza_         154 -----KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGLSYRKD--  217 (276)
T ss_dssp             ------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHHHHTTC--
T ss_pred             -----HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhhhhhhhhhhccccchhhh--
Confidence                 24567888889999999999888888877655432         23456677788888899999888876532  


Q ss_pred             ccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc-chhhHHHHHHHHH
Q 012897          240 DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAIS  318 (454)
Q Consensus       240 ~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~  318 (454)
                               ...++.|+..+.++   .+|..++++|+.+..           .+.++.|..++... +.+++..|+.+|.
T Consensus       218 ---------~~~~~~L~~~l~d~---~vr~~a~~aL~~ig~-----------~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         218 ---------KRVLSVLCDELKKN---TVYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             ---------GGGHHHHHHHHTSS---SCCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             ---------hhhHHHHHHHhCCh---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence                     24577888888754   589999999998742           34788888888764 7889999988874

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.5e-10  Score=108.22  Aligned_cols=387  Identities=13%  Similarity=0.069  Sum_probs=244.3

Q ss_pred             cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC-ChhHHHHHHHHHHHhcCCCchhhH-HH-
Q 012897            2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTK-VV-   78 (454)
Q Consensus         2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~-~~-   78 (454)
                      ++.+.++|.++|.+|-..|..+.... .        .+.+..|...+.+.+ ...+|..|+-.|.+.......... .. 
T Consensus         6 l~~~~s~d~~~r~~A~~~L~~~~~~~-~--------~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~   76 (458)
T d1ibrb_           6 LEKTVSPDRLELEAAQKFLERAAVEN-L--------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ   76 (458)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHHHH-H--------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred             HHHHhCcCHHHHHHHHHHHHHHHhcC-c--------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHh
Confidence            34567899999999999999988652 1        123666777776543 367899998888887763322111 11 


Q ss_pred             ---------HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhch-hhhhhHHHHHHHH
Q 012897           79 ---------IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE-RAKLSMLRNATWT  148 (454)
Q Consensus        79 ---------~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~a~~~  148 (454)
                               ....+.+.+++.+.++++..+ .++.+++.++......   -.-.+.++.+++.+.. ..+...+..++.+
T Consensus        77 ~~~~~l~~~~~~~i~~~ll~~~~~~~~~~~-~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~  152 (458)
T d1ibrb_          77 QRWLAIDANARREVKNYVLQTLGTETYRPS-SASQCVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKESTLEA  152 (458)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHTTCCCSSSC-SHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred             hhhccCCHHHHHHHHHHHHhccCCCcHHHH-HHHHHHHHHHHHhCCc---ccCcchhHHHHHHHHhhcchHHHHHHHHHH
Confidence                     112345566777766554333 3444554443210000   0001346667776642 3445677788888


Q ss_pred             HHhhcCCC-CCCChhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCChHHHH-HHHHhCcHHHHHHhcCCCCCcc
Q 012897          149 LSNFCRGK-PQPPFDQVRPALPALAQLVHSN--DEEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLGHPSPSV  224 (454)
Q Consensus       149 L~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~v  224 (454)
                      +..++... +.........+++.++..+.+.  +..++..++.++..+......... ......+.+.+...+.++++++
T Consensus       153 l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  232 (458)
T d1ibrb_         153 IGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRV  232 (458)
T ss_dssp             HHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHH
T ss_pred             HHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHH
Confidence            88887654 2333344566788888888754  567999999999998865443211 1222345667778888899999


Q ss_pred             hhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHH---------------
Q 012897          225 LIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAV---------------  289 (454)
Q Consensus       225 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l---------------  289 (454)
                      +..++.++..++...+......+.......+...+.+. +..++..++..+..++..........               
T Consensus       233 ~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (458)
T d1ibrb_         233 RVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSK  311 (458)
T ss_dssp             HHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCC
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHH
Confidence            99999999999876554433333334445566666777 88899999988888764211111000               


Q ss_pred             -----HhCCChHHHHHHhhh-------cchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHH
Q 012897          290 -----IDAGLVGPLVNLLQN-------AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCL  357 (454)
Q Consensus       290 -----~~~~~i~~L~~ll~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al  357 (454)
                           ....+++.+...+..       .+..++..+..++..++.....+....     +++.+.+.++++++.++..++
T Consensus       312 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-----l~~~i~~~l~s~~~~~r~aal  386 (458)
T d1ibrb_         312 FYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH-----VLPFIKEHIKNPDWRYRDAAV  386 (458)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHH-----HHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhH-----HHHHHHHHhcCCCHHHHHHHH
Confidence                 001123344444322       234688888888888876544333333     467788889999999999999


Q ss_pred             HHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 012897          358 EGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL  420 (454)
Q Consensus       358 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  420 (454)
                      .+|..+........           +...+  ...++.|....+++++.|+..|.+.+.++.+
T Consensus       387 ~~l~~i~~~~~~~~-----------~~~~l--~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         387 MAFGCILEGPEPSQ-----------LKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             HHHHHTSSSSCTTT-----------TCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHhH-----------HHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            99998875432111           00111  2345677788899999999999999988754

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=4.7e-11  Score=111.86  Aligned_cols=352  Identities=13%  Similarity=0.076  Sum_probs=217.7

Q ss_pred             CCHHHHHHHHHHHHHHhccCCCCcHHH----------HHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHH
Q 012897            8 DDSSLQLEATTQFRKLLSIERSPPIEE----------VIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV   77 (454)
Q Consensus         8 ~d~~~~~~a~~~L~~l~~~~~~~~~~~----------~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~   77 (454)
                      .++.+|..|+..|++.+..........          -....+.+.+++.+.+++ +. +..++.++..++......   
T Consensus        48 ~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~-~~-~~~~~~~~~~i~~~~~~~---  122 (458)
T d1ibrb_          48 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YR-PSSASQCVAGIACAEIPV---  122 (458)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SS-SCSHHHHHHHHHHHHGGG---
T ss_pred             CCHHHHHHHHHHHHHHhhccCchhhhHHhhhhccCCHHHHHHHHHHHHhccCCCc-HH-HHHHHHHHHHHHHHhCCc---
Confidence            357899999999988876531111111          122345556777777766 33 334555555554310000   


Q ss_pred             HHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhch-hhhhhHHHHHHHHHHhhcC
Q 012897           78 VIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE-RAKLSMLRNATWTLSNFCR  154 (454)
Q Consensus        78 ~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~a~~~L~~l~~  154 (454)
                      -.-.+.++.++..+.+  .+...+..++.++..++.........-.....++.++..+.. +.+..++..++.++..+..
T Consensus       123 ~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~  202 (458)
T d1ibrb_         123 NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE  202 (458)
T ss_dssp             TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred             ccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHH
Confidence            0113578888888865  557788889999988874322111110111235666666643 3467899999999999986


Q ss_pred             CCC--CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHH
Q 012897          155 GKP--QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV  232 (454)
Q Consensus       155 ~~~--~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L  232 (454)
                      ...  ...........+.+...+.+++++++..++.++..++...+......+.......+...+.+.++.++..++..+
T Consensus       203 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l  282 (458)
T d1ibrb_         203 FTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW  282 (458)
T ss_dssp             TTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            541  122233345677888888999999999999999998865544332222223334455556777788888898888


Q ss_pred             hHhhccCccch----------------h----hhhccCChHHHHHhhcC------CcchhHHHHHHHHHHHHhcCCHHHH
Q 012897          233 GNIVTGDDFQT----------------Q----CIITYGALPYLLGLLTH------SHKKSIKKEACWTISNITAGNRDQI  286 (454)
Q Consensus       233 ~~l~~~~~~~~----------------~----~~~~~~~l~~L~~~L~~------~~~~~v~~~a~~~L~nl~~~~~~~~  286 (454)
                      ..++.......                .    ......+.+.+...+..      ..+..++..+..++..++...++..
T Consensus       283 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~  362 (458)
T d1ibrb_         283 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI  362 (458)
T ss_dssp             HHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTH
T ss_pred             HHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhh
Confidence            88763211000                0    00001223344444422      1134588889989888876322211


Q ss_pred             HHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 012897          287 QAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV  366 (454)
Q Consensus       287 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~  366 (454)
                         . ..+++.+.+.++++++.+|..|+.+|+.++.....+.... .-..+++.|...++++++.||..|+++|+++...
T Consensus       363 ---~-~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~-~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~  437 (458)
T d1ibrb_         363 ---V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  437 (458)
T ss_dssp             ---H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             ---h-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence               1 1246677788888899999999999999987543222111 1134688899999999999999999999999876


Q ss_pred             hhh
Q 012897          367 GEA  369 (454)
Q Consensus       367 ~~~  369 (454)
                      ...
T Consensus       438 ~~~  440 (458)
T d1ibrb_         438 LPE  440 (458)
T ss_dssp             GGG
T ss_pred             hhc
Confidence            543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3.3e-11  Score=127.17  Aligned_cols=352  Identities=12%  Similarity=0.098  Sum_probs=223.2

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 012897           41 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV  120 (454)
Q Consensus        41 l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  120 (454)
                      +..|++-++++| +++|..|+.-|.+......-..+.-....+++.++++|++++++||..|+.+|+.++...++..  +
T Consensus         5 ~~~ll~k~~~~D-~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~--~   81 (1207)
T d1u6gc_           5 ISNLLEKMTSSD-KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ--V   81 (1207)
T ss_dssp             HHHHHHHTTCSS-HHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH--H
T ss_pred             HHHHHHhcCCCC-HhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhh--H
Confidence            556778889999 9999999988888664221111111112368999999999999999999999999986654321  1


Q ss_pred             HhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCC------CChhhhhchHHHHHHhhc-CCChhHHHHHHHHHHHh
Q 012897          121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ------PPFDQVRPALPALAQLVH-SNDEEVLTDACWALSYL  193 (454)
Q Consensus       121 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~------~~~~~~~~~l~~l~~ll~-~~~~~v~~~a~~~L~~l  193 (454)
                        ...++.|+..+ .+.+...+..+..+|..+...-+.      ........+++.+...+. ..+..++..++.++..+
T Consensus        82 --~~l~~~L~~~l-~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l  158 (1207)
T d1u6gc_          82 --ETIVDTLCTNM-LSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM  158 (1207)
T ss_dssp             --HHHHHHHHHHT-TCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHh-cCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence              12356666666 455667777777777766543211      111122444555555544 45778899999998887


Q ss_pred             ccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHH
Q 012897          194 SDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACW  273 (454)
Q Consensus       194 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~  273 (454)
                      ....+....... ..+++.++..+.++++.+|..|+.+|+.++......   .. ...++.++..+..+.+..++..++.
T Consensus       159 ~~~~g~~l~~~~-~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~---~~-~~~~~~ll~~l~~~~~~~~~~~~~~  233 (1207)
T d1u6gc_         159 LSRQGGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYIQ  233 (1207)
T ss_dssp             HHHTCSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred             HHHhhHhhHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH---HH-HHHHHHHHHHHccCCCHHHHHHHHH
Confidence            643322111111 246777888889999999999999999998754321   11 2456667766654436667788888


Q ss_pred             HHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhh----------
Q 012897          274 TISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCD----------  343 (454)
Q Consensus       274 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~----------  343 (454)
                      +++.++...+......+ ..+++.+...+..+++++|..++.++..++.....+...++.+  .+..+..          
T Consensus       234 ~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~--ii~~~l~~l~~dp~~~~  310 (1207)
T d1u6gc_         234 CIAAISRQAGHRIGEYL-EKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVST--IINICLKYLTYDPNYNY  310 (1207)
T ss_dssp             HHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHH--HHHHHTTCCCCC-----
T ss_pred             HHHHHHHHcchhhHHHH-HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHH--HHHHHHHHHhcCcchhh
Confidence            88888763332211111 4578889999999999999999999988876543221111110  1111111          


Q ss_pred             ---------------------------ccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHH
Q 012897          344 ---------------------------LFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKI  396 (454)
Q Consensus       344 ---------------------------~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l  396 (454)
                                                 ......+.++..++.+|..++......            ....+  ...++.+
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~------------l~~~~--~~~~~~L  376 (1207)
T d1u6gc_         311 DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEM------------LPEFY--KTVSPAL  376 (1207)
T ss_dssp             -------------------------------CTTHHHHHHHHHHHHHHTTCCTT------------HHHHH--TTTHHHH
T ss_pred             hhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHH------------HHHHH--HHHHHHH
Confidence                                       122334678889999999888653321            22222  3356777


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHhcC
Q 012897          397 ENLQSHDNNEIYEKAVKILETYWL  420 (454)
Q Consensus       397 ~~l~~~~~~~v~~~a~~~l~~~~~  420 (454)
                      .....+.++.++..+...+..++.
T Consensus       377 ~~~l~d~~~~vr~~~~~~l~~l~~  400 (1207)
T d1u6gc_         377 ISRFKEREENVKADVFHAYLSLLK  400 (1207)
T ss_dssp             HSTTSCSSSHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCchHHHHHHHHHHHHHHH
Confidence            777788889999888887777654

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.15  E-value=9.8e-09  Score=103.62  Aligned_cols=384  Identities=13%  Similarity=0.069  Sum_probs=240.2

Q ss_pred             ccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC-ChhHHHHHHHHHHHhcCCCchhhHHH-----
Q 012897            5 VWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTKVV-----   78 (454)
Q Consensus         5 L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~-----   78 (454)
                      +.|+|+.+|..|-..|.++....  .       .+.+..|.+.+.+.+ ++.+|..|+-.|.+............     
T Consensus        14 ~~s~d~~~r~~Ae~~L~~~~~~~--~-------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~~~   84 (861)
T d2bpta1          14 ILSPDQNIRLTSETQLKKLSNDN--F-------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRW   84 (861)
T ss_dssp             HHCSSHHHHHHHHHHHHHHHHHC--H-------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHHhcC--c-------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHhhh
Confidence            56889999999999999887552  1       124667888887643 36888999988888775332211110     


Q ss_pred             -------HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHH
Q 012897           79 -------IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS  150 (454)
Q Consensus        79 -------~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~  150 (454)
                             ....+-..++..+.++++.+|..+..+++.++... +..+.    .+.++.+++.+....+..++..++.++.
T Consensus        85 ~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~w----peli~~L~~~~~s~~~~~~~~~al~~l~  160 (861)
T d2bpta1          85 ITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAW----PELMKIMVDNTGAEQPENVKRASLLALG  160 (861)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCC----HHHHHHHHHHTSTTSCHHHHHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCch----HHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence                   01123466777888899999999999999987321 11000    0135667777755556678888999999


Q ss_pred             hhcCCCCCCCh---hhhhchHHHHHHhhc--CCChhHHHHHHHHHHHhccCChHHHH-HHHHhCcHHHHHHhcCCCCCcc
Q 012897          151 NFCRGKPQPPF---DQVRPALPALAQLVH--SNDEEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLGHPSPSV  224 (454)
Q Consensus       151 ~l~~~~~~~~~---~~~~~~l~~l~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~v  224 (454)
                      .++........   ......++.++..+.  ..+..++..++.++.++......... ......+++.+...+.++++++
T Consensus       161 ~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  240 (861)
T d2bpta1         161 YMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEV  240 (861)
T ss_dssp             HHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHH
Confidence            99866432222   222344555555554  34678999999999988765443221 1122345677788889999999


Q ss_pred             hhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHh-------------
Q 012897          225 LIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID-------------  291 (454)
Q Consensus       225 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-------------  291 (454)
                      +..++.++..++...+......+..-+...+....++. ++.++..+...+..++............             
T Consensus       241 ~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (861)
T d2bpta1         241 QAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFAL  319 (861)
T ss_dssp             HHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            99999999999875443333222222333344555566 8889999988888776421111111110             


Q ss_pred             ---CCChHHHHHHhhhc-------chhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHH
Q 012897          292 ---AGLVGPLVNLLQNA-------EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLE  361 (454)
Q Consensus       292 ---~~~i~~L~~ll~~~-------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~  361 (454)
                         ..+++.+...+...       +...+..+..++..++..........     ..+.+...+.+.++..+..++.++.
T Consensus       320 ~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~a~~~l~  394 (861)
T d2bpta1         320 SSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEP-----VLEFVEQNITADNWRNREAAVMAFG  394 (861)
T ss_dssp             HHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHH-----HHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhh-----hcchhhhhhhhHHHHHHHHHHHHHH
Confidence               12344455554321       33566777777766654322222222     2445666777889999999999998


Q ss_pred             HHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 012897          362 NILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL  420 (454)
Q Consensus       362 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  420 (454)
                      .+........           ....+  ...++.+.+...++++.++..+.+.+.++..
T Consensus       395 ~i~~~~~~~~-----------~~~~l--~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~  440 (861)
T d2bpta1         395 SIMDGPDKVQ-----------RTYYV--HQALPSILNLMNDQSLQVKETTAWCIGRIAD  440 (861)
T ss_dssp             HTSSSSCHHH-----------HHHHH--HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHhhcchhh-----------HHHHH--HHHHHHHHHHhcCcchhhhhHHHHHHHHHHH
Confidence            8876433221           11222  2245677788899999999999998877653

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.11  E-value=6.3e-10  Score=112.60  Aligned_cols=393  Identities=12%  Similarity=0.150  Sum_probs=227.2

Q ss_pred             cccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCC
Q 012897            4 GVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGA   83 (454)
Q Consensus         4 ~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~   83 (454)
                      .+.++++..+..|+.++..+.... ........-..+++.++..+.+++ +.+|..++++++.++....   ..+.....
T Consensus       377 ~~~~~~~~~~~~a~~~l~~i~~~~-~~~~~~~~l~~~l~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~---~~~~~~~~  451 (861)
T d2bpta1         377 NITADNWRNREAAVMAFGSIMDGP-DKVQRTYYVHQALPSILNLMNDQS-LQVKETTAWCIGRIADSVA---ESIDPQQH  451 (861)
T ss_dssp             HTTCSSHHHHHHHHHHHHHTSSSS-CHHHHHHHHHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHG---GGSCTTTT
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhc---hhhhhHHh
Confidence            356788999999999998887664 222222222347889999999998 9999999999999886211   11122233


Q ss_pred             hHHHHHhhC---CCCHHHHHHHHHHHHHhhCC----Chh-hHHHHHhcCChHHHHHHhc-hhhhhhHHHHHHHHHHhhcC
Q 012897           84 VPIFVKLLA---SPSDDVREQAVWALGNVAGD----SPR-CRDLVLSQGALIPLLAQLN-ERAKLSMLRNATWTLSNFCR  154 (454)
Q Consensus        84 i~~L~~lL~---~~~~~v~~~a~~~L~~l~~~----~~~-~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~  154 (454)
                      ++.++..+.   ..++.++..+++++..++..    ... ......  ..+..++.... ...+..++..+..++..+..
T Consensus       452 ~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~  529 (861)
T d2bpta1         452 LPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYP--ALVDGLIGAANRIDNEFNARASAFSALTTMVE  529 (861)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHH--HHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhHHHh--hHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            444444332   35677888888877776521    111 111110  12334444432 23456788888888888876


Q ss_pred             CCCCCChhhhhchHHHHHHhh----cCCC-----------hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC
Q 012897          155 GKPQPPFDQVRPALPALAQLV----HSND-----------EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH  219 (454)
Q Consensus       155 ~~~~~~~~~~~~~l~~l~~ll----~~~~-----------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~  219 (454)
                      ..+.........+.+.+...+    ....           ..++..++.++..+............+ .+++.++..+..
T Consensus       530 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~-~l~~~l~~~l~~  608 (861)
T d2bpta1         530 YATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFRLLEK  608 (861)
T ss_dssp             HCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHHHHS
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHH-HHHHHHhhhccc
Confidence            654333333333444333333    2211           123344444454444322222111111 345566666644


Q ss_pred             -CCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHH
Q 012897          220 -PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL  298 (454)
Q Consensus       220 -~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L  298 (454)
                       ++..++..++.+++.++..........+. .+++.+...+.+. ++.++..|+.+++.++...++...... ..+++.|
T Consensus       609 ~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~-~i~p~l~~~l~~~-~~~v~~~a~~~l~~i~~~~~~~~~~~~-~~i~~~L  685 (861)
T d2bpta1         609 KDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS-DAMMNVL  685 (861)
T ss_dssp             TTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH-HHHHHHH
T ss_pred             CCchhHHHHHHHHHHHHHHHhhHHHHHHHH-HHhhHHHHHhCCC-CHHHHHHHHHHHHHHHHHhHHHhHhhH-HHHHHHH
Confidence             45678889999999988754433333332 5778888899888 889999999999998875444333433 2477888


Q ss_pred             HHHhhhc--chhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCC----C-------HHHHHHHHHHHHHHHH
Q 012897          299 VNLLQNA--EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP----D-------PRIVTVCLEGLENILK  365 (454)
Q Consensus       299 ~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~----~-------~~v~~~al~~L~~l~~  365 (454)
                      ++.+..+  +..++..++.+++.++........+++-.  +++.+.+.+...    +       ..++..+++++..++.
T Consensus       686 ~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~  763 (861)
T d2bpta1         686 AQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLND--IMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVA  763 (861)
T ss_dssp             HHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888764  56889999999999876433333344322  445555544432    2       2367777777777765


Q ss_pred             hhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhc----CCCHHHHHHHHHHHHHhcC
Q 012897          366 VGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS----HDNNEIYEKAVKILETYWL  420 (454)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~----~~~~~v~~~a~~~l~~~~~  420 (454)
                      ......+      ...++...+     ++.+..+..    +.+.++...+..++..+.+
T Consensus       764 ~~~~~~~------~~~p~~~~i-----~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~~  811 (861)
T d2bpta1         764 GLHDKPE------ALFPYVGTI-----FQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA  811 (861)
T ss_dssp             HTTTCHH------HHGGGHHHH-----HHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred             HhcCCHH------HHHHHHHHH-----HHHHHHHHhCCccCCCHHHHHHHHHHHHHHHH
Confidence            3222111      111122222     223333332    3466777777777765554

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=2.1e-08  Score=101.46  Aligned_cols=389  Identities=13%  Similarity=0.069  Sum_probs=237.3

Q ss_pred             CCHHHHHHHHHHHHHHhccCCCCcHH----------HHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC-chhhH
Q 012897            8 DDSSLQLEATTQFRKLLSIERSPPIE----------EVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT-SENTK   76 (454)
Q Consensus         8 ~d~~~~~~a~~~L~~l~~~~~~~~~~----------~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~-~~~~~   76 (454)
                      .+..+|..|+..|++.+.........          .-....+...+++.+.+++ . ++..++.+++.++... +... 
T Consensus        49 ~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~-~-~~~~~a~~i~~i~~~~~p~~~-  125 (876)
T d1qgra_          49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTET-Y-RPSSASQCVAGIACAEIPVNQ-  125 (876)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCC-S-SSCHHHHHHHHHHHHHGGGTC-
T ss_pred             CCHHHHHHHHHHHHHHhhccccchhhhhhcccccCCHHHHHHHHHHHHHHhcCCc-H-HHHHHHHHHHHHHHHHCCccc-
Confidence            35678888888888877542111000          0112334566778887766 3 4556778888877521 1000 


Q ss_pred             HHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhch-hhhhhHHHHHHHHHHhhc
Q 012897           77 VVIDHGAVPIFVKLLASP--SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE-RAKLSMLRNATWTLSNFC  153 (454)
Q Consensus        77 ~~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~a~~~L~~l~  153 (454)
                         =.++++.|++.+.++  +..++..++.++..++..-......-.....++.++..+.. +.+.+++..++.++.+..
T Consensus       126 ---Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~  202 (876)
T d1qgra_         126 ---WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSL  202 (876)
T ss_dssp             ---CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHG
T ss_pred             ---cHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHH
Confidence               025788999888654  47789999999999874322111000111245666666643 345678888988888876


Q ss_pred             CCCC--CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHH
Q 012897          154 RGKP--QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT  231 (454)
Q Consensus       154 ~~~~--~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~  231 (454)
                      ....  .........+++.+...+.+++++++..++.++..++...+......+...+...+...+.+..+.++..++..
T Consensus       203 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  282 (876)
T d1qgra_         203 EFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEF  282 (876)
T ss_dssp             GGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            5531  11122224466777788889999999999999999987666554545554566666777777888888888877


Q ss_pred             HhHhhccCccch--------------------hhhhccCChHHHHHhhcCC------cchhHHHHHHHHHHHHhcCCHHH
Q 012897          232 VGNIVTGDDFQT--------------------QCIITYGALPYLLGLLTHS------HKKSIKKEACWTISNITAGNRDQ  285 (454)
Q Consensus       232 L~~l~~~~~~~~--------------------~~~~~~~~l~~L~~~L~~~------~~~~v~~~a~~~L~nl~~~~~~~  285 (454)
                      +..++.......                    .......+++.+...+...      ....++..|..++..++...+..
T Consensus       283 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~  362 (876)
T d1qgra_         283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD  362 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhh
Confidence            777764211000                    0000112233444443221      13357888888887776522111


Q ss_pred             HHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 012897          286 IQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILK  365 (454)
Q Consensus       286 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~  365 (454)
                         ++ ..+++.+.+.+.+.++..+..++.+++.+............ -...++.+...+.++++.++..+++++..+.+
T Consensus       363 ---~~-~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~  437 (876)
T d1qgra_         363 ---IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICE  437 (876)
T ss_dssp             ---GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             ---hh-hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHH-HHHHHHHHHHhhcCCccHHHHHHHHHHHHHHH
Confidence               11 11345556666677899999999999999876655443332 23468889999999999999999999999987


Q ss_pred             hhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 012897          366 VGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL  420 (454)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  420 (454)
                      ........       ..+...     .++.+.... .+++.++.++.+.+..+.+
T Consensus       438 ~~~~~~~~-------~~~~~~-----~~~~l~~~l-~~~~~v~~~~~~~l~~l~~  479 (876)
T d1qgra_         438 LLPEAAIN-------DVYLAP-----LLQCLIEGL-SAEPRVASNVCWAFSSLAE  479 (876)
T ss_dssp             HCGGGTSS-------TTTHHH-----HHHHHHHHT-TSCHHHHHHHHHHHHHHHH
T ss_pred             Hcchhhhh-------HHHhhh-----HHHHHHHHh-cCCHHHHHHHHHHHHHHHH
Confidence            65432210       011111     123344433 4468888888887776653

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.8e-08  Score=100.56  Aligned_cols=312  Identities=14%  Similarity=0.150  Sum_probs=186.1

Q ss_pred             ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 012897            3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG   82 (454)
Q Consensus         3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g   82 (454)
                      +.+.++++..+..++..+..++......... -.-..+++.+...+.+++ +.++..++++++.++...+..   .....
T Consensus       373 ~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~---~~~~~  447 (876)
T d1qgra_         373 EHIKNPDWRYRDAAVMAFGCILEGPEPSQLK-PLVIQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEA---AINDV  447 (876)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHTSSSSCHHHHH-HHHHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGG---TSSTT
T ss_pred             HhhccchHHHHHHHHHHHHhhhhhhhHHHHH-HHHHHHHHHHHHhhcCCc-cHHHHHHHHHHHHHHHHcchh---hhhHH
Confidence            3467888999999998888877654122222 223447888999999998 999999999999998632221   11122


Q ss_pred             ----ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH----------HHHh---cCChHHHHHHhch--hhhhhHHH
Q 012897           83 ----AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD----------LVLS---QGALIPLLAQLNE--RAKLSMLR  143 (454)
Q Consensus        83 ----~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~----------~~~~---~~~i~~l~~~l~~--~~~~~~~~  143 (454)
                          .++.++..+. .++.++..+++++.+++........          ....   ...+..+...+..  .....++.
T Consensus       448 ~~~~~~~~l~~~l~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~  526 (876)
T d1qgra_         448 YLAPLLQCLIEGLS-AEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRS  526 (876)
T ss_dssp             THHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHH
T ss_pred             HhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHhHHH
Confidence                3444454444 4788999999999988632110000          0000   0123444555432  22456778


Q ss_pred             HHHHHHHhhcCCCCCCChhhhhchHHHHHHh----hcCC------C-----hhHHHHHHHHHHHhccCChHHHHHHHHhC
Q 012897          144 NATWTLSNFCRGKPQPPFDQVRPALPALAQL----VHSN------D-----EEVLTDACWALSYLSDGTNDKIQAVIEAG  208 (454)
Q Consensus       144 ~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~l----l~~~------~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  208 (454)
                      .+..++..+...............++.+...    +...      .     ...+...+.++..+..........-....
T Consensus       527 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  606 (876)
T d1qgra_         527 SAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDV  606 (876)
T ss_dssp             HHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHH
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHH
Confidence            8888888877765444444444444444333    3211      1     12234444555555543322211111124


Q ss_pred             cHHHHHHhcCC--CCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHH
Q 012897          209 VCPRLVELLGH--PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI  286 (454)
Q Consensus       209 ~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~  286 (454)
                      +++.+..++..  ++..++..++.+++.++..........+ ..+++.+...+++..++.++..|+.+++.++...+...
T Consensus       607 i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l-~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~  685 (876)
T d1qgra_         607 VMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYM-EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNI  685 (876)
T ss_dssp             HHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGG
T ss_pred             HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHhh
Confidence            56666666654  4567888999999988864443332222 24677888888766467899999999998876433333


Q ss_pred             HHHHhCCChHHHHHHhhhc--chhhHHHHHHHHHHhcC
Q 012897          287 QAVIDAGLVGPLVNLLQNA--EFDIKKEAAWAISNATS  322 (454)
Q Consensus       287 ~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~  322 (454)
                      .... ..+++.+++.+++.  +..++..++++++.++.
T Consensus       686 ~~~~-~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~  722 (876)
T d1qgra_         686 IPFC-DEVMQLLLENLGNENVHRSVKPQILSVFGDIAL  722 (876)
T ss_dssp             HHHH-HHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHH
T ss_pred             hhhH-HHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHH
Confidence            3333 34678888888764  56788899999887754

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.69  E-value=2.8e-06  Score=76.19  Aligned_cols=299  Identities=16%  Similarity=0.138  Sum_probs=182.8

Q ss_pred             ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHH-HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh-
Q 012897            3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID-   80 (454)
Q Consensus         3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-   80 (454)
                      ..++++|.-....+...+..+++.. .......- -......+-.+...++ .+.+..++.++..+.. .++.|..+.. 
T Consensus       129 ~~l~~~d~~~~~~s~~i~~ll~~~~-~~~~~~~e~l~~~~~~l~~l~~~~~-~~~~~i~v~~lq~llr-~~~~R~~fw~~  205 (477)
T d1ho8a_         129 VSLKGDFQTVLISGFNVVSLLVQNG-LHNVKLVEKLLKNNNLINILQNIEQ-MDTCYVCIRLLQELAV-IPEYRDVIWLH  205 (477)
T ss_dssp             HCSCSSHHHHHHHHHHHHHHHTSTT-TCCHHHHHHHHHCHHHHHHHHCTTC-HHHHHHHHHHHHHHHT-SHHHHHHHHTT
T ss_pred             HhccCchhHHHHHHHHHHHHHHhcc-ccccchHHHHHHhhHHHHHhhcccc-cchHHHHHHHHHHHhc-CccHHHHHHHc
Confidence            3467777888888888888887664 22222110 1112333334445556 7888899999999988 7888887754 


Q ss_pred             -CCChHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCChhhHHHHHhc--CChHHHHHHhchhhhhh
Q 012897           81 -HGAVPIFVKLLAS-----------------PSDDVREQAVWALGNVAGDSPRCRDLVLSQ--GALIPLLAQLNERAKLS  140 (454)
Q Consensus        81 -~g~i~~L~~lL~~-----------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~l~~~l~~~~~~~  140 (454)
                       ...++.++..|..                 ....++-.++.+++-++. .+.....+...  +.++.+++++.....+.
T Consensus       206 ~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~l~~~~~~~i~~l~~i~~~s~KEK  284 (477)
T d1ho8a_         206 EKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEK  284 (477)
T ss_dssp             HHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHH
T ss_pred             ccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence             2345555555532                 125778889999999975 44455555544  34778888887788899


Q ss_pred             HHHHHHHHHHhhcCCCCCCC------hhhhhchHHHHHHhhcC--CChhHHHHHHHHHHHhcc----C---ChHHHHHHH
Q 012897          141 MLRNATWTLSNFCRGKPQPP------FDQVRPALPALAQLVHS--NDEEVLTDACWALSYLSD----G---TNDKIQAVI  205 (454)
Q Consensus       141 ~~~~a~~~L~~l~~~~~~~~------~~~~~~~l~~l~~ll~~--~~~~v~~~a~~~L~~l~~----~---~~~~~~~~~  205 (454)
                      +.+.++.++.|++.......      .....++++.+-.+...  .|+++.... ..|.....    .   .+.....+ 
T Consensus       285 vvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl-~~L~~~L~~~~k~lTsfd~Y~~Ev-  362 (477)
T d1ho8a_         285 VSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDI-SNLKEILENEYQELTSFDEYVAEL-  362 (477)
T ss_dssp             HHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHH-HHHHHHHHHHHHTCCHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHH-HHHHHHHHHHHHhcCcHHHHHHHH-
Confidence            99999999999997642211      11223444444333332  356654332 22222111    0   01111111 


Q ss_pred             HhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcC---------CcchhHHHHHHHHHH
Q 012897          206 EAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH---------SHKKSIKKEACWTIS  276 (454)
Q Consensus       206 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~---------~~~~~v~~~a~~~L~  276 (454)
                             ....|.- +|..+....| --|.....+..      ..+++.|+.+|++         +.++.+..-||.-++
T Consensus       363 -------~Sg~L~W-SP~H~se~FW-~EN~~kf~e~~------~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiG  427 (477)
T d1ho8a_         363 -------DSKLLCW-SPPHVDNGFW-SDNIDEFKKDN------YKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDIT  427 (477)
T ss_dssp             -------HHTCCCC-CGGGGCHHHH-HHHSGGGSSGG------GHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHH
T ss_pred             -------hcCCCCC-CCCcCChhHH-HHHHHhhcccc------hHHHHHHHHHHhhcccccccccCCCcceeehhhhhHH
Confidence                   1111211 1222222222 12222222211      1356788888852         226778889999999


Q ss_pred             HHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897          277 NITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS  322 (454)
Q Consensus       277 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  322 (454)
                      .++...|..+..+-+.|+=..+++++.++|++||.+|+.++..+..
T Consensus       428 efvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         428 HVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            9999878877777778999999999999999999999999988754

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.61  E-value=3.7e-06  Score=75.37  Aligned_cols=340  Identities=11%  Similarity=0.090  Sum_probs=196.0

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH---HHHhCC--ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 012897           39 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK---VVIDHG--AVPIFVKLLASPSDDVREQAVWALGNVAGDS  113 (454)
Q Consensus        39 ~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~---~~~~~g--~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  113 (454)
                      ..+..++.+|...+.+++....+..+..+...++....   .+.+..  .-..+..++.+++.-....+...+..++...
T Consensus        74 ~~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~  153 (477)
T d1ho8a_          74 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG  153 (477)
T ss_dssp             TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhcc
Confidence            45788999998866688888888888888774442222   111211  2234455565566667777777788887554


Q ss_pred             hhhHH---HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChh--hhhchHHHHHHhhcC-----------
Q 012897          114 PRCRD---LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD--QVRPALPALAQLVHS-----------  177 (454)
Q Consensus       114 ~~~~~---~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~l~~l~~ll~~-----------  177 (454)
                      .....   ....   ...++..+....+......++.++..+...++.+...  .....++.++..|+.           
T Consensus       154 ~~~~~~~e~l~~---~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~  230 (477)
T d1ho8a_         154 LHNVKLVEKLLK---NNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIV  230 (477)
T ss_dssp             TCCHHHHHHHHH---CHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred             ccccchHHHHHH---hhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccchhh
Confidence            33222   1211   2223333435556677777888888888765333222  223445555555532           


Q ss_pred             ------CChhHHHHHHHHHHHhccCChHHHHHHHHh--CcHHHHHHhcC-CCCCcchhhHHHHHhHhhccCccc-----h
Q 012897          178 ------NDEEVLTDACWALSYLSDGTNDKIQAVIEA--GVCPRLVELLG-HPSPSVLIPALRTVGNIVTGDDFQ-----T  243 (454)
Q Consensus       178 ------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~-----~  243 (454)
                            ....++++++.|+.-++.. +.....+.+.  +.++.++.+++ ...+.+.+-++.++.|++......     .
T Consensus       231 ~~~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~  309 (477)
T d1ho8a_         231 ATNSNHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK  309 (477)
T ss_dssp             -----CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred             cccCCCccHHHHHHHHHHHHHHHcC-HHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Confidence                  1246789999999998865 3344555553  34777887774 456778888889999998653321     2


Q ss_pred             hhhhccCChHHHHHhhcCC-cchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc---chhhHHHHHHHHHH
Q 012897          244 QCIITYGALPYLLGLLTHS-HKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA---EFDIKKEAAWAISN  319 (454)
Q Consensus       244 ~~~~~~~~l~~L~~~L~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~~  319 (454)
                      ..++..++++.+-.+.... .++++....- .|                       -+.|+..   -...-+...+....
T Consensus       310 ~~~v~~~~l~~l~~L~~r~~~Dedl~edl~-~L-----------------------~~~L~~~~k~lTsfd~Y~~Ev~Sg  365 (477)
T d1ho8a_         310 QLLLLGNALPTVQSLSERKYSDEELRQDIS-NL-----------------------KEILENEYQELTSFDEYVAELDSK  365 (477)
T ss_dssp             HHHHHHCHHHHHHHHHSSCCSSHHHHHHHH-HH-----------------------HHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred             HHHHHcchhHHHHHHhcCCCCCHHHHHHHH-HH-----------------------HHHHHHHHHhcCcHHHHHHHHhcC
Confidence            2233444444433332221 1333322211 11                       1111110   00111112222211


Q ss_pred             hcCCCCHHHHHHHHHc----------CCcHHHhhccC----------CCCHHHHHHHHHHHHHHHHhhhhhhhccCCccc
Q 012897          320 ATSGGTHEQIKYLVRE----------GCIKPLCDLFV----------CPDPRIVTVCLEGLENILKVGEAEKNMGTATAD  379 (454)
Q Consensus       320 l~~~~~~~~~~~l~~~----------~~i~~L~~~l~----------~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~  379 (454)
                      -....+......|+.+          .+++.|+++++          +.|+.+...||.=++.+++.-+.          
T Consensus       366 ~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~----------  435 (477)
T d1ho8a_         366 LLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE----------  435 (477)
T ss_dssp             CCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT----------
T ss_pred             CCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcc----------
Confidence            1111110000111111          23677888875          34677888899999999987654          


Q ss_pred             ccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 012897          380 VNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW  419 (454)
Q Consensus       380 ~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~  419 (454)
                         -+..+.+.|+-+.+.++++|+|++|+..|...++.++
T Consensus       436 ---gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  472 (477)
T d1ho8a_         436 ---SIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII  472 (477)
T ss_dssp             ---HHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             ---hhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence               4678889999999999999999999999999988765

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.58  E-value=3.8e-08  Score=72.00  Aligned_cols=109  Identities=19%  Similarity=0.207  Sum_probs=88.9

Q ss_pred             cCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChH
Q 012897          217 LGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVG  296 (454)
Q Consensus       217 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~  296 (454)
                      |.++++.+|..|+++|+.+..            ..++.|+..|.++ ++.+|..|+++|+++..  +         +.++
T Consensus         1 L~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~-~~~vR~~a~~~L~~~~~--~---------~~~~   56 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNE-DWRIRGAAAWIIGNFQD--E---------RAVE   56 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS--H---------HHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCC-CHHHHHHHHHHHHhcch--h---------hhHH
Confidence            567889999999999876531            3467788999988 99999999999987742  2         2467


Q ss_pred             HHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHH
Q 012897          297 PLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLE  361 (454)
Q Consensus       297 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~  361 (454)
                      .|..+++++++.||..|+++|+.+..   +.         .++.|..+++++++.++..++.+|.
T Consensus        57 ~L~~~l~d~~~~VR~~a~~aL~~i~~---~~---------~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          57 PLIKLLEDDSGFVRSGAARSLEQIGG---ER---------VRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHHCCTHHHHHHHHHHHHHCS---HH---------HHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHhhhccchhHHHHHHHHHHHHhCc---cc---------hHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            89999999999999999999998832   22         3677778999999999999988774

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.45  E-value=3e-08  Score=72.64  Aligned_cols=109  Identities=20%  Similarity=0.246  Sum_probs=88.3

Q ss_pred             hcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChH
Q 012897           48 LMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALI  127 (454)
Q Consensus        48 L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  127 (454)
                      |++++ +.+|..|+++|+.+..            ..++.|+..|.++++.+|..++++|+++..  +.         .++
T Consensus         1 L~D~~-~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--~~---------~~~   56 (111)
T d1te4a_           1 MADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--ER---------AVE   56 (111)
T ss_dssp             CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--HH---------HHH
T ss_pred             CCCcC-HHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch--hh---------hHH
Confidence            34566 7888888888766532            357889999999999999999999998742  11         367


Q ss_pred             HHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHH
Q 012897          128 PLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALS  191 (454)
Q Consensus       128 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~  191 (454)
                      .+..++ .++++.++..++++|..+..          ...++.|..+++++++.++..|+.+|.
T Consensus        57 ~L~~~l-~d~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          57 PLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHhhh-ccchhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            788888 78899999999999998853          467889999999999999999988774

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=0.0016  Score=54.46  Aligned_cols=201  Identities=14%  Similarity=0.117  Sum_probs=150.6

Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH----HHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhh
Q 012897           77 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR----DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF  152 (454)
Q Consensus        77 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~----~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l  152 (454)
                      .+...+.+..|+..|..-+.+.|..+..++.++.+.....+    +.+..  -...+..++....++++.-.+-..|+..
T Consensus        64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~--~~eil~~L~~gye~~eiAl~~G~mLREc  141 (330)
T d1upka_          64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC  141 (330)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHc--CHHHHHHHHhhcCCcchhhhhhHHHHHH
Confidence            34456788999999999899999999999999986544332    33332  2344445554445677777777778877


Q ss_pred             cCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhC---cHHHHHHhcCCCCCcchhhHH
Q 012897          153 CRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAG---VCPRLVELLGHPSPSVLIPAL  229 (454)
Q Consensus       153 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~i~~L~~ll~~~~~~v~~~a~  229 (454)
                      .++............+..+...+..++-++...|..++..+...+......++..+   ++...-.+|.+++.-++..++
T Consensus       142 ik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSl  221 (330)
T d1upka_         142 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  221 (330)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHH
Confidence            77754455555566777888899999999999999999988877666556666543   566777889999999999999


Q ss_pred             HHHhHhhccCccc---hhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897          230 RTVGNIVTGDDFQ---TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  280 (454)
Q Consensus       230 ~~L~~l~~~~~~~---~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~  280 (454)
                      ..|+.+.......   ...+-+..-+..++.+|++. +..++-+|..++.-+..
T Consensus       222 KLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~-sk~Iq~EAFhVFKvFVA  274 (330)
T d1upka_         222 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA  274 (330)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCc-hhhHHHHhhhHhhhhhc
Confidence            9999998643321   22333456789999999999 99999999999988876

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.26  E-value=0.038  Score=55.12  Aligned_cols=382  Identities=10%  Similarity=0.078  Sum_probs=192.3

Q ss_pred             CHHHHHHHHHHHHHHhccC-C--------CCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCC-CchhhHHH
Q 012897            9 DSSLQLEATTQFRKLLSIE-R--------SPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG-TSENTKVV   78 (454)
Q Consensus         9 d~~~~~~a~~~L~~l~~~~-~--------~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~   78 (454)
                      +..+|..|+..|++..... +        ++..+..++    ..++..+.+++ ..+|...+.++..++.. .++..   
T Consensus        50 ~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~~e~k~~Ik----~~ll~~l~~~~-~~ir~~l~~~i~~I~~~d~p~~W---  121 (959)
T d1wa5c_          50 PLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIK----KEIVPLMISLP-NNLQVQIGEAISSIADSDFPDRW---  121 (959)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHH----HHHHHHHHHSC-HHHHHHHHHHHHHHHHHHSTTTC---
T ss_pred             CHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHH----HHHHHHHhCCc-HHHHHHHHHHHHHHHHHhCcccc---
Confidence            5689999999998877531 0        112233333    34555555667 78999999999998862 12221   


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC------hhhHHHH--HhcCChHHHHHHhc-------hhh-h----
Q 012897           79 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS------PRCRDLV--LSQGALIPLLAQLN-------ERA-K----  138 (454)
Q Consensus        79 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~------~~~~~~~--~~~~~i~~l~~~l~-------~~~-~----  138 (454)
                        .++++.+++.++++++..+..++.++..++...      .......  ......+.+..++.       ... +    
T Consensus       122 --p~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  199 (959)
T d1wa5c_         122 --PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASL  199 (959)
T ss_dssp             --TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHH
T ss_pred             --HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Confidence              357889999999988999999999999887421      1111110  00112233333321       100 0    


Q ss_pred             ---hhHHHHHHHHHHhhcCCCCCCC-hhhhhchHHHHHHhhcCCC---------------hhHHHHHHHHHHHhccCChH
Q 012897          139 ---LSMLRNATWTLSNFCRGKPQPP-FDQVRPALPALAQLVHSND---------------EEVLTDACWALSYLSDGTND  199 (454)
Q Consensus       139 ---~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~l~~l~~ll~~~~---------------~~v~~~a~~~L~~l~~~~~~  199 (454)
                         ......+...+..+........ ........+.+..++....               ..++...+..+..+....+.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~  279 (959)
T d1wa5c_         200 NILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYED  279 (959)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhcccccccCchhhhhhhHHHHHHHHHHHHHHHHHHHhHH
Confidence               0122233334434433221100 1112233344444444321               13555566666666555444


Q ss_pred             HHHHHHHhCcHHHHHHhcC----C-CCCcchhhHHHHHhHhhccCccchhhhhccC-----ChHHHHHhhcC--------
Q 012897          200 KIQAVIEAGVCPRLVELLG----H-PSPSVLIPALRTVGNIVTGDDFQTQCIITYG-----ALPYLLGLLTH--------  261 (454)
Q Consensus       200 ~~~~~~~~~~i~~L~~ll~----~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-----~l~~L~~~L~~--------  261 (454)
                      ....... .++..+..++.    . ....+...++..+..++...... ..+....     +...+...+..        
T Consensus       280 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~l~~i~~~li~~~~~~~~~d~e~~  357 (959)
T d1wa5c_         280 VFGPMIN-EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYF-EIFNNESAMNNITEQIILPNVTLREEDVELF  357 (959)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHH-GGGCSHHHHHHHHHHTHHHHHSCCGGGTTTT
T ss_pred             HHHHHHH-HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhHHHH-HHHhhhhHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            4333332 33344444332    1 23445566667676666532211 1111101     11122222211        


Q ss_pred             --------------CcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhh------hcchhhHHHHHHHHHHhc
Q 012897          262 --------------SHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQ------NAEFDIKKEAAWAISNAT  321 (454)
Q Consensus       262 --------------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~------~~~~~v~~~a~~aL~~l~  321 (454)
                                    ......|..+..++..++...++.....+    .+.+...+.      +.++..+..+..+++.+.
T Consensus       358 ~~dp~~~~~~~~~~~~~~~~r~~a~~ll~~l~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~  433 (959)
T d1wa5c_         358 EDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIF----LAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALA  433 (959)
T ss_dssp             TTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHH----HHHHHHHHHHHHC----CHHHHHHHHHHHHHHH
T ss_pred             hcchHHHHHHHhhhcccccHHHHHHHHHHHHHHhccccchHHH----HHHHHHHHHhhccCCccchHHHHHHHHHHHHHH
Confidence                          10123466666777777764444322222    222222222      235667778888888775


Q ss_pred             CCCC------------HHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHH
Q 012897          322 SGGT------------HEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEE  389 (454)
Q Consensus       322 ~~~~------------~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  389 (454)
                      ..+.            .+.... ... .+...+.......+.++..+++++..+.......            ..     
T Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~-l~~-~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~------------~~-----  494 (959)
T d1wa5c_         434 INGNITNAGVSSTNNLLNVVDF-FTK-EIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKA------------QL-----  494 (959)
T ss_dssp             BSSCCBTTBCCCBCTTCCHHHH-HHH-HTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHH------------HH-----
T ss_pred             hhhhhhhhhhhcccchhhHHHH-HHH-HHHHHHccCCCchHHHHHHHHHHHHHHHhhccHH------------HH-----
Confidence            4321            011111 111 1222222334455678888888888875432111            11     


Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCCc
Q 012897          390 AEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDE  425 (454)
Q Consensus       390 ~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~  425 (454)
                      ...+..+.+.+.+++..|+..|.+.+.++....++.
T Consensus       495 ~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~  530 (959)
T d1wa5c_         495 IELMPILATFLQTDEYVVYTYAAITIEKILTIRESN  530 (959)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCS
T ss_pred             HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhccc
Confidence            224566777788899999999999999998765544

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.07  E-value=9.5e-05  Score=60.57  Aligned_cols=20  Identities=20%  Similarity=0.301  Sum_probs=12.9

Q ss_pred             HHHHHhcCCCCCcchhhHHH
Q 012897          211 PRLVELLGHPSPSVLIPALR  230 (454)
Q Consensus       211 ~~L~~ll~~~~~~v~~~a~~  230 (454)
                      +.++..|.++++.||..+..
T Consensus       212 ~~ll~~L~D~d~~VR~aA~~  231 (233)
T d1lrva_         212 LEALRELDEPDPEVRLAIAG  231 (233)
T ss_dssp             HHHHHHCCCCCHHHHHHHHC
T ss_pred             HHHHHHhCCCCHHHHHHHHH
Confidence            44556667777777776653

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.99  E-value=0.087  Score=45.18  Aligned_cols=244  Identities=16%  Similarity=0.152  Sum_probs=142.5

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh----CC---ChHHHHHhhCCCC--HHHHHHHHHHHHHhhC
Q 012897           41 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID----HG---AVPIFVKLLASPS--DDVREQAVWALGNVAG  111 (454)
Q Consensus        41 l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~----~g---~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~  111 (454)
                      +-.|++++..-+ .+-....   +..+ ...+..+..+.+    .|   .+..+.+++.++.  ..-....+..+.....
T Consensus        45 F~~Lv~~lR~~~-~e~l~~v---~~~~-~~~~~~r~~~lDal~~~GT~~a~~~i~~~I~~~~ls~~ea~~~l~~l~~~~~  119 (336)
T d1lsha1          45 FLRLTAFLRNVD-AGVLQSI---WHKL-HQQKDYRRWILDAVPAMATSEALLFLKRTLASEQLTSAEATQIVASTLSNQQ  119 (336)
T ss_dssp             HHHHHHHHTTSC-HHHHHHH---HHHH-TTSHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHCCC-HHHHHHH---HHHH-hcChhHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccCC
Confidence            446778888777 3322222   2222 224555555443    23   4555666666543  3333334444443322


Q ss_pred             CChhhHHHHHhcCChHHHHHHhch---hhhhhHHHHHHHHHHhhcC----CCCCCChhhhhchHHHHHHhhcCCChhHHH
Q 012897          112 DSPRCRDLVLSQGALIPLLAQLNE---RAKLSMLRNATWTLSNFCR----GKPQPPFDQVRPALPALAQLVHSNDEEVLT  184 (454)
Q Consensus       112 ~~~~~~~~~~~~~~i~~l~~~l~~---~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~  184 (454)
                      -++   +.      +..+..++..   ..++.++..+..+++++..    ..+.........+...+.+.....+.+-+.
T Consensus       120 Pt~---~~------l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  190 (336)
T d1lsha1         120 ATR---ES------LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIV  190 (336)
T ss_dssp             CCH---HH------HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCH---HH------HHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHH
Confidence            222   22      4445555532   2356677777777766653    333333444455555666667777888888


Q ss_pred             HHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC-------CCcchhhHHHHHhHhhccCccchhhhhccCChHHHHH
Q 012897          185 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP-------SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLG  257 (454)
Q Consensus       185 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~  257 (454)
                      .++.+|+|+..  +         ..++.+..++...       ...+|..|++++.++....+..        +.+.+++
T Consensus       191 ~~LkaLGN~g~--p---------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~--------v~~~l~~  251 (336)
T d1lsha1         191 LALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLP  251 (336)
T ss_dssp             HHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHH
T ss_pred             HHHHHHhccCC--H---------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHH--------HHHHHHH
Confidence            88999999863  2         3456677777432       3468999999999988654422        2244555


Q ss_pred             hhcC-CcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhh-cchhhHHHHHHHHHHhcCCCCHH
Q 012897          258 LLTH-SHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN-AEFDIKKEAAWAISNATSGGTHE  327 (454)
Q Consensus       258 ~L~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~  327 (454)
                      ++.+ ..+.++|..|+..|... ..+..         .+..+...+.. ++..|.......|.+++....+.
T Consensus       252 i~~n~~e~~EvRiaA~~~lm~t-~P~~~---------~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~P~  313 (336)
T d1lsha1         252 IFLNVAIKSELRIRSCIVFFES-KPSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPE  313 (336)
T ss_dssp             HHHCTTSCHHHHHHHHHHHHHT-CCCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGG
T ss_pred             HHcCCCCChHHHHHHHHHHHhc-CCCHH---------HHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCcc
Confidence            5543 33678998888887654 12222         34455665654 58889999999999998876554

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.035  Score=46.24  Aligned_cols=198  Identities=14%  Similarity=0.070  Sum_probs=139.6

Q ss_pred             HHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccch----hhhhc-cCChHHHHHhhcCCcchhHHHHHHHHHH
Q 012897          202 QAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQT----QCIIT-YGALPYLLGLLTHSHKKSIKKEACWTIS  276 (454)
Q Consensus       202 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~----~~~~~-~~~l~~L~~~L~~~~~~~v~~~a~~~L~  276 (454)
                      ..+...+++..++..|..-+.+.|..+..+.+++.+......    +.+.. ..++..|+....   ++++--.+...|.
T Consensus        63 ~e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye---~~eiAl~~G~mLR  139 (330)
T d1upka_          63 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIMLR  139 (330)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHHH
T ss_pred             HHHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC---CcchhhhhhHHHH
Confidence            446667889999999988888999999999999987544322    33332 234444444444   4455556666677


Q ss_pred             HHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHc---CCcHHHhhccCCCCHHHH
Q 012897          277 NITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVRE---GCIKPLCDLFVCPDPRIV  353 (454)
Q Consensus       277 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~---~~i~~L~~~l~~~~~~v~  353 (454)
                      .++.. +...+.++...-+..+.+.++.++.++...|..++..+.... +.....+...   .+...+..++.+++.-++
T Consensus       140 Ecik~-e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~h-k~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtr  217 (330)
T d1upka_         140 ECIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRH-KLLSAEFLEQHYDRFFSEYEKLLHSENYVTK  217 (330)
T ss_dssp             HHHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHTHHHHHHHHHHHTTCSSHHHH
T ss_pred             HHHhh-HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhC-HHHHHHHHHHhHHHHHHHHHHHhcCCchHHH
Confidence            66654 666677788888889999999999999999999999887763 4444444443   356677789999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHH
Q 012897          354 TVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKI  414 (454)
Q Consensus       354 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~  414 (454)
                      ..++..|+.++-...+..-          ....+.+..-+..+..++.+++..++-.|=.+
T Consensus       218 RqSlKLLgelLldr~N~~v----------m~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhV  268 (330)
T d1upka_         218 RQSLKLLGELLLDRHNFTI----------MTKYISKPENLKLMMNLLRDKSRNIQFEAFHV  268 (330)
T ss_dssp             HHHHHHHHHHHHSGGGHHH----------HHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHHH----------HHHHhCCHHHHHHHHHHhcCchhhHHHHhhhH
Confidence            9999999999965544321          23344445556677777888777776555444

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.76  E-value=0.12  Score=51.36  Aligned_cols=225  Identities=9%  Similarity=0.073  Sum_probs=124.1

Q ss_pred             CCCHHHHHHHHHHHHHHhccCCC-----------CcHHHHHHcCCHHHHHHhhcCCC--ChhHHHHHHHHHHHhcCCCch
Q 012897            7 SDDSSLQLEATTQFRKLLSIERS-----------PPIEEVIQSGVVPRFVEFLMRED--YPQLQFEAAWALTNIASGTSE   73 (454)
Q Consensus         7 s~d~~~~~~a~~~L~~l~~~~~~-----------~~~~~~~~~~~l~~L~~lL~~~~--~~~v~~~a~~~L~~l~~~~~~   73 (454)
                      +.++..+..++..+..+......           .....+.    .+.+...+...+  .+.++..++++++..+.....
T Consensus       416 ~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l----~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~  491 (959)
T d1wa5c_         416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF----TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK  491 (959)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH----HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH
T ss_pred             ccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHH----HHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccH
Confidence            45667777777777776543211           1122222    222333333322  277999999999998873221


Q ss_pred             hhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh--------HHHHHh--cCChHHHHHHhchhh----hh
Q 012897           74 NTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC--------RDLVLS--QGALIPLLAQLNERA----KL  139 (454)
Q Consensus        74 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~--------~~~~~~--~~~i~~l~~~l~~~~----~~  139 (454)
                        ..+  ..+++.++.+|.+++..++..|++++..++......        ...+..  ...+..++..+....    ..
T Consensus       492 --~~~--~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~  567 (959)
T d1wa5c_         492 --AQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKL  567 (959)
T ss_dssp             --HHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHH
T ss_pred             --HHH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhH
Confidence              111  246899999999999999999999999997532110        000000  011333444442211    11


Q ss_pred             hHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhc----C-CChhHHHHHHHHHHHhccCC-hHHHHHHHHhCcHHHH
Q 012897          140 SMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH----S-NDEEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRL  213 (454)
Q Consensus       140 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~----~-~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L  213 (454)
                      .....++.++..+..............+++.+...+.    + .++.....+..++..+.... +.... -+...+++.+
T Consensus       568 ~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~-~l~~~l~p~i  646 (959)
T d1wa5c_         568 AENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP-LLVDSMMPTF  646 (959)
T ss_dssp             TSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHH-HHHHHHHHHH
Confidence            1123345555554433222333334455555555442    2 24666777777777776432 33323 3334677888


Q ss_pred             HHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897          214 VELLGHPSPSVLIPALRTVGNIVTGDD  240 (454)
Q Consensus       214 ~~ll~~~~~~v~~~a~~~L~~l~~~~~  240 (454)
                      ...+..........++..+..+....+
T Consensus       647 ~~~~~~~~~~~~~~~~~l~~~~~~~~~  673 (959)
T d1wa5c_         647 LTVFSEDIQEFIPYVFQIIAFVVEQSA  673 (959)
T ss_dssp             HHHHHTTCTTTHHHHHHHHHHHHHHCS
T ss_pred             HHHHhccchhHHHHHHHHHHHHHHhCC
Confidence            888877777788888888877776543

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.64  E-value=0.0041  Score=50.52  Aligned_cols=114  Identities=10%  Similarity=0.106  Sum_probs=65.0

Q ss_pred             HHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHH
Q 012897          210 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAV  289 (454)
Q Consensus       210 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  289 (454)
                      +..|..+++++++.||..++..|.                  .+.+..++.++ +..||..++..+.             
T Consensus        68 ~~~L~~Ll~D~d~~VR~~AA~~Lp------------------~~~L~~L~~D~-d~~VR~~aa~~l~-------------  115 (233)
T d1lrva_          68 VEALTPLIRDSDEVVRRAVAYRLP------------------REQLSALMFDE-DREVRITVADRLP-------------  115 (233)
T ss_dssp             GGGGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTTTCS-CHHHHHHHHHHSC-------------
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHcC------------------HHHHHHHhcCC-ChhHHHHHHhccC-------------
Confidence            556778888999999988876542                  13355555666 7777776654321             


Q ss_pred             HhCCChHHHHHHhhhcchhhHHHHHHH-----HHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHH
Q 012897          290 IDAGLVGPLVNLLQNAEFDIKKEAAWA-----ISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL  360 (454)
Q Consensus       290 ~~~~~i~~L~~ll~~~~~~v~~~a~~a-----L~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L  360 (454)
                           .+.|..++.++++.||..++..     |..++...+.+....+...-..+.|..+++++++.|+..+...+
T Consensus       116 -----~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L  186 (233)
T d1lrva_         116 -----LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRL  186 (233)
T ss_dssp             -----TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHC
T ss_pred             -----HHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhc
Confidence                 1223444455555555555442     22222233333333333334456677777778888877766543

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.88  E-value=0.057  Score=46.54  Aligned_cols=139  Identities=12%  Similarity=0.071  Sum_probs=100.7

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHH-hCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCC-----HHHH------HHH
Q 012897          265 KSIKKEACWTISNITAGNRDQIQAVI-DAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGT-----HEQI------KYL  332 (454)
Q Consensus       265 ~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-----~~~~------~~l  332 (454)
                      ......+..||..+... ......++ ....+..+...+.++.+.++..|...|..++....     ....      ...
T Consensus        70 ~~~e~e~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~  148 (343)
T d2bnxa1          70 SRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM  148 (343)
T ss_dssp             HHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcc-HHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHh
Confidence            45677888999888864 44455555 57789999999999999999999999998875421     1111      122


Q ss_pred             HHcCCcHHHhhccCCC-CHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHH
Q 012897          333 VREGCIKPLCDLFVCP-DPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA  411 (454)
Q Consensus       333 ~~~~~i~~L~~~l~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a  411 (454)
                      .+.+-...+++.++.. +.+.+..++..+..++...+..+.       --..+..|...|..+.+.++.+.+++++....
T Consensus       149 ~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~-------R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~Qi  221 (343)
T d2bnxa1         149 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF-------RVHIRSELMRLGLHQVLQELREIENEDMKVQL  221 (343)
T ss_dssp             HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH-------HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHH
T ss_pred             cCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHH-------HHHHHHHHHHCChHHHHHHHHccCChHHHHHH
Confidence            2345577788877754 567888888888888876554442       22367789999999999999999988876554

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=95.40  E-value=0.29  Score=41.77  Aligned_cols=166  Identities=16%  Similarity=0.174  Sum_probs=108.8

Q ss_pred             ChHHHHHhhCC----CCHHHHHHHHHHHHHhh----CCChhhHHHHHhcCChHHHHHHhc---hhhhhhHHHHHHHHHHh
Q 012897           83 AVPIFVKLLAS----PSDDVREQAVWALGNVA----GDSPRCRDLVLSQGALIPLLAQLN---ERAKLSMLRNATWTLSN  151 (454)
Q Consensus        83 ~i~~L~~lL~~----~~~~v~~~a~~~L~~l~----~~~~~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~  151 (454)
                      .+..+..++++    .++.++..++.+++++.    ...+.+..     ..++.+...+.   ...+.+-+..++.+|+|
T Consensus       124 ~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~-----~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN  198 (336)
T d1lsha1         124 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGN  198 (336)
T ss_dssp             HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcH-----HHHHHHHHHHHHhhcccchHHHHHHHHHHhc
Confidence            35666667765    46888888888887765    22222211     12444444442   33455667778899999


Q ss_pred             hcCCCCCCChhhhhchHHHHHHhhcC-------CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--CCC
Q 012897          152 FCRGKPQPPFDQVRPALPALAQLVHS-------NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--PSP  222 (454)
Q Consensus       152 l~~~~~~~~~~~~~~~l~~l~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~  222 (454)
                      +-.          ...++.+..++..       ....++..|++++.+++...+....        +.+++++.+  .++
T Consensus       199 ~g~----------p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~  260 (336)
T d1lsha1         199 AGQ----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKS  260 (336)
T ss_dssp             HTC----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCH
T ss_pred             cCC----------HhHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCCh
Confidence            853          2567888888753       2467999999999999877654322        334444433  567


Q ss_pred             cchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcC
Q 012897          223 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG  281 (454)
Q Consensus       223 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~  281 (454)
                      ++|..|+..|...   .|..       ..+..+...+..+++.+|+......|.+++..
T Consensus       261 EvRiaA~~~lm~t---~P~~-------~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s  309 (336)
T d1lsha1         261 ELRIRSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRS  309 (336)
T ss_dssp             HHHHHHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhc---CCCH-------HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhC
Confidence            8898888877442   2211       23567788887766889999999999999874

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.85  E-value=0.72  Score=39.28  Aligned_cols=145  Identities=10%  Similarity=0.086  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcC----C------CChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897           12 LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR----E------DYPQLQFEAAWALTNIASGTSENTKVVIDH   81 (454)
Q Consensus        12 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~----~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (454)
                      .....+..|.--+..++...++.+ ..+++..|+.+|..    .      .+...+..++.||..+..........+-..
T Consensus        19 ~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~   97 (343)
T d2bnxa1          19 HLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETE   97 (343)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcCh
Confidence            334455555555655534456666 34556667666531    1      124578899999999998444444455566


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC--hhhHHH----------HHhcCChHHHHHHhchhhhhhHHHHHHHHH
Q 012897           82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDS--PRCRDL----------VLSQGALIPLLAQLNERAKLSMLRNATWTL  149 (454)
Q Consensus        82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~~~----------~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L  149 (454)
                      +++..+...+.++++.++..++.+|..+|...  +.....          .-+.+-+..++..+....+.+.+..++..+
T Consensus        98 ~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lI  177 (343)
T d2bnxa1          98 EGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLI  177 (343)
T ss_dssp             SHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHH
Confidence            89999999999999999999999999998532  222222          223345667777775555667777777777


Q ss_pred             HhhcCCCC
Q 012897          150 SNFCRGKP  157 (454)
Q Consensus       150 ~~l~~~~~  157 (454)
                      -.+....+
T Consensus       178 N~li~~~~  185 (343)
T d2bnxa1         178 NALITPAE  185 (343)
T ss_dssp             HHHHTTCS
T ss_pred             HHHHcCcc
Confidence            77766543

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.79  E-value=0.097  Score=38.51  Aligned_cols=112  Identities=8%  Similarity=-0.058  Sum_probs=77.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCC--
Q 012897          270 EACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC--  347 (454)
Q Consensus       270 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~--  347 (454)
                      .+..-++.+....+...+.     ++..+..-+.++++.++..|+..|-.+..++.+.+...+.+.+++..|+.+++.  
T Consensus        27 ~~ileicD~I~~~~~~~k~-----a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~  101 (145)
T d1ujka_          27 ASINGFCEQLNEDFEGPPL-----ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKY  101 (145)
T ss_dssp             HHHHHHHHHHTSSTTHHHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTT
T ss_pred             HHHHHHHHHHhCCCccHHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhcc
Confidence            4444455555433332222     345567777888999999999999999999888888888888899999998863  


Q ss_pred             ----CCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccH
Q 012897          348 ----PDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGL  393 (454)
Q Consensus       348 ----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  393 (454)
                          .++.|+..++..+........+..       ........+...|.+
T Consensus       102 ~~~~~~~~Vk~kil~li~~W~~~fp~~~-------~~~~~Y~~L~~~Gii  144 (145)
T d1ujka_         102 LGSRTSEKVKNKILELLYSWTVGLPEEV-------KIAEAYQMLKKQGIV  144 (145)
T ss_dssp             TGGGSCHHHHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHTTSC
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHCCCch-------HHHHHHHHHHHCCCc
Confidence                466899999999988866543322       223344555555543

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.26  E-value=0.13  Score=37.63  Aligned_cols=75  Identities=8%  Similarity=-0.110  Sum_probs=60.8

Q ss_pred             ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCC------CCHHHHHHHHHHHHHHHHhh
Q 012897          294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC------PDPRIVTVCLEGLENILKVG  367 (454)
Q Consensus       294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~------~~~~v~~~al~~L~~l~~~~  367 (454)
                      .+..+..-+.++++.++..|+..|-.+..++.+.+...+.+..+++.|+.++..      .++.|+..++..+.......
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f  118 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF  118 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            344566677888999999999999999998888887887888889999998863      46789999999988886654


Q ss_pred             h
Q 012897          368 E  368 (454)
Q Consensus       368 ~  368 (454)
                      .
T Consensus       119 ~  119 (143)
T d1mhqa_         119 P  119 (143)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.76  E-value=0.23  Score=36.43  Aligned_cols=72  Identities=19%  Similarity=0.236  Sum_probs=56.9

Q ss_pred             CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHh-cCCCHHHHHHHHHHH
Q 012897          337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ-SHDNNEIYEKAVKIL  415 (454)
Q Consensus       337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~-~~~~~~v~~~a~~~l  415 (454)
                      ++..|..-++++++.++..++..|..+++.+...            |...+...+.++.+..+. ...+..|++++..++
T Consensus        43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~------------f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li  110 (145)
T d1dvpa1          43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP------------VHEEVFTKENCEMFSSFLESTPHENVRQKMLELV  110 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchH------------HHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            4667777888999999999999999999876543            566666667777777775 445788999999999


Q ss_pred             HHhcC
Q 012897          416 ETYWL  420 (454)
Q Consensus       416 ~~~~~  420 (454)
                      +.+-.
T Consensus       111 ~~W~~  115 (145)
T d1dvpa1         111 QTWAY  115 (145)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98655

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.71  E-value=0.96  Score=32.78  Aligned_cols=72  Identities=14%  Similarity=0.143  Sum_probs=58.4

Q ss_pred             CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhc------CCCHHHHHH
Q 012897          337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS------HDNNEIYEK  410 (454)
Q Consensus       337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~------~~~~~v~~~  410 (454)
                      ++..|..-+.++++.++..++..|..+++.+...            |...+....+++.|.++..      ..++.|+++
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~------------fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~k  106 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEK------------FHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGR  106 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH------------HHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHH------------HHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHH
Confidence            4667777888899999999999999999876432            6777777888888988865      357899999


Q ss_pred             HHHHHHHhcC
Q 012897          411 AVKILETYWL  420 (454)
Q Consensus       411 a~~~l~~~~~  420 (454)
                      +..++..+-.
T Consensus       107 il~li~~Wa~  116 (143)
T d1mhqa_         107 VIEILFSWTV  116 (143)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987654

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.59  E-value=0.52  Score=34.65  Aligned_cols=73  Identities=15%  Similarity=0.186  Sum_probs=58.8

Q ss_pred             CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcC------CCHHHHHH
Q 012897          337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH------DNNEIYEK  410 (454)
Q Consensus       337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~------~~~~v~~~  410 (454)
                      ++..|..-+.++++.++..++..|..+++.+...            |...+....+++.|.++...      .++.|+++
T Consensus        40 a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~------------F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~k  107 (151)
T d1juqa_          40 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR------------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTK  107 (151)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHH------------HHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHH
Confidence            4667777788899999999999999999886543            66777777888888888753      47889999


Q ss_pred             HHHHHHHhcCc
Q 012897          411 AVKILETYWLE  421 (454)
Q Consensus       411 a~~~l~~~~~~  421 (454)
                      +..+++.+...
T Consensus       108 il~ll~~Wa~~  118 (151)
T d1juqa_         108 VIELLYSWTMA  118 (151)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999987653

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.34  E-value=0.39  Score=35.11  Aligned_cols=72  Identities=15%  Similarity=0.197  Sum_probs=59.1

Q ss_pred             CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhc------CCCHHHHHH
Q 012897          337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS------HDNNEIYEK  410 (454)
Q Consensus       337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~------~~~~~v~~~  410 (454)
                      ++..|..-+.++++.++..++..|..+++.+...            |...+...+++..|.++..      ..+..|+.+
T Consensus        46 a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~------------f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~k  113 (145)
T d1ujka_          46 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR------------FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNK  113 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHH------------HHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHH------------HHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHH
Confidence            5777788888999999999999999999875432            6778888888888888864      367899999


Q ss_pred             HHHHHHHhcC
Q 012897          411 AVKILETYWL  420 (454)
Q Consensus       411 a~~~l~~~~~  420 (454)
                      +..++..+..
T Consensus       114 il~li~~W~~  123 (145)
T d1ujka_         114 ILELLYSWTV  123 (145)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998754

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.59  E-value=0.57  Score=34.42  Aligned_cols=74  Identities=11%  Similarity=-0.050  Sum_probs=58.4

Q ss_pred             ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCC------CCHHHHHHHHHHHHHHHHhh
Q 012897          294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC------PDPRIVTVCLEGLENILKVG  367 (454)
Q Consensus       294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~------~~~~v~~~al~~L~~l~~~~  367 (454)
                      ++..+..-+.++++.++..|+..|-.+..++...+...+.+..++..|..+++.      .++.|+..++..+.......
T Consensus        40 a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~f  119 (151)
T d1juqa_          40 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL  119 (151)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHHHHHHHHHHHHHc
Confidence            345566667788899999999999999998877777777777888888888864      35679998888888876543

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.27  E-value=0.45  Score=34.80  Aligned_cols=75  Identities=4%  Similarity=-0.023  Sum_probs=57.9

Q ss_pred             ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCC-CCHHHHHHHHHHHHHHHHhhh
Q 012897          294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC-PDPRIVTVCLEGLENILKVGE  368 (454)
Q Consensus       294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~al~~L~~l~~~~~  368 (454)
                      ++..|..-+.++++.++..|+..|-.+..++.......+.+.+++..|..+++. .+..|+..++..+........
T Consensus        43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~  118 (145)
T d1dvpa1          43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR  118 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence            345566777888999999999999999988776666666667778888887764 466789999888888876443