Citrus Sinensis ID: 012910
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 453 | 2.2.26 [Sep-21-2011] | |||||||
| Q6CGU8 | 486 | Probable transporter MCH1 | yes | no | 0.304 | 0.283 | 0.322 | 8e-08 | |
| Q07376 | 486 | Probable transporter MCH1 | yes | no | 0.280 | 0.261 | 0.261 | 9e-05 | |
| Q6FWD4 | 489 | Probable transporter MCH1 | yes | no | 0.419 | 0.388 | 0.221 | 0.0001 | |
| Q96TW9 | 489 | Probable transporter MCH1 | N/A | no | 0.445 | 0.413 | 0.229 | 0.0007 |
| >sp|Q6CGU8|MCH1_YARLI Probable transporter MCH1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=MCH1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 17/155 (10%)
Query: 277 SSLISLWSIWNFLGRFGAGYVSDYFL-HVKEWARPLFM-VITLAAMSIGHLIIASGL--- 331
S+ +SL++ ++ + R G+ S+ HV +RP+ + VI L A I HL++ SG+
Sbjct: 313 STHVSLFATFSTVSRLVVGFSSEAMESHV---SRPVLLSVIALVAACI-HLMVPSGIFTV 368
Query: 332 -PGALYAG--SILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRV 388
A Y +I+ G YGS ++L+PTI ++++G+ +GTI+ + +A VGS + + +
Sbjct: 369 FDNAKYFSVVTIVNGFSYGSSFTLVPTIVTKVWGIANLGTIWGSFILALAVGSLGYGL-L 427
Query: 389 VGYIYDREAS-GEGNK---CTGTHCFMLSFFIMGS 419
+YD + G G+ C+G HC+ L+F I G+
Sbjct: 428 FAKVYDAASEVGVGSMSQVCSGVHCYGLTFVITGT 462
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Probable transporter. Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591) |
| >sp|Q07376|MCH1_YEAST Probable transporter MCH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MCH1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
Query: 276 TSSLISLWSIWNFLGRFGAGYVSDYFLHVK---EWARPLFMVITLAAMSIGHLIIASGLP 332
++ L+S +++ + R G V+D+F K +W F+ + + A + +S P
Sbjct: 318 STKLLSTYALSSTFTRLLTGIVADFFAKKKISIKWILLTFLSLGVCAQLFLLKMTSSASP 377
Query: 333 GALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYI 392
L LVG+ YG +++ PT+ ++G GT++ ++ IA +GS IF + +
Sbjct: 378 WGLVPTGSLVGIVYGGLFTVYPTLVLLVWGERSFGTVYGSLLIAPAIGSMIFCMLYAKFY 437
Query: 393 YDREASGEGN 402
R SG G+
Sbjct: 438 DSRCMSGGGD 447
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Probable transporter. Does not act in the transport of monocarboxylic acids across the plasma membrane. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q6FWD4|MCH1_CANGA Probable transporter MCH1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=MCH1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 95/217 (43%), Gaps = 27/217 (12%)
Query: 209 PSEPDVGTDTNDATTSLW-----GGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNIS 263
PS+ DV +D S + L++ +I + C +G + N+
Sbjct: 243 PSDNDVENHYDDNEQSRLLHATHAQQMTLMKVFRDPVLYIFGATIFCALGPLEMFIANMG 302
Query: 264 QIGGSL--GYSSFETSSLISLWSIWNFLGRFGAGYVSDYF----LHVKEW---------- 307
+ L G+ +S+L+S++++ + L R G G DYF L VK W
Sbjct: 303 SLTNVLAGGHEPAMSSALLSIYALTSTLTRLGTGLTVDYFNKRQLSVK-WILLLFLVVGL 361
Query: 308 -ARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQM 366
+ +++++++ H++ + L+ I+ G+ YG +++ PTI ++G
Sbjct: 362 VTQGKIYMLSMSSLDHSHMV---TINRKLFYIGIMQGIAYGGLFTIYPTITLMVWGEKMF 418
Query: 367 GTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNK 403
GT + T+ IA +GS + S + +YD E + +
Sbjct: 419 GTAYGTLMIAPALGSAL-SCLIYADVYDSECANSTTR 454
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Probable transporter. Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593) |
| >sp|Q96TW9|MCH1_HANAN Probable transporter MCH1 OS=Hansenula anomala GN=MCH1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 95/209 (45%), Gaps = 7/209 (3%)
Query: 208 LPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGG 267
L ++P+ + ND L+ I + ++L F++ +G + N+ +
Sbjct: 233 LLTDPNQEHENNDDLVP--NHKSKFLKFIKDISTYVLLFSLLLSIGPSEMYITNMGSLVK 290
Query: 268 SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARP--LFMVITLAAMSIGHL 325
++ +S S +++ ++++ L R G +SD+ + + +R L +I L + +
Sbjct: 291 AITPNSL-ISDQVAIHAVFSTLSRLSLGALSDFLVTNYQISRSWLLLSIIVLGFFTQIFI 349
Query: 326 IIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFS 385
++ + Y S L G YG ++L PT+ I+G G+ + + IA +GS F
Sbjct: 350 ATSTFVKDQYYIISALSGFSYGGLFTLYPTVIFSIWGPEIFGSAWGSFMIAPAIGSTTFG 409
Query: 386 VRVVGYIYDREASGEGNKCTGTHCFMLSF 414
+ V G +YD A G + T +C L F
Sbjct: 410 M-VFGLVYD-SACGVFAESTTGNCVSLVF 436
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Probable transporter. Hansenula anomala (taxid: 4927) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 453 | ||||||
| 225456622 | 537 | PREDICTED: uncharacterized protein LOC10 | 0.591 | 0.499 | 0.675 | 1e-108 | |
| 255540869 | 535 | conserved hypothetical protein [Ricinus | 0.580 | 0.491 | 0.682 | 1e-103 | |
| 357494111 | 535 | Nodulin-related protein [Medicago trunca | 0.536 | 0.454 | 0.712 | 8e-97 | |
| 356507186 | 534 | PREDICTED: uncharacterized protein LOC10 | 0.578 | 0.490 | 0.641 | 7e-95 | |
| 359491754 | 559 | PREDICTED: uncharacterized protein LOC10 | 0.631 | 0.511 | 0.577 | 3e-90 | |
| 297734047 | 612 | unnamed protein product [Vitis vinifera] | 0.582 | 0.431 | 0.609 | 8e-90 | |
| 449440744 | 531 | PREDICTED: uncharacterized protein LOC10 | 0.569 | 0.485 | 0.626 | 1e-88 | |
| 255540871 | 551 | conserved hypothetical protein [Ricinus | 0.613 | 0.504 | 0.588 | 2e-87 | |
| 29824365 | 533 | unknown protein [Arabidopsis thaliana] g | 0.554 | 0.470 | 0.610 | 3e-84 | |
| 449477604 | 543 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.609 | 0.508 | 0.547 | 4e-84 |
| >gi|225456622|ref|XP_002266496.1| PREDICTED: uncharacterized protein LOC100250053 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/287 (67%), Positives = 222/287 (77%), Gaps = 19/287 (6%)
Query: 166 KGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSL 225
+ S+ D TS+T E+++L DDP ++ AEK+ QDP GYH
Sbjct: 269 QQSNFDGTSQTFLIEKNQLIDDPKQLDAEKIGKGQDPAGYHL------------------ 310
Query: 226 WGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSI 285
G +L+LLQA+ T FW L AMACGMGSGLATVNNI QIGG+ GY SFETS+L+SLWSI
Sbjct: 311 -GENLNLLQAMGTCNFWCLFLAMACGMGSGLATVNNIGQIGGAFGYKSFETSTLVSLWSI 369
Query: 286 WNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVC 345
WNFLGRFG GYVSDYFLH + WARP+FMVITLA MSIGH +IASG+PGALYAGS+LVGV
Sbjct: 370 WNFLGRFGTGYVSDYFLHTRGWARPVFMVITLATMSIGHFVIASGMPGALYAGSVLVGVS 429
Query: 346 YGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCT 405
YGSQWSLMPTI SEIFGV +GTIFNTIT+A+PVGSYIFSVRVVGYIYD+EAS +GNKCT
Sbjct: 430 YGSQWSLMPTITSEIFGVQHLGTIFNTITMASPVGSYIFSVRVVGYIYDKEASADGNKCT 489
Query: 406 GTHCFMLSFFIMGSATLCGSLAAFGLFLRTKRFYNEVILRRLLHSVR 452
GTHCFM+SF IM SATL G A LFLRTK FYN+V+LRRL H R
Sbjct: 490 GTHCFMVSFLIMASATLLGCFVALILFLRTKSFYNQVVLRRLQHPGR 536
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540869|ref|XP_002511499.1| conserved hypothetical protein [Ricinus communis] gi|223550614|gb|EEF52101.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/274 (68%), Positives = 215/274 (78%), Gaps = 11/274 (4%)
Query: 180 EEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTL 239
+E ++ + +++ E R DP GY LPS P+ + +L QA T+
Sbjct: 273 KESDIVSERNQLVDESK--RDDPAGYISLPSNPEHDNGVYEK---------NLFQAARTV 321
Query: 240 EFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSD 299
+FWIL AMACGMGSGLATVNN+SQ+G SLGY+S ET++L+SLWSIWNFLGRFGAGY+SD
Sbjct: 322 DFWILFLAMACGMGSGLATVNNMSQVGESLGYASLETNTLVSLWSIWNFLGRFGAGYISD 381
Query: 300 YFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASE 359
YFLH + WARPLFM ITLA M+IGH++IASGLPGALYAGS+LVGVCYGSQWSLMPTI+SE
Sbjct: 382 YFLHSRGWARPLFMAITLAGMTIGHVVIASGLPGALYAGSLLVGVCYGSQWSLMPTISSE 441
Query: 360 IFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGS 419
IFGV MGTIFN ITIA+PVGSYIFSVRVVGYIYD+EASGEG C GTHCFM SF +M S
Sbjct: 442 IFGVGHMGTIFNAITIASPVGSYIFSVRVVGYIYDKEASGEGTACVGTHCFMSSFLVMAS 501
Query: 420 ATLCGSLAAFGLFLRTKRFYNEVILRRLLHSVRE 453
AT GSLAA L LRTK FYN VIL RLLHSVRE
Sbjct: 502 ATFLGSLAALALSLRTKTFYNRVILGRLLHSVRE 535
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357494111|ref|XP_003617344.1| Nodulin-related protein [Medicago truncatula] gi|355518679|gb|AET00303.1| Nodulin-related protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 360 bits (924), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 178/250 (71%), Positives = 203/250 (81%), Gaps = 7/250 (2%)
Query: 199 RQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLAT 258
R+D + LP++ DTN T GG+L+L QA+ TL FWIL +MACGMGSGLAT
Sbjct: 288 REDSSN-NLLPAD-----DTNSQRTLQQGGNLNLFQAVKTLNFWILFVSMACGMGSGLAT 341
Query: 259 VNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLA 318
VNN+SQIG SLGYS+ ET SL++LWSIWNFLGRFGAGYVSDYFLH + WARP FMVITL
Sbjct: 342 VNNMSQIGESLGYSTLETGSLVALWSIWNFLGRFGAGYVSDYFLHTRGWARPFFMVITLM 401
Query: 319 AMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANP 378
MSIGH++IA GLPGALY GSILVG+CYGSQWSLMPTI SEIFGV MG+IFNTITIA+P
Sbjct: 402 TMSIGHVVIAYGLPGALYVGSILVGICYGSQWSLMPTITSEIFGVGHMGSIFNTITIASP 461
Query: 379 VGSYIFSVRVVGYIYDREASG-EGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKR 437
VGSYIFSVRV+GYIYD+EASG EGNKC GTHCF SF IM SA + GSL A LFLRT+
Sbjct: 462 VGSYIFSVRVLGYIYDKEASGTEGNKCAGTHCFKFSFLIMASAAILGSLTALCLFLRTRH 521
Query: 438 FYNEVILRRL 447
FY +V+LRR+
Sbjct: 522 FYGQVVLRRI 531
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507186|ref|XP_003522351.1| PREDICTED: uncharacterized protein LOC100814668 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 353 bits (907), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 179/279 (64%), Positives = 209/279 (74%), Gaps = 17/279 (6%)
Query: 171 DRTSETSFCEEDE--LTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGG 228
++ S SF +E + + E EK R+D + N T G
Sbjct: 267 EKNSGRSFLDEGSPLIVEPSPEDTTEKEDARKD--------------SFNNQRTNLQLGE 312
Query: 229 DLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNF 288
+L+L QA+ T+ FW+L ++ACGMGSGLATVNN+ QIG SLGY+S ET SL+SLWSIWNF
Sbjct: 313 NLNLFQAVKTVNFWVLFVSVACGMGSGLATVNNLGQIGESLGYTSHETGSLVSLWSIWNF 372
Query: 289 LGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGS 348
LGRFGAGYVSDY+LH + WARPLFMVITL MSIGH++IASGLPGALYAGSILVG+CYGS
Sbjct: 373 LGRFGAGYVSDYYLHTRGWARPLFMVITLLIMSIGHVVIASGLPGALYAGSILVGICYGS 432
Query: 349 QWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTH 408
QWSLMPTI SEIFGV MG+IFNTITIA+PVGSYIFSVRVVGYIYD+EA +GN C GTH
Sbjct: 433 QWSLMPTITSEIFGVGNMGSIFNTITIASPVGSYIFSVRVVGYIYDKEA-WDGNTCIGTH 491
Query: 409 CFMLSFFIMGSATLCGSLAAFGLFLRTKRFYNEVILRRL 447
CFM SF IM SA + GSL+A GLF RTK FY +VILRR+
Sbjct: 492 CFMFSFLIMASAAILGSLSALGLFFRTKNFYGQVILRRI 530
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359491754|ref|XP_002266530.2| PREDICTED: uncharacterized protein LOC100244916 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 171/296 (57%), Positives = 207/296 (69%), Gaps = 10/296 (3%)
Query: 159 GTAVGIMKGSDSDRTSETSFCEEDELTDDPHEMHAEK-MHVRQDPVGYHRLPSEPDVGTD 217
G A +K + E L D + +E+ DP +H + + D
Sbjct: 270 GIAANALKDESEISSQGLVSSERSPLLSDNGSLQSERWSSAAGDPKEHHAADEDTPMLQD 329
Query: 218 TNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETS 277
D L+++QA+ T FW+L AMACGMGSGLAT+NNISQIG SLGY++ E +
Sbjct: 330 EED---------LNVVQAMRTGNFWLLFIAMACGMGSGLATINNISQIGESLGYTTVEIN 380
Query: 278 SLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYA 337
+L+SLWSIWNFLGRFGAGYVSD LH + WARPL MVITLA M+IGH+IIASG G LY
Sbjct: 381 TLVSLWSIWNFLGRFGAGYVSDILLHRRGWARPLLMVITLATMTIGHVIIASGFAGNLYV 440
Query: 338 GSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREA 397
GS++VGVCYGSQWSLMPTI SE+FGV MGTIFNTI IA+PVGSY+ SVRV+GYIYD+EA
Sbjct: 441 GSVIVGVCYGSQWSLMPTITSELFGVGHMGTIFNTIAIASPVGSYLLSVRVIGYIYDKEA 500
Query: 398 SGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKRFYNEVILRRLLHSVRE 453
SG+ N C+GTHCFMLSF I+G TL GSL A LF RTKRFY V+LRRL S+++
Sbjct: 501 SGKQNSCSGTHCFMLSFLIIGCVTLFGSLVASALFFRTKRFYKLVVLRRLNLSLQD 556
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297734047|emb|CBI15294.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 337 bits (864), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 167/274 (60%), Positives = 206/274 (75%), Gaps = 10/274 (3%)
Query: 180 EEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTL 239
+E E++ + +E+ + +DP +H + + D D L+++QA+ T
Sbjct: 264 DESEISSQGL-VSSERSPLLRDPKEHHAADEDTPMLQDEED---------LNVVQAMRTG 313
Query: 240 EFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSD 299
FW+L AMACGMGSGLAT+NNISQIG SLGY++ E ++L+SLWSIWNFLGRFGAGYVSD
Sbjct: 314 NFWLLFIAMACGMGSGLATINNISQIGESLGYTTVEINTLVSLWSIWNFLGRFGAGYVSD 373
Query: 300 YFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASE 359
LH + WARPL MVITLA M+IGH+IIASG G LY GS++VGVCYGSQWSLMPTI SE
Sbjct: 374 ILLHRRGWARPLLMVITLATMTIGHVIIASGFAGNLYVGSVIVGVCYGSQWSLMPTITSE 433
Query: 360 IFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGS 419
+FGV MGTIFNTI IA+PVGSY+ SVRV+GYIYD+EASG+ N C+GTHCFMLSF I+G
Sbjct: 434 LFGVGHMGTIFNTIAIASPVGSYLLSVRVIGYIYDKEASGKQNSCSGTHCFMLSFLIIGC 493
Query: 420 ATLCGSLAAFGLFLRTKRFYNEVILRRLLHSVRE 453
TL GSL A LF RTKRFY V+LRRL S+++
Sbjct: 494 VTLFGSLVASALFFRTKRFYKLVVLRRLNLSLQD 527
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440744|ref|XP_004138144.1| PREDICTED: uncharacterized protein LOC101216552 [Cucumis sativus] gi|449477327|ref|XP_004154992.1| PREDICTED: uncharacterized protein LOC101231734 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 176/281 (62%), Positives = 211/281 (75%), Gaps = 23/281 (8%)
Query: 169 DSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGG 228
+S R SF E D+L ++ ++ H R G ++ ++
Sbjct: 270 ESRRILHPSFTESDQLIGRHNQETSDFDHER---------------GRESEES------- 307
Query: 229 DLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNF 288
L L QA+ T++FWIL FA ACGMG+GLATVNNISQIG SLGY+S E ++L+SLWSIWNF
Sbjct: 308 -LTLFQALYTIDFWILFFATACGMGTGLATVNNISQIGLSLGYTSSEINTLVSLWSIWNF 366
Query: 289 LGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGS 348
GRFGAGYVSDY+LH K WARPLFM ITL MSIGH++IASGLPGAL+AGSI+VGVCYGS
Sbjct: 367 FGRFGAGYVSDYYLHAKGWARPLFMFITLMTMSIGHVVIASGLPGALFAGSIVVGVCYGS 426
Query: 349 QWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTH 408
QWSLMPTI SEIFGV+ MGTIFN IT+A+PVGSY+FSVRVVGYIYD+EAS EG+ C GT+
Sbjct: 427 QWSLMPTITSEIFGVVHMGTIFNAITVASPVGSYLFSVRVVGYIYDKEASSEGDTCIGTY 486
Query: 409 CFMLSFFIMGSATLCGSLAAFGLFLRTKRFYNEVILRRLLH 449
CFMLSFFIM ATL GSLAA GLF + FY++V++RRL H
Sbjct: 487 CFMLSFFIMAFATLLGSLAALGLFFWRRSFYDQVVVRRLQH 527
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540871|ref|XP_002511500.1| conserved hypothetical protein [Ricinus communis] gi|223550615|gb|EEF52102.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 166/282 (58%), Positives = 203/282 (71%), Gaps = 4/282 (1%)
Query: 170 SDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDV-GTDTNDATTSLWGG 228
SDR ++ +E P+ M + ++ +DP Y L S D+ T+D +S
Sbjct: 273 SDRYAQALL---EERGYKPNTMMSSELPTEEDPNDYRALLSNEDLEAKATSDHRSSSDEE 329
Query: 229 DLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNF 288
DL+LLQA+ T FW+L AM CG+GSGLAT+NNISQ+G SLGY++ +SL+SL SIWNF
Sbjct: 330 DLNLLQAVSTGNFWLLFIAMFCGLGSGLATINNISQVGQSLGYTAISRNSLVSLLSIWNF 389
Query: 289 LGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGS 348
LGRFGAG++SD FLH WARPLF+ ITLA ++IGH++IASG P LY GS+LVG+ YGS
Sbjct: 390 LGRFGAGFISDIFLHRGGWARPLFVAITLATLAIGHIVIASGFPYNLYLGSVLVGISYGS 449
Query: 349 QWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTH 408
QWSLMPTI SEIFGV MGTIFNTI IA+P+GSYIFSVRV+GYIYD+ ASGE N C GT
Sbjct: 450 QWSLMPTITSEIFGVGHMGTIFNTIAIASPLGSYIFSVRVIGYIYDKAASGEDNLCYGTR 509
Query: 409 CFMLSFFIMGSATLCGSLAAFGLFLRTKRFYNEVILRRLLHS 450
CFMLSF IM S G L A LF RT+RFY V+LRR+ HS
Sbjct: 510 CFMLSFLIMASVAFFGVLVALVLFFRTRRFYQAVVLRRVHHS 551
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|29824365|gb|AAP04143.1| unknown protein [Arabidopsis thaliana] gi|110739083|dbj|BAF01458.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 157/257 (61%), Positives = 186/257 (72%), Gaps = 6/257 (2%)
Query: 199 RQDPVGYHRLPSEPDVGTDTNDAT---TSLWGG---DLDLLQAICTLEFWILSFAMACGM 252
+ P Y L S P T N ++ + + G DL+LLQA+ L FW+L AM CGM
Sbjct: 276 KTVPHDYSPLISSPKATTSGNQSSEGDSKVEAGLSEDLNLLQAMKKLSFWLLFLAMICGM 335
Query: 253 GSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLF 312
GSGL+T+NNI QIG SL YSS E +SL+SLWSIWNFLGRFGAGY SD LH K W RPL
Sbjct: 336 GSGLSTINNIRQIGESLRYSSVEINSLVSLWSIWNFLGRFGAGYASDALLHKKGWPRPLL 395
Query: 313 MVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNT 372
M TL MSIGHLIIASG G LY GS++VGVCYGSQWSLMPTI SE+FG+ MGTIFNT
Sbjct: 396 MAATLGTMSIGHLIIASGFQGNLYVGSVIVGVCYGSQWSLMPTITSELFGIRHMGTIFNT 455
Query: 373 ITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLF 432
I++A+P+GSYIFSVR++GYIYD+ ASGEGN C G+HCF LSF IM S G L A LF
Sbjct: 456 ISVASPIGSYIFSVRLIGYIYDKTASGEGNTCYGSHCFRLSFIIMASVAFFGFLVAIVLF 515
Query: 433 LRTKRFYNEVILRRLLH 449
RTK Y +++++RL H
Sbjct: 516 FRTKTLYRQILVKRLHH 532
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449477604|ref|XP_004155069.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101230019 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 160/292 (54%), Positives = 197/292 (67%), Gaps = 16/292 (5%)
Query: 159 GTAVGIMKGSDSDRTSETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPD---VG 215
G A+ K D +S + E+ + + P + AE D V YH LP E + V
Sbjct: 261 GIAINAQK-EDFRGSSSSLIAEKSHVVNKPESIDAE------DSVEYHELPREENQIMVV 313
Query: 216 TDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFE 275
++T T +++L+AI T+ FW+L AM CGMGSGLAT+NN+SQ+G SLGY+ E
Sbjct: 314 SNTRAPQT------MNVLEAIRTINFWLLFLAMVCGMGSGLATINNMSQLGQSLGYTETE 367
Query: 276 TSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGAL 335
T + +SLWSIWNFLGRFGAGY SD+ H WARPL M ITL MS GH++IASG G L
Sbjct: 368 TKTFVSLWSIWNFLGRFGAGYTSDFLFHTYGWARPLLMAITLLIMSGGHIVIASGFSGNL 427
Query: 336 YAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDR 395
Y GSILVG+CYGSQWSLMPTI SEIFG+ MGTIFNTI IA+P+GSYIFSVRV+GYIYDR
Sbjct: 428 YVGSILVGICYGSQWSLMPTITSEIFGLEHMGTIFNTIAIASPLGSYIFSVRVIGYIYDR 487
Query: 396 EASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKRFYNEVILRRL 447
EA+ E C+G HCF++SFF+M G L A LF RT+RFY RR+
Sbjct: 488 EAAREHGACSGIHCFVVSFFVMAIVAFLGFLVAAALFFRTRRFYQLASQRRV 539
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 453 | ||||||
| TAIR|locus:2027284 | 533 | AT1G74780 [Arabidopsis thalian | 0.547 | 0.465 | 0.614 | 2.9e-133 | |
| TAIR|locus:2011241 | 526 | AT1G18940 [Arabidopsis thalian | 0.483 | 0.416 | 0.618 | 9.1e-126 | |
| TAIR|locus:2040809 | 525 | AT2G34350 [Arabidopsis thalian | 0.505 | 0.436 | 0.609 | 7.4e-122 | |
| TAIR|locus:1005716659 | 523 | AT2G34355 [Arabidopsis thalian | 0.485 | 0.420 | 0.622 | 5.9e-120 | |
| TAIR|locus:2056103 | 601 | AT2G39210 "AT2G39210" [Arabido | 0.485 | 0.366 | 0.418 | 1.5e-79 | |
| TAIR|locus:2046238 | 577 | AT2G28120 [Arabidopsis thalian | 0.494 | 0.388 | 0.415 | 1.6e-74 | |
| TAIR|locus:2174683 | 579 | AT5G14120 [Arabidopsis thalian | 0.573 | 0.449 | 0.349 | 2.6e-72 | |
| TAIR|locus:2078643 | 584 | AT3G01930 [Arabidopsis thalian | 0.472 | 0.366 | 0.376 | 1.8e-71 | |
| TAIR|locus:2059829 | 546 | AT2G16660 [Arabidopsis thalian | 0.472 | 0.391 | 0.392 | 1.7e-67 | |
| TAIR|locus:2116855 | 567 | AT4G34950 [Arabidopsis thalian | 0.507 | 0.405 | 0.381 | 2.8e-67 |
| TAIR|locus:2027284 AT1G74780 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 807 (289.1 bits), Expect = 2.9e-133, Sum P(2) = 2.9e-133
Identities = 156/254 (61%), Positives = 185/254 (72%)
Query: 202 PVGYHRLPSEPDVGTDTNDAT---TSLWGG---DLDLLQAICTLEFWILSFAMACGMGSG 255
P Y L S P T N ++ + + G +L+LLQA+ L FW+L AM CGMGSG
Sbjct: 279 PHDYSPLISSPKATTSGNQSSEGDSKVEAGLSENLNLLQAMKKLSFWLLFLAMICGMGSG 338
Query: 256 LATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVI 315
L+T+NNI QIG SL YSS E +SL+SLWSIWNFLGRFGAGY SD LH K W RPL M
Sbjct: 339 LSTINNIRQIGESLRYSSVEINSLVSLWSIWNFLGRFGAGYASDALLHKKGWPRPLLMAA 398
Query: 316 TLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITI 375
TL MSIGHLIIASG G LY GS++VGVCYGSQWSLMPTI SE+FG+ MGTIFNTI++
Sbjct: 399 TLGTMSIGHLIIASGFQGNLYVGSVIVGVCYGSQWSLMPTITSELFGIRHMGTIFNTISV 458
Query: 376 ANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRT 435
A+P+GSYIFSVR++GYIYD+ ASGEGN C G+HCF LSF IM S G L A LF RT
Sbjct: 459 ASPIGSYIFSVRLIGYIYDKTASGEGNTCYGSHCFRLSFIIMASVAFFGFLVAIVLFFRT 518
Query: 436 KRFYNEVILRRLLH 449
K Y +++++RL H
Sbjct: 519 KTLYRQILVKRLHH 532
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| TAIR|locus:2011241 AT1G18940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 750 (269.1 bits), Expect = 9.1e-126, Sum P(2) = 9.1e-126
Identities = 136/220 (61%), Positives = 169/220 (76%)
Query: 230 LDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFL 289
L+LLQA+C ++FW+L AM CGMGSG++T+NNI QIG SL Y+S E +SL++LW+IWNF+
Sbjct: 306 LNLLQAMCNVDFWLLFLAMICGMGSGISTINNIRQIGESLRYTSVEINSLLALWNIWNFI 365
Query: 290 GRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQ 349
GRFG GYVSD+ LH K W RPL M TL M+IGHLIIASG G LY GSI+VG+CYGSQ
Sbjct: 366 GRFGGGYVSDWLLHRKGWPRPLLMATTLGTMTIGHLIIASGFQGNLYPGSIIVGICYGSQ 425
Query: 350 WSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHC 409
WSLMPTI SE+FGV MGTI+NTI+IA+P+GSYIFSVR++GYIYDR GEGN C G HC
Sbjct: 426 WSLMPTITSELFGVKHMGTIYNTISIASPMGSYIFSVRLIGYIYDRTIIGEGNTCYGPHC 485
Query: 410 FMLSFFIMGSATLCGSLAAFGLFLRTKRFYNEVILRRLLH 449
F L++ ++ S G L + L RTK Y + I ++LH
Sbjct: 486 FRLAYVVIASVAFLGFLVSCVLVFRTKTIYRQ-IFEKILH 524
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| TAIR|locus:2040809 AT2G34350 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 769 (275.8 bits), Expect = 7.4e-122, Sum P(2) = 7.4e-122
Identities = 142/233 (60%), Positives = 180/233 (77%)
Query: 216 TDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFE 275
+D D T+ D+++L+AICT FW+L AM CGMGSGLAT+NNI Q+G SL YS+ +
Sbjct: 296 SDVKDVMTN----DMNVLEAICTTNFWLLFVAMICGMGSGLATINNIRQMGESLRYSTVQ 351
Query: 276 TSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGAL 335
+SL+SLWSIWNFLGRFG+GY+SD +LH W RP+FM ITL M+IGH+++ASGL G+L
Sbjct: 352 LNSLVSLWSIWNFLGRFGSGYISDTYLHSHGWPRPVFMAITLGLMAIGHIVMASGLLGSL 411
Query: 336 YAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDR 395
Y GS+LVG+ YGSQWSLMPTI SEIFGVL MGTIF TI+IA+PVGSY FSV+V+GY+YD+
Sbjct: 412 YIGSLLVGLAYGSQWSLMPTITSEIFGVLHMGTIFYTISIASPVGSYFFSVKVIGYLYDK 471
Query: 396 EASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKRFYNEVILRRLL 448
AS + + C G HCF SF IM + L GSL A L LRTK+FY ++ +R+L
Sbjct: 472 VASEDDHSCYGNHCFRTSFLIMAAMALLGSLVALVLLLRTKKFYATLVAKRIL 524
|
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| TAIR|locus:1005716659 AT2G34355 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 747 (268.0 bits), Expect = 5.9e-120, Sum P(2) = 5.9e-120
Identities = 137/220 (62%), Positives = 169/220 (76%)
Query: 229 DLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNF 288
D ++L+A+ T+ FW+L AM CGMGSG ATVNN+ QIG SL YSS + +SL+SLWSIWNF
Sbjct: 303 DSNILEAMSTVNFWLLFLAMLCGMGSGFATVNNMRQIGESLRYSSVQLNSLVSLWSIWNF 362
Query: 289 LGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGS 348
LGRFGAGYVSD FLH W RP+FM ITL M+IGH+I+ASG+ G+LYAGS+L+G+ YGS
Sbjct: 363 LGRFGAGYVSDTFLHKHSWPRPIFMAITLGVMAIGHIIVASGVQGSLYAGSVLIGMAYGS 422
Query: 349 QWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTH 408
QWSLMPTI SEIFG+ MGTI+ TI+IA P+GSYI SV+V+GY YD+ AS + N C G+
Sbjct: 423 QWSLMPTITSEIFGIRHMGTIYFTISIAGPIGSYILSVKVIGYFYDKVASEDDNSCFGSQ 482
Query: 409 CFMLSFFIMGSATLCGSLAAFGLFLRTKRFYNEVILRRLL 448
CF SF IM S L GSL A LF RT +FY ++ +R L
Sbjct: 483 CFRTSFMIMASVALFGSLVASVLFFRTHKFYKNLVAKRNL 522
|
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| TAIR|locus:2056103 AT2G39210 "AT2G39210" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 488 (176.8 bits), Expect = 1.5e-79, Sum P(3) = 1.5e-79
Identities = 97/232 (41%), Positives = 141/232 (60%)
Query: 227 GGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIW 286
G D +LQA+ +++ IL A CG+G L ++N+ QIG SLGY S+ +SL SIW
Sbjct: 331 GDDYTILQALFSVDMLILFLATICGVGGTLTAIDNLGQIGNSLGYPKRSVSTFVSLVSIW 390
Query: 287 NFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCY 346
N+ GR +G VS+ FL ++ RPL + + L GHL+IA +PG LY S+++G C+
Sbjct: 391 NYYGRVVSGVVSEIFLIKYKFPRPLMLTMVLLLSCAGHLLIAFNVPGGLYVASVIIGFCF 450
Query: 347 GSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREAS-------- 398
G+QW L+ I SEIFG+ T++N ++A+P+GSY+ +VRV GY+YD EA
Sbjct: 451 GAQWPLLFAIISEIFGLKYYSTLYNFGSVASPIGSYLLNVRVAGYLYDVEAGKQYKALGK 510
Query: 399 ----GEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKRFYNEVILRR 446
G+ C GT CF LSF I+ + TL G L + L +RTK+FY I ++
Sbjct: 511 TRVEGQDLNCIGTSCFKLSFIIIAAVTLFGVLVSMVLVIRTKKFYKSDIYKK 562
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| TAIR|locus:2046238 AT2G28120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 458 (166.3 bits), Expect = 1.6e-74, Sum P(3) = 1.6e-74
Identities = 98/236 (41%), Positives = 140/236 (59%)
Query: 227 GGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIW 286
G D +LQA+ + + IL A CG+GS L V+N+ QIG SLGY + SS +SL SIW
Sbjct: 322 GEDYTILQALLSTDMIILFVATFCGLGSSLTAVDNLGQIGESLGYPNHTVSSFVSLVSIW 381
Query: 287 NFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCY 346
N+ GR +G+VS+Y L + RPL M + L GHL+IA +PG++Y SIL+G +
Sbjct: 382 NYFGRVFSGFVSEYLLAKYKLPRPLMMTLVLLLSCAGHLLIAFPVPGSVYIASILMGFSF 441
Query: 347 GSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREA------SGE 400
G+Q L+ I SE+FG+ T+FN +A+P+GSYI +VRV G +YD+EA G
Sbjct: 442 GAQLPLLFAIISELFGLKYYSTLFNCGQLASPLGSYILNVRVTGMLYDKEALKQLTARGL 501
Query: 401 GNK------CTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKRFYNEVILRRLLHS 450
K C G+ C+ L F I+ + T G+L + GL +RT+ FY I ++ S
Sbjct: 502 TRKDVKDLTCLGSQCYKLPFLILAAVTFFGALVSLGLAIRTREFYKGDIYKKFRES 557
|
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| TAIR|locus:2174683 AT5G14120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 461 (167.3 bits), Expect = 2.6e-72, Sum P(3) = 2.6e-72
Identities = 95/272 (34%), Positives = 148/272 (54%)
Query: 181 EDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLE 240
EDE D + A + H R + + + + N G D L QA+ +
Sbjct: 304 EDEKPKDVDLLPASERHKRIAHLQAQLMQAAAEGAVRVNRRRGPHRGEDFTLTQALVKAD 363
Query: 241 FWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDY 300
FW++ F++ G GSGL ++N+ Q+ SLGY + T L+S+ SIWNFLGR G GY S+
Sbjct: 364 FWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDN--THVLVSMISIWNFLGRIGGGYFSEL 421
Query: 301 FLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEI 360
+ + RP+ M + MS+GH+ A G PGA+Y G++L+G+ YG+ W+++P ASE+
Sbjct: 422 VVRDYAYPRPVAMAVAQLIMSVGHIFFAYGWPGAMYIGTLLIGLGYGAHWAIVPATASEL 481
Query: 361 FGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGN----------KCTGTHCF 410
FG+ + G ++N +T+ANP GS +FS + IYDREA + + +C G+ CF
Sbjct: 482 FGLKKFGALYNFLTLANPAGSLVFSGMIASSIYDREAERQAHGSVFDPDDALRCNGSICF 541
Query: 411 MLSFFIMGSATLCGSLAAFGLFLRTKRFYNEV 442
L+ IM + + + L RTK Y +
Sbjct: 542 FLTSLIMSGFCIIACMLSMILVRRTKSVYTHL 573
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| TAIR|locus:2078643 AT3G01930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 441 (160.3 bits), Expect = 1.8e-71, Sum P(3) = 1.8e-71
Identities = 85/226 (37%), Positives = 134/226 (59%)
Query: 227 GGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIW 286
G D L QA+ +FW++ F++ G GSGL ++N+ Q+ SLGY + T +S+ SIW
Sbjct: 355 GEDFTLTQALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDN--THVFVSMISIW 412
Query: 287 NFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCY 346
NFLGR G GY S+ + + RP+ + + MS+GH+ A G PGA++ G++L+G+ Y
Sbjct: 413 NFLGRIGGGYFSELIVRDYAYPRPVAIAVAQLVMSVGHIFFAYGWPGAMHIGTLLIGLGY 472
Query: 347 GSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREAS--GEGN-- 402
G+ W+++P ASE+FG+ + G ++N +T+ANP GS +FS + IYDREA +G+
Sbjct: 473 GAHWAIVPATASELFGLKKFGALYNFLTLANPAGSLVFSGLIASSIYDREAERQAQGSLF 532
Query: 403 ------KCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKRFYNEV 442
+C G+ C+ L+ IM L + + L RTK Y +
Sbjct: 533 NPDDVLRCRGSICYFLTSLIMSGFCLIAAALSMILVQRTKPVYTNL 578
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| TAIR|locus:2059829 AT2G16660 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 452 (164.2 bits), Expect = 1.7e-67, Sum P(3) = 1.7e-67
Identities = 86/219 (39%), Positives = 139/219 (63%)
Query: 227 GGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIW 286
G D +++A+ T++FW+L + CG+G+GLA +NN+ QIG +LGY++ S +S+ SIW
Sbjct: 316 GEDHTIMEAVLTVDFWVLFVSFLCGVGTGLAVMNNMGQIGLALGYTN--VSIFVSMTSIW 373
Query: 287 NFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCY 346
F GR +G +S+YFL RPL+ + M++G++++A +P +LY GS++VGVCY
Sbjct: 374 GFFGRILSGTLSEYFLKKAGTPRPLWNAASQILMAVGYILMALAVPNSLYIGSMVVGVCY 433
Query: 347 GSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREAS---GEGNK 403
G + ++ ASE+FG+ G I+N + + P+GS++FS + G++YD EA+ G GN
Sbjct: 434 GVRLAITVPTASELFGLKYYGLIYNILVLNLPLGSFLFSGLLAGFLYDAEATPTPGGGNT 493
Query: 404 CTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKRFYNEV 442
C G HC+ L F +M A++ G L RTK Y ++
Sbjct: 494 CVGAHCYRLIFIVMALASVIGVGLDLVLAYRTKEIYAKI 532
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| TAIR|locus:2116855 AT4G34950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 450 (163.5 bits), Expect = 2.8e-67, Sum P(3) = 2.8e-67
Identities = 90/236 (38%), Positives = 145/236 (61%)
Query: 211 EPDVGTD-TNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSL 269
E + GT T + + G + +++A+ T++FW+L + CG+G+GLA +NN+ QIG +L
Sbjct: 320 EENHGTIVTTEKKRPVLGEEHTIMEAMLTVDFWVLFVSFLCGVGTGLAVMNNMGQIGLAL 379
Query: 270 GYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS 329
GY+ + S +S+ SIW F GR +G +S++F+ RPL+ M++G+L++A
Sbjct: 380 GYT--DVSIFVSMTSIWGFFGRILSGTISEHFIKKAGTPRPLWNAAAQIIMAVGYLLMAL 437
Query: 330 GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVV 389
LPG+LY GS++VGVCYG + ++ ASE+FG+ G I+N + + P+GS++FS +
Sbjct: 438 ALPGSLYIGSMVVGVCYGVRLAITVPTASELFGLKYYGLIYNILILNMPLGSFLFSGLLA 497
Query: 390 GYIYDREAS---GEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKRFYNEV 442
G +YD EA+ G GN C G HCF + F +M A++ G L RTK Y ++
Sbjct: 498 GLLYDAEATPTPGGGNTCVGAHCFRIVFIVMAFASIIGVGLDLLLAYRTKGIYAKI 553
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00000065001 | SubName- Full=Chromosome chr17 scaffold_101, whole genome shotgun sequence; (520 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 453 | |||
| pfam06813 | 248 | pfam06813, Nodulin-like, Nodulin-like | 4e-44 | |
| TIGR00890 | 377 | TIGR00890, 2A0111, oxalate/formate antiporter fami | 5e-15 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 5e-07 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 7e-06 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 4e-05 |
| >gnl|CDD|219187 pfam06813, Nodulin-like, Nodulin-like | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 4e-44
Identities = 67/156 (42%), Positives = 90/156 (57%), Gaps = 18/156 (11%)
Query: 12 RWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANTGTLSGVLY 71
RW+ VA+IWIQ +G+ Y FS+YS ALK++ Y Q L+ + V KD+G N G LSG+
Sbjct: 1 RWLGLVAAIWIQSFAGANYDFSLYSSALKSSLGYSQVQLNLLGVAKDLGKNFGWLSGLAA 60
Query: 72 TYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLF 131
Y L PWVVLLVGA F GY + W +V G IP P ++CL
Sbjct: 61 EY------------------LPPWVVLLVGAAMGFVGYGVQWLAVTGKIPGLPYWLLCLA 102
Query: 132 MLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKG 167
+ A + + +FNTA +VT +RNFP G +GI+KG
Sbjct: 103 ICLAGNSICWFNTASLVTCIRNFPESRGVVLGILKG 138
|
This family represents a conserved region within plant nodulin-like proteins. Length = 248 |
| >gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 5e-15
Identities = 76/382 (19%), Positives = 126/382 (32%), Gaps = 37/382 (9%)
Query: 11 TRWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANTGTLSGVL 70
W V ++ + TSG +YT+++ +P L T + +
Sbjct: 1 RWWYVLVGTVIMCFTSGYVYTWTLLAPPLGRYFGVGVTAV-----------------AIW 43
Query: 71 YTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCL 130
+T + P L GP V ++G I G+ + + + L
Sbjct: 44 FTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA-------DSLAALYL 96
Query: 131 FMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKGSDSDRTSETSFCEEDELTDDPHE 190
A+ G+ + T+V+ FP G A GI+ G + S + +
Sbjct: 97 TYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVINLEGVP 156
Query: 191 MHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMAC 250
M + V + D + + + T +FW+L +
Sbjct: 157 AAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNIEVSVKDYTVWEMLRTPQFWVLYLSFFL 216
Query: 251 GMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARP 310
SGL + G SLG S +S+ SI+N GR G +SD R
Sbjct: 217 NAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDK------IGRQ 270
Query: 311 LFMVITLAAMSIGHLIIASGLP---GALYAGSILVGVCYGSQWSLMPTIASEIFG----V 363
M I ++G + A LV +G SL P++ S+IFG
Sbjct: 271 KTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSA 330
Query: 364 LQMGTIFNTITIANPVGSYIFS 385
G ++ +A G I S
Sbjct: 331 ANYGFLYTAKAVAGIFGGLIAS 352
|
This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 40/194 (20%), Positives = 71/194 (36%), Gaps = 20/194 (10%)
Query: 241 FWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSD 299
+L+ A + + LG S+ E L+SL+ + LG G +SD
Sbjct: 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD 236
Query: 300 YFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIAS 358
R L ++I L ++G L++A + L +L+G G + + T+AS
Sbjct: 237 RLGR-----RRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLAS 291
Query: 359 EIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMG 418
E+ GT +G + + + G + D T + F I+
Sbjct: 292 ELAPPEARGTASGLFNTFGSLGGALGPL-LAGLLLD------------TGGYGGVFLILA 338
Query: 419 SATLCGSLAAFGLF 432
+ L +L L
Sbjct: 339 ALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 5e-07
Identities = 29/155 (18%), Positives = 61/155 (39%), Gaps = 8/155 (5%)
Query: 241 FWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDY 300
+L + + LG S+ + ++S +S+ LG AGY+SD
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 301 FLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASE 359
F R +++ L ++G L++A + L G L+G+ G+ + + +E
Sbjct: 61 FG------RRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAE 114
Query: 360 IFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYD 394
F + G + +G+ + + G + +
Sbjct: 115 WFPPKERGRALGLFSAGFGLGA-LLGPLLGGLLAE 148
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 7e-06
Identities = 27/172 (15%), Positives = 58/172 (33%), Gaps = 4/172 (2%)
Query: 211 EPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLG 270
P + + + + L A+ + A + + LG
Sbjct: 174 RPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLG 233
Query: 271 YSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-S 329
S+ L+ L + +GR G +SD + R L ++ L ++G +++ +
Sbjct: 234 LSALLAGLLLGLAGLLGAIGRLLLGRLSD---RLGRRRRLLLALLLLILAALGLALLSLT 290
Query: 330 GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGS 381
L +L+G G + + + S++ + GT A +G
Sbjct: 291 ESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGG 342
|
Length = 346 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 4e-05
Identities = 37/196 (18%), Positives = 71/196 (36%), Gaps = 21/196 (10%)
Query: 244 LSFAMAC-GMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFL 302
L A G+G L + LG S E L++ +S+ L + AG +SD F
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF- 59
Query: 303 HVKEWARPLFMVITLAAMSIGHLIIASGLP-GALYAGSILVGVCYGSQWSLMPTIASEIF 361
R ++I L ++G L++ L +L G+ G+ + + ++ F
Sbjct: 60 -----GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWF 114
Query: 362 GVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSAT 421
+ G ++ +G+ + + + G + G +F I+
Sbjct: 115 PPEERGRALGLLSAGFGLGAALGPL-LGGLLASL---------FGWR---AAFLILAILA 161
Query: 422 LCGSLAAFGLFLRTKR 437
L ++ A L R
Sbjct: 162 LLAAVLAALLLPRPPP 177
|
Length = 346 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 453 | |||
| PTZ00207 | 591 | hypothetical protein; Provisional | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.98 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.98 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.97 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.97 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.97 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.97 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.97 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.97 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.97 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.97 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.97 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.97 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.96 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.96 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.96 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.96 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.96 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.96 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.96 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.96 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.96 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.96 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.96 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.96 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.96 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.96 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.96 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.96 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.96 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.95 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.95 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.95 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.95 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.95 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.95 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.95 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.95 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.95 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.95 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.94 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.94 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.94 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.94 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.94 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.94 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.94 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.94 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.94 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.94 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.94 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.93 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.93 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.93 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.93 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.93 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.93 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.93 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.93 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.92 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.92 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.92 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.92 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.92 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.91 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.91 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.9 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.9 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.9 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.9 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.89 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.89 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.89 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.89 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.87 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.86 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.86 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.86 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.86 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.85 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.85 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.84 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.82 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.81 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.81 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.81 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.79 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.79 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.79 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.78 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.76 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.76 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.75 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.75 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.74 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.74 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.73 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.72 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.72 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.71 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.7 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.69 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.68 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.65 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.64 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.63 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.6 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.6 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.55 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.52 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.51 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.51 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.51 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.5 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.49 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.49 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.49 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.49 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.48 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.47 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.45 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.45 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.45 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.45 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.44 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.44 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.44 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.44 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.44 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.44 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.43 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.43 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.43 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.43 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.42 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.42 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.42 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.41 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.41 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.41 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.41 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.41 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.4 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.4 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.4 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.4 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.39 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.39 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.38 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.38 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.37 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.37 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.37 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.36 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.36 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.36 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.35 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.34 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.33 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.33 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.3 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.3 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.29 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.29 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.29 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.27 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.26 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.25 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.24 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.23 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.22 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.21 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.2 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.2 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.2 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.18 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.17 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.17 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.16 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.16 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.16 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.15 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.15 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.14 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.13 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.12 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.12 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.12 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.11 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.11 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.1 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.09 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.07 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.07 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.06 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.05 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.05 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.04 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.03 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.03 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.95 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.95 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.9 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.89 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.86 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.84 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.83 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.79 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.75 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.74 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 98.74 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.74 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.73 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.72 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.72 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.68 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.68 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.64 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.61 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.59 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.59 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.52 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.52 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.52 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.52 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.44 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.39 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.34 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.33 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.32 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.23 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.18 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.16 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.14 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.13 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.12 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.06 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.96 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 97.93 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 97.85 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.84 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.79 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.78 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.77 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 97.62 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.58 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.54 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.47 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 97.47 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 97.3 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.24 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.22 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.19 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.04 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.04 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.99 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.93 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.92 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 96.87 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.78 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.68 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.55 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.54 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 96.45 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 95.94 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 95.7 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 95.22 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 95.08 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 94.95 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 94.91 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 94.07 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 94.0 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 93.69 | |
| KOG4830 | 412 | consensus Predicted sugar transporter [Carbohydrat | 92.57 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 92.07 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 92.04 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 89.63 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 89.15 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 88.57 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 85.61 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 83.85 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 80.75 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 80.64 |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=298.69 Aligned_cols=415 Identities=16% Similarity=0.210 Sum_probs=313.2
Q ss_pred ccccHHHHHHHHHHHHhhcCcccccccchhHHhhcCCCccchhHHHHHHHHhhhhcchhhhhhhccCCCCCCCCcchhhh
Q 012910 9 LNTRWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANTGTLSGVLYTYSTSDHSSHHPRQQRL 88 (453)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~~g~l~dr~g~~~~~~~p~~g~~ 88 (453)
+.+||.+++++++++.+.|..|.++++.|++++++|+|..+++++.+.......++++.|++.||+|
T Consensus 23 e~~Rw~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G------------- 89 (591)
T PTZ00207 23 EPRRFALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLG------------- 89 (591)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------------
Confidence 4689999999999999999999999999999999999999999776655444456678999999999
Q ss_pred hhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcCCCccchhheeccc
Q 012910 89 TRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKGS 168 (453)
Q Consensus 89 ~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p~~rg~~~g~~~~~ 168 (453)
+|+++.++.++++++++++++++.+... ++++.++++|+++|+|.+..++.+...+.+|||++||++.|+..++
T Consensus 90 -----~R~vllig~ll~~iG~ll~ala~~~~i~-~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~ 163 (591)
T PTZ00207 90 -----PRPIFVLSMTVFCLGTLLFALTFQEVIE-GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTF 163 (591)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHH
Confidence 9999999999999999998876454443 5899999999999999999999999999999999999999999766
Q ss_pred CCCCc---------------------------------------ccccccccCc--------------------------
Q 012910 169 DSDRT---------------------------------------SETSFCEEDE-------------------------- 183 (453)
Q Consensus 169 ~~~~~---------------------------------------~~~~~~~w~~-------------------------- 183 (453)
.+++. .+....+|+.
T Consensus 164 ~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~ 243 (591)
T PTZ00207 164 TGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMW 243 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCce
Confidence 65500 0000011111
Q ss_pred ccchh-------------------------------hhhhh-hhcccc-----cC------CCCcccCCCCC--C--CCC
Q 012910 184 LTDDP-------------------------------HEMHA-EKMHVR-----QD------PVGYHRLPSEP--D--VGT 216 (453)
Q Consensus 184 ~~~~~-------------------------------~~~~~-~~~~l~-----~~------~~~~~~~~~~~--~--~~~ 216 (453)
.|... ..+.. +...++ .+ ++++.+.+.++ + ++.
T Consensus 244 ~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (591)
T PTZ00207 244 RFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEV 323 (591)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccc
Confidence 23211 00000 000011 00 00000000000 0 000
Q ss_pred CC-Cc-------C-CcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhhc-CCChhh--hhHHHHHHH
Q 012910 217 DT-ND-------A-TTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSL-GYSSFE--TSSLISLWS 284 (453)
Q Consensus 217 ~~-~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~--~~~~~~~~~ 284 (453)
.. +. + ..|+. ..++++.+++.++|++++.+++..+.+..+++++.++.+.+ |.+.+. ...+.++.+
T Consensus 324 ~~~~~~~~~~~~~~~~P~~--~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~s 401 (591)
T PTZ00207 324 SAAEDKVVETDVDYIAPQF--QETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNG 401 (591)
T ss_pred cccccccccccccCCCCCC--cchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhh
Confidence 00 00 0 11221 23889999999999999999999999999999999999999 873333 333889999
Q ss_pred HHHHHHhhhhhhhhhhhhhccc---cCchhHHHHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHhhhhhhhhhHHHHhHh
Q 012910 285 IWNFLGRFGAGYVSDYFLHVKE---WARPLFMVITLAAMSIGHLIIASGLP-GALYAGSILVGVCYGSQWSLMPTIASEI 360 (453)
Q Consensus 285 i~~~ig~~~~G~l~Dr~~~~~~---~~r~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~l~g~~~g~~~~~~~~~~~~~ 360 (453)
+++.+||+..|.++....+|+. ..|...+.+..+ +.++.+++....+ ..+++..++.|+++|..++.....++|+
T Consensus 402 i~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~sel 480 (591)
T PTZ00207 402 VGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTI 480 (591)
T ss_pred HHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHH
Confidence 9999999999999955555442 445555556556 6666666554444 6789999999999999999999999999
Q ss_pred hccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCC-CCccccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 012910 361 FGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGE-GNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKRFY 439 (453)
Q Consensus 361 ~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~-~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~ 439 (453)
|+ ++.|+.+.+..+..-+|+.+++..+.|.++|+...+. +..|+|.+||+.+|++++++++++++....+..|+|+..
T Consensus 481 Fg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r~~y 559 (591)
T PTZ00207 481 FA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYRRLC 559 (591)
T ss_pred hc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehHHHH
Confidence 99 9999999999999999999998899999999887443 348999999999999999999999999999888888876
Q ss_pred HHHHHHH
Q 012910 440 NEVILRR 446 (453)
Q Consensus 440 ~~~~~~~ 446 (453)
++..+||
T Consensus 560 ~~~~~~~ 566 (591)
T PTZ00207 560 LKALEER 566 (591)
T ss_pred HHHHHHH
Confidence 6555444
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=275.27 Aligned_cols=388 Identities=16% Similarity=0.066 Sum_probs=295.8
Q ss_pred ccccHHHHHHHHHHHHhhcC-cccccccchhHHhhcCCCccchhHHHHHHHHhhhhc-chhhhhhhccCCCCCCCCcchh
Q 012910 9 LNTRWVSTVASIWIQCTSGS-LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANTG-TLSGVLYTYSTSDHSSHHPRQQ 86 (453)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~p~~g 86 (453)
++.||.+++..++....... ...|+...|.+.+|.++|.+|++++.+.+.+.+.++ .+.|.++||.+
T Consensus 24 ~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~n----------- 92 (448)
T COG2271 24 KRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSN----------- 92 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCC-----------
Confidence 34455666666666665444 788999999999999999999999999999988887 99999999999
Q ss_pred hhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhhee
Q 012910 87 RLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIM 165 (453)
Q Consensus 87 ~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~ 165 (453)
+|+.+.+++++.++..+++.++ ++.+.+.+..++.|..+|...|++..++.+||| +|||+..++.
T Consensus 93 -------pr~fm~~gLilsai~nil~Gfs-------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siW 158 (448)
T COG2271 93 -------PRYFMAFGLILSAIVNILFGFS-------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIW 158 (448)
T ss_pred -------CceeehHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEe
Confidence 9999999999999999996554 589999999999999999999999999999997 8999999999
Q ss_pred cccCCCCcc--c-c-------cccccCcccchhhhhhhhhcc-----cccCCCCcccCCCCCCCCCCCCcCCcCCCCCCc
Q 012910 166 KGSDSDRTS--E-T-------SFCEEDELTDDPHEMHAEKMH-----VRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDL 230 (453)
Q Consensus 166 ~~~~~~~~~--~-~-------~~~~w~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (453)
++..+++-. + . ...+||..|+.++++..+... .++.|++..-++.++-.++..+...++++.+..
T Consensus 159 n~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~l 238 (448)
T COG2271 159 NTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGL 238 (448)
T ss_pred hhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCc
Confidence 887766321 1 1 125899999998666554333 355554433222111111111100011111112
Q ss_pred c-----HHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhc
Q 012910 231 D-----LLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHV 304 (453)
Q Consensus 231 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~ 304 (453)
+ .+.+++||..|.++++.++.+..-+++..|.|.|+.| .|+|..++....+.+-++++.|.+++||+|||+-+.
T Consensus 239 s~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkg 318 (448)
T COG2271 239 TAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKG 318 (448)
T ss_pred cHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccc
Confidence 2 3457899999999999999999999999999999975 599999999999999999999999999999999653
Q ss_pred cccCchhHHHHHHHHHHHHHHHHH-h--cchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhh
Q 012910 305 KEWARPLFMVITLAAMSIGHLIIA-S--GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGS 381 (453)
Q Consensus 305 ~~~~r~~~~~~~~~~~~i~~~~~~-~--~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 381 (453)
+|.+...+..+...+++..+. . .+.....+..+.+|+...+..-.....+.|..|++..|++.|+...+..+++
T Consensus 319 ---rR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~G 395 (448)
T COG2271 319 ---RRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIG 395 (448)
T ss_pred ---ccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhh
Confidence 344444444454445554444 2 2234555667788887777676667788999999999999999999999944
Q ss_pred hhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012910 382 YIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTK 436 (453)
Q Consensus 382 ~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~ 436 (453)
.+++....|.+.|..| |...|++..+.++++.++.+...+.++
T Consensus 396 a~~a~~~~g~i~d~~g------------W~g~Fi~~~~~a~l~~lll~~~~~~~~ 438 (448)
T COG2271 396 AALAGLPLGYIADTWG------------WDGGFIVLSIAALLAILLLLPVWNAEE 438 (448)
T ss_pred HHhcCCcceeeEecCC------------CcchHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4578888899999877 899999998888888776665554433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=282.50 Aligned_cols=394 Identities=14% Similarity=-0.013 Sum_probs=263.8
Q ss_pred cHHHHHHHHHHHHhh-cCcccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhh
Q 012910 12 RWVSTVASIWIQCTS-GSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLT 89 (453)
Q Consensus 12 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~ 89 (453)
.|.++...++..+.. .....+++..|.+++|+|+|..+.+++.+.+.+++.+ +++.|+++||+|
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g-------------- 92 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKN-------------- 92 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccC--------------
Confidence 444555555544443 3477888999999999999999999888888888875 599999999999
Q ss_pred hccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheeccc
Q 012910 90 RLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGS 168 (453)
Q Consensus 90 ~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~ 168 (453)
+|+++.++.++++++.+++++..++.. ++++.+++.|+++|++++...+...+++.+|+| ++||+++|+...+
T Consensus 93 ----~r~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~ 166 (467)
T PRK09556 93 ----TKQFLPFLLILSAICMLGFGASLGSGS--VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNIS 166 (467)
T ss_pred ----ccchHHHHHHHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecc
Confidence 999999999998888887666434444 589999999999999999999999999999997 7899999999877
Q ss_pred CCCCcccc-----------cccccCcccchhhhhhhhhcc-----cccCCCCcccCCCCC--CCCCCCCcCCcCCCC-CC
Q 012910 169 DSDRTSET-----------SFCEEDELTDDPHEMHAEKMH-----VRQDPVGYHRLPSEP--DVGTDTNDATTSLWG-GD 229 (453)
Q Consensus 169 ~~~~~~~~-----------~~~~w~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~ 229 (453)
.+++.... ...+|+..|............ .++.|++....+.++ ++..+.+++.+++++ ..
T Consensus 167 ~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (467)
T PRK09556 167 HNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTK 246 (467)
T ss_pred cchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcH
Confidence 66632110 012577776655433222111 223332211111100 000000000000000 00
Q ss_pred cc--HHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhh-hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q 012910 230 LD--LLQAICTLEFWILSFAMACGMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKE 306 (453)
Q Consensus 230 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~ 306 (453)
.+ .++.+++|.+|...+..++..........|+|.|++ ++|+|..+++...+...++..++++++|+++||+++
T Consensus 247 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~--- 323 (467)
T PRK09556 247 WQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANG--- 323 (467)
T ss_pred HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
Confidence 11 123789999999998888877777777889999886 479999999999999999999999999999999953
Q ss_pred cCchhHHHHHHHHHHHHH--HHHHh-cchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhh-hhh
Q 012910 307 WARPLFMVITLAAMSIGH--LIIAS-GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPV-GSY 382 (453)
Q Consensus 307 ~~r~~~~~~~~~~~~i~~--~~~~~-~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~ 382 (453)
++.......+..++. +.+.. .+.....+..++.|++...........+.|.+|++++|++.|+.+....+ |+.
T Consensus 324 ---r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~ 400 (467)
T PRK09556 324 ---RRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDS 400 (467)
T ss_pred ---CchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHH
Confidence 333333222222222 22222 23333445555666543333333345677999999999999999988886 554
Q ss_pred hhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHh
Q 012910 383 IFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLF 432 (453)
Q Consensus 383 i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~ 432 (453)
++|.+.|.+.|...++.....+...+|+..|++..++.+++.+..+.+.
T Consensus 401 -~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 449 (467)
T PRK09556 401 -FAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIVA 449 (467)
T ss_pred -HHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999921100000001123399999999888888876666554
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=271.32 Aligned_cols=361 Identities=21% Similarity=0.229 Sum_probs=273.0
Q ss_pred ccHHHHHHHHHHHHhhcCcccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhh
Q 012910 11 TRWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLT 89 (453)
Q Consensus 11 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~ 89 (453)
|+|.+++..+...+..+..+.++++.|.+++|+|+|.++.+++.+.+.++... +++.|++.||+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G-------------- 66 (377)
T TIGR00890 1 RWWYVLVGTVIMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFG-------------- 66 (377)
T ss_pred CeEEEeHHHHHHHHHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcC--------------
Confidence 35666666777777777888999999999999999999999888888888775 599999999999
Q ss_pred hccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcCCCccchhheecccC
Q 012910 90 RLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKGSD 169 (453)
Q Consensus 90 ~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p~~rg~~~g~~~~~~ 169 (453)
||+++.++.++.+++.++++++ ++++.+++.|+++|++.+..++.....+.+|+|++|+++.++...+.
T Consensus 67 ----~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (377)
T TIGR00890 67 ----PRAVAMLGGILYGLGFTFYAIA-------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGY 135 (377)
T ss_pred ----ccchhHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHhc
Confidence 9999999999999999886655 68999999999999999998888888889999999999999998877
Q ss_pred CCCcc---cc-----cccccCcccchhhhhhhhhcc--cccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhh
Q 012910 170 SDRTS---ET-----SFCEEDELTDDPHEMHAEKMH--VRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTL 239 (453)
Q Consensus 170 ~~~~~---~~-----~~~~w~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (453)
+++.. |. ...+||+.|............ ....++++++++ ++++ +..+++.+.++.++++
T Consensus 136 ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------~~~~~~~~~~~~~~~~ 205 (377)
T TIGR00890 136 GLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLI-KTNI---------EVSVKDYTVWEMLRTP 205 (377)
T ss_pred chhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhcc-ccCc---------ccchhhhhHHHHHcCc
Confidence 66432 11 125799888766443332211 111111110000 0000 0001123457788999
Q ss_pred HHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHH
Q 012910 240 EFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAA 319 (453)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~ 319 (453)
+++...+..++..........+.+++.++.|.++.+.+...+...+...+++++.|+++||+ +|++.+..+..+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~------g~~~~~~~~~~~ 279 (377)
T TIGR00890 206 QFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI------GRQKTMSIVFGI 279 (377)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhhhhhhHHHHH
Confidence 99888777666655555555566777788899998999999999999999999999999999 556666667666
Q ss_pred HHHHHHHHHh-cch--hHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheecc
Q 012910 320 MSIGHLIIAS-GLP--GALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDRE 396 (453)
Q Consensus 320 ~~i~~~~~~~-~~~--~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~ 396 (453)
..++.++... ++. ........+.+++.+...+..+.++.|.+|+++++++.|+.+....+|.. ++|.+.|.+.|..
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~-~~~~~~g~l~~~~ 358 (377)
T TIGR00890 280 SAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGI-FGGLIASHALTEI 358 (377)
T ss_pred HHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHH-HHHHHHHHHHhhh
Confidence 6666655542 221 22334456677888877788888999999999999999999999999995 7999999999987
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHH
Q 012910 397 ASGEGNKCTGTHCFMLSFFIMGSATLCGS 425 (453)
Q Consensus 397 g~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 425 (453)
| |+..|.+.+++.+++.
T Consensus 359 g------------~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 359 G------------FEYTFIVTGAFALTSL 375 (377)
T ss_pred c------------hhhHHHHHHHHHHHhc
Confidence 7 7889988887766654
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=266.68 Aligned_cols=350 Identities=9% Similarity=0.028 Sum_probs=257.0
Q ss_pred cccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHH
Q 012910 29 LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFA 107 (453)
Q Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~ 107 (453)
.+..++..|.+++|+|+|.++.+++.+.+.++... +++.|++.||+| ||+++..+..++++
T Consensus 25 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G------------------~r~~l~~~~~l~~~ 86 (393)
T PRK09705 25 LTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVS------------------ERRSVAISLLLIAV 86 (393)
T ss_pred hhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhC------------------chHHHHHHHHHHHH
Confidence 57788999999999999999999887777777765 599999999999 99999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcCCCccchhheecccCCC----Cc--ccc--cc-
Q 012910 108 GYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKGSDSD----RT--SET--SF- 178 (453)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p~~rg~~~g~~~~~~~~----~~--~~~--~~- 178 (453)
+.++++++ ++++.+++.|+++|+|.+..++.....+.+++|++|++++|+..++... +. .+. ..
T Consensus 87 ~~~~~~~a-------~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~ 159 (393)
T PRK09705 87 GALMRELY-------PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWLVQHS 159 (393)
T ss_pred HHHHHHHC-------cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99995544 6899999999999999999999989999999999999999998654322 11 111 11
Q ss_pred cccCcccchhhhhhhhhcccccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhe
Q 012910 179 CEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLAT 258 (453)
Q Consensus 179 ~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (453)
.+||+.+..................++++++ +++ ++ .+.++.+++++.|.+.+..++........
T Consensus 160 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---------~~----~~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 224 (393)
T PRK09705 160 ETWYQTLAWWALPAVVALFAWWWQSAREVAS--SHK---------TT----TTPVRVVFTPRAWTLGVYFGLINGGYASL 224 (393)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCcc--ccC---------CC----cCCcccccCHhHHHHHHHHHHHHHHHHHH
Confidence 4788876554322221111111111111100 000 00 01134567778887777776666666677
Q ss_pred cccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhHHHH
Q 012910 259 VNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYA 337 (453)
Q Consensus 259 ~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~ 337 (453)
..++|.++++.|.+..+++...++.++++.+++++.|++.||+ +|++.+..+..+..++..++. .+.... ..
T Consensus 225 ~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~ 297 (393)
T PRK09705 225 IAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQ------DRRKLLMLALVLQLVGFCGFIWLPLQLP-VL 297 (393)
T ss_pred HHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc------cchHHHHHHHHHHHHHHHHHHHccchHH-HH
Confidence 7889999998999999999999999999999999999999999 566666666666666655443 222111 12
Q ss_pred HHHHHHHhhhhhhhhhHHHHhHhhc-cccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHH
Q 012910 338 GSILVGVCYGSQWSLMPTIASEIFG-VLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFI 416 (453)
Q Consensus 338 ~~~l~g~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~ 416 (453)
...+.|++.+...+.......+..+ ++++++..|+.+....+++. ++|.+.|++.|+.|+ |...|++
T Consensus 298 ~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~-~gp~~~G~l~~~~g~-----------~~~~~~~ 365 (393)
T PRK09705 298 WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAG-LAPWFSGVLRSISGN-----------YLMDWAF 365 (393)
T ss_pred HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCC-----------chHHHHH
Confidence 2345677777777777666677775 56889999999988888885 699999999999886 8889998
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q 012910 417 MGSATLCGSLAAFGLFLRTKR 437 (453)
Q Consensus 417 ~~~~~~~~~i~~~~~~~~~~~ 437 (453)
.+.+.++..++.+.+.++++.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~ 386 (393)
T PRK09705 366 HALCVVGLMIITLRFAPARFP 386 (393)
T ss_pred HHHHHHHHHHHHHHhcccccc
Confidence 888877776666555554443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=266.27 Aligned_cols=382 Identities=14% Similarity=0.084 Sum_probs=268.6
Q ss_pred ccccHHHHHHHHHHHHh-hcCcccccccchhHHhhcCCCccchhHHHHHHHHhhh-hcchhhhhhhccCCCCCCCCcchh
Q 012910 9 LNTRWVSTVASIWIQCT-SGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGAN-TGTLSGVLYTYSTSDHSSHHPRQQ 86 (453)
Q Consensus 9 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~-~~~~~g~l~dr~g~~~~~~~p~~g 86 (453)
..++|.++..+++.... .+..+.++.+.|++++++|+|.++.+++.+.+.+... .+++.|+++||+|
T Consensus 14 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g----------- 82 (455)
T TIGR00892 14 GGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFG----------- 82 (455)
T ss_pred CCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcC-----------
Confidence 35678877777666543 3446778899999999999999999977666655554 5689999999999
Q ss_pred hhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHH-HHHHHHhhhhhHhhhhhHhHhhhcCCCccchhhee
Q 012910 87 RLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCL-FMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIM 165 (453)
Q Consensus 87 ~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~r~l~G~g~~~~~~~~~~~~~~~~p~~rg~~~g~~ 165 (453)
||++++.+.++.+++.++++++ ++++.+++ .|+++|++.+...++....+.+|+|++|++++|+.
T Consensus 83 -------~r~~l~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~r~~a~g~~ 148 (455)
T TIGR00892 83 -------CRPVVIAGGLLASLGMILASFS-------SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFYRRRPLANGLA 148 (455)
T ss_pred -------chHHHHhhHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999999988885544 47777764 67999999998777778888899999999999999
Q ss_pred cccCCCCcc--------cccccccCcccchhhhhhhhhc----ccccCCCCcccCCCCCCC--CCCCCcCC-c--CCCCC
Q 012910 166 KGSDSDRTS--------ETSFCEEDELTDDPHEMHAEKM----HVRQDPVGYHRLPSEPDV--GTDTNDAT-T--SLWGG 228 (453)
Q Consensus 166 ~~~~~~~~~--------~~~~~~w~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~--~~~~~~~~-~--~~~~~ 228 (453)
..+..++.. .....+||+.|........... .....+......+.++++ +.+...++ + ...++
T Consensus 149 ~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (455)
T TIGR00892 149 MAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEK 228 (455)
T ss_pred HhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhh
Confidence 877765321 1122689999987754332111 111111110000000000 00000000 0 00000
Q ss_pred --CccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q 012910 229 --DLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKE 306 (453)
Q Consensus 229 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~ 306 (453)
+....+.+++|+++......++..........+++.+.++.|+++.+++...++.+++.++++++.|+++||...+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~- 307 (455)
T TIGR00892 229 INRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRP- 307 (455)
T ss_pred hhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCH-
Confidence 01112578899999888877776666666677889999889999999999999999999999999999999742211
Q ss_pred cCchhHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhh
Q 012910 307 WARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFS 385 (453)
Q Consensus 307 ~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g 385 (453)
.++..+..+..+.+++.++.. .++.+.+++..++.|++.+...+...+.+.|.+|++++++..|+.+....+|.. ++
T Consensus 308 -~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~-ig 385 (455)
T TIGR00892 308 -HVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVL-IG 385 (455)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHH-cc
Confidence 122333333333334333333 445555667778889999888888889999999999999999999999999996 79
Q ss_pred hhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHH
Q 012910 386 VRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAF 429 (453)
Q Consensus 386 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~ 429 (453)
|.+.|.+.|..++ |+..|++.+++.+++.+...
T Consensus 386 p~i~G~l~~~~g~-----------~~~~f~~~~~~~li~~~~~~ 418 (455)
T TIGR00892 386 PPLAGRLVDATKN-----------YKYIFYASGSIVVSAGLFLA 418 (455)
T ss_pred ccceeeeehhcCC-----------cchHHHHhhHHHHHHHHHHH
Confidence 9999999998765 78889888887777665433
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=264.36 Aligned_cols=391 Identities=15% Similarity=0.100 Sum_probs=257.4
Q ss_pred ccccHHHHHHHHHHHHhhcC-cccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchh
Q 012910 9 LNTRWVSTVASIWIQCTSGS-LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQ 86 (453)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g 86 (453)
++++|.++...++....... ...++...|.+.++ |+|..+.+++.+...++... +++.|+++||+|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g----------- 91 (452)
T PRK11273 24 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSN----------- 91 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccC-----------
Confidence 34456655444444433322 45567788999988 99999999877777777664 699999999999
Q ss_pred hhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhhee
Q 012910 87 RLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIM 165 (453)
Q Consensus 87 ~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~ 165 (453)
+|+++.++.++.+++.+++++. .... .+++.+++.|++.|++.+..++.....+.+|+| ++|++++|+.
T Consensus 92 -------~k~~l~~~~~~~~i~~~~~~~~-~~~~--~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~ 161 (452)
T PRK11273 92 -------PRVFLPAGLILAAAVMLFMGFV-PWAT--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVW 161 (452)
T ss_pred -------CchhHHHHHHHHHHHHHHHHhh-hccc--ccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHH
Confidence 9999999999999988886554 1111 368888899999999999888888888899997 7899999998
Q ss_pred cccCCCCc---ccc------cccccCcccchhhhhhhhhc-----ccccCCCCcccCCCCCCCCCCCCcCCcCCCCCCcc
Q 012910 166 KGSDSDRT---SET------SFCEEDELTDDPHEMHAEKM-----HVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLD 231 (453)
Q Consensus 166 ~~~~~~~~---~~~------~~~~w~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (453)
..+.+++. .+. ...+||+.|........+.. .+++.+++...++. ++.+.+..++.+.+..++.+
T Consensus 162 ~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 240 (452)
T PRK11273 162 NCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPI-EEYKNDYPDDYNEKHEQELT 240 (452)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCCh-hhhhhccccccccccCCCcc
Confidence 66554321 111 12489988877543322211 12222221110000 00000000000000001111
Q ss_pred H-----HHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhcc
Q 012910 232 L-----LQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVK 305 (453)
Q Consensus 232 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~ 305 (453)
. ...+|++.+|...+..++.....+....++|.++++ .|++..+++....+..++..+++++.|+++||++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~- 319 (452)
T PRK11273 241 AKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRG- 319 (452)
T ss_pred HHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-
Confidence 1 236788999998888877777667777899999986 699999999999999999999999999999999542
Q ss_pred ccCchhHHHHHHHHHHHHHHHHH---hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhh
Q 012910 306 EWARPLFMVITLAAMSIGHLIIA---SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSY 382 (453)
Q Consensus 306 ~~~r~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 382 (453)
+|+........+..++..++. ..+.....+...+.|.+...........+.|.+|++.+|++.|+.+....+|+.
T Consensus 320 --r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ 397 (452)
T PRK11273 320 --NRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS 397 (452)
T ss_pred --CcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHH
Confidence 122222222222223322222 122223333344445443332333345677999999999999999988888875
Q ss_pred hhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 012910 383 IFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKR 437 (453)
Q Consensus 383 i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~ 437 (453)
+.+|.+.|.+.|+.| |+..|++.+++++++++....+.+.++|
T Consensus 398 ~~g~~v~g~l~~~~g------------~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 440 (452)
T PRK11273 398 VAASAIVGYTVDFFG------------WDGGFMVMIGGSILAVILLIVVMIGEKR 440 (452)
T ss_pred HhhhhhHHHHHHHhc------------chHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 557889999999987 7999999888888887766666554444
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=264.94 Aligned_cols=382 Identities=18% Similarity=0.184 Sum_probs=301.7
Q ss_pred cccHHHHHHHHHHHHh-hcCcccccccchhHHhhcCCCccchhHHHHHHHHhhh-hcchhhhhhhccCCCCCCCCcchhh
Q 012910 10 NTRWVSTVASIWIQCT-SGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGAN-TGTLSGVLYTYSTSDHSSHHPRQQR 87 (453)
Q Consensus 10 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~-~~~~~g~l~dr~g~~~~~~~p~~g~ 87 (453)
-+.|.+.+.+++..+. .|..+.++++.+.++++++.+.++++|+.+....... .+|+.+.+.||+|
T Consensus 42 G~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg------------ 109 (509)
T KOG2504|consen 42 GWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFG------------ 109 (509)
T ss_pred CeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcC------------
Confidence 3568888888777665 7889999999999999999999999987777665555 5799999999999
Q ss_pred hhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHH-HHHHHHHhhhhhHhhhhhHhHhhhcCCCccchhheec
Q 012910 88 LTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMC-LFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMK 166 (453)
Q Consensus 88 ~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~r~l~G~g~~~~~~~~~~~~~~~~p~~rg~~~g~~~ 166 (453)
.|++.++|.++.++|.++.++ + +++++++ .+.++.|+|.++.+.++..++..||+|||+.|+|+..
T Consensus 110 ------~R~v~i~G~~v~~~g~~lssF-----~--~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~ 176 (509)
T KOG2504|consen 110 ------CRTVMIAGGLVAALGLLLSSF-----A--TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAV 176 (509)
T ss_pred ------chHHHHHHHHHHHHHHHHHHH-----H--hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhh
Confidence 999999999999999999544 4 4787766 6999999999999999999999999999999999999
Q ss_pred ccCCCCcccccc--------cccCcccchhhhhhhhhc--ccccCC-CCcc--c---------------------CCCCC
Q 012910 167 GSDSDRTSETSF--------CEEDELTDDPHEMHAEKM--HVRQDP-VGYH--R---------------------LPSEP 212 (453)
Q Consensus 167 ~~~~~~~~~~~~--------~~w~~~~~~~~~~~~~~~--~l~~~~-~~~~--~---------------------~~~~~ 212 (453)
++.|++...... .|||+.+.....+..-.. .....| .... + ...++
T Consensus 177 ~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (509)
T KOG2504|consen 177 SGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISER 256 (509)
T ss_pred ccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccC
Confidence 999886654332 799999887754432111 111111 0000 0 00000
Q ss_pred CCCCC-------CC--cCCcCCC--CCCccH----HHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhh
Q 012910 213 DVGTD-------TN--DATTSLW--GGDLDL----LQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETS 277 (453)
Q Consensus 213 ~~~~~-------~~--~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~ 277 (453)
++... .+ +.++..+ ..+... .++++++.|+.+.+...+....+.....++|.+.++.|+++.+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa 336 (509)
T KOG2504|consen 257 DSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAA 336 (509)
T ss_pred CCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhH
Confidence 00000 00 0000000 111122 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHH
Q 012910 278 SLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTI 356 (453)
Q Consensus 278 ~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~ 356 (453)
.+.++.++.++++|++.|+++|+... +++.+..++.+..+++.+... ..+.+.+.....++|++.|......+..
T Consensus 337 ~l~Siigi~~i~gRi~~G~laD~~~~----~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i 412 (509)
T KOG2504|consen 337 FLLSIIGVSDIIGRIILGLLADKPGI----RALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVI 412 (509)
T ss_pred HHHHHHHHhhhhhhhhhhhhcCcccc----chHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999853 356666677777777765555 4555677888899999999999888889
Q ss_pred HhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHh
Q 012910 357 ASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLF 432 (453)
Q Consensus 357 ~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~ 432 (453)
+.|+.+.++...++|+..+..+++.. .||++.|.+.|.+++ |...|+..+.+.+++..+.+...
T Consensus 413 ~~~~~g~~~l~~a~Gl~l~~~gi~~l-~gpPiag~~~d~tg~-----------Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 413 LVDLVGLEKLSNAYGLLLLFQGIGAL-VGPPIAGLLYDITGN-----------YDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHcChhhcchHHHHHHHHhHHHHH-cCcccceeeeeccCC-----------eeeehhhcChHHHHHHHHHHHhH
Confidence 99999999999999999999999996 799999999999988 99999999999999886666555
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=245.13 Aligned_cols=367 Identities=15% Similarity=0.092 Sum_probs=278.5
Q ss_pred ccccHHHHHHHHHHHHhhcC-cccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchh
Q 012910 9 LNTRWVSTVASIWIQCTSGS-LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQ 86 (453)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g 86 (453)
+++.|..+....+..++.+. .+....+.|++.+|+|+|..+.|+..+.|.++... +|+...+.||+.
T Consensus 8 ~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~----------- 76 (394)
T COG2814 8 RKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLE----------- 76 (394)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-----------
Confidence 34445555555555666555 67788889999999999999999776777666664 699999999999
Q ss_pred hhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhhee
Q 012910 87 RLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIM 165 (453)
Q Consensus 87 ~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~ 165 (453)
||++++....++.++.++++++ +||+.++++|++.|+..|.+++.......+..| +||+++++++
T Consensus 77 -------Rr~lLl~~l~lFi~~n~l~alA-------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv 142 (394)
T COG2814 77 -------RRRLLLGLLALFIVSNLLSALA-------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALV 142 (394)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHH
Confidence 9999999999999999997766 799999999999999999999999999999996 8999999999
Q ss_pred cccCCCCcc---cc-----cccccCcccchhhhhhhhhcc--cccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHH
Q 012910 166 KGSDSDRTS---ET-----SFCEEDELTDDPHEMHAEKMH--VRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQA 235 (453)
Q Consensus 166 ~~~~~~~~~---~~-----~~~~w~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (453)
.++..++.. |. ...|||..|........+... ....| ++ +.++ +...+..+..+.
T Consensus 143 ~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP----~~--~~~~---------~~~~~~~~~~~~ 207 (394)
T COG2814 143 FTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP----PS--EISG---------SLPGPLRTLLRL 207 (394)
T ss_pred HHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC----Cc--cCCC---------CCCcchhHHHHH
Confidence 888766432 22 238999999887655443332 12222 00 0000 000122345789
Q ss_pred hhhhHHHHHHHHHHhhhcchhhecccHHHhhhhc-CCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHH
Q 012910 236 ICTLEFWILSFAMACGMGSGLATVNNISQIGGSL-GYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMV 314 (453)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~ 314 (453)
+|+|+.+...+..++.....+..++|+.+++++. |+|.+..++....++++..+|+.++|+++|| + .|+. +.
T Consensus 208 l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~-----~~~~-l~ 280 (394)
T COG2814 208 LRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-G-----PRRA-LI 280 (394)
T ss_pred hcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-c-----chhH-HH
Confidence 9999999999999999999999999999988865 9999999999999999999999999999999 3 3333 33
Q ss_pred HHHHHHHHHHHHHH--hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhh
Q 012910 315 ITLAAMSIGHLIIA--SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYI 392 (453)
Q Consensus 315 ~~~~~~~i~~~~~~--~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l 392 (453)
....+..+.++.+. .++.+......++.|+..............+.. +|++..+.++.....++|.. .|..++|.+
T Consensus 281 ~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia-~GA~lGG~v 358 (394)
T COG2814 281 AALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIA-LGAALGGLV 358 (394)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 44344444444433 344444445555566666655555555666633 48889999999888899986 688899999
Q ss_pred eeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012910 393 YDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTK 436 (453)
Q Consensus 393 ~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~ 436 (453)
.|+.| |....+..+.+.+++.++.+...+.++
T Consensus 359 ~~~~g------------~~~~~~~~a~l~~~a~~~~~~~~~~~~ 390 (394)
T COG2814 359 LDALG------------YAATGWVGAALLLLALLLALLSARKDR 390 (394)
T ss_pred HHhhc------------hHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99977 899999999988888877666554433
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-32 Score=262.67 Aligned_cols=379 Identities=13% Similarity=0.022 Sum_probs=254.2
Q ss_pred cHHHHHHHHHHHHhhc-CcccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhh
Q 012910 12 RWVSTVASIWIQCTSG-SLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLT 89 (453)
Q Consensus 12 ~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~ 89 (453)
||.+....++..+... ..+.++...|.+.+++|+|..+.+++.+.+.++... +++.|++.||+|
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g-------------- 86 (434)
T PRK11663 21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSN-------------- 86 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcC--------------
Confidence 4444444444444332 355678889999999999999999877777777765 599999999999
Q ss_pred hccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheeccc
Q 012910 90 RLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGS 168 (453)
Q Consensus 90 ~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~ 168 (453)
+|+++.++.++++++.++++++ ++++.+++.|++.|++.|..++....++.+|+| ++|++++++...+
T Consensus 87 ----~r~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~ 155 (434)
T PRK11663 87 ----ARYFMGIGLIATGIINILFGFS-------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTA 155 (434)
T ss_pred ----CchhHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9999999999999999886554 589999999999999999989999999999997 7899999998766
Q ss_pred CCCCcc--------cccccccCcccchhhhhhhhh---c--ccccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHH--
Q 012910 169 DSDRTS--------ETSFCEEDELTDDPHEMHAEK---M--HVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLL-- 233 (453)
Q Consensus 169 ~~~~~~--------~~~~~~w~~~~~~~~~~~~~~---~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 233 (453)
.+++.. .....+||+.|.......... . .+++.|++...++.++.+++..+.+ ++.+.+..+.+
T Consensus 156 ~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 234 (434)
T PRK11663 156 HNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELA-QQQEGAGLSRKEI 234 (434)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccc-hhccccCCChhhh
Confidence 544221 112368999987764432211 1 1222221111011000000000000 00000111122
Q ss_pred ---HHhhhhHHHHHHHHHHhhhcchhhecccHHHhhh-hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCc
Q 012910 234 ---QAICTLEFWILSFAMACGMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWAR 309 (453)
Q Consensus 234 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r 309 (453)
..++++.+|...+..++.......+..++|.+++ +.|++..+++...+...+++.+++++.|+++||+.++ +|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~---~r 311 (434)
T PRK11663 235 LTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNG---NR 311 (434)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccC---Cc
Confidence 2567888888887777766666667778899985 5799999999999999999999999999999999544 23
Q ss_pred hhHHH---HHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhh
Q 012910 310 PLFMV---ITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSV 386 (453)
Q Consensus 310 ~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~ 386 (453)
+.... .+.....+........+........+..|++.............|.+|+++++++.|+.+....+|.. ++|
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~-~~p 390 (434)
T PRK11663 312 GPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAA-LSG 390 (434)
T ss_pred cHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHH-Hhc
Confidence 32211 12222222222222222222222233334332222233445678999999999999999999999995 799
Q ss_pred hhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHh
Q 012910 387 RVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLF 432 (453)
Q Consensus 387 ~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~ 432 (453)
++.|.+.|+.| |+..|+..+++.+++++..+...
T Consensus 391 ~~~g~l~~~~g------------~~~~f~~~~~~~~~~~~~~~~~~ 424 (434)
T PRK11663 391 YPLAKVLEIWH------------WTGFFVVISIAAGISALLLLPFL 424 (434)
T ss_pred ccHHHHHHhcc------------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999877 79999998888888765554433
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-32 Score=260.32 Aligned_cols=372 Identities=12% Similarity=-0.002 Sum_probs=266.8
Q ss_pred hhhccccHHHHHHHHHHHHhhcC-cccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCc
Q 012910 6 QLRLNTRWVSTVASIWIQCTSGS-LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHP 83 (453)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p 83 (453)
.++.+++|.++..+.+..+..+. .+..++..|.+.+|+|+|+++.+++.+...++... +++.|++.||+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g-------- 78 (406)
T PRK11551 7 SASSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIG-------- 78 (406)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------
Confidence 34566888888888777777665 67788899999999999999999888888888775 599999999999
Q ss_pred chhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchh
Q 012910 84 RQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAV 162 (453)
Q Consensus 84 ~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~ 162 (453)
||+++.++.++..++.+++.+. ++++.+++.|+++|++.+...+....++.|++| ++|++++
T Consensus 79 ----------~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~ 141 (406)
T PRK11551 79 ----------RKRILIVSVALFGLFSLATAQA-------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAV 141 (406)
T ss_pred ----------CchhHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 9999999998888888775443 589999999999999999999999999999997 8899999
Q ss_pred heecccCCCCc--------ccccccccCcccchhhhhhhhhc--ccccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccH
Q 012910 163 GIMKGSDSDRT--------SETSFCEEDELTDDPHEMHAEKM--HVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDL 232 (453)
Q Consensus 163 g~~~~~~~~~~--------~~~~~~~w~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (453)
++...+..++. ......+|++.|........... .....++..+.++++.++ + + ++...
T Consensus 142 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~---~---~~~~~ 210 (406)
T PRK11551 142 SLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAG-----K---Q---RAPVL 210 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcc-----h---h---hhhhH
Confidence 99876554421 11223678887766543222211 111122211110000000 0 0 00011
Q ss_pred HHHhh---hhHHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCc
Q 012910 233 LQAIC---TLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWAR 309 (453)
Q Consensus 233 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r 309 (453)
+..++ .+..+..+...++.....+....++|.+.++.|+++.+.+...+...++..+++++.|+++||+ +|
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~------g~ 284 (406)
T PRK11551 211 RALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL------RP 284 (406)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH------hH
Confidence 12222 2233344444444444455566778999999999999999999999999999999999999999 55
Q ss_pred hhHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhh
Q 012910 310 PLFMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRV 388 (453)
Q Consensus 310 ~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~ 388 (453)
++.+..+.+...++.+.+. .++.+.+.+..++.|++.+...+....++.|.+|+++++++.|+.+....+|.. ++|.+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~-~g~~~ 363 (406)
T PRK11551 285 RRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSM-AGPLL 363 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHH-HHhhh
Confidence 5555555555555554444 344445555667778877777888889999999999999999999999999996 79999
Q ss_pred hhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 012910 389 VGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGL 431 (453)
Q Consensus 389 ~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~ 431 (453)
.|.+.|+.++ +...++....+.+++.++.+..
T Consensus 364 ~g~l~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 364 AGQLLALGRS-----------TVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred HhhhhccCCc-----------hHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998665 6777777766666665554433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.3e-31 Score=253.41 Aligned_cols=361 Identities=9% Similarity=-0.009 Sum_probs=259.1
Q ss_pred ccccHHHHHHHHHHHHhh-cCcccccccchhHHhhcCCCccchhHHHHHHHHhhh-hcchhhhhhhccCCCCCCCCcchh
Q 012910 9 LNTRWVSTVASIWIQCTS-GSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGAN-TGTLSGVLYTYSTSDHSSHHPRQQ 86 (453)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~-~~~~~g~l~dr~g~~~~~~~p~~g 86 (453)
++++|..+....+..+.. ...+....+.|.+++|+|.|.++.+++.+.+.++.. .+++.|++.||+|
T Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g----------- 72 (390)
T PRK03545 4 RKVAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVE----------- 72 (390)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-----------
Confidence 345665444434433332 223445566799999999999999987777776665 5689999999999
Q ss_pred hhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhhee
Q 012910 87 RLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIM 165 (453)
Q Consensus 87 ~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~ 165 (453)
||+++..+.++.++++++++++ ++++.+++.|+++|++.+...+...+++.|++| ++|++++|+.
T Consensus 73 -------~r~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~ 138 (390)
T PRK03545 73 -------RRKLLIGLFVLFIASHVLSALA-------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLL 138 (390)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHH
Confidence 9999999999999999986554 699999999999999999888999999999997 8999999998
Q ss_pred cccCCCCcc--c------ccccccCcccchhhhhhhhhccc--ccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHH
Q 012910 166 KGSDSDRTS--E------TSFCEEDELTDDPHEMHAEKMHV--RQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQA 235 (453)
Q Consensus 166 ~~~~~~~~~--~------~~~~~w~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (453)
..+.+++.. | ....+||+.|........+...+ ...|+.+ + +++ ....+.++.
T Consensus 139 ~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~--~---~~~------------~~~~~~~~~ 201 (390)
T PRK03545 139 ATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLP--S---EHS------------GSLKSLPLL 201 (390)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCC--C---CCc------------chHHHHHHH
Confidence 766654211 1 12268999887765443322211 1112110 0 000 011245678
Q ss_pred hhhhHHHHHHHHHHhhhcchhhecccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHH
Q 012910 236 ICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMV 314 (453)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~ 314 (453)
+|+|.++......++..........++++++++ .|.|..+++...+..++++++++++.|+++||+ +|+...
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~------~~~~~~- 274 (390)
T PRK03545 202 FRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH------PSGFLL- 274 (390)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc------chhHHH-
Confidence 899988876665555544444445667777765 699999999999999999999999999999998 444443
Q ss_pred HHHHHHHHHHHHH-H-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhh
Q 012910 315 ITLAAMSIGHLII-A-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYI 392 (453)
Q Consensus 315 ~~~~~~~i~~~~~-~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l 392 (453)
.+..+...+...+ . .++.+.+.+..++.|++.+...+.....+.+..| ++++++.|+.+....+|.. .||.+.|.+
T Consensus 275 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~-~G~~~~G~~ 352 (390)
T PRK03545 275 IAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIG-AGALLGNQV 352 (390)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3333333333322 2 3444555666777888877766667777778766 6889999999888888886 699999999
Q ss_pred eeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHh
Q 012910 393 YDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLF 432 (453)
Q Consensus 393 ~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~ 432 (453)
.|+.| ++..|.+.+++.+++++......
T Consensus 353 ~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 353 SLHLG------------LSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HhccC------------hhHHHHHHHHHHHHHHHHHHHHc
Confidence 99987 79999999888888876654443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-31 Score=256.11 Aligned_cols=369 Identities=12% Similarity=0.002 Sum_probs=251.3
Q ss_pred cccHHHHHHHHHHHHhhcC-cccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhh
Q 012910 10 NTRWVSTVASIWIQCTSGS-LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQR 87 (453)
Q Consensus 10 ~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~ 87 (453)
|.+|.++...++...+... ....+...|.+++|+|+|..+++++.+.+.+++.+ +++.|++.||+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G------------ 71 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIG------------ 71 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC------------
Confidence 4467666666666555444 67778888999999999999999887778777765 599999999999
Q ss_pred hhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheec
Q 012910 88 LTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMK 166 (453)
Q Consensus 88 ~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~ 166 (453)
||+++.++.++.+++.++++++ ++++.+++.|+++|++.+...+....++.||+| ++|+++++++.
T Consensus 72 ------~r~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~ 138 (412)
T TIGR02332 72 ------ARRWIAGIMVLWGIASTATMFA-------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFM 138 (412)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 9999999999999999996554 689999999999999999999988899999998 78999999997
Q ss_pred ccCCCCc--------cc------ccccccCcccchhhhhhhhh-----cccccCCCCcccCCCCCCC--------CCCCC
Q 012910 167 GSDSDRT--------SE------TSFCEEDELTDDPHEMHAEK-----MHVRQDPVGYHRLPSEPDV--------GTDTN 219 (453)
Q Consensus 167 ~~~~~~~--------~~------~~~~~w~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~--------~~~~~ 219 (453)
.+.+++. .. ....+||+.|........+. ..+++.|++....++++++ +..+.
T Consensus 139 ~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~ 218 (412)
T TIGR02332 139 IAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTL 218 (412)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccc
Confidence 6654411 01 01258999998764433221 1123333221100000000 00000
Q ss_pred cCCcCC-CCCC----ccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhhc--CCChhhhhHHHHHHHHHHHHHhh
Q 012910 220 DATTSL-WGGD----LDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSL--GYSSFETSSLISLWSIWNFLGRF 292 (453)
Q Consensus 220 ~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~s~~~~~~~~~~~~i~~~ig~~ 292 (453)
+++++. .+.. ..+++ ++++.+|...+.+++.......+..++|.++++. |.+..+++.......++..++++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l 297 (412)
T TIGR02332 219 EQPEGAFAHAAMPQRSMLRE-IFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMI 297 (412)
T ss_pred cccccccccccccHHHHHHH-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHH
Confidence 000000 0001 11233 3467888888887777777777888999999875 67888999999999999999999
Q ss_pred hhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhh
Q 012910 293 GAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFN 371 (453)
Q Consensus 293 ~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g 371 (453)
+.|+++||+++ |+........+..+++.+.. ..+.........+.+++.....+.......|.+|+++++++.|
T Consensus 298 ~~g~l~dr~~~-----r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g 372 (412)
T TIGR02332 298 WWSRHSDRLKE-----RKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIA 372 (412)
T ss_pred HHHHHhcccCc-----cHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHH
Confidence 99999999953 23223333333333333222 2222222222222233332233334445567889999999999
Q ss_pred hhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHH
Q 012910 372 TITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSAT 421 (453)
Q Consensus 372 ~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~ 421 (453)
+.+....+|+. ++|.+.|.+.|..|+ |+..+.+.+++.
T Consensus 373 ~~~~~~~~g~~-~~p~~~g~i~~~~g~-----------~~~~~~~~~~~~ 410 (412)
T TIGR02332 373 VINATGNIGSA-LSPFLIGILKDATGS-----------FNSGLWFVAALL 410 (412)
T ss_pred HHHHhhhhhhh-hhhhhcccccccCCC-----------CchhHHHHHHHH
Confidence 99999999995 799999999999876 888887766543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.1e-31 Score=251.29 Aligned_cols=367 Identities=10% Similarity=0.024 Sum_probs=260.6
Q ss_pred cccHHHHHHHHHHHHhhcC-cccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhh
Q 012910 10 NTRWVSTVASIWIQCTSGS-LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQR 87 (453)
Q Consensus 10 ~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~ 87 (453)
.+||.+...+.+..+..+. .+.++...|++++++|+|.++.+++.+...++..+ ++++|++.||+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g------------ 70 (394)
T PRK03699 3 SNRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIP------------ 70 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------
Confidence 4556665565555555544 67789999999999999999999877777777775 489999999999
Q ss_pred hhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheec
Q 012910 88 LTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMK 166 (453)
Q Consensus 88 ~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~ 166 (453)
||+++..+.++.+++.++++++ ++++.+++.|+++|++.+...+.....+.+++| ++|+++++...
T Consensus 71 ------~r~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~ 137 (394)
T PRK03699 71 ------LKRQLIFGFALMILAVAGLMFS-------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTD 137 (394)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHc-------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHH
Confidence 9999999999999998885443 588999999999999999888888889999997 68999888765
Q ss_pred ccCCCC--ccc-------ccccccCcccchhhhhhhhhcccccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhh
Q 012910 167 GSDSDR--TSE-------TSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAIC 237 (453)
Q Consensus 167 ~~~~~~--~~~-------~~~~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (453)
...+++ ..| ....+||+.|............+....+.+++++ ++++ ++ ++. . ++ ..
T Consensus 138 ~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~p~~~~-~~~~----~~--~~~--~----~~-~~ 203 (394)
T PRK03699 138 SFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLFSEFPALGK-HAPK----AD--KPV--A----KE-KW 203 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhcCCccccc-cCcc----cc--Ccc--c----cc-cC
Confidence 443321 111 1236899988766443332222111111000000 0000 00 000 0 01 12
Q ss_pred hhHHHHHHHHHHhhhcchhhecccHHHhhh-hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHH
Q 012910 238 TLEFWILSFAMACGMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVIT 316 (453)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~ 316 (453)
++.++...+..++.......+..++|.+++ +.|+|+.+++...+...++..+++++.|+++||+ ++++.+...
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~------~~~~~l~~~ 277 (394)
T PRK03699 204 GIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF------DLQRILTVL 277 (394)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh------chhhHHHHH
Confidence 456676666666666666677788999996 4699999999999999999999999999999999 555555555
Q ss_pred HHHHHHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheec
Q 012910 317 LAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDR 395 (453)
Q Consensus 317 ~~~~~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~ 395 (453)
..+..+...++. .++.....+..++.|++.+..++.......|..| ++++...|..+....+|.. ++|.+.|.+.|.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~-i~p~~~G~l~~~ 355 (394)
T PRK03699 278 AGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTM-LTFVVTSPIVAH 355 (394)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHH-HHHHHHHHHHHH
Confidence 555555544443 3444455556677788888778877777777766 5567888888888889985 799999999998
Q ss_pred cCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012910 396 EASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRT 435 (453)
Q Consensus 396 ~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~ 435 (453)
.| ++..++..+++.+++.+..+...+..
T Consensus 356 ~g------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (394)
T PRK03699 356 FG------------LQAALLTANGLYAVVFVMCILLGFVS 383 (394)
T ss_pred hC------------chhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 77 68888888888777766555554433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=250.65 Aligned_cols=368 Identities=10% Similarity=-0.063 Sum_probs=234.9
Q ss_pred hhccccHHHHHHHHHHHHhhcC-cccccccchhHHhhcC---CCccchhHHHH---HHHHhhhh-cchhhhhhhccCCCC
Q 012910 7 LRLNTRWVSTVASIWIQCTSGS-LYTFSIYSPALKTTQH---YDQTTLDTVSV---FKDIGANT-GTLSGVLYTYSTSDH 78 (453)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~---~s~~~~~~i~~---~~~~~~~~-~~~~g~l~dr~g~~~ 78 (453)
+.+++++..++.+.+..+.... ...++...|.+.+|++ .+..+.+.+.. ...++... ++++|+++||+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~G--- 91 (432)
T PRK10406 15 SDTRRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHG--- 91 (432)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 3455666666666555555444 5668888899999985 44554433222 22333334 488999999999
Q ss_pred CCCCcchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCH--------HHHHHHHHHHHhhhhhHhhhhhHhH
Q 012910 79 SSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPV--------PVMCLFMLFAAHGMTFFNTADVVTS 150 (453)
Q Consensus 79 ~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~l~~~r~l~G~g~~~~~~~~~~~~ 150 (453)
||+++.++.+++++++++++++ +++ ..+++.|+++|++.|..++...+++
T Consensus 92 ---------------rr~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i 149 (432)
T PRK10406 92 ---------------RKKSMLISVCMMCFGSLVIACL-------PGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYM 149 (432)
T ss_pred ---------------cHHHHHHHHHHHHHHHHHHhhc-------CCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHH
Confidence 9999999999999999995544 344 3688999999999999999999999
Q ss_pred hhhcC-CCccchhheecccCCCC----c-----cc-------ccccccCcccchhhhhhhhhcccccCCCCcccCCCCCC
Q 012910 151 VRNFP-TYSGTAVGIMKGSDSDR----T-----SE-------TSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPD 213 (453)
Q Consensus 151 ~~~~p-~~rg~~~g~~~~~~~~~----~-----~~-------~~~~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 213 (453)
.|++| ++||++.++...+...+ . .. ....+||..|........+...+....++. + +.+
T Consensus 150 ~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~-~---~~~ 225 (432)
T PRK10406 150 SEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDET-S---QQE 225 (432)
T ss_pred HHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCC-c---hHH
Confidence 99997 89999888764433221 0 00 124689999976544333322222111111 0 000
Q ss_pred CCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhh-hcchhhecccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHh
Q 012910 214 VGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACG-MGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGR 291 (453)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~ 291 (453)
+ +. + .+..++++++++++++...+...+. ....+.+..++|.++++ .|++..+.+...++..+...++.
T Consensus 226 ~--~~----~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~ 296 (432)
T PRK10406 226 T--RA----L---KEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQ 296 (432)
T ss_pred H--hh----h---cccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 00 0 1123567888999888776655543 44555677889998864 69999899998888888889999
Q ss_pred hhhhhhhhhhhhccccCchhHHHHHHHHHHHHHH-H-H-Hh--cchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccc
Q 012910 292 FGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHL-I-I-AS--GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQM 366 (453)
Q Consensus 292 ~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~-~-~-~~--~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~ 366 (453)
++.|+++||+ +||+.+....++..+... . . .. .+.........+..+..+...+....+..|.+|++.|
T Consensus 297 ~~~G~l~Dr~------grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r 370 (432)
T PRK10406 297 PLIGALSDKI------GRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVR 370 (432)
T ss_pred HHHHHHHHHc------CchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcc
Confidence 9999999999 444444444333222221 1 1 11 1222222222222233344445566788999999999
Q ss_pred cchhhhhhhhhhh-hhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 012910 367 GTIFNTITIANPV-GSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGL 431 (453)
Q Consensus 367 g~~~g~~~~~~~~-g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~ 431 (453)
+++.|+.+....+ .+. ..|.+.+. .+..|. |...++..+++.+++.+..+++
T Consensus 371 ~t~~g~~~~~g~~~~g~-~~p~~~~~-l~~~g~-----------~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 371 ALGVGLSYAVANALFGG-SAEYVALS-LKSIGM-----------ETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred chhhhHHHHHHHHHHHh-HHHHHHHH-HHHhCC-----------CcHHHHHHHHHHHHHHHHHHHh
Confidence 9999999865443 232 36766664 465564 5666666666666666555543
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=251.58 Aligned_cols=354 Identities=12% Similarity=0.004 Sum_probs=243.0
Q ss_pred cccHHHHHHHHHHHHhhcC-cccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhh
Q 012910 10 NTRWVSTVASIWIQCTSGS-LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQR 87 (453)
Q Consensus 10 ~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~ 87 (453)
+.+|..++.+.+..+..+. ....+...|.+++|+|+|+.+.+++.+.+.++..+ +++.|++.||+|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g------------ 81 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFG------------ 81 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------
Confidence 3455555555566555555 45567788999999999999999888888888775 599999999999
Q ss_pred hhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheec
Q 012910 88 LTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMK 166 (453)
Q Consensus 88 ~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~ 166 (453)
||+++.++.++.+++.++++++ ++++.+++.|+++|++.+..++....++.|++| ++|++++++..
T Consensus 82 ------~r~~l~~~~~~~~~~~~~~~~~-------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~ 148 (426)
T PRK12307 82 ------RKPLMMWSIVAYSVGTGLSGLA-------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLV 148 (426)
T ss_pred ------ChHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHH
Confidence 9999999999999999886554 589999999999999999999999999999997 78999999987
Q ss_pred ccCCCCcc--------cccccccCcccchhhhhhhhhcccc-cCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhh
Q 012910 167 GSDSDRTS--------ETSFCEEDELTDDPHEMHAEKMHVR-QDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAIC 237 (453)
Q Consensus 167 ~~~~~~~~--------~~~~~~w~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (453)
.+.+++.. .....+||+.|............+. ..|++.+.++++.+++ ++ +++........+.++.++
T Consensus 149 ~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~ 226 (426)
T PRK12307 149 SGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGK-GK-HSQSAWSVFSLSMKGLFN 226 (426)
T ss_pred HHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhcc-cc-ccccchhhhhHHHHHHHh
Confidence 77665321 1123689988865432222211121 1122111000000000 00 000000111225677888
Q ss_pred hhHHHHHHHHHH---hhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHH
Q 012910 238 TLEFWILSFAMA---CGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMV 314 (453)
Q Consensus 238 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~ 314 (453)
++.++....... ...........++|.++++.|.++.+.+...+...++..+++++.|++.||+ +|++.+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~------~~~~~~~ 300 (426)
T PRK12307 227 RAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI------GLKKTFS 300 (426)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------ccHHHHH
Confidence 888765443322 2222223345678888888899999999999999999999999999999999 5666666
Q ss_pred HHHHHHHHHHHHHH-hcchhHHHHHHHHHHHh--hhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhh
Q 012910 315 ITLAAMSIGHLIIA-SGLPGALYAGSILVGVC--YGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGY 391 (453)
Q Consensus 315 ~~~~~~~i~~~~~~-~~~~~~~~~~~~l~g~~--~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~ 391 (453)
.+.++..+..+.+. ........+...+++.+ ..+..+..+..+.|.+|++++|++.|+.+....+++. ++|.+.|.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~-~gp~~~g~ 379 (426)
T PRK12307 301 IGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGT-FNSMAATW 379 (426)
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHH-HHHHHHHH
Confidence 66665555544433 22222222223333332 2233455667889999999999999999988888885 79999999
Q ss_pred heeccC
Q 012910 392 IYDREA 397 (453)
Q Consensus 392 l~~~~g 397 (453)
+.|..+
T Consensus 380 l~~~~g 385 (426)
T PRK12307 380 LGITMG 385 (426)
T ss_pred HHHccc
Confidence 999876
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=253.51 Aligned_cols=373 Identities=10% Similarity=0.009 Sum_probs=236.0
Q ss_pred HHHHHHHHHHHHhhcC-cccccccchhHHhhcCCCccch-hHH-----HHHHHHhhhh-cchhhhhhhccCCCCCCCCcc
Q 012910 13 WVSTVASIWIQCTSGS-LYTFSIYSPALKTTQHYDQTTL-DTV-----SVFKDIGANT-GTLSGVLYTYSTSDHSSHHPR 84 (453)
Q Consensus 13 ~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~s~~~~-~~i-----~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~ 84 (453)
+.+++.+.+..+..++ ...++...|.+.++++.+.++. +++ .+...++..+ +++.|+++||+|
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~G--------- 85 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYG--------- 85 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------
Confidence 3444555555555554 5567778899999987544332 222 2344455554 589999999999
Q ss_pred hhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHH--------HHHHHHHHHhhhhhHhhhhhHhHhhhcC-
Q 012910 85 QQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPV--------MCLFMLFAAHGMTFFNTADVVTSVRNFP- 155 (453)
Q Consensus 85 ~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~g~~~~~~~~~~~~~~~~p- 155 (453)
||+++.++.+++++++++++++ +++.. +++.|+++|+|.|..++....++.||+|
T Consensus 86 ---------rr~~l~~~~~l~~i~~~~~a~~-------~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~ 149 (490)
T PRK10642 86 ---------RQKILAITIVIMSISTFCIGLI-------PSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPD 149 (490)
T ss_pred ---------cHHHHHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCC
Confidence 9999999999999999995544 57654 7899999999999999999999999997
Q ss_pred CCccchhheecccCCCC----c---------cc---ccccccCcccchhhhhhhhhcccc-cCCCCcccC-CCCCCCCCC
Q 012910 156 TYSGTAVGIMKGSDSDR----T---------SE---TSFCEEDELTDDPHEMHAEKMHVR-QDPVGYHRL-PSEPDVGTD 217 (453)
Q Consensus 156 ~~rg~~~g~~~~~~~~~----~---------~~---~~~~~w~~~~~~~~~~~~~~~~l~-~~~~~~~~~-~~~~~~~~~ 217 (453)
++||++.++...+..++ . .+ ....+||+.|.+......+...+. ..++..... ..++.++.+
T Consensus 150 ~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~ 229 (490)
T PRK10642 150 RKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGD 229 (490)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhc
Confidence 89999988876443221 0 00 123789999977543222211121 222211000 000000000
Q ss_pred CCcCCcCCCCCCccHHHHhhh-hHHHHHH-HHHHhhhcchhhecccHHHhhh-hcCCChhhhhHHHHHHHHHHHHHhhhh
Q 012910 218 TNDATTSLWGGDLDLLQAICT-LEFWILS-FAMACGMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGA 294 (453)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~i~~~ig~~~~ 294 (453)
.+ ...+.++.++++++++ ++.+... ...++.....+.+..++|.+++ ++|++..+.....+...++..++.++.
T Consensus 230 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~ 306 (490)
T PRK10642 230 RE---GLQDGPKVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVM 306 (490)
T ss_pred cc---cccccccCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000122345666653 2323222 2223333455566778999886 569998888888888889999999999
Q ss_pred hhhhhhhhhccccCchhHHHHHHHHHHH-HHH--HHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchh
Q 012910 295 GYVSDYFLHVKEWARPLFMVITLAAMSI-GHL--IIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIF 370 (453)
Q Consensus 295 G~l~Dr~~~~~~~~r~~~~~~~~~~~~i-~~~--~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~ 370 (453)
|+++||+ +||+.+..+.++..+ +.. ... .++...+.+..++.+++.+...+....++.|.+|++.|+++.
T Consensus 307 g~l~dr~------grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~ 380 (490)
T PRK10642 307 GLLSDRF------GRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSAL 380 (490)
T ss_pred HHHHHHh------ccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHH
Confidence 9999999 566666555543222 222 122 223334445556667777766777778889999999999999
Q ss_pred hhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 012910 371 NTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGL 431 (453)
Q Consensus 371 g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~ 431 (453)
|+.+....+++. ++|.+.+.+.+..++ |...++...+..+++++..+++
T Consensus 381 g~~~~~~~~~g~-~~p~i~g~l~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~ 429 (490)
T PRK10642 381 AAAFNISVLVAG-LTPTLAAWLVESTQN-----------LMMPAYYLMVVAVIGLITGVTM 429 (490)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhCC-----------chHHHHHHHHHHHHHHHHHHHh
Confidence 975544445553 588889998886554 4555555555666665555544
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=252.10 Aligned_cols=359 Identities=14% Similarity=0.076 Sum_probs=240.0
Q ss_pred cccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHH
Q 012910 29 LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFA 107 (453)
Q Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~ 107 (453)
.+.++++.|.+.+|+|+|..+.+++.+.+.+++.. +++.|++.||+| ||+++..+.+++++
T Consensus 52 ~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G------------------~r~~~~~~~~~~~~ 113 (476)
T PLN00028 52 TFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYG------------------PRYGSAFLLMLTAP 113 (476)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------------ChHHHHHHHHHHHH
Confidence 56677888999999999999999877777777775 499999999999 99999999999998
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCC----Cc--ccc----
Q 012910 108 GYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSD----RT--SET---- 176 (453)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~----~~--~~~---- 176 (453)
+.++++++ ++++.+++.|+++|++.+.. .....++.+|+| ++||+++|+......+ +. .+.
T Consensus 114 ~~~~~~~~-------~s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~ 185 (476)
T PLN00028 114 AVFCMSLV-------SSATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPL 185 (476)
T ss_pred HHHHHHHh-------cCHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88875544 58888889999999998864 445667889997 7999999997543222 11 111
Q ss_pred -------cccccCcccchhhhhhhhhccc-ccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHH
Q 012910 177 -------SFCEEDELTDDPHEMHAEKMHV-RQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAM 248 (453)
Q Consensus 177 -------~~~~w~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (453)
...+||+.|.+...+..+...+ ...+++. ++...++.+.+. + .++......+++.++++++|.+.+.+
T Consensus 186 ~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~-p~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (476)
T PLN00028 186 IKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDL-PDGNYRELKKSG-T--MPKDSFSKVLRYGVTNYRTWILALTY 261 (476)
T ss_pred HHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcC-CCCchhhHHhcC-c--cccccHHHHHHHHHcCchhHHHHHHH
Confidence 1147999998775544322211 1111111 110000000000 0 00001112345678889998888777
Q ss_pred HhhhcchhhecccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhcccc-CchhHHHHHHHHHHHHHHH
Q 012910 249 ACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEW-ARPLFMVITLAAMSIGHLI 326 (453)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~-~r~~~~~~~~~~~~i~~~~ 326 (453)
++.......+.+++|.++.+ .|++..+++...++..+++.++++++|+++||+++|+.. +|+........+..+..++
T Consensus 262 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~ 341 (476)
T PLN00028 262 GYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIW 341 (476)
T ss_pred HHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHH
Confidence 66666556667778888764 699999999999999999999999999999999876531 2344444444444443343
Q ss_pred HH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccc
Q 012910 327 IA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCT 405 (453)
Q Consensus 327 ~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~ 405 (453)
+. ..+.....+..++.+++.+...+...+++.+..| +++|++.|+.+.+..+|+. ++|.+.+ .+..++
T Consensus 342 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~-i~~~l~~--~~~~~~------- 410 (476)
T PLN00028 342 LGRANSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAV-LTQLLFF--TGSSYS------- 410 (476)
T ss_pred hcccchHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHH-HHHHHHH--hcCCcc-------
Confidence 33 2233333344455566555555555555666544 7899999999888888885 3554433 111222
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHh
Q 012910 406 GTHCFMLSFFIMGSATLCGSLAAFGLF 432 (453)
Q Consensus 406 ~~~~~~~~f~~~~~~~~~~~i~~~~~~ 432 (453)
|+..|++.+++.+++.++.++.+
T Consensus 411 ----y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 411 ----TETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred ----HhhHHHHHHHHHHHHHHHHHhee
Confidence 89999999888888877766654
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-30 Score=241.56 Aligned_cols=342 Identities=11% Similarity=0.006 Sum_probs=235.1
Q ss_pred ccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHH
Q 012910 30 YTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAG 108 (453)
Q Consensus 30 ~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~ 108 (453)
..++...|.+++|+|+|..|.+++.+.+.+++.. +++.|++.||+| ||+++..+......+
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~g------------------rr~~~~~~~~~~~~~ 69 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAF------------------KRWFLFGSLATFAAA 69 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc------------------chHHHHHHHHHHHHH
Confidence 4567888999999999999999888887777765 599999999999 888876555444443
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCc--------cccccc
Q 012910 109 YFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRT--------SETSFC 179 (453)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~--------~~~~~~ 179 (453)
.... ... ++++.+++.|+++|+|++. .......++||+| ++|++++++...+.+++. ......
T Consensus 70 ~~~~-----~~~--~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~ 141 (368)
T TIGR00903 70 AGRL-----LDP--FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAG 141 (368)
T ss_pred HHHH-----HHh--ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3221 111 4899999999999999996 5566666789997 899999999977665522 111237
Q ss_pred ccCcccchhhhhhhhhcc--cccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhh
Q 012910 180 EEDELTDDPHEMHAEKMH--VRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLA 257 (453)
Q Consensus 180 ~w~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (453)
+||+.|.....+..+... ....|+..+. +++.. + .+ +...++++++++|.+|.+.+..++.....+.
T Consensus 142 gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~----~~~~~---~--~~--~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 210 (368)
T TIGR00903 142 GLQLLIIPIAAVAAAGIILVLAALPALPFQ----AAEGF---G--FK--DAVKEFGALAGRKDLWIIGAILGFGVALFDN 210 (368)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcCCCCCC----CCCCc---c--hH--HHHHHHHHHHcChhHHHHHHHHHHHHHHHHH
Confidence 999998776444332221 1122221110 00000 0 00 0112467899999999999999999898889
Q ss_pred ecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhHHH
Q 012910 258 TVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALY 336 (453)
Q Consensus 258 ~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~ 336 (453)
+.+|+|.++++.|++.. .+...++..+.+.++ .++++||..||. .|+........+.++....+. ..+.....
T Consensus 211 ~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~--~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 284 (368)
T TIGR00903 211 LAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAG--LRSIYIRAAALLIAAFFLALAFELNRLALF 284 (368)
T ss_pred HHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhh--hHHHHHHHHHHHHHHHHHHHHHccccHHHH
Confidence 99999999998888864 566655555555554 588999986552 223323323333344433333 22333334
Q ss_pred HHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHH
Q 012910 337 AGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFI 416 (453)
Q Consensus 337 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~ 416 (453)
....+.+++....++...++.+|.+|++.|+++.|+.+....+++. .+|++.+.+.. + .+..|.+
T Consensus 285 ~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~-~~~~~~~~~~~--~------------~~~~f~~ 349 (368)
T TIGR00903 285 AFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISV-ALALAAMLFIS--S------------AEAYFTF 349 (368)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHH-HHHHHHHHHhc--C------------HHHHHHH
Confidence 4445566666667777888999999999999999999999999985 67878877763 3 5778888
Q ss_pred HHHHHHHHHHHHH
Q 012910 417 MGSATLCGSLAAF 429 (453)
Q Consensus 417 ~~~~~~~~~i~~~ 429 (453)
.++..+++.+..+
T Consensus 350 ~~~~~~i~~~~~~ 362 (368)
T TIGR00903 350 LAILITIAFAIAL 362 (368)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877776543
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-30 Score=232.74 Aligned_cols=372 Identities=12% Similarity=0.042 Sum_probs=274.4
Q ss_pred ccccHHHHHHHHHHHHh-hcCcccccccchhHHhhcCCCccchhHHHHHH-HHhhhhcchhhhhhhccCCCCCCCCcchh
Q 012910 9 LNTRWVSTVASIWIQCT-SGSLYTFSIYSPALKTTQHYDQTTLDTVSVFK-DIGANTGTLSGVLYTYSTSDHSSHHPRQQ 86 (453)
Q Consensus 9 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~-~~~~~~~~~~g~l~dr~g~~~~~~~p~~g 86 (453)
++.++..+..+.+.... ....+.++++.+.+++|+|+|+.|.+++...- ..+.+.-++.|.+.||+|
T Consensus 9 k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfG----------- 77 (417)
T COG2223 9 KRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFG----------- 77 (417)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccC-----------
Confidence 44455555555554433 33467889999999999999999999655554 555556799999999999
Q ss_pred hhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhhee
Q 012910 87 RLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIM 165 (453)
Q Consensus 87 ~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~ 165 (453)
.|++..++.++..+-.+..+++ ... ++++++++.+++.|++.+ .+.++...+++||| +++|.++|+.
T Consensus 78 -------gR~~~~~s~~l~~IP~~~~~~a---~~~-~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~ 145 (417)
T COG2223 78 -------GRKWTILSMLLLLIPCLGLAFA---VTY-PSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIA 145 (417)
T ss_pred -------chHHHHHHHHHHHHHHHHHHHH---ccC-CchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHh
Confidence 9999999999999999887765 121 577899999999999987 67889999999998 7899999999
Q ss_pred cccCCCCc------ccc--cccc---cCcccchhhhhhhhhcccccCCCCcccCC-CCCCCCCCCCcCCcCCCCCCccHH
Q 012910 166 KGSDSDRT------SET--SFCE---EDELTDDPHEMHAEKMHVRQDPVGYHRLP-SEPDVGTDTNDATTSLWGGDLDLL 233 (453)
Q Consensus 166 ~~~~~~~~------~~~--~~~~---w~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 233 (453)
..+ +++. .|. ...+ |+..-.+......+..++.+.-.++.++. ...++ ..+.+++
T Consensus 146 g~G-N~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~------------~~~~~~~ 212 (417)
T COG2223 146 GAG-NLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKP------------QLPAQLK 212 (417)
T ss_pred ccc-cccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccc------------cchhHHH
Confidence 844 3321 111 1245 66655444333222222111111111110 00000 0113567
Q ss_pred HHhhhhHHHHHHHHHHhhhcchhhecccHHHhhh-hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhH
Q 012910 234 QAICTLEFWILSFAMACGMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLF 312 (453)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~ 312 (453)
.++++++.|.+.+.++...+.+.++..++|.|++ ++|.++.+++.........+.+.|+++|+++||++ .+++
T Consensus 213 ~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~G------g~rv 286 (417)
T COG2223 213 AVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIG------GRRV 286 (417)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhcc------chhH
Confidence 7889999999999999999999999999999997 56999999999999999999999999999999995 4445
Q ss_pred HHHHHHHHHHHHHHHHhc--------chhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhh
Q 012910 313 MVITLAAMSIGHLIIASG--------LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIF 384 (453)
Q Consensus 313 ~~~~~~~~~i~~~~~~~~--------~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~ 384 (453)
+......++++..+.... +...........+++.|........+++.+++ ++.|.+.|+....+++|++ +
T Consensus 287 ~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf-~ 364 (417)
T COG2223 287 TLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGF-F 364 (417)
T ss_pred HHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhcccccc-c
Confidence 555555655555554421 22233344455666777777777888888888 6889999999999999996 6
Q ss_pred hhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012910 385 SVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRT 435 (453)
Q Consensus 385 g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~ 435 (453)
-|...|...|.+|+ +...|++...+.+++.++.+..+.++
T Consensus 365 lp~~~g~~~~~tg~-----------~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 365 LPLAFGVSLDLTGS-----------YTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred hhHHHHHHHHhccc-----------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78899999999997 89999999999999888777766554
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=253.22 Aligned_cols=391 Identities=10% Similarity=-0.014 Sum_probs=262.0
Q ss_pred hccccHHHHHHHHHHHHh-hcCcccccccchhHHh----------------------hcCCCccchhHHHHHHHHhhhh-
Q 012910 8 RLNTRWVSTVASIWIQCT-SGSLYTFSIYSPALKT----------------------TQHYDQTTLDTVSVFKDIGANT- 63 (453)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~----------------------~~~~s~~~~~~i~~~~~~~~~~- 63 (453)
..+.||.+..+.++.... ......++...+.+++ |+++|..+.|++.+.+.+++..
T Consensus 13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~ 92 (465)
T TIGR00894 13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII 92 (465)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence 356677766666555444 3334555555556655 7899999999888888888875
Q ss_pred cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHh
Q 012910 64 GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFN 143 (453)
Q Consensus 64 ~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~ 143 (453)
++++|++.||+| +|+++.++.++++++.+++.++ .. .+++.+++.|+++|++.+..+
T Consensus 93 ~~~~g~l~dr~g------------------~r~~l~~~~~~~~~~~~~~~~~---~~--~~~~~l~~~r~~~G~~~~~~~ 149 (465)
T TIGR00894 93 QIPVGYLAGKYV------------------FKWSIGIGMFLSSVISIVIPWA---AG--GGIALVVFCRVIQGLAQGSVS 149 (465)
T ss_pred HcchHHHHHHhC------------------cchhhHHHHHHHHHHHHHHHHH---HH--cCchHHHHHHHHHHHhcccch
Confidence 599999999999 9999999999999888875433 11 367788899999999999999
Q ss_pred hhhhHhHhhhcC-CCccchhheecccCCCCcc--------cccc-cccCcccchhhhhhhhhccc-----ccCCCCcccC
Q 012910 144 TADVVTSVRNFP-TYSGTAVGIMKGSDSDRTS--------ETSF-CEEDELTDDPHEMHAEKMHV-----RQDPVGYHRL 208 (453)
Q Consensus 144 ~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~~--------~~~~-~~w~~~~~~~~~~~~~~~~l-----~~~~~~~~~~ 208 (453)
+....++.+|+| ++|++++|+...+..++.. .... .+||+.|.+......+...+ ++.|++++..
T Consensus 150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~ 229 (465)
T TIGR00894 150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCI 229 (465)
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCC
Confidence 999999999998 8999999998776655221 1122 38999998775544332221 1222111110
Q ss_pred CCCCCCC-CCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhh-cCCChhhhhHHHHHHHHH
Q 012910 209 PSEPDVG-TDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIW 286 (453)
Q Consensus 209 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~i~ 286 (453)
++++++. .+..++++++......+++.++++.+|...+..++.....+.+..++|.++++ +|++..++++..++..++
T Consensus 230 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~ 309 (465)
T TIGR00894 230 SKFEKKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLF 309 (465)
T ss_pred CHHHHHHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHH
Confidence 0000000 00000001111123457899999999999998888888888888899999865 699999999999999999
Q ss_pred HHHHhhhhhhhhhhhhhccccCchhH--HHHHH--HHHHHHHHHHHh--cchhHHHHHHHHHHHhhhhhhhhhHHHHhHh
Q 012910 287 NFLGRFGAGYVSDYFLHVKEWARPLF--MVITL--AAMSIGHLIIAS--GLPGALYAGSILVGVCYGSQWSLMPTIASEI 360 (453)
Q Consensus 287 ~~ig~~~~G~l~Dr~~~~~~~~r~~~--~~~~~--~~~~i~~~~~~~--~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~ 360 (453)
..++.++.|+++||+.+|+...++.. +.... .+..+..+.... .+.....+...+.+.+.+...+.......|.
T Consensus 310 ~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 389 (465)
T TIGR00894 310 AWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDL 389 (465)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhc
Confidence 99999999999999976643222211 11111 111111211221 2222233333444444444445444555666
Q ss_pred hccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHh
Q 012910 361 FGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLF 432 (453)
Q Consensus 361 ~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~ 432 (453)
.| +..|.+.|+.+....+++. ++|.+.|.+.|..+. +.|...|.+.++..+++.++.....
T Consensus 390 ~~-~~~g~~~g~~~~~~~l~~~-i~p~l~g~~~~~~~~---------~~~~~~f~~~~~~~~i~~i~~~~~~ 450 (465)
T TIGR00894 390 AP-RFLGFIKGITGLPGFIGGL-IASTLAGNILSQDSK---------NVWLIVFLIMAFVNILCVIFYLIFG 450 (465)
T ss_pred Ch-hHHHHHHHHHHHHHHHHHH-HHHHhhheeeCCCCc---------hHHHHHHHHHHHHHHHHHHHeeeee
Confidence 66 5899999999999999996 688899988876421 1288899999888888876655443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-29 Score=241.90 Aligned_cols=388 Identities=15% Similarity=0.091 Sum_probs=250.8
Q ss_pred cHHHHHHHHHHHHhhc-CcccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhh
Q 012910 12 RWVSTVASIWIQCTSG-SLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLT 89 (453)
Q Consensus 12 ~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~ 89 (453)
+|..+...++...... ....+....|.+++ +|+|.++.+++.+.+.++... .++.|++.||+|
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g-------------- 89 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSN-------------- 89 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccC--------------
Confidence 4555544444444332 24555666787776 599999999887777777765 599999999999
Q ss_pred hccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheeccc
Q 012910 90 RLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGS 168 (453)
Q Consensus 90 ~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~ 168 (453)
||+++.++.++.+++.+++++. .... ++++.+.+.|++.|++.+..++.....+.|++| ++||+++|+...+
T Consensus 90 ----~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~ 162 (438)
T TIGR00712 90 ----PRVFLPAGLILSAAVMLLMGFV-PWAT--SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCA 162 (438)
T ss_pred ----CceehHHHHHHHHHHHHHHhcc-cccc--chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHH
Confidence 9999999999998888875432 1111 367788899999999999988888889999996 7899999998765
Q ss_pred CCCCc--cc------c-cccccCcccchhhhhhhhhc-----ccccCCCCcccCCCCC-CCCCCCCcCCcCCCCC-Ccc-
Q 012910 169 DSDRT--SE------T-SFCEEDELTDDPHEMHAEKM-----HVRQDPVGYHRLPSEP-DVGTDTNDATTSLWGG-DLD- 231 (453)
Q Consensus 169 ~~~~~--~~------~-~~~~w~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~- 231 (453)
.+++. .+ . ...+||+.|........+.. .+++.+++...++.++ +++.+....++++.+. ..+
T Consensus 163 ~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (438)
T TIGR00712 163 HNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEI 242 (438)
T ss_pred HHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHH
Confidence 54321 11 1 12589998877644332211 1222222111000000 0000000000000000 011
Q ss_pred -HHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCc
Q 012910 232 -LLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWAR 309 (453)
Q Consensus 232 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r 309 (453)
.+..+|++.+|...+..++.....+.+..++|.++++ .|+++.++++...+..+.+++++++.|+++||+++++ |
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~---~ 319 (438)
T TIGR00712 243 FMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGN---R 319 (438)
T ss_pred HHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc---c
Confidence 1246788999988877777666666777889999986 5999999999999999999999999999999996431 1
Q ss_pred hhHHHHHHHHHHHHHHHHHh---cchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhh
Q 012910 310 PLFMVITLAAMSIGHLIIAS---GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSV 386 (453)
Q Consensus 310 ~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~ 386 (453)
............++...+.. .+.+......++.|++...........+.|.+|+++++++.|+.+....+++.+++|
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp 399 (438)
T TIGR00712 320 GATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAAS 399 (438)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcc
Confidence 21111111111222222221 122222333344444332222222345779999999999999999888877645689
Q ss_pred hhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012910 387 RVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTK 436 (453)
Q Consensus 387 ~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~ 436 (453)
.+.|.+.|+.| |+..+++..++.+++.+..+++.+++|
T Consensus 400 ~l~G~l~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 400 AIVGYTVDFFG------------WDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred hhHHHHHHhcc------------chHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999877 789999888888888777666655544
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=241.00 Aligned_cols=361 Identities=14% Similarity=0.016 Sum_probs=254.6
Q ss_pred cccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHH
Q 012910 29 LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFA 107 (453)
Q Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~ 107 (453)
.+.++...|.+++++|.|..+.+++.+...++... .++.|++.||+| ||+++.++.++.++
T Consensus 10 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g------------------~r~~~~~~~~~~~~ 71 (399)
T TIGR00893 10 RANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFG------------------ARKTLAVFIVIWGV 71 (399)
T ss_pred HHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcC------------------cceeeHHHHHHHHH
Confidence 45667778999999999999999888888777775 599999999999 99999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCcc--------cccc
Q 012910 108 GYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRTS--------ETSF 178 (453)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~~--------~~~~ 178 (453)
+..+++++ ++++.+++.|+++|++.+...+....++.|++| ++|++++++.....+++.. ....
T Consensus 72 ~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 144 (399)
T TIGR00893 72 FTGLQAFA-------GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH 144 (399)
T ss_pred HHHHHHHH-------cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh
Confidence 98886655 589999999999999999999999999999997 7899999998776655321 1123
Q ss_pred cccCcccchhhhhhhhhcc-----cccCCCCcccCCCCCCCC-CC----CCcCCcCCCCCCccHHHHhhhhHHHHHHHHH
Q 012910 179 CEEDELTDDPHEMHAEKMH-----VRQDPVGYHRLPSEPDVG-TD----TNDATTSLWGGDLDLLQAICTLEFWILSFAM 248 (453)
Q Consensus 179 ~~w~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (453)
.+|++.|............ .++++++....+++++++ .+ +.++.++++....+.++.+++|+++...+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (399)
T TIGR00893 145 FSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQ 224 (399)
T ss_pred CCchHHHHHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHH
Confidence 6899888765433222111 122221111000000000 00 0001111122334567889999999998888
Q ss_pred HhhhcchhhecccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHH-HHHHH--HHHH
Q 012910 249 ACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVI-TLAAM--SIGH 324 (453)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~-~~~~~--~i~~ 324 (453)
++.......+..+.|.++++ .|.++.+.+...+...+++.+++++.|+++||+++|+ +...... ..... ....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 301 (399)
T TIGR00893 225 FLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG---KSLVFARKTAIIAGLVLSL 301 (399)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc---cchhHHHHHHHHHHHHHHH
Confidence 88888877788888988865 6999999999999999999999999999999997552 0111111 11111 1111
Q ss_pred HHHHh--cchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCC
Q 012910 325 LIIAS--GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGN 402 (453)
Q Consensus 325 ~~~~~--~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~ 402 (453)
..... .+.....+.....+.......+....++.|.+|+++++++.|+.+....+|.. ++|.+.|.+.|..++
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~-~~~~i~g~l~~~~g~---- 376 (399)
T TIGR00893 302 LMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGI-VGPIVIGAIAATTGS---- 376 (399)
T ss_pred HHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhh-hhhHHhhhhccCCCc----
Confidence 11111 11222223333333333336788889999999999999999999999999996 699999999998775
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHH
Q 012910 403 KCTGTHCFMLSFFIMGSATLCGSLAAF 429 (453)
Q Consensus 403 ~~~~~~~~~~~f~~~~~~~~~~~i~~~ 429 (453)
|+..|.+.+++.+++.+..+
T Consensus 377 -------~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 377 -------FAGALMVVAALALIGALSYL 396 (399)
T ss_pred -------hhHHHHHHHHHHHHHHHHHH
Confidence 78888888887777765543
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=234.87 Aligned_cols=354 Identities=8% Similarity=0.008 Sum_probs=248.7
Q ss_pred ccccHHHHHHHHHHHHhhc-CcccccccchhHHhhcCCCccchhHHHHHHHHhhh-hcchhhhhhhccCCCCCCCCcchh
Q 012910 9 LNTRWVSTVASIWIQCTSG-SLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGAN-TGTLSGVLYTYSTSDHSSHHPRQQ 86 (453)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~-~~~~~g~l~dr~g~~~~~~~p~~g 86 (453)
.++.|..+....+...... ..+......|++.+|+|+|.++.++..+...++.. .+++.|++.||+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g----------- 83 (394)
T PRK10213 15 TRPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATD----------- 83 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----------
Confidence 4556665555444443333 34454556789999999999999976666666665 5699999999999
Q ss_pred hhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhhee
Q 012910 87 RLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIM 165 (453)
Q Consensus 87 ~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~ 165 (453)
||+++..+.++.+++.+++.++ ++++.+++.|+++|++.+...+....++.|++| ++|++++++.
T Consensus 84 -------rr~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~ 149 (394)
T PRK10213 84 -------RRYVVILFAVLLTLSCLLVSFA-------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVI 149 (394)
T ss_pred -------cHHHHHHHHHHHHHHHHHHHHH-------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHH
Confidence 9999999999999998885544 689999999999999999999999999999997 8899999998
Q ss_pred cccCCCCcc--------cccccccCcccchhhhhhhhhcc--cccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHH
Q 012910 166 KGSDSDRTS--------ETSFCEEDELTDDPHEMHAEKMH--VRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQA 235 (453)
Q Consensus 166 ~~~~~~~~~--------~~~~~~w~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (453)
.++.+++.. .....+||+.|........+... ....|+.+ ++++ ....+.++.
T Consensus 150 ~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~-----~~~~------------~~~~~~~~~ 212 (394)
T PRK10213 150 FGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP-----GEPS------------HQKQNTFRL 212 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC-----cccc------------cchhHHHHH
Confidence 776554221 11236899988776433332211 12222210 0000 011234678
Q ss_pred hhhhHHHHHHHHHHhhhcchhhecccH-HHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHH
Q 012910 236 ICTLEFWILSFAMACGMGSGLATVNNI-SQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMV 314 (453)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~ 314 (453)
+++|.+|...+..++..........+. |.+.++.|+++.+.+......++++.+++++.+++.||. +++..+.
T Consensus 213 l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~------~~~~l~~ 286 (394)
T PRK10213 213 LQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS------VKLALAG 286 (394)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc------chhHHHH
Confidence 899999887666555555444445555 666677899999999999999999999999999999985 3443333
Q ss_pred HHHHHHHHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhhe
Q 012910 315 ITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIY 393 (453)
Q Consensus 315 ~~~~~~~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~ 393 (453)
.........+++.. .++.+.+....++.|++.+...+.....+.+..| ++.+...+.......+|.. +||.+.|.+.
T Consensus 287 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~-~G~~l~G~l~ 364 (394)
T PRK10213 287 APLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANT-CGAAIGGYAL 364 (394)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 33333333333322 3445556667788899998888888888888887 5666777777777778875 6999999999
Q ss_pred eccCCCCCCccccccchHHHHHHHHHHHHHH
Q 012910 394 DREASGEGNKCTGTHCFMLSFFIMGSATLCG 424 (453)
Q Consensus 394 ~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~ 424 (453)
|..| +...+...+.+.++.
T Consensus 365 ~~~g------------~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 365 DNIG------------LTSPLMLSGTLMLLT 383 (394)
T ss_pred hccC------------hhhHHHHHHHHHHHH
Confidence 9877 566666655444333
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-29 Score=242.06 Aligned_cols=359 Identities=11% Similarity=0.047 Sum_probs=240.9
Q ss_pred hccccHHHHHHHHHHHHhhcC-cccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcch
Q 012910 8 RLNTRWVSTVASIWIQCTSGS-LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQ 85 (453)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~ 85 (453)
.++++|..+..+.+..+..+. .+..+...|.+++++|+|..+.+++.+...++..+ +++.|.+.||+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g---------- 75 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYG---------- 75 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhc----------
Confidence 456788887777777777666 56678889999999999999999877777777765 599999999999
Q ss_pred hhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhhe
Q 012910 86 QRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGI 164 (453)
Q Consensus 86 g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~ 164 (453)
||+++.++.++.+++.+++.+. ++++.+++.|+++|++.+..++....++.|++| ++|++++++
T Consensus 76 --------~r~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 140 (405)
T TIGR00891 76 --------RRLPMVTSIVLFSAGTLACGFA-------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGL 140 (405)
T ss_pred --------cHHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHH
Confidence 9999999999999998885443 589999999999999999999999999999997 899999999
Q ss_pred ecccCCCCcc--c------ccc--cccCcccchhhhhhhhhcc-cccCCCCcccCC-CCCCCCC-CCCc---CCcCC-CC
Q 012910 165 MKGSDSDRTS--E------TSF--CEEDELTDDPHEMHAEKMH-VRQDPVGYHRLP-SEPDVGT-DTND---ATTSL-WG 227 (453)
Q Consensus 165 ~~~~~~~~~~--~------~~~--~~w~~~~~~~~~~~~~~~~-l~~~~~~~~~~~-~~~~~~~-~~~~---~~~~~-~~ 227 (453)
...+.+++.. + ... .+||+.|............ ....|+++..++ .+++++. +..+ ++++. +.
T Consensus 141 ~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (405)
T TIGR00891 141 LISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIAN 220 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhh
Confidence 8776655221 1 111 2488887654322221111 112222111000 0000000 0000 00000 00
Q ss_pred CCc----cHHHHhh-hh-HHHHHHHHHHhhhcchhhecccHHHhhh-hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhh
Q 012910 228 GDL----DLLQAIC-TL-EFWILSFAMACGMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDY 300 (453)
Q Consensus 228 ~~~----~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr 300 (453)
... ..++..+ ++ .+....+...+..........++|.+++ +.|++..+.+...+...++..+++++.|++.||
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr 300 (405)
T TIGR00891 221 IVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDW 300 (405)
T ss_pred hhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0011001 11 1222222222223333345566777775 579999999999999999999999999999999
Q ss_pred hhhccccCchhHHHHHHHHHHHHHH-HHHh-cchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhh
Q 012910 301 FLHVKEWARPLFMVITLAAMSIGHL-IIAS-GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANP 378 (453)
Q Consensus 301 ~~~~~~~~r~~~~~~~~~~~~i~~~-~~~~-~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 378 (453)
+ +|++.+..+..+..+... .+.. .+.+.+.+...+.+++.+...+..+..+.|.+|+++++++.|+.+....
T Consensus 301 ~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 374 (405)
T TIGR00891 301 L------GRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGN 374 (405)
T ss_pred h------CchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHH
Confidence 9 555555555544422222 2222 2333344444566666666777888899999999999999999999999
Q ss_pred hhhhhhhhhhhhhheeccCC
Q 012910 379 VGSYIFSVRVVGYIYDREAS 398 (453)
Q Consensus 379 ~g~~i~g~~~~g~l~~~~g~ 398 (453)
+|.. ++|++.|.+.|+.|+
T Consensus 375 ~g~~-~g~~~~g~l~~~~g~ 393 (405)
T TIGR00891 375 LGGA-LAPIIGALLAQRLDE 393 (405)
T ss_pred HHHH-HHHHHHHHHHHhccc
Confidence 9986 799999999999886
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-29 Score=235.53 Aligned_cols=367 Identities=13% Similarity=0.076 Sum_probs=249.1
Q ss_pred HHHHHHHHHHHh-hcCcccccccchhHHh-hcCCCccchhHHHHHHHHhhh-hcchhhhhhhccCCCCCCCCcchhhhhh
Q 012910 14 VSTVASIWIQCT-SGSLYTFSIYSPALKT-TQHYDQTTLDTVSVFKDIGAN-TGTLSGVLYTYSTSDHSSHHPRQQRLTR 90 (453)
Q Consensus 14 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~-~~~~s~~~~~~i~~~~~~~~~-~~~~~g~l~dr~g~~~~~~~p~~g~~~~ 90 (453)
..+..+.+.... +...+.++++.+.+.+ |+|+|.+|.+++.+...+.+. ..++.|++.||+|
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G--------------- 98 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFG--------------- 98 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------
Confidence 444444443332 3346788888888876 899999999976666655555 5588899999999
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccC
Q 012910 91 LLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSD 169 (453)
Q Consensus 91 ~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~ 169 (453)
+|+++.++.+++++.++++++++.... ++++.+++.|++.|++ +..+++....+++||| ++||+++|+.....
T Consensus 99 ---~R~v~~~~~ll~~i~~~~~~~a~~~~~--~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G 172 (462)
T PRK15034 99 ---GRRWTVFSTAILIIPCVWLGIAVQNPN--TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLG 172 (462)
T ss_pred ---ChHHHHHHHHHHHHHHHHHHHHHcccC--CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHH
Confidence 999999999999999988665422222 4899999999999998 6688999999999998 78999999995333
Q ss_pred CCCc------ccc-------ccccc-------------CcccchhhhhhhhhcccccCCCCcccCCCCCCCCCCCCcCCc
Q 012910 170 SDRT------SET-------SFCEE-------------DELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATT 223 (453)
Q Consensus 170 ~~~~------~~~-------~~~~w-------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (453)
.++. .|. ...+| +...........+..++.+...++.++ +
T Consensus 173 ~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~-----~--------- 238 (462)
T PRK15034 173 NLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS-----S--------- 238 (462)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-----c---------
Confidence 2211 011 11233 332222212111111111110111000 0
Q ss_pred CCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 012910 224 SLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLH 303 (453)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~ 303 (453)
+....+.++.+|+|+.|.+.+.+++.++.+.++..++|.+.++ .++.........+..+...+.++++|+++||+
T Consensus 239 --~~~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRi-- 313 (462)
T PRK15034 239 --RASIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKF-- 313 (462)
T ss_pred --ccCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhc--
Confidence 0112345789999999999999999999988888889999876 34433333344556788999999999999999
Q ss_pred ccccCchhHHHHHHHHHHHHHHHH--Hhc-----chhHHHHHHHHHHHhhhhhhhhhHHHHhHhhcc-------------
Q 012910 304 VKEWARPLFMVITLAAMSIGHLII--ASG-----LPGALYAGSILVGVCYGSQWSLMPTIASEIFGV------------- 363 (453)
Q Consensus 304 ~~~~~r~~~~~~~~~~~~i~~~~~--~~~-----~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~------------- 363 (453)
++++++..+.+...+..... ..+ +.+...+......++.|........++.+++|+
T Consensus 314 ----G~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~ 389 (462)
T PRK15034 314 ----GGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSD 389 (462)
T ss_pred ----CchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccch
Confidence 56666666665555444321 121 112222333333455555566666677777763
Q ss_pred --------ccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012910 364 --------LQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRT 435 (453)
Q Consensus 364 --------~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~ 435 (453)
++.|.+.|+....+.+|++ +-|.+.|...+.+|+ |...|+...+..++++++.++.+.|+
T Consensus 390 ~~~~~~~~~~~g~v~G~v~a~G~~Ggf-~~p~~~g~~~~~~g~-----------~~~~~~~~~~~~~~~~~~~w~~y~r~ 457 (462)
T PRK15034 390 EQAQREAVTETAAALGFISAIGAVGGF-FIPQAFGMSLNMTGS-----------PVGAMKVFLIFYIVCVLLTWLVYGRR 457 (462)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHcccc-hhhHHHHHHHHHcCC-----------cHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 1567889999999999997 577788999999887 89999999999999988887776544
Q ss_pred h
Q 012910 436 K 436 (453)
Q Consensus 436 ~ 436 (453)
.
T Consensus 458 ~ 458 (462)
T PRK15034 458 K 458 (462)
T ss_pred C
Confidence 3
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=238.07 Aligned_cols=355 Identities=12% Similarity=-0.007 Sum_probs=227.7
Q ss_pred Chhhhhhh-ccccHHHHHHHHHHHHhhcC-cccccccchhHHhhcCCCccchh-HHHHHHH--Hhh----hhcchhhhhh
Q 012910 1 MERLKQLR-LNTRWVSTVASIWIQCTSGS-LYTFSIYSPALKTTQHYDQTTLD-TVSVFKD--IGA----NTGTLSGVLY 71 (453)
Q Consensus 1 ~~~~~~~~-~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~s~~~~~-~i~~~~~--~~~----~~~~~~g~l~ 71 (453)
|++|.+.. +..||......++..+.... ...++.+.|.+++|++.++.+.+ +..+... .+. +.+++.|++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~ 80 (434)
T PRK15075 1 MSTMTPAASRESKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYI 80 (434)
T ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 55664332 33455555555566665554 67789999999999999888876 3332222 122 2347889999
Q ss_pred hccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHH--------HHHHHHHHHHhhhhhHh
Q 012910 72 TYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVP--------VMCLFMLFAAHGMTFFN 143 (453)
Q Consensus 72 dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~g~~~~~ 143 (453)
||+| ||++++.+.+++.++.+++++ + ++++ .+++.|+++|++.+...
T Consensus 81 Dr~G------------------rr~~l~~~~~~~~~~~~l~~~-----~--~~~~~~~~~~~~~l~~~R~l~G~~~g~~~ 135 (434)
T PRK15075 81 DRVG------------------RRKGLIVTLSIMASGTLLIAF-----V--PGYATIGLAAPLLVLLGRLLQGFSAGVEL 135 (434)
T ss_pred hhhc------------------hHHHHHHHHHHHHHHHHHHHh-----C--CcHHHHHHHHHHHHHHHHHHhhccccccH
Confidence 9999 999999999999999998544 3 4655 46789999999999999
Q ss_pred hhhhHhHhhhcC-CCccchhheecccCCCC--------c------c--cccccccCcccchhhhhhhhhcccccCCCCcc
Q 012910 144 TADVVTSVRNFP-TYSGTAVGIMKGSDSDR--------T------S--ETSFCEEDELTDDPHEMHAEKMHVRQDPVGYH 206 (453)
Q Consensus 144 ~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~--------~------~--~~~~~~w~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (453)
+....++.|++| ++|++++++...+..++ . . .....+||+.|............+...+++.+
T Consensus 136 ~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~ 215 (434)
T PRK15075 136 GGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETE 215 (434)
T ss_pred HHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 988899999997 89999999865443221 0 0 01247899988764322222211222111100
Q ss_pred cCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHH-HHHhhhcchhhecccHHHhhhh-cCCChhhhhHHHHHHH
Q 012910 207 RLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSF-AMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWS 284 (453)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~ 284 (453)
+..+ +++ ++ +.+..+++..++++.+...+ ..++..........+.|.++++ .|++..++++...+..
T Consensus 216 ----~~~~---~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~ 284 (434)
T PRK15075 216 ----EFLA---RKH--RP--SMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVG 284 (434)
T ss_pred ----HHHH---hhh--cc--ccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 0000 000 00 11112334455555554432 2333334455567788999876 6999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHH-HHHH--HH-h-cchhHHHHHHHHHHHhhhhhhhhhHHHHhH
Q 012910 285 IWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSI-GHLI--IA-S-GLPGALYAGSILVGVCYGSQWSLMPTIASE 359 (453)
Q Consensus 285 i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i-~~~~--~~-~-~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~ 359 (453)
+++.+++++.|+++||+ +||+.+..+..+..+ .... .. . ++.........+.+++.+...+....++.|
T Consensus 285 ~~~~~~~~~~g~l~Dr~------g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e 358 (434)
T PRK15075 285 VSNFIWLPIGGALSDRI------GRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTE 358 (434)
T ss_pred HHHHHHHHHHHHHHHHh------cchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999999 445554444333222 1111 11 1 122222233445566677666667788899
Q ss_pred hhccccccchhhhhhh-hhhhhhhhhhhhhhhhheeccCC
Q 012910 360 IFGVLQMGTIFNTITI-ANPVGSYIFSVRVVGYIYDREAS 398 (453)
Q Consensus 360 ~~~~~~~g~~~g~~~~-~~~~g~~i~g~~~~g~l~~~~g~ 398 (453)
.+|++.|+++.|+.+. +..+++. ++|.+.|.+.|..|.
T Consensus 359 ~~p~~~rg~~~g~~~~~~~~~~g~-~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 359 VMPAEVRTAGFSLAYSLATAIFGG-FTPAISTWLIHVTGD 397 (434)
T ss_pred HCCCCccchheeHHHHHHHHHHhh-hHHHHHHHHHHhcCC
Confidence 9999999999998654 4444454 588899999998773
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-28 Score=232.65 Aligned_cols=338 Identities=12% Similarity=0.100 Sum_probs=232.5
Q ss_pred ccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHHH
Q 012910 34 IYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLM 112 (453)
Q Consensus 34 ~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~ 112 (453)
.+...+++++|.|..+.+++.+.+.++... +++.|++.||+| ||+++..+.++++++.+.+
T Consensus 37 ~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g------------------~r~~l~~~~~~~~~~~~~~ 98 (399)
T PRK05122 37 VLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLG------------------PKKAVVFGLCGCALSGLLY 98 (399)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccC------------------CcchHHHHHHHHHHHHHHH
Confidence 333457899999999999887777777765 699999999999 9999999999888877765
Q ss_pred HHHHhcCCC---CCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCc--------ccccccc
Q 012910 113 WASVVGLIP---RPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRT--------SETSFCE 180 (453)
Q Consensus 113 ~~~~~~~~~---~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~--------~~~~~~~ 180 (453)
+++ .+.+ ..+++.+++.|+++|++.+...+....++.+++| ++|++++++...+...+. ......+
T Consensus 99 ~~~--~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g 176 (399)
T PRK05122 99 LLA--GLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGG 176 (399)
T ss_pred HHh--hhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHccc
Confidence 443 1211 0256678899999999999999988888899986 899999998765543321 1112367
Q ss_pred cCcccchhhhhhhhhccccc-CCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhec
Q 012910 181 EDELTDDPHEMHAEKMHVRQ-DPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATV 259 (453)
Q Consensus 181 w~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (453)
|+..+............... .++. + ++++ ++.+.++.+++ ++.......+.........
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~-------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 236 (399)
T PRK05122 177 LAGLGLLIMLLALLGLLLARPRPAV----P-PVKG-------------ERLPFRRVLGR--VWPYGMGLALASIGFGTIA 236 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCC----C-CCCc-------------cchhHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 87766544332222111111 1110 0 0000 01123333332 2222222222222333344
Q ss_pred ccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhHHHHH
Q 012910 260 NNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYAG 338 (453)
Q Consensus 260 ~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~ 338 (453)
.+++.++++.|.+ +.+...+...++..+++++.|++.||+ ++++.+..+..+..++..++. .++.+...+.
T Consensus 237 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (399)
T PRK05122 237 TFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRL------GGLRVAIVSLLVEILGLLLLWLAPSPWMALIG 308 (399)
T ss_pred HHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 5667777776663 556777888899999999999999999 556666666666666665554 3444455566
Q ss_pred HHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHH
Q 012910 339 SILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMG 418 (453)
Q Consensus 339 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~ 418 (453)
.++.|++.+..++.....+.|.+|+++++++.|+.+....+|.. ++|++.|.+.|+.| |+..+++.+
T Consensus 309 ~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~-~~~~~~g~l~~~~g------------~~~~~~~~~ 375 (399)
T PRK05122 309 AALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLG-ITGPLAGLVASWFG------------YPSIFLAAA 375 (399)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcC------------HHHHHHHHH
Confidence 77889988888887777888999999999999999999999885 57778999999876 899999988
Q ss_pred HHHHHHHHHHHHHh
Q 012910 419 SATLCGSLAAFGLF 432 (453)
Q Consensus 419 ~~~~~~~i~~~~~~ 432 (453)
++.+++.++...+.
T Consensus 376 ~~~~~~~~~~~~~~ 389 (399)
T PRK05122 376 LAALLGLALTWLLY 389 (399)
T ss_pred HHHHHHHHHHHHhc
Confidence 88887776555443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-28 Score=234.12 Aligned_cols=372 Identities=9% Similarity=-0.043 Sum_probs=236.3
Q ss_pred cccHHHHHHHHHHHHhhcC-cccccccchh-HHhhc--CCCccchhHHHH-----HHHHhhhh-cchhhhhhhccCCCCC
Q 012910 10 NTRWVSTVASIWIQCTSGS-LYTFSIYSPA-LKTTQ--HYDQTTLDTVSV-----FKDIGANT-GTLSGVLYTYSTSDHS 79 (453)
Q Consensus 10 ~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~-~~~~~--~~s~~~~~~i~~-----~~~~~~~~-~~~~g~l~dr~g~~~~ 79 (453)
.++|.++..+++..+..+. ...++...|. +.+++ +.++. .+++.+ ...++... +++.|++.||+|
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~G---- 92 (438)
T PRK09952 18 SRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLG---- 92 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhc----
Confidence 3455565566556555554 4556666654 55555 56665 454322 12233333 477889999998
Q ss_pred CCCcchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHH--------HHHHHHHHHHhhhhhHhhhhhHhHh
Q 012910 80 SHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVP--------VMCLFMLFAAHGMTFFNTADVVTSV 151 (453)
Q Consensus 80 ~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~g~~~~~~~~~~~~~ 151 (453)
||+++.++.+++++++++++ ++ +++. .+++.|+++|++.|..++....++.
T Consensus 93 --------------rr~~l~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~ 151 (438)
T PRK09952 93 --------------RKRMLMLTVWMMGIATALIG-----LL--PSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAV 151 (438)
T ss_pred --------------cHHHHHHHHHHHHHHHHHHh-----cC--CcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Confidence 99999999999999999944 44 4665 4778999999999999999999999
Q ss_pred hhcC-CCccchhheecccCCCCccc----------c------cccccCcccchhhhhhhhhcccccCCCCcccCCCCCCC
Q 012910 152 RNFP-TYSGTAVGIMKGSDSDRTSE----------T------SFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDV 214 (453)
Q Consensus 152 ~~~p-~~rg~~~g~~~~~~~~~~~~----------~------~~~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 214 (453)
|++| ++||+..+....+..++... . ...+||..|........+...+....++.++ ..+..+
T Consensus 152 e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~-~~~~~~ 230 (438)
T PRK09952 152 ESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAE-FEQQQH 230 (438)
T ss_pred HhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChh-HHHHHh
Confidence 9997 88999888877665442210 0 1368999887664433222222221111110 000000
Q ss_pred CCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHH-HHhhhcchhhecccHHHhhh-hcCCChhhhhHHHHHHHHHHHHHhh
Q 012910 215 GTDTNDATTSLWGGDLDLLQAICTLEFWILSFA-MACGMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRF 292 (453)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~i~~~ig~~ 292 (453)
+. ++.+++....+.++++++.|...+. .++.....+....+.|.+.+ +.|++...........++...++.+
T Consensus 231 ~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~ 304 (438)
T PRK09952 231 EQ------AAAKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIP 304 (438)
T ss_pred hc------ccccccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000011122346677777766543 33334444556677888875 5688887666666677888889999
Q ss_pred hhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH----hcchh-HHHHHHHHHHHhhhhhhhhhHHHHhHhhcccccc
Q 012910 293 GAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA----SGLPG-ALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMG 367 (453)
Q Consensus 293 ~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~----~~~~~-~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g 367 (453)
+.|+++||+ +|++.+..+.++..++...+. ..+.. .+....++.+++.+...+..++++.|.+|++.|+
T Consensus 305 ~~g~l~Dr~------grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~ 378 (438)
T PRK09952 305 CFAWLADRF------GRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRY 378 (438)
T ss_pred HHHHHHHHh------CchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhH
Confidence 999999999 555555555554444332221 12222 2233445557777777788889999999999999
Q ss_pred chhhhhhh-hhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 012910 368 TIFNTITI-ANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGL 431 (453)
Q Consensus 368 ~~~g~~~~-~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~ 431 (453)
++.|+.+. +..+++. ++|.+.+.+.|..++. |...+...+++.+++.+..+..
T Consensus 379 tg~g~~~~~~~~lgg~-~~p~i~g~l~~~~~~~----------~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 379 SGAGVGYQVASVVGGG-FTPFIAAALVTYFGGS----------WHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred HHHhHHHHHHHHHHHH-HHHHHHHHHHHhcCCC----------chHHHHHHHHHHHHHHHHHHHc
Confidence 99998764 4557774 6899999998865321 7778888877777777665544
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-28 Score=239.85 Aligned_cols=400 Identities=13% Similarity=0.019 Sum_probs=243.5
Q ss_pred cHHHHHHHHHHHHhhcC-cccccccchhHHhhc--------CCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCC
Q 012910 12 RWVSTVASIWIQCTSGS-LYTFSIYSPALKTTQ--------HYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSH 81 (453)
Q Consensus 12 ~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~--------~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~ 81 (453)
...+.+++.+..+..+. ....+...|.+++++ +++..+.+++.+.+.++..+ ++++|+++||+|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~G------ 83 (479)
T PRK10077 10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFG------ 83 (479)
T ss_pred HHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 34444555555555665 445666667788777 88889999888888888876 599999999999
Q ss_pred CcchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcC----CC-CCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-
Q 012910 82 HPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGL----IP-RPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP- 155 (453)
Q Consensus 82 ~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p- 155 (453)
||++++++.+++.++.+++++....+ .. .+.++.++++|+++|++.|..++....+++|++|
T Consensus 84 ------------rr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~ 151 (479)
T PRK10077 84 ------------RRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPA 151 (479)
T ss_pred ------------cHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCCh
Confidence 99999999999998888755420000 00 0235677899999999999999999999999997
Q ss_pred CCccchhheecccCCCCcc----------------cccccccCcccchhhhhhhhhcc-cccCCCCcccC-CCCCCCCCC
Q 012910 156 TYSGTAVGIMKGSDSDRTS----------------ETSFCEEDELTDDPHEMHAEKMH-VRQDPVGYHRL-PSEPDVGTD 217 (453)
Q Consensus 156 ~~rg~~~g~~~~~~~~~~~----------------~~~~~~w~~~~~~~~~~~~~~~~-l~~~~~~~~~~-~~~~~~~~~ 217 (453)
++||+++++...+..++.. .....+||+.|........+... ....|+..+.. ..+++++..
T Consensus 152 ~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~ 231 (479)
T PRK10077 152 HIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAE 231 (479)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHH
Confidence 8899999998655433110 11236899988765333222211 11122211100 000000000
Q ss_pred C----CcCCcCCCCCCccHHHHhhh-----hHHHH-----HHHH----HHhhhcchhhecccHHHhhhhcCCChhhhhHH
Q 012910 218 T----NDATTSLWGGDLDLLQAICT-----LEFWI-----LSFA----MACGMGSGLATVNNISQIGGSLGYSSFETSSL 279 (453)
Q Consensus 218 ~----~~~~~~~~~~~~~~~~~~~~-----~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~ 279 (453)
. ....++......+.++.+++ +..+. .... .+...........+.|.+.++.|.+.......
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~ 311 (479)
T PRK10077 232 GILRKIMGNTLATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQ 311 (479)
T ss_pred HHHHHHcCChhHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHH
Confidence 0 00000000000011111110 11100 0100 11111111223345677778889988778888
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH---hcch-h-HHHHHHHHHHHhhhhh-hhhh
Q 012910 280 ISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA---SGLP-G-ALYAGSILVGVCYGSQ-WSLM 353 (453)
Q Consensus 280 ~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~---~~~~-~-~~~~~~~l~g~~~g~~-~~~~ 353 (453)
....++.+.++.++.|+++||+ +||.++..+..+.+++.+++. ..+. . .......+++++.+.. .+..
T Consensus 312 ~~~~~~~~~i~~~~~g~l~dr~------g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (479)
T PRK10077 312 TIIVGVINLTFTVLAIMTVDKF------GRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVC 385 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh------cChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchh
Confidence 8888999999999999999999 677777877777777766653 1121 1 2223334444444432 3667
Q ss_pred HHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhh------heeccCCCCCCccccccchHHHHHHHHHHHHHHHHH
Q 012910 354 PTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGY------IYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLA 427 (453)
Q Consensus 354 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~------l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~ 427 (453)
+.++.|.+|+++|+++.|+.+....++.. +++.+.+. +.|..+ +...|++.+++.++++++
T Consensus 386 ~~~~~e~~p~~~r~~~~g~~~~~~~~g~~-~~~~~~p~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~ 452 (479)
T PRK10077 386 WVLLSEIFPNAIRGKALAIAVAAQWIANY-FVSWTFPMMDKNSWLVAHFH------------NGFSYWIYGCMGVLAALF 452 (479)
T ss_pred HHHhHhhCChhHHHHHHHHHHHHHHHHHH-HHHHHhHHHHhccchhhhcc------------CccHHHHHHHHHHHHHHH
Confidence 78999999999999999999988888875 45444443 334444 567788877777777766
Q ss_pred HHHHhhhhhhhhHHHHHHHhh
Q 012910 428 AFGLFLRTKRFYNEVILRRLL 448 (453)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~ 448 (453)
.+++.+++|++..++.++..+
T Consensus 453 ~~~~~~e~~~~~~~~~~~~~~ 473 (479)
T PRK10077 453 MWKFVPETKGKTLEEMEALWE 473 (479)
T ss_pred HHhccccCCCCCHHHHHHHHh
Confidence 665656655554444444433
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=227.66 Aligned_cols=335 Identities=11% Similarity=0.017 Sum_probs=235.9
Q ss_pred cccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHH
Q 012910 29 LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFA 107 (453)
Q Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~ 107 (453)
.....++.|.+.+|+|.|..++|++.+.+.++... +++.|++.||+| ||+++.++.++.++
T Consensus 22 ~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g------------------~k~~~~~~~~~~~~ 83 (381)
T PRK03633 22 IAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIG------------------FNRSYYLASLIFAA 83 (381)
T ss_pred hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH------------------HHHHHHHHHHHHHH
Confidence 44566778999999999999999888888888775 599999999999 99999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCcc--c-----cccc
Q 012910 108 GYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRTS--E-----TSFC 179 (453)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~~--~-----~~~~ 179 (453)
+..+++++ ++++.+++.|+++|++.+...+.....+.++.| ++|++++++...+..++.. + ....
T Consensus 84 ~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 156 (381)
T PRK03633 84 GCAGLGLM-------VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE 156 (381)
T ss_pred HHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 98885544 689999999999999999888887777777775 8999999987665444211 0 1111
Q ss_pred ccCcccchhhhhhhhhcccccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhec
Q 012910 180 EEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATV 259 (453)
Q Consensus 180 ~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (453)
.++...+...........+.....+ +++ +++ + +..+.++.+++|.++......+..........
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~--------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (381)
T PRK03633 157 LMSVLPWVTGLVLAAILPLLFTRIL--NQQ--AEN--------H----DSTSIWPMLKLRQARLGVNGCIISGIVLGSLY 220 (381)
T ss_pred ccchHHHHHHHHHHHHHHHHHhccc--CCC--CCC--------C----CCCCHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 1111111111111111111111100 000 000 0 11245677888888765544444333334455
Q ss_pred ccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 012910 260 NNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGS 339 (453)
Q Consensus 260 ~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 339 (453)
.++|.+.++.|.++.+.+...+...++..++++..|++.||+ ++++.+..+..+..++..... . ........
T Consensus 221 ~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~------~~~~~l~~~~~~~~~~~~~~~-~-~~~~~~~~ 292 (381)
T PRK03633 221 GLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRF------GRLLVLRVQVFVVILGSIAML-S-QAAMAPAL 292 (381)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc------CcHHHHHHHHHHHHHHHHHHh-h-hHHHHHHH
Confidence 668888888899999999999999999999999999999999 666666666666665554443 1 12233445
Q ss_pred HHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHH
Q 012910 340 ILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGS 419 (453)
Q Consensus 340 ~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~ 419 (453)
.+.|++.....|.....+.|..|+++++...+..+...++|.. ++|.+.|.+.|+.+ ++..|.+.+.
T Consensus 293 ~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~-igp~~~G~l~~~~g------------~~~~f~~~~~ 359 (381)
T PRK03633 293 FILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSL-LGPSFTAMLMQNYS------------DNLLFIMIAS 359 (381)
T ss_pred HHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhC------------ccHHHHHHHH
Confidence 5667666667788888888988888888888888888889985 79999999999877 6888888777
Q ss_pred HHHHHH
Q 012910 420 ATLCGS 425 (453)
Q Consensus 420 ~~~~~~ 425 (453)
+.++..
T Consensus 360 ~~l~~~ 365 (381)
T PRK03633 360 VSFIYL 365 (381)
T ss_pred HHHHHH
Confidence 766554
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-28 Score=237.91 Aligned_cols=337 Identities=11% Similarity=-0.027 Sum_probs=237.3
Q ss_pred cccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHH
Q 012910 29 LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFA 107 (453)
Q Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~ 107 (453)
.+.++...|.+.+|+|.|..+.+++.+.+.++..+ .+++|+++||+| ||+++..+.++.++
T Consensus 26 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g------------------~r~~~~~~~~~~~~ 87 (471)
T PRK10504 26 TTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVG------------------VRNIFFTAIVLFTL 87 (471)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------------hHHHHHHHHHHHHH
Confidence 45566778999999999999999877777777664 589999999999 99999999888888
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCc--c------cccc
Q 012910 108 GYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRT--S------ETSF 178 (453)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~--~------~~~~ 178 (453)
+.+++.+ . ++++.+++.|+++|++.+...+.....+.|++| ++|+++.|+......++. . ....
T Consensus 88 ~~~~~~~-----~--~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~ 160 (471)
T PRK10504 88 GSLFCAL-----S--GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY 160 (471)
T ss_pred HHHHHHH-----h--CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Confidence 8887443 3 588999999999999999999999999999998 788999888764433311 1 1123
Q ss_pred cccCcccchhhhhhhhhc--ccccCCCCcccCCC-CC-----------------CCCCCC-CcC----------------
Q 012910 179 CEEDELTDDPHEMHAEKM--HVRQDPVGYHRLPS-EP-----------------DVGTDT-NDA---------------- 221 (453)
Q Consensus 179 ~~w~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~-~~-----------------~~~~~~-~~~---------------- 221 (453)
.+||+.|........+.. .....++...++.. +. +++... ...
T Consensus 161 ~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (471)
T PRK10504 161 ASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLL 240 (471)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHH
Confidence 689988876533222111 11111111111100 00 000000 000
Q ss_pred ---CcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhh
Q 012910 222 ---TTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYV 297 (453)
Q Consensus 222 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l 297 (453)
++....++....+++|||+++......++............|.+++. .|.++.++++......++..++.++.|++
T Consensus 241 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l 320 (471)
T PRK10504 241 YLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQV 320 (471)
T ss_pred HHHHHhcCCCCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000111112358899999888877777766655555667888874 79999999999999999999999999999
Q ss_pred hhhhhhccccCchhHHHHHHHHHHHHHHHHHh---cc-hhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhh
Q 012910 298 SDYFLHVKEWARPLFMVITLAAMSIGHLIIAS---GL-PGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTI 373 (453)
Q Consensus 298 ~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~---~~-~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~ 373 (453)
+||+ +|++++..+..+..+...++.. .+ .....+..++.|++.+..++.....+.+.+|+++++.+.|+.
T Consensus 321 ~~r~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 394 (471)
T PRK10504 321 VNRF------GYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLL 394 (471)
T ss_pred HHHc------CchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHH
Confidence 9999 6666777666666655544432 12 222334456677888888888888899999999999999999
Q ss_pred hhhhhhhhhhhhhhhhhhheeccC
Q 012910 374 TIANPVGSYIFSVRVVGYIYDREA 397 (453)
Q Consensus 374 ~~~~~~g~~i~g~~~~g~l~~~~g 397 (453)
++...+|.. +|+.+.|.+.+..+
T Consensus 395 ~~~~~~g~~-ig~~i~g~ll~~~g 417 (471)
T PRK10504 395 SMIMQLSMS-IGVTIAGLLLGLFG 417 (471)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhh
Confidence 999999985 68889998888765
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=240.55 Aligned_cols=366 Identities=12% Similarity=0.044 Sum_probs=265.6
Q ss_pred HhhcCCCccchhHHHHHHHHhhhhc-chhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhc
Q 012910 40 KTTQHYDQTTLDTVSVFKDIGANTG-TLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVG 118 (453)
Q Consensus 40 ~~~~~~s~~~~~~i~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~ 118 (453)
+.++++|..|-+++.+.+..|++.+ +++|++.||+| .|+++..+.++.++++++..++ ..
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G------------------~r~v~~~~~~~sa~~t~l~P~a-a~ 125 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFG------------------ARRVFFISGLISALLTLLTPLA-AS 125 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcC------------------chHHHHHHHHHHHHHHHHHHHH-HH
Confidence 5679999999999889999999875 89999999999 9999999999999999998876 22
Q ss_pred CCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCc---ccc-----c-ccccCcccchh
Q 012910 119 LIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRT---SET-----S-FCEEDELTDDP 188 (453)
Q Consensus 119 ~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~---~~~-----~-~~~w~~~~~~~ 188 (453)
.+++.+++.|++||+++|..+|+...+.++|.| +||++..++..++..++. .|. . ..||++.|++.
T Consensus 126 ----~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~ 201 (466)
T KOG2532|consen 126 ----IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVF 201 (466)
T ss_pred ----hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHH
Confidence 255677899999999999999999999999997 999999999988775432 121 1 27999999998
Q ss_pred hhhhhhhccc-----ccCCCCcccCCCCCCCCCCCCcC-CcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhecccH
Q 012910 189 HEMHAEKMHV-----RQDPVGYHRLPSEPDVGTDTNDA-TTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNI 262 (453)
Q Consensus 189 ~~~~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (453)
+....++..+ .+.|.+++.-..++.+..+..+. ...++..+.+++++++++.+|.+++..++.....+.+..++
T Consensus 202 g~~g~i~~~~w~~~~~d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~ 281 (466)
T KOG2532|consen 202 GIVGLIWFILWFLFYSDSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYL 281 (466)
T ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7776654432 33333322211111110011110 01111146789999999999999999999999999999999
Q ss_pred HHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhcc---ccCchhHHHHHHHHHHHHHHHHHh-cc-hhHHH
Q 012910 263 SQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVK---EWARPLFMVITLAAMSIGHLIIAS-GL-PGALY 336 (453)
Q Consensus 263 ~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~---~~~r~~~~~~~~~~~~i~~~~~~~-~~-~~~~~ 336 (453)
|.|+++ +|++..+.|++.++..+...+..+++|.++||+.+|. +..||..-.++....++.++.+.. +. .....
T Consensus 282 PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a 361 (466)
T KOG2532|consen 282 PTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLA 361 (466)
T ss_pred hHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHH
Confidence 999986 6999999999999999999999999999999997751 113555555666666666666552 21 22222
Q ss_pred HHHHHHHHhhhhh-hhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHH
Q 012910 337 AGSILVGVCYGSQ-WSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFF 415 (453)
Q Consensus 337 ~~~~l~g~~~g~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~ 415 (453)
+.......+..+. .+-...-..+. .+++.+..+|+.+....+.++ ++|.+.|.+... ++ .+.|+..|+
T Consensus 362 ~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~-~~P~~vg~~~~~-~t--------~~eW~~VF~ 430 (466)
T KOG2532|consen 362 VILLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGF-IAPLLVGIIVTD-NT--------REEWRIVFL 430 (466)
T ss_pred HHHHHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHH-HHHHheeeEeCC-CC--------HHHHHHHHH
Confidence 2222222222222 22222223333 448999999999999999996 799999999852 22 234999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhh
Q 012910 416 IMGSATLCGSLAAFGLFLRTKRFY 439 (453)
Q Consensus 416 ~~~~~~~~~~i~~~~~~~~~~~~~ 439 (453)
+.+++.+++.++..++...++..+
T Consensus 431 i~a~i~~~~~i~f~~f~s~e~~~w 454 (466)
T KOG2532|consen 431 IAAGILIVGNIIFLFFGSGEPAPW 454 (466)
T ss_pred HHHHHHHHhchheeEeecCcccCc
Confidence 999999999866555543333333
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=226.92 Aligned_cols=342 Identities=11% Similarity=0.011 Sum_probs=234.1
Q ss_pred cccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHH
Q 012910 29 LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFA 107 (453)
Q Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~ 107 (453)
........|.+++|+|+|.++.+++.+...++... +++.|++.||+| ||+++.++.++.++
T Consensus 19 ~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g------------------~r~~~~~~~~~~~~ 80 (382)
T PRK10091 19 EFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYS------------------LKHILLFLVALCVI 80 (382)
T ss_pred HHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCc------------------cHHHHHHHHHHHHH
Confidence 45566688999999999999999887788777775 599999999999 99999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCc--------ccccc
Q 012910 108 GYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRT--------SETSF 178 (453)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~--------~~~~~ 178 (453)
+.++++++ ++++.+++.|+++|++.+...+.....+.+++| ++|++++++...+..++. .....
T Consensus 81 ~~~l~~~~-------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~ 153 (382)
T PRK10091 81 GNAMFTLS-------SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQE 153 (382)
T ss_pred HHHHHHHh-------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhh
Confidence 99985554 699999999999999999888888888889997 688999998765543321 11123
Q ss_pred cccCcccchhhhhhhhhcc--cccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchh
Q 012910 179 CEEDELTDDPHEMHAEKMH--VRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGL 256 (453)
Q Consensus 179 ~~w~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (453)
.+||+.|............ ....|+.. + +++ . +..+..+.+|++.+|...+..++......
T Consensus 154 ~gwr~~f~~~~~~~~~~~~~~~~~lp~~~--~---~~~--------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (382)
T PRK10091 154 FSWRYTFLLIAVFNIAVLASIYFWVPDIR--D---EAK--------G----GLREQFHFLRSPAPWLIFAATMFGNAGVF 216 (382)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCCCCC--c---ccc--------c----CHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 6899988776443322211 12222211 0 000 0 00112356778888776665555443333
Q ss_pred hecccHHHhhh-hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH--hcchh
Q 012910 257 ATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA--SGLPG 333 (453)
Q Consensus 257 ~~~~~~~~~~~-~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~--~~~~~ 333 (453)
....+++++++ ..|+++.+.+...+..+++..+++++.|++.||+ ++++.+..+..+..++.+++. .++.+
T Consensus 217 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 290 (382)
T PRK10091 217 AWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY------SPLRIAAVTDFIIVLALLMLFFFGGMKT 290 (382)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc------CchhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34445566665 4799999999999999999999999999999999 556666666666666654443 23333
Q ss_pred HHHHHHHHHHHhhhhhhhhhHH-HHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHH
Q 012910 334 ALYAGSILVGVCYGSQWSLMPT-IASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFML 412 (453)
Q Consensus 334 ~~~~~~~l~g~~~g~~~~~~~~-~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~ 412 (453)
...+..++.+.+.+...+.... ...+..+++..+.+ ..+....+|.. +||.+.|.+.|..++ |+.
T Consensus 291 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~-~Gp~~~G~l~~~~~~-----------~~~ 356 (382)
T PRK10091 291 ASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSA-IGAYCGGMMLTLGLA-----------YNY 356 (382)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHH-HHHHHhHHHHHcccC-----------cch
Confidence 3334444455554444433333 33343444444433 34566778885 799999999997655 889
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 012910 413 SFFIMGSATLCGSLAAFGLF 432 (453)
Q Consensus 413 ~f~~~~~~~~~~~i~~~~~~ 432 (453)
.+.+.+++.++.........
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~ 376 (382)
T PRK10091 357 VALPAALLSFAAMSSLLLYG 376 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99888777766665544443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-28 Score=230.97 Aligned_cols=341 Identities=17% Similarity=0.116 Sum_probs=239.6
Q ss_pred CcccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHH
Q 012910 28 SLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCF 106 (453)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~ 106 (453)
....++...|.+++++|+|..+.+++.+...++... .++.|+++||+| ||+++.++.++.+
T Consensus 10 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g------------------~r~~~~~~~~~~~ 71 (379)
T TIGR00881 10 VRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSN------------------PRVFLPIGLILCA 71 (379)
T ss_pred hHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhC------------------CeehhHHHHHHHH
Confidence 356677888999999999999999888888777775 599999999999 9999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCc--cc-------c
Q 012910 107 AGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRT--SE-------T 176 (453)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~--~~-------~ 176 (453)
++.++++++ ++++.+++.|++.|++.+...+...+++.|++| ++|++++++...+..++. .+ .
T Consensus 72 ~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 144 (379)
T TIGR00881 72 IVNLFFGFS-------TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIA 144 (379)
T ss_pred HHHHHHHHh-------hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHH
Confidence 999986654 589999999999999999999999999999997 789999999877665532 12 1
Q ss_pred cccccCcccchhhhhhhhhc---c--cccCCCCcccCCCCCC--CCCCCCc--CCcCCCCCCccHHHHhhhhHHHHHHHH
Q 012910 177 SFCEEDELTDDPHEMHAEKM---H--VRQDPVGYHRLPSEPD--VGTDTND--ATTSLWGGDLDLLQAICTLEFWILSFA 247 (453)
Q Consensus 177 ~~~~w~~~~~~~~~~~~~~~---~--l~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (453)
...+|++.|........+.. . .+..+++...++.+++ ++.+..+ ++++....+...++.+++|.+|.+.+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (379)
T TIGR00881 145 ELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLG 224 (379)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHH
Confidence 22688888766543322211 1 1222211111111110 0000000 000111112234667889999988888
Q ss_pred HHhhhcchhhecccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHH
Q 012910 248 MACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLI 326 (453)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~ 326 (453)
.++.......+..+.|.++++ .|+++.+++...+...+++.+++++.|++.||..++ ++.............+...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~---~~~~~~~~~~~~~~~~~~~ 301 (379)
T TIGR00881 225 YVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNG---RRGPLAVFFMALIIVSLLV 301 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCC---cchHHHHHHHHHHHHHHHH
Confidence 877777777777788888864 699999999999999999999999999999987433 1222222222222222222
Q ss_pred HHh---cchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccC
Q 012910 327 IAS---GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREA 397 (453)
Q Consensus 327 ~~~---~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g 397 (453)
... .+.....+..++.|+......+.......|.+|+++++++.|+.+....+|+. ++|.+.|.+.|+.|
T Consensus 302 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~-~~~~~~g~l~~~~g 374 (379)
T TIGR00881 302 YWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGI-LAGLPLGYLADGFG 374 (379)
T ss_pred HhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhh-hhhhhHHHHHHhhc
Confidence 221 22223334445566655555556667889999999999999999999999996 79999999999876
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-28 Score=237.34 Aligned_cols=352 Identities=11% Similarity=-0.011 Sum_probs=255.3
Q ss_pred ccHHHHHHHHHHHHhhcC-cccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhh
Q 012910 11 TRWVSTVASIWIQCTSGS-LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRL 88 (453)
Q Consensus 11 ~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~ 88 (453)
|+|.+++..++..+.... .+..++..|++.+|+|.+..+.+|+.+.+.++... .+++|+++||+|
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~G------------- 69 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIG------------- 69 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------
Confidence 456666666565555444 66788889999999999999999988888888764 599999999999
Q ss_pred hhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhc-C-CCccchhheec
Q 012910 89 TRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNF-P-TYSGTAVGIMK 166 (453)
Q Consensus 89 ~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~-p-~~rg~~~g~~~ 166 (453)
||+++.++.+++.++.++++++ ++++.++++|+++|+|.+...+.....+.+++ | ++|++++|+..
T Consensus 70 -----rk~~l~~~~~~~~~~~~~~~~a-------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~ 137 (495)
T PRK14995 70 -----FKRLLMLGGTLFGLASLAAAFS-------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWA 137 (495)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999995544 69999999999999999998888888888876 5 78999999987
Q ss_pred ccCCCCc--------ccccccccCcccchhhhhhhhh--cccccCCCCcccCCCCCCCCC------------------CC
Q 012910 167 GSDSDRT--------SETSFCEEDELTDDPHEMHAEK--MHVRQDPVGYHRLPSEPDVGT------------------DT 218 (453)
Q Consensus 167 ~~~~~~~--------~~~~~~~w~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~------------------~~ 218 (453)
...+++. ......+||+.|+....+..+. ......|++..+++++.+... ..
T Consensus 138 ~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~ 217 (495)
T PRK14995 138 AVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALK 217 (495)
T ss_pred HHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccc
Confidence 6554421 1123378999987653322221 111222221111110000000 00
Q ss_pred Cc-CC--------------------cCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhh-cCCChhhh
Q 012910 219 ND-AT--------------------TSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFET 276 (453)
Q Consensus 219 ~~-~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~ 276 (453)
.. .. +.+..++.-..+++|+|.++...+..++..........++|.++++ +|+|+.++
T Consensus 218 ~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~a 297 (495)
T PRK14995 218 GFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEA 297 (495)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 00 00 0000111122468889988887777777766666666778888875 69999999
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH---h-cchhHHHHHHHHHHHhhhhhhhh
Q 012910 277 SSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA---S-GLPGALYAGSILVGVCYGSQWSL 352 (453)
Q Consensus 277 ~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~---~-~~~~~~~~~~~l~g~~~g~~~~~ 352 (453)
+.......++..++.++.|++.||+ ++++.+..+.++..++..++. . .+.+......++.|++.+...+.
T Consensus 298 g~~~~~~~~~~~~~~~~~g~l~~r~------g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~ 371 (495)
T PRK14995 298 GMFMLPVMVASGFSGPIAGILVSRL------GLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLA 371 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc------CchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999999 556666777776666665443 1 23334455677889999988888
Q ss_pred hHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhhee
Q 012910 353 MPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYD 394 (453)
Q Consensus 353 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~ 394 (453)
....+.+..|+++++.+.++.++...+|+. +|+.+.|.+.+
T Consensus 372 ~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~-~G~ai~g~i~~ 412 (495)
T PRK14995 372 STSAIMAAAPPEKAAAAGAIETMAYELGAG-LGIAIFGLLLS 412 (495)
T ss_pred HHHHHHhcCCHHhcchHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 888888999999999999999999989985 68888888765
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-27 Score=225.96 Aligned_cols=346 Identities=11% Similarity=0.043 Sum_probs=234.4
Q ss_pred cchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHHHH
Q 012910 35 YSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMW 113 (453)
Q Consensus 35 ~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~ 113 (453)
+.+.+.+|+|+|..+.+++.+.+.++... +++.|++.||+| ||+++..+.++.+++.+++.
T Consensus 35 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g------------------~k~~l~~~~~~~~~~~~~~~ 96 (402)
T TIGR00897 35 WLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIG------------------PLKTMMIGLLLWCVGHAAFI 96 (402)
T ss_pred hHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcC------------------cHHHHHHHHHHHHHHHHHHH
Confidence 34566688999999999877777777665 699999999999 99999999999988876642
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCc---cc------ccccccCc
Q 012910 114 ASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRT---SE------TSFCEEDE 183 (453)
Q Consensus 114 ~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~---~~------~~~~~w~~ 183 (453)
+ .+... ++++.+++.|+++|+|.+...+.....+.+++| ++|++++|+..++.+++. .+ ....+|+.
T Consensus 97 ~--~~~~~-~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~ 173 (402)
T TIGR00897 97 V--FGLGH-ANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMN 173 (402)
T ss_pred H--HhccC-ccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHH
Confidence 2 12322 478888899999999998887777778888875 899999999876554431 11 11245433
Q ss_pred ccchhhhhhh--hhcccccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhheccc
Q 012910 184 LTDDPHEMHA--EKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNN 261 (453)
Q Consensus 184 ~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (453)
.++....... ........++..+++ ++++ + ++..+....+++++|+|++|...+..++.......+..+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (402)
T TIGR00897 174 TLWSALAFVLTGGVIALFSNKDIFTPQ--HMQT---R----EKFSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVF 244 (402)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCcc--cccC---C----cchhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHH
Confidence 2222111111 110111111111110 0000 0 000011223567889999998887777766666677788
Q ss_pred HHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHH-HHHHHHHHHHHHH---HH---hcchhH
Q 012910 262 ISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFM-VITLAAMSIGHLI---IA---SGLPGA 334 (453)
Q Consensus 262 ~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~-~~~~~~~~i~~~~---~~---~~~~~~ 334 (453)
.|.+.++.|++..+.+...+...+++.+++++.|+++||+++ ++.+ ..+.....+.... .. .++.+.
T Consensus 245 ~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~------~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~ 318 (402)
T TIGR00897 245 LPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGW------MNTVRWFGGVGCGIFTLALYYIPQHFGHSFAV 318 (402)
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------hhHHHHHHHHHHHHHHHHHHHHHHccCCcHHH
Confidence 999999999999999999999999999999999999999953 3332 2222222222111 11 123334
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHH
Q 012910 335 LYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSF 414 (453)
Q Consensus 335 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f 414 (453)
..+..++.|++.+...+ ......|.. +++++++.|+.+....+++. ++|++.|.+.|..| +...+
T Consensus 319 ~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~-~gp~i~g~l~~~~g------------~~~~~ 383 (402)
T TIGR00897 319 ALIIAIALGIFLAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAF-LAPAIAVLFIGFFG------------AIGVV 383 (402)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcc------------hHHHH
Confidence 45566777877776544 345556654 47899999999999999996 79999999999887 68888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012910 415 FIMGSATLCGSLAAFGL 431 (453)
Q Consensus 415 ~~~~~~~~~~~i~~~~~ 431 (453)
++.+++.+++.++..++
T Consensus 384 ~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 384 WIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88888888877666554
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=229.49 Aligned_cols=370 Identities=11% Similarity=0.064 Sum_probs=251.2
Q ss_pred ChhhhhhhccccHHHHHHHHHHHHhhcCcccccccchhHHhhcCCCccchhHHHHHHHHhhh-hcchhhhhhhccCCCCC
Q 012910 1 MERLKQLRLNTRWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGAN-TGTLSGVLYTYSTSDHS 79 (453)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~-~~~~~g~l~dr~g~~~~ 79 (453)
|++|+|..+-.+++.+...++..+.. ...++...+.+++++|+|..++|++.+...+... .++++|+++||+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g---- 74 (400)
T PRK11646 1 MSRVSQARNLGKYFLLIDNMLVVLGF--FVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFG---- 74 (400)
T ss_pred CCCCcccccccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhC----
Confidence 67888877777776665555555432 3345566667889999999999976666555554 5699999999999
Q ss_pred CCCcchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCc
Q 012910 80 SHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYS 158 (453)
Q Consensus 80 ~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~r 158 (453)
||+++..+.++..++.+++.+. ++++.+++.|+++|++.+...+...+.+.+++| ++|
T Consensus 75 --------------~k~~l~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 133 (400)
T PRK11646 75 --------------AKPMIVTGMLMRAAGFATMAIA-------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQR 133 (400)
T ss_pred --------------chHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999999999886544 588899999999999999888888999999996 899
Q ss_pred cchhheecccCCCCc--cc-----ccccccCcccchhhhhhhhhcc--cccCCCCcccCCCCCCCCCCCCcCCcCCCCCC
Q 012910 159 GTAVGIMKGSDSDRT--SE-----TSFCEEDELTDDPHEMHAEKMH--VRQDPVGYHRLPSEPDVGTDTNDATTSLWGGD 229 (453)
Q Consensus 159 g~~~g~~~~~~~~~~--~~-----~~~~~w~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (453)
++++|+......++. .| ....+|++.|........+... ....++.. + +++ +++..
T Consensus 134 ~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~--~---~~~----------~~~~~ 198 (400)
T PRK11646 134 GRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPAYK--L---STV----------RTPVR 198 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCccc--c---ccc----------chhhH
Confidence 999999865544421 11 1136888887765433222111 11111110 0 000 00112
Q ss_pred ccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCc
Q 012910 230 LDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWAR 309 (453)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r 309 (453)
.++++.+++|+++...+..+...........++|.+.++.+.++.+.+...+..++....+....+++.||.. +.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~-----~~ 273 (400)
T PRK11646 199 EGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRF-----RL 273 (400)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ch
Confidence 3567788899887665554443333333345678888887667788888888887777665555566655421 32
Q ss_pred hhHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhh
Q 012910 310 PLFMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRV 388 (453)
Q Consensus 310 ~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~ 388 (453)
+..+..+..+..++.+++. .++.+...+...+.+.+.+...+....++.+..|++++|+..|+.+....+|.. +||.+
T Consensus 274 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~-ig~~l 352 (400)
T PRK11646 274 EHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGA-IGYIG 352 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHH-hcccc
Confidence 3334555555666655554 334444445556677787877888889999999999999999999999999985 79999
Q ss_pred hhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHH
Q 012910 389 VGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSL 426 (453)
Q Consensus 389 ~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i 426 (453)
.|.+.|+.++. +.....++..+++.+++.+
T Consensus 353 ~G~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 382 (400)
T PRK11646 353 GGWLFDLGKAL--------NQPELPWMMLGIIGLITLL 382 (400)
T ss_pred hHHHHHHHhhc--------CCcchHHHHHHHHHHHHHH
Confidence 99999986421 0034556555555555543
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-27 Score=227.20 Aligned_cols=346 Identities=13% Similarity=-0.026 Sum_probs=239.6
Q ss_pred ccccHHHHHHHHHHHHhhc-CcccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchh
Q 012910 9 LNTRWVSTVASIWIQCTSG-SLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQ 86 (453)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g 86 (453)
+++.|...+...+..+... ....+.+..|.+.+|+|.|..+.++..+.+.++... +++.|.+.||+|
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g----------- 76 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIG----------- 76 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------
Confidence 3455555555555554433 345555667889999999999999777777777765 599999999999
Q ss_pred hhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhhee
Q 012910 87 RLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIM 165 (453)
Q Consensus 87 ~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~ 165 (453)
||+++.++..+..++.+++.+. ++++.+++.|+++|++.+...+.....+.|++| ++|+++.++.
T Consensus 77 -------~r~~l~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 142 (406)
T PRK15402 77 -------RRPVMLAGVAFFILTCLAILLA-------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALM 142 (406)
T ss_pred -------ChHHHHHHHHHHHHHHHHHHHH-------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 9999999999999988885554 588999999999999999888888888999997 6777877776
Q ss_pred cccCCCC--cc------cccccccCcccchhhhhhhhhcc--cccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHH
Q 012910 166 KGSDSDR--TS------ETSFCEEDELTDDPHEMHAEKMH--VRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQA 235 (453)
Q Consensus 166 ~~~~~~~--~~------~~~~~~w~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (453)
.....++ .. .....+|++.|............ ....|+++.++ ++ + .+..+...+.++.
T Consensus 143 ~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~-----~~~~~~~~~~~~~ 211 (406)
T PRK15402 143 ANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRV----GE--K-----LSLKELGRDYKLV 211 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccc----cc--c-----ccHHHHHHHHHHH
Confidence 5433221 11 11236899888765443332211 11122211100 00 0 0000112345678
Q ss_pred hhhhHHHHHHHHHHhhhcchhhecccHHHhhh-hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHH
Q 012910 236 ICTLEFWILSFAMACGMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMV 314 (453)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~ 314 (453)
+++|+++...+..++.......+..+.|.+++ +.|+++.+.+.......++..+++++.|+++||+ ++++.+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~------~~~~~~~ 285 (406)
T PRK15402 212 LKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR------PLRSLIR 285 (406)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CHHHHHH
Confidence 89999988777766655544445555677765 5799999999888888889999999999999999 5556666
Q ss_pred HHHHHHHHHHHHHHh------cchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhh
Q 012910 315 ITLAAMSIGHLIIAS------GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRV 388 (453)
Q Consensus 315 ~~~~~~~i~~~~~~~------~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~ 388 (453)
.+.++..++..++.. .+.....+..++.|++.+...+......... +++++|+..+..++...++.. +|+.+
T Consensus 286 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~-~g~~~ 363 (406)
T PRK15402 286 MGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFT-VGIEL 363 (406)
T ss_pred HHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHH-HHHHH
Confidence 666666555554431 1233445566778888887776665554433 448999999999999888885 68889
Q ss_pred hhhheeccCC
Q 012910 389 VGYIYDREAS 398 (453)
Q Consensus 389 ~g~l~~~~g~ 398 (453)
.+.+++..+.
T Consensus 364 ~~~l~~~~~~ 373 (406)
T PRK15402 364 SKHAYLGGGN 373 (406)
T ss_pred HHhcccCCch
Confidence 9999998764
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-28 Score=244.62 Aligned_cols=377 Identities=11% Similarity=0.021 Sum_probs=257.1
Q ss_pred cccHHHHHHHHHHHHhhcC-cccccccchhHHhhcCCCccchhHHHHHHHHhhhhc-chhhhhhhccCCCCCCCCcchhh
Q 012910 10 NTRWVSTVASIWIQCTSGS-LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANTG-TLSGVLYTYSTSDHSSHHPRQQR 87 (453)
Q Consensus 10 ~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~p~~g~ 87 (453)
+.+|.+++++.+..+..+. ....+...|.++++++++..+.+++.+...++.+++ +++|+++||+|
T Consensus 163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~G------------ 230 (742)
T TIGR01299 163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLG------------ 230 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------
Confidence 4567666666666666555 455778889999999999999998888888888765 99999999999
Q ss_pred hhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheec
Q 012910 88 LTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMK 166 (453)
Q Consensus 88 ~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~ 166 (453)
||++++++.++.+++.++++++ ++++.++++|+++|++.+...+....++.|++| ++||++++++.
T Consensus 231 ------RR~~lii~lil~~i~~ll~afa-------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~ 297 (742)
T TIGR01299 231 ------RKQCLLICLSVNGFFAFFSSFV-------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLC 297 (742)
T ss_pred ------cHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 9999999999999988886554 589999999999999999999999999999998 88999988876
Q ss_pred ccCCCCc----------ccc-----------cccccCcccchhhhhhhhhc----ccccCCCCcccCC------------
Q 012910 167 GSDSDRT----------SET-----------SFCEEDELTDDPHEMHAEKM----HVRQDPVGYHRLP------------ 209 (453)
Q Consensus 167 ~~~~~~~----------~~~-----------~~~~w~~~~~~~~~~~~~~~----~l~~~~~~~~~~~------------ 209 (453)
++..++. .+. ...+||+.+.+......+.. .++..|.....+.
T Consensus 298 ~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i 377 (742)
T TIGR01299 298 MFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLI 377 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHH
Confidence 5443311 000 11357776655432222111 1222221100000
Q ss_pred --CC-C----CCC--------C-CCCc---CCcCCCCC----------------CccHHHHhhh---hHHHHHHHHHHhh
Q 012910 210 --SE-P----DVG--------T-DTND---ATTSLWGG----------------DLDLLQAICT---LEFWILSFAMACG 251 (453)
Q Consensus 210 --~~-~----~~~--------~-~~~~---~~~~~~~~----------------~~~~~~~~~~---~~~~~~~~~~~~~ 251 (453)
.+ . +++ . ...+ +.++.... ..+++++++. ++.+.+++..++.
T Consensus 378 ~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~ 457 (742)
T TIGR01299 378 HDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTL 457 (742)
T ss_pred hcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 00 0 000 0 0000 00000000 0023333332 2345666667777
Q ss_pred hcchhhecccHHHhhhhc------------------------------------------CCC-----------------
Q 012910 252 MGSGLATVNNISQIGGSL------------------------------------------GYS----------------- 272 (453)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~------------------------------------------g~s----------------- 272 (453)
.+..+++..|+|.++++. |+.
T Consensus 458 ~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (742)
T TIGR01299 458 SFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFD 537 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhccccccccccccccccccee
Confidence 777888888888765321 000
Q ss_pred --------------------------------------------------------hhhhhHHHHHHHHHHHHHhhhhhh
Q 012910 273 --------------------------------------------------------SFETSSLISLWSIWNFLGRFGAGY 296 (453)
Q Consensus 273 --------------------------------------------------------~~~~~~~~~~~~i~~~ig~~~~G~ 296 (453)
.........+.+++.+++.++.|+
T Consensus 538 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~ 617 (742)
T TIGR01299 538 DVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSAL 617 (742)
T ss_pred eccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001133355677889999999999
Q ss_pred hhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhh
Q 012910 297 VSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITI 375 (453)
Q Consensus 297 l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 375 (453)
++||+ +|++++..+.++.+++.+++. ..+...+++..++.+++.++.++...++++|++|++.|++++|+.+.
T Consensus 618 L~Dr~------GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~ 691 (742)
T TIGR01299 618 LMDKI------GRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNA 691 (742)
T ss_pred HHHHh------CCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 99999 778888888888888777665 33344455555677887777888889999999999999999999999
Q ss_pred hhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 012910 376 ANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGL 431 (453)
Q Consensus 376 ~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~ 431 (453)
...+|++ ++|++.+.+.+.. ...+|++.+++.++++++.+++
T Consensus 692 ~~rlGai-igp~i~g~L~~~~-------------~~~pf~i~a~~lll~~ll~~~L 733 (742)
T TIGR01299 692 LCKAAAV-LGILIFGSFVGIT-------------KAAPILFASAALACGGLLALKL 733 (742)
T ss_pred HHHHHHH-HHHHHHHHHHHhh-------------hHHHHHHHHHHHHHHHHHHHhC
Confidence 9999995 7998888887653 3667777777777776655544
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-27 Score=228.79 Aligned_cols=358 Identities=12% Similarity=0.037 Sum_probs=243.3
Q ss_pred cHHHHHHHHHHHHhhcC-cccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhh
Q 012910 12 RWVSTVASIWIQCTSGS-LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLT 89 (453)
Q Consensus 12 ~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~ 89 (453)
.+..++...++.+..+. ....+.+.|++++++|+|..+.+++.+.+.++... +++.|++.||+|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G-------------- 89 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLS-------------- 89 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------
Confidence 34433444444444555 56677889999999999999999877778777775 599999999999
Q ss_pred hccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheeccc
Q 012910 90 RLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGS 168 (453)
Q Consensus 90 ~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~ 168 (453)
||+++.++.++++++.+++... ..+ ++++.+++.|+++|+|.+...+..+.++.++.| ++|...+++.+..
T Consensus 90 ----~r~~l~~g~~~~~~~~~l~~~~--~~a--~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~ 161 (438)
T PRK10133 90 ----YKAGIITGLFLYALGAALFWPA--AEI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTF 161 (438)
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHH--Hhc--CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHH
Confidence 9999999999999999875321 223 589999999999999999999999999998877 4454567776555
Q ss_pred CCCC----ccc-------c--------------cc-cccC--------cccchhhhhhh-hhcc--cccCCCCcccCCCC
Q 012910 169 DSDR----TSE-------T--------------SF-CEED--------ELTDDPHEMHA-EKMH--VRQDPVGYHRLPSE 211 (453)
Q Consensus 169 ~~~~----~~~-------~--------------~~-~~w~--------~~~~~~~~~~~-~~~~--l~~~~~~~~~~~~~ 211 (453)
.+++ ... . .. .+|| ..|.....+.. .... ....|+.+ + +
T Consensus 162 ~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~--~--~ 237 (438)
T PRK10133 162 NSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQ--S--D 237 (438)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--c--c
Confidence 4331 100 0 00 1343 34432222211 1111 11112110 0 0
Q ss_pred CCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhh-h-hcCCChhhhhHHHHHHHHHHHH
Q 012910 212 PDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIG-G-SLGYSSFETSSLISLWSIWNFL 289 (453)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~g~s~~~~~~~~~~~~i~~~i 289 (453)
+++ + ++......+.++++++|.++...+..++..........+.+.++ + ..|+++.+++.....+.++..+
T Consensus 238 ~~~--~-----~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~v 310 (438)
T PRK10133 238 NHS--D-----AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFI 310 (438)
T ss_pred ccc--c-----ccccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHH
Confidence 000 0 00001123456888999988877777776666666667777774 4 4699999999999999999999
Q ss_pred HhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccc
Q 012910 290 GRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGT 368 (453)
Q Consensus 290 g~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~ 368 (453)
|+++.|++.||+ ++++++..+..+..+.+++.. .++. .......+.|++.+..+|...+...+.+| ++.++
T Consensus 311 G~~~~g~l~~r~------g~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~-~~~~~ 382 (438)
T PRK10133 311 GRFTGTWLISRF------APHKVLAAYALIAMALCLISAFAGGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLG-QDTKY 382 (438)
T ss_pred HHHHHHHHHHHc------CHHHHHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccc-hhhcc
Confidence 999999999999 556666666655555544433 2222 33456678899999999999999999987 45778
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHH
Q 012910 369 IFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLC 423 (453)
Q Consensus 369 ~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~ 423 (453)
+.++... ..+|+. ++|++.|.+.|..|+ .+..|++..++.+.
T Consensus 383 as~l~~~-~~~g~~-~~~~i~G~l~~~~g~-----------~~~~~~v~~~~~~~ 424 (438)
T PRK10133 383 GSSFIVM-TIIGGG-IVTPVMGFVSDAAGN-----------IPTAELIPALCFAV 424 (438)
T ss_pred chhHHhH-Hhccch-HHHHHHHHHHHhccc-----------hHHHHHHHHHHHHH
Confidence 8888764 445664 577799999998652 36677655444433
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-27 Score=225.07 Aligned_cols=339 Identities=12% Similarity=0.035 Sum_probs=226.4
Q ss_pred ccch-hHHhhcCCCccchhHHHHHHHHhhh-hcchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHH
Q 012910 34 IYSP-ALKTTQHYDQTTLDTVSVFKDIGAN-TGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFL 111 (453)
Q Consensus 34 ~~~~-~~~~~~~~s~~~~~~i~~~~~~~~~-~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~ 111 (453)
+..| .+++|+|.|..+++++.+.+.++.. .+++.|+++||+| ||++++++.+.+.++.+.
T Consensus 36 p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g------------------~r~~l~~~~~~~~~~~~~ 97 (392)
T PRK12382 36 PVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYG------------------AKRSALQGMLACGLAGLA 97 (392)
T ss_pred hhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhc------------------chHHHHHHHHHHHHHHHH
Confidence 3444 5789999999999987777777766 5699999999999 999999988887766543
Q ss_pred HHHHH-hcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCc--------cccccccc
Q 012910 112 MWASV-VGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRT--------SETSFCEE 181 (453)
Q Consensus 112 ~~~~~-~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~--------~~~~~~~w 181 (453)
..... ......++++.+++.|+++|++.+...+...+++.+++| ++|++++++...+...+. ......+|
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~ 177 (392)
T PRK12382 98 YLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGF 177 (392)
T ss_pred HHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence 22210 011111478889999999999999988888888899996 899999999866543311 11122567
Q ss_pred Ccccchhhhhhhhhcc-cccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhecc
Q 012910 182 DELTDDPHEMHAEKMH-VRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVN 260 (453)
Q Consensus 182 ~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (453)
+..+............ ....++. + ++++ + +.+.++.++ .+|...+...+..........
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~--------~-----~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 237 (392)
T PRK12382 178 AALALTTMVLPLLAWAFNGTVRKV----P-AHAG--------E-----RPSLWSVVG--LIWKPGLGLALQGVGFAVIGT 237 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCC----C-CCcc--------c-----CchHHHHHH--HHHHhHHHHHHHHHHHhHHHH
Confidence 6654333222111111 1111110 0 0000 0 011222222 112111111222222223445
Q ss_pred cHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhHHHHHH
Q 012910 261 NISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYAGS 339 (453)
Q Consensus 261 ~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~ 339 (453)
+.+.++++.+++ +.+...+...++..+++++.|++.||+ ++++.+..+..+..++.+++. .++.....+..
T Consensus 238 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (392)
T PRK12382 238 FVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRF------GGVKVAIVSLLVETVGLLLLWLAPTAWVALAGA 309 (392)
T ss_pred HHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhc------CCCeehHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 667777777765 356667778888899999999999999 455555666666666665554 34444555666
Q ss_pred HHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHH
Q 012910 340 ILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGS 419 (453)
Q Consensus 340 ~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~ 419 (453)
++.|++.+...+.....+.|.+|++++|++.|+.+....+|.. ++|++.|.+.|+.| |+..|.+.++
T Consensus 310 ~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~-ig~~~~g~l~~~~g------------~~~~~~~~~~ 376 (392)
T PRK12382 310 ALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYG-VSGPLAGMLATSFG------------YPSVFLAGAI 376 (392)
T ss_pred HHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhC------------chHHHHHHHH
Confidence 7788888887888888888999999999999999999999985 69999999999877 8999999988
Q ss_pred HHHHHHHHHHHH
Q 012910 420 ATLCGSLAAFGL 431 (453)
Q Consensus 420 ~~~~~~i~~~~~ 431 (453)
+.+++.++.+..
T Consensus 377 ~~~~~~~~~~~~ 388 (392)
T PRK12382 377 SAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHhh
Confidence 888877655433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=237.08 Aligned_cols=369 Identities=10% Similarity=0.032 Sum_probs=234.7
Q ss_pred cccHHHHHHHHHHHHhhcC-cccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhh
Q 012910 10 NTRWVSTVASIWIQCTSGS-LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQR 87 (453)
Q Consensus 10 ~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~ 87 (453)
+++|..+....+..+..+. ....+...|.+.+++|+|..+.+++.+...++... +++.|++.||+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g------------ 83 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYG------------ 83 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------
Confidence 4556655555555555444 45567778999999999999999777777777765 599999999999
Q ss_pred hhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheec
Q 012910 88 LTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMK 166 (453)
Q Consensus 88 ~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~ 166 (453)
||+++.++.++.+++.+++.+. ++++.+++.|++.|++.+..++....++.|++| ++|++++++..
T Consensus 84 ------~r~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 150 (496)
T PRK03893 84 ------RRLAMVISIVLFSVGTLACGFA-------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLI 150 (496)
T ss_pred ------cHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 9999999999999998886554 589999999999999999999999999999997 78999999887
Q ss_pred ccCCCCc--------ccccccccCcccchhhhhhhhhccc-ccCCCCcccCCCCCCCCCCCCcCCcC-CCCCCccHHHH-
Q 012910 167 GSDSDRT--------SETSFCEEDELTDDPHEMHAEKMHV-RQDPVGYHRLPSEPDVGTDTNDATTS-LWGGDLDLLQA- 235 (453)
Q Consensus 167 ~~~~~~~--------~~~~~~~w~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~- 235 (453)
.+..++. ......+||+.|............. ...|+....+++++++ +..++..+ ....+......
T Consensus 151 ~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 228 (496)
T PRK03893 151 SGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGK--APVRTMVDILYRGEHRIINIL 228 (496)
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhcccc--ccchhHHHHHhcchhHHHHHH
Confidence 6554421 1122368888876532222211111 1222211100000000 00000000 00000000000
Q ss_pred ------------hh-------------------------------hhHHHHHHHHHHhhhcchhhecccHHHhhh-hcCC
Q 012910 236 ------------IC-------------------------------TLEFWILSFAMACGMGSGLATVNNISQIGG-SLGY 271 (453)
Q Consensus 236 ------------~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~ 271 (453)
+. .+......+..+...........++|.+++ +.|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~ 308 (496)
T PRK03893 229 LTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGY 308 (496)
T ss_pred HHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCC
Confidence 00 000000011111111111223456788885 7899
Q ss_pred ChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcch--hHHHHHHHHHHHhhhh
Q 012910 272 SSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLP--GALYAGSILVGVCYGS 348 (453)
Q Consensus 272 s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~--~~~~~~~~l~g~~~g~ 348 (453)
+..+++...+...++..+++++.|+++||+ +|++.+..+..+..+..+.+. ..+. +......++.+.....
T Consensus 309 ~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (496)
T PRK03893 309 DPHTVANVLFFSGFGAAVGCCVGGFLGDWL------GTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQG 382 (496)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999 555556655555444443332 2221 1222222333333333
Q ss_pred hhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHH
Q 012910 349 QWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCG 424 (453)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~ 424 (453)
..+..+.++.|.+|++++++++|+.+....+|+. ++|.+.|.+.|+.| |+..+...++...+.
T Consensus 383 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~-lgp~l~g~l~~~~g------------~~~~~~~~~~~~~~~ 445 (496)
T PRK03893 383 ISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGA-LAPILGALIAQRLD------------LGTALASLSFSLTFV 445 (496)
T ss_pred cchhhHHHHHhhCCHHHhhcccchhhhhhhHHHH-HHHHHHHHHhccCC------------hHHHHHHHHHHHHHH
Confidence 4566777889999999999999999988899985 69999999999877 677776555444333
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-27 Score=224.86 Aligned_cols=324 Identities=12% Similarity=0.053 Sum_probs=232.9
Q ss_pred cccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHH
Q 012910 29 LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFA 107 (453)
Q Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~ 107 (453)
...+++..|.+++|+|+|.++.+++.+.+.++..+ +++.|++.||+| +|+++.++.++..+
T Consensus 16 ~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g------------------~r~~~~~~~~~~~~ 77 (355)
T TIGR00896 16 LTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFG------------------EERSVAAGLLLIAA 77 (355)
T ss_pred cccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC------------------chHHHHHHHHHHHH
Confidence 45678899999999999999999888888887775 599999999999 99999999988887
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcCCCccchhheecccCCCCc-------cccc-c-
Q 012910 108 GYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKGSDSDRT-------SETS-F- 178 (453)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p~~rg~~~g~~~~~~~~~~-------~~~~-~- 178 (453)
+.+.+ .. ++++.+++.|++.|++.+...+.....+.|++|++|++++++...+.+++. .+.. .
T Consensus 78 ~~~~~------~~--~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~ 149 (355)
T TIGR00896 78 GILIR------SA--PGTALLFAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPLAQHS 149 (355)
T ss_pred HHHHH------Hh--ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77763 22 578888899999999999888888888889999999999999876544321 1111 1
Q ss_pred -cccCcccchhhhhhhhhcccccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhh
Q 012910 179 -CEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLA 257 (453)
Q Consensus 179 -~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (453)
.+||+.|........... +...++.+++++ +++ + ......++.+|+|.+|...+..++.......
T Consensus 150 ~~~w~~~f~~~~~~~~~~~-~~~~~~~~~~~~--~~~--------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (355)
T TIGR00896 150 GGHWQQALAWWALPALLAL-LAWIPQVRRRVA--ANQ--------T---TTRLTPVRIWRSPLAWQVTVFFGLQSGLYYS 215 (355)
T ss_pred hhhHHHHHHHHHHHHHHHH-HHHhhhhccccC--CCC--------C---CCCCCCchhhcCHhHHHHHHHHHHHHHHHHH
Confidence 237777755433222111 111121111100 000 0 0112345678889888877766666666666
Q ss_pred ecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHhcchhHHHH
Q 012910 258 TVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYA 337 (453)
Q Consensus 258 ~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 337 (453)
...++|.++++.|.+..+.+...+...++.++++++.|++.||++ +|+..+..+..+..++.+.+..........
T Consensus 216 ~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (355)
T TIGR00896 216 LIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVK-----DQRGIVAVLAVLQLVGLCGLLFAPMHGLWA 290 (355)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhc-----cchHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 777899999989999999999999999999999999999999995 334455555555555555444211112222
Q ss_pred HHHHHHHhhhhhhhhhHHHHhHhhc-cccccchhhhhhhhhhhhhhhhhhhhhhhheeccCC
Q 012910 338 GSILVGVCYGSQWSLMPTIASEIFG-VLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREAS 398 (453)
Q Consensus 338 ~~~l~g~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~ 398 (453)
...+.|++.+..++.....+.+..+ +++++...++.+....++.. ++|.+.|.+.|+.|+
T Consensus 291 ~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~gp~~~G~l~~~~g~ 351 (355)
T TIGR00896 291 WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAA-LGPLFVGVLHDISGN 351 (355)
T ss_pred HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcc
Confidence 4567899998888887776665554 45678888988888888875 699999999999875
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-27 Score=234.70 Aligned_cols=367 Identities=12% Similarity=0.003 Sum_probs=238.8
Q ss_pred cccccccchhHHhhcCCC--------ccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHH
Q 012910 29 LYTFSIYSPALKTTQHYD--------QTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLL 99 (453)
Q Consensus 29 ~~~~~~~~~~~~~~~~~s--------~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~ 99 (453)
....+...|.+..+++.+ ..+.+++.+.+.++..+ ++++|+++||+| ||++++
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g------------------rr~~~~ 105 (481)
T TIGR00879 44 TGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFG------------------RKKSLL 105 (481)
T ss_pred cchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhh------------------hHHHHH
Confidence 344566677788887776 78888877777777765 599999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCC------
Q 012910 100 VGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDR------ 172 (453)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~------ 172 (453)
++.++..++.+++.+. ... .+++.+++.|+++|+|.+..++....++.|++| ++|++++++...+..++
T Consensus 106 ~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 181 (481)
T TIGR00879 106 IIALLFVIGAILMGLA--AFA--LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYG 181 (481)
T ss_pred HHHHHHHHHHHHHHHh--ccc--cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999998885432 112 356788999999999999999999999999996 89999999986554331
Q ss_pred -----cccccccccCcccchhhhhhhhhcc----cccCCCCcccCCCCCCC---------CCCCCcCC-c----------
Q 012910 173 -----TSETSFCEEDELTDDPHEMHAEKMH----VRQDPVGYHRLPSEPDV---------GTDTNDAT-T---------- 223 (453)
Q Consensus 173 -----~~~~~~~~w~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~---------~~~~~~~~-~---------- 223 (453)
.......+||+.|............ +++.+.....+++.++. +.+.+.+. +
T Consensus 182 ~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (481)
T TIGR00879 182 FGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRS 261 (481)
T ss_pred HHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHH
Confidence 1111236889888764322221111 22221100000000000 00000000 0
Q ss_pred -CCCCCCccHHHHhh------hhHHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhh
Q 012910 224 -SLWGGDLDLLQAIC------TLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGY 296 (453)
Q Consensus 224 -~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~ 296 (453)
+.......+++.++ .+.++...+..+...........+.|.+.++.|++..+++.......++..+++++.|+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 341 (481)
T TIGR00879 262 IEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIF 341 (481)
T ss_pred HHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000011122222 22333333334333333444556677888888999988999999999999999999999
Q ss_pred hhhhhhhccccCchhHHHHHHHHHHHHHHHHH---h--cc------hhHHHHHHHHHHHhhhh-hhhhhHHHHhHhhccc
Q 012910 297 VSDYFLHVKEWARPLFMVITLAAMSIGHLIIA---S--GL------PGALYAGSILVGVCYGS-QWSLMPTIASEIFGVL 364 (453)
Q Consensus 297 l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~---~--~~------~~~~~~~~~l~g~~~g~-~~~~~~~~~~~~~~~~ 364 (453)
++||+ +|++.+..+.++..++.+++. . .. .........+.+.+.+. ..+....++.|.+|++
T Consensus 342 l~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 415 (481)
T TIGR00879 342 LVDRF------GRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLS 415 (481)
T ss_pred HHHHh------cchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChH
Confidence 99999 566666666666666655543 1 11 22222223333333333 3355567779999999
Q ss_pred cccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012910 365 QMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTK 436 (453)
Q Consensus 365 ~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~ 436 (453)
+++++.|+.+....+|+. ++|.+.+.+.++.+ |...|++.++++++++++..+..++.+
T Consensus 416 ~~~~~~~~~~~~~~lg~~-i~~~~~~~~~~~~~------------~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 416 LRPKGISIAVAANWLANF-IVGFLFPTMLESIG------------VGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcC------------ccceehhHHHHHHHHHHHHheecccCC
Confidence 999999999999999996 68889999988866 788888888888887766665554443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-27 Score=227.99 Aligned_cols=356 Identities=11% Similarity=-0.027 Sum_probs=243.2
Q ss_pred ccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHH
Q 012910 32 FSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYF 110 (453)
Q Consensus 32 ~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~ 110 (453)
..+..|.+.++++.+..+.+++.+...++... +++.|++.||+| ||+++.++.++.+++.+
T Consensus 36 ~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g------------------~~~~l~~~~~~~~~~~~ 97 (417)
T PRK10489 36 LGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYD------------------RKKLILLARGTCGLGFI 97 (417)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcC------------------CceEEEehHHHHHHHHH
Confidence 34556788888889999999888888777775 599999999999 99999988888887776
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCc--cc------cccccc
Q 012910 111 LMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRT--SE------TSFCEE 181 (453)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~--~~------~~~~~w 181 (453)
.++.. .+...++++.+++.|+++|++.+...+...+.+.+++| ++|+++.++.....+++. .+ ....+|
T Consensus 98 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~ 175 (417)
T PRK10489 98 GLALN--AFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGV 175 (417)
T ss_pred HHHHH--HHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhh
Confidence 64432 12122578888899999999999888888888999997 788999998765544421 11 112578
Q ss_pred Ccccchhhhhhhhhcc-cccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhecc
Q 012910 182 DELTDDPHEMHAEKMH-VRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVN 260 (453)
Q Consensus 182 ~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (453)
++.|............ +...++.. +++ +++ + ++.++....++..+++|.++...+..++... ......
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~--~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 244 (417)
T PRK10489 176 AWNYGLAAAGTFITLLPLLRLPALP-PPP--QPR--E-----HPLRSLLAGFRFLLASPVVGGIALLGGLLTM-ASAVRV 244 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCC-CCC--ccc--c-----cchHHHHHHHHHHHcChHHHHHHHHHHHHHH-HHhHHH
Confidence 8877654332222111 11112111 000 000 0 0000111234556778877665544443322 234556
Q ss_pred cHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhHHHHH
Q 012910 261 NISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYAG 338 (453)
Q Consensus 261 ~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~ 338 (453)
++|.+.++ .|.++.+.+...+...++..++.++.+++.||. ++++.+..+.++..++..++. .++.....+.
T Consensus 245 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (417)
T PRK10489 245 LYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA------RPGLLMLLSTLGSFLAVGLFGLMPMWILAVLC 318 (417)
T ss_pred hhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc------CcchHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 78888887 799999999999999999999999999999986 445555566666666665554 3333444556
Q ss_pred HHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHH
Q 012910 339 SILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMG 418 (453)
Q Consensus 339 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~ 418 (453)
.++.|++.+...+...+++.|..|++.||++.|+.+....+|.. +||.+.|.+.|..+ +...+...+
T Consensus 319 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~-~g~~l~G~l~~~~g------------~~~~~~~~~ 385 (417)
T PRK10489 319 LALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDA-IGAALLGGLGAMMT------------PVASASASG 385 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHh-HHHHHHHHHHHHhc------------hhhHHHHHH
Confidence 67778877776677778889999999999999999998888885 79999999999877 466777666
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 012910 419 SATLCGSLAAFGLFLRTKR 437 (453)
Q Consensus 419 ~~~~~~~i~~~~~~~~~~~ 437 (453)
.+.++..++.....++.|+
T Consensus 386 ~~~~~~~~~~~~~~~~~~~ 404 (417)
T PRK10489 386 FGLLIIGVLLLLVLGELRR 404 (417)
T ss_pred HHHHHHHHHHHHhcccccc
Confidence 6555554444444344443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.6e-27 Score=224.76 Aligned_cols=352 Identities=14% Similarity=0.058 Sum_probs=239.7
Q ss_pred ccccHHHHHHHHHHHHhhcC-cccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchh
Q 012910 9 LNTRWVSTVASIWIQCTSGS-LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQ 86 (453)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g 86 (453)
++++|..++.+.+..+..+. ....+.+.|.+.+++|.+..+.+++.+...++... .++.|++.||+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g----------- 80 (398)
T TIGR00895 12 SRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIG----------- 80 (398)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh-----------
Confidence 34456666666666665554 45677888999999999999999877777777765 599999999999
Q ss_pred hhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhhee
Q 012910 87 RLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIM 165 (453)
Q Consensus 87 ~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~ 165 (453)
||+++.++.++..++.+++.+. ++++.+++.|++.|++.+..++...+++.|++| ++|++++++.
T Consensus 81 -------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 146 (398)
T TIGR00895 81 -------RKRVLLWSILLFSVFTLLCALA-------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLM 146 (398)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHc-------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhH
Confidence 9999999999988888875443 588899999999999999999999999999998 7899999998
Q ss_pred cccCCCCc--------ccccccccCcccchhhhhhhhh--c---ccccCCCCcccCCCCC-------------CCCCCCC
Q 012910 166 KGSDSDRT--------SETSFCEEDELTDDPHEMHAEK--M---HVRQDPVGYHRLPSEP-------------DVGTDTN 219 (453)
Q Consensus 166 ~~~~~~~~--------~~~~~~~w~~~~~~~~~~~~~~--~---~l~~~~~~~~~~~~~~-------------~~~~~~~ 219 (453)
..+..++. ......+|+..+........+. . .++..++...++++++ +++.+..
T Consensus 147 ~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (398)
T TIGR00895 147 FCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSAL 226 (398)
T ss_pred hhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccc
Confidence 76554421 1112368888877653222111 1 1222211100000000 0000000
Q ss_pred cCCcCCCCCCccHHH-Hhh---hhHHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhh
Q 012910 220 DATTSLWGGDLDLLQ-AIC---TLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAG 295 (453)
Q Consensus 220 ~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G 295 (453)
++++++.....+..+ .++ .+..+.+++..++..........++|.+.++.|.++.+++...+...++..+++++.|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (398)
T TIGR00895 227 PEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFG 306 (398)
T ss_pred cccccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000011111122 222 2334444444444444555566677877778899999999999999999999999999
Q ss_pred hhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhh
Q 012910 296 YVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTIT 374 (453)
Q Consensus 296 ~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~ 374 (453)
+++||+ +|+...............+.. ..+....++..++.|++.+...+....++.|.+|+++++++.|+.+
T Consensus 307 ~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 380 (398)
T TIGR00895 307 WLADRL------GPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAI 380 (398)
T ss_pred HHHhhc------chHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 999999 455443333333333333332 3444556667788899999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhhhhh
Q 012910 375 IANPVGSYIFSVRVVGYI 392 (453)
Q Consensus 375 ~~~~~g~~i~g~~~~g~l 392 (453)
....+|.. ++|.+.|.+
T Consensus 381 ~~~~~g~~-~g~~~~G~l 397 (398)
T TIGR00895 381 GIGRLGAI-IGPILAGYL 397 (398)
T ss_pred HHHHHHHH-HHHHhHHhc
Confidence 99999986 699888865
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=222.74 Aligned_cols=343 Identities=10% Similarity=0.003 Sum_probs=232.8
Q ss_pred ccccccchhHHhhcCCCccch-----hHHHHHHHHhhh-hcchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHH
Q 012910 30 YTFSIYSPALKTTQHYDQTTL-----DTVSVFKDIGAN-TGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAI 103 (453)
Q Consensus 30 ~~~~~~~~~~~~~~~~s~~~~-----~~i~~~~~~~~~-~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~ 103 (453)
..+.++.|.+.+|+|++..+. +++.+...+... .+++.|++.||+| ||+++..+.+
T Consensus 31 ~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g------------------~r~~~~~~~~ 92 (408)
T PRK09874 31 SLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKG------------------RKIMLLRSAL 92 (408)
T ss_pred HHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhC------------------cHHHHHHHHH
Confidence 345667888889999987653 555555555555 5699999999999 9999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCc--cc-----
Q 012910 104 QCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRT--SE----- 175 (453)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~--~~----- 175 (453)
+.+++.+++.+. ++++.+++.|++.|++.+ ..+.....+.+++| ++|++++++...+..++. .+
T Consensus 93 ~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 164 (408)
T PRK09874 93 GMGIVMVLMGLA-------QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGL 164 (408)
T ss_pred HHHHHHHHHHHH-------hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888875443 589999999999999866 45667777888886 889999998865543321 11
Q ss_pred -ccccccCcccchhhhhhhhhcc--cccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHH-HHhh
Q 012910 176 -TSFCEEDELTDDPHEMHAEKMH--VRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFA-MACG 251 (453)
Q Consensus 176 -~~~~~w~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 251 (453)
....+|++.|........+... ....+++..+. ++++ + .+..+..+.+++++++...+. ..+.
T Consensus 165 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (408)
T PRK09874 165 LADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPV---SKKE-------M---LHMREVVTSLKNPKLVLSLFVTTLII 231 (408)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccc---cchh-------h---hHHHHHHHhCcCCchHHHHHHHHHHH
Confidence 1226788877665443222111 11111111100 0000 0 011123455677776553332 2222
Q ss_pred hcchhhecccHHHhhhhcCCChh----hhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHH
Q 012910 252 MGSGLATVNNISQIGGSLGYSSF----ETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLII 327 (453)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~g~s~~----~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~ 327 (453)
.........+++.+..+.+.+.. ..+...++.+++..++++..|+++||+ +|++.+..+..+..++.+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~------g~~~~~~~~~~~~~~~~~~~ 305 (408)
T PRK09874 232 QVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI------GPEKILITALIFSVLLLIPM 305 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------ccchhHHHHHHHHHHHHHHH
Confidence 22223344556667666533322 245566677888899999999999999 56666666666666555554
Q ss_pred H-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCcccc
Q 012910 328 A-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTG 406 (453)
Q Consensus 328 ~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~ 406 (453)
. .++.+...+..++.|++.+...+.....+.+..|++++|+.+++.+....+|.. +||.+.|.+.|..+
T Consensus 306 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~-~gp~~~G~l~~~~g--------- 375 (408)
T PRK09874 306 SFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNV-TGPLMGAAISANYG--------- 375 (408)
T ss_pred HHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHH-hhHHHHHHHHhhcc---------
Confidence 4 344455566677889999988888888888889989999999999999999985 79999999998876
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHH
Q 012910 407 THCFMLSFFIMGSATLCGSLAAFG 430 (453)
Q Consensus 407 ~~~~~~~f~~~~~~~~~~~i~~~~ 430 (453)
|+..|++.+++.+++.+....
T Consensus 376 ---~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 376 ---FRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHH
Confidence 899999999888887765544
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=228.33 Aligned_cols=402 Identities=11% Similarity=0.008 Sum_probs=238.0
Q ss_pred cccHHHHHHHHHHHHhhcC-cccccccchhHHhhc-----CCCccchhHHHHHHHHhhhhc-chhhhhhhccCCCCCCCC
Q 012910 10 NTRWVSTVASIWIQCTSGS-LYTFSIYSPALKTTQ-----HYDQTTLDTVSVFKDIGANTG-TLSGVLYTYSTSDHSSHH 82 (453)
Q Consensus 10 ~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~-----~~s~~~~~~i~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~ 82 (453)
+.++.++..+.+..+..+. ....+...|.+.+++ +.+..+.+++.+...++...+ +++|++.||+|
T Consensus 12 ~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~G------- 84 (502)
T TIGR00887 12 WQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLG------- 84 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------
Confidence 3445555556666666666 445666667776642 344556677888888888764 99999999999
Q ss_pred cchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccch
Q 012910 83 PRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTA 161 (453)
Q Consensus 83 p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~ 161 (453)
||+++.++.++..++.++++++ .......+++.++++|+++|++.|..++....++.|++| ++||++
T Consensus 85 -----------rr~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~ 152 (502)
T TIGR00887 85 -----------RKRVYGMELIIMIIATVASGLS-PGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAM 152 (502)
T ss_pred -----------cHHHHHHHHHHHHHHHHHHHHc-cCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHH
Confidence 9999999999999998885543 110000126789999999999999999999999999998 899999
Q ss_pred hheecccCCCCc----------cc---------------------ccccccCcccchhhhhhhhhc----ccccCCCCcc
Q 012910 162 VGIMKGSDSDRT----------SE---------------------TSFCEEDELTDDPHEMHAEKM----HVRQDPVGYH 206 (453)
Q Consensus 162 ~g~~~~~~~~~~----------~~---------------------~~~~~w~~~~~~~~~~~~~~~----~l~~~~~~~~ 206 (453)
+++......++. .+ ....+||..+........+.. .+++.|+...
T Consensus 153 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~ 232 (502)
T TIGR00887 153 MAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTA 232 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 998765543210 00 011368887754432222111 1333332110
Q ss_pred cCCCC-C--------------CCCCCCCcCCc-CCCCCCccHHHHhhh---hHHHH----HHHHHHhhhcchhhecccHH
Q 012910 207 RLPSE-P--------------DVGTDTNDATT-SLWGGDLDLLQAICT---LEFWI----LSFAMACGMGSGLATVNNIS 263 (453)
Q Consensus 207 ~~~~~-~--------------~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~ 263 (453)
.+.++ + +++.++.++.+ +++..+.++++++++ ++.+. .....+......++...+.|
T Consensus 233 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p 312 (502)
T TIGR00887 233 DVAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQK 312 (502)
T ss_pred HhCcchHHHHHHHHHHhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccH
Confidence 10000 0 00000000000 001112346666653 22211 12222333334445666788
Q ss_pred HhhhhcCCChhhhhH------------HHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH--h
Q 012910 264 QIGGSLGYSSFETSS------------LISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA--S 329 (453)
Q Consensus 264 ~~~~~~g~s~~~~~~------------~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~--~ 329 (453)
.++++.|++..+++. ...+..++.+++.++.++++||+ +||.++..+.++..++..++. .
T Consensus 313 ~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~------gRR~~l~~~~~~~~~~~~~l~~~~ 386 (502)
T TIGR00887 313 VILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII------GRKPIQLMGFFILTVLFFVLGFAY 386 (502)
T ss_pred HHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------cchhHHHHHHHHHHHHHHHHHHHH
Confidence 988888887543221 23344556777889999999999 666776666666665554443 1
Q ss_pred c--chhHHHHHHHHH-HHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCcccc
Q 012910 330 G--LPGALYAGSILV-GVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTG 406 (453)
Q Consensus 330 ~--~~~~~~~~~~l~-g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~ 406 (453)
. +.........+. .++..+..+....+..|.+|++.|+++.|+.+....++++ ++|.+.+.+.|..+..++ .+.
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~--~~~ 463 (502)
T TIGR00887 387 NHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAI-IGQFGFLYLAQHGDPTKG--YPT 463 (502)
T ss_pred HhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHH-HHHHHhhhhhcccccccc--ccc
Confidence 1 111111111111 1222223455667789999999999999999999999996 689899999885431000 000
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 012910 407 THCFMLSFFIMGSATLCGSLAAFGLFLRTKRFYN 440 (453)
Q Consensus 407 ~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~ 440 (453)
..++...|++.+++++++.+.. ++.++++++..
T Consensus 464 ~~~~~~~~~i~~~~~~~~~i~~-~~lpEt~~~~l 496 (502)
T TIGR00887 464 GIWMGHVLEIFALFMFLGILFT-LLIPETKGKSL 496 (502)
T ss_pred cccchHHHHHHHHHHHHHHHHh-eEeccCCCCCH
Confidence 0114567788887777776544 33355555433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-26 Score=200.69 Aligned_cols=362 Identities=12% Similarity=0.066 Sum_probs=271.6
Q ss_pred ccHHHHHHHHHHHHhhc-CcccccccchhHHhhcCCCccchhHHHHHHHHhhh-hcchhhhhhhccCCCCCCCCcchhhh
Q 012910 11 TRWVSTVASIWIQCTSG-SLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGAN-TGTLSGVLYTYSTSDHSSHHPRQQRL 88 (453)
Q Consensus 11 ~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~-~~~~~g~l~dr~g~~~~~~~p~~g~~ 88 (453)
+.|+.+...+++.+..= ...+.+++.+++++|+|+|.++.|++++.-.+... ++++..++..|+|
T Consensus 9 ~~~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g------------- 75 (395)
T COG2807 9 RPLLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFG------------- 75 (395)
T ss_pred CchHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh-------------
Confidence 33444444444443322 26778999999999999999999988888776665 6899999999999
Q ss_pred hhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcCCCccchhheeccc
Q 012910 89 TRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKGS 168 (453)
Q Consensus 89 ~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p~~rg~~~g~~~~~ 168 (453)
.++.+..+.++.++|..+= .. .+.+.++.+-.+.|.|.+..+......+-++|||+-+..+|++++.
T Consensus 76 -----~er~l~~~Llli~~G~~iR-----~~---~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~~~mtglYs~s 142 (395)
T COG2807 76 -----EERSLFLALLLIAAGILIR-----SL---GGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRVGLMTGLYSTS 142 (395)
T ss_pred -----hHHHHHHHHHHHHHHHHHH-----hc---ccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccchhhHHhHHHHH
Confidence 9999999999999999983 22 2678888999999999999999999999999999999999999766
Q ss_pred CCC----C---cccccc--cccCcccchhhhhhhhhcccccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhh
Q 012910 169 DSD----R---TSETSF--CEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTL 239 (453)
Q Consensus 169 ~~~----~---~~~~~~--~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (453)
.+. + ..|... .+||......+....+.. +.+.|...+++. +.. ..+..+..+++|+|
T Consensus 143 l~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl-~~WlPq~~r~~~--~~~-----------~~~~~~~~~vw~~~ 208 (395)
T COG2807 143 LGAGAALAAALAVPLAQHSGGWRGALGFWALLALLAL-LIWLPQALREQA--ASI-----------ATKLVSVRKVWRSP 208 (395)
T ss_pred HHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHH-HHHhhhcccccc--ccc-----------ccccccccccccCc
Confidence 544 1 223332 479987766544333222 223332111110 000 00112225689999
Q ss_pred HHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHH
Q 012910 240 EFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAA 319 (453)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~ 319 (453)
.-|.+.+.+.+.....+..+.|+|.++.|.|+|+.++|.+.++..+.+....+....+.+|.+ ++++.......+
T Consensus 209 ~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~-----n~r~~~~~~~~~ 283 (395)
T COG2807 209 LAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSK-----NQRPLVVLALLL 283 (395)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhc-----ccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999964 667777777777
Q ss_pred HHHHHHHHHhcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhcc-ccccchhhhhhhhhhhhhhhhhhhhhhhheeccCC
Q 012910 320 MSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGV-LQMGTIFNTITIANPVGSYIFSVRVVGYIYDREAS 398 (453)
Q Consensus 320 ~~i~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~ 398 (453)
+.++++.+........+...+++|++.|+.++.....+.+...+ ++.+...|+.+..+.+-.. +||.+.|++.|.+|+
T Consensus 284 ~l~G~~G~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa-~GP~l~G~lhDa~gs 362 (395)
T COG2807 284 MLVGLVGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAA-FGPWLFGFLHDATGS 362 (395)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHh-hhhhhHhHHHHhcCC
Confidence 77777776522222223336899999999999999888877653 4455566777755555553 699999999999998
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHHHHHH
Q 012910 399 GEGNKCTGTHCFMLSFFIMGSATLCGSLAAF 429 (453)
Q Consensus 399 ~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~ 429 (453)
|+..++....+.++..+..+
T Consensus 363 -----------w~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 363 -----------WSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred -----------hHHHHHHHHHHHHHHHHHHh
Confidence 89888887776666654443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-26 Score=226.96 Aligned_cols=335 Identities=13% Similarity=0.021 Sum_probs=245.1
Q ss_pred cccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHH
Q 012910 29 LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFA 107 (453)
Q Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~ 107 (453)
....++..|.+.+|+|.|..+.+++.+.+.++..+ .++.|++.||+| ||+++.++.++..+
T Consensus 18 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g------------------~r~~~~~~~~~~~~ 79 (485)
T TIGR00711 18 STIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFG------------------TRRLFLISTFAFTL 79 (485)
T ss_pred HHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhC------------------cHHHHHHHHHHHHH
Confidence 45567788999999999999999888888888876 499999999999 99999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCc--------ccccc
Q 012910 108 GYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRT--------SETSF 178 (453)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~--------~~~~~ 178 (453)
+.++++ ++ ++++.+++.|+++|++.+...+...+++.|++| ++|+++.++...+..++. .....
T Consensus 80 ~~~~~~-----~~--~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 152 (485)
T TIGR00711 80 GSLLCG-----VA--PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIEN 152 (485)
T ss_pred HHHHHh-----Cc--CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccC
Confidence 999844 44 589999999999999999999999999999997 899999998865543311 11223
Q ss_pred cccCcccchhhhhhhhhc--ccccCCCCcccCCCCCC---------------------CCCCCCcC--------------
Q 012910 179 CEEDELTDDPHEMHAEKM--HVRQDPVGYHRLPSEPD---------------------VGTDTNDA-------------- 221 (453)
Q Consensus 179 ~~w~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~---------------------~~~~~~~~-------------- 221 (453)
.+||+.|........+.. .....+++.+++..+.+ ++.+..++
T Consensus 153 ~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (485)
T TIGR00711 153 YHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAI 232 (485)
T ss_pred cCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHH
Confidence 789998876533322111 11111111111100000 00000000
Q ss_pred -----CcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhh
Q 012910 222 -----TTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAG 295 (453)
Q Consensus 222 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G 295 (453)
.+.+.+++....+.+++++++...+..++..........++|.++++ .|+++.+++.......++..+++++.|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g 312 (485)
T TIGR00711 233 IAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAG 312 (485)
T ss_pred HHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000111122467889999888877777777666677788989876 699999999999999999999999999
Q ss_pred hhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-h----cchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchh
Q 012910 296 YVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-S----GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIF 370 (453)
Q Consensus 296 ~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~----~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~ 370 (453)
++.||+ +|++.+..+..+..++..++. . .+.+......++.|++.+...+.....+.+..|+++++++.
T Consensus 313 ~l~~r~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~ 386 (485)
T TIGR00711 313 RMGDKI------DPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGS 386 (485)
T ss_pred HHHhhc------CcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHH
Confidence 999999 667777777777777666554 1 12234455567888888888777777778889999999999
Q ss_pred hhhhhhhhhhhhhhhhhhhhhheec
Q 012910 371 NTITIANPVGSYIFSVRVVGYIYDR 395 (453)
Q Consensus 371 g~~~~~~~~g~~i~g~~~~g~l~~~ 395 (453)
|+.+....+|+. +|+.+.+.+.++
T Consensus 387 ~~~~~~~~~g~~-ig~~i~g~~~~~ 410 (485)
T TIGR00711 387 SLSNFTRQLGGS-IGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 999999999996 688888888875
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-26 Score=217.67 Aligned_cols=321 Identities=13% Similarity=0.032 Sum_probs=227.4
Q ss_pred cccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHH
Q 012910 29 LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFA 107 (453)
Q Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~ 107 (453)
...+.+..|.+++|+|.|.++.+++.+.+.++... +++.|++.||+| ||+++..+.++..+
T Consensus 21 ~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g------------------~r~~~~~~~~~~~~ 82 (385)
T TIGR00710 21 IDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYG------------------RRPVLLLGLFIFAL 82 (385)
T ss_pred HHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcC------------------ChHHHHHHHHHHHH
Confidence 44556677999999999999999888888777775 599999999999 99999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCc--------ccccc
Q 012910 108 GYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRT--------SETSF 178 (453)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~--------~~~~~ 178 (453)
+.+++.+. ++++.+++.|+++|++.+...+....++.|++| ++|+++.++......++. .....
T Consensus 83 ~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 155 (385)
T TIGR00710 83 SSLGLALS-------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW 155 (385)
T ss_pred HHHHHHHH-------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98886554 689999999999999999999999999999997 789999999876554421 11122
Q ss_pred cccCcccchhhhhhhhhcc--cccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchh
Q 012910 179 CEEDELTDDPHEMHAEKMH--VRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGL 256 (453)
Q Consensus 179 ~~w~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (453)
.+|++.+............ ....++.++++ ++ ++.++...+.++.+++|+++...+...+......
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (385)
T TIGR00710 156 LSWHAIFAFLSLAGILLSALIFFILPETLPYE----AR--------IQISTYFETFLLLLKSKMFWGYALIYGASFGGFF 223 (385)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc----cc--------CCHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHH
Confidence 6788877665433222211 11122111100 00 0000112345677889998887776666555555
Q ss_pred hecccHHHhhh-hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHh----c-
Q 012910 257 ATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS----G- 330 (453)
Q Consensus 257 ~~~~~~~~~~~-~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~----~- 330 (453)
....+.|.+++ +.|.++.+.+...+...++..+++++.|++.||+ ++++.+..+..+..++..++.. .
T Consensus 224 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (385)
T TIGR00710 224 AFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW------GAKSLLRMGLILFAVSAVLLEITAILGL 297 (385)
T ss_pred HHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56666777776 6799999999999999999999999999999999 5555555555555544443321 1
Q ss_pred c-hhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhhee
Q 012910 331 L-PGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYD 394 (453)
Q Consensus 331 ~-~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~ 394 (453)
. .........+.|++.+...+.......|..| ++++++.++.+.....++.+.+| +.+.+.+
T Consensus 298 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~-~~~~~~~ 360 (385)
T TIGR00710 298 GSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGY-LVSLIHG 360 (385)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHH-HHHhccc
Confidence 1 1233344566788888888888888888877 67899999988777665555555 4554433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.3e-27 Score=221.43 Aligned_cols=331 Identities=11% Similarity=0.003 Sum_probs=240.9
Q ss_pred cccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHH
Q 012910 33 SIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFL 111 (453)
Q Consensus 33 ~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~ 111 (453)
.+..|.+.+|++.|..+.+++.+...++... +++.|+++||+| ||+++.++.++..++.++
T Consensus 19 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g------------------~r~~~~~~~~~~~~~~~~ 80 (365)
T TIGR00900 19 QVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYD------------------RKKVMIGADLIRAVLVAV 80 (365)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhc------------------hhHHHHHHHHHHHHHHHH
Confidence 3455678888999999999888888777765 699999999999 999999999988888887
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCcc--c------ccccccC
Q 012910 112 MWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRTS--E------TSFCEED 182 (453)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~~--~------~~~~~w~ 182 (453)
.++. . .....+++.+++.|+++|++.+...+...+++.|++| ++|++++++...+..++.. + ....+|+
T Consensus 81 ~~~~-~-~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~ 158 (365)
T TIGR00900 81 LPFV-A-LLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIK 158 (365)
T ss_pred HHHH-H-HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 6655 1 1111388999999999999999999999999999997 8999999998766554221 1 1226888
Q ss_pred cccchhhhhhhhhcc--cccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhec-
Q 012910 183 ELTDDPHEMHAEKMH--VRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATV- 259 (453)
Q Consensus 183 ~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 259 (453)
+.|............ .....++. +++ ++++ .++ +..++.....++.+++|.++...+..++.........
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (365)
T TIGR00900 159 WAIWVDAVGFAISALLIVSVRIPEL-AAS-EIQA-LSN----AVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIV 231 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccC-CCc-cccc-cch----hHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 887665332221111 11111111 000 0000 000 0001112245667888988887777666665555454
Q ss_pred ccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHh-c-chhHHH
Q 012910 260 NNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS-G-LPGALY 336 (453)
Q Consensus 260 ~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~-~~~~~~ 336 (453)
.+.|.+.++ .|.++.+.+.......++..+++++.+++.||. +|+..+..+..+..++.+.... + +.+...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF------KRMALMTGAIFVIGLAILVVGLTPPNFPLFL 305 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh------chhHHHHHHHHHHHHHHHHHHhhchhHHHHH
Confidence 677888876 799999999999999999999999999999999 5666666666666666555542 3 244556
Q ss_pred HHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccC
Q 012910 337 AGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREA 397 (453)
Q Consensus 337 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g 397 (453)
+..++.|++.+...+....++.|.+|++++++..|+.+....++.. ++|.+.|.+.|..|
T Consensus 306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~g~~~~g~l~~~~g 365 (365)
T TIGR00900 306 VLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWP-LGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcC
Confidence 6778889999988888899999999999999999999999999986 69999999988643
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=216.13 Aligned_cols=352 Identities=11% Similarity=-0.042 Sum_probs=225.8
Q ss_pred Chhhhhhhccc-cHHHHHHHHHHHHhhc--CcccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCC
Q 012910 1 MERLKQLRLNT-RWVSTVASIWIQCTSG--SLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTS 76 (453)
Q Consensus 1 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~ 76 (453)
|.+|++...++ .|..+...+....... ......+..|.+.+++|.|.++.++..+.+.++..+ ++++|+++||+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G- 79 (413)
T PRK15403 1 MQRMPRFFARHAATLFFPMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIG- 79 (413)
T ss_pred CCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcC-
Confidence 56776655333 3333333332222222 245667777899999999999999766666676664 599999999999
Q ss_pred CCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-
Q 012910 77 DHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP- 155 (453)
Q Consensus 77 ~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p- 155 (453)
||+++..+.++++++.+++.++ ++++.+++.|+++|++.+...+....++.|++|
T Consensus 80 -----------------rr~~l~~~~~~~~~~~~~~~~a-------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~ 135 (413)
T PRK15403 80 -----------------RRPVLITGALIFTLACAATLFT-------TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQ 135 (413)
T ss_pred -----------------chHHHHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 9999999999999999885543 699999999999999998777777777889997
Q ss_pred CCccchhheecccCCCCc--------ccccccccCcccchhhhhhhhhcc--cccCCCCcccCCCCCCCCCCCCcCCcCC
Q 012910 156 TYSGTAVGIMKGSDSDRT--------SETSFCEEDELTDDPHEMHAEKMH--VRQDPVGYHRLPSEPDVGTDTNDATTSL 225 (453)
Q Consensus 156 ~~rg~~~g~~~~~~~~~~--------~~~~~~~w~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (453)
+++++++++......++. ......+||+.|........+... ....|+...+ ++++ .+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~----~~~~-------~~~ 204 (413)
T PRK15403 136 TKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVKR----GAVP-------FSA 204 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCccc----cCCC-------CCh
Confidence 678898888766543321 111226899998776443332221 1222322110 0000 000
Q ss_pred CCCCccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhhc-CCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhc
Q 012910 226 WGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSL-GYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHV 304 (453)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~ 304 (453)
.....++++++|||.+|...+...+.......+....|.++++. |+++.+.++.......+..++..+.+++.++..
T Consensus 205 ~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~-- 282 (413)
T PRK15403 205 KSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPT-- 282 (413)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--
Confidence 01123567889999999988877776666666667778888765 999999999888888888888777777654332
Q ss_pred cccCchhHHHHHHHHHHHHHHHHH-----hcchh-HHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhh
Q 012910 305 KEWARPLFMVITLAAMSIGHLIIA-----SGLPG-ALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANP 378 (453)
Q Consensus 305 ~~~~r~~~~~~~~~~~~i~~~~~~-----~~~~~-~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 378 (453)
+++.. .....+..++..++. ..+.+ ..++..++.+++.+...+......-+. ....+|++.++.+....
T Consensus 283 ---~~~~~-~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~-~~~~~G~a~a~~~~~~~ 357 (413)
T PRK15403 283 ---EPRFI-WRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFS-NNLPKGTVSASLNMVIL 357 (413)
T ss_pred ---chhHH-HHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhHHHHHHHhcc-CCCCCcHHHHHHHHHHH
Confidence 22221 111111111111111 12222 235566777888877777766433221 22357899998887776
Q ss_pred hhhhhhhhhhhhhheecc
Q 012910 379 VGSYIFSVRVVGYIYDRE 396 (453)
Q Consensus 379 ~g~~i~g~~~~g~l~~~~ 396 (453)
.+.. .++...+++.+..
T Consensus 358 ~~~~-~~~~~~g~~~~~~ 374 (413)
T PRK15403 358 MVMA-VSVEIGRWLWFNG 374 (413)
T ss_pred HHHH-HHHHHHHHHHHcC
Confidence 6665 5777788887763
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=216.70 Aligned_cols=337 Identities=10% Similarity=-0.016 Sum_probs=228.4
Q ss_pred cHHHHHHHHHHHHhhcCcccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhh
Q 012910 12 RWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTR 90 (453)
Q Consensus 12 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~ 90 (453)
.+.++..+++..+.....+.+.+..|++++++|.|.++.+++.+.+.++... ++++|++.||+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g--------------- 69 (401)
T PRK11043 5 KGFLVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYG--------------- 69 (401)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcC---------------
Confidence 3444444545444444455556667889999999999999888888887775 599999999999
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccC
Q 012910 91 LLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSD 169 (453)
Q Consensus 91 ~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~ 169 (453)
||+++..+.++..++.+++.+. ++++.+++.|+++|++.+...+.....+.|++| ++++++.+......
T Consensus 70 ---~r~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (401)
T PRK11043 70 ---RKPVLLAGLSLFALGSLGMLWV-------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLV 139 (401)
T ss_pred ---CcHHHHHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 9999999999998888885543 589999999999999998888877888899997 56777766654332
Q ss_pred CCC--------cccccccccCcccchhhhhhhhhcccc-cCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhH
Q 012910 170 SDR--------TSETSFCEEDELTDDPHEMHAEKMHVR-QDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLE 240 (453)
Q Consensus 170 ~~~--------~~~~~~~~w~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (453)
+++ .......+|++.|.............. ..+++. + ++++ +++..++++.+++++
T Consensus 140 ~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~-----------~~~~~~~~~~~~~~~ 204 (401)
T PRK11043 140 ALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSK-K---ARKQ-----------SQDALTFKQLLKSKT 204 (401)
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCC-C---cccc-----------chHHHHHHHHHcChh
Confidence 221 111123689888776543333222111 111110 0 0000 011235678889998
Q ss_pred HHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHH---
Q 012910 241 FWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITL--- 317 (453)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~--- 317 (453)
++...+...+.......+..+.|.+.++.|+++.+.+.......++..+++++.+++.||+++ ++......
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~------~~~~~~~~~~~ 278 (401)
T PRK11043 205 YLGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGG------EQLLPWLLVLF 278 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH------HHHHHHHHHHH
Confidence 877665555544445555667888888889999999998888888999999999999999953 33322222
Q ss_pred HHHHHHHHHHH---hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhhee
Q 012910 318 AAMSIGHLIIA---SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYD 394 (453)
Q Consensus 318 ~~~~i~~~~~~---~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~ 394 (453)
.+..+...... .++.....+...+.+++.+..++.......+..| +++|++.|+.+.....++. .++.+.|.+.|
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~-~~~~~~g~l~~ 356 (401)
T PRK11043 279 AVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCF-LASLLVSALIS 356 (401)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHH-HHHHHHHHccC
Confidence 22222222222 1222333444566778888888887777777776 6899999999987777775 57778888877
Q ss_pred cc
Q 012910 395 RE 396 (453)
Q Consensus 395 ~~ 396 (453)
..
T Consensus 357 ~~ 358 (401)
T PRK11043 357 TP 358 (401)
T ss_pred CC
Confidence 53
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-26 Score=228.38 Aligned_cols=354 Identities=14% Similarity=0.047 Sum_probs=239.8
Q ss_pred cccccccchhHHhhcCCC---ccchhHHHHHHHHhhhhc-chhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHH
Q 012910 29 LYTFSIYSPALKTTQHYD---QTTLDTVSVFKDIGANTG-TLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQ 104 (453)
Q Consensus 29 ~~~~~~~~~~~~~~~~~s---~~~~~~i~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~ 104 (453)
.+..+.+.|.+.+|+|++ ..+.+++.+.+.++.+++ ++.|+++||+| ||+++.++.++
T Consensus 105 ~~~~~~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~G------------------rr~~~~~~~~~ 166 (505)
T TIGR00898 105 EYSYDTFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFG------------------RKKVLLLSTLV 166 (505)
T ss_pred EecCCcccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhcc------------------chHHHHHHHHH
Confidence 344457788999999998 888898888888888865 99999999999 99999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCcc--cc---cc
Q 012910 105 CFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRTS--ET---SF 178 (453)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~~--~~---~~ 178 (453)
.+++.++++++ ++++.+++.|++.|++.+...+....++.|++| ++|+++.++...+.+++.. +. ..
T Consensus 167 ~~i~~~~~~~~-------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 239 (505)
T TIGR00898 167 TAVSGVLTAFS-------PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFI 239 (505)
T ss_pred HHHHHHHHHHc-------ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998885443 699999999999999999999999999999997 7899999888655544221 11 11
Q ss_pred cccCcccchhhhhhhhhcc----cccCCCCcccCCCC--------------CCCCC----CCC-cCCcCCCCCCccHHHH
Q 012910 179 CEEDELTDDPHEMHAEKMH----VRQDPVGYHRLPSE--------------PDVGT----DTN-DATTSLWGGDLDLLQA 235 (453)
Q Consensus 179 ~~w~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~--------------~~~~~----~~~-~~~~~~~~~~~~~~~~ 235 (453)
.+||+.+........+... +++.|+....+.+. ..+.. +.. ++..++..++.+.+++
T Consensus 240 ~~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 319 (505)
T TIGR00898 240 PDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDL 319 (505)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHH
Confidence 3599888766433222111 22222100000000 00000 000 0000011123467889
Q ss_pred hhhhHHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHH
Q 012910 236 ICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVI 315 (453)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~ 315 (453)
+++|+++...+...+.+.........++.+..+.+.+. .....+.++..+++.++.+++.||+ +||..+..
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~l~dr~------grr~~~~~ 390 (505)
T TIGR00898 320 FRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGNI---YLDLFISGLVELPAKLITLLLIDRL------GRRYTMAA 390 (505)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCh---HHHHHHHHHHHHHHHHHHHHHHHHh------CCHHHHHH
Confidence 99998877766655544433333333344444555553 2334456778889999999999999 67777777
Q ss_pred HHHHHHHHHHHHH-hcch--hHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhh
Q 012910 316 TLAAMSIGHLIIA-SGLP--GALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYI 392 (453)
Q Consensus 316 ~~~~~~i~~~~~~-~~~~--~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l 392 (453)
+.++.+++.+++. .++. .......++.+++.+..++....+..|.+|++.|+++.|+.+....+|+. ++|.+.+ +
T Consensus 391 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~-i~p~i~~-~ 468 (505)
T TIGR00898 391 SLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSI-ISPFLVY-L 468 (505)
T ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHH-HHhHHHH-H
Confidence 7777777766554 2222 33344445566777777888889999999999999999999999999995 6888887 4
Q ss_pred eeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 012910 393 YDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGL 431 (453)
Q Consensus 393 ~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~ 431 (453)
+..+ +..++.+.+++.+++.++.+++
T Consensus 469 -~~~~------------~~~~~~~~~~~~~~~~~~~~~l 494 (505)
T TIGR00898 469 -GEKW------------LFLPLVLFGGLALLAGILTLFL 494 (505)
T ss_pred -HHHH------------HhhHHHHHHHHHHHHHHHHHcC
Confidence 3333 4667777777777776555544
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-25 Score=213.03 Aligned_cols=355 Identities=11% Similarity=-0.005 Sum_probs=245.9
Q ss_pred HHHHHhhcCccc-ccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCchHH
Q 012910 20 IWIQCTSGSLYT-FSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVV 97 (453)
Q Consensus 20 ~~~~~~~g~~~~-~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~ 97 (453)
+...+..|..+. .+++.|.+++++|+|..+.+++.+.+.++... +++.|++.||+| +|++
T Consensus 9 ~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G------------------~r~~ 70 (410)
T TIGR00885 9 TSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLS------------------YKAG 70 (410)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------------chHH
Confidence 344445566444 46888999999999999999888888777775 599999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCcc--
Q 012910 98 LLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRTS-- 174 (453)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~~-- 174 (453)
+.++.++++++.+++..+ ... ++++.+++.|++.|+|.+...+....++.+..| ++|++.+++.+...+++..
T Consensus 71 ~~~g~~l~~~g~~l~~~~--~~~--~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g 146 (410)
T TIGR00885 71 ILLGLFLYALGAFLFWPA--AEI--MNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIG 146 (410)
T ss_pred HHHHHHHHHHHHHHHHHH--Hhh--ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998875432 122 489999999999999999999999999998886 7788888887665544110
Q ss_pred -----cc---------------------------cccccCcccchhhhhhhhhcccc-cCCCCcccCCCCCCCCCCCCcC
Q 012910 175 -----ET---------------------------SFCEEDELTDDPHEMHAEKMHVR-QDPVGYHRLPSEPDVGTDTNDA 221 (453)
Q Consensus 175 -----~~---------------------------~~~~w~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~ 221 (453)
.. ...+||+.|.....+......+. ..+..+.++ ++++
T Consensus 147 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~---~~~~------ 217 (410)
T TIGR00885 147 MVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH---SDAK------ 217 (410)
T ss_pred HHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc---cccc------
Confidence 00 01358888866644333222211 111100000 0000
Q ss_pred CcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhhc--CCChhhhhHHHHHHHHHHHHHhhhhhhhhh
Q 012910 222 TTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSL--GYSSFETSSLISLWSIWNFLGRFGAGYVSD 299 (453)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~s~~~~~~~~~~~~i~~~ig~~~~G~l~D 299 (453)
++ ....+.++.+|+|+++...+..++..+......++++.+.++. +.+...++...+.......+||++++++.|
T Consensus 218 -~~--~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~ 294 (410)
T TIGR00885 218 -QI--SFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLIS 294 (410)
T ss_pred -cc--cchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 1112446788999999988888888788777778888888765 445555666777777888999999999999
Q ss_pred hhhhccccCchhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhh
Q 012910 300 YFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPV 379 (453)
Q Consensus 300 r~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 379 (453)
|+ ++++++.+...+..+..++....+.....+...+.|++.+..+|...+...+..+++....+.++.... +
T Consensus 295 r~------~~~~~l~i~~~~~~~~~ll~~~~~~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~ 366 (410)
T TIGR00885 295 YL------AAHKVLMAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--I 366 (410)
T ss_pred Hc------CHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--h
Confidence 99 556666666666666666655433334456677888999999999999999999865544344444432 7
Q ss_pred hhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHH
Q 012910 380 GSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLC 423 (453)
Q Consensus 380 g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~ 423 (453)
|+. +.|++.|.+.|..+... ..+++.+|++...+.+.
T Consensus 367 Gga-~~p~l~G~~~d~~~~~~------~~~~~~~~~~~~~~~~~ 403 (410)
T TIGR00885 367 GGG-IVPPLQGFIIDMKEIAA------APAVNTSFILPLLCFAV 403 (410)
T ss_pred ccc-hHHHHHHHHHHHhcccc------cCccchHHHHHHHHHHH
Confidence 775 68889999999642100 00167777765544433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=216.89 Aligned_cols=385 Identities=13% Similarity=-0.002 Sum_probs=229.1
Q ss_pred ChhhhhhhccccHHHHHHHHHHHHhhcCcccccccchhHHhhcCCCccchhHHHHHHHHhhh-hcchhhhhhhccCCCCC
Q 012910 1 MERLKQLRLNTRWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGAN-TGTLSGVLYTYSTSDHS 79 (453)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~-~~~~~g~l~dr~g~~~~ 79 (453)
|.+|...++++-|...+..++..+..+ ...+.+...+++++|+|..+++++.+...+... .+++.|+++||+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g---- 74 (420)
T PRK09528 1 MATMYYLKNPNYWIFSLFFFFFFFIWS--SWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLG---- 74 (420)
T ss_pred CccchhhcCcchHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----
Confidence 566766666666665444444443333 234455566788899999999977777766666 5699999999999
Q ss_pred CCCcchhhhhhccCchHHHHHHHHHHHHHHHHHHH-HHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcCCCc
Q 012910 80 SHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWA-SVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTYS 158 (453)
Q Consensus 80 ~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p~~r 158 (453)
||+++.++..+.+++...... ..............++.+++.|.+.....+....+ .+.+++++
T Consensus 75 --------------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 139 (420)
T PRK09528 75 --------------LKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAY-IERVSRRS 139 (420)
T ss_pred --------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhH-HHHHHhhc
Confidence 999988876666554432111 10000000011111223333333322222222222 23334567
Q ss_pred cchhheecccCCCCc--cc-----ccccccCcccchhhhhhhhhcc--cccCCCCcccCCCCCCCCCCCCcCCcCCCCCC
Q 012910 159 GTAVGIMKGSDSDRT--SE-----TSFCEEDELTDDPHEMHAEKMH--VRQDPVGYHRLPSEPDVGTDTNDATTSLWGGD 229 (453)
Q Consensus 159 g~~~g~~~~~~~~~~--~~-----~~~~~w~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (453)
|++.|......+++. .+ ....+|+..|........+... ....+++.+ ++...+++ . + +++....
T Consensus 140 g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~--~-~~~~~~~ 213 (420)
T PRK09528 140 GFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFFAKPDAPS-TAKVANAL--G--A-NASAVSL 213 (420)
T ss_pred cccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhcccccccc-hhhhccch--h--c-ccccccH
Confidence 777776655443321 11 1125788877665433222211 111111111 10000000 0 0 0111112
Q ss_pred ccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhh----cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhcc
Q 012910 230 LDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS----LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVK 305 (453)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~ 305 (453)
.+.++.+|+|++|.+.+...+..........+.|.++.+ .+.+..+.+...++..+...++.++.|+++||+
T Consensus 214 ~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~---- 289 (420)
T PRK09528 214 KDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI---- 289 (420)
T ss_pred HHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 345567889988766654444433333344456666543 356667888999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhh-hhhhhhhhhhh
Q 012910 306 EWARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNT-ITIANPVGSYI 383 (453)
Q Consensus 306 ~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~g~~i 383 (453)
++++.+..+.++..++.++.. .++++.++....+.+++.+...+....++.|.+|++.+++..+. .+....+|..
T Consensus 290 --g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~- 366 (420)
T PRK09528 290 --GAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAV- 366 (420)
T ss_pred --CcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHH-
Confidence 556666666666666666655 44555566666777777777666777888999999999888766 5677788885
Q ss_pred hhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 012910 384 FSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGL 431 (453)
Q Consensus 384 ~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~ 431 (453)
++|++.|.+.|..| |+..|...+++.++..++.+..
T Consensus 367 ig~~~~G~l~~~~G------------~~~~f~~~~~~~~i~~~~~~~~ 402 (420)
T PRK09528 367 FLSTLAGNLYDSIG------------FQGTYLILGGIVLLFTLISVFT 402 (420)
T ss_pred HHHHHHHHHHHhhC------------chHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999877 8999998888777766554443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.8e-26 Score=216.68 Aligned_cols=361 Identities=9% Similarity=-0.080 Sum_probs=241.2
Q ss_pred hhhhhccccHHHHHHHHHHHHhhcCcccccccchhHHhhcCCCccchhHHHHHHHHhhh-hcchhhhhhhccCCCCCCCC
Q 012910 4 LKQLRLNTRWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGAN-TGTLSGVLYTYSTSDHSSHH 82 (453)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~-~~~~~g~l~dr~g~~~~~~~ 82 (453)
|+++.+|..|..++..++.. .+.....+.+.+.+++++|+|..+++++.+...+... .+++.|+++||+|
T Consensus 1 ~~~~~~~~~~~l~~~~~~~~--~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g------- 71 (395)
T PRK10054 1 MNLSLRRSTSALLASSLLLT--IGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFD------- 71 (395)
T ss_pred CCCCCCchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------
Confidence 34444444444433333332 2223334445567888999999999977666655555 5699999999999
Q ss_pred cchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccch
Q 012910 83 PRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTA 161 (453)
Q Consensus 83 p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~ 161 (453)
+|+++.++.++..++.++++++ ++++.+++.|.+.|.+.+...+...+...|.+| ++|+++
T Consensus 72 -----------~k~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (395)
T PRK10054 72 -----------KKRYMLLAITAFASGFIAIPLV-------NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKI 133 (395)
T ss_pred -----------cchhHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHH
Confidence 9999999999888888876554 578888888989998888778888888888886 789999
Q ss_pred hheecccCCCCc--cc-----ccccccCcccchhhhhhhhhcc--cccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccH
Q 012910 162 VGIMKGSDSDRT--SE-----TSFCEEDELTDDPHEMHAEKMH--VRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDL 232 (453)
Q Consensus 162 ~g~~~~~~~~~~--~~-----~~~~~w~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (453)
.|+......++. .| ....+|+..|........+... ....+++++++ ++++ + +..+.
T Consensus 134 ~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~---~~~~-------~----~~~~~ 199 (395)
T PRK10054 134 FSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRSEKAI---ATET-------G----SVWSP 199 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhcccccc---ccch-------h----hhhhh
Confidence 988865544311 11 1125788888765433322211 11112111111 0000 0 01223
Q ss_pred HHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhh---hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCc
Q 012910 233 LQAICTLEFWILSFAMACGMGSGLATVNNISQIGG---SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWAR 309 (453)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r 309 (453)
++.+|+|+++...+..++.......+..+.+.+.. +.+.+....+.......+.....++..|++.||. ++
T Consensus 200 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~------~~ 273 (395)
T PRK10054 200 SVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA------NI 273 (395)
T ss_pred hhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC------Cc
Confidence 67788999888777766655554444445555553 4466666777888888777777788889999998 66
Q ss_pred hhHHHHHHHHHHHHHHHHHh--cchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhh
Q 012910 310 PLFMVITLAAMSIGHLIIAS--GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVR 387 (453)
Q Consensus 310 ~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~ 387 (453)
+..+..+..+..++...+.. ++.+.+.+...+.+++.+...|.....+.+..|++.+++.++..+ ...+|.. +||.
T Consensus 274 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~-~Gp~ 351 (395)
T PRK10054 274 RPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAA-INPL 351 (395)
T ss_pred hhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHH-HHHH
Confidence 66677777666666655542 333344556678888888777888888999999999999988655 4557775 7999
Q ss_pred hhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHH
Q 012910 388 VVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGS 425 (453)
Q Consensus 388 ~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 425 (453)
+.|.+.|+.| +...|.+.+.+..++.
T Consensus 352 ~~G~l~~~~g------------~~~~~~~~~~~~~~~~ 377 (395)
T PRK10054 352 VSGVILTTLP------------PWSLFVILALAIVAAW 377 (395)
T ss_pred HHHHHHHHcC------------hhhHHHHHHHHHHHHH
Confidence 9999999987 5667766655554444
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-25 Score=210.17 Aligned_cols=334 Identities=11% Similarity=-0.021 Sum_probs=223.1
Q ss_pred hhHHhhcCCCccchhHHHHHHHHhh-hhcchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHH-HHHHHHHHHHHHHH
Q 012910 37 PALKTTQHYDQTTLDTVSVFKDIGA-NTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLV-GAIQCFAGYFLMWA 114 (453)
Q Consensus 37 ~~~~~~~~~s~~~~~~i~~~~~~~~-~~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~-~~~~~~~~~~~~~~ 114 (453)
+.+++++|.|..+.+++.+.+.+.. +.+++.|.+.||+| ||+.+++ +.++..++.+++++
T Consensus 22 ~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g------------------~r~~~~~~~~~~~~~~~~~~~~ 83 (375)
T TIGR00899 22 LFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQG------------------DRKGLILFCCLLAALACLLFAW 83 (375)
T ss_pred HHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------------------CchHHHHHHHHHHHHHHHHHHh
Confidence 3578899999999997766665544 46799999999999 8776554 55555566666433
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccch--hheecccCCCCc--c------cccccccCc
Q 012910 115 SVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTA--VGIMKGSDSDRT--S------ETSFCEEDE 183 (453)
Q Consensus 115 ~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~--~g~~~~~~~~~~--~------~~~~~~w~~ 183 (453)
+ ++++.+++.|+++|.+.+...+.......|+.| ++|+++ .+....+.+++. . .....+||+
T Consensus 84 -----~--~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~ 156 (375)
T TIGR00899 84 -----N--RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTV 156 (375)
T ss_pred -----c--chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHH
Confidence 3 588888899999998888788877777778776 455533 354433332211 1 112368998
Q ss_pred ccchhhhhhhhhcc--cccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhheccc
Q 012910 184 LTDDPHEMHAEKMH--VRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNN 261 (453)
Q Consensus 184 ~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (453)
.|........+... ....|+..+ + ++++ + +..+.++.+++++++......++..........+
T Consensus 157 ~f~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~--------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (375)
T TIGR00899 157 MFLTAALAFVLCGVLVWLFLPSYPR--G-APGA--------L----TRLEVRGLLASRDTRLLFVACTLMWGCNILYIIN 221 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccc--C-cccc--------c----CcchhhhhhcCcchHHHHHHHHHHHHHHHHHHhh
Confidence 88776443322211 111222111 0 0000 0 0112344667777776665555544444444556
Q ss_pred HHHhhh-hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhHHHHHH
Q 012910 262 ISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYAGS 339 (453)
Q Consensus 262 ~~~~~~-~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~ 339 (453)
+|.+++ +.|.++.+.+...........+++++.|++.||+ +|++.+..+.++..+...... .++.+...+..
T Consensus 222 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (375)
T TIGR00899 222 MPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF------GKRRLMLLAALAGVAFYTGLAADNSLWALLMLQ 295 (375)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777764 5799999999888888888888999999999999 555555555555444444333 33444455556
Q ss_pred HHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHH
Q 012910 340 ILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGS 419 (453)
Q Consensus 340 ~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~ 419 (453)
.+.|++.+...+....++.|..| ++++++.++.+....+|.. ++|.+.|.+.|..+ |+..|.+.++
T Consensus 296 ~~~g~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~-~g~~~~g~~~~~~g------------~~~~~~~~~~ 361 (375)
T TIGR00899 296 LLNAIFIGILAGIGMLYFQDLMP-GRAGAATTLYTNTGRVGWI-IAGSVGGILAERWS------------YHAVYWFAIV 361 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcc------------chhHHHHHHH
Confidence 67788888877877788888887 5667999999988888885 79999999999876 7889988888
Q ss_pred HHHHHHHHHHH
Q 012910 420 ATLCGSLAAFG 430 (453)
Q Consensus 420 ~~~~~~i~~~~ 430 (453)
+.+++.++...
T Consensus 362 ~~~~~~~~~~~ 372 (375)
T TIGR00899 362 MLIVALFCLLL 372 (375)
T ss_pred HHHHHHHHHhe
Confidence 87777765443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.3e-26 Score=214.65 Aligned_cols=319 Identities=18% Similarity=0.137 Sum_probs=226.6
Q ss_pred cccccch-hHHhhcCCCccchhHHHHHHHHhhh-hcchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHH
Q 012910 31 TFSIYSP-ALKTTQHYDQTTLDTVSVFKDIGAN-TGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAG 108 (453)
Q Consensus 31 ~~~~~~~-~~~~~~~~s~~~~~~i~~~~~~~~~-~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~ 108 (453)
......| .+.+++|.|..+++++.+.+.++.. .+++.|++.||+| ||+++.++.++.+++
T Consensus 14 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g------------------~r~~l~~~~~~~~~~ 75 (352)
T PF07690_consen 14 IISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFG------------------RRRVLIIGLLLFALG 75 (352)
T ss_dssp HHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------------------CeeeEeehhhhhhhH
Confidence 3455567 8999999999999987777777666 5699999999999 999999999999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCc--------cccccc
Q 012910 109 YFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRT--------SETSFC 179 (453)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~--------~~~~~~ 179 (453)
.++..++ ++++.+++.|+++|++.+...+....++.|++| ++|++++++.....+++. ......
T Consensus 76 ~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~ 148 (352)
T PF07690_consen 76 SLLLAFA-------SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF 148 (352)
T ss_dssp HHHHHHH-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC
T ss_pred HHHhhhh-------hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc
Confidence 6654433 477788899999999999999999999999997 699999999977665522 112236
Q ss_pred ccCcccchhhhhhhhhccc--ccCCCCcccCCCCCCCCCCCCcCCcCCCCCCc-cHHHHhhhhHHHHHHHHHHhhhcchh
Q 012910 180 EEDELTDDPHEMHAEKMHV--RQDPVGYHRLPSEPDVGTDTNDATTSLWGGDL-DLLQAICTLEFWILSFAMACGMGSGL 256 (453)
Q Consensus 180 ~w~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (453)
+||+.|............+ ...++++++++.+++++.+ ++.+.+.. .++...+++.+|...+..++......
T Consensus 149 ~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (352)
T PF07690_consen 149 GWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESE-----SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFS 223 (352)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT-------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhhhhhhhHhhhhhhcccccccccccccc-----cccccccccccccccccchhhhhhhhhhHHHHHHH
Confidence 7999987775544433221 1222111111111111100 00001112 25677788877755555555555556
Q ss_pred hecccHHHhh-hhcCCC-hhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH----hc
Q 012910 257 ATVNNISQIG-GSLGYS-SFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA----SG 330 (453)
Q Consensus 257 ~~~~~~~~~~-~~~g~s-~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~----~~ 330 (453)
....++|.++ +++|.+ ..+.+...++..+...+++++.|+++||++ ++...........+....+. ..
T Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (352)
T PF07690_consen 224 GFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFG------RRRRLLIAILLLILGALGLLLLPFSS 297 (352)
T ss_dssp HHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHHHHHCCSHHHC
T ss_pred HhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------cHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6777888874 567999 789999999999999999999999999994 33333343333333333332 22
Q ss_pred chhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhh
Q 012910 331 LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSV 386 (453)
Q Consensus 331 ~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~ 386 (453)
+....++..++.|++.+...+....++.|.+|++++|++.|+.+...++++. ++|
T Consensus 298 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~-igP 352 (352)
T PF07690_consen 298 SPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGI-IGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHH-HHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HCC
Confidence 3445566778889999999999999999999999999999999999999985 565
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=208.96 Aligned_cols=322 Identities=15% Similarity=0.013 Sum_probs=221.9
Q ss_pred hHHhhcCCCccchhHHHHHHHHhhhhc-chhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHHHHHHH
Q 012910 38 ALKTTQHYDQTTLDTVSVFKDIGANTG-TLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASV 116 (453)
Q Consensus 38 ~~~~~~~~s~~~~~~i~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~ 116 (453)
.+++|.+....+.+.+.+.+.++++++ +++|.+.||++ ..+.+....+++++-.++.+..
T Consensus 71 g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~------------------ls~~l~~~~~~w~~~~~~~~~~- 131 (495)
T KOG2533|consen 71 GLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFP------------------LSKGLSVSGILWGLFGFLTAAV- 131 (495)
T ss_pred CCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCC------------------hHHHHHHHHHHHHHHHHHHHHH-
Confidence 366899999999998888888888865 99999999999 8999888888887777664433
Q ss_pred hcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCcc-------c-------cccccc
Q 012910 117 VGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRTS-------E-------TSFCEE 181 (453)
Q Consensus 117 ~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~~-------~-------~~~~~w 181 (453)
+|++.+++.|++.|+.++..+|....++..||. +|||+.+|++.+..+++.. - ....+|
T Consensus 132 ------~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW 205 (495)
T KOG2533|consen 132 ------HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW 205 (495)
T ss_pred ------hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc
Confidence 699999999999999999999999999999995 8999999999877666211 1 123899
Q ss_pred Ccccchhhhhhhhhcc-----cccCCCCcccCCCCCC-----CCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhh
Q 012910 182 DELTDDPHEMHAEKMH-----VRQDPVGYHRLPSEPD-----VGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACG 251 (453)
Q Consensus 182 ~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (453)
||.|.+.+.+.....+ ++..|++..-.++++. +..+.+.+...++.+...+++.+++|..|...+..++.
T Consensus 206 ~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~ 285 (495)
T KOG2533|consen 206 RWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFL 285 (495)
T ss_pred eeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHH
Confidence 9999998665543332 3444442211111110 00000000011113456778899999999999999999
Q ss_pred hcchhhecccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHH-HHHHHHHHHHHHHh
Q 012910 252 MGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVI-TLAAMSIGHLIIAS 329 (453)
Q Consensus 252 ~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~-~~~~~~i~~~~~~~ 329 (453)
....+++.+|+|.++++ .|+|..++..+.+.+.++++++.++.|+++||+..-. .++..... .++...++...+..
T Consensus 286 ~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~--~~~~~~~~~~~~~~~~g~~~l~~ 363 (495)
T KOG2533|consen 286 KLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIF--ARRLLFIVFLCLYAIIGAISLLA 363 (495)
T ss_pred hhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998 5799999999999999999999999999999953000 33333333 34444555444443
Q ss_pred c-chhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccch-hhhhhhhhhhhhhhhhh
Q 012910 330 G-LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTI-FNTITIANPVGSYIFSV 386 (453)
Q Consensus 330 ~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~-~g~~~~~~~~g~~i~g~ 386 (453)
. ..............+.....+.......+....+.+... .+....+.+.++.+.++
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~ 422 (495)
T KOG2533|consen 364 AAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQ 422 (495)
T ss_pred hccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhh
Confidence 2 233333333333344455555555666665554444333 33334555556554343
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=207.72 Aligned_cols=336 Identities=10% Similarity=-0.060 Sum_probs=240.9
Q ss_pred ccccchhHHhhcCCCccchhHHHHHHHHhhh-hcchhhhhhhccCCCCCCCCcchhhhhhccCchH----HHHHHHHHHH
Q 012910 32 FSIYSPALKTTQHYDQTTLDTVSVFKDIGAN-TGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWV----VLLVGAIQCF 106 (453)
Q Consensus 32 ~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~-~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~----~~~~~~~~~~ 106 (453)
..++.|.+.+|+|+|..+++++.+.+.+... .++++|+++||+| ||+ ++.++..++.
T Consensus 23 ~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~------------------~~~~~~~~~~~~~~l~~ 84 (382)
T TIGR00902 23 FLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDAN------------------HIIIALRLLALASAIFA 84 (382)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------------cHHHHHHHHHHHHHHHH
Confidence 4455678889999999999976666655555 5799999999998 533 3333322222
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcCCCccchhheecccCCCCc--cc------ccc
Q 012910 107 AGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKGSDSDRT--SE------TSF 178 (453)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p~~rg~~~g~~~~~~~~~~--~~------~~~ 178 (453)
+. . ...+ ++++.+++.|+++|.+.+...+...++..+ ++++|+++.|......+++. .| ...
T Consensus 85 ~~--~-----~~~~--~~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~ 154 (382)
T TIGR00902 85 AA--F-----SAGA--HNAWLLFIAIGLFALFFSAGMPIGDALANT-WQKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM 154 (382)
T ss_pred HH--H-----HHhh--hhHHHHHHHHHHHHHHHccchhHHHHHHHH-HHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1 2222 589999999999999998888877777654 46788998888765554422 11 122
Q ss_pred cccCcccchhhhhhhhhcccccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhe
Q 012910 179 CEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLAT 258 (453)
Q Consensus 179 ~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (453)
.+||..|................+++.++++ ++++ ++..+..+.++++|+|++|...+..++.......+
T Consensus 155 ~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--------~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~ 224 (382)
T TIGR00902 155 FDEQNILAILTAGLAFMLIGFLIKPTIPPKD--AIPE--------DESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAY 224 (382)
T ss_pred cChhHHHHHHHHHHHHHHHHHHcCCCCCCCc--cccc--------cccccchhHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 6899887665333222111111111111110 0000 00012235678999999999988888877777778
Q ss_pred cccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhHHHH
Q 012910 259 VNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYA 337 (453)
Q Consensus 259 ~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~ 337 (453)
..+.|.+.++.|.++.+.+...+...++.+++.++.+++.||+ +++..+..+.+...+...+.. .++.+.++.
T Consensus 225 ~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~------g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (382)
T TIGR00902 225 YGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNC------SARDLLLISAIACVGRWAIIGAIEAFPLIFL 298 (382)
T ss_pred HHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC------CHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Confidence 8888999999999999999999999999999999999999999 667778888888888887776 555566777
Q ss_pred HHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhh-hhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHH
Q 012910 338 GSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTIT-IANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFI 416 (453)
Q Consensus 338 ~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~ 416 (453)
...+.|+.++...+....++.+. |++++++..++.+ +..++|.. ++|.+.|.++|+.| + ..|..
T Consensus 299 ~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~-~g~~~~G~l~~~~g------------~-~~~~~ 363 (382)
T TIGR00902 299 LQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIA-IFTAFAGFIYPTLG------------A-GTFVF 363 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcc------------H-HHHHH
Confidence 78999999999999999999988 8888999999976 46678875 79999999999976 3 56777
Q ss_pred HHHHHHHHHH
Q 012910 417 MGSATLCGSL 426 (453)
Q Consensus 417 ~~~~~~~~~i 426 (453)
.+.+.+++.+
T Consensus 364 ~~~~~~~~~~ 373 (382)
T TIGR00902 364 MAIIAAAAFF 373 (382)
T ss_pred HHHHHHHHHH
Confidence 7777766543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-25 Score=209.77 Aligned_cols=319 Identities=13% Similarity=0.078 Sum_probs=214.9
Q ss_pred Ccccccccchh-HHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHH
Q 012910 28 SLYTFSIYSPA-LKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQC 105 (453)
Q Consensus 28 ~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~ 105 (453)
..+.++++.|. +++++|+|..+.+++.+...++..+ +++.|++.||+| ||+++.++.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g------------------~r~~~~~~~~~~ 77 (366)
T TIGR00886 16 VWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFG------------------PRYTTTLSLLLL 77 (366)
T ss_pred HHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhC------------------chHHHHHHHHHH
Confidence 35667888885 9999999999999888888777775 599999999999 999999999999
Q ss_pred HHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCc------c-cc
Q 012910 106 FAGYFLMWASVVGLIPRP-PVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRT------S-ET 176 (453)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~------~-~~ 176 (453)
.++.+++++. + +++.+++.|+++|++.+. ++....++.+++| ++|++++++......++. . +.
T Consensus 78 ~i~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l 149 (366)
T TIGR00886 78 AIPCLWAGLA-------VQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPI 149 (366)
T ss_pred HHHHHHHHHH-------hhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999886655 5 889999999999999664 5667888899997 789999998764332210 0 00
Q ss_pred -----------cccccCcccchh-hhhhhhhc--ccccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHH
Q 012910 177 -----------SFCEEDELTDDP-HEMHAEKM--HVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFW 242 (453)
Q Consensus 177 -----------~~~~w~~~~~~~-~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (453)
...+||+.|... .....+.. .....+++.++++++++.+.+.... ..+++...+.++.+++|++|
T Consensus 150 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 228 (366)
T TIGR00886 150 IGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARW-SVGTGALGDQLKVFRDRHTW 228 (366)
T ss_pred HHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccc-cccchhHHHHHHHHhccchh
Confidence 124799988332 22211111 1111111111100000000000000 00001111456788999999
Q ss_pred HHHHHHHhhhcchhhecccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHH
Q 012910 243 ILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMS 321 (453)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~ 321 (453)
...+..++.......+..+.|.++++ .|+++.+++...+...+.+.+++++.|+++||++ +++.+..+.....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g------~~~~~~~~~~~~~ 302 (366)
T TIGR00886 229 ILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLG------GARKLLMSFLGVA 302 (366)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhc------cchhHHHHHHHHH
Confidence 88887777766666777788888875 5999999999999999999999999999999995 3333344433333
Q ss_pred HHHHHHH--hc---chhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhh
Q 012910 322 IGHLIIA--SG---LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVG 380 (453)
Q Consensus 322 i~~~~~~--~~---~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 380 (453)
.+..++. .. +.....+...+.++..+...+...+.+.+..| +++|++.|+.+....+|
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 303 MGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 3333322 22 33333344455556666666677777888887 79999999998777665
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=207.87 Aligned_cols=316 Identities=9% Similarity=-0.080 Sum_probs=211.2
Q ss_pred ccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHH
Q 012910 30 YTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAG 108 (453)
Q Consensus 30 ~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~ 108 (453)
..+.+..|.+.+++|+|.++.+++.+.+.++... +++.|++.||+| ||+++..+.++.+++
T Consensus 8 ~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g------------------~~~~~~~~~~~~~i~ 69 (377)
T PRK11102 8 DMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFG------------------RKPVILGGTLVFALA 69 (377)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcC------------------ChHHHHHHHHHHHHH
Confidence 3455777899999999999999877777777765 599999999999 999999999999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCcc--c------cccc
Q 012910 109 YFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRTS--E------TSFC 179 (453)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~~--~------~~~~ 179 (453)
..++.+. ++++.+++.|+++|++.+...+...+++.|++| ++|++++++...+..++.. + ....
T Consensus 70 ~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 142 (377)
T PRK11102 70 AVACALA-------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF 142 (377)
T ss_pred HHHHHHH-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9886554 588999999999999999999999999999997 7899999998655443211 1 1125
Q ss_pred ccCcccchhhhhhhhhcc--cccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhh
Q 012910 180 EEDELTDDPHEMHAEKMH--VRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLA 257 (453)
Q Consensus 180 ~w~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (453)
+|++.|........+... ....++..+++ +++ + .+.++...+.++.+++++++...+..++.......
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (377)
T PRK11102 143 SWHAIFWVLALAAILAAALVFFFIPETLPKE---RRQ---P----FHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFS 212 (377)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhCCccCccc---ccC---C----CChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 788887665433322211 11222211100 000 0 00001123456778888888776666665555555
Q ss_pred ecccHHHhhh-hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHH-HHH--HH-hc-c
Q 012910 258 TVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIG-HLI--IA-SG-L 331 (453)
Q Consensus 258 ~~~~~~~~~~-~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~-~~~--~~-~~-~ 331 (453)
+..+.|.++. +.|+++.+.+.......++..+++++.|++.||+ +|++.+..+..+..+. ..+ .. .+ +
T Consensus 213 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (377)
T PRK11102 213 FLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV------GALNMLRFGLWIQFIMGIWLVVSALLDLG 286 (377)
T ss_pred HHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5566676665 4699999999999999999999999999999999 5555555555443222 222 11 11 2
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhh-hhhhhhhhhhh
Q 012910 332 PGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIAN-PVGSYIFSVRV 388 (453)
Q Consensus 332 ~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~g~~i~g~~~ 388 (453)
.+...+...+.+.+.+...+.....+.|..| ++++++.++.+... .+|. +.++.+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~-~~g~~~ 342 (377)
T PRK11102 287 FWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGA-IVGALL 342 (377)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHH-HHHHHH
Confidence 2223333334444444444445556667666 88899998877543 4554 356544
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=208.93 Aligned_cols=318 Identities=9% Similarity=0.007 Sum_probs=208.4
Q ss_pred cccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHH
Q 012910 29 LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFA 107 (453)
Q Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~ 107 (453)
.+.+.+..|.+.+|+|.|..+.+++.+.+.++... +++.|++.||+| ||+++.++.++..+
T Consensus 19 ~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g------------------~r~~l~~~~~~~~i 80 (392)
T PRK10473 19 IDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSG------------------RKPVAIPGAALFII 80 (392)
T ss_pred HHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhC------------------ChHHHHHHHHHHHH
Confidence 34445778999999999999999887888777775 599999999999 99999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCc--cc------ccc
Q 012910 108 GYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRT--SE------TSF 178 (453)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~--~~------~~~ 178 (453)
+..++.+. ++++.+++.|+++|++.+..++....++.|++| ++|+++.++......++. .| ...
T Consensus 81 ~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~ 153 (392)
T PRK10473 81 ASLLCSLA-------ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK 153 (392)
T ss_pred HHHHHHHh-------CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 88885543 588888999999999999999999999999997 899999998765443311 11 123
Q ss_pred cccCcccchhhhhhhhhcc--cccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchh
Q 012910 179 CEEDELTDDPHEMHAEKMH--VRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGL 256 (453)
Q Consensus 179 ~~w~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (453)
.+|++.|........+... ....++.++++ +++ +.....+.++.+++++++...+...+......
T Consensus 154 ~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (392)
T PRK10473 154 FPWQSLFYTMAAMGILVLLLSLFILKETRPAR---APA----------ASSKPRENSESLLNRFFLSRLVITTLSVTVIL 220 (392)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHcCCCCCcc---cCC----------ccchHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 6788877666433222211 11122211110 000 00112234567888887766555544444433
Q ss_pred hecccHHHhhh-hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHh-cchhH
Q 012910 257 ATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS-GLPGA 334 (453)
Q Consensus 257 ~~~~~~~~~~~-~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~~~~~ 334 (453)
.+..+.|.+.+ +.|+++.+.+...+..+++.++++++.+++.||+ +|++.+..+..+..++...+.. .....
T Consensus 221 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (392)
T PRK10473 221 TFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF------KPRTLMLTSQVLFLAAGITLALSPSHAV 294 (392)
T ss_pred HHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566654 5799999999999999999999999999999999 5666677776666666655442 22223
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHhHhhccccc-cchhhhhhhhhhhhhhhhhhhhhhhheeccC
Q 012910 335 LYAGSILVGVCYGSQWSLMPTIASEIFGVLQM-GTIFNTITIANPVGSYIFSVRVVGYIYDREA 397 (453)
Q Consensus 335 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~-g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g 397 (453)
......+.+.+.+...+.. ...+..|.+++ +.+.++. .++.. +++.+.+.+.+..|
T Consensus 295 ~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~~~g~~~~~~----~~~~~-~g~~~~~~l~~~~g 351 (392)
T PRK10473 295 SLFGITLICAGFSVGFGVA--MSQALGPFSLRAGVASSTL----GIAQV-CGSSLWIWLAAVLG 351 (392)
T ss_pred HHHHHHHHHHHHHHHhHHH--HHHHhccCcccccHHHHHH----HHHHH-HHHHHHHHHHHHhc
Confidence 3333344444444433332 33444454333 3333333 34442 35556777777665
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.8e-25 Score=206.57 Aligned_cols=322 Identities=18% Similarity=0.146 Sum_probs=258.6
Q ss_pred cccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHH
Q 012910 29 LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFA 107 (453)
Q Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~ 107 (453)
....+...|.+.+++|.+..+.+++.+...+.... .++.|++.||+| ||+.+.++.++..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g------------------~r~~~~~~~~~~~~ 76 (352)
T cd06174 15 RGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFG------------------RRRVLLLGLLLFAL 76 (352)
T ss_pred hhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC------------------CchhhHHHHHHHHH
Confidence 45567778889999999999999887777777765 599999999999 99999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCcc--c------ccc
Q 012910 108 GYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRTS--E------TSF 178 (453)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~~--~------~~~ 178 (453)
+.+++.+. ++++.+++.|++.|++.+...+....++.|++| |+|++++++.....+++.. + ...
T Consensus 77 ~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 149 (352)
T cd06174 77 GSLLLAFA-------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES 149 (352)
T ss_pred HHHHHHHh-------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99886554 589999999999999999999999999999997 6999999998766554221 1 112
Q ss_pred cccCcccchhhhhhhhhcccccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhe
Q 012910 179 CEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLAT 258 (453)
Q Consensus 179 ~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (453)
.+|++.+................. + |+++...+..++........
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~-~~~~~~~~~~~~~~~~~~~~ 194 (352)
T cd06174 150 LGWRWLFLILAILGLLLALLLLFL----------------------------------L-RLLLLLALAFFLLSFGYYGL 194 (352)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH----------------------------------H-HHHHHHHHHHHHHHhHHHHH
Confidence 457777766533322221111000 0 56777777777777777777
Q ss_pred cccHHHhhhhc-CCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchh-HHHHHHHHHHHHHHHHH-hcchhHH
Q 012910 259 VNNISQIGGSL-GYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPL-FMVITLAAMSIGHLIIA-SGLPGAL 335 (453)
Q Consensus 259 ~~~~~~~~~~~-g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~-~~~~~~~~~~i~~~~~~-~~~~~~~ 335 (453)
..+.+.+.++. |.++.+.+...+...++..+++++.+++.||+ +|++ .+..+..+..++.+... .++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 268 (352)
T cd06174 195 LTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL------GRRRLLLLIGLLLAALGLLLLALAPSLALL 268 (352)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhhHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 88888888876 99999999999999999999999999999999 5555 67777777777777665 3445566
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHH
Q 012910 336 YAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFF 415 (453)
Q Consensus 336 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~ 415 (453)
.+...+.|++.+...+....++.|..|++++++..|+.+....++.. ++|.+.|.+.|..+ |+..++
T Consensus 269 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~i~g~l~~~~~------------~~~~~~ 335 (352)
T cd06174 269 LVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGA-LGPLLAGLLLDTGG------------YGGVFL 335 (352)
T ss_pred HHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccC------------cchHHH
Confidence 77788899999999999999999999999999999999999999996 68999999998766 789999
Q ss_pred HHHHHHHHHHHHHH
Q 012910 416 IMGSATLCGSLAAF 429 (453)
Q Consensus 416 ~~~~~~~~~~i~~~ 429 (453)
+.+++.+++.+...
T Consensus 336 ~~~~~~~i~~i~~~ 349 (352)
T cd06174 336 ILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHhe
Confidence 98888888765543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.7e-25 Score=210.45 Aligned_cols=338 Identities=10% Similarity=-0.032 Sum_probs=221.6
Q ss_pred ccccccchhHHhhcC--CCccchhHHHHH--HHH---hhh-hcchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHH
Q 012910 30 YTFSIYSPALKTTQH--YDQTTLDTVSVF--KDI---GAN-TGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVG 101 (453)
Q Consensus 30 ~~~~~~~~~~~~~~~--~s~~~~~~i~~~--~~~---~~~-~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~ 101 (453)
+.++...+.+.+++. .++.+.+.+.+. +.. ... .+++.|+++||+| ||+++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g------------------~r~~l~~~ 71 (394)
T TIGR00883 10 YLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIG------------------RKKTLVIT 71 (394)
T ss_pred HHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhh------------------hHHHHHHH
Confidence 344555566666654 445555533222 122 212 3488899999999 99999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCHH--------HHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCC
Q 012910 102 AIQCFAGYFLMWASVVGLIPRPPVP--------VMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDR 172 (453)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~ 172 (453)
.++..++.++++++ +++. .+++.|+++|++.+...+....++.|++| ++|+++.++...+..++
T Consensus 72 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G 144 (394)
T TIGR00883 72 LLMMGIGTLLIGLL-------PSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVG 144 (394)
T ss_pred HHHHHHHHHHHhhC-------CChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHH
Confidence 99999999885443 3443 47789999999999999999999999996 89999988886655442
Q ss_pred cc--c--------------ccccccCcccchhhhhhhhhccccc-CCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHH
Q 012910 173 TS--E--------------TSFCEEDELTDDPHEMHAEKMHVRQ-DPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQA 235 (453)
Q Consensus 173 ~~--~--------------~~~~~w~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (453)
.. + ....+||+.|............+.. .+++...++ ++ ++++....+.++.
T Consensus 145 ~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--------~~~~~~~~~~~~~ 213 (394)
T TIGR00883 145 LLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEK---AQ--------EKHKKKRGPIRET 213 (394)
T ss_pred HHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHH---HH--------hccccccCCHHHH
Confidence 10 0 1235788777654333222211211 111110000 00 0001122345677
Q ss_pred hhhhH--HHHHHHHHHhhhcchhhecccHHHhhh-hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhH
Q 012910 236 ICTLE--FWILSFAMACGMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLF 312 (453)
Q Consensus 236 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~ 312 (453)
+++++ ++......++..........++|.+.+ +.|.++.+.+.......+.+.+++++.|+++||+ +|++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~------g~~~~ 287 (394)
T TIGR00883 214 LTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI------GRRPV 287 (394)
T ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh------chHHH
Confidence 77765 666666666655555566677888884 5799999999999999999999999999999999 44444
Q ss_pred HHHHHHHH-HHHHHH---HH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhh-hhhhhhhhhhhh
Q 012910 313 MVITLAAM-SIGHLI---IA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTIT-IANPVGSYIFSV 386 (453)
Q Consensus 313 ~~~~~~~~-~i~~~~---~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~i~g~ 386 (453)
+.....+. ..+... .. ..+.+.......+.+++.+...+...+.+.|.+|+++|+++.|+.+ ....+|+. ++|
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~-~~p 366 (394)
T TIGR00883 288 LIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGG-FAP 366 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhh-HHH
Confidence 44333222 222111 11 1233344455667788888888889999999999999999999854 55667774 689
Q ss_pred hhhhhheeccCCCCCCccccccchHHHHHHHHHHH
Q 012910 387 RVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSAT 421 (453)
Q Consensus 387 ~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~ 421 (453)
.+.|.+.|+.|. |+..++....+.
T Consensus 367 ~~~g~l~~~~g~-----------~~~~~~~~~~~~ 390 (394)
T TIGR00883 367 YIAAALVAMTGD-----------WYAIGYYLAALA 390 (394)
T ss_pred HHHHHHHHHcCc-----------chhHHHHHHHHH
Confidence 999999998875 565555555433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=211.97 Aligned_cols=355 Identities=12% Similarity=0.006 Sum_probs=233.8
Q ss_pred cccccchhHHhhcCCCccchhHHHHHHHHhhhhcchhhhhhhccCCCCCCCCcchhhhhhccCchH-HHHHHHHHHHHHH
Q 012910 31 TFSIYSPALKTTQHYDQTTLDTVSVFKDIGANTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWV-VLLVGAIQCFAGY 109 (453)
Q Consensus 31 ~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~-~~~~~~~~~~~~~ 109 (453)
..+...|.+.++.|.|.++++.++..... ....+++|+++||+.. .|+|||+ .+.++.+..+++.
T Consensus 30 ~~~~~l~~~l~~~g~~~~~ig~~~~~~~~-~~~~~l~gpl~Dr~~~-------------~~~Grrr~~ll~~~i~~~~~~ 95 (491)
T PRK11010 30 LTSGTLQAWMTVENIDLKTIGFFSLVGQA-YVFKFLWSPLMDRYTP-------------PFLGRRRGWLLATQLLLLVAI 95 (491)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccc-------------cCCCCchHHHHHHHHHHHHHH
Confidence 44555677888889999999975333333 3467999999999931 1223666 4667777777777
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCc--------cccc-cc
Q 012910 110 FLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRT--------SETS-FC 179 (453)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~--------~~~~-~~ 179 (453)
.++++. .+.++++.+.+.+++.|++.+...+...+++.|++| +||+++.++...+..++. .... ..
T Consensus 96 ~~~a~~----~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~ 171 (491)
T PRK11010 96 AAMGFL----EPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYL 171 (491)
T ss_pred HHHHHc----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 664432 111478888899999999999999999999999997 899999999876654421 1112 25
Q ss_pred ccCcccchhhhhhhhhcccc-cCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhe
Q 012910 180 EEDELTDDPHEMHAEKMHVR-QDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLAT 258 (453)
Q Consensus 180 ~w~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (453)
+||..|........+..... ..++.. +. +++++ +.++....++++.+++++.|...+..++........
T Consensus 172 GWr~~f~i~a~l~ll~~l~~~~~~e~~--~~-~~~~~-------~~~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~ 241 (491)
T PRK11010 172 GWQGMYWLMAALLIPCIIATLLAPEPT--DT-IPVPK-------TLEQAVVAPLRDFFGRNNAWLILLLIVLYKLGDAFA 241 (491)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCc--cc-ccccc-------chhhhHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHH
Confidence 89999987654433222111 111111 00 00000 000011234667787887776665555544444444
Q ss_pred cccHHHhh-hhcCCChhhhhHHHH-HHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHH---HHh--cc
Q 012910 259 VNNISQIG-GSLGYSSFETSSLIS-LWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLI---IAS--GL 331 (453)
Q Consensus 259 ~~~~~~~~-~~~g~s~~~~~~~~~-~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~---~~~--~~ 331 (453)
..+.++++ ++.|+++.+.+.... ...++.++|.+++|+++||++ +++.+..+.++..+..+. +.. ++
T Consensus 242 ~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g------~~~~l~i~~~l~~l~~l~~~~l~~~~~~ 315 (491)
T PRK11010 242 MSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLS------LFRALMIFGILQGVSNAGYWLLSITDKN 315 (491)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55666776 458999999999875 556899999999999999994 444444443333332222 222 22
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchH
Q 012910 332 PGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFM 411 (453)
Q Consensus 332 ~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~ 411 (453)
...+....++..++.+...+...+...+..+++..++.+|+.+....+|.. +++++.|.+.|..| |+
T Consensus 316 ~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~-~~~~~~G~l~~~~G------------~~ 382 (491)
T PRK11010 316 LYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRV-YVGPVAGWFVEAHG------------WP 382 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhC------------hH
Confidence 223333444545555555566678888999989999999999988899986 46668999999877 89
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 012910 412 LSFFIMGSATLCGSLAAFGLF 432 (453)
Q Consensus 412 ~~f~~~~~~~~~~~i~~~~~~ 432 (453)
..|.+.+++.+++.++...++
T Consensus 383 ~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 383 TFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888877666554
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=188.63 Aligned_cols=340 Identities=11% Similarity=0.009 Sum_probs=249.0
Q ss_pred HHHHHHHhhcC-cccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCch
Q 012910 18 ASIWIQCTSGS-LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPW 95 (453)
Q Consensus 18 ~~~~~~~~~g~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r 95 (453)
.+....+..|+ ...-+++.|.+++.+++|..|.+++..++..++.. +++.|++.+|+| +|
T Consensus 17 ~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~g------------------yk 78 (422)
T COG0738 17 LLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLG------------------YK 78 (422)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhh------------------hH
Confidence 33344444666 44567899999999999999999988888888875 599999999999 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCcc
Q 012910 96 VVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRTS 174 (453)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~~ 174 (453)
+.+++|..++++|..+++-+ ++..+|..++++-++.|.|.+...+.++.++....| ++...-+++..+.++++..
T Consensus 79 ~gi~lgL~l~avg~~lF~pA----a~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~ 154 (422)
T COG0738 79 AGIVLGLLLYAVGAALFWPA----ASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAI 154 (422)
T ss_pred HHHHHHHHHHHHHHHHHhhh----hhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHH
Confidence 99999999999999996533 112588999999999999999999999999999986 5667777777777777321
Q ss_pred --cc------c-----------c--------cccCcccchhhhhhhhhcccccCCCCcccCCCCCCCCCCCCcCCcCCCC
Q 012910 175 --ET------S-----------F--------CEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWG 227 (453)
Q Consensus 175 --~~------~-----------~--------~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (453)
|. . . ..+++.|........+........+....++.++++ .+.
T Consensus 155 ~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~----------~~~ 224 (422)
T COG0738 155 LGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSL----------GAS 224 (422)
T ss_pred HHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccc----------ccc
Confidence 10 0 0 234445544433333332221111100001100000 001
Q ss_pred CCccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q 012910 228 GDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKE 306 (453)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~ 306 (453)
.+....+++++|+++.-.+..+++.+......++++.++++ .|.++.+++...+.+.++.++||+++-++..|+
T Consensus 225 ~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~----- 299 (422)
T COG0738 225 GSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI----- 299 (422)
T ss_pred ccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 11156889999999999999999999999999999999988 799999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhh
Q 012910 307 WARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSV 386 (453)
Q Consensus 307 ~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~ 386 (453)
+..+.+....++..+.++.....+........++.|++.+..+|+..+...+..| ++...+.++..+ ..+|+. +-|
T Consensus 300 -~~~k~Laf~a~~~ill~~~~~l~~g~v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~~l~m-aivGGA-iiP 375 (422)
T COG0738 300 -KPEKYLAFYALIAILLLLAVALIGGVVALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSGLLVM-AIVGGA-IIP 375 (422)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhHHHHHHHHHHHHhccC-ccccccceeeee-heecch-HHH
Confidence 5555666655555444444443232445566788899999999999999999999 665555555544 445554 468
Q ss_pred hhhhhheeccCC
Q 012910 387 RVVGYIYDREAS 398 (453)
Q Consensus 387 ~~~g~l~~~~g~ 398 (453)
++.|++.|+.|.
T Consensus 376 ~l~G~i~d~~g~ 387 (422)
T COG0738 376 PLQGVIADMFGI 387 (422)
T ss_pred HHHHHHHHhhhh
Confidence 899999999874
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-24 Score=205.61 Aligned_cols=320 Identities=13% Similarity=-0.002 Sum_probs=219.5
Q ss_pred cccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHH
Q 012910 29 LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFA 107 (453)
Q Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~ 107 (453)
.+.+.+..|.+.+++|+|..+.+++.+.+.++..+ +++.|+++||+| ||+++.++..+..+
T Consensus 24 ~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g------------------rr~~~~~~~~~~~~ 85 (394)
T PRK11652 24 QTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVG------------------RRPVILVGMSIFIL 85 (394)
T ss_pred HHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcC------------------ChHHHHHHHHHHHH
Confidence 34455667999999999999999877777777775 599999999999 99999999999988
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCc--------ccccc
Q 012910 108 GYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRT--------SETSF 178 (453)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~--------~~~~~ 178 (453)
+.+++.+. ++++.+++.|+++|++.+...+.......|+++ +++++++++...+..++. .....
T Consensus 86 ~~~~~~~~-------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~ 158 (394)
T PRK11652 86 GTLVALFA-------HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL 158 (394)
T ss_pred HHHHHHHH-------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88885544 589999999999999999888877788888887 788888888755543311 11122
Q ss_pred cccCcccchhhhhhhhhcc--cccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchh
Q 012910 179 CEEDELTDDPHEMHAEKMH--VRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGL 256 (453)
Q Consensus 179 ~~w~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (453)
.+||+.|............ ....+++++ ++++ ++ +...++++.+++|+++...+..+.......
T Consensus 159 ~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~----~~~~--------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (394)
T PRK11652 159 FGWRACYLFLLLLGAGVTFSMARWMPETRP----ADAR--------RT--RVLASYRTLLSNRRFNCYLLMLIGTLAGIA 224 (394)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHhCCccCc----cccc--------hh--HHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 6899888766433322211 122222110 0000 00 112345678888888766655544443333
Q ss_pred hecccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHH-HHHHHHHHHHHHHH---hcc
Q 012910 257 ATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMV-ITLAAMSIGHLIIA---SGL 331 (453)
Q Consensus 257 ~~~~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~-~~~~~~~i~~~~~~---~~~ 331 (453)
.+....+.++++ +|.++.+.+.......++..++.++.+++.||.+ +..... .......+...... ..+
T Consensus 225 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (394)
T PRK11652 225 VFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFS------TLMWQSVICCLLAGLLMWIPGWFGVMN 298 (394)
T ss_pred HHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 444455667766 7999999999888888888888888888888884 222222 22222222222211 123
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheec
Q 012910 332 PGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDR 395 (453)
Q Consensus 332 ~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~ 395 (453)
.+.......+.+++.+...+.......|.+| +++++..++.+....+|.. +++.+.+.+.+.
T Consensus 299 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~-~~~~~~~~~~~~ 360 (394)
T PRK11652 299 VWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSG-LAALLSAMLPQT 360 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHH-HHHHHHHHccCC
Confidence 3445556677888888888988888889887 6889999999988888886 677777776554
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.6e-25 Score=200.04 Aligned_cols=363 Identities=13% Similarity=-0.037 Sum_probs=240.1
Q ss_pred cccHHHHHHHHHHHHhh-cCcccccccchhHHhhcCCCccchhHHHHHHHHhhh-hcchhhhhhhccCCCCCCCCcchhh
Q 012910 10 NTRWVSTVASIWIQCTS-GSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGAN-TGTLSGVLYTYSTSDHSSHHPRQQR 87 (453)
Q Consensus 10 ~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~-~~~~~g~l~dr~g~~~~~~~p~~g~ 87 (453)
++.++.++..++.++.. ...|...-..+.+++.+|+++++.|++++.+.+... ++|++|++.|||.
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryN------------ 96 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYN------------ 96 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcC------------
Confidence 34445555555555554 447888888899999999999999988888877776 5699999999999
Q ss_pred hhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheec
Q 012910 88 LTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMK 166 (453)
Q Consensus 88 ~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~ 166 (453)
||.++.+|..++.++++++++. ..||++++.|.+.|+|++...+.+.+.++|.|| ++|++++++..
T Consensus 97 ------R~~v~~vG~~iW~~Av~~~~fs-------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify 163 (493)
T KOG1330|consen 97 ------RKRVIAVGIFIWTLAVFASGFS-------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFY 163 (493)
T ss_pred ------cceEEeeHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhh
Confidence 9999999999999999995544 589999999999999999999999999999998 89999999987
Q ss_pred ccCCCCc--------c-cccccccCcccchhhhhhhhhcccccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhh
Q 012910 167 GSDSDRT--------S-ETSFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAIC 237 (453)
Q Consensus 167 ~~~~~~~--------~-~~~~~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (453)
.+...+. . .-....|||.|...+.+..+...+......+++.. ..++.+.+.+..++.....++.+.+.|
T Consensus 164 ~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rg-a~~~~~~~~~~~~~~ts~~kDl~~l~~ 242 (493)
T KOG1330|consen 164 FAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERG-ARDEVDGENKMVKPFTSVWKDLKVLAK 242 (493)
T ss_pred hhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccc-cccccccCCcCCCCccchHHHHHHHHc
Confidence 5543321 1 11124599999887665544433211111111100 011111111111222234456666777
Q ss_pred hhHHHHHHHHHHhhhcchhhecccHHHhhh----hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhcccc-CchhH
Q 012910 238 TLEFWILSFAMACGMGSGLATVNNISQIGG----SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEW-ARPLF 312 (453)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~-~r~~~ 312 (453)
++.+....+.+....+....+..|.|.+.. -.|.+..+...+..+...++.+|.+.+|.++||+.++..- ++...
T Consensus 243 ~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~ 322 (493)
T KOG1330|consen 243 IKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRA 322 (493)
T ss_pred cCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhH
Confidence 777776666666665555555556665543 2477777788888999999999999999999997664321 12211
Q ss_pred HHH----HHHHHHHHHHHHHh--cchhHHHHHHHHHHHhhhh-hhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhh
Q 012910 313 MVI----TLAAMSIGHLIIAS--GLPGALYAGSILVGVCYGS-QWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFS 385 (453)
Q Consensus 313 ~~~----~~~~~~i~~~~~~~--~~~~~~~~~~~l~g~~~g~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g 385 (453)
-.. +..+.+..+++... .......+.++++|..... ..+....+..|+.|+++|.+++++-.....+.+-.-+
T Consensus 323 ~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~ 402 (493)
T KOG1330|consen 323 SQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAAS 402 (493)
T ss_pred HHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCC
Confidence 111 11122222222221 1112233344444543322 3445556778899999999999998866655554456
Q ss_pred hhhhhhheeccCC
Q 012910 386 VRVVGYIYDREAS 398 (453)
Q Consensus 386 ~~~~g~l~~~~g~ 398 (453)
|.+.|.+.|+.-.
T Consensus 403 p~ivGilsd~l~g 415 (493)
T KOG1330|consen 403 PYIVGILSDKLRG 415 (493)
T ss_pred cceehhHHHHhhC
Confidence 6699999987643
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-24 Score=205.53 Aligned_cols=356 Identities=12% Similarity=-0.018 Sum_probs=233.8
Q ss_pred ccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHH
Q 012910 32 FSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYF 110 (453)
Q Consensus 32 ~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~ 110 (453)
++.+.+.+++++|+|.+|+|++.+...++... ++++|.++||+|+ +|+++.++.++.+++..
T Consensus 22 ~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~-----------------~r~~~~~~~~~~~~~~~ 84 (418)
T TIGR00889 22 LVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLS-----------------AQKVYAVCHFAGALLLF 84 (418)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHH
Confidence 45666778899999999999887777777765 6999999999961 57788888887777777
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhh--------cC-CCccchhheecccCCCCcccc--cc-
Q 012910 111 LMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRN--------FP-TYSGTAVGIMKGSDSDRTSET--SF- 178 (453)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~--------~p-~~rg~~~g~~~~~~~~~~~~~--~~- 178 (453)
+..+. ++++.+++.|++.|++.+...+...+....+ .. ..|.+..|.. ++.++.... ..
T Consensus 85 ~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~l--G~~ig~~l~g~l~~ 155 (418)
T TIGR00889 85 FAAQV-------TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGTI--GFIAAMWAVSLLDI 155 (418)
T ss_pred HHHHh-------cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehhH--HHHHHHHHHHHhcc
Confidence 64433 5888889999999998776666555443211 11 2344455432 221111110 01
Q ss_pred -cccCcccchhhhhhhhhcc-cccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchh
Q 012910 179 -CEEDELTDDPHEMHAEKMH-VRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGL 256 (453)
Q Consensus 179 -~~w~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (453)
..|.. |........+... ....++.+ +. +++++.+ .+ +....+.++.+|+|+++.+.+..++......
T Consensus 156 ~~~~~~-f~~~~~~~~~~~~~~~~~~e~~--~~-~~~~~~~-----~~-~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 225 (418)
T TIGR00889 156 ELSNIQ-LYITAGSSALLGVFALTLPDIP--VA-KSTAKMS-----IK-VMLGLDAFILFKNKRMAIFFFFSMLLGAPLQ 225 (418)
T ss_pred cchhHH-HHHHHHHHHHHHHHHhcCCCCC--CC-ccccccC-----HH-HHhhhhHHHHhcCCCeeeHHHHHHHHHhHHH
Confidence 12322 2222222111111 11122211 00 0000000 00 0111234578899998887777777655444
Q ss_pred hecccHHHhhhhcCCCh--------hhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH
Q 012910 257 ATVNNISQIGGSLGYSS--------FETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA 328 (453)
Q Consensus 257 ~~~~~~~~~~~~~g~s~--------~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~ 328 (453)
....+.+.+.++.|.++ ...+...++..+..+++.+..|+++||+ ++++++..+.++..++..++.
T Consensus 226 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~------g~r~~l~~~~~~~~v~~~l~~ 299 (418)
T TIGR00889 226 ITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF------GIKKVMLLSLVAWALRFGFFA 299 (418)
T ss_pred HHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh------CcHHHHHHHHHHHHHHHHHHH
Confidence 45566677777776554 5568899999999999999999999999 777788888887777765554
Q ss_pred h-c-ch---hHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhh-hhhhhhhhhhhhhhhhhheeccCCCCCC
Q 012910 329 S-G-LP---GALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTIT-IANPVGSYIFSVRVVGYIYDREASGEGN 402 (453)
Q Consensus 329 ~-~-~~---~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~i~g~~~~g~l~~~~g~~~~~ 402 (453)
. . +. ..+++..++.|++.+...+....++.|.+|+++++++.|+.+ ....+|.. +||++.|.+.|+.++.
T Consensus 300 ~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~-iGp~l~G~l~~~~g~~--- 375 (418)
T TIGR00889 300 YGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSL-LGYILSGVMVEKMFAY--- 375 (418)
T ss_pred HcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhccc---
Confidence 3 2 11 234456677888888888888889999999999999999997 56788885 7999999999986520
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012910 403 KCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTK 436 (453)
Q Consensus 403 ~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~ 436 (453)
+..+|+..|.+.+++.++++++..++.++.+
T Consensus 376 ---~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 376 ---GTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred ---cCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 0012899999988888887777666665443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-24 Score=203.92 Aligned_cols=344 Identities=13% Similarity=-0.015 Sum_probs=219.4
Q ss_pred ccchhHHhhcCCCccchhHHHHHHHHhhh-hcchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHHH
Q 012910 34 IYSPALKTTQHYDQTTLDTVSVFKDIGAN-TGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLM 112 (453)
Q Consensus 34 ~~~~~~~~~~~~s~~~~~~i~~~~~~~~~-~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~ 112 (453)
...+.+.+|++.+..+.+++.+.+.+.+. +++++|+++||+| ||++++++.++.+++.+++
T Consensus 24 ~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~g------------------rr~vl~~~~~~~~~~~~~~ 85 (393)
T PRK11195 24 FAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFP------------------KGRVMFIANGIKLLGCLLM 85 (393)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccC------------------CchhhHHHHHHHHHHHHHH
Confidence 33455678999999999988777777776 5699999999999 9999999999998888875
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCc--cccc-----ccccCcc
Q 012910 113 WASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRT--SETS-----FCEEDEL 184 (453)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~--~~~~-----~~~w~~~ 184 (453)
++. +++ ++.|+++|++.+...|...+++.|++| ++|++++|+......++. .|.. ...|+..
T Consensus 86 ~~~-------~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~ 155 (393)
T PRK11195 86 LFG-------IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAA 155 (393)
T ss_pred HHH-------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 232 678999999999999999999999997 899999999876554321 1111 1223333
Q ss_pred cchhhhhhhh-hcccccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhecccHH
Q 012910 185 TDDPHEMHAE-KMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNIS 263 (453)
Q Consensus 185 ~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (453)
+......... .......++.+.+++ +.++ +.. +..++.....+.++++|.+........+...........++
T Consensus 156 ~~i~~~~~~~~~~~~~~l~~~~~~~~--~~~~-~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (393)
T PRK11195 156 LAVCALIYLLAALFNLFIPRLGARRP--GQSW-NPI---ALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVL 229 (393)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccccc--ccCC-CHH---HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222111111 111111121110000 0000 000 00000011235667788766555444443344444444556
Q ss_pred Hhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhHHHHHHHH
Q 012910 264 QIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSIL 341 (453)
Q Consensus 264 ~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l 341 (453)
.+.++ +|.++.+.+...+..+++..++.++.+++.||. +++..+..+..+ .+....+. .++.+...+..++
T Consensus 230 ~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~------~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~ 302 (393)
T PRK11195 230 AWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE------TVLRVLPAGILM-GLVVLLMALQHSLLPAYPLLIL 302 (393)
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC------cccchHHHHHHH-HHHHHHHHHHhHHHHHHHHHHH
Confidence 66654 699999999999999999999999999999987 444444444433 33333333 3333444456667
Q ss_pred HHHhhhhhhhhhHHHHhHhhcccc-ccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHH
Q 012910 342 VGVCYGSQWSLMPTIASEIFGVLQ-MGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSA 420 (453)
Q Consensus 342 ~g~~~g~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~ 420 (453)
.|++.+...+...+.+.+..|++. +|++.++.++...++.. ++..+.+.+ +..| -+..+++.+..
T Consensus 303 ~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~-~~~~~~~~~-~~~~------------~~~~~~~~~~~ 368 (393)
T PRK11195 303 IGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAML-LMLGLYSLL-VKLG------------VPVVAVIVGFG 368 (393)
T ss_pred HHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHH-HHHHHHHHH-HHcC------------CCHHHHHHHHH
Confidence 888888877777787777655444 68999999999999985 577677744 5556 46677776665
Q ss_pred HHHHHHHHHHHh
Q 012910 421 TLCGSLAAFGLF 432 (453)
Q Consensus 421 ~~~~~i~~~~~~ 432 (453)
.+++..+.+.++
T Consensus 369 ~~~~~~~~~~~~ 380 (393)
T PRK11195 369 LLVALAMALLWR 380 (393)
T ss_pred HHHHHHHHHHHH
Confidence 555554444443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-23 Score=196.16 Aligned_cols=359 Identities=10% Similarity=-0.054 Sum_probs=212.0
Q ss_pred ccccHHHHHHHHHHHHhhcCcccccccchhHHhhcCCCccchhHH-HHHHHHhhhhcchhhhhhhccCCCCCCCCcchhh
Q 012910 9 LNTRWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTV-SVFKDIGANTGTLSGVLYTYSTSDHSSHHPRQQR 87 (453)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~~~~~~i-~~~~~~~~~~~~~~g~l~dr~g~~~~~~~p~~g~ 87 (453)
+.+.|..++..++..+..+. ..+...+.+++|+|+|.+++|++ ++....+.+.+++.+.+.||+|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~--~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g------------ 79 (393)
T PRK15011 14 DLTSTAFLIVAFLTGIAGAL--QTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRG------------ 79 (393)
T ss_pred cchhHHHHHHHHHHHHHHHH--HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------------
Confidence 34445555554444433222 23444456789999999999976 4556667777755444499999
Q ss_pred hhhccCchHHH-HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCc--cchhh
Q 012910 88 LTRLLGPWVVL-LVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYS--GTAVG 163 (453)
Q Consensus 88 ~~~~~g~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~r--g~~~g 163 (453)
+|+.+ ..+.++.+++..+.+++ ++++.+++.+.+.|...+...+....++.++.| ++| +...+
T Consensus 80 ------~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (393)
T PRK15011 80 ------DRKSLIVFCCLLGVLACTLFAWN-------RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSS 146 (393)
T ss_pred ------chhHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHH
Confidence 77764 45555555666654433 577777655555444445567777777777665 333 23334
Q ss_pred eecccCCCCc--------ccccccccCcccchhhhhhhhhcc--cccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHH
Q 012910 164 IMKGSDSDRT--------SETSFCEEDELTDDPHEMHAEKMH--VRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLL 233 (453)
Q Consensus 164 ~~~~~~~~~~--------~~~~~~~w~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (453)
+..++.+++. ......+||..|........+... ....|+..++++. .++ +. + . .+
T Consensus 147 ~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~--~---~----~~ 212 (393)
T PRK15011 147 FLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPL-ATG----TL--E---A----PR 212 (393)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCcc-ccc----cc--c---c----cc
Confidence 4443333311 111236999888776443322211 1112221111100 000 00 0 0 00
Q ss_pred HHhhhhHHHHHHHHHHhhhcchhhecccHHHhhh-hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhH
Q 012910 234 QAICTLEFWILSFAMACGMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLF 312 (453)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~ 312 (453)
+ +.+..+.......+.......+..+.|.+++ ++|+++.+++...+...+..++++++.|+++||+ +|++.
T Consensus 213 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~------g~~~~ 284 (393)
T PRK15011 213 R--NRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL------GKRFL 284 (393)
T ss_pred c--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------ChHHH
Confidence 0 0111222222223333333344556888875 5799999999988888888899999999999999 44445
Q ss_pred HHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhh
Q 012910 313 MVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGY 391 (453)
Q Consensus 313 ~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~ 391 (453)
+..+.....+...... .++.+...+..++.+++.+...+..+.+..|.+| ++++++.++.+....+|.. ++|.+.|.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~-~g~~l~G~ 362 (393)
T PRK15011 285 MRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWI-IAGSLAGI 362 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHH-HHHHHHHH
Confidence 5544444333333322 3344444444455556666666666677888888 5699999999888888885 79999999
Q ss_pred heeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHH
Q 012910 392 IYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFG 430 (453)
Q Consensus 392 l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~ 430 (453)
+.|..+ |+..|.+..++.+++++..+.
T Consensus 363 i~~~~g------------~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 363 VAEIWN------------YHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHhh------------hHHHHHHHHHHHHHHHHHHHh
Confidence 999876 788888877777776655443
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.9e-23 Score=194.81 Aligned_cols=334 Identities=10% Similarity=-0.059 Sum_probs=225.5
Q ss_pred ccccchhHHhhcCCCccchhHHHHHHHHhhh-hcchhhhhhhccCCCCCCCCcchhhhhhccCc----hHHHHHHHHHHH
Q 012910 32 FSIYSPALKTTQHYDQTTLDTVSVFKDIGAN-TGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGP----WVVLLVGAIQCF 106 (453)
Q Consensus 32 ~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~-~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~----r~~~~~~~~~~~ 106 (453)
+.++.|.+.+|+|.|..++|++.+.+.+... .++++|++.||+| | ++.+.++..+..
T Consensus 23 ~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g------------------~~~~~~~~~~~~~~~~~ 84 (382)
T PRK11128 23 FLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPS------------------QLIPALRLLALLTLLFA 84 (382)
T ss_pred HhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhc------------------chHHHHHHHHHHHHHHH
Confidence 4455577889999999999977666766665 5699999999999 5 233332222221
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcCCCccchhheecccCCCCc--c------cccc
Q 012910 107 AGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKGSDSDRT--S------ETSF 178 (453)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p~~rg~~~g~~~~~~~~~~--~------~~~~ 178 (453)
+ .. .... ++++.+++.|++.|++.+...+...+++.++ +++|+++.+.......++. . ....
T Consensus 85 ~--~~-----~~~~--~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~-~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~ 154 (382)
T PRK11128 85 V--AF-----WFGA--HSFWLLFVAIGLFNLFFSPLVPLTDALANTW-QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW 154 (382)
T ss_pred H--HH-----HHhc--ccHHHHHHHHHHHHHHHcccccHHHHHHHHH-HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11 1122 5899999999999999988888777666665 5667777777654443321 1 1122
Q ss_pred cccCcccchhhhhhhhhcc-cccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhh
Q 012910 179 CEEDELTDDPHEMHAEKMH-VRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLA 257 (453)
Q Consensus 179 ~~w~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (453)
.+||..|............ ....++.. + +++++ ++.++...++++++|+|++|...+..++.......
T Consensus 155 ~g~~~~f~~~~~~~~~~~~~~~~~~~~~-~--~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~ 223 (382)
T PRK11128 155 FGEQAILWILTAGVASMLLGQLLRPTIM-P--QGESR--------QQESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAA 223 (382)
T ss_pred cChhHHHHHHHHHHHHHHHHHHccCCCC-C--ccccc--------cccccccchHHHHHcChhHHHHHHHHHHHHHHhHh
Confidence 6899888655432222111 11111111 1 00000 00001234678999999999887777766555555
Q ss_pred ecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhHHH
Q 012910 258 TVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALY 336 (453)
Q Consensus 258 ~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~ 336 (453)
...+.+.+.++.|.++.+.+...+...++..+..++.|++.||+ ++++.+..+.+...++.+++. .++.+.++
T Consensus 224 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 297 (382)
T PRK11128 224 YYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW------SARDLLLLSAICGVVRWGLMGSTTALPWLI 297 (382)
T ss_pred HHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 66677888888999999999999999999999999999999999 666667777777777766655 45556666
Q ss_pred HHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhh-hhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHH
Q 012910 337 AGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTIT-IANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFF 415 (453)
Q Consensus 337 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~ 415 (453)
+..++.|++.+...+....+..+. +++++++..+..+ ....+|.. +||.+.|.+.|..| + ..++
T Consensus 298 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~-ig~~i~G~l~~~~g------------~-~~~~ 362 (382)
T PRK11128 298 VIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIA-IMTVLSGFLYQHLG------------A-GVFW 362 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcc------------H-HHHH
Confidence 777888998888888877877776 4566788888876 44556654 68999999999876 3 4566
Q ss_pred HHHHHHHHHH
Q 012910 416 IMGSATLCGS 425 (453)
Q Consensus 416 ~~~~~~~~~~ 425 (453)
..+++.++++
T Consensus 363 ~~~~~~~~~~ 372 (382)
T PRK11128 363 VMALVALPAL 372 (382)
T ss_pred HHHHHHHHHH
Confidence 6665555443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-23 Score=196.31 Aligned_cols=313 Identities=9% Similarity=-0.071 Sum_probs=210.1
Q ss_pred ccccchhHHhhcCCCccchhHHHHHHHHhhhhcchhhhhhhccCCCCCCCCcchhhhhhccCchHH-HHHHHHHHHHHHH
Q 012910 32 FSIYSPALKTTQHYDQTTLDTVSVFKDIGANTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVV-LLVGAIQCFAGYF 110 (453)
Q Consensus 32 ~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~-~~~~~~~~~~~~~ 110 (453)
.+...|.+.+|+|+|.+|+++......... ..+++|++.||++ .+|+||||. ++.+.++.++...
T Consensus 7 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~-~~~~~g~~~Dr~~-------------~~~~Grr~~~l~~~~~~~~~~~~ 72 (356)
T TIGR00901 7 VGNTLPYWLRSKNVSLKTIGFFSLVGLPYS-LKFLWSPLVDTVY-------------LPFFGRRRSWLVLTQVLLLSLLL 72 (356)
T ss_pred HHhHHHHHHHHcCCCHHHHHHHHHHHHHHH-HHHHHHHHHhccc-------------CCCCCccHHHHHHHHHHHHHHHH
Confidence 455678899999999999997765544443 4889999999995 234557776 5666777777666
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCcc--------cccccc-
Q 012910 111 LMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRTS--------ETSFCE- 180 (453)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~~--------~~~~~~- 180 (453)
.+++. .+..+.+.+....++.+++.+...++..+++.|++| ++|+++.++...+..++.. .....+
T Consensus 73 ~l~~~----~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~ 148 (356)
T TIGR00901 73 ILSFL----VPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFA 148 (356)
T ss_pred HHHcC----CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 64322 111356667778888889888888999999999996 8999999998766544211 111234
Q ss_pred -------cCcccchhhhhhhhhcccc--cCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhH---HHHHHHHH
Q 012910 181 -------EDELTDDPHEMHAEKMHVR--QDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLE---FWILSFAM 248 (453)
Q Consensus 181 -------w~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 248 (453)
||..|.............. ..++.... ++++ + ++..+....++++++++. ++.+.+..
T Consensus 149 ~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~---~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (356)
T TIGR00901 149 NTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQED---ASVP--K-----PLTQAVLKPIREFFQRKNMIQALLLLLLI 218 (356)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcc---cccc--h-----hHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 8888866644332222111 11211100 0000 0 000011224566777765 66666666
Q ss_pred HhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHH-HHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHH
Q 012910 249 ACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWS-IWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLII 327 (453)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~-i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~ 327 (453)
++..........++|.++++.|+++++.+......+ +...++.+++|++.||+ ++++.+..+.++..+...++
T Consensus 219 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~------g~~~~l~~~~~~~~~~~~~~ 292 (356)
T TIGR00901 219 VLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL------NILYALLLFGIVQALTNAGF 292 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHHHHH
Confidence 666666666777889998889999999998888776 57889999999999999 55555566555555554433
Q ss_pred H-h-----------cchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhh
Q 012910 328 A-S-----------GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANP 378 (453)
Q Consensus 328 ~-~-----------~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 378 (453)
. . ++.+.+....++.+++.+...+...++..|.+|++++|+.+|+.+...+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 293 VWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 2 1 1223445556677889999999999999999999999999999876543
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=197.58 Aligned_cols=331 Identities=12% Similarity=-0.012 Sum_probs=216.6
Q ss_pred cchhHHhhcCCCccchhHHHHHHHHhhh-hcchhhhhhhccCCCCCCCCcchhhhhhccCc-hHHHHHHHHHHHHHHHHH
Q 012910 35 YSPALKTTQHYDQTTLDTVSVFKDIGAN-TGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGP-WVVLLVGAIQCFAGYFLM 112 (453)
Q Consensus 35 ~~~~~~~~~~~s~~~~~~i~~~~~~~~~-~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~-r~~~~~~~~~~~~~~~~~ 112 (453)
+.+.+.+++|+|..++|++.+...+... ..|+.|+++||.++ |+|| |+.++++....+++.+++
T Consensus 22 l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~--------------r~Grrr~~i~~~~~~~~i~~~~~ 87 (437)
T TIGR00792 22 LLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRT--------------RWGKFRPWLLIGAIPFSIVLVLL 87 (437)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCC--------------CCCCcchhHHHhHHHHHHHHHHH
Confidence 4466788999999999977666666655 56999999999884 3445 456777778888777775
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhc-C-CCccchhheecccCCCC-------cccc-------
Q 012910 113 WASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNF-P-TYSGTAVGIMKGSDSDR-------TSET------- 176 (453)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~-p-~~rg~~~g~~~~~~~~~-------~~~~------- 176 (453)
.+. ...........+++.+++.+++.+...++..++..+.. + +||++..++...+..++ ..+.
T Consensus 88 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~ 166 (437)
T TIGR00792 88 FTT-PDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGG 166 (437)
T ss_pred HhC-CCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 543 11111012456667888899998887777777777776 3 78998887764332221 0111
Q ss_pred -cccccCcccchhhhhhhhhccc--ccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhc
Q 012910 177 -SFCEEDELTDDPHEMHAEKMHV--RQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMG 253 (453)
Q Consensus 177 -~~~~w~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (453)
...+|++.+.+...+..+...+ ...+++. ++. ++++ +++......+++++++|.++...+..++...
T Consensus 167 ~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~--~~~-~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (437)
T TIGR00792 167 DDKFGWFMFALVLALIGVVSLIICFFGTKERY--SEI-PKNI-------EKKLSLKQIFKALFKNDQLLILCLAYLFYNL 236 (437)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHcCCEecC--CCC-Cccc-------ccCCCHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 1246776665554433322221 1122111 000 0000 0000112345678899999888877777666
Q ss_pred chhhecccHHHhhhhc-CCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHh--c
Q 012910 254 SGLATVNNISQIGGSL-GYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS--G 330 (453)
Q Consensus 254 ~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~--~ 330 (453)
.........+.+.+.. + ++.+.+....+..++.+++.++.++++||+ ++++++..+..+.+++...+.. +
T Consensus 237 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~------g~~~~~~~~~~~~~~~~~~~~~~~~ 309 (437)
T TIGR00792 237 AFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF------GRKILFAGGILLMVLGYLIFFFAGS 309 (437)
T ss_pred HHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CcHHHHHHHHHHHHHHHHHHHHcch
Confidence 5555444445555433 4 456677777888999999999999999999 5666677777666666655442 2
Q ss_pred chhHHHHHHHHHHHhhhhhhhhhHHHHhHhhc-------cccccchhhhhhhhhhhhhhhhhhhhhhhheeccCC
Q 012910 331 LPGALYAGSILVGVCYGSQWSLMPTIASEIFG-------VLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREAS 398 (453)
Q Consensus 331 ~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~ 398 (453)
+.+...+..++.|++.+...+...++++|..+ ++++|...|+.++...+|.. +++.+.|.+.|..|-
T Consensus 310 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~-lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 310 NLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQA-LAGFLVGLILGIIGY 383 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCC
Confidence 33444556677788888888888888888764 45678899999999999985 688899999887663
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-22 Score=190.76 Aligned_cols=349 Identities=11% Similarity=-0.036 Sum_probs=218.0
Q ss_pred hhHHhhcCCCccchhHHHHHHHHhhh-hcchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHHHHHH
Q 012910 37 PALKTTQHYDQTTLDTVSVFKDIGAN-TGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWAS 115 (453)
Q Consensus 37 ~~~~~~~~~s~~~~~~i~~~~~~~~~-~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~ 115 (453)
+.+++++|.|..+.+++.+...+... .+++.|+++||+| ||+.++.+....+++.......
T Consensus 27 ~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~g------------------rr~~~~~~~~~~~~~~~~~~~~ 88 (396)
T TIGR00882 27 IWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLG------------------LKKHLLWIISGLLVLFAPFFIY 88 (396)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------------cHHHHHHHHHHHHHHHHHHHHH
Confidence 44677899999999977677766666 5699999999999 9999988776666544432111
Q ss_pred -HhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcCCCccchhheecccCCCC----cc---cccccccCcccch
Q 012910 116 -VVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKGSDSDR----TS---ETSFCEEDELTDD 187 (453)
Q Consensus 116 -~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p~~rg~~~g~~~~~~~~~----~~---~~~~~~w~~~~~~ 187 (453)
.........+..+++.+++.|++.+...+....+..+.- ++++...|......+++ .. .....+|+..|..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~ 167 (396)
T TIGR00882 89 VFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS-RNSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWL 167 (396)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh-hhcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHH
Confidence 000000012233456788888888877776666555532 33444445443333331 11 1123588888766
Q ss_pred hhhhhhhhcc--cccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHh
Q 012910 188 PHEMHAEKMH--VRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQI 265 (453)
Q Consensus 188 ~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (453)
......+... ....++. +++++ +++..+ ++++..+..+.++.+|||+++...+..++..........+.+.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y 241 (396)
T TIGR00882 168 GSGFALILMLLLMFAKPKA--PSSAT-VANALG---ANASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANF 241 (396)
T ss_pred HHHHHHHHHHHHHHhCCCC--chhhh-hhcccc---cccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5433322221 1111111 11000 000000 01111223456788999998877666555444444444456666
Q ss_pred hhhc----CCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhHHHHHHH
Q 012910 266 GGSL----GYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSI 340 (453)
Q Consensus 266 ~~~~----g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~ 340 (453)
+++. +.+....+...+...+...++.+..|++.||+ ++++.+..+..+.++...+.. .++.+.+++...
T Consensus 242 ~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~------g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 315 (396)
T TIGR00882 242 FTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI------GAKNALLIAGTIMSVRIIGSSFATTALEVVILKM 315 (396)
T ss_pred HHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh------ccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 6543 55666778888889999999999999999999 566666777776666666644 455555666666
Q ss_pred HHHHhhhhhhhhhHHHHhHhhccccccchhhh-hhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHH
Q 012910 341 LVGVCYGSQWSLMPTIASEIFGVLQMGTIFNT-ITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGS 419 (453)
Q Consensus 341 l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~ 419 (453)
+.|++..........+..+..+++.+++..+. .+....+|+. +++.+.|++.|..| |+..|.+.++
T Consensus 316 l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~-~~~~l~G~l~~~~G------------~~~~f~~~~~ 382 (396)
T TIGR00882 316 LHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMI-FLSTLAGNMYDSIG------------FQGAYLVLGC 382 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHH-HHHHhHHHHHHhcc------------cHHHHHHHHH
Confidence 77776655555555566777777777777666 5677888885 78999999999887 8999999988
Q ss_pred HHHHHHHHHH
Q 012910 420 ATLCGSLAAF 429 (453)
Q Consensus 420 ~~~~~~i~~~ 429 (453)
+.++..++..
T Consensus 383 ~~~i~~~~~~ 392 (396)
T TIGR00882 383 IVLLFTLISV 392 (396)
T ss_pred HHHHHHHHHH
Confidence 8877776544
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.9e-22 Score=186.09 Aligned_cols=366 Identities=15% Similarity=0.032 Sum_probs=243.8
Q ss_pred HHhhcC--CCccchh----HHHHHHHHhhhhc-chhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHH
Q 012910 39 LKTTQH--YDQTTLD----TVSVFKDIGANTG-TLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFL 111 (453)
Q Consensus 39 ~~~~~~--~s~~~~~----~i~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~ 111 (453)
+.+++| .|+++.. .+.+.+.+|.+++ ...|+++||+| ||..+.++.++..++.++
T Consensus 45 ~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~G------------------RK~~l~~~~~l~~~~~~~ 106 (485)
T KOG0569|consen 45 LIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFG------------------RKNALLLSNLLAVLAALL 106 (485)
T ss_pred HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------------------chHHHHHHHHHHHHHHHH
Confidence 345566 4555554 2466677787765 89999999999 999999999998888888
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCcc----------cccccc
Q 012910 112 MWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRTS----------ETSFCE 180 (453)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~~----------~~~~~~ 180 (453)
+.++ ... +++.+++++|++.|+..|........++.|..| +.||....+...+..++.. ......
T Consensus 107 ~~~s--~~~--~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~ 182 (485)
T KOG0569|consen 107 MGLS--KSA--PSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDL 182 (485)
T ss_pred HHHH--HHh--hhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcc
Confidence 7665 223 588999999999999999999999999999999 7899888777655544221 111244
Q ss_pred cCcccchhhhhhhhhc-c---cccCCCCccc-CCCC-------------CCCCCCC------CcCCcCCCCCCccHHHHh
Q 012910 181 EDELTDDPHEMHAEKM-H---VRQDPVGYHR-LPSE-------------PDVGTDT------NDATTSLWGGDLDLLQAI 236 (453)
Q Consensus 181 w~~~~~~~~~~~~~~~-~---l~~~~~~~~~-~~~~-------------~~~~~~~------~~~~~~~~~~~~~~~~~~ 236 (453)
|.+.+........+.. . +++.|+.... +.++ ++++.+. .++.+...+++.++++++
T Consensus 183 W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~ 262 (485)
T KOG0569|consen 183 WPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLL 262 (485)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHh
Confidence 6666655433322221 1 2333321111 1110 0000000 000011112556788999
Q ss_pred hhhHHHH----HHHHHHhhhcc-hhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchh
Q 012910 237 CTLEFWI----LSFAMACGMGS-GLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPL 311 (453)
Q Consensus 237 ~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~ 311 (453)
+++.... .+...+..... ......+...++++.|++..++.+.....++.+.+.++++.++.||. +||+
T Consensus 263 ~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~------gRRp 336 (485)
T KOG0569|consen 263 KNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL------GRRP 336 (485)
T ss_pred cCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCcH
Confidence 8865443 22233333333 33445556677788899999999999999999999999999999999 7888
Q ss_pred HHHHHHHHHHHHHHHHHh-----cc--hhH---HHHHHHHHHHhhhhh-hhhhHHHHhHhhccccccchhhhhhhhhhhh
Q 012910 312 FMVITLAAMSIGHLIIAS-----GL--PGA---LYAGSILVGVCYGSQ-WSLMPTIASEIFGVLQMGTIFNTITIANPVG 380 (453)
Q Consensus 312 ~~~~~~~~~~i~~~~~~~-----~~--~~~---~~~~~~l~g~~~g~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 380 (453)
+++.+..++.+..+++.. .. .+. .+++.+++.+.++.. .|+.+-+.+|++|++.|+.+.++....+.+.
T Consensus 337 Lll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~ 416 (485)
T KOG0569|consen 337 LLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLS 416 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHH
Confidence 888888887777666441 11 121 123334444444443 4566678999999999999999999999988
Q ss_pred hhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 012910 381 SYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKRFYNEVILRR 446 (453)
Q Consensus 381 ~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 446 (453)
.++.+ ...-.+.+..| ...|++..+.+.+..+..+...+++|.+...+..+.
T Consensus 417 ~fiv~-~~fp~l~~~~g-------------~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~ 468 (485)
T KOG0569|consen 417 NFIVG-FAFPPLQNVIG-------------PYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEE 468 (485)
T ss_pred HHHHH-HHHHHHHHHhc-------------chhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHH
Confidence 87543 35666667666 356777777777777777777788887665554443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.3e-22 Score=191.74 Aligned_cols=345 Identities=12% Similarity=-0.028 Sum_probs=214.9
Q ss_pred cccchhHHhhcCCCccchhHHHHHHHHhhhhcchhhhhhhccCCCCCCCCcchhhhhhccCch-HHHHHHHHHHHHHHHH
Q 012910 33 SIYSPALKTTQHYDQTTLDTVSVFKDIGANTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPW-VVLLVGAIQCFAGYFL 111 (453)
Q Consensus 33 ~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r-~~~~~~~~~~~~~~~~ 111 (453)
....|.+-+|.|+|.+|+|++...... .++.+++|+++||++ .|++||| +++.++.++.+++..+
T Consensus 19 ~~~~~~~l~~~g~~~~~ig~~~~~~~~-~~~~~l~g~~~Dr~~-------------~~~~g~rr~~l~~~~~~~~l~~~~ 84 (402)
T PRK11902 19 SGTLQAWMTVEGLDIQTIGFFSLVGQA-YIFKFLWAPLMDRYT-------------PPLLGRRRGWLLLTQVGLAASIAA 84 (402)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHccc-------------ccCCCcchhHHHHHHHHHHHHHHH
Confidence 345577777789999999987666665 467799999999993 1112254 5788888888777777
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCcc--------ccc-cccc
Q 012910 112 MWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRTS--------ETS-FCEE 181 (453)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~~--------~~~-~~~w 181 (453)
+++. . ..++++.+++..++.++..+...++..+++.|++| +||+++.++...+.+++.. ... ..+|
T Consensus 85 l~~~--~--~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw 160 (402)
T PRK11902 85 MAFC--P--PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGW 160 (402)
T ss_pred HHhc--C--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCH
Confidence 4432 1 11357778888888888888888999999999997 6799999998776544211 111 1489
Q ss_pred Ccccchhhhhhhhhccc-ccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhecc
Q 012910 182 DELTDDPHEMHAEKMHV-RQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVN 260 (453)
Q Consensus 182 ~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (453)
|..|............. ...++.+.++ +++ + +..++...++++++|+|.++..++..++..........
T Consensus 161 ~~~f~i~a~~~l~~~l~~~~~~e~~~~~---~~~--~-----~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~ 230 (402)
T PRK11902 161 GNTYLLMAGLMLAGALTTLWAPEPEVPA---RPP--R-----SLGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGS 230 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccc---ccc--c-----hhHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHH
Confidence 99887764433222111 1111111100 000 0 00001123567789999988777665555443322222
Q ss_pred cHHH-hhhhcCCChhhhhHHHHHHHH-HHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHH---Hh--cchh
Q 012910 261 NISQ-IGGSLGYSSFETSSLISLWSI-WNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLII---AS--GLPG 333 (453)
Q Consensus 261 ~~~~-~~~~~g~s~~~~~~~~~~~~i-~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~---~~--~~~~ 333 (453)
+.++ +.++.|+++++.+......++ +..++.+++|++.||+ ++++.+..+..+..+..+.+ .. ++.+
T Consensus 231 ~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~------g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~ 304 (402)
T PRK11902 231 LSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL------GLYRSLMLFGVLQAVSNLGYWVLAVTPKHLW 304 (402)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence 3333 445689999999998876654 6889999999999999 44444544444444332222 22 2333
Q ss_pred HHHHHHH----HHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccc
Q 012910 334 ALYAGSI----LVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHC 409 (453)
Q Consensus 334 ~~~~~~~----l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~ 409 (453)
.+..... ..|++.+...+....++.+.+| ++..+..+....++..+.+ ++.|.+.|..|
T Consensus 305 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~-~~~G~l~~~~G------------ 367 (402)
T PRK11902 305 TMALAIGIENLCGGMGTAAFVALLMALCNRSFS----ATQYALLSALASVGRVYVG-PTSGYLVEAYG------------ 367 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhC------------
Confidence 3333333 3344455555555555555555 3445555555566775434 47999999988
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 012910 410 FMLSFFIMGSATLCGSLAA 428 (453)
Q Consensus 410 ~~~~f~~~~~~~~~~~i~~ 428 (453)
|+..|.+.+.+.++++++.
T Consensus 368 ~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 368 WPGFYLMTVVIALPGLALL 386 (402)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 7888988888877776544
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-22 Score=217.46 Aligned_cols=338 Identities=11% Similarity=-0.007 Sum_probs=219.9
Q ss_pred hHHhhcCCCccc-hhHHHHHHHHhhh-hcchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHH---HHHHHHHHH
Q 012910 38 ALKTTQHYDQTT-LDTVSVFKDIGAN-TGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAI---QCFAGYFLM 112 (453)
Q Consensus 38 ~~~~~~~~s~~~-~~~i~~~~~~~~~-~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~---~~~~~~~~~ 112 (453)
.+..+.+.+... .++..+.+.+..+ +++++|+++||+| ||+++..... +..+..+..
T Consensus 41 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~------------------rk~~~~~~~~~~~~~~~~~~~~ 102 (1140)
T PRK06814 41 GLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYD------------------KAKLAKILKFAEIGIAALAIYG 102 (1140)
T ss_pred HhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhcc------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444 4466666666655 6799999999999 8887533222 222211111
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCcc--------cccccccCc
Q 012910 113 WASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRTS--------ETSFCEEDE 183 (453)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~~--------~~~~~~w~~ 183 (453)
... ++++.+++.|+++|++.+...++..+++.+++| ++|++++|+..++.+++.. .....+|++
T Consensus 103 -----~~~--~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~ 175 (1140)
T PRK06814 103 -----FHL--NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVI 175 (1140)
T ss_pred -----HHH--hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 111 489999999999999999999999999999996 8899999999877765321 112367887
Q ss_pred ccchhhhhhhhhccc-ccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhecccH
Q 012910 184 LTDDPHEMHAEKMHV-RQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNI 262 (453)
Q Consensus 184 ~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (453)
.|............+ ...++...+ ++....+. ....+....++.+.+++.+|...+..++.......+..++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1140)
T PRK06814 176 LVALLMGIAVLGWLASLFIPKTGNA---APDLKIDR----NIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQL 248 (1140)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCCC---CCCCeecc----chHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 772222211111111 111111100 00000000 0000111245677889999998888777777666677788
Q ss_pred HHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-h-----------
Q 012910 263 SQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-S----------- 329 (453)
Q Consensus 263 ~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~----------- 329 (453)
|.|+++ +|.++.+.+.+.+..+++.++|.++.|+++|+..+ +..+..+.++..+..+.+. .
T Consensus 249 p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (1140)
T PRK06814 249 PLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRIT------LLYVPIGALLMGLFGLDLAFASSSVPAEPAQL 322 (1140)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCcee------eeeehHHHHHHHHHHHHHHhcccccccccccc
Confidence 999876 69999999999999999999999999999987642 2222222222222222111 1
Q ss_pred ---------cchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCC
Q 012910 330 ---------GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGE 400 (453)
Q Consensus 330 ---------~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~ 400 (453)
.+.+.+.+..+++|++.+...+...+++.+.+|++++|+++|+.++...++.. +++++.|.+.+...+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~-ig~~~~g~l~~~~~~-- 399 (1140)
T PRK06814 323 KSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMV-AGTIILALLQALGFS-- 399 (1140)
T ss_pred cchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHH-HHHHHHHHHHHhccC--
Confidence 34445566777889998888888999999999999999999999999888885 688888888764433
Q ss_pred CCccccccchHHHHHHHHHHHHHHH
Q 012910 401 GNKCTGTHCFMLSFFIMGSATLCGS 425 (453)
Q Consensus 401 ~~~~~~~~~~~~~f~~~~~~~~~~~ 425 (453)
+...+++.+.+.++..
T Consensus 400 ---------~~~~~~~~~~~~~~~~ 415 (1140)
T PRK06814 400 ---------IPWIILFIALANLIVA 415 (1140)
T ss_pred ---------HHHHHHHHHHHHHHHH
Confidence 5666655554444433
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.2e-22 Score=215.13 Aligned_cols=327 Identities=9% Similarity=-0.044 Sum_probs=216.5
Q ss_pred cccchhHHhhcCCCccc--hhHHHHHHHHhhh-hcchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHH
Q 012910 33 SIYSPALKTTQHYDQTT--LDTVSVFKDIGAN-TGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGY 109 (453)
Q Consensus 33 ~~~~~~~~~~~~~s~~~--~~~i~~~~~~~~~-~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~ 109 (453)
..+.+.+..+++.+.+. .+++.+.+.++.+ +++++|+++||+| ||++++++.++..+..
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~g------------------rk~~l~~~~~~~~~~~ 91 (1146)
T PRK08633 30 ILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFS------------------KNRVIRIVKLFEVGLT 91 (1146)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhccccc------------------HHHHHHHHHHHHHHHH
Confidence 34445566667665443 4566677777666 4699999999999 9999998887766666
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCcc--c------ccc--
Q 012910 110 FLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRTS--E------TSF-- 178 (453)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~~--~------~~~-- 178 (453)
+++.+. ... ++++.+++.|+++|++.+...++..+++.+++| ++|++++|+..++..++.. + ...
T Consensus 92 ~~~~~~--~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~ 167 (1146)
T PRK08633 92 LLIVLA--YYL--GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVN 167 (1146)
T ss_pred HHHHHH--HHH--ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 554332 222 478999999999999999999999999999997 8999999998766544211 0 000
Q ss_pred -------cccCcccchhhhhhhhhc--ccccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHH
Q 012910 179 -------CEEDELTDDPHEMHAEKM--HVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMA 249 (453)
Q Consensus 179 -------~~w~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (453)
.+|.+.+........+.. .....++...... ..++ . ............++.+++++.++...+..+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (1146)
T PRK08633 168 GNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAP-EVFD---K-KKYLFPKLLWRNLKLLRSDRVLWLAIIGLS 242 (1146)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCc-cccc---c-cccccHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 112222222211111111 1111121111100 0000 0 000000011224556778888887777666
Q ss_pred hhhcchhhecccHHHhhh-hcCCChh-hhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHH
Q 012910 250 CGMGSGLATVNNISQIGG-SLGYSSF-ETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLII 327 (453)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~-~~g~s~~-~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~ 327 (453)
+..........++|.+++ .+|++.. +.+++.+...++.+++.++.|+++||+ +++.++.++.++.+++.+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~------~~~~~~~~~~~~~~~~~~~~ 316 (1146)
T PRK08633 243 YFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH------IELGLVPLGALGLALSLFLL 316 (1146)
T ss_pred HHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc------eEccchhHHHHHHHHHHHHH
Confidence 666655556667787776 4699988 899999999999999999999999998 44555555655555555555
Q ss_pred H-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhhe
Q 012910 328 A-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIY 393 (453)
Q Consensus 328 ~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~ 393 (453)
. ..+.+.+.+..++.|++.+...+...+++.+..|++.+|+++|+.++...++.. +++.+.+.+.
T Consensus 317 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~-~~~~~~~~l~ 382 (1146)
T PRK08633 317 PTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGML-LFLALTTLFS 382 (1146)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4 344455566778888888888888889999999999999999999988888874 4665555443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.8e-22 Score=175.90 Aligned_cols=334 Identities=13% Similarity=0.057 Sum_probs=234.7
Q ss_pred hhcCCCccchhHHHHHHHHhhh-hcchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcC
Q 012910 41 TTQHYDQTTLDTVSVFKDIGAN-TGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGL 119 (453)
Q Consensus 41 ~~~~~s~~~~~~i~~~~~~~~~-~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 119 (453)
++.+-+++++|++.....+..+ +.|+.|.+.||+| +|..+++|..+....++++++.
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iG------------------y~ipm~~Gl~vmf~sTilFafg---- 156 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIG------------------YKIPMVAGLFVMFLSTILFAFG---- 156 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHhc------------------cccHHHHHHHHHHHHHHHHHHc----
Confidence 4456678889976666665555 6799999999999 9999999999999999997766
Q ss_pred CCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC--CCccchhheecccCCCCcccccc--------cccCcccchhh
Q 012910 120 IPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP--TYSGTAVGIMKGSDSDRTSETSF--------CEEDELTDDPH 189 (453)
Q Consensus 120 ~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p--~~rg~~~g~~~~~~~~~~~~~~~--------~~w~~~~~~~~ 189 (453)
++|+.+++.|.+||+|.+...++..++++|.|| ++||+++|+..++.+++.....+ .|.+..|.+..
T Consensus 157 ---~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~ 233 (464)
T KOG3764|consen 157 ---NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLA 233 (464)
T ss_pred ---chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHH
Confidence 799999999999999999999999999999997 46899999998877765432222 57777887775
Q ss_pred hhhhhhccc---ccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhh
Q 012910 190 EMHAEKMHV---RQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIG 266 (453)
Q Consensus 190 ~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (453)
.+..+-..+ ..+|.+..+ + ...++.++++++++|..+................-..++.++
T Consensus 234 ~v~Lld~~L~l~vi~p~~~~~-----~-----------~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm 297 (464)
T KOG3764|consen 234 IVLLLDGALQLLVIEPTEMDP-----D-----------STEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWM 297 (464)
T ss_pred HHHHHHHHHHHheeCccccCc-----c-----------ccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHH
Confidence 554433222 112211110 0 011334678999999988877666666555555666677765
Q ss_pred h-hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHH
Q 012910 267 G-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSILVGV 344 (453)
Q Consensus 267 ~-~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~g~ 344 (453)
. ++..+.-+.++.+....+...++..+.|.+.||+++ .|-.....+.+.......... .++...+++.....++
T Consensus 298 ~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~----~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~ 373 (464)
T KOG3764|consen 298 LETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPH----LRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGF 373 (464)
T ss_pred HHhccCCCcceeeeecccccchhccCchHHHHHHhcCc----hhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHH
Confidence 4 456444488999999999999999999999999953 243333333333333333222 3333445555555555
Q ss_pred hhhhhhhhhHHHHhHhhccc------cccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHH
Q 012910 345 CYGSQWSLMPTIASEIFGVL------QMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMG 418 (453)
Q Consensus 345 ~~g~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~ 418 (453)
+.+...........++...+ ..|..+++...+..+|.. +||.++|.+.+..| |+|.-.+.+
T Consensus 374 ~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a-~GP~~gg~iv~~iG------------F~wl~~iig 440 (464)
T KOG3764|consen 374 GIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYA-IGPTFGGSLVEAIG------------FEWLMTIIG 440 (464)
T ss_pred HHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhh-ccccccchheeehh------------HHHHHHHHH
Confidence 55555544444444444322 567888898899999996 79999999999988 898888888
Q ss_pred HHHHHHHHHHHHHh
Q 012910 419 SATLCGSLAAFGLF 432 (453)
Q Consensus 419 ~~~~~~~i~~~~~~ 432 (453)
+..++-.-+...++
T Consensus 441 ~~n~iyapvl~ll~ 454 (464)
T KOG3764|consen 441 ILNLIYAPVLLLLR 454 (464)
T ss_pred HHHHHHHHHHHHHH
Confidence 87777665554443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.2e-21 Score=182.22 Aligned_cols=358 Identities=11% Similarity=-0.043 Sum_probs=218.0
Q ss_pred HHHHHHhhcCc-ccccccchhHHhhcCCCccchhHHHHHHHHhhhhcchhhhhhhccCCCCCCCCcchhhhhhccCchHH
Q 012910 19 SIWIQCTSGSL-YTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVV 97 (453)
Q Consensus 19 ~~~~~~~~g~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~ 97 (453)
.....+..|.. .....+.|.+.+|.|.|.+++|+++.. .+.....++++++.||+. .||+||||.
T Consensus 6 ~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~-~l~~~~~~l~~p~~~~~~-------------~~~~g~r~~ 71 (390)
T TIGR02718 6 LGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLV-GLPWVVKFLWAPLVDNWW-------------SWRLGRRRS 71 (390)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHHHHHHHHHHHhccc-------------cccCCcchh
Confidence 33444556664 334577788999999999999976322 222333445555555543 244457777
Q ss_pred HHHHHHHH-HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCC---
Q 012910 98 LLVGAIQC-FAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDR--- 172 (453)
Q Consensus 98 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~--- 172 (453)
.++...+. ++....++. ..... .....++..-++.++..+...+....+..|+.+ ++++...+....+..++
T Consensus 72 ~i~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~ 148 (390)
T TIGR02718 72 WVLPMQCLVSACLASLAL--VGPDV-AGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFG 148 (390)
T ss_pred HHHHHHHHHHHHHHHHHc--CCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHH
Confidence 65554332 212222111 11111 123333444455556666666666667777775 56677666665554331
Q ss_pred -c----ccccccccCcccchhhhhhhhhcc--cccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHH
Q 012910 173 -T----SETSFCEEDELTDDPHEMHAEKMH--VRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILS 245 (453)
Q Consensus 173 -~----~~~~~~~w~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (453)
. ......+||..|............ +...+++ +++ +++ ++.+..+.++.+|+|.++...
T Consensus 149 g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~--~~~--~~~----------~~~~~~~~~~~l~~~~~~~~~ 214 (390)
T TIGR02718 149 GGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRA--VAS--PEA----------PLARRASLFRFFRRPLAWSLL 214 (390)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCC--cCc--ccc----------chhhHHHHHHHHcCcCHHHHH
Confidence 1 112237899988777544332211 1111111 000 000 001123567889999988877
Q ss_pred HHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHH-HHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHH
Q 012910 246 FAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSI-WNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGH 324 (453)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i-~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~ 324 (453)
...++..........+.+.+++|.|+++++.+......++ ...++.++.|++.||+ ++++.+..+..+..+..
T Consensus 215 ~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~------g~~~~l~~~~~~~~~~~ 288 (390)
T TIGR02718 215 ALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA------GLWRTFILGVGLAGSLA 288 (390)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHH
Confidence 7777776666666677888889999999999999888775 6677899999999999 55555555544442222
Q ss_pred HH-HHh------cchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhcc-ccccchhhhhhhhhhhhhhhhhhhhhhhheecc
Q 012910 325 LI-IAS------GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGV-LQMGTIFNTITIANPVGSYIFSVRVVGYIYDRE 396 (453)
Q Consensus 325 ~~-~~~------~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~ 396 (453)
+. +.. ......+....+.+++.+..++.......+..++ +++++.+++.+....+|.. ++|.+.|.++|..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~-~g~~~~G~l~~~~ 367 (390)
T TIGR02718 289 LLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGEL-IASSIAGYLTDRF 367 (390)
T ss_pred HHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 22 111 1112223333444566677777777777777776 7889999999999999996 7999999999987
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHHH
Q 012910 397 ASGEGNKCTGTHCFMLSFFIMGSATLCGSL 426 (453)
Q Consensus 397 g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i 426 (453)
| |+..|...+++.+++.+
T Consensus 368 G------------~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 368 G------------YAGGFLSGTVLAVLAIL 385 (390)
T ss_pred c------------cHHHHHHHHHHHHHHHH
Confidence 7 78888887777666654
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-20 Score=181.61 Aligned_cols=360 Identities=10% Similarity=-0.046 Sum_probs=222.8
Q ss_pred cchhHHhh--cCCCccchhHHHHHHHHhhh-hcchhhhhhhc-cCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHH
Q 012910 35 YSPALKTT--QHYDQTTLDTVSVFKDIGAN-TGTLSGVLYTY-STSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYF 110 (453)
Q Consensus 35 ~~~~~~~~--~~~s~~~~~~i~~~~~~~~~-~~~~~g~l~dr-~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~ 110 (453)
+...++++ +|+|..+.+++.+.+.+... ..+++|+++|| +| ||+++.++.++.+++.+
T Consensus 33 L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G------------------~~~~l~~~~~~~~~g~~ 94 (475)
T TIGR00924 33 LAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWG------------------TKKTMVLGGIVLMLGHF 94 (475)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcc------------------hHHHHHHHHHHHHHHHH
Confidence 33345665 89999999976666655555 56899999999 89 99999999999999998
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CC---ccchhheecccCCCCcc--------cccc
Q 012910 111 LMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TY---SGTAVGIMKGSDSDRTS--------ETSF 178 (453)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~---rg~~~g~~~~~~~~~~~--------~~~~ 178 (453)
+++++ ++++.+++.|++.|+|.|...+...+++++++| ++ |+++.++...+.+++.. ....
T Consensus 95 ~~~~~-------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~ 167 (475)
T TIGR00924 95 MLAMS-------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAEN 167 (475)
T ss_pred HHHhc-------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 85443 467788889999999999999999999999996 33 77787776554444211 1112
Q ss_pred cccCcccchhhhhhhhh--ccc--ccCCCCcccCCCCCC-CCCCCCcC------------------CcC-----------
Q 012910 179 CEEDELTDDPHEMHAEK--MHV--RQDPVGYHRLPSEPD-VGTDTNDA------------------TTS----------- 224 (453)
Q Consensus 179 ~~w~~~~~~~~~~~~~~--~~l--~~~~~~~~~~~~~~~-~~~~~~~~------------------~~~----------- 224 (453)
.+|++.|.......... ..+ ....++.++++.+.+ ++.+.... .+.
T Consensus 168 ~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (475)
T TIGR00924 168 YGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVT 247 (475)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 58888887654321111 111 111111110000000 00000000 000
Q ss_pred ----------CCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhh-cCCCh----hhhhHHHHHHHHHHHH
Q 012910 225 ----------LWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSS----FETSSLISLWSIWNFL 289 (453)
Q Consensus 225 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~----~~~~~~~~~~~i~~~i 289 (453)
..++..+..+..|...+..+++...+.+.......+.++.+.++ .+.+. ...+.+.++..+.-++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil 327 (475)
T TIGR00924 248 LAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVV 327 (475)
T ss_pred HHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHH
Confidence 00000011111222234444444444444444445556665543 33221 2367788888888888
Q ss_pred HhhhhhhhhhhhhhccccCchhH--HHHHHHHHHHHHHHHH----------hcchhHHHHHHHHHHHhhhhhhhhhHHHH
Q 012910 290 GRFGAGYVSDYFLHVKEWARPLF--MVITLAAMSIGHLIIA----------SGLPGALYAGSILVGVCYGSQWSLMPTIA 357 (453)
Q Consensus 290 g~~~~G~l~Dr~~~~~~~~r~~~--~~~~~~~~~i~~~~~~----------~~~~~~~~~~~~l~g~~~g~~~~~~~~~~ 357 (453)
..++..++..|..+|.. +.+.. +.++.++.++++.... ..+.+++.+..++.+++.....|...+++
T Consensus 328 ~~p~~~~~~~~l~~~~~-~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~ 406 (475)
T TIGR00924 328 GSPVLAMIWTRLGRKGK-DPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWW 406 (475)
T ss_pred HHHHHHHHHHHHHhCCC-CCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 87776665556654421 22222 3566777766665543 23556777888999999999999999999
Q ss_pred hHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 012910 358 SEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFL 433 (453)
Q Consensus 358 ~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 433 (453)
.+..|++.||+.+|+..+...+|.. +++.+.....+..+ +...|...+++.++..++.+...+
T Consensus 407 ~~~aP~~~~g~~~g~~~l~~~~g~~-l~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 407 TKIAPQRLMGQMLGMWFLAQAMGSL-LGGYLATFGAVPQG------------VTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccc------------hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999986 56666666655544 566666666666655545444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-20 Score=175.70 Aligned_cols=327 Identities=13% Similarity=-0.002 Sum_probs=214.8
Q ss_pred hhcCcccccccchhHHhhcCCCccc-hhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHH
Q 012910 25 TSGSLYTFSIYSPALKTTQHYDQTT-LDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGA 102 (453)
Q Consensus 25 ~~g~~~~~~~~~~~~~~~~~~s~~~-~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~ 102 (453)
..-+....+...|.+.+|+|+|..| .|.+.+.+..++.. .+++|++.||+| .|+++.++.
T Consensus 38 ~~e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG------------------~K~vL~l~~ 99 (511)
T TIGR00806 38 MAQFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLR------------------YKPVLVLQA 99 (511)
T ss_pred HHHhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhC------------------chHHHHHHH
Confidence 3445777888999999999999999 88888888888875 599999999999 999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCcc-------
Q 012910 103 IQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRTS------- 174 (453)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~~------- 174 (453)
+.+++..++.+++ +++..+.+.|++.|+++|..+ +...++.+|+| ++|+++.|+..++..++..
T Consensus 100 l~Wsl~t~L~~fa-------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~q 171 (511)
T TIGR00806 100 LSFVCVWLLLLLG-------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQ 171 (511)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999996665 589999999999999999999 99999999998 8999999999776644211
Q ss_pred cccccccCcccchhhh----hh--hh-hcccccCCCCc--ccCCC-C---CCCCCCCCcCCc--CC---C-C-------C
Q 012910 175 ETSFCEEDELTDDPHE----MH--AE-KMHVRQDPVGY--HRLPS-E---PDVGTDTNDATT--SL---W-G-------G 228 (453)
Q Consensus 175 ~~~~~~w~~~~~~~~~----~~--~~-~~~l~~~~~~~--~~~~~-~---~~~~~~~~~~~~--~~---~-~-------~ 228 (453)
.....+|++.+....+ .. .+ ...++.+++.. ++++. + ..+.++..+++. .. + . .
T Consensus 172 ll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 251 (511)
T TIGR00806 172 LLVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRM 251 (511)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHH
Confidence 1233788876543311 11 11 11133222110 00000 0 000000000000 00 0 0 0
Q ss_pred CccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhhcCCC-hhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhcccc
Q 012910 229 DLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYS-SFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEW 307 (453)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s-~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~ 307 (453)
..++++..+|+......+...+.....+-+.++...+.++..-+ +...|.+-++..+.+.+..+..|++-.++.+.
T Consensus 252 ~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~--- 328 (511)
T TIGR00806 252 LSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARW--- 328 (511)
T ss_pred HHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhh---
Confidence 11233445667666555555555555555556565555554222 22556666777778888888999886555110
Q ss_pred CchhHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhh
Q 012910 308 ARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGS 381 (453)
Q Consensus 308 ~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 381 (453)
+ ...+.+..++.+..++++. .++.+..++..++++..+....++....+++....+..|..+|+.++...+-.
T Consensus 329 ~-~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQ 402 (511)
T TIGR00806 329 S-KLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALK 402 (511)
T ss_pred H-HHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHH
Confidence 1 2333444444444444444 56778888999999999998888888888888887888999998775544333
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-20 Score=180.51 Aligned_cols=374 Identities=10% Similarity=-0.029 Sum_probs=218.4
Q ss_pred ccccchhHHhhcCCCccchhHHHHHHH-Hhhhhcchhhhhhhc-cCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHH
Q 012910 32 FSIYSPALKTTQHYDQTTLDTVSVFKD-IGANTGTLSGVLYTY-STSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGY 109 (453)
Q Consensus 32 ~~~~~~~~~~~~~~s~~~~~~i~~~~~-~~~~~~~~~g~l~dr-~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~ 109 (453)
.+.+...+++++|++.++.+++...+. ..+...+++|+++|| +| ||+++.++.+++.++.
T Consensus 34 ~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G------------------~r~~~~~g~~~~~~g~ 95 (489)
T PRK10207 34 QGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLG------------------TKRTIVLGAIVLAIGY 95 (489)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccc------------------hHHHHHHHHHHHHHHH
Confidence 345556778899999999987655554 555567899999999 99 9999999999999999
Q ss_pred HHHHHHHhcCCCCCC-HHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-C--CccchhheecccCCCCc--------cccc
Q 012910 110 FLMWASVVGLIPRPP-VPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-T--YSGTAVGIMKGSDSDRT--------SETS 177 (453)
Q Consensus 110 ~~~~~~~~~~~~~~~-~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~--~rg~~~g~~~~~~~~~~--------~~~~ 177 (453)
++++++ ++ ...+++.|+++|+|.|...+...+++.|+|| + +|+++.++...+.+++. ....
T Consensus 96 ~~~~~~-------~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~ 168 (489)
T PRK10207 96 FMTGMS-------LLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD 168 (489)
T ss_pred HHHHHh-------ccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 986553 23 3345589999999999999999999999996 4 34666666655554422 1122
Q ss_pred ccccCcccchhhhhhhh----hcccccCCCCcccCCCCCCCCCCCC-----------------cCC-cCCC---------
Q 012910 178 FCEEDELTDDPHEMHAE----KMHVRQDPVGYHRLPSEPDVGTDTN-----------------DAT-TSLW--------- 226 (453)
Q Consensus 178 ~~~w~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~-----------------~~~-~~~~--------- 226 (453)
..+|++.|......... +...+...++..+++.+++.+.... .+. ....
T Consensus 169 ~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 248 (489)
T PRK10207 169 KFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIV 248 (489)
T ss_pred hhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 37899988775221111 1111111111110110000000000 000 0000
Q ss_pred ------CCCccHHHHhhhhHHHHHHHH--HHhhhcchhhecccHHHhhhh-cCCCh----hhhhHHHHHHHHHHHHHhhh
Q 012910 227 ------GGDLDLLQAICTLEFWILSFA--MACGMGSGLATVNNISQIGGS-LGYSS----FETSSLISLWSIWNFLGRFG 293 (453)
Q Consensus 227 ------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~g~s~----~~~~~~~~~~~i~~~ig~~~ 293 (453)
.+.....+.+|+|.+....+. ..+.+.......+.++.+.++ .+.+. -..+...++..+..++..++
T Consensus 249 ~~~~f~~~~~~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl 328 (489)
T PRK10207 249 VTIIFFREAFKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPI 328 (489)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHH
Confidence 000000134555554433322 333334444444556666653 22211 12344555566777788888
Q ss_pred hhhhhhhhhhccc-cCchhHHHHHHHHHHHHHHHH-------H-h---cchhHHHHHHHHHHHhhhhhhhhhHHHHhHhh
Q 012910 294 AGYVSDYFLHVKE-WARPLFMVITLAAMSIGHLII-------A-S---GLPGALYAGSILVGVCYGSQWSLMPTIASEIF 361 (453)
Q Consensus 294 ~G~l~Dr~~~~~~-~~r~~~~~~~~~~~~i~~~~~-------~-~---~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~ 361 (453)
.+++.||+++|+. .+...-+.++.++.+++++.+ . . .+.+++....++.|++.+...+.....+.+..
T Consensus 329 ~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~a 408 (489)
T PRK10207 329 LAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALV 408 (489)
T ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence 9999999976531 111223445555555555321 1 1 12345666778899999999999999999999
Q ss_pred ccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 012910 362 GVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFL 433 (453)
Q Consensus 362 ~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 433 (453)
|++.+|.++|+.++..++|+. ++..+.+........ .+. ......|.+.|...++..++..++.+...+
T Consensus 409 P~~~~g~~~g~~~l~~~ig~~-lg~~l~~~~~~~~~~-~~~-~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~ 477 (489)
T PRK10207 409 PQHLMGFILGMWFLTQAAAFL-LGGYVATFTAVPDNI-TDP-LETLPVYTNVFGKIGLVTLGVAVVMALMVP 477 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccccc-ccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888886 455444433211000 000 000112567777777666666555544443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-20 Score=170.53 Aligned_cols=393 Identities=13% Similarity=0.068 Sum_probs=263.7
Q ss_pred hhccccHHHHHHHHHHHHhhcC-cccccccchhHHhhcCCCccchhHHHHHHHHhhh-hcchhhhhhhccCCCCCCCCcc
Q 012910 7 LRLNTRWVSTVASIWIQCTSGS-LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGAN-TGTLSGVLYTYSTSDHSSHHPR 84 (453)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~-~~~~~g~l~dr~g~~~~~~~p~ 84 (453)
+..+|||.++++..+..++.+. ...|+....+...-++ +.+..-|.+..+.+.++ +++++-|+.||+|
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~G--------- 107 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFG--------- 107 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccc---------
Confidence 4578999999999999998888 4568888888888888 54445577777766666 6889999999999
Q ss_pred hhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHH--HHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccch
Q 012910 85 QQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVP--VMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTA 161 (453)
Q Consensus 85 ~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~ 161 (453)
-|...+++..+.++|..+-..+...+.+ +.++ ....+..+.+.++..+.........-||| +||..|
T Consensus 108 ---------LR~a~llgt~ln~iGa~Ir~iss~p~v~-~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A 177 (480)
T KOG2563|consen 108 ---------LRTALLLGTVLNGIGAWIRLISSLPFVP-PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIA 177 (480)
T ss_pred ---------hHHHHHHHHHHHHHHHHHhhhccCcccc-ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhh
Confidence 9999999999999999986555233333 3455 67789999999999888777888889995 999999
Q ss_pred hheecccCCCCc----------ccccc----cccCcc--cchhhhhhhhhccc--ccCCCCcccCCCCCCCCCCCCcCCc
Q 012910 162 VGIMKGSDSDRT----------SETSF----CEEDEL--TDDPHEMHAEKMHV--RQDPVGYHRLPSEPDVGTDTNDATT 223 (453)
Q Consensus 162 ~g~~~~~~~~~~----------~~~~~----~~w~~~--~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (453)
..+-..+..++. ++... ..|.-. |............+ ...+++ ++.++......+
T Consensus 178 ~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~-P~tPps~s~~~~------ 250 (480)
T KOG2563|consen 178 TVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKK-PPTPPSASQAAL------ 250 (480)
T ss_pred hhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCCchhHhhh------
Confidence 888777654421 11110 122211 12111222221111 111111 111111111000
Q ss_pred CCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 012910 224 SLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLH 303 (453)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~ 303 (453)
.+.+-..+.++.++|++|..+.+++....+.++...+.+...+...|++...+|.......++++++..+.|.+.||.++
T Consensus 251 ~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~ 330 (480)
T KOG2563|consen 251 QDASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKK 330 (480)
T ss_pred hcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 01123457788999999999999988888877777766666666668888899999999999999999999999999963
Q ss_pred ccccCchhHHHHHHHHHHHH-HHHHH----hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhh
Q 012910 304 VKEWARPLFMVITLAAMSIG-HLIIA----SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANP 378 (453)
Q Consensus 304 ~~~~~r~~~~~~~~~~~~i~-~~~~~----~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 378 (453)
- +..+.+......++ +.+.. ....+.++....++|++..+..|+...+..|..-|..-++..|+.++.+.
T Consensus 331 f-----k~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq 405 (480)
T KOG2563|consen 331 F-----KLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQ 405 (480)
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehh
Confidence 2 33344444444444 22222 22334566777888999888999988888998777889999999998777
Q ss_pred hhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 012910 379 VGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKRFYN 440 (453)
Q Consensus 379 ~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~ 440 (453)
+-+.+ -..+.+...+..+.. ..+...-+.+....+++.++..+++.+.|+.+.
T Consensus 406 ~f~~~-~~~~~~~~~~~~~~~--------~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~~ 458 (480)
T KOG2563|consen 406 IFGVI-LVFIMGILAEDLGPP--------GNTFPANIFLTVSALLGAILVAFFRPDYRRLRA 458 (480)
T ss_pred HHHHH-HHHHHHHHhhccCCC--------CCCccchhHhHHHHHHHHHHHhhhhhhHHhHhh
Confidence 77753 455666666655421 112333445555566666666666665555443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9e-22 Score=167.80 Aligned_cols=332 Identities=12% Similarity=0.021 Sum_probs=217.0
Q ss_pred ccccchhHHhhcCCCccchhHHHHHHHHhhh-hcchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHH
Q 012910 32 FSIYSPALKTTQHYDQTTLDTVSVFKDIGAN-TGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYF 110 (453)
Q Consensus 32 ~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~-~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~ 110 (453)
.+.++.+.+.|.+++.++..++-+.+..-.+ ...++|++.||.- |.|...++-+....+|.+
T Consensus 63 p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~f-----------------gir~gtii~~~fv~~Gql 125 (459)
T KOG4686|consen 63 PGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRF-----------------GIRLGTIILCIFVFLGQL 125 (459)
T ss_pred chhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhh-----------------hhhHHHHHHHHHHHHHHH
Confidence 5667788888899998888876666666665 4689999999742 255555555555566666
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCccc---ccc--cccCcc
Q 012910 111 LMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRTSE---TSF--CEEDEL 184 (453)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~~~---~~~--~~w~~~ 184 (453)
+++. +-.. +.+|.+.++|++.|+|.-..-.+-++++..||. |+.+.++|+..+..-++... ..+ .+.-..
T Consensus 126 iFa~---Ggi~-~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~ 201 (459)
T KOG4686|consen 126 IFAA---GGIS-HAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGR 201 (459)
T ss_pred HHHh---chHH-HHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHH
Confidence 6442 2222 689999999999999998888888888899996 99999999875443222110 000 000000
Q ss_pred cc------------hhhhhhhh---hcccccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHH
Q 012910 185 TD------------DPHEMHAE---KMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMA 249 (453)
Q Consensus 185 ~~------------~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (453)
+. .+....+. ...+...-.++..+..-..++...-+ .++.. + ..- -.|++|.+.+.++
T Consensus 202 ~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~e~g~~Ge--~pkLt---d-v~~-f~ppfw~~~iicv 274 (459)
T KOG4686|consen 202 MFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHLEEGFLGE--EPKLT---D-VNT-FYPPFWVLVIICV 274 (459)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcCcccC--Ccccc---c-ccc-cCccHHHHHHHHH
Confidence 00 00000000 00000000000000000000000000 11100 0 011 1478999999999
Q ss_pred hhhcchhhecccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH
Q 012910 250 CGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA 328 (453)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~ 328 (453)
+.+.+..-++..-|.++++ +|+|+..++.+.+.....+.+.+++.|.++||.|++ .+.+..+++....+...+.
T Consensus 275 ~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n-----~~wv~~a~~~tl~~H~~l~ 349 (459)
T KOG4686|consen 275 LYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFN-----LWWVASACILTLLGHSGLF 349 (459)
T ss_pred HHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcce-----ehhHHHHHHHHHHHhhhHH
Confidence 9888888888877888875 599999999999999999999999999999999643 2333344444445554444
Q ss_pred hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCC
Q 012910 329 SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREAS 398 (453)
Q Consensus 329 ~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~ 398 (453)
. +.+..+..+.+.|+.+.......+..++.+.|+++.|+++|.++...++|-. +.|.+.|.+.|..|+
T Consensus 350 F-t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla-~i~Iiag~i~d~~g~ 417 (459)
T KOG4686|consen 350 F-TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLA-FIPIIAGFIADGDGS 417 (459)
T ss_pred h-hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhh-HHhhhhheeecCCCc
Confidence 2 2234466777888888887777788889999999999999999999999986 688899999998875
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.1e-21 Score=192.26 Aligned_cols=257 Identities=12% Similarity=-0.038 Sum_probs=176.9
Q ss_pred ccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHH
Q 012910 30 YTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAG 108 (453)
Q Consensus 30 ~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~ 108 (453)
...+...+.++++|+++..+.|++.+.+.+++.+ .++.|++.||+| ||+++.++.+++++|
T Consensus 50 g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~------------------r~~~i~~g~ll~~lg 111 (633)
T TIGR00805 50 GLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLH------------------RPIVIGIGCAIMGLG 111 (633)
T ss_pred HHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccC------------------cceEEEecHHHHHHH
Confidence 4467778999999999999999888888888875 599999999999 999999999999999
Q ss_pred HHHHHHHH--hc--------------------C---C-----------------C--CCCHHHHHHHHHHHHhhhhhHhh
Q 012910 109 YFLMWASV--VG--------------------L---I-----------------P--RPPVPVMCLFMLFAAHGMTFFNT 144 (453)
Q Consensus 109 ~~~~~~~~--~~--------------------~---~-----------------~--~~~~~~l~~~r~l~G~g~~~~~~ 144 (453)
.+++++.. .+ . . . ...+..++++|+++|+|.+..++
T Consensus 112 ~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~ 191 (633)
T TIGR00805 112 SFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFP 191 (633)
T ss_pred HHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchh
Confidence 99977642 00 0 0 0 01355677999999999999999
Q ss_pred hhhHhHhhhcC-CCccchhheecccCCCCcc---------c---------------ccccc------cCcccchhhhhhh
Q 012910 145 ADVVTSVRNFP-TYSGTAVGIMKGSDSDRTS---------E---------------TSFCE------EDELTDDPHEMHA 193 (453)
Q Consensus 145 ~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~~---------~---------------~~~~~------w~~~~~~~~~~~~ 193 (453)
...+++.|++| ++|++++|+...+..++.. . ..+.+ |+..|.+.+.+..
T Consensus 192 ~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~ 271 (633)
T TIGR00805 192 LGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVAL 271 (633)
T ss_pred cCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 99999999997 8899999998665443110 0 01112 3333443332222
Q ss_pred hhcc-cccCCCCcccC----CCCCCCCCCCCc-CCcC-C------CCCCccHHHHhhhhHHHHHHHHHHhhhcchhhecc
Q 012910 194 EKMH-VRQDPVGYHRL----PSEPDVGTDTND-ATTS-L------WGGDLDLLQAICTLEFWILSFAMACGMGSGLATVN 260 (453)
Q Consensus 194 ~~~~-l~~~~~~~~~~----~~~~~~~~~~~~-~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (453)
+... +...|++.+++ +.+.+++...++ +.+. . .+.....+++++||.++...+..++.......+..
T Consensus 272 l~~v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~ 351 (633)
T TIGR00805 272 LTSIPFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYIT 351 (633)
T ss_pred HHHHHHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 11111111100 000000000000 0000 0 00112456789999999999999998888888999
Q ss_pred cHHHhhhh-cCCChhhhhHHHHHHHH-HHHHHhhhhhhhhhhhhhc
Q 012910 261 NISQIGGS-LGYSSFETSSLISLWSI-WNFLGRFGAGYVSDYFLHV 304 (453)
Q Consensus 261 ~~~~~~~~-~g~s~~~~~~~~~~~~i-~~~ig~~~~G~l~Dr~~~~ 304 (453)
++|.++++ +|+++.+++++.....+ +.++|.+++|+++||++.+
T Consensus 352 ~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~ 397 (633)
T TIGR00805 352 FLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN 397 (633)
T ss_pred HHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence 99999985 79999999999988776 5689999999999999643
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.2e-20 Score=178.22 Aligned_cols=345 Identities=13% Similarity=0.030 Sum_probs=233.6
Q ss_pred hHHhhcCCCccchhHHHHHHHHhhh-hcchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHHHHHHH
Q 012910 38 ALKTTQHYDQTTLDTVSVFKDIGAN-TGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASV 116 (453)
Q Consensus 38 ~~~~~~~~s~~~~~~i~~~~~~~~~-~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~ 116 (453)
-+..+..-|...++++.....+-.+ +++++|.++||+. ||++++.+-++.++..+.+++.
T Consensus 35 wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~d------------------rrrili~~~~~~~~~~~~L~~l- 95 (524)
T PF05977_consen 35 WLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFD------------------RRRILILSQLLRALVALLLAVL- 95 (524)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccc------------------chHHHHHHHHHHHHHHHHHHHH-
Confidence 3445566677888877666666654 6899999999999 9999999998887666655543
Q ss_pred hcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCC--cccc------cccccCcccch
Q 012910 117 VGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDR--TSET------SFCEEDELTDD 187 (453)
Q Consensus 117 ~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~--~~~~------~~~~w~~~~~~ 187 (453)
. .....+.+.+++.-++.|++.+...|+-.+++.+..| ++...++++.+....+. ..|. ...|-.+.|.+
T Consensus 96 ~-~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~i 174 (524)
T PF05977_consen 96 A-FFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLI 174 (524)
T ss_pred H-HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 1 2222478999999999999999999999999999998 67788888876555431 1111 11333334432
Q ss_pred hhh--hhhhhcccccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHh
Q 012910 188 PHE--MHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQI 265 (453)
Q Consensus 188 ~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (453)
-.. +..+......+++.. +++.+++ +...+....++...++|......+..++.......+...+|.+
T Consensus 175 nalsfl~~i~~l~~~~~~~~--~~~~~~e--------~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~ 244 (524)
T PF05977_consen 175 NALSFLISILALLRWKPPPP--PSSLPRE--------RFFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLF 244 (524)
T ss_pred HHHHHHHHHHHHHHcccccc--ccccchh--------hhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHH
Confidence 211 111111122222111 0000000 0011112234445556666555544444444333444567888
Q ss_pred hh-hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHH
Q 012910 266 GG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSILVG 343 (453)
Q Consensus 266 ~~-~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~g 343 (453)
.+ .+|.++...|++.+..+++.++|.++.+++.+|+ ++..++..+.++.+++.+.+. .++.+...+..++.|
T Consensus 245 a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~------~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G 318 (524)
T PF05977_consen 245 ARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL------SSRRLVLLASLLFALALLLLALSPSFWLALIALFLAG 318 (524)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc------CcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 76 4699999999999999999999999999988887 555666677777777777666 345555666778889
Q ss_pred HhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHH
Q 012910 344 VCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLC 423 (453)
Q Consensus 344 ~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~ 423 (453)
++.........+.+.+..|++.+|+..++..+....+.. +|..+.|.+.|..| .+.++.+.++..++
T Consensus 319 ~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~-lGsll~G~la~~~g------------~~~al~~a~~~lll 385 (524)
T PF05977_consen 319 AAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMP-LGSLLWGFLADHFG------------VRTALLIAGAALLL 385 (524)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhC------------HHHHHHHHHHHHHH
Confidence 988888888889999999999999999999877766664 68889999999987 47777777766666
Q ss_pred HHHHHHHH
Q 012910 424 GSLAAFGL 431 (453)
Q Consensus 424 ~~i~~~~~ 431 (453)
+.++....
T Consensus 386 ~~~~~~~~ 393 (524)
T PF05977_consen 386 SALIALRF 393 (524)
T ss_pred HHHHHHHh
Confidence 65544433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=169.94 Aligned_cols=332 Identities=12% Similarity=-0.042 Sum_probs=194.3
Q ss_pred cchhHHhhcCCCccchhHHHHHHH-HhhhhcchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHHHH
Q 012910 35 YSPALKTTQHYDQTTLDTVSVFKD-IGANTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMW 113 (453)
Q Consensus 35 ~~~~~~~~~~~s~~~~~~i~~~~~-~~~~~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~ 113 (453)
+.+.+.+++|+|..++|++.+... ..++..|+.|.++||.++|+||| |+.++.+.+..++..+++.
T Consensus 32 l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grr-------------rp~il~~~~~~~i~~~l~f 98 (444)
T PRK09669 32 LAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQF-------------RPYLLWFAIPFGVVCLLTF 98 (444)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCc-------------chhHHHHHHHHHHHHHHHH
Confidence 345677889999999996655555 45556799999999988544432 4556667677777665543
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC--CCccchhheecccCCC----Cc---cccc-------
Q 012910 114 ASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP--TYSGTAVGIMKGSDSD----RT---SETS------- 177 (453)
Q Consensus 114 ~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p--~~rg~~~g~~~~~~~~----~~---~~~~------- 177 (453)
..+ ..........+++..++.+.+......+-.++..|+.+ ++|.+..+.-..+..+ .. .|..
T Consensus 99 ~~p-~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~ 177 (444)
T PRK09669 99 YTP-DFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGD 177 (444)
T ss_pred hCC-CCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 321 11111234556666667777777777777777788873 7888765554322211 10 1111
Q ss_pred -ccccCcccchhhhhhhhhcccccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchh
Q 012910 178 -FCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGL 256 (453)
Q Consensus 178 -~~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (453)
..+|+..+.+...+..+...+.....+++.+++ ++ ++.....+.++.+|||.++.+++..++......
T Consensus 178 ~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~--~~---------~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~ 246 (444)
T PRK09669 178 EQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPE--VD---------NSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVV 246 (444)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCC--Cc---------CCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence 124444444333332222111111111110000 00 001122356788999999888776665544443
Q ss_pred hecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHH-HHH--hcchh
Q 012910 257 ATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHL-IIA--SGLPG 333 (453)
Q Consensus 257 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~-~~~--~~~~~ 333 (453)
.......++.+..--+++..+.......+..+++.+++++++||+ +++.....+.++..+... ++. .++.+
T Consensus 247 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~------gk~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (444)
T PRK09669 247 TRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKF------DRVRAFKWTIVAFVILSALIFFIPPSNVW 320 (444)
T ss_pred HHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------ChHHHHHHHHHHHHHHHHHHHHhCcchHH
Confidence 333323333333222233444555566678888999999999999 445555555444433222 222 23444
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHhHhhc-------cccccchhhhhhhhhhhhhhhhhhhhhhhheeccCC
Q 012910 334 ALYAGSILVGVCYGSQWSLMPTIASEIFG-------VLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREAS 398 (453)
Q Consensus 334 ~~~~~~~l~g~~~g~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~ 398 (453)
.+++..++.|++.+...+...++++|..+ ++..|..+|..+....+|.. +++.+.|.+.+..|-
T Consensus 321 ~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~a-lg~~i~g~ll~~~Gy 391 (444)
T PRK09669 321 LIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLA-IGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCC
Confidence 45666678899999999999999988875 23345567787788888885 688889999887764
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.4e-20 Score=166.20 Aligned_cols=390 Identities=13% Similarity=-0.033 Sum_probs=234.7
Q ss_pred HHHHhhcC-cccccccchhHHhhcC--------CCccchhHHHHHHHHhhhhc-chhhhhhhccCCCCCCCCcchhhhhh
Q 012910 21 WIQCTSGS-LYTFSIYSPALKTTQH--------YDQTTLDTVSVFKDIGANTG-TLSGVLYTYSTSDHSSHHPRQQRLTR 90 (453)
Q Consensus 21 ~~~~~~g~-~~~~~~~~~~~~~~~~--------~s~~~~~~i~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~p~~g~~~~ 90 (453)
...+..+. .++++...|.+...+. ++....+.+.....+|.+++ ++.|++.||+|
T Consensus 48 ~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~G--------------- 112 (538)
T KOG0252|consen 48 MGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFG--------------- 112 (538)
T ss_pred hhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhc---------------
Confidence 33334443 5667777776665441 33334447788888999875 99999999999
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccC
Q 012910 91 LLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSD 169 (453)
Q Consensus 91 ~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~ 169 (453)
||++....+++..++++++++...--....-..++.++|++.|+|.|.-||.+.++.+|... ++||...+.+.+..
T Consensus 113 ---RK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Q 189 (538)
T KOG0252|consen 113 ---RKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQ 189 (538)
T ss_pred ---chhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEec
Confidence 99999999999999999765541111110124567799999999999999999999999885 89999999987766
Q ss_pred CCCcc-----------------cc------cccccCcccchhhhhhhhhcccccCC-C--Ccc-----c-C---CCCCC-
Q 012910 170 SDRTS-----------------ET------SFCEEDELTDDPHEMHAEKMHVRQDP-V--GYH-----R-L---PSEPD- 213 (453)
Q Consensus 170 ~~~~~-----------------~~------~~~~w~~~~~~~~~~~~~~~~l~~~~-~--~~~-----~-~---~~~~~- 213 (453)
+.+.. +. ...-||..+.+-..........+... + ++. + + ++.++
T Consensus 190 g~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~ 269 (538)
T KOG0252|consen 190 GFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKV 269 (538)
T ss_pred chhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccc
Confidence 55211 10 11335554433222211111111110 0 000 0 0 00000
Q ss_pred ------CCCCCCcCCcCCCCCCccHHHHhhhh---HHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhH------
Q 012910 214 ------VGTDTNDATTSLWGGDLDLLQAICTL---EFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSS------ 278 (453)
Q Consensus 214 ------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~------ 278 (453)
++++.+.+.++.......+.+.+..+ .....+...|+.-.+.+....+...+++++|+.+.+...
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~v 349 (538)
T KOG0252|consen 270 LSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKV 349 (538)
T ss_pred cccccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHH
Confidence 00000000011111111123333333 333344455555556666666777888877776554443
Q ss_pred --HHHHHHHHHH-HHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHhcc--h---hHHHHHH-HHHHHhhhhh
Q 012910 279 --LISLWSIWNF-LGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGL--P---GALYAGS-ILVGVCYGSQ 349 (453)
Q Consensus 279 --~~~~~~i~~~-ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~--~---~~~~~~~-~l~g~~~g~~ 349 (453)
...+...++. .|-.+...++|++ +|++..+.+..++.+..+.+..+. . ....+.. +..-++.-+.
T Consensus 350 A~~~~iia~~~~vPGyw~tv~~id~i------GRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGP 423 (538)
T KOG0252|consen 350 AEGNLIIAVCSTVPGYWFTVYFIDII------GRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGP 423 (538)
T ss_pred HHHHHHHHHHccCCceeEEEEEeehh------hhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCC
Confidence 2233333333 3667788899999 788999999999988888876221 1 1122222 2222333344
Q ss_pred hhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHH
Q 012910 350 WSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAF 429 (453)
Q Consensus 350 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~ 429 (453)
......+.+|.+|.+.|++..|+....+-+|+. ++......+.++.-. ...+.+.++++.+++++++.+..+
T Consensus 424 n~ttfivpaE~FParvR~t~hGIsAA~GK~GAi-vg~~~F~~~t~~~yp-------~~~g~~~v~~i~~~~~~~gi~~T~ 495 (538)
T KOG0252|consen 424 NATTFIVPAEIFPARVRSTCHGISAASGKAGAI-VGAFGFLYLTDHNYP-------PNIGVRNVFIILAGCMLLGILFTL 495 (538)
T ss_pred CceeEEeehhhchHHHhhhhhhHHHHhccchHH-HHHHHhhHhhhccCC-------ccccchHHHHHHHHHHHHhHheeE
Confidence 455667789999999999999999999999985 677666666662100 011279999999999999997777
Q ss_pred HHhhhhhhhhHHHH
Q 012910 430 GLFLRTKRFYNEVI 443 (453)
Q Consensus 430 ~~~~~~~~~~~~~~ 443 (453)
++. +++++..++.
T Consensus 496 l~p-Etk~~~leei 508 (538)
T KOG0252|consen 496 LIP-ETKGKSLEEI 508 (538)
T ss_pred Eee-cccccCHHHh
Confidence 666 6555544443
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.4e-18 Score=160.79 Aligned_cols=353 Identities=13% Similarity=0.018 Sum_probs=225.2
Q ss_pred ccchhHHhhcCCCccchhHHHHHHHHhhhhc-chhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHHH
Q 012910 34 IYSPALKTTQHYDQTTLDTVSVFKDIGANTG-TLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLM 112 (453)
Q Consensus 34 ~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~ 112 (453)
++.+.+-++.|.|..|+|.+.+...+..+++ +++|.++||+++ +|+++.+..++.++.....
T Consensus 23 p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~-----------------~~~~l~~~~l~~~~~~~~~ 85 (400)
T PF03825_consen 23 PYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGS-----------------AKRILALLSLLSALALLLL 85 (400)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-----------------HHHHHHHHHHHHHHHHHHH
Confidence 3456667778999999998777777777754 899999999872 6777766666665554443
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcCC---CccchhheecccCCCCc-----ccccccccC--
Q 012910 113 WASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPT---YSGTAVGIMKGSDSDRT-----SETSFCEED-- 182 (453)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p~---~rg~~~g~~~~~~~~~~-----~~~~~~~w~-- 182 (453)
.. . ++++.++...++..+......|...++..++..+ +-|+.=-.=+.++.+.. ......++.
T Consensus 86 ~~-----~--~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~ 158 (400)
T PF03825_consen 86 AF-----S--SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGT 158 (400)
T ss_pred HH-----h--ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccc
Confidence 22 2 4777777777777777666666666666655432 22222111112222110 000111111
Q ss_pred -cccchhhhhhhhhccc-ccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhecc
Q 012910 183 -ELTDDPHEMHAEKMHV-RQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVN 260 (453)
Q Consensus 183 -~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (453)
..+++......+.... ...|+.. +++ +.++ +.++....+..+++|+|++....+..++.........+
T Consensus 159 ~~~~~i~~~~~~ll~~~~l~lp~~~-~~~-~~~~--------~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~ 228 (400)
T PF03825_consen 159 SLIFYIAAILSLLLAGFALFLPKTP-PKR-SAKE--------SVKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYT 228 (400)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCCc-ccc-ccCC--------CcccccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence 1222222211111111 1112111 000 0000 00111223446899999999888888888777777888
Q ss_pred cHHHhhhhcC-CChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHhc-ch-hHHHH
Q 012910 261 NISQIGGSLG-YSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASG-LP-GALYA 337 (453)
Q Consensus 261 ~~~~~~~~~g-~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~-~~~~~ 337 (453)
+.+.++++.| .+....+...++..++.++.-...+++..|+ +.++++.++.+..++-..++... ++ +...+
T Consensus 229 f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~------g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~ 302 (400)
T PF03825_consen 229 FFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF------GIKWLLLLALVAYAVRWLLYAYFSDPWPFIVA 302 (400)
T ss_pred HHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 8899999997 7877888888888888888888888888888 67788889999999888887632 33 33222
Q ss_pred H----HHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhh-hhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHH
Q 012910 338 G----SILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTIT-IANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFML 412 (453)
Q Consensus 338 ~----~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~ 412 (453)
. ..+.|+.++..+.....++.+..|++.++++.++.+ +..++|.. +|..+.|+++|+.|... .-.|..
T Consensus 303 ~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~-iG~~igG~l~~~~g~~~------~~~~~~ 375 (400)
T PF03825_consen 303 LQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGA-IGSLIGGWLYDAFGARG------MFDWSA 375 (400)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHhcchh------hhhHHH
Confidence 2 245899999999999999999999999999999987 45678885 68889999999987421 011344
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 012910 413 SFFIMGSATLCGSLAAFGLFL 433 (453)
Q Consensus 413 ~f~~~~~~~~~~~i~~~~~~~ 433 (453)
.+.+.+++.++..++.+++.+
T Consensus 376 ~~~v~a~~~~~~~~~f~~~fk 396 (400)
T PF03825_consen 376 VFLVFAVMALVILVLFVILFK 396 (400)
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 455555555555544444443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=169.75 Aligned_cols=328 Identities=9% Similarity=-0.025 Sum_probs=196.8
Q ss_pred cchhHHhhcCCCccchhHHHHHHHHhhh-hcchhhhhhhccCCCCCCCCcchhhhhhccCchH-HHHHHHHHHHHHHHHH
Q 012910 35 YSPALKTTQHYDQTTLDTVSVFKDIGAN-TGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWV-VLLVGAIQCFAGYFLM 112 (453)
Q Consensus 35 ~~~~~~~~~~~s~~~~~~i~~~~~~~~~-~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~-~~~~~~~~~~~~~~~~ 112 (453)
+.+.+++++|++..++|.+.....+... ..|+.|.++||.++| +|||+ .+..+.+...+...++
T Consensus 31 l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~--------------~Gr~~~~~~~~~~~~~~~~~~~ 96 (448)
T PRK09848 31 LLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTR--------------WGKFRPFLLFGTAPLMIFSVLV 96 (448)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCC--------------CcCchHHHHHHHHHHHHHHHHH
Confidence 3457888899999999976655555555 569999999999843 34555 4455555555444442
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhc--CCCccchhheecccCC-------CCcccccc--ccc
Q 012910 113 WASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNF--PTYSGTAVGIMKGSDS-------DRTSETSF--CEE 181 (453)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~--p~~rg~~~g~~~~~~~-------~~~~~~~~--~~w 181 (453)
...+............+..-++.+++.+...++..++..+.. +++|.+..++-..+.+ ....|... .+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~ 176 (448)
T PRK09848 97 FWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPE 176 (448)
T ss_pred HhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 211112221112333445566778888887776666656554 3678776554432211 11111110 110
Q ss_pred --Cccc----chhhhhhhhhccc--ccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhc
Q 012910 182 --DELT----DDPHEMHAEKMHV--RQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMG 253 (453)
Q Consensus 182 --~~~~----~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (453)
...+ .+...+..+...+ ...+|+. +++++ + ......+++++|||.++...+..++...
T Consensus 177 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~-----~~~~~-------~--~~~~~~~~~l~~n~~f~~~~~~~~~~~~ 242 (448)
T PRK09848 177 EMVSVYHFWTIVLAIAGMVLYFICFKSTRENV-----VRIVA-------Q--PSLKISLQTLKRNRPLFMLCIGALCVLI 242 (448)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHcCcEecc-----CCCcc-------C--CCHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 0011 1111111111111 1111110 00000 0 0112346778999999988887777766
Q ss_pred chhhecccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHh---
Q 012910 254 SGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS--- 329 (453)
Q Consensus 254 ~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~--- 329 (453)
.........+++.++ +|.++...++......++.+++.++.+++.||+ ++++.+..+.++..++.+.+..
T Consensus 243 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~------g~~~~~~~g~~~~~i~~~~~~~~~~ 316 (448)
T PRK09848 243 STFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI------GKKNTFLIGALLGTCGYLLFFWVSV 316 (448)
T ss_pred HHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CcHHHHHHHHHHHHHHHHHHHHcCc
Confidence 666666666777765 577666555555555677888999999999999 6667777777777666655542
Q ss_pred cchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccc-------cccchhhhhhhhhhhhhhhhhhhhhhhheeccC
Q 012910 330 GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVL-------QMGTIFNTITIANPVGSYIFSVRVVGYIYDREA 397 (453)
Q Consensus 330 ~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~-------~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g 397 (453)
.+.+...+..++.|++.+...+...++..|..+.+ +.|...|+.++...+|.. +++.+.|.+.+..|
T Consensus 317 ~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~a-ig~~i~g~~l~~~G 390 (448)
T PRK09848 317 WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQA-IGGSIPAFILGLSG 390 (448)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHcC
Confidence 22334445567788888888888888888877643 458888999999999986 68888888877665
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.2e-18 Score=166.93 Aligned_cols=371 Identities=12% Similarity=-0.027 Sum_probs=210.1
Q ss_pred ccchhHHhhcCCCccchhHHHHHHHHh-hhhcchhhhhhhc-cCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHH
Q 012910 34 IYSPALKTTQHYDQTTLDTVSVFKDIG-ANTGTLSGVLYTY-STSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFL 111 (453)
Q Consensus 34 ~~~~~~~~~~~~s~~~~~~i~~~~~~~-~~~~~~~g~l~dr-~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~ 111 (453)
.....+++++|+|.++.+++...+... ....+++|+++|| +| ||+++.++.++.+++..+
T Consensus 43 ~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G------------------~r~~~~~g~~~~~ig~~l 104 (500)
T PRK09584 43 IMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLG------------------TKRVIMLGAIVLAIGYAL 104 (500)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------------------hHHHHHHHHHHHHHHHHH
Confidence 344567789999999888655444433 3345789999999 59 999999999999999888
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcCCC---ccchhheecccCCCCc--c------cccccc
Q 012910 112 MWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTY---SGTAVGIMKGSDSDRT--S------ETSFCE 180 (453)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p~~---rg~~~g~~~~~~~~~~--~------~~~~~~ 180 (453)
++++ + ++.+.+++.|+++|+|.|...+...+++.++||++ |..+.++...+.+++. . .....+
T Consensus 105 ~~~~-----~-~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g 178 (500)
T PRK09584 105 VAWS-----G-HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG 178 (500)
T ss_pred HHHh-----c-ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5442 1 24566778899999999998888889999999743 3345665444433321 1 112268
Q ss_pred cCcccchhhhhhhh---hc-ccc-cCCCCcccCCCCCCCCCCCCc----------------CCcCCC-C-----------
Q 012910 181 EDELTDDPHEMHAE---KM-HVR-QDPVGYHRLPSEPDVGTDTND----------------ATTSLW-G----------- 227 (453)
Q Consensus 181 w~~~~~~~~~~~~~---~~-~l~-~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~-~----------- 227 (453)
|++.|........+ .. ... ..++. .++++.++.+..... ...++. .
T Consensus 179 ~~~~F~i~~i~~~i~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (500)
T PRK09584 179 WSVAFALSVVGMLITVVNFAFCQRWVKQY-GSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIV 257 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhccC-CCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 99988765421111 11 111 11111 001100000000000 000000 0
Q ss_pred -----CCccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhhc---CCC------hhhhhHHHHHHHHHHHHHhhh
Q 012910 228 -----GDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSL---GYS------SFETSSLISLWSIWNFLGRFG 293 (453)
Q Consensus 228 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~s------~~~~~~~~~~~~i~~~ig~~~ 293 (453)
......+.-+ ++.+..+.. ++....++.....++..+... ..+ ....+...++..+...+..++
T Consensus 258 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~ 335 (500)
T PRK09584 258 VIFGKEAFAMKGAAR-RKMIVAFIL-MLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPI 335 (500)
T ss_pred HHHHHHHhhcCHHHH-HHHHHHHHH-HHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHH
Confidence 0000001111 222222221 122222233333344443211 111 123556667777777777777
Q ss_pred hhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHhc----------chhHHHHHHHHHHHhhhhhhhhhHHHHhHhhcc
Q 012910 294 AGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASG----------LPGALYAGSILVGVCYGSQWSLMPTIASEIFGV 363 (453)
Q Consensus 294 ~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~ 363 (453)
.+++-+|.++|. +....+.++.++.+++++.+... +.++.....++.+++.....|...+++.+..|+
T Consensus 336 ~~~~~~~l~~r~--~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~ 413 (500)
T PRK09584 336 LAAIYNKMGDRL--PMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQ 413 (500)
T ss_pred HHHHHHHhCcCC--CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcH
Confidence 777777776554 45566778888888887775421 134666778899999999999999999999999
Q ss_pred ccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCcccc-ccchHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 012910 364 LQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTG-THCFMLSFFIMGSATLCGSLAAFGLFLRTKR 437 (453)
Q Consensus 364 ~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~-~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~ 437 (453)
+.||..+|...+...+|+.+ +..+.+........ ..... ..+|...|...+++.++..++.+...+..+|
T Consensus 414 ~~rg~~~g~~~l~~a~g~~~-~g~~~~~~~~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k 484 (500)
T PRK09584 414 RLMGFIMGSWFLTTAGAALI-AGYVANLMAVPDNV---TDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNR 484 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccccc---ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988887777753 33233322110000 00000 1126778888777766555555544443333
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-17 Score=162.03 Aligned_cols=328 Identities=12% Similarity=-0.039 Sum_probs=210.7
Q ss_pred cccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHH
Q 012910 29 LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFA 107 (453)
Q Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~ 107 (453)
....+...+.+..|+|-+ ....|+++...++... .++.|.++|.|| ||.+++++.++..+
T Consensus 60 ~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfG------------------Rr~~~i~g~~l~vv 120 (599)
T PF06609_consen 60 LVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFG------------------RRYFFIIGSLLGVV 120 (599)
T ss_pred HhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhc------------------chHHHHHHHHHHHh
Confidence 344456668899999865 5556777777777765 589999999999 99999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCc--c------cccc
Q 012910 108 GYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRT--S------ETSF 178 (453)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~--~------~~~~ 178 (453)
|.++ ++.+ +|...++.+..+.|+|.|.... ....++|..| |.|+...++.....-... . ....
T Consensus 121 G~Iv-----~atA--~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~ 192 (599)
T PF06609_consen 121 GSIV-----CATA--QNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAH 192 (599)
T ss_pred HHHH-----hhcC--CcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccC
Confidence 9999 4455 5999999999999999887664 4555789988 778766655543221111 0 1112
Q ss_pred cccCcccchhhhhhhhhc----ccccCCCCcccCCCCC--CC---C------------------------CCCC--cCC-
Q 012910 179 CEEDELTDDPHEMHAEKM----HVRQDPVGYHRLPSEP--DV---G------------------------TDTN--DAT- 222 (453)
Q Consensus 179 ~~w~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~--~~---~------------------------~~~~--~~~- 222 (453)
.+|||.|+.......+.. ....+|.....+.++. .+ + .... ++.
T Consensus 193 ~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~ 272 (599)
T PF06609_consen 193 SGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAH 272 (599)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcc
Confidence 689999987744332211 1223332211110000 00 0 0000 000
Q ss_pred ------------------cC--CCCCCccHHHHhhh-hHHHHHHHHHHhhhcchhhecccHHHhhhh-cCCCh---hhhh
Q 012910 223 ------------------TS--LWGGDLDLLQAICT-LEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSS---FETS 277 (453)
Q Consensus 223 ------------------~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~---~~~~ 277 (453)
+. ..++..-..+++|+ |.+...++..++..+.++....+.|..... ++-++ ...+
T Consensus 273 VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~ 352 (599)
T PF06609_consen 273 VIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIG 352 (599)
T ss_pred chhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceee
Confidence 10 00122334578887 556666666666655555555666666553 34433 3567
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH---hcchhHHHHHHHHHHHhhhhhhhhhH
Q 012910 278 SLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA---SGLPGALYAGSILVGVCYGSQWSLMP 354 (453)
Q Consensus 278 ~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~l~g~~~g~~~~~~~ 354 (453)
+.....+++..+|.++.|.+..+++| -|+.+.++.+++.+++-++. .++....+...++.|++.|.......
T Consensus 353 ~~s~~~~fg~~~g~~i~g~l~~~ir~-----~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~ 427 (599)
T PF06609_consen 353 WISSPVGFGSCAGAVILGLLFSKIRH-----IKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAI 427 (599)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHccc-----hhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHH
Confidence 78888899999999999999988752 34555566666655444443 33444455667788888888777777
Q ss_pred HHHhHhhccccccchhhhhhhhhhhhhhhhhhhhh
Q 012910 355 TIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVV 389 (453)
Q Consensus 355 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~ 389 (453)
..+.-..|+++.|++.|+......+|+.+ |..+.
T Consensus 428 ~~~ql~~p~~~ig~a~gL~~s~R~~GGsI-g~aIy 461 (599)
T PF06609_consen 428 VIAQLIVPDEDIGTATGLTGSIRSIGGSI-GYAIY 461 (599)
T ss_pred HeeEeeeCchHHHHHHHHHHHHHHHhhHH-HHHHH
Confidence 77777789999999999998887777753 44344
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.7e-18 Score=167.82 Aligned_cols=354 Identities=16% Similarity=0.053 Sum_probs=223.3
Q ss_pred chhHHHHHHHHhhhhc-chhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHH
Q 012910 49 TLDTVSVFKDIGANTG-TLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPV 127 (453)
Q Consensus 49 ~~~~i~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (453)
+.+++.+...+++..+ +++|+++|++| ||+.++++.+++.+|.++++++ +++.+
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~G------------------Rk~~l~~~~~~~~iG~ii~~~a-------~~~~~ 144 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRIG------------------RKKTLLLAVVLFLIGAIIIALA-------PSWYQ 144 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------hHHHHHHHHHHHHHHHHHHHHh-------hhHHH
Confidence 4478888888888865 99999999999 9999999999999999997666 69999
Q ss_pred HHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCcc-------ccc--ccccCcccchhhhhhhhh--
Q 012910 128 MCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRTS-------ETS--FCEEDELTDDPHEMHAEK-- 195 (453)
Q Consensus 128 l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~~-------~~~--~~~w~~~~~~~~~~~~~~-- 195 (453)
++++|+++|+|.|........+++|.-| +.||...+.......++.. ... ..+||..+..........
T Consensus 145 l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~ 224 (513)
T KOG0254|consen 145 LIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILAL 224 (513)
T ss_pred HHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 7999988887655433211 111 136885554432221111
Q ss_pred --cccccCCCCcccCCCCC-------------CCCCCCCc-----C---CcCCCCCCccHHHHh----hhhHHHHHHHHH
Q 012910 196 --MHVRQDPVGYHRLPSEP-------------DVGTDTND-----A---TTSLWGGDLDLLQAI----CTLEFWILSFAM 248 (453)
Q Consensus 196 --~~l~~~~~~~~~~~~~~-------------~~~~~~~~-----~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 248 (453)
..+++.|+...+...++ +++.+.+. + .....+.+..+.+++ +++.++...+..
T Consensus 225 ~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~ 304 (513)
T KOG0254|consen 225 GMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQL 304 (513)
T ss_pred HHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHH
Confidence 11222222111111000 00000000 0 000001111123333 233344455555
Q ss_pred HhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH
Q 012910 249 ACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA 328 (453)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~ 328 (453)
+..........++.+.+++..|.+... .....+.++.+.++..+..++.||+ +||++++.+...+.++..++.
T Consensus 305 fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~------gRr~lll~s~~~m~~~~~~~~ 377 (513)
T KOG0254|consen 305 FQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF------GRRKLLLFGAAGMSICLVILA 377 (513)
T ss_pred HHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHhHHHHHHHHHHHH
Confidence 555555567778888999988887544 6667778888888999999999999 788899999888888887755
Q ss_pred h-----cc----h----hHHHHHHHHHHHhhhh-hhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhhee
Q 012910 329 S-----GL----P----GALYAGSILVGVCYGS-QWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYD 394 (453)
Q Consensus 329 ~-----~~----~----~~~~~~~~l~g~~~g~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~ 394 (453)
. .. . +...+...++-..+.. ..+..+.+.+|.+|.+.|+++.++....+.+.++++.- ..-...+
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~-~~~~~~~ 456 (513)
T KOG0254|consen 378 VVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISF-FFPFITE 456 (513)
T ss_pred HHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 1 11 1 1122222222222222 33444467899999999999999998888777765321 2222222
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHHHHHH-HHHHHhhhhhhhhHHHHHHHh
Q 012910 395 REASGEGNKCTGTHCFMLSFFIMGSATLCGSL-AAFGLFLRTKRFYNEVILRRL 447 (453)
Q Consensus 395 ~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~ 447 (453)
..+ ....|...++.+.+..+ ...+..+++|.+..++.++..
T Consensus 457 ~~~------------~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~ 498 (513)
T KOG0254|consen 457 ALG------------IGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELF 498 (513)
T ss_pred hcc------------ccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHH
Confidence 221 13456666666666655 566666777777766665543
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.3e-22 Score=193.83 Aligned_cols=351 Identities=14% Similarity=0.042 Sum_probs=219.1
Q ss_pred chhHHHHHHHHhhhhc-chhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCC---C
Q 012910 49 TLDTVSVFKDIGANTG-TLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRP---P 124 (453)
Q Consensus 49 ~~~~i~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 124 (453)
+.+++.+...++..++ ++.|.++||+| ||++++++.++..++.++.+++ + +
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~G------------------Rk~~~~~~~~~~~i~~~~~~~~-------~~~~~ 101 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYG------------------RKPALIISALLMIIGSILIAFA-------PSYNN 101 (451)
T ss_pred HHHHHHHHHHhhhccccccccccccccc------------------cccccccccccccccccccccc-------ccccc
Confidence 3557778888888875 99999999999 9999999999999999994443 4 8
Q ss_pred HHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCcccc--------c---ccccCcccchhhhhh
Q 012910 125 VPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRTSET--------S---FCEEDELTDDPHEMH 192 (453)
Q Consensus 125 ~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~~~~--------~---~~~w~~~~~~~~~~~ 192 (453)
++.+.++|+++|++.|...+....++.|..| ++||+..++...+..++.... . ...||..+.......
T Consensus 102 ~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~ 181 (451)
T PF00083_consen 102 FWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPS 181 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999999999999999999999986 899999999877665432110 1 134887776653333
Q ss_pred hhh----cccccCCCCcccCCCCCCC------------CCCCCcCC----cCCCCCCccHHHHhhhhH----HHHHHHHH
Q 012910 193 AEK----MHVRQDPVGYHRLPSEPDV------------GTDTNDAT----TSLWGGDLDLLQAICTLE----FWILSFAM 248 (453)
Q Consensus 193 ~~~----~~l~~~~~~~~~~~~~~~~------------~~~~~~~~----~~~~~~~~~~~~~~~~~~----~~~~~~~~ 248 (453)
... ..+++.|+....+.++++. ++++.++. ++.++.+.+++++++++. ....+...
T Consensus 182 l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 261 (451)
T PF00083_consen 182 LLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQ 261 (451)
T ss_pred ccccccccccccccceecccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccc
Confidence 211 1123333211111100000 00000000 000011133556666643 22222222
Q ss_pred Hhhhcch-hhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHH
Q 012910 249 ACGMGSG-LATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLII 327 (453)
Q Consensus 249 ~~~~~~~-~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~ 327 (453)
.+....+ .....+.+.+.++.|.+.. -....+..+...++.++..++.||+ +||.++..+..+++++.+.+
T Consensus 262 ~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~------GRr~~~i~~~~~~~~~~~~~ 333 (451)
T PF00083_consen 262 FFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF------GRRKLLIIGLLLMAICSLIL 333 (451)
T ss_pred ccccccccccccccccccccccccccc--ccccccccccccccccccccccccc------cccccccccccccccccccc
Confidence 2222222 2344455667777777765 3334455567777888888999999 66666666666655555444
Q ss_pred H------hcc----hhHHHHHHHHHHHhhh-hhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheecc
Q 012910 328 A------SGL----PGALYAGSILVGVCYG-SQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDRE 396 (453)
Q Consensus 328 ~------~~~----~~~~~~~~~l~g~~~g-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~ 396 (453)
. .+. .....+...+....++ +..+....+..|.+|++.|+++.|+.+....+++. ++|.+...+.+..
T Consensus 334 ~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~-i~~~~~~~~~~~~ 412 (451)
T PF00083_consen 334 GIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGF-IIPFLFPYLFNNL 412 (451)
T ss_pred ccccccccccccccccccceeeeecccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence 2 122 1122222222222333 33455568889999999999999999988888885 5776777777665
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 012910 397 ASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKRFYNEVILR 445 (453)
Q Consensus 397 g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 445 (453)
+. ...+.+.++++++..+....+.+++|.+..++.++
T Consensus 413 ~~------------~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~ 449 (451)
T PF00083_consen 413 GG------------WGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQE 449 (451)
T ss_pred cc------------cccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHh
Confidence 42 45666777777777767777778888776666544
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.9e-18 Score=151.15 Aligned_cols=379 Identities=12% Similarity=0.025 Sum_probs=230.7
Q ss_pred cccHHHHHHHHHHHHh-hcCcccccccchhHHhhcCCCccchhHHHHHHHHhhhhc-chhhhhhhccCCCCCCCCcchhh
Q 012910 10 NTRWVSTVASIWIQCT-SGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANTG-TLSGVLYTYSTSDHSSHHPRQQR 87 (453)
Q Consensus 10 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~p~~g~ 87 (453)
+.+|.....+...... .+.....+.+.|.+.+..|.+..|..+++.....+...+ ..+|.++|++|
T Consensus 74 rfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~g------------ 141 (528)
T KOG0253|consen 74 RFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIG------------ 141 (528)
T ss_pred cchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhh------------
Confidence 4456655544443333 223445567778899999988888899999999999875 89999999999
Q ss_pred hhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheec
Q 012910 88 LTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMK 166 (453)
Q Consensus 88 ~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~ 166 (453)
||+.+.+..+..++..++ .+.. +|+..++++|.+.|+|.|. .|...++-.+.-| .+|+.-+=..
T Consensus 142 ------rr~~f~~T~l~t~v~~~i-----s~~s--pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~- 206 (528)
T KOG0253|consen 142 ------RRKGFNLTFLVTGVFGVI-----SGAS--PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS- 206 (528)
T ss_pred ------cchhhhhhHHHHHHHHHh-----hcCC--CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-
Confidence 999988888888777777 5555 6999999999999999998 7777777777777 6776543332
Q ss_pred ccCCCC--------cccccccccCcccchhhhhhhhhcc----cccCCCCcccCCCC-----------------------
Q 012910 167 GSDSDR--------TSETSFCEEDELTDDPHEMHAEKMH----VRQDPVGYHRLPSE----------------------- 211 (453)
Q Consensus 167 ~~~~~~--------~~~~~~~~w~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~----------------------- 211 (453)
..+.++ .......||||..........+... +++.|+-...+.++
T Consensus 207 ~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl 286 (528)
T KOG0253|consen 207 FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVL 286 (528)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCccee
Confidence 333331 1223336888876544322211111 12222110000000
Q ss_pred --------CCCCCCCCcCC-cCCCCCCccHHHHh----hhhHHHHHHHHHHhhhcchhhecc-----------------c
Q 012910 212 --------PDVGTDTNDAT-TSLWGGDLDLLQAI----CTLEFWILSFAMACGMGSGLATVN-----------------N 261 (453)
Q Consensus 212 --------~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-----------------~ 261 (453)
++|+.+..+.. +..++...+..+++ +..+ .+++..++......++..- .
T Consensus 287 ~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrktt-lllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~ 365 (528)
T KOG0253|consen 287 ESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTT-LLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRF 365 (528)
T ss_pred eeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhc
Confidence 00000000000 00011111222222 2222 2222222222222222221 1
Q ss_pred HHHhhhh---cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhHHHH
Q 012910 262 ISQIGGS---LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYA 337 (453)
Q Consensus 262 ~~~~~~~---~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~ 337 (453)
.|+..+. -..+...--.-..+.....+.|.++.+++.||+ |||..+...++++++..+++. ..+.....+
T Consensus 366 ~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverl------GRKkTMal~l~~f~iflfll~~c~~rn~~tv 439 (528)
T KOG0253|consen 366 LPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERL------GRKKTMALSLILFGIFLFLLTTCKTRNAYTV 439 (528)
T ss_pred chhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHh------cchhHHHHHHHHHHHHHHHHHHhcCcchhHH
Confidence 2222221 022222223334566778889999999999999 788889999999888887766 333333334
Q ss_pred HHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHH
Q 012910 338 GSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIM 417 (453)
Q Consensus 338 ~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~ 417 (453)
..+..-++..+.+.+.+.+..|++|+..|+++.|......-+|++ +.|+++ ...+... ..+..+.
T Consensus 440 llf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI-~~p~iA-~~~e~s~-------------sl~i~vy 504 (528)
T KOG0253|consen 440 LLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGI-FSPVIA-MRAELST-------------SLPIFVY 504 (528)
T ss_pred HHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhh-hhhHHH-HHhccce-------------eehHHHH
Confidence 445555677777888999999999999999999999999999995 788666 4433332 4456666
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 012910 418 GSATLCGSLAAFGLFLRTKR 437 (453)
Q Consensus 418 ~~~~~~~~i~~~~~~~~~~~ 437 (453)
+.+++++.+...++..++|.
T Consensus 505 ~~~~ilagIavcffPiEtkG 524 (528)
T KOG0253|consen 505 GALFILAGIAVCFFPIETKG 524 (528)
T ss_pred HHHHHHHHHHheeeeeccCC
Confidence 77777777777666666554
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.1e-17 Score=159.04 Aligned_cols=333 Identities=9% Similarity=-0.081 Sum_probs=195.0
Q ss_pred chhHHhhcCCCccchhHHHHHH-HHhhhhcchhhhhhhccCCCCCCCCcchhhhhhccCc-hHHHHHHHHHHHHHHHHHH
Q 012910 36 SPALKTTQHYDQTTLDTVSVFK-DIGANTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGP-WVVLLVGAIQCFAGYFLMW 113 (453)
Q Consensus 36 ~~~~~~~~~~s~~~~~~i~~~~-~~~~~~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~-r~~~~~~~~~~~~~~~~~~ 113 (453)
...+.+.+|++..++|.+.... .+.++..|+.|.++||..+|+ || |+.++++.+.++++..++.
T Consensus 30 ~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~--------------Grrrp~il~g~i~~~i~~~llf 95 (473)
T PRK10429 30 MYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW--------------GKFKPWILIGTLANSVVLFLLF 95 (473)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC--------------CCcchhHhhhhHHHHHHHHHHH
Confidence 3456777899999999654444 555556799999999775333 34 6667778888777766643
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhc--CCCccchhheecccCCC-----Cc--cccc---c---
Q 012910 114 ASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNF--PTYSGTAVGIMKGSDSD-----RT--SETS---F--- 178 (453)
Q Consensus 114 ~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~--p~~rg~~~g~~~~~~~~-----~~--~~~~---~--- 178 (453)
.. ........+..+++..++.+++......+-.++..|.. |++|.+..+.-..+..+ .. .+.. .
T Consensus 96 ~~-p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~ 174 (473)
T PRK10429 96 SA-HLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGD 174 (473)
T ss_pred cC-CCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 22 11111012344556666778888888877778888876 37888877763222111 01 1110 0
Q ss_pred --cccCcccchhhhhhhhhcc--cccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcc
Q 012910 179 --CEEDELTDDPHEMHAEKMH--VRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGS 254 (453)
Q Consensus 179 --~~w~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (453)
.+|+....+...+..+... ....+|+..++ +.++ ++ +++......++.+++||.++.++...++....
T Consensus 175 ~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~--~~~~--~~----~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~ 246 (473)
T PRK10429 175 RGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSD--NQVS--AE----GSHLTLKDIVALIYKNDQLSCLLGMALAYNIA 246 (473)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHcCceecCCcc--cccc--cc----ccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 1222222222222111111 11122211100 0000 00 00111122344566898888887777766655
Q ss_pred hhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH------
Q 012910 255 GLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA------ 328 (453)
Q Consensus 255 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~------ 328 (453)
........+++.+....++...+...+...++.+++.++.++++||+ ++++.+..+..+.+++.+.+.
T Consensus 247 ~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~------gkk~~~~~~~~~~~~~~~~~~~~~~~~ 320 (473)
T PRK10429 247 SNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSL------SRRILWAGASIFPVLSCGVLLLMGLAA 320 (473)
T ss_pred HHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CcHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 55444444545554433555666777777789999999999999999 555666655555444333321
Q ss_pred hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhc-------cccccchhhhhhhhhhhhhhhhhhhhhhhheeccCC
Q 012910 329 SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFG-------VLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREAS 398 (453)
Q Consensus 329 ~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~ 398 (453)
..+.+.+.+..++.|++.+...+...++++|..+ .+..|..+|......-++.. +++.+.|.+.+..|-
T Consensus 321 ~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~a-l~~~i~g~~l~~~Gy 396 (473)
T PRK10429 321 PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSA-FAAFFIGVVLGLIGY 396 (473)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCC
Confidence 2223344556677888888888888888888855 33345578888888888885 688888988887664
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-17 Score=155.86 Aligned_cols=353 Identities=12% Similarity=0.005 Sum_probs=206.5
Q ss_pred HHhhcCCCccchhHHHHHHHHhhh-hcchhhhhhhccCCCCCCCCcchhhhhhccCchHHHH--HHHHHHHHHHHHHHHH
Q 012910 39 LKTTQHYDQTTLDTVSVFKDIGAN-TGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLL--VGAIQCFAGYFLMWAS 115 (453)
Q Consensus 39 ~~~~~~~s~~~~~~i~~~~~~~~~-~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~--~~~~~~~~~~~~~~~~ 115 (453)
++++.|+|.+|+|.+.+...+..+ .+|+.|.+.||+| .||-++ ++.++...+.+.....
T Consensus 34 L~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg------------------~kK~Ll~~i~~l~~l~~pff~~v~ 95 (412)
T PF01306_consen 34 LTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLG------------------LKKHLLWFIAILLLLFGPFFIYVF 95 (412)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCT------------------TCSHHHHHHHHHHHTCHHHHHHTH
T ss_pred HccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhh------------------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455689999999977666666665 5799999999999 444333 2333333333332111
Q ss_pred HhcCCCCCCH-HHHHHHHHHHHhhhhhHhhhhhHhHhhhc---CCCccchhheecccCCCCcc---cccccccCcccchh
Q 012910 116 VVGLIPRPPV-PVMCLFMLFAAHGMTFFNTADVVTSVRNF---PTYSGTAVGIMKGSDSDRTS---ETSFCEEDELTDDP 188 (453)
Q Consensus 116 ~~~~~~~~~~-~~l~~~r~l~G~g~~~~~~~~~~~~~~~~---p~~rg~~~g~~~~~~~~~~~---~~~~~~w~~~~~~~ 188 (453)
..+.+ .|. ...+++.+..|+......+..-+++.++- .-+-|++=..-+.++.++.. -....+.+..|+..
T Consensus 96 -~pll~-~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~ 173 (412)
T PF01306_consen 96 -GPLLQ-SNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIA 173 (412)
T ss_dssp -HHHHH-TT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHH-HHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHH
Confidence 11111 122 23333444445545455555555554442 21223222222222221110 00112223444433
Q ss_pred hhhhhhhcc--cccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhh
Q 012910 189 HEMHAEKMH--VRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIG 266 (453)
Q Consensus 189 ~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (453)
.....+... +..+++..++.+..+.+ .. +++....++..+++|+|++|.+.+...........+-...+.|.
T Consensus 174 s~~~~il~lll~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~ 247 (412)
T PF01306_consen 174 SAAAIILLLLLLLLKPDVPPQAEVADAL---GA---KKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYF 247 (412)
T ss_dssp HHHHHHHHHHHHSS---SSSSS-SSTTS---SS---------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcCchhhhhhccc---cc---CCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222111111 12222211111111100 00 01111123456889999999988766665555555544455555
Q ss_pred hh----cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhHHHHHHHH
Q 012910 267 GS----LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSIL 341 (453)
Q Consensus 267 ~~----~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l 341 (453)
.+ .+.+....|.+.+..-+..++...+..++.+|+ +.|..+.++..++.+-..+.. .++++.+.+.-.+
T Consensus 248 ~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri------g~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klL 321 (412)
T PF01306_consen 248 ASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI------GAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLL 321 (412)
T ss_dssp HHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHH
T ss_pred HHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc------ChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 43 455666788888999999999999999999999 677788888888888888877 5666777778889
Q ss_pred HHHhhhhhhhhhHHHHhHhhccccccchhhhh-hhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHH
Q 012910 342 VGVCYGSQWSLMPTIASEIFGVLQMGTIFNTI-TIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSA 420 (453)
Q Consensus 342 ~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~ 420 (453)
.++-.........-++.+.+|++..++.+.+. +.+.+++..+ .+.+.|.++|+.| ++.+|++++.+
T Consensus 322 H~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i-~s~~~G~lyd~~G------------~~~tylimg~i 388 (412)
T PF01306_consen 322 HALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIII-LSPLAGYLYDRIG------------FQHTYLIMGLI 388 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHH-HHHHHHHHHHHHH------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHH-HhhhHHhhHhhcC------------cHHHHHHHHHH
Confidence 99999999999999999999998888998886 5788888875 5558999999998 89999999988
Q ss_pred HHHHHHHHHHHhhhhh
Q 012910 421 TLCGSLAAFGLFLRTK 436 (453)
Q Consensus 421 ~~~~~i~~~~~~~~~~ 436 (453)
.++..++..+..++++
T Consensus 389 v~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 389 VLPFTLISAFTLKKDK 404 (412)
T ss_dssp HHHHHHHHHHHS--SS
T ss_pred HHHHHHHheeeecCCC
Confidence 7777766666554443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.6e-17 Score=155.49 Aligned_cols=185 Identities=16% Similarity=0.145 Sum_probs=149.6
Q ss_pred cHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhh-hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCc
Q 012910 231 DLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWAR 309 (453)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r 309 (453)
.++++.|.|+....+++.++..-....+......|.+ ++|++..+.........+.+++|.+++|++.||++.|.
T Consensus 273 t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~---- 348 (477)
T PF11700_consen 273 TFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKT---- 348 (477)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch----
Confidence 4556667788888888888887777777777777776 68999999999999999999999999999999996431
Q ss_pred hhHHHHHHHHH-HHHHHHHH--------hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhh
Q 012910 310 PLFMVITLAAM-SIGHLIIA--------SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVG 380 (453)
Q Consensus 310 ~~~~~~~~~~~-~i~~~~~~--------~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 380 (453)
+.++....++. .+....+. ..+.+.+++..++.|++.|..++..-++.+|+.|+++.+.-+|+..+..-..
T Consensus 349 ~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~s 428 (477)
T PF11700_consen 349 KRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKAS 428 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 13333333332 33333332 4566778888899999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 012910 381 SYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGL 431 (453)
Q Consensus 381 ~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~ 431 (453)
++ +||.+.|.+.|.+|+ .+..+....++.+++.++...+
T Consensus 429 s~-lGPll~g~i~~~tg~-----------~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 429 SW-LGPLLFGLITDATGS-----------QRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred HH-HHHHHHHHHHHHhCC-----------chhHHHHHHHHHHHHHHHHhhc
Confidence 96 799999999999987 6999999988888888665444
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-16 Score=142.57 Aligned_cols=320 Identities=13% Similarity=0.036 Sum_probs=201.2
Q ss_pred CccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 012910 46 DQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPP 124 (453)
Q Consensus 46 s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (453)
+..-.|.+.+.+.+...+ ++.+|.++||+| ||++++++.+..++.+.+.+.+ .|
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yG------------------Rkpvll~c~~~va~s~ll~~~S-------~~ 120 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYG------------------RKPVLLACLIGVALSYLLWALS-------RN 120 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhC------------------chHHHHHHHHHHHHHHHHHHHH-------HH
Confidence 333455788888888876 599999999999 9999999999999988886655 58
Q ss_pred HHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCcccccc----------cccCcccchhhhhhh
Q 012910 125 VPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRTSETSF----------CEEDELTDDPHEMHA 193 (453)
Q Consensus 125 ~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~~~~~~----------~~w~~~~~~~~~~~~ 193 (453)
+..+++.|++.|+.-|-. ....++++|.++ |+|+++++.+...++++....+. ..-+..|..+.....
T Consensus 121 F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~ 199 (451)
T KOG2615|consen 121 FAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVF 199 (451)
T ss_pred HHHHHHHHHhhhhccCch-HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHH
Confidence 866667799999999854 467888899995 89999999998888775432221 111122222211111
Q ss_pred h------hcccccCCCCcccCCCCCCCCC---CCCcCCcCCCCC-CccHHHHhhhhHHHH-------HHHHHHhhhcchh
Q 012910 194 E------KMHVRQDPVGYHRLPSEPDVGT---DTNDATTSLWGG-DLDLLQAICTLEFWI-------LSFAMACGMGSGL 256 (453)
Q Consensus 194 ~------~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 256 (453)
+ .....+.||..+.++.. ++.. +..++.++.... .......++|++... ..+..+.+...+.
T Consensus 200 i~a~~~v~~~~~~lpETL~~rk~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s 278 (451)
T KOG2615|consen 200 ILAAGDVTFFPWFLPETLPLRKRN-DEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFS 278 (451)
T ss_pred HHHHHHHHHHHHhCCccccchhhc-ccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHH
Confidence 1 11112222221111111 1110 000000000000 000112334432211 1122222222222
Q ss_pred hecccHHHhh-hhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhH
Q 012910 257 ATVNNISQIG-GSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGA 334 (453)
Q Consensus 257 ~~~~~~~~~~-~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~ 334 (453)
.+.+....+. +.+|+++.|.|.+++..++...+.+.......||.+.. .+-.+.....++...++++. ...+..
T Consensus 279 ~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~----~~a~l~~~l~~~vP~~llls~~~~~~~ 354 (451)
T KOG2615|consen 279 GLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGN----IKAVLLFSLLLIVPAFLLLSLARTPVV 354 (451)
T ss_pred HHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccc----hhhHHHHHHHHHHHHHHHHhccccchh
Confidence 2333333332 45699999999999999999888887777777776321 33344445555555555554 455567
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccC
Q 012910 335 LYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREA 397 (453)
Q Consensus 335 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g 397 (453)
++....+..+......+....++....|+++||+..|+......++-. +||.+.|.+..+..
T Consensus 355 l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRa-iGPlv~g~i~~Ws~ 416 (451)
T KOG2615|consen 355 LYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARA-IGPLVSGVIFSWSQ 416 (451)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHH-hhhhhhheeEEEec
Confidence 788888888888888889999999999999999999999999999996 79988888888754
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.6e-17 Score=149.62 Aligned_cols=263 Identities=10% Similarity=-0.011 Sum_probs=186.9
Q ss_pred CCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCcc--ccc----------------------
Q 012910 123 PPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRTS--ETS---------------------- 177 (453)
Q Consensus 123 ~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~~--~~~---------------------- 177 (453)
.+|+.+++.-++.|.|.+...+..+.++++..| |++.+.+++.++.++++.. |..
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~ 87 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAE 87 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHH
Confidence 489999999999999999999999999999986 7889999999888887321 100
Q ss_pred ccccCcccchhhhhhhhhccc---ccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcc
Q 012910 178 FCEEDELTDDPHEMHAEKMHV---RQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGS 254 (453)
Q Consensus 178 ~~~w~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (453)
..+|++.|.....+..+...+ ...|+.++ + ++++ .. ++ +..+.++.+++|.++...+..+++.+.
T Consensus 88 ~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-~---~~~~--~~---~~---~~~~~~~~~~~~~~~l~~~~~f~yvg~ 155 (310)
T TIGR01272 88 AAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-A---DVAR--VS---SG---DTTQKTSAFQFTHLVLGALGIFVYVGA 155 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-c---cccc--cc---cc---cccchhhHHhhHHHHHHHHHHHHHHHH
Confidence 025667766553332222211 11121110 0 0000 00 00 001224577889999988888888889
Q ss_pred hhhecccHHHhhhh---cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHhcc
Q 012910 255 GLATVNNISQIGGS---LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGL 331 (453)
Q Consensus 255 ~~~~~~~~~~~~~~---~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~ 331 (453)
+.....|.+.|+++ .|+++.+++...+.+..+.++||++.+++.||+ ++++++..+..+..++.++....+
T Consensus 156 e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~------g~~~~l~~~~~l~~~~~~l~~~~~ 229 (310)
T TIGR01272 156 EVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI------SQGRYLAFNAFLAVLLSIGAALTH 229 (310)
T ss_pred HHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999974 489999999999999999999999999999999 545556666666666555444322
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchH
Q 012910 332 PGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFM 411 (453)
Q Consensus 332 ~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~ 411 (453)
.....+...+.|++.+..+|...+...+..| ++.+++.++. ....+|+. +.|++.|.+.|..+ .+
T Consensus 230 ~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~-~~~~~asai~-~~~~~Gg~-i~P~l~G~lad~~g------------~~ 294 (310)
T TIGR01272 230 GYVAMWFVLALGLFNSIMFPTIFSLALNALG-RHTSQGSGIL-CLAIVGGA-IVPLLQGSLADCLG------------IQ 294 (310)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhHHHH-HHHHhcch-HHHHHHHHHHHhcc------------ch
Confidence 2333445668899999999999998888888 4566777775 45668885 68989999999877 57
Q ss_pred HHHHHHH
Q 012910 412 LSFFIMG 418 (453)
Q Consensus 412 ~~f~~~~ 418 (453)
.++++..
T Consensus 295 ~a~~v~~ 301 (310)
T TIGR01272 295 LAFALPV 301 (310)
T ss_pred HHHHHHH
Confidence 7776443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=156.06 Aligned_cols=353 Identities=10% Similarity=-0.042 Sum_probs=218.1
Q ss_pred HHHHHHHHhhcCc-ccccccchhHHhhcCCCccchhHHHHHHHHhhhhcchhhhhhhccCCCCCCCCcchhhhhhccCch
Q 012910 17 VASIWIQCTSGSL-YTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPW 95 (453)
Q Consensus 17 ~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r 95 (453)
.+.....+..|.. .......|.+++++|+|.++++.+.+...+...+-+++|+++||++ ..|+| ||
T Consensus 29 ~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l~g~l~D~~~-i~G~r------------Rr 95 (468)
T TIGR00788 29 AIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPFAGVMSDTFP-LFGYT------------KR 95 (468)
T ss_pred HHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCcc------------ch
Confidence 3333444555554 2344667788889999999998777777777777778999999997 23333 46
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhhhhhHhhhhhHhHhhhcCCCccchhheecccCC---
Q 012910 96 VVLLVGAIQCF-AGYFLMWASVVGLIPRPPV-PVMCLFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKGSDS--- 170 (453)
Q Consensus 96 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p~~rg~~~g~~~~~~~--- 170 (453)
+.++++.++.+ ++... .+.. ++. ....+..++.+++.+....++-.+..|..+++++...+..+..++
T Consensus 96 ~~l~~~~~l~~~~~~~~-----l~~~--~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~~~~ 168 (468)
T TIGR00788 96 WYLVLSGLLGSAILYGL-----LPGK--VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASA 168 (468)
T ss_pred HHHHHHHHHHHHHHHHh-----cccc--cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHHHHH
Confidence 66666666653 33222 2222 243 344458899999999999999999999988544443334332221
Q ss_pred ----CCc----ccccccccCcccchhhhhhhhhcc-cccCCCCcccCCCCCCCCC-C--CCcCCc---CCCCCCccHHHH
Q 012910 171 ----DRT----SETSFCEEDELTDDPHEMHAEKMH-VRQDPVGYHRLPSEPDVGT-D--TNDATT---SLWGGDLDLLQA 235 (453)
Q Consensus 171 ----~~~----~~~~~~~w~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~-~--~~~~~~---~~~~~~~~~~~~ 235 (453)
++. ......+|+..|............ ....+|++....++..++. . ...... +..+...+.++.
T Consensus 169 ~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 248 (468)
T TIGR00788 169 TGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGA 248 (468)
T ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 111 111226899888776444333311 1122221100000000000 0 000000 000111234556
Q ss_pred hhhhHHHHHHHHHHh-hhcchhhecccHH-HhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHH
Q 012910 236 ICTLEFWILSFAMAC-GMGSGLATVNNIS-QIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFM 313 (453)
Q Consensus 236 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~ 313 (453)
+++|..+...+..++ ..... ......- ...+.+|+++.+.|......+++.+++..+.+++.+|+ +.+.++
T Consensus 249 l~~~~i~~~l~fifl~~~~~~-~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~------~~r~~l 321 (468)
T TIGR00788 249 IQLLEIAKPLIFIFLSYANLP-GASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF------PYRLLF 321 (468)
T ss_pred HhcHHHHHHHHHHHHHHhhcC-CCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC------CHHHHH
Confidence 778888775554444 21111 1111110 11135799999999999999999999999999888877 667777
Q ss_pred HHHHHHHHHHHHHHH-----h------cchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhh
Q 012910 314 VITLAAMSIGHLIIA-----S------GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSY 382 (453)
Q Consensus 314 ~~~~~~~~i~~~~~~-----~------~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 382 (453)
..+.++.+++.+... . ++.+......++.+++.+..+.....++.+..|+++.|+.+++.+...++|..
T Consensus 322 ~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~ 401 (468)
T TIGR00788 322 GVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSS 401 (468)
T ss_pred HHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHH
Confidence 777777776664421 0 22223445556778888888888899999999999999999999999999986
Q ss_pred hhhhhhhhhheeccC
Q 012910 383 IFSVRVVGYIYDREA 397 (453)
Q Consensus 383 i~g~~~~g~l~~~~g 397 (453)
+++.++|.+.+..|
T Consensus 402 -v~~~~gg~l~~~~g 415 (468)
T TIGR00788 402 -VSGFLGVLLMETIG 415 (468)
T ss_pred -HHHHHHHHHHHHcC
Confidence 68888999988877
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-16 Score=157.55 Aligned_cols=317 Identities=14% Similarity=-0.020 Sum_probs=205.3
Q ss_pred hhcCCCccchhHHHHHHHHhhhhc-chhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcC
Q 012910 41 TTQHYDQTTLDTVSVFKDIGANTG-TLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGL 119 (453)
Q Consensus 41 ~~~~~s~~~~~~i~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 119 (453)
+.++.+.....+..+.+.+|..++ +++|+++||+| ||++++.+.++..++.++.+++
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~G------------------Rk~~~~~~~~~~~i~~~~~a~a---- 168 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFG------------------RKPVLLVSLLLFIIFGILTAFA---- 168 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcc------------------cHHHHHHHHHHHHHHHHHHHHh----
Confidence 455556666667888889999876 89999999999 9999999999999999885554
Q ss_pred CCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhc-CCCccchhheecccCCCCc--cc---ccccccCcccchhhhhhh
Q 012910 120 IPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNF-PTYSGTAVGIMKGSDSDRT--SE---TSFCEEDELTDDPHEMHA 193 (453)
Q Consensus 120 ~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~-p~~rg~~~g~~~~~~~~~~--~~---~~~~~w~~~~~~~~~~~~ 193 (453)
+|++.+++.|+++|++.+........++.|++ |++|+.+..+....+..+. .+ ....+||+.++.......
T Consensus 169 ---~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~ 245 (521)
T KOG0255|consen 169 ---PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSG 245 (521)
T ss_pred ---CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999 5999999998322222211 11 111589999887644443
Q ss_pred hhccc----ccCCCCcccCCCCCC--------------CCCC-----C--CcCC--cCCCCCCccHHHHhhhhHHHHHHH
Q 012910 194 EKMHV----RQDPVGYHRLPSEPD--------------VGTD-----T--NDAT--TSLWGGDLDLLQAICTLEFWILSF 246 (453)
Q Consensus 194 ~~~~l----~~~~~~~~~~~~~~~--------------~~~~-----~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 246 (453)
....+ ++.++....+...++ .... . ..++ ....++...+.++++.|++....+
T Consensus 246 ~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~ 325 (521)
T KOG0255|consen 246 LFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTL 325 (521)
T ss_pred HHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHH
Confidence 32221 122211111100000 0000 0 0000 000112245677788876544444
Q ss_pred HHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHH
Q 012910 247 AMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLI 326 (453)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~ 326 (453)
...+.+.......+-++.....+|.+. .....+.+.....+....+...|++ +|+.....+..+..++++.
T Consensus 326 ~~~~~~~~~~~~y~gl~~~~~~lg~~~---~~~~~~~~~~~~p~~~~~~~~~~~~------gR~~~~~~~~~~~~~~~~~ 396 (521)
T KOG0255|consen 326 YLLFIWFVFSLVYYGLSLNVSGLGGNI---YLNFTLSGLVELPAYFRNGLLLPEF------GRRPPLFLSLFLAGIGLLL 396 (521)
T ss_pred HHHHHHHHHhHHHHhhhhhhhhcCchH---HHHHHHHHHHHhhHHHHHHHHHHHh------CcHHHHHHHHHHHHHHHHH
Confidence 444443333333333444444555543 2333334446666677778999999 7888888988888888887
Q ss_pred HHh-cc-hh--HHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhh
Q 012910 327 IAS-GL-PG--ALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYI 392 (453)
Q Consensus 327 ~~~-~~-~~--~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l 392 (453)
... .. .. ...+...+..++.+..+.....+..|++|+..|..+.+..+....+++. ++|.+.-..
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i-~ap~~~~~~ 465 (521)
T KOG0255|consen 397 FGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSI-LAPLFPLLL 465 (521)
T ss_pred HHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 662 22 22 2333344445566666777789999999999999999999999999985 677554333
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.3e-17 Score=156.66 Aligned_cols=332 Identities=13% Similarity=0.048 Sum_probs=219.3
Q ss_pred cchhHHhhcCCCccchhHHHHHH-HHhhhhcchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHHHH
Q 012910 35 YSPALKTTQHYDQTTLDTVSVFK-DIGANTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMW 113 (453)
Q Consensus 35 ~~~~~~~~~~~s~~~~~~i~~~~-~~~~~~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~ 113 (453)
+.+.+.+.+|++...++++.... .+.++..|+.|.++||..+|+|| ||+.+++|.+..+++.+++.
T Consensus 24 ~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Gr-------------rrp~~l~g~i~~~~~~~llf 90 (428)
T PF13347_consen 24 LLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGR-------------RRPWILIGAILLALSFFLLF 90 (428)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccc-------------cceEeehhhHHHHHHHHHhh
Confidence 34567778899999999654444 55555679999999976644443 45566778888888888755
Q ss_pred HH-HhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC--CCccchhheecccCCCCc----------ccccc--
Q 012910 114 AS-VVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP--TYSGTAVGIMKGSDSDRT----------SETSF-- 178 (453)
Q Consensus 114 ~~-~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p--~~rg~~~g~~~~~~~~~~----------~~~~~-- 178 (453)
.. +...........+.+..++..++......+-.++..|..+ ++|.+..+.-..+..++. .....
T Consensus 91 ~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~ 170 (428)
T PF13347_consen 91 SPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGG 170 (428)
T ss_pred ccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccC
Confidence 43 2122111133445667777788888888888888888874 688877777543322211 10001
Q ss_pred ---cccCcccchhhhhhhhhccc--ccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhc
Q 012910 179 ---CEEDELTDDPHEMHAEKMHV--RQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMG 253 (453)
Q Consensus 179 ---~~w~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (453)
.+|++...+...+..+...+ ...+| .+++ .+++ +++.......+++++||+++.+.+..++...
T Consensus 171 ~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke--~~~~-~~~~--------~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~ 239 (428)
T PF13347_consen 171 DTSNGYRWMALVLAIVGLVFFLITFFFVKE--RSVE-VTEQ--------EKKISLRDSLRSLFRNRPFRILLLAFFLQWL 239 (428)
T ss_pred ccchHHHHHHHHHHHHHHHHhhhhhheeee--cccc-cccc--------ccccccccchhhhcccchHHHHHHHHHHHHh
Confidence 13444444443333322222 12222 0000 0000 1111233467889999999999888888877
Q ss_pred chhhecccHHHhhhhc-CCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-h--
Q 012910 254 SGLATVNNISQIGGSL-GYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-S-- 329 (453)
Q Consensus 254 ~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~-- 329 (453)
.........+++.+.. |.+ ...+.......++..++.+++++++||+ ++++.+..+.++.+++.+++. .
T Consensus 240 ~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~------gk~~~~~~~~~~~~~~~~~~~~~~~ 312 (428)
T PF13347_consen 240 AFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF------GKKKVYIIGLLLAALGFLLLFFLGP 312 (428)
T ss_pred hhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc------cceeehhhhHHHHHHHHHHHHHHHh
Confidence 7766666677777754 554 5677778888999999999999999999 556667777777777666644 2
Q ss_pred cchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhcc-------ccccchhhhhhhhhhhhhhhhhhhhhhhheeccCC
Q 012910 330 GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGV-------LQMGTIFNTITIANPVGSYIFSVRVVGYIYDREAS 398 (453)
Q Consensus 330 ~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~ 398 (453)
++.+..++..++.|++.+..+....++.+|..+. ++.|..+|..+....++.. +++.+.+.+.+..|-
T Consensus 313 ~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~-la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 313 GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQG-LAGAIVGLLLALVGY 387 (428)
T ss_pred hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHH-HHHHHHHHHHHHhCc
Confidence 4667778888899999999999999999888763 3457778888888888875 577778888777664
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-15 Score=145.31 Aligned_cols=368 Identities=11% Similarity=-0.040 Sum_probs=209.3
Q ss_pred cchhHHhhcCCCccchhHHHHHHHH-hhhhcchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHH-HHHHHHHHHHH
Q 012910 35 YSPALKTTQHYDQTTLDTVSVFKDI-GANTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVG-AIQCFAGYFLM 112 (453)
Q Consensus 35 ~~~~~~~~~~~s~~~~~~i~~~~~~-~~~~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~-~~~~~~~~~~~ 112 (453)
+.+.+.+++|.+..+.+++.....+ +.+.+|+.|.++||-- -|+|||+.++++ .+...++..++
T Consensus 26 ~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~--------------sr~GRRrp~il~g~~~~~~~l~ll 91 (477)
T TIGR01301 26 LLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCT--------------SRFGRRRPFIAAGAALVAFAVILI 91 (477)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCC--------------CCCCChHHHHHHHHHHHHHHHHHH
Confidence 3445678899999999965555544 4456799999999622 122277776664 56666666665
Q ss_pred HHHHhc---CC----CCC-CH--HHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCc--cchhheecccCCCCc------
Q 012910 113 WASVVG---LI----PRP-PV--PVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYS--GTAVGIMKGSDSDRT------ 173 (453)
Q Consensus 113 ~~~~~~---~~----~~~-~~--~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~r--g~~~g~~~~~~~~~~------ 173 (453)
+++..- +. ... .. ..++++-.+..++.+...++..+++.|..| ++| +.+.++.+...+++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~ 171 (477)
T TIGR01301 92 GFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAA 171 (477)
T ss_pred HhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443100 00 000 00 222334445556888888888999999997 443 567777543333311
Q ss_pred --c-------cccc--------cccCcccchhhhhhhh--hcccccCCCCcccCCCCCC-CCCCCCcCCcCCCCCCccHH
Q 012910 174 --S-------ETSF--------CEEDELTDDPHEMHAE--KMHVRQDPVGYHRLPSEPD-VGTDTNDATTSLWGGDLDLL 233 (453)
Q Consensus 174 --~-------~~~~--------~~w~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 233 (453)
. +... .+-+..|.+-.....+ ...+...+|....++++.+ ++.++ .++.+.+..++
T Consensus 172 g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 247 (477)
T TIGR01301 172 GAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAP----PSKHGEEAFFG 247 (477)
T ss_pred HHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhccc----ccccchhhhHH
Confidence 0 1000 1222333332221111 1111222222111111100 00000 00111112334
Q ss_pred HHhhh-----hHHHHHHHHHHhhhcchhhecccHHHhhh-h-cCCCh------hhh----hHHHHHHHHHHHHHhhhhhh
Q 012910 234 QAICT-----LEFWILSFAMACGMGSGLATVNNISQIGG-S-LGYSS------FET----SSLISLWSIWNFLGRFGAGY 296 (453)
Q Consensus 234 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~g~s~------~~~----~~~~~~~~i~~~ig~~~~G~ 296 (453)
+++++ +.++.+++..++.+.+.+.+..+.+.+.. + ++-++ ++. .+....+++.+.+.+++..+
T Consensus 248 ~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~ 327 (477)
T TIGR01301 248 ELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEK 327 (477)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433 56899999999999988887777777664 3 23221 111 23344455555555556666
Q ss_pred hhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcc---------------------hhHHHHHHHHHHHhhhhhhhhhH
Q 012910 297 VSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGL---------------------PGALYAGSILVGVCYGSQWSLMP 354 (453)
Q Consensus 297 l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~---------------------~~~~~~~~~l~g~~~g~~~~~~~ 354 (453)
+.+|++ +|+.+...+.++.++++.... ..+ .+..++...+.|+..+..+..-+
T Consensus 328 l~~~~g-----~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPf 402 (477)
T TIGR01301 328 LCRGWG-----AGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPF 402 (477)
T ss_pred HHHHhc-----cchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhH
Confidence 666663 245565667666666655543 111 14456677888999999999999
Q ss_pred HHHhHhhcc--ccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHh
Q 012910 355 TIASEIFGV--LQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLF 432 (453)
Q Consensus 355 ~~~~~~~~~--~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~ 432 (453)
+++++..++ +..|..+|+.|.+..+...+ ..+..|.+.+..|+. -.+.+.+.++..+++.+..+++.
T Consensus 403 al~s~~~~~~~~~~G~~mgilN~~I~lpQii-~sl~~g~~~~~~g~~----------~~~~~~~~gv~~~~aa~~~~~~~ 471 (477)
T TIGR01301 403 ALASIRSSNLGAGQGLSMGVLNLAIVIPQII-VSLGSGPWDQLFGGG----------NLPAFVVGAVAAFVSGLLALILL 471 (477)
T ss_pred HHHHHHccccCCCCcchhhHHHHHHHHHHHH-HHHHHHHHHHHcCCC----------CeeHHHHHHHHHHHHHHHHHHhC
Confidence 999999985 45699999999998888864 455677766666542 36678888888888888877766
Q ss_pred hhhh
Q 012910 433 LRTK 436 (453)
Q Consensus 433 ~~~~ 436 (453)
++.+
T Consensus 472 ~~~~ 475 (477)
T TIGR01301 472 PRPR 475 (477)
T ss_pred CCCC
Confidence 5543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=138.65 Aligned_cols=144 Identities=51% Similarity=0.886 Sum_probs=135.5
Q ss_pred cHHHHHHHHHHHHhhcCcccccccchhHHhhcCCCccchhHHHHHHHHhhhhcchhhhhhhccCCCCCCCCcchhhhhhc
Q 012910 12 RWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANTGTLSGVLYTYSTSDHSSHHPRQQRLTRL 91 (453)
Q Consensus 12 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~~g~l~dr~g~~~~~~~p~~g~~~~~ 91 (453)
||..++++.+++.+.|..|.|+.+.|++++.+|+|++|.+.++++..+|..++++.|.+.|++|
T Consensus 1 rW~~l~a~~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G~~~G~l~d~~g---------------- 64 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFGILAGLLYDRFG---------------- 64 (250)
T ss_pred ChhhHHHHHHHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhccHHHHHHHHhcc----------------
Confidence 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcCCCccchhheecccCCC
Q 012910 92 LGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKGSDSD 171 (453)
Q Consensus 92 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p~~rg~~~g~~~~~~~~ 171 (453)
+|.++.+|.+...+|+.++++++.+....+++|.+.++.++.|.+.+..+.++.....+.||++||++.|+..+..|+
T Consensus 65 --p~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GL 142 (250)
T PF06813_consen 65 --PWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGL 142 (250)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHh
Confidence 999999999999999999999988887657899999999999999998888888888999999999999999999988
Q ss_pred Cc
Q 012910 172 RT 173 (453)
Q Consensus 172 ~~ 173 (453)
..
T Consensus 143 Sa 144 (250)
T PF06813_consen 143 SA 144 (250)
T ss_pred HH
Confidence 43
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-15 Score=137.47 Aligned_cols=358 Identities=15% Similarity=0.081 Sum_probs=222.6
Q ss_pred cccccchhHHhhcCCCccchh-H----HHHHHHHhhhhcchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHH
Q 012910 31 TFSIYSPALKTTQHYDQTTLD-T----VSVFKDIGANTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQC 105 (453)
Q Consensus 31 ~~~~~~~~~~~~~~~s~~~~~-~----i~~~~~~~~~~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~ 105 (453)
.++++......+-+.+..+.. + .+....+-++.+|.-|.++|+.|. ||+.+-....+.
T Consensus 37 ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~-----------------Rk~~~~~f~~i~ 99 (438)
T COG2270 37 IFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGP-----------------RKKFFGFFTAIG 99 (438)
T ss_pred hhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCC-----------------cchHHHHHHHHH
Confidence 344444444444344544433 2 234445555567899999999993 455555555555
Q ss_pred HHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCC-cc--------
Q 012910 106 FAGYFLMWASVVGLIPR-PPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDR-TS-------- 174 (453)
Q Consensus 106 ~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~-~~-------- 174 (453)
.+...++++. ++ ..++..++.-++..++.......-.++..+..+ ++-++..+.--...-++ ..
T Consensus 100 i~~~~~L~~i-----~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~ 174 (438)
T COG2270 100 IISTFLLWFI-----PPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLG 174 (438)
T ss_pred HHHHHHHHHh-----CCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHH
Confidence 5666664443 21 244555578888888888888777888888875 45555544432111110 00
Q ss_pred --cc---------------cccccCcccchhhhhhhhhcccccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhh
Q 012910 175 --ET---------------SFCEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAIC 237 (453)
Q Consensus 175 --~~---------------~~~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (453)
.. ....-|..+. +.+.+..+...|.-...++.+...+...+.-.+.-++...+++++.+
T Consensus 175 ~~~~~~~~~~~~l~~l~~~~~~~~ri~~~----l~A~W~li~~iPm~~~v~~~~~~~~~~~~~l~~g~k~L~~t~k~i~~ 250 (438)
T COG2270 175 FALGQQTGITIILLGLPPADGEDVRITGL----LAALWWLLFALPMILNVHDAEKISSPPPTALRNGFKELKSTFKEIRG 250 (438)
T ss_pred HhcccccceeEEeeccCccccccchhHHH----HHHHHHHHHHhHHHhcccccccccccchHHHHHHHHHHHHHHHHHhc
Confidence 00 0011111111 11111111111100000000000000000000000112234566777
Q ss_pred hhHHHHHHHHHHhhhcchhhecccHHHhhh-hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHH
Q 012910 238 TLEFWILSFAMACGMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVIT 316 (453)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~ 316 (453)
+++....+++.++..=...........+.. ++|++..+..+......+.+++|.++.|++.||++ .|.++..+
T Consensus 251 ~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg------~k~vl~~~ 324 (438)
T COG2270 251 RKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFG------SKPVLMIG 324 (438)
T ss_pred ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CceeehHH
Confidence 778888888888776666666666667776 78999999999999999999999999999999995 44555555
Q ss_pred HHHHHHH-HHHHHhcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheec
Q 012910 317 LAAMSIG-HLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDR 395 (453)
Q Consensus 317 ~~~~~i~-~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~ 395 (453)
.++..+. ...+....+...++...++|+..|..++..-++..+.+|+++.++.+|+.++.....++ +||.+.+.+.+.
T Consensus 325 lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~-~gp~lv~v~t~i 403 (438)
T COG2270 325 LVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASF-LGPFLVAVITQI 403 (438)
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHH-HHHHHHHHHHHH
Confidence 5554444 44444445556677778999999999999999999999999999999999999999996 799999999999
Q ss_pred cCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHh
Q 012910 396 EASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLF 432 (453)
Q Consensus 396 ~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~ 432 (453)
+|+ -+..+.....+.+++.++.+..+
T Consensus 404 Tg~-----------~r~g~~~i~vll~iGl~~L~~v~ 429 (438)
T COG2270 404 TGS-----------SRAGVLSIIVLLLIGLLLLLRVK 429 (438)
T ss_pred hcc-----------hhhHHHHHHHHHHhhHhhEEeec
Confidence 887 58888888888888775544433
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.8e-15 Score=143.17 Aligned_cols=328 Identities=9% Similarity=-0.047 Sum_probs=178.9
Q ss_pred hhHHhhcCCCccchhHHHHHH-HHhhhhcchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHHHHHH
Q 012910 37 PALKTTQHYDQTTLDTVSVFK-DIGANTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWAS 115 (453)
Q Consensus 37 ~~~~~~~~~s~~~~~~i~~~~-~~~~~~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~ 115 (453)
..+.+.+|++...+|++.... ..-++..|+.|.++||..+|+||| |+.++++.+..+++.+++...
T Consensus 34 ~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~-------------rp~il~g~i~~~i~~~llf~~ 100 (460)
T PRK11462 34 FFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKF-------------RPWVLFGALPFGIVCVLAYST 100 (460)
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCc-------------chhHhHHHHHHHHHHHHHHhC
Confidence 446678899999999654444 555556799999999987655543 455566777777777665433
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhc--CCCccchhheecccCCCC-------cccccc--------
Q 012910 116 VVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNF--PTYSGTAVGIMKGSDSDR-------TSETSF-------- 178 (453)
Q Consensus 116 ~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~--p~~rg~~~g~~~~~~~~~-------~~~~~~-------- 178 (453)
+ ..........+++.-++..++......+-.++..+.. ++||.+..++-..+..++ ..|...
T Consensus 101 p-~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~ 179 (460)
T PRK11462 101 P-DLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKP 179 (460)
T ss_pred C-CCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh
Confidence 1 2211112445556666778888887777777777876 478988888765443321 112111
Q ss_pred cccCcccchhhhhhhhhcccccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhe
Q 012910 179 CEEDELTDDPHEMHAEKMHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLAT 258 (453)
Q Consensus 179 ~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (453)
.+|+....+...+..+...+.....++..++ +++ +......++..++|+.++.+....++........
T Consensus 180 ~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~---~~~---------~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~ 247 (460)
T PRK11462 180 LGFQGGIAVLSVVAFMMLAFCFFTTKERVEA---PPT---------TTSMREDLRDIWQNDQWRIVGLLTIFNILAVCVR 247 (460)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcceeccCC---Ccc---------CCCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 1233222222222111111111111111100 000 0011234567788988877765555554443333
Q ss_pred cccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHH-HHHHHHh--cchhHH
Q 012910 259 VNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSI-GHLIIAS--GLPGAL 335 (453)
Q Consensus 259 ~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i-~~~~~~~--~~~~~~ 335 (453)
.....++.+...-++...+.......++++++.+++++++||++ ++.....+..+..+ ....+.. .+....
T Consensus 248 ~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~g------kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (460)
T PRK11462 248 GGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKC------KVTIFWWTNALLAVISLAMFFVPMQASITM 321 (460)
T ss_pred HhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------hHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 33333444433222334456677888899999999999999994 34443332222222 2222222 222233
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHhHhhc-------cccccchhhhhhhhhhhhhhhhhhhhhhhheeccC
Q 012910 336 YAGSILVGVCYGSQWSLMPTIASEIFG-------VLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREA 397 (453)
Q Consensus 336 ~~~~~l~g~~~g~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g 397 (453)
.+..++.|++.+...+...++.+|..+ .+..|..++......-+|.. +++.+.|.+.+..|
T Consensus 322 ~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~a-lg~~i~g~iL~~~G 389 (460)
T PRK11462 322 FVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLA-FGGALIGWMLAYGG 389 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcC
Confidence 444455677766666666666776654 23334445555566666664 46667777776554
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3e-14 Score=137.59 Aligned_cols=370 Identities=12% Similarity=0.019 Sum_probs=197.0
Q ss_pred cccccccch-hHHhhcCCCccchhHHHHHHHHhh-hhcchhhhhhhcc-CCCCCCCCcchhhhhhccCchHHHHHHHHHH
Q 012910 29 LYTFSIYSP-ALKTTQHYDQTTLDTVSVFKDIGA-NTGTLSGVLYTYS-TSDHSSHHPRQQRLTRLLGPWVVLLVGAIQC 105 (453)
Q Consensus 29 ~~~~~~~~~-~~~~~~~~s~~~~~~i~~~~~~~~-~~~~~~g~l~dr~-g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~ 105 (453)
.|.+..+.| .+.+++|++..+.+.+...+.... +..+++|+++||+ | ||+++.++.++.
T Consensus 25 ~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilG------------------rrr~iliG~il~ 86 (493)
T PRK15462 25 FYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLG------------------NRMAVMLGALLM 86 (493)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC------------------cHHHHHHHHHHH
Confidence 444433334 456779999999996655555554 4568999999999 9 999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-C--CccchhheecccCCCCc--cc-----
Q 012910 106 FAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-T--YSGTAVGIMKGSDSDRT--SE----- 175 (453)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~--~rg~~~g~~~~~~~~~~--~~----- 175 (453)
.++.++++.. . .+...+.+...+.++|.|...+...+++.|.|| + +|..+.++...+..++. .|
T Consensus 87 ~lg~lll~~~-----~-~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~ 160 (493)
T PRK15462 87 AIGHVVLGAS-----E-IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGY 160 (493)
T ss_pred HHHHHHHHHh-----h-cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHH
Confidence 9998764321 1 122333444445556667666767788899997 3 58878777755443321 11
Q ss_pred -ccccccCcccchhhhhhhh--hcccc-c-CCCCcccCCCCCCCCCCCCc----------------CCcCCCCCCcc---
Q 012910 176 -TSFCEEDELTDDPHEMHAE--KMHVR-Q-DPVGYHRLPSEPDVGTDTND----------------ATTSLWGGDLD--- 231 (453)
Q Consensus 176 -~~~~~w~~~~~~~~~~~~~--~~~l~-~-~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~--- 231 (453)
....+|++.|........+ ...+. . ...+....++++.++++... ......+....
T Consensus 161 L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (493)
T PRK15462 161 AQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYAL 240 (493)
T ss_pred HHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1126888888764321111 11111 1 11110000000000000000 00000000000
Q ss_pred --------------HHHHh---hhhHHHHHHH---HHHhhhcchhhecccHHHhhhhc------CCChhhhhHHHHHHHH
Q 012910 232 --------------LLQAI---CTLEFWILSF---AMACGMGSGLATVNNISQIGGSL------GYSSFETSSLISLWSI 285 (453)
Q Consensus 232 --------------~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~------g~s~~~~~~~~~~~~i 285 (453)
.++.. .+++.+...+ ...+.+..+.-..+.+..+.++. |++ -.+++..++..+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~ 319 (493)
T PRK15462 241 IVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAF 319 (493)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHH
Confidence 00000 0112222211 11112222222222233333321 332 246677788888
Q ss_pred HHHHHhhhhhhhhhhhhhccccCchh-HHHHHHHHHHHHHHHHH-----h-----cchhHHHHHHHHHHHhhhhhhhhhH
Q 012910 286 WNFLGRFGAGYVSDYFLHVKEWARPL-FMVITLAAMSIGHLIIA-----S-----GLPGALYAGSILVGVCYGSQWSLMP 354 (453)
Q Consensus 286 ~~~ig~~~~G~l~Dr~~~~~~~~r~~-~~~~~~~~~~i~~~~~~-----~-----~~~~~~~~~~~l~g~~~g~~~~~~~ 354 (453)
.-++..|+.+++-.|..+|++..... =...++++.+++++.+. . .+.+++....++.+++.-...|...
T Consensus 320 ~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgl 399 (493)
T PRK15462 320 AVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAM 399 (493)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHH
Confidence 88888888888877774432211111 15667777777766553 1 1334666777888999999999999
Q ss_pred HHHhHhhccccccchhhhhhhh-hhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHH
Q 012910 355 TIASEIFGVLQMGTIFNTITIA-NPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCG 424 (453)
Q Consensus 355 ~~~~~~~~~~~~g~~~g~~~~~-~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~ 424 (453)
+.++++.|++.+|..+|...+. ..+|+. ++..+.+...+...+...........|...|...+...++.
T Consensus 400 s~~~~laP~~~~g~~mg~w~l~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 469 (493)
T PRK15462 400 SQITRIEIPGVTGVLTGIYMLLSGAIANY-LAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC 469 (493)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999998764 367775 34434443322111000000001223677777777665554
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-14 Score=134.03 Aligned_cols=331 Identities=13% Similarity=0.019 Sum_probs=213.8
Q ss_pred hHHhhcCCCccchhHH-HHHHHHhhhhcchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHHHHHHH
Q 012910 38 ALKTTQHYDQTTLDTV-SVFKDIGANTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASV 116 (453)
Q Consensus 38 ~~~~~~~~s~~~~~~i-~~~~~~~~~~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~ 116 (453)
.+.+.+|++...+|.+ ...-.+-++..|+.|.+.||..+|+|||| +.++.+.+..++.+.++..++
T Consensus 38 fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfR-------------P~lL~g~ip~~i~~~l~F~~p 104 (467)
T COG2211 38 FYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFR-------------PWLLWGAIPFAIVAVLLFITP 104 (467)
T ss_pred HHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeeccccccccccc-------------HHHHHHhHHHHHHHHHHHcCC
Confidence 4667789999999954 44445566667999999999987666544 456677788888777765542
Q ss_pred hcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhc--CCCccchhheecccCCCCc-------ccccc--------c
Q 012910 117 VGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNF--PTYSGTAVGIMKGSDSDRT-------SETSF--------C 179 (453)
Q Consensus 117 ~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~--p~~rg~~~g~~~~~~~~~~-------~~~~~--------~ 179 (453)
. +....+....++--.+.+++....+.+-.++..+.- |+||.+..+.-..+..++. .|... .
T Consensus 105 ~-~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~ 183 (467)
T COG2211 105 D-FSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKAL 183 (467)
T ss_pred C-cccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchh
Confidence 1 221135556667778888999988887778888876 5789888877755443321 11111 2
Q ss_pred ccCcccchhhhhhhhhc--ccccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhh
Q 012910 180 EEDELTDDPHEMHAEKM--HVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLA 257 (453)
Q Consensus 180 ~w~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (453)
+|+..-.+...+..+.. +.....|+..+. .+.++ ..+.+...++...++|+++..+++...+.......
T Consensus 184 g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~--~~~~~-------~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i 254 (467)
T COG2211 184 GYQGTALVLGVIGVILLLFCFFNVKERVVET--QPTKT-------GVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNI 254 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccCcc--ccCcc-------cccccHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 23322222222222221 122222221111 00000 00111122344678999999988877777666655
Q ss_pred ecccHHHhhh-hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-h--cchh
Q 012910 258 TVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-S--GLPG 333 (453)
Q Consensus 258 ~~~~~~~~~~-~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~--~~~~ 333 (453)
......+|.+ .+|.++.+..........+.+++.++..++.+|+ +++++...+.++.+++.+++. . ++..
T Consensus 255 ~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~------gkk~~~~~~~~~~~i~~~~~~f~~~~~~~ 328 (467)
T COG2211 255 RGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF------GKKKLFLIGLLLLAVGYLLLYFTPAGSVV 328 (467)
T ss_pred HhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh------chHHHHHHHHHHHHHHHHHHHhhcCcchH
Confidence 5555566665 4588888888888888888888899999999999 677788888888777777755 2 2344
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHhHhhc-------cccccchhhhhhhhhhhhhhhhhhhhhhhheeccCC
Q 012910 334 ALYAGSILVGVCYGSQWSLMPTIASEIFG-------VLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREAS 398 (453)
Q Consensus 334 ~~~~~~~l~g~~~g~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~ 398 (453)
..++..++.+++.+...+..+++++|..+ .+..|..++.+....=+|.. ++..+.|++.+..|-
T Consensus 329 l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~a-la~~~~g~~L~~~Gy 399 (467)
T COG2211 329 LIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLA-LAGFIPGWILGAIGY 399 (467)
T ss_pred HHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHcCC
Confidence 55566678889999999999999888754 34456677777766666664 455567777777663
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-14 Score=134.26 Aligned_cols=175 Identities=17% Similarity=0.212 Sum_probs=161.5
Q ss_pred HHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHH
Q 012910 240 EFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAA 319 (453)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~ 319 (453)
..+.+.++.|.....++.....+|++.+|+|.|..++|...+.+..+..++.++...+.||+ +||+++.....+
T Consensus 14 ~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~------~Rr~lLl~~l~l 87 (394)
T COG2814 14 ALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL------ERRRLLLGLLAL 87 (394)
T ss_pred HHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc------chHHHHHHHHHH
Confidence 45677788888888899999999999999999999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCC
Q 012910 320 MSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREAS 398 (453)
Q Consensus 320 ~~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~ 398 (453)
++++.++.. .++...+.+..++.|+..|..++.....+.++.|+++|+++.++++.+..++.. +|.+++.++-|..|
T Consensus 88 Fi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v-~GvPLGt~ig~~~G- 165 (394)
T COG2814 88 FIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATV-LGVPLGTFLGQLFG- 165 (394)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHH-HhccHHHHHHHHhh-
Confidence 999999877 677788889999999999999999999999999999999999999999999994 79999999999998
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 012910 399 GEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFL 433 (453)
Q Consensus 399 ~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 433 (453)
||.+|+..+++.++..+..+...+
T Consensus 166 -----------WR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 166 -----------WRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999988877666555
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-13 Score=126.95 Aligned_cols=363 Identities=13% Similarity=0.013 Sum_probs=230.1
Q ss_pred hHHhhcCCCccchhHHHHHHHHhhhhcchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHh
Q 012910 38 ALKTTQHYDQTTLDTVSVFKDIGANTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVV 117 (453)
Q Consensus 38 ~~~~~~~~s~~~~~~i~~~~~~~~~~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~ 117 (453)
.+..|++++..-.+.......+.....+..|..+|+.++..|.|| -+-+..|.+++..+..+.+++..
T Consensus 5 VMIvEL~vpA~lv~~lval~~~~ap~R~~~G~~SD~~~s~~G~rR------------tPyI~~G~~~~~~g~~~ap~a~~ 72 (403)
T PF03209_consen 5 VMIVELGVPAWLVALLVALHYLVAPLRVWFGHRSDTHPSILGWRR------------TPYIWGGTLLQAGGLAIAPFALL 72 (403)
T ss_pred hHHHHhccHHHHHHHHHHHHHHHHHHHHHhccccccCcccCcCCc------------hhhhHHHHHHHHHHHHHHHHHHH
Confidence 356688888777776556666666667889999999885555444 66677888888888777766632
Q ss_pred cCCC------CCCH-H--HHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccC--CCCcc------ccccc
Q 012910 118 GLIP------RPPV-P--VMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSD--SDRTS------ETSFC 179 (453)
Q Consensus 118 ~~~~------~~~~-~--~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~--~~~~~------~~~~~ 179 (453)
-... .+.+ + .....-.+.|+|.+...++-.++++|..| ++|+++.++.-... |+... ...++
T Consensus 73 ~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~ 152 (403)
T PF03209_consen 73 LLAESGQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPF 152 (403)
T ss_pred HHcccccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 2221 0222 2 23357778899999889999999999986 89999999874322 22110 01111
Q ss_pred ccCcccchhh---hhhhhhccc-ccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcch
Q 012910 180 EEDELTDDPH---EMHAEKMHV-RQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSG 255 (453)
Q Consensus 180 ~w~~~~~~~~---~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (453)
.......+.. .+......+ .+..|.+.++..+.++ +++..-...+++...+|+....++..++...++
T Consensus 153 s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~--------~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~ 224 (403)
T PF03209_consen 153 SPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAE--------RPRPPFREAWRQVWASPQARRFFVFLFLGTLAF 224 (403)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCC--------CCCccHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 1111111111 111111111 1222211111110000 111112235567778888777777666666665
Q ss_pred hhecccHHHhhh-hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH----hc
Q 012910 256 LATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA----SG 330 (453)
Q Consensus 256 ~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~----~~ 330 (453)
+.--..+.+|-. .+|++..+...+....+.+..+|..+.|++..|-. +++.....++....+++.++. ..
T Consensus 225 ~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~-----~~~~~a~~G~~~~~~~f~lii~a~~~~ 299 (403)
T PF03209_consen 225 FMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRL-----GKKRTAALGCLLGALAFALIILAGPLG 299 (403)
T ss_pred HhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 544445556654 46999999999999999999999999999877432 344455666666666665543 34
Q ss_pred chhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccch
Q 012910 331 LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCF 410 (453)
Q Consensus 331 ~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~ 410 (453)
+.+.+....+++|++.|.......+.+.+..++++.|...|.....+.++.- ++..++|.+.|....-.+. ....+|
T Consensus 300 ~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~G-lg~~~GG~~~D~~~~~~~~--~~~~aY 376 (403)
T PF03209_consen 300 SPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARG-LGTFLGGALRDLVRALFGN--SPALAY 376 (403)
T ss_pred cchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccC--CcchHH
Confidence 5667778889999999998888888999999999999999998877777764 5666788877743211000 123458
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012910 411 MLSFFIMGSATLCGSLAA 428 (453)
Q Consensus 411 ~~~f~~~~~~~~~~~i~~ 428 (453)
..+|.+=++..++++++.
T Consensus 377 ~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 377 GVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888887777766665443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-14 Score=132.86 Aligned_cols=178 Identities=17% Similarity=0.135 Sum_probs=150.1
Q ss_pred hhHHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHH
Q 012910 238 TLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITL 317 (453)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~ 317 (453)
-+.+...++.+...+..--.+....|.+.++.|+|.+|.+.+.+.+.+...++.++.|.++||. +.|..+..++
T Consensus 28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~------npr~fm~~gL 101 (448)
T COG2271 28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS------NPRYFMAFGL 101 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC------CCceeehHHH
Confidence 3345555566666666666677778899999999999999999999999999999999999999 8888999999
Q ss_pred HHHHHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhh--hhhee
Q 012910 318 AAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVV--GYIYD 394 (453)
Q Consensus 318 ~~~~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~--g~l~~ 394 (453)
++.++..+++. .++...+.+..++.|+++|..+|.....+...+++++||+..++.|++.++|+.+ .|++. +.+.+
T Consensus 102 ilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal-~~~~~~la~~~~ 180 (448)
T COG2271 102 ILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGAL-APLVALLAFFAF 180 (448)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccch-HHHHHHHHHHHh
Confidence 99999999888 4455566677788999999999999999999999999999999999999999975 56677 77777
Q ss_pred ccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 012910 395 REASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLR 434 (453)
Q Consensus 395 ~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~ 434 (453)
+.+ |+..|++-+++.++..++.++..++
T Consensus 181 ~~~------------w~~~f~~pgiiaiival~~~~~~rd 208 (448)
T COG2271 181 HGG------------WRAAFYFPGIIAIIVALILLFLLRD 208 (448)
T ss_pred ccc------------hhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 765 9999999998888877666665543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.7e-14 Score=136.19 Aligned_cols=172 Identities=20% Similarity=0.174 Sum_probs=137.7
Q ss_pred hHHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHH
Q 012910 239 LEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLA 318 (453)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~ 318 (453)
+.++..++..++.......+...+|.+.+++|+|..+.++..+...++..+++++.|++.||+ +||+++..+.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~------g~r~~~~~~~~ 96 (434)
T PRK11663 23 HILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS------NARYFMGIGLI 96 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc------CCchhHHHHHH
Confidence 334444555555544444556678889999999999999999999999999999999999999 67778888888
Q ss_pred HHHHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccC
Q 012910 319 AMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREA 397 (453)
Q Consensus 319 ~~~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g 397 (453)
+..++.++.. .++.+.+.+..++.|++.+..++....++.|.+|+++|+++.|+.+.+..+|.. ++|.+.+.+.+..+
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~-~~~~~~~~l~~~~g 175 (434)
T PRK11663 97 ATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGA-LIPLVVGAIALHYG 175 (434)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccc
Confidence 8888777765 445555666667788888888888889999999999999999999999999996 68888999988766
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHHHHHH
Q 012910 398 SGEGNKCTGTHCFMLSFFIMGSATLCGSLAAF 429 (453)
Q Consensus 398 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~ 429 (453)
|++.|++.+++.++..+...
T Consensus 176 ------------w~~~f~~~~i~~~~~~~~~~ 195 (434)
T PRK11663 176 ------------WRYGMMIAGIIAIVVGLFLC 195 (434)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHH
Confidence 89999988776655543333
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.9e-13 Score=129.52 Aligned_cols=172 Identities=12% Similarity=0.159 Sum_probs=143.4
Q ss_pred hHHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHH
Q 012910 239 LEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLA 318 (453)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~ 318 (453)
+.++.+.+..+............+|.+.+++|.+..+.++..+...++..+++++.|++.||+ +||+++..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~------g~r~~~~~~~~ 76 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY------SLKHILLFLVA 76 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC------ccHHHHHHHHH
Confidence 345666666666666666677788899899999999999999999999999999999999999 77888888888
Q ss_pred HHHHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccC
Q 012910 319 AMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREA 397 (453)
Q Consensus 319 ~~~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g 397 (453)
+.+++.++.. .++.+.+++..++.|++.+...+.....+.|.+++++++++.+....+..++.. ++|++.+.+.+..+
T Consensus 77 ~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~g~~l~~~l~~~~g 155 (382)
T PRK10091 77 LCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANL-LGIPLGTYLSQEFS 155 (382)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHH-HhccHHHHHhhhcc
Confidence 8888877766 556677778889999999988888888899999988999999999888889985 68888898888766
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHHHHHH
Q 012910 398 SGEGNKCTGTHCFMLSFFIMGSATLCGSLAAF 429 (453)
Q Consensus 398 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~ 429 (453)
|++.|.+.+++.++..+...
T Consensus 156 ------------wr~~f~~~~~~~~~~~~~~~ 175 (382)
T PRK10091 156 ------------WRYTFLLIAVFNIAVLASIY 175 (382)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHH
Confidence 89999998887666654443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.3e-13 Score=129.51 Aligned_cols=180 Identities=13% Similarity=0.091 Sum_probs=138.5
Q ss_pred HHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHH
Q 012910 241 FWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAM 320 (453)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~ 320 (453)
+...++.+++............|.+.+++|++..+.++..+.+.++..++++..|+++||+ +||+++..+.++.
T Consensus 10 ~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~------G~r~~~~~~~~~~ 83 (412)
T TIGR02332 10 IIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII------GARRWIAGIMVLW 83 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh------ChHHHHHHHHHHH
Confidence 3444444455444444555556766788999999999999999999999999999999999 7777888888888
Q ss_pred HHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCC
Q 012910 321 SIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASG 399 (453)
Q Consensus 321 ~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~ 399 (453)
.++.++.. .++.+.+++..++.|++.+...+....++.|.+|+++|+++.|+.+....+|.. +++++.+.+.+..+.
T Consensus 84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~~- 161 (412)
T TIGR02332 84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMA-LGLILSGYILALDGL- 161 (412)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCC-
Confidence 87777766 456667788889999999998888888999999999999999999999999985 688888887653110
Q ss_pred CCCccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 012910 400 EGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFL 433 (453)
Q Consensus 400 ~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 433 (453)
.+..+|++.|++.++..++..++..+..+
T Consensus 162 -----~~~~gwr~~f~~~~~~~l~~~~~~~~~~~ 190 (412)
T TIGR02332 162 -----MALKGWQWLFLLEGFPSVILGVMTWFWLD 190 (412)
T ss_pred -----CCccchhHHHHHHHHHHHHHHHHHhhccC
Confidence 00112999999987777665544444433
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3e-13 Score=129.80 Aligned_cols=172 Identities=11% Similarity=0.038 Sum_probs=134.9
Q ss_pred HHHHHHHHHHhhhcchhhecccHHHhhh-hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHH
Q 012910 240 EFWILSFAMACGMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLA 318 (453)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~ 318 (453)
+++.+.+..++..........+++.+++ ++|+|+.+.++..+...+...++++..|+++||+ +||+++..+.+
T Consensus 8 ~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~------g~k~~~~~~~~ 81 (395)
T PRK10054 8 STSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF------DKKRYMLLAIT 81 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------CcchhHHHHHH
Confidence 4667777777777777777778888885 5799999999999999999999999999999999 66677777777
Q ss_pred HHHHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccC
Q 012910 319 AMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREA 397 (453)
Q Consensus 319 ~~~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g 397 (453)
+..++..++. .++.+...+...+.+.+.+...+....+..|.+|+++|+++.|+.+...++|.. ++|++.+.+.+ .+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~-igp~l~~~l~~-~g 159 (395)
T PRK10054 82 AFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWT-VGPPLGTLLVM-QS 159 (395)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-hc
Confidence 7777666655 344444444455666666666777888899999999999999999999999985 79989998875 34
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 012910 398 SGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGL 431 (453)
Q Consensus 398 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~ 431 (453)
|+..|++.+++.+++.++..+.
T Consensus 160 ------------~~~~f~~~~~~~~i~~i~~~~~ 181 (395)
T PRK10054 160 ------------INLPFWLAAICSAFPLVFIQIW 181 (395)
T ss_pred ------------cCcHHHHHHHHHHHHHHHHHHH
Confidence 7889998887777765544443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.7e-13 Score=129.04 Aligned_cols=163 Identities=13% Similarity=0.111 Sum_probs=134.7
Q ss_pred hcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hc
Q 012910 252 MGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SG 330 (453)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~ 330 (453)
..........+|.+.+++|.|+.+.++..+...++..++.++.|+++||+ +||+.+..+.++..++.++.. .+
T Consensus 18 ~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~------g~r~~~~~~~~~~~~~~~~~~~~~ 91 (385)
T TIGR00710 18 PLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY------GRRPVLLLGLFIFALSSLGLALSN 91 (385)
T ss_pred HHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc------CChHHHHHHHHHHHHHHHHHHHHc
Confidence 33444555667888889999999999999999999999999999999999 677778888877777777665 45
Q ss_pred chhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccch
Q 012910 331 LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCF 410 (453)
Q Consensus 331 ~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~ 410 (453)
+.+.+.+..++.|++.+...+....++.|.+|+++|+++.|+.+....+|.. ++|.+.+.+.+..+ |
T Consensus 92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~g~~~~~~l~~~~~------------~ 158 (385)
T TIGR00710 92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPA-VAPLLGGYILVWLS------------W 158 (385)
T ss_pred cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcC------------H
Confidence 5566777788899999998999999999999999999999999999999985 68989998888766 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 012910 411 MLSFFIMGSATLCGSLAAFGLFL 433 (453)
Q Consensus 411 ~~~f~~~~~~~~~~~i~~~~~~~ 433 (453)
+..+++.+++.++..+...+..+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~ 181 (385)
T TIGR00710 159 HAIFAFLSLAGILLSALIFFILP 181 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 99998888777776655544433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.6e-13 Score=127.50 Aligned_cols=171 Identities=12% Similarity=0.124 Sum_probs=136.8
Q ss_pred HHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHH
Q 012910 241 FWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAM 320 (453)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~ 320 (453)
.+.+.+..++...........+|.+.+++|.|+.+.++..+.+.++..++.+..|++.||+ +||+++..+..+.
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~------g~r~~~~~~~~~~ 84 (390)
T PRK03545 11 VVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV------ERRKLLIGLFVLF 84 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------ChHHHHHHHHHHH
Confidence 3444444433322223333457888889999999999999999999999999999999999 7788888888888
Q ss_pred HHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCC
Q 012910 321 SIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASG 399 (453)
Q Consensus 321 ~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~ 399 (453)
.++.+... .++.+.+++..++.|++.+...+....++.|.+|+|+|+++.|+...+..+|.. ++|++.+.+.+..+
T Consensus 85 ~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~-ig~~l~~~l~~~~g-- 161 (390)
T PRK03545 85 IASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMV-LGLPLGRVIGQYLG-- 161 (390)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHH-HHhhHHHHHHHHhc--
Confidence 88777665 566667777778889888888888889999999999999999999999999985 78988998888766
Q ss_pred CCCccccccchHHHHHHHHHHHHHHHHHHHH
Q 012910 400 EGNKCTGTHCFMLSFFIMGSATLCGSLAAFG 430 (453)
Q Consensus 400 ~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~ 430 (453)
|++.|++.+++.++..+....
T Consensus 162 ----------w~~~f~~~~~~~~l~~~~~~~ 182 (390)
T PRK03545 162 ----------WRTTFLAIGGGALITLLLLIK 182 (390)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHH
Confidence 899999988877766544443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.3e-13 Score=132.29 Aligned_cols=172 Identities=16% Similarity=0.195 Sum_probs=141.9
Q ss_pred HHHHHHHHHHhhhcchhhecccHHHhhhh---cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhh-hhhccccCchhHHHH
Q 012910 240 EFWILSFAMACGMGSGLATVNNISQIGGS---LGYSSFETSSLISLWSIWNFLGRFGAGYVSDY-FLHVKEWARPLFMVI 315 (453)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr-~~~~~~~~r~~~~~~ 315 (453)
.++.+++..++.....+....++|.|+++ +|++..+++...+.+.+...++++++|+++|| + +||+++..
T Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~------G~~~~l~~ 84 (475)
T TIGR00924 11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVW------GTKKTMVL 84 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhc------chHHHHHH
Confidence 45566666677677777788889999864 79999999999999999999999999999999 7 77888888
Q ss_pred HHHHHHHHHHHHHh-cchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhcccc---ccchhhhhhhhhhhhhhhhhhhhhhh
Q 012910 316 TLAAMSIGHLIIAS-GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQ---MGTIFNTITIANPVGSYIFSVRVVGY 391 (453)
Q Consensus 316 ~~~~~~i~~~~~~~-~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~---~g~~~g~~~~~~~~g~~i~g~~~~g~ 391 (453)
+.++.+++.+++.. ++.+.+.+...+.|++.|...+...++++|.+|+++ |+++.++.+.+.++|.. +||.+.+.
T Consensus 85 ~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~-ig~~l~g~ 163 (475)
T TIGR00924 85 GGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSF-ISPLLAGV 163 (475)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHH-HHHHHHHH
Confidence 88888888887764 344556667778899999888999999999998764 88899999999999996 79999999
Q ss_pred heeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHH
Q 012910 392 IYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFG 430 (453)
Q Consensus 392 l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~ 430 (453)
+.++.+ |+..|.+.++..+++.+....
T Consensus 164 l~~~~g------------~~~~f~~~~~~~~~~~l~~~~ 190 (475)
T TIGR00924 164 IAENYG------------YHVGFNLAAVGMVIGLLTFFA 190 (475)
T ss_pred HHHhcC------------hHHHHHHHHHHHHHHHHHHHH
Confidence 998776 899999887666666544433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.6e-13 Score=126.59 Aligned_cols=153 Identities=9% Similarity=0.137 Sum_probs=131.2
Q ss_pred chhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcch
Q 012910 254 SGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLP 332 (453)
Q Consensus 254 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~ 332 (453)
..+.....+|.+.++.|.++++.+...+...++..+++++.|+++||+ +||+.+..+.++..++.++.. .++.
T Consensus 35 ~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~------grr~~~~~~~~~~~~~~~~~~~~~~~ 108 (394)
T PRK10213 35 VEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT------DRRYVVILFAVLLTLSCLLVSFANSF 108 (394)
T ss_pred HHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc------CcHHHHHHHHHHHHHHHHHHHHHChH
Confidence 333444567888899999999999999999999999999999999999 778888888888888777665 5566
Q ss_pred hHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHH
Q 012910 333 GALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFML 412 (453)
Q Consensus 333 ~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~ 412 (453)
+.+++..++.|++.+...+....++.|.+|+++++++.++...+.++|.. ++|++.+.+.+..+ |+.
T Consensus 109 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~-ig~~l~~~l~~~~g------------w~~ 175 (394)
T PRK10213 109 SLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALV-IAAPLGSFLGELIG------------WRN 175 (394)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcC------------HHH
Confidence 77888889999999999999999999999999999999999999999985 79999999998776 899
Q ss_pred HHHHHHHHHHHHH
Q 012910 413 SFFIMGSATLCGS 425 (453)
Q Consensus 413 ~f~~~~~~~~~~~ 425 (453)
.|++.+++.++..
T Consensus 176 ~f~~~~~l~~~~~ 188 (394)
T PRK10213 176 VFNAAAVMGVLCI 188 (394)
T ss_pred HHHHHHHHHHHHH
Confidence 9998876665544
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.4e-13 Score=131.51 Aligned_cols=174 Identities=17% Similarity=0.237 Sum_probs=144.3
Q ss_pred hHHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHH
Q 012910 239 LEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLA 318 (453)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~ 318 (453)
+.+|.+++..++.......+..++|.+.+++|.++.+.++..+.+.++..++.++.|+++||+ +||+++..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~------g~r~~~~~~~~ 83 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV------GVRNIFFTAIV 83 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------chHHHHHHHHH
Confidence 456777777777777777777889999999999999999999999999999999999999999 66677777766
Q ss_pred HHHHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccC
Q 012910 319 AMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREA 397 (453)
Q Consensus 319 ~~~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g 397 (453)
+..++.+... .++.+.+++..++.|++.+...+.....+.|.+|+++++++.|+.+....+|.. ++|.+.|.+.+..+
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~g~~~~g~l~~~~g 162 (471)
T PRK10504 84 LFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPL-LGPALGGLLVEYAS 162 (471)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHhhcc
Confidence 6666665544 445556677788999999999999999999999999999999999999999985 79999999998776
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 012910 398 SGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGL 431 (453)
Q Consensus 398 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~ 431 (453)
|++.|.+...+..++.+.....
T Consensus 163 ------------w~~~f~~~~~~~~l~~~~~~~~ 184 (471)
T PRK10504 163 ------------WHWIFLINIPVGIIGAIATLML 184 (471)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8999998887777666555444
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.1e-13 Score=129.63 Aligned_cols=170 Identities=9% Similarity=-0.055 Sum_probs=136.4
Q ss_pred HHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHH
Q 012910 243 ILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSI 322 (453)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i 322 (453)
.++...++...........+|.+..+.+.++.+.++..+...++..++.++.|+++||+ +||+++..+.++..+
T Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~------g~r~~~~~~~~~~~~ 76 (365)
T TIGR00900 3 LLFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRY------DRKKVMIGADLIRAV 76 (365)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh------chhHHHHHHHHHHHH
Confidence 34455555555555556667888889999999999999999999999999999999999 677777777776665
Q ss_pred HHHHHH-hc-----chhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheecc
Q 012910 323 GHLIIA-SG-----LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDRE 396 (453)
Q Consensus 323 ~~~~~~-~~-----~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~ 396 (453)
+..+.. .. +.+.+++..++.|++.+...+...+++.|.+|+++|++..|+.+....+|.. ++|.+.+.+.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~g~~l~~~l~~~~ 155 (365)
T TIGR00900 77 LVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYI-VGPGIGGLMYATL 155 (365)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 555443 22 5566777888889999999999999999999999999999999999999995 7999999998877
Q ss_pred CCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 012910 397 ASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGL 431 (453)
Q Consensus 397 g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~ 431 (453)
+ |+..|++.++..+++.+.....
T Consensus 156 g------------~~~~~~~~~~~~~~~~~~~~~~ 178 (365)
T TIGR00900 156 G------------IKWAIWVDAVGFAISALLIVSV 178 (365)
T ss_pred h------------HHHHHHHHHHHHHHHHHHHHhc
Confidence 6 8999988877666665444443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.5e-13 Score=128.35 Aligned_cols=167 Identities=19% Similarity=0.212 Sum_probs=136.7
Q ss_pred HHHhhhcchhhecccHH-HhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHH
Q 012910 247 AMACGMGSGLATVNNIS-QIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHL 325 (453)
Q Consensus 247 ~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~ 325 (453)
..++...........+| .+.+++|.|+.+.++..+...++..++.++.|+++||+ +||+++..+.++..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~------g~r~~l~~~~~~~~~~~~ 77 (352)
T PF07690_consen 4 AFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF------GRRRVLIIGLLLFALGSL 77 (352)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCeeeEeehhhhhhhHHH
Confidence 34444444444555667 66678899999999999999999999999999999999 677788888888888844
Q ss_pred HHHh-cchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCcc
Q 012910 326 IIAS-GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKC 404 (453)
Q Consensus 326 ~~~~-~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~ 404 (453)
+... ++.+.+.+..++.|++.+...+....++.|.+|+++|+++.++.+....+|.. ++|.+.+.+.+..+
T Consensus 78 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~-~g~~l~~~l~~~~~------- 149 (352)
T PF07690_consen 78 LLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSI-LGPLLGGFLISYFG------- 149 (352)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHH-HHHHHHHHCCCHCH-------
T ss_pred HhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhh-cccchhhhhhhccc-------
Confidence 4432 55567778889999999999999999999999999999999999999999995 79999999997766
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHh
Q 012910 405 TGTHCFMLSFFIMGSATLCGSLAAFGLF 432 (453)
Q Consensus 405 ~~~~~~~~~f~~~~~~~~~~~i~~~~~~ 432 (453)
|+..|++.+++.++..++.....
T Consensus 150 -----~~~~~~~~~~~~~~~~il~~~~~ 172 (352)
T PF07690_consen 150 -----WRWAFLISAILSLIAAILFILFL 172 (352)
T ss_dssp -----HCCHHHHHHHHHHHHHHHHHCCC
T ss_pred -----cccccccccchhhhhhhhHhhhh
Confidence 89999999998888876433333
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-12 Score=125.45 Aligned_cols=168 Identities=17% Similarity=0.213 Sum_probs=132.8
Q ss_pred HHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHH
Q 012910 241 FWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAM 320 (453)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~ 320 (453)
+...++..+.............|.+.+++|.++.+.++..+...++..++.++.|+++||+ +||+++..+.++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~------g~r~~~~~~~~~~ 87 (405)
T TIGR00891 14 FSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY------GRRLPMVTSIVLF 87 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHH
Confidence 3444455555555555555566777788999999999999999999999999999999999 6777777777777
Q ss_pred HHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCC
Q 012910 321 SIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASG 399 (453)
Q Consensus 321 ~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~ 399 (453)
+++.++.. .++.+.+++..++.|++.+...+....++.|.+|+++|+++.++.+....+|.. +++.+.+.+.+..+..
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~l~~~l~~~~~~~ 166 (405)
T TIGR00891 88 SAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAV-VAAQVYSLVVPVWGDG 166 (405)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCcc
Confidence 77776655 456667777888999999999999999999999999999999999999999985 6888888887765421
Q ss_pred CCCccccccchHHHHHHHHHHHHHHH
Q 012910 400 EGNKCTGTHCFMLSFFIMGSATLCGS 425 (453)
Q Consensus 400 ~~~~~~~~~~~~~~f~~~~~~~~~~~ 425 (453)
|+..|++.++..++..
T Consensus 167 ----------w~~~f~~~~~~~~~~~ 182 (405)
T TIGR00891 167 ----------WRALFFISILPIIFAL 182 (405)
T ss_pred ----------HHHHHHHHHHHHHHHH
Confidence 8888877655444443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2e-12 Score=124.88 Aligned_cols=165 Identities=15% Similarity=0.116 Sum_probs=129.8
Q ss_pred HHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHH
Q 012910 247 AMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLI 326 (453)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~ 326 (453)
..++............|.+.+++|.|+.+.++..+...++..++.++.|+++||+ +||+++..+..+..++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~------g~r~~~~~~~~~~~~~~~~ 96 (406)
T PRK11551 23 VALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI------GRKRILIVSVALFGLFSLA 96 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCchhHHHHHHHHHHHHHH
Confidence 3333333333444556778889999999999999999999999999999999999 6777777777777666655
Q ss_pred HH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccc
Q 012910 327 IA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCT 405 (453)
Q Consensus 327 ~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~ 405 (453)
.. .++.+.+.+..++.|++.+...+....++.|.+|+++|+++.++.+....+|.. +++.+.+.+.+..+
T Consensus 97 ~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~-------- 167 (406)
T PRK11551 97 TAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGA-LASVIGVLAAGDAA-------- 167 (406)
T ss_pred HHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHccccC--------
Confidence 54 456666777888899999988888999999999999999999999999999986 68877777777655
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHH
Q 012910 406 GTHCFMLSFFIMGSATLCGSLAAFG 430 (453)
Q Consensus 406 ~~~~~~~~f~~~~~~~~~~~i~~~~ 430 (453)
|+..|++.+++.++..++...
T Consensus 168 ----~~~~~~~~~~~~~~~~~~~~~ 188 (406)
T PRK11551 168 ----WRHIFYVGGVGPLLLVPLLMR 188 (406)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHH
Confidence 899998877665555544433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-12 Score=126.02 Aligned_cols=156 Identities=19% Similarity=0.156 Sum_probs=127.4
Q ss_pred hhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhH
Q 012910 256 LATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGA 334 (453)
Q Consensus 256 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~ 334 (453)
.......|.+.+++|.++.+.++..+...++..++.++.|+++||+ +||+.+..+.++..++.++.. .++.+.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (398)
T TIGR00895 34 AAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI------GRKRVLLWSILLFSVFTLLCALATNVTQ 107 (398)
T ss_pred HHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh------hhHHHHHHHHHHHHHHHHHHHHccchHH
Confidence 3444567778888999999999999999999999999999999999 667777777777777766655 445556
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHH
Q 012910 335 LYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSF 414 (453)
Q Consensus 335 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f 414 (453)
+.+..++.|++.+...+....++.|.+|+++|+++.++.+....+|.. ++|.+.+.+.+..+ |+..+
T Consensus 108 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~g------------~~~~~ 174 (398)
T TIGR00895 108 LLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAA-VGGFLAGWLIPVFG------------WRSLF 174 (398)
T ss_pred HHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHH-HHHHHHHHHhhccc------------ceeeh
Confidence 677778899999999999999999999999999999999999999985 68888999988766 78888
Q ss_pred HHHHHHHHHHHHHHHH
Q 012910 415 FIMGSATLCGSLAAFG 430 (453)
Q Consensus 415 ~~~~~~~~~~~i~~~~ 430 (453)
++.+++.++..++...
T Consensus 175 ~~~~~~~~~~~~~~~~ 190 (398)
T TIGR00895 175 YVGGIAPLLLLLLLMR 190 (398)
T ss_pred hhhhhHHHHHHHHHHH
Confidence 8876555555444433
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.4e-13 Score=128.76 Aligned_cols=157 Identities=17% Similarity=0.218 Sum_probs=130.0
Q ss_pred hecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhHH
Q 012910 257 ATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGAL 335 (453)
Q Consensus 257 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~ 335 (453)
.+....|.+.+++|.++.+.++..+...++..++.++.|+++||+ +||+.+..+.++..++..+.. .++.+.+
T Consensus 12 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~------g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (399)
T TIGR00893 12 NLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF------GARKTLAVFIVIWGVFTGLQAFAGAYVSL 85 (399)
T ss_pred hhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc------CcceeeHHHHHHHHHHHHHHHHHcCHHHH
Confidence 344456777778899999999999999999999999999999999 666677777777776666655 4566677
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHH
Q 012910 336 YAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFF 415 (453)
Q Consensus 336 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~ 415 (453)
.+..++.|++.+...+....++.|.+|+++|++..++.+....+|.. ++|.+.+.+.+..+ |++.|+
T Consensus 86 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~------------~~~~~~ 152 (399)
T TIGR00893 86 YILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGI-IGGPLVGWILIHFS------------WQWAFI 152 (399)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHH-HHHHHHHHHHHhCC------------chHHHH
Confidence 78889999999999999999999999999999999999999999995 68888998888766 899998
Q ss_pred HHHHHHHHHHHHHHHHh
Q 012910 416 IMGSATLCGSLAAFGLF 432 (453)
Q Consensus 416 ~~~~~~~~~~i~~~~~~ 432 (453)
+.+++.++..+......
T Consensus 153 ~~~~~~~~~~~~~~~~~ 169 (399)
T TIGR00893 153 IEGVLGIIWGVLWLKFI 169 (399)
T ss_pred HHHHHHHHHHHHhhhee
Confidence 88877766655544433
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.1e-12 Score=127.29 Aligned_cols=179 Identities=15% Similarity=0.160 Sum_probs=137.9
Q ss_pred HHHhhhhH-HHHHHHHHHhhhcchhhecccHHHhh-hhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhh-hhhccccCc
Q 012910 233 LQAICTLE-FWILSFAMACGMGSGLATVNNISQIG-GSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDY-FLHVKEWAR 309 (453)
Q Consensus 233 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr-~~~~~~~~r 309 (453)
.+.+++|+ ++..+...++.....+....+++.++ +++|+++.+++...+.+........+++|+++|| + +|
T Consensus 14 ~~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~------G~ 87 (500)
T PRK09584 14 LNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVL------GT 87 (500)
T ss_pred hhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------ch
Confidence 34556764 78888788888777778888888888 4689999998888877776666666789999999 6 66
Q ss_pred hhHHHHHHHHHHHHHHHHHhc--chhHHHHHHHHHHHhhhhhhhhhHHHHhHhhcccc--ccchhhhhhhhhhhhhhhhh
Q 012910 310 PLFMVITLAAMSIGHLIIASG--LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQ--MGTIFNTITIANPVGSYIFS 385 (453)
Q Consensus 310 ~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~g~~i~g 385 (453)
|+.+..+.++..++..++... ....+++...+.|++.|...+...+++.|.+|+++ +..+.++.+.+.++|+. ++
T Consensus 88 r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~-~g 166 (500)
T PRK09584 88 KRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSF-FS 166 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHH-HH
Confidence 777888888888777766532 23344556677888888888888899999998654 44578888899999995 79
Q ss_pred hhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHH
Q 012910 386 VRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFG 430 (453)
Q Consensus 386 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~ 430 (453)
|.+.|++.|..| |++.|.+.++...++.+..+.
T Consensus 167 p~i~g~l~~~~g------------~~~~F~i~~i~~~i~~i~~~~ 199 (500)
T PRK09584 167 MLATPWLAAKYG------------WSVAFALSVVGMLITVVNFAF 199 (500)
T ss_pred HHHHHHHHHhhC------------HHHHHHHHHHHHHHHHHHHHH
Confidence 999999998876 899999887666665544433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.9e-13 Score=130.52 Aligned_cols=172 Identities=16% Similarity=0.174 Sum_probs=141.3
Q ss_pred HHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHH
Q 012910 243 ILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSI 322 (453)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i 322 (453)
.+++..++...........+|.+.+++|.+..+.++..+.+.++..++.++.|+++||+ +||+++..+.++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~------g~r~~~~~~~~~~~~ 79 (485)
T TIGR00711 6 VLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF------GTRRLFLISTFAFTL 79 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh------CcHHHHHHHHHHHHH
Confidence 33444444444444555668888899999999999999999999999999999999999 778888888888888
Q ss_pred HHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCC
Q 012910 323 GHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEG 401 (453)
Q Consensus 323 ~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~ 401 (453)
+.++.. .++...+.+..++.|++.+...+....++.|.+|+++|+++.++......+|.. ++|.+.+.+.++.+
T Consensus 80 ~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~~~~~---- 154 (485)
T TIGR00711 80 GSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPA-LGPTLGGWIIENYH---- 154 (485)
T ss_pred HHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhh-hhhccHhHhccCcC----
Confidence 877766 455667778888999999999999999999999999999999999999999995 79999999998776
Q ss_pred CccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 012910 402 NKCTGTHCFMLSFFIMGSATLCGSLAAFGLFL 433 (453)
Q Consensus 402 ~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 433 (453)
|++.|++.+.+.++..++..+..+
T Consensus 155 --------w~~~f~~~~~~~~~~~~~~~~~~~ 178 (485)
T TIGR00711 155 --------WRWIFLINVPIGIIVVVVAFFILP 178 (485)
T ss_pred --------ceehhhhhhHHHHHHHHHHHHHcC
Confidence 899999888777666655554443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-12 Score=124.19 Aligned_cols=168 Identities=13% Similarity=0.079 Sum_probs=133.8
Q ss_pred HHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHH
Q 012910 247 AMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLI 326 (453)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~ 326 (453)
..+............+|.+.+++|.|+.+.+...+.+.++..++.++.|+++||+ +||+.+..+.++..++..+
T Consensus 11 ~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~------g~r~~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 11 LVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS------GRKPVAIPGAALFIIASLL 84 (392)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh------CChHHHHHHHHHHHHHHHH
Confidence 3333444444555678888899999999999999999999999999999999999 6777778887777777776
Q ss_pred HH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccc
Q 012910 327 IA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCT 405 (453)
Q Consensus 327 ~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~ 405 (453)
.. .++.+.+.+..++.|++.+...+....++.|.+|+++|+++.++.+....++.. ++|.+.+.+.+..+
T Consensus 85 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~-~~~~i~~~l~~~~g-------- 155 (392)
T PRK10473 85 CSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPV-LAPVLGHLIMLKFP-------- 155 (392)
T ss_pred HHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcC--------
Confidence 65 445556666778889888888888889999999999999999999988888885 68888888777655
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhh
Q 012910 406 GTHCFMLSFFIMGSATLCGSLAAFGLFL 433 (453)
Q Consensus 406 ~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 433 (453)
|+..|++.+++.++..++.....+
T Consensus 156 ----~~~~~~~~~~~~~i~~~~~~~~~~ 179 (392)
T PRK10473 156 ----WQSLFYTMAAMGILVLLLSLFILK 179 (392)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHcC
Confidence 899999888777776655544433
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=127.11 Aligned_cols=177 Identities=17% Similarity=0.112 Sum_probs=127.0
Q ss_pred hhHHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHH
Q 012910 238 TLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITL 317 (453)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~ 317 (453)
++.++...+...........+....|.+ ++.|.|+.+.++..+...++..++.++.|+++||+ +||+++..+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~------g~~~~~~~~~ 98 (438)
T TIGR00712 26 WQVFLGIFFGYAAYYLVRKNFALAMPYL-VEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRS------NPRVFLPAGL 98 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccHHhhhHHH-HHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc------CCceehHHHH
Confidence 3344444444444433333344445544 45699999999999999999999999999999999 5666677777
Q ss_pred HHHHHHHHHHHh-----cchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhh
Q 012910 318 AAMSIGHLIIAS-----GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYI 392 (453)
Q Consensus 318 ~~~~i~~~~~~~-----~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l 392 (453)
++..++.++... .+...+.+..++.|++.+..++.....+.|.+|+++|+++.|+.+....+++. ++|++.+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~-~~~~l~~~~ 177 (438)
T TIGR00712 99 ILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGG-IPPLLVLLG 177 (438)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhH-HHHHHHHHH
Confidence 777766665442 22334455667788888888888888899999999999999999999999886 566666655
Q ss_pred eeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 012910 393 YDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFL 433 (453)
Q Consensus 393 ~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 433 (453)
.+...+ |+..|++.+++.++..+..++..+
T Consensus 178 ~~~~~~-----------w~~~f~~~~~~~~i~~~~~~~~~~ 207 (438)
T TIGR00712 178 MAWFND-----------WHAALYFPAICAIIVALFAFAMMR 207 (438)
T ss_pred HHHhhh-----------hHHHHHHHHHHHHHHHHHHHHhcc
Confidence 443222 899999988887776655544443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.6e-12 Score=123.20 Aligned_cols=175 Identities=12% Similarity=0.063 Sum_probs=134.8
Q ss_pred hHHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhh-----hhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHH
Q 012910 239 LEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFE-----TSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFM 313 (453)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-----~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~ 313 (453)
+++..+++..++...........+|.+.+++|.+..+ .+...++..+...++.++.|+++||+ +||+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~------g~r~~~ 87 (408)
T PRK09874 14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK------GRKIML 87 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------CcHHHH
Confidence 3555666666666666666677789999999888654 37888899999999999999999999 667777
Q ss_pred HHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhh
Q 012910 314 VITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYI 392 (453)
Q Consensus 314 ~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l 392 (453)
..+.++..++..+.. .++.+.+++..++.|++.+ ..+.....+.+.+|+++|+++.|+.+....+|.. ++|.+.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~l 165 (408)
T PRK09874 88 LRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGAL-LGPLAGGLL 165 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 777777777666655 4455566667777787644 4566677888999999999999999998888885 689899998
Q ss_pred eeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 012910 393 YDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFL 433 (453)
Q Consensus 393 ~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 433 (453)
.+..+ |+..|++.+++.++..+......+
T Consensus 166 ~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 194 (408)
T PRK09874 166 ADSYG------------LRPVFFITASVLFLCFLVTLFCIR 194 (408)
T ss_pred HHHhC------------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88766 899999888877776655554443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-12 Score=124.54 Aligned_cols=153 Identities=14% Similarity=0.052 Sum_probs=119.2
Q ss_pred hHHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHH
Q 012910 239 LEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLA 318 (453)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~ 318 (453)
+.+....++.++..........+++++.+++|.++.+.++..+.+.++..++.++.|++.||+ +||+++..+..
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~------g~k~~l~~~~~ 86 (402)
T TIGR00897 13 LNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEII------GPLKTMMIGLL 86 (402)
T ss_pred chhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc------CcHHHHHHHHH
Confidence 345555566565555555566678888899999999999999999999999999999999999 77777877777
Q ss_pred HHHHHHHHH---H--hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhhe
Q 012910 319 AMSIGHLII---A--SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIY 393 (453)
Q Consensus 319 ~~~i~~~~~---~--~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~ 393 (453)
+..++..+. . ..+.+.+++..++.|++.+...+.....+.+.+|+++|+++.|+.+....+|..+++|.+.+.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~ 166 (402)
T TIGR00897 87 LWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI 166 (402)
T ss_pred HHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 777665443 1 12444555666777888777767677778888999999999999999888886446888888888
Q ss_pred eccC
Q 012910 394 DREA 397 (453)
Q Consensus 394 ~~~g 397 (453)
+..|
T Consensus 167 ~~~g 170 (402)
T TIGR00897 167 PAFG 170 (402)
T ss_pred cccc
Confidence 8766
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.5e-12 Score=122.34 Aligned_cols=173 Identities=12% Similarity=0.084 Sum_probs=118.8
Q ss_pred HhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH
Q 012910 249 ACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA 328 (453)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~ 328 (453)
++...........+|.+.+++|++..+.+...+...++..++.++.|+++||+ +||+++..+.++..++.++..
T Consensus 46 ~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~------G~r~~~~~~~~~~~~~~~~~~ 119 (476)
T PLN00028 46 FTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY------GPRYGSAFLLMLTAPAVFCMS 119 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CChHHHHHHHHHHHHHHHHHH
Confidence 33333333444556778889999999999999999999999999999999999 667777777777777766655
Q ss_pred -hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccc
Q 012910 329 -SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGT 407 (453)
Q Consensus 329 -~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~ 407 (453)
.++...+++..++.|++.+... ....++.|.+|+++|+.+.|+.+....+|+. +++.+.+.+.+..... .+.+.
T Consensus 120 ~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~-~~~~~~~~i~~~~~~~---~~~~~ 194 (476)
T PLN00028 120 LVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGG-VTQLLMPLVFPLIKDA---GAPSF 194 (476)
T ss_pred HhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc---CCcch
Confidence 4455556666778888777543 3455788999999999999998866666664 3444444332210000 00001
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHh
Q 012910 408 HCFMLSFFIMGSATLCGSLAAFGLF 432 (453)
Q Consensus 408 ~~~~~~f~~~~~~~~~~~i~~~~~~ 432 (453)
.+|++.|++.+++.++..++.+++.
T Consensus 195 ~gWr~~f~i~g~l~l~~~l~~~~~~ 219 (476)
T PLN00028 195 TAWRIAFFVPGLLHIIMGILVLTLG 219 (476)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 2399999998888777665554443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-12 Score=131.40 Aligned_cols=166 Identities=11% Similarity=0.034 Sum_probs=125.8
Q ss_pred ecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhHHH
Q 012910 258 TVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALY 336 (453)
Q Consensus 258 ~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~ 336 (453)
+...+|.+.++.|++..+.+++.++..++.+++.+++|+++||+ +||+.+.++.++..++.++.. .++.+.++
T Consensus 186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~------GRR~~lii~lil~~i~~ll~afa~s~~~ll 259 (742)
T TIGR01299 186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL------GRKQCLLICLSVNGFFAFFSSFVQGYGFFL 259 (742)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CcHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33446666678899999999999999999999999999999999 777777777777776666655 45566777
Q ss_pred HHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCC-CCccccccchHHHHH
Q 012910 337 AGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGE-GNKCTGTHCFMLSFF 415 (453)
Q Consensus 337 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~-~~~~~~~~~~~~~f~ 415 (453)
+..++.|++.++..+....++.|.+|++.|+...++.+....+|.. +++.++..+....+... ....+...+|++.++
T Consensus 260 v~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~i-la~~la~~il~~~G~~~~~g~~~~~~gWR~l~~ 338 (742)
T TIGR01299 260 FCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGI-YAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVI 338 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccchhccccccccccHHHHHH
Confidence 8889999999999999999999999999999999999999888885 57666555544332100 001122345898888
Q ss_pred HHHHHHHHHHHHHHH
Q 012910 416 IMGSATLCGSLAAFG 430 (453)
Q Consensus 416 ~~~~~~~~~~i~~~~ 430 (453)
+.++..++.+++.++
T Consensus 339 i~~lp~ll~ll~~~~ 353 (742)
T TIGR01299 339 VCAFPCVFAIGALTF 353 (742)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777666665544433
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-12 Score=124.17 Aligned_cols=171 Identities=11% Similarity=0.099 Sum_probs=133.9
Q ss_pred HHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHH
Q 012910 240 EFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAA 319 (453)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~ 319 (453)
-++...+..++.......+...+|.+.+++|+|+++.+...+...++..++.++.|++.||+ +||+++..+.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~------g~r~~~~~~~~~ 81 (394)
T PRK03699 8 LTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII------PLKRQLIFGFAL 81 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHH
Confidence 34555555555555555566678888899999999999999999999999999999999999 667777777777
Q ss_pred HHHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCC
Q 012910 320 MSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREAS 398 (453)
Q Consensus 320 ~~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~ 398 (453)
..++..+.. .++.+.+.+..++.|++.+...+.....+.|.+|+++|+.+.+..+....+++. ++|.+.+.+.+...+
T Consensus 82 ~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~g 160 (394)
T PRK03699 82 MILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGM-IFPIIAAYLLARSIE 160 (394)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcccc
Confidence 777776665 445556667778889998888888889999999988999999988888888875 577777877654322
Q ss_pred CCCCccccccchHHHHHHHHHHHHHHHHHH
Q 012910 399 GEGNKCTGTHCFMLSFFIMGSATLCGSLAA 428 (453)
Q Consensus 399 ~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~ 428 (453)
|+..|.+.+++.++..++.
T Consensus 161 -----------w~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK03699 161 -----------WYWVYACIGLVYVAIFILT 179 (394)
T ss_pred -----------HHHHHHHHHHHHHHHHHHH
Confidence 8999988877766655433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-12 Score=128.21 Aligned_cols=173 Identities=14% Similarity=0.023 Sum_probs=141.5
Q ss_pred HHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHH
Q 012910 242 WILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMS 321 (453)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~ 321 (453)
..+++..++...-.......+|.+.+++|.+..+.++..+.+.++..++.+..|+++||+ +||+++..+..+..
T Consensus 9 ~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~------Grk~~l~~~~~~~~ 82 (495)
T PRK14995 9 VIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI------GFKRLLMLGGTLFG 82 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHH
Confidence 344555555555555566678999999999999999999999999999999999999999 78888888888888
Q ss_pred HHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhh-ccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCC
Q 012910 322 IGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIF-GVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASG 399 (453)
Q Consensus 322 i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~ 399 (453)
++.++.. .++.+.+++..++.|++.+...+.....+.+.+ |+++|+++.|+......+|.. +||.+.|.+.++.+
T Consensus 83 ~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~-~gp~lgg~l~~~~g-- 159 (495)
T PRK14995 83 LASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAA-FGPLVGGILLEHFY-- 159 (495)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccCC--
Confidence 8887776 566667778888999999888887777776765 678999999999999999995 79999999999876
Q ss_pred CCCccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 012910 400 EGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFL 433 (453)
Q Consensus 400 ~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 433 (453)
|++.|++...+.++..++.....+
T Consensus 160 ----------wr~~f~i~~~~~~~~~~l~~~~l~ 183 (495)
T PRK14995 160 ----------WGSVFLINVPIVLVVMGLTARYVP 183 (495)
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHHhCC
Confidence 899999988777776655544433
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.1e-13 Score=127.58 Aligned_cols=164 Identities=21% Similarity=0.171 Sum_probs=130.3
Q ss_pred hhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-
Q 012910 250 CGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA- 328 (453)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~- 328 (453)
+.......+....|.+.+++|.|+.+.+++.+...++..++.++.|+++||+ +||+++..+..+..++.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~------g~r~~~~~~~~~~~~~~~~~~~ 79 (379)
T TIGR00881 6 AYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS------NPRVFLPIGLILCAIVNLFFGF 79 (379)
T ss_pred HHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh------CCeehhHHHHHHHHHHHHHHHH
Confidence 3334444455567777788899999999999999999999999999999999 677778888887777777765
Q ss_pred hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhh-hhhhhheeccCCCCCCccccc
Q 012910 329 SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSV-RVVGYIYDREASGEGNKCTGT 407 (453)
Q Consensus 329 ~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~-~~~g~l~~~~g~~~~~~~~~~ 407 (453)
.++.+.+.+..++.|++.+...+...+++.|.+|+++|+++.++.+....+|.. ++| .+.+.+.+..+
T Consensus 80 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~---------- 148 (379)
T TIGR00881 80 STSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGG-LLPPLVLFGIAELYS---------- 148 (379)
T ss_pred hhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHH-HHHHHHHHHHHhcCC----------
Confidence 455566777788889999999999999999999999999999999999999986 577 45555555544
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHh
Q 012910 408 HCFMLSFFIMGSATLCGSLAAFGLF 432 (453)
Q Consensus 408 ~~~~~~f~~~~~~~~~~~i~~~~~~ 432 (453)
|+..|++.+++.++..++.+...
T Consensus 149 --~~~~~~~~~~~~~~~~~~~~~~~ 171 (379)
T TIGR00881 149 --WHWVFIVPGIIAIIVSLICFLLL 171 (379)
T ss_pred --chhHHHHHHHHHHHHHHHHheee
Confidence 78888888777666555544443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.9e-13 Score=129.57 Aligned_cols=181 Identities=13% Similarity=0.075 Sum_probs=138.8
Q ss_pred cHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCch
Q 012910 231 DLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARP 310 (453)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~ 310 (453)
+++...+++.++.+++..++...........+|.+.++.+.++.+.++..+...++..+++++.|+++||+ +||
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~------g~~ 82 (417)
T PRK10489 9 DLSLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY------DRK 82 (417)
T ss_pred HHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc------CCc
Confidence 44455678888888877777766666666678888888888999999999999999999999999999999 555
Q ss_pred hHHHHHHHHHHHHHHHHH------hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhh
Q 012910 311 LFMVITLAAMSIGHLIIA------SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIF 384 (453)
Q Consensus 311 ~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~ 384 (453)
+++..+.++..++..... .++.+.+.+..++.|++.+...+.....+.|.+|+++++++.++.+....+|.. +
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~ 161 (417)
T PRK10489 83 KLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSV-I 161 (417)
T ss_pred eEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHH-h
Confidence 555555554444443322 233445556667778888877788888899999999999999999999999985 7
Q ss_pred hhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHH
Q 012910 385 SVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFG 430 (453)
Q Consensus 385 g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~ 430 (453)
||.+.+.+.+..+ |++.|++.++..++..++...
T Consensus 162 g~~l~g~l~~~~~------------~~~~~~~~~~~~~~~~~~~~~ 195 (417)
T PRK10489 162 SPALGGLLIAAGG------------VAWNYGLAAAGTFITLLPLLR 195 (417)
T ss_pred HHHHHHHHHHHHh------------hHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988766 788888877766666544433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.1e-12 Score=122.93 Aligned_cols=160 Identities=15% Similarity=0.118 Sum_probs=129.9
Q ss_pred HHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHH
Q 012910 241 FWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAM 320 (453)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~ 320 (453)
+...++..+.............|.+.++.|.|+.+.++..+...++..++.++.|+++||+ +||+++..+.++.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~------g~r~~l~~~~~~~ 93 (426)
T PRK12307 20 LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF------GRKPLMMWSIVAY 93 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CChHHHHHHHHHH
Confidence 3444444444444444445556777788999999999999999999999999999999999 7888888888888
Q ss_pred HHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCC
Q 012910 321 SIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASG 399 (453)
Q Consensus 321 ~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~ 399 (453)
.++.++.. .++.+.+++..++.|++.+..++....++.|.+|+++|+++.++...+..+|.. +++.+.+.+.+..+
T Consensus 94 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~-~~~~l~~~l~~~~~-- 170 (426)
T PRK12307 94 SVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNI-IAAYFMPSFAEAYG-- 170 (426)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHH-HHHHHHHHHcccCC--
Confidence 88777665 455667778888999999999999999999999999999999999999999985 68878888877765
Q ss_pred CCCccccccchHHHHHHHHH
Q 012910 400 EGNKCTGTHCFMLSFFIMGS 419 (453)
Q Consensus 400 ~~~~~~~~~~~~~~f~~~~~ 419 (453)
|+..|++...
T Consensus 171 ----------w~~~f~i~~~ 180 (426)
T PRK12307 171 ----------WRAAFFVGLL 180 (426)
T ss_pred ----------HHHHHHHHHH
Confidence 8999887543
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4e-12 Score=122.24 Aligned_cols=169 Identities=14% Similarity=0.091 Sum_probs=136.4
Q ss_pred HHHHHHHHhhhcchhhecccHHHhh-hhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHH
Q 012910 242 WILSFAMACGMGSGLATVNNISQIG-GSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAM 320 (453)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~ 320 (453)
+.++...++...........++.++ +++|+|+.+.++..+...+...+.+++.|+++||+ +||+++..+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~------g~k~~l~~~~~~~ 86 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF------GAKPMIVTGMLMR 86 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh------CchHHHHHHHHHH
Confidence 4444556666566666667777766 46799999999999999999999999999999999 7788888888888
Q ss_pred HHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCC
Q 012910 321 SIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASG 399 (453)
Q Consensus 321 ~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~ 399 (453)
.++.+... .++.+.+++..++.|++.+...+...+++.|.+|+|+++++.|+.+....+|.. +||.+.+.+. ..+
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~-ig~~l~g~l~-~~g-- 162 (400)
T PRK11646 87 AAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAV-IGALLGSWLL-QYD-- 162 (400)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-Hhh--
Confidence 88887766 455566777778889888877888888999999999999999999999999995 7999999988 444
Q ss_pred CCCccccccchHHHHHHHHHHHHHHHHHHHH
Q 012910 400 EGNKCTGTHCFMLSFFIMGSATLCGSLAAFG 430 (453)
Q Consensus 400 ~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~ 430 (453)
|+..|++.+.+.++..++...
T Consensus 163 ----------~~~~f~~~~~~~~~~~i~~~~ 183 (400)
T PRK11646 163 ----------FRLVCATGAVLFVLAAAFNAW 183 (400)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHH
Confidence 899999887776666544433
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.5e-12 Score=121.76 Aligned_cols=160 Identities=13% Similarity=0.040 Sum_probs=124.3
Q ss_pred hhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHh-cchh
Q 012910 255 GLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS-GLPG 333 (453)
Q Consensus 255 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~~~~ 333 (453)
...+...+|.+.+++|.|+.+.++..+.+.++..++++..|+++||+ +||+++.........+...... .+..
T Consensus 7 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~------grr~~~~~~~~~~~~~~~~~~~~~~~~ 80 (368)
T TIGR00903 7 WVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA------FKRWFLFGSLATFAAAAGRLLDPFNYE 80 (368)
T ss_pred HHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------cchHHHHHHHHHHHHHHHHHHHhccHH
Confidence 34455668888899999999999999999999999999999999999 5566655554444444332222 4666
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHH
Q 012910 334 ALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLS 413 (453)
Q Consensus 334 ~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 413 (453)
.+.+..++.|++.+.. ......+.|.+|+++|+++.++.+.+..+|.. +++++.+.+.++.| |+..
T Consensus 81 ~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~-l~~~~~~~l~~~~g------------Wr~~ 146 (368)
T TIGR00903 81 WLLACQLLAALGQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGII-FALAAGLKIYTAGG------------LQLL 146 (368)
T ss_pred HHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccc------------hHHH
Confidence 7788889999998864 44455568999999999999999999999996 68888888887766 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 012910 414 FFIMGSATLCGSLAAFGLFLR 434 (453)
Q Consensus 414 f~~~~~~~~~~~i~~~~~~~~ 434 (453)
|++.+++.++..++.....++
T Consensus 147 f~~~~~l~~~~~~~~~~~lp~ 167 (368)
T TIGR00903 147 IIPIAAVAAAGIILVLAALPA 167 (368)
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 999888777766555544443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.2e-14 Score=140.76 Aligned_cols=349 Identities=14% Similarity=-0.011 Sum_probs=3.0
Q ss_pred ccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHH
Q 012910 32 FSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYF 110 (453)
Q Consensus 32 ~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~ 110 (453)
.......++++|+++.++.|++.+.+-++.++ .++..++.+|.. |-+.+-+|.++.++|.+
T Consensus 22 ~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~h------------------rprwig~g~~~~~~g~~ 83 (539)
T PF03137_consen 22 VNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGH------------------RPRWIGIGALLMGLGSL 83 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC------------------CcceeeecHHHHHHHHH
Confidence 45666899999999999999999999888875 477888877755 77778889999999988
Q ss_pred HHHHHH--hcC-------------------C----------------------CCCCHHHHHHHHHHHHhhhhhHhhhhh
Q 012910 111 LMWASV--VGL-------------------I----------------------PRPPVPVMCLFMLFAAHGMTFFNTADV 147 (453)
Q Consensus 111 ~~~~~~--~~~-------------------~----------------------~~~~~~~l~~~r~l~G~g~~~~~~~~~ 147 (453)
++++-. .+. . ....+..++++.++.|+|....++...
T Consensus 84 l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~ 163 (539)
T PF03137_consen 84 LFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGI 163 (539)
T ss_dssp --------------------------------------------------------------------SSS---------
T ss_pred HHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcccee
Confidence 866421 000 0 000134566899999999999999999
Q ss_pred HhHhhhcC-CCccchhheecccCCCCc-------------------cc-----ccc--cccCcccchhhhhhhh----hc
Q 012910 148 VTSVRNFP-TYSGTAVGIMKGSDSDRT-------------------SE-----TSF--CEEDELTDDPHEMHAE----KM 196 (453)
Q Consensus 148 ~~~~~~~p-~~rg~~~g~~~~~~~~~~-------------------~~-----~~~--~~w~~~~~~~~~~~~~----~~ 196 (453)
+++-|..+ ++-+..+|+..+...+++ .+ ..+ ..|-+++|.-..+... ..
T Consensus 164 tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~a 243 (539)
T PF03137_consen 164 TYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSA 243 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 99999985 677777777755443311 01 111 3454444443222111 11
Q ss_pred c--cccC---CCCcc-cCCCC--C-CC---CCCCCcCCc-------CCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhh
Q 012910 197 H--VRQD---PVGYH-RLPSE--P-DV---GTDTNDATT-------SLWGGDLDLLQAICTLEFWILSFAMACGMGSGLA 257 (453)
Q Consensus 197 ~--l~~~---~~~~~-~~~~~--~-~~---~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (453)
. ..++ |...+ ++..+ + ++ +.+...+++ ..++-....+++++||.|....++..+......+
T Consensus 244 ipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G 323 (539)
T PF03137_consen 244 IPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSG 323 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 1 1111 11100 00000 0 00 000000000 1122335667899999999999999999888889
Q ss_pred ecccHHHhhh-hcCCChhhhhHHHHHHHH-HHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHH---HHHHHhc--
Q 012910 258 TVNNISQIGG-SLGYSSFETSSLISLWSI-WNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIG---HLIIASG-- 330 (453)
Q Consensus 258 ~~~~~~~~~~-~~g~s~~~~~~~~~~~~i-~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~---~~~~~~~-- 330 (453)
+..++|-|+| +++.++.+++++.....+ +.++|.+++|++..|++.+.+ +..+...+..++..+. .+++..+
T Consensus 324 ~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~-~~~~~~~v~~~v~~~~~~~~~~~~C~~~ 402 (539)
T PF03137_consen 324 FATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSAR-GAAKFCIVVSIVSVILYSPLFFLGCPNP 402 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHH-HHHHHHHHHHHHHHHHHHHHHeecCCCC
Confidence 9999999998 569999999998877776 677999999999999965432 1112222222222211 1111100
Q ss_pred --------c----------------------------h--------hHH---HHHHHHHHHhhhhhhhhhHHHHhHhhcc
Q 012910 331 --------L----------------------------P--------GAL---YAGSILVGVCYGSQWSLMPTIASEIFGV 363 (453)
Q Consensus 331 --------~----------------------------~--------~~~---~~~~~l~g~~~g~~~~~~~~~~~~~~~~ 363 (453)
. . ..+ .+..++..+..+..........-+.+++
T Consensus 403 ~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~ 482 (539)
T PF03137_consen 403 PIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPP 482 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCCh
Confidence 0 0 001 1111222233333334444556678899
Q ss_pred ccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCC
Q 012910 364 LQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASG 399 (453)
Q Consensus 364 ~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~ 399 (453)
++|+.+.|+..+...+-+.+=+|++.|.+.|+.-..
T Consensus 483 ~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~tCl~ 518 (539)
T PF03137_consen 483 EQRSFALGVQWLIIRLLGFIPGPIIFGAIIDSTCLL 518 (539)
T ss_dssp ------------------------------------
T ss_pred hhcchhhhHHHHHHHhhcCcchHHHHhHHHhhhhhh
Confidence 999999999986655555578999999999987543
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5e-12 Score=123.76 Aligned_cols=155 Identities=17% Similarity=0.138 Sum_probs=116.8
Q ss_pred ccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHh-----cchhH
Q 012910 260 NNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS-----GLPGA 334 (453)
Q Consensus 260 ~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-----~~~~~ 334 (453)
..+|.+.++ |+|..+.++..+...++..++.++.|+++||+ +||+++..+.++.+++.+.+.. .+...
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~------g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 122 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS------NPRVFLPAGLILAAAVMLFMGFVPWATSSIAV 122 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc------CCchhHHHHHHHHHHHHHHHHhhhcccccHHH
Confidence 455665566 99999999999999999999999999999999 6777888887777777766542 13345
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHH
Q 012910 335 LYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSF 414 (453)
Q Consensus 335 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f 414 (453)
+++..++.|++.+...+.....+.|.+|+++|+++.|+.+.+..+|+.+.+|.+...+....+ |+..|
T Consensus 123 ~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g------------w~~~f 190 (452)
T PRK11273 123 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFND------------WHAAL 190 (452)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc------------HHHHH
Confidence 566667889888888787777888999999999999999988888875445543322322223 89999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 012910 415 FIMGSATLCGSLAAFGLFL 433 (453)
Q Consensus 415 ~~~~~~~~~~~i~~~~~~~ 433 (453)
++.+++.++..++.++..+
T Consensus 191 ~i~~~~~~~~~~l~~~~~~ 209 (452)
T PRK11273 191 YMPAFAAILVALFAFAMMR 209 (452)
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 9888776665555444433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.1e-12 Score=125.75 Aligned_cols=160 Identities=15% Similarity=0.021 Sum_probs=122.4
Q ss_pred hhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH------
Q 012910 255 GLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA------ 328 (453)
Q Consensus 255 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~------ 328 (453)
-..+....|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+ +||+++..+.++.++..+...
T Consensus 45 r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~------g~r~~l~~~~~~~~~~~~~~~~~~~~~ 118 (467)
T PRK09556 45 RKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK------NTKQFLPFLLILSAICMLGFGASLGSG 118 (467)
T ss_pred hcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc------CccchHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444557888889999999999999999999999999999999999 667777666666555554433
Q ss_pred hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheecc-CCCCCCccccc
Q 012910 329 SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDRE-ASGEGNKCTGT 407 (453)
Q Consensus 329 ~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~-g~~~~~~~~~~ 407 (453)
.++.+.+.+..++.|++.+...+....++.|.+|+++||++.|+...+..+|+. +++++...+.+.. +.
T Consensus 119 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~-l~~~i~~~~~~~~~~~--------- 188 (467)
T PRK09556 119 SVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGA-GAGGVALWGANYFFDG--------- 188 (467)
T ss_pred cchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhh-HHHHHHHHHHHhhccC---------
Confidence 245566777788899999998999999999999999999999999999999996 5666666555432 11
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Q 012910 408 HCFMLSFFIMGSATLCGSLAAFGL 431 (453)
Q Consensus 408 ~~~~~~f~~~~~~~~~~~i~~~~~ 431 (453)
+|+..|.+.+++.++..++.+++
T Consensus 189 -~~~~~f~~~g~~~~~~~i~~~~~ 211 (467)
T PRK09556 189 -HVIGMFIFPSIIALIIGFIGLRY 211 (467)
T ss_pred -cchhHHHHHHHHHHHHHHHHHHh
Confidence 17777777666665554444443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.9e-12 Score=121.13 Aligned_cols=159 Identities=9% Similarity=0.001 Sum_probs=127.1
Q ss_pred chhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcch
Q 012910 254 SGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLP 332 (453)
Q Consensus 254 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~ 332 (453)
....+...+|.+.+++|.|+.+.+...+.+.++..++.++.|+++||+ +||+++..+..+..++..... .++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~------g~r~~l~~~~~~~~~~~~~~~~~~~~ 101 (406)
T PRK15402 28 ANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI------GRRPVMLAGVAFFILTCLAILLAQSI 101 (406)
T ss_pred hhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CChHHHHHHHHHHHHHHHHHHHHccH
Confidence 334455567778889999999999999999999999999999999999 677777777777777666654 4555
Q ss_pred hHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHH
Q 012910 333 GALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFML 412 (453)
Q Consensus 333 ~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~ 412 (453)
+.+++..++.|++.+...+.....+.|.+|++++.+..++......++.. ++|.+.+.+.+..+ |++
T Consensus 102 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~i~~~l~~~~~------------w~~ 168 (406)
T PRK15402 102 EQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPL-LGPLVGAALIHVLP------------WRG 168 (406)
T ss_pred HHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccC------------ccH
Confidence 66677778888888887788888899999999998888888877777774 68888888888765 899
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012910 413 SFFIMGSATLCGSLAAFGL 431 (453)
Q Consensus 413 ~f~~~~~~~~~~~i~~~~~ 431 (453)
.|++.+++.++..+.....
T Consensus 169 ~~~~~~~~~~~~~~~~~~~ 187 (406)
T PRK15402 169 MFVLFAALAALSFFGLWRA 187 (406)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9988888777766544433
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2e-13 Score=125.85 Aligned_cols=178 Identities=14% Similarity=0.129 Sum_probs=147.1
Q ss_pred HHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHH
Q 012910 242 WILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMS 321 (453)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~ 321 (453)
..+++...+..+-.+.+-..++-.-+.++.++...|++.+.+.+...+..|+.|++.||+ +|++++.++..+..
T Consensus 36 ~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry------NR~~v~~vG~~iW~ 109 (493)
T KOG1330|consen 36 VILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY------NRKRVIAVGIFIWT 109 (493)
T ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc------CcceEEeeHHHHHH
Confidence 344444555555554444444444455799999999999999999999999999999999 89999999999998
Q ss_pred HHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCC
Q 012910 322 IGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGE 400 (453)
Q Consensus 322 i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~ 400 (453)
++.+... ....+.+.+...+.|+|.....+..+++++|.++.++|++.+++.+++..+|.. +|-++.+.+.+.++.
T Consensus 110 ~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsg-lG~vvgs~va~~~~~-- 186 (493)
T KOG1330|consen 110 LAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSG-LGYVVGSVVASLTFW-- 186 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccc-eeEEeeeeeccCccc--
Confidence 8888876 455567778889999999999999999999999999999999999999999985 677777777777776
Q ss_pred CCccccccchHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 012910 401 GNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKR 437 (453)
Q Consensus 401 ~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~ 437 (453)
|+++|...+++.++..++..++.++.++
T Consensus 187 ---------Wr~af~~~avl~vi~~~L~~~f~~eP~r 214 (493)
T KOG1330|consen 187 ---------WRWAFRGSAVLGVIVGLLVFLFVREPER 214 (493)
T ss_pred ---------eEEEEEeehHHHHHHHHHHHhhccCccc
Confidence 9999999999999988887777665444
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-12 Score=123.31 Aligned_cols=158 Identities=12% Similarity=0.188 Sum_probs=132.1
Q ss_pred hhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhH
Q 012910 256 LATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGA 334 (453)
Q Consensus 256 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~ 334 (453)
..+...+|.+.+++|.|+.+.+...+...++..+++++.|+++||+ +||+.+..+..+..++..+.. .++.+.
T Consensus 8 ~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~------g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 81 (377)
T PRK11102 8 DMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF------GRKPVILGGTLVFALAAVACALAQTIDQ 81 (377)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc------CChHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 3445678888899999999999999999999999999999999999 677788888888777777665 455566
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHH
Q 012910 335 LYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSF 414 (453)
Q Consensus 335 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f 414 (453)
+.+..++.|++.+...+....++.|.+|+++|+++.++.+....+|.. ++|.+.+.+.+..+ |+..|
T Consensus 82 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~------------~~~~~ 148 (377)
T PRK11102 82 LIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPL-LAPIIGGWLLVWFS------------WHAIF 148 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcC------------hHHHH
Confidence 677778889998888888889999999999999999999999899985 79988999988766 89999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 012910 415 FIMGSATLCGSLAAFGLF 432 (453)
Q Consensus 415 ~~~~~~~~~~~i~~~~~~ 432 (453)
++.+.+.++..++.....
T Consensus 149 ~~~~~~~~~~~~~~~~~~ 166 (377)
T PRK11102 149 WVLALAAILAAALVFFFI 166 (377)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 888877777665544433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1e-11 Score=119.78 Aligned_cols=161 Identities=16% Similarity=0.132 Sum_probs=126.7
Q ss_pred cchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcc
Q 012910 253 GSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGL 331 (453)
Q Consensus 253 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~ 331 (453)
.....+...+|.+.+++|.++.+.++..++..++..++.++.|+++||+ +||+.+..+..+..++.++.. .++
T Consensus 20 ~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~------g~r~~~~~~~~~~~~~~~~~~~~~~ 93 (401)
T PRK11043 20 LATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY------GRKPVLLAGLSLFALGSLGMLWVES 93 (401)
T ss_pred HHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc------CCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333444455666778899999999999999999999999999999999 667777777777777666655 445
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchH
Q 012910 332 PGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFM 411 (453)
Q Consensus 332 ~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~ 411 (453)
.+.+.+..++.|++.+...+.....+.|.+++++++...+..+....++.. ++|.+.+.+.+..+ |+
T Consensus 94 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~i~~~l~~~~g------------~~ 160 (401)
T PRK11043 94 AAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPA-LAPLLGAWLLNHFG------------WQ 160 (401)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCC------------hH
Confidence 556667778888887777777778889999988888888888888888885 68989999988776 89
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 012910 412 LSFFIMGSATLCGSLAAFGLF 432 (453)
Q Consensus 412 ~~f~~~~~~~~~~~i~~~~~~ 432 (453)
..|++.+++.++..+..+...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~ 181 (401)
T PRK11043 161 AIFATLFAITLLLILPTLRLK 181 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 999888877777665544443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1e-11 Score=119.46 Aligned_cols=169 Identities=13% Similarity=0.146 Sum_probs=131.2
Q ss_pred HHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHH
Q 012910 244 LSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIG 323 (453)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~ 323 (453)
......+...........+|.+.+++|.|+.+.++..+...++..++.++.|+++||+ +||+.+..+..+..++
T Consensus 13 ~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~------grr~~~~~~~~~~~~~ 86 (394)
T PRK11652 13 LVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV------GRRPVILVGMSIFILG 86 (394)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc------CChHHHHHHHHHHHHH
Confidence 3333334444444455667888899999999999999999999999999999999999 6777777777777777
Q ss_pred HHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCC
Q 012910 324 HLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGN 402 (453)
Q Consensus 324 ~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~ 402 (453)
.+... .++.+.+.+..++.|++.+...+.......|.+++++++.+.+..+.+..++.. ++|.+.+.+.+..+
T Consensus 87 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~i~~~l~~~~g----- 160 (394)
T PRK11652 87 TLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPL-LAPLIGGLLTTLFG----- 160 (394)
T ss_pred HHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccC-----
Confidence 66655 455566677778888888877777777888888888999999999888888885 78988998888766
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHH
Q 012910 403 KCTGTHCFMLSFFIMGSATLCGSLAAFGL 431 (453)
Q Consensus 403 ~~~~~~~~~~~f~~~~~~~~~~~i~~~~~ 431 (453)
|+..|++.+++.++..++....
T Consensus 161 -------~~~~f~~~~~~~~~~~~~~~~~ 182 (394)
T PRK11652 161 -------WRACYLFLLLLGAGVTFSMARW 182 (394)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHh
Confidence 8999988877665554443333
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.1e-12 Score=121.00 Aligned_cols=160 Identities=11% Similarity=0.013 Sum_probs=130.3
Q ss_pred hcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hc
Q 012910 252 MGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SG 330 (453)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~ 330 (453)
..........+|.+.++++.+..+.+...+++.++..+++++.|+++||+ +||+++..+..+..++.++.. .+
T Consensus 29 ~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~------Grr~~l~~~~~~~~~~~~~~~~a~ 102 (413)
T PRK15403 29 YLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI------GRRPVLITGALIFTLACAATLFTT 102 (413)
T ss_pred HHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc------CchHHHHHHHHHHHHHHHHHHHcC
Confidence 33444555667777888999999999999999999999999999999999 777788888877777777665 45
Q ss_pred chhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccch
Q 012910 331 LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCF 410 (453)
Q Consensus 331 ~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~ 410 (453)
+.+.+++..++.|++.+...+.....+.|.+|+++++++.++.+....++.. ++|.+.+.+.+..+ |
T Consensus 103 ~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~lg~~l~~~~g------------w 169 (413)
T PRK15403 103 SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPI-IGPLSGAALMHFVH------------W 169 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcC------------H
Confidence 6667777888889888766666677888999989999999999999999985 69988888887655 9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012910 411 MLSFFIMGSATLCGSLAAFG 430 (453)
Q Consensus 411 ~~~f~~~~~~~~~~~i~~~~ 430 (453)
++.|++.+++.+++.+..++
T Consensus 170 ~~~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 170 KVLFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999988887777655443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-12 Score=122.39 Aligned_cols=162 Identities=17% Similarity=0.126 Sum_probs=127.2
Q ss_pred hhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-h
Q 012910 251 GMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-S 329 (453)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~ 329 (453)
.....+.+....|.+.+++|+|+.+.+...+...++..+++++.|+++||+ +||+++..+..+..++..... .
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~------G~r~~~~~~~~~~~~~~~~~~~~ 88 (377)
T TIGR00890 15 TSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF------GPRAVAMLGGILYGLGFTFYAIA 88 (377)
T ss_pred HhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc------CccchhHHhHHHHHHHHHHHHHH
Confidence 333344555667888889999999999999999999999999999999999 677777788888777777665 4
Q ss_pred cchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccc
Q 012910 330 GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHC 409 (453)
Q Consensus 330 ~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~ 409 (453)
++.+.+++...+.|++.+..++.....+.+.+| |+|+++.++...+..+|..+ ++++.+.+.+..+
T Consensus 89 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~------------ 154 (377)
T TIGR00890 89 DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFI-LSPLITSVINLEG------------ 154 (377)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhH-HHHHHHHHHhccc------------
Confidence 555666677778899888877777777888887 67999999999999999864 4446666666554
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 012910 410 FMLSFFIMGSATLCGSLAAFGLF 432 (453)
Q Consensus 410 ~~~~f~~~~~~~~~~~i~~~~~~ 432 (453)
|++.|++.+++.++..+..+...
T Consensus 155 ~~~~f~~~~~~~~~~~~~~~~~~ 177 (377)
T TIGR00890 155 VPAAFIYMGIIFLLVIVLGAFLI 177 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhe
Confidence 89999998887777665554443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-11 Score=119.12 Aligned_cols=173 Identities=16% Similarity=0.230 Sum_probs=133.1
Q ss_pred hHHHHHHHHHHhhhcchhhecccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHH
Q 012910 239 LEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITL 317 (453)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~ 317 (453)
+.++.++...+......+....++|.|+++ +|+++.+++...+.+.....++.+++|+++||+. +||+.+..+.
T Consensus 9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRil-----Grrr~iliG~ 83 (493)
T PRK15462 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVL-----GNRMAVMLGA 83 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----CcHHHHHHHH
Confidence 345666666666666777777888988864 6999999999999999999999999999999983 4556677888
Q ss_pred HHHHHHHHHHHhc--chhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccc--cccchhhhhhhhhhhhhhhhhhhhhhhhe
Q 012910 318 AAMSIGHLIIASG--LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVL--QMGTIFNTITIANPVGSYIFSVRVVGYIY 393 (453)
Q Consensus 318 ~~~~i~~~~~~~~--~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~~g~~i~g~~~~g~l~ 393 (453)
++..++.+++... +....++...+..++.|...+...+++.|.+|++ +|.++.++.+...++|+. ++|.+.+++.
T Consensus 84 il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~-iap~l~g~L~ 162 (493)
T PRK15462 84 LLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSI-IAPIACGYAQ 162 (493)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHH-HHHHHHHHHH
Confidence 8877777665432 2223444445555677777787888999999976 689999999999999996 7999999998
Q ss_pred eccCCCCCCccccccchHHHHHHHHHHHHHHHHHHH
Q 012910 394 DREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAF 429 (453)
Q Consensus 394 ~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~ 429 (453)
+..| |+..|.+.++..+++++..+
T Consensus 163 ~~~G------------w~~~F~iaaigm~l~li~~~ 186 (493)
T PRK15462 163 EEYS------------WAMGFGLAAVGMIAGLVIFL 186 (493)
T ss_pred hhhC------------hHHHHHHHHHHHHHHHHHHH
Confidence 8776 89999887766666554443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.7e-12 Score=123.13 Aligned_cols=166 Identities=13% Similarity=0.066 Sum_probs=131.4
Q ss_pred hhHHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHH
Q 012910 238 TLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITL 317 (453)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~ 317 (453)
+|+++.+++..++............+.+.++++.++.+.++..+.+.+...+..++.|+++||+ +||+++..+.
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~------grr~vl~~~~ 75 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF------PKGRVMFIAN 75 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc------CCchhhHHHH
Confidence 4567778887777766555555556667788899999999999999999999999999999999 7778888888
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccC
Q 012910 318 AAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREA 397 (453)
Q Consensus 318 ~~~~i~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g 397 (453)
.+..++.+....... .++..++.|++.+...|...+++.|.+|+|+++++.|+.+....++.. +||.++|.+.+..
T Consensus 76 ~~~~~~~~~~~~~~~--~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~-~Gp~lgG~l~~~~- 151 (393)
T PRK11195 76 GIKLLGCLLMLFGIH--PLLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAIL-LGTVLGGALADPH- 151 (393)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-
Confidence 777766655442221 145567889999999999999999999999999999999988888885 7999999998852
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHH
Q 012910 398 SGEGNKCTGTHCFMLSFFIMGSATLCGS 425 (453)
Q Consensus 398 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 425 (453)
|...+.+.+.+.+++.
T Consensus 152 ------------~~~~~~i~~~~~~~~~ 167 (393)
T PRK11195 152 ------------AEAALAVCALIYLLAA 167 (393)
T ss_pred ------------HHHHHHHHHHHHHHHH
Confidence 5666666655544444
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.1e-12 Score=122.58 Aligned_cols=170 Identities=15% Similarity=0.190 Sum_probs=136.0
Q ss_pred hHHHHHHHHHHhhhcchhhecccHHHhhh-hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhh-hhhccccCchhHHHHH
Q 012910 239 LEFWILSFAMACGMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDY-FLHVKEWARPLFMVIT 316 (453)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr-~~~~~~~~r~~~~~~~ 316 (453)
+.+|.++...+.....++.....++.|++ ++|++..+++...+.+.....+..+++|+++|| + +||+++..+
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~------G~r~~~~~g 87 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLL------GTKRTIVLG 87 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhcc------chHHHHHHH
Confidence 34566666666666777777777777775 589999999999999998888888999999999 8 788889999
Q ss_pred HHHHHHHHHHHHhc-c-hhHHHHHHHHHHHhhhhhhhhhHHHHhHhhcccc--ccchhhhhhhhhhhhhhhhhhhhhhhh
Q 012910 317 LAAMSIGHLIIASG-L-PGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQ--MGTIFNTITIANPVGSYIFSVRVVGYI 392 (453)
Q Consensus 317 ~~~~~i~~~~~~~~-~-~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~g~~i~g~~~~g~l 392 (453)
.++..++.+..... + ...+++..++.+++.|...+...+++.|.+|+++ ++.++++.+.+.++|.. ++|.+.+++
T Consensus 88 ~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~-~g~~l~g~l 166 (489)
T PRK10207 88 AIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSL-ISLSLAPVI 166 (489)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHH-HHHHHHHHH
Confidence 99988888776632 2 2234466778899999999999999999998774 47789999999999996 799999999
Q ss_pred eeccCCCCCCccccccchHHHHHHHHHHHHHHHHH
Q 012910 393 YDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLA 427 (453)
Q Consensus 393 ~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~ 427 (453)
.++.| |++.|++..+..+++.+.
T Consensus 167 ~~~~g------------w~~~F~i~~i~~~~~~~~ 189 (489)
T PRK10207 167 ADKFG------------YSVTYNLCGAGLIIALLV 189 (489)
T ss_pred HHhhC------------hHHHHHHHHHHHHHHHHH
Confidence 98876 899998866544444433
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.3e-12 Score=123.17 Aligned_cols=152 Identities=18% Similarity=0.222 Sum_probs=116.7
Q ss_pred cccHHHhhhhcCCC--------hhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-h
Q 012910 259 VNNISQIGGSLGYS--------SFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-S 329 (453)
Q Consensus 259 ~~~~~~~~~~~g~s--------~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~ 329 (453)
...++....+.+.+ ..+.++..+.+.++..++.++.|+++||+ +||+++..+.++..++..+.. .
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~------grr~~~~~~~~~~~~~~~~~~~~ 121 (481)
T TIGR00879 48 GGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRF------GRKKSLLIIALLFVIGAILMGLA 121 (481)
T ss_pred hhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhh------hhHHHHHHHHHHHHHHHHHHHHh
Confidence 33445554454444 88999999999999999999999999999 677777887777777776653 2
Q ss_pred c---chhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhh---hhheeccCCCCCCc
Q 012910 330 G---LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVV---GYIYDREASGEGNK 403 (453)
Q Consensus 330 ~---~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~---g~l~~~~g~~~~~~ 403 (453)
. +.+.+++..++.|++.+...+....++.|.+|+++|+++.++.+.+..+|.. +++.+. +...+..+
T Consensus 122 ~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~~~~~~~~~~~~~~~~~------ 194 (481)
T TIGR00879 122 AFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGIL-VAYGFGSGKVSLNNTLG------ 194 (481)
T ss_pred ccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHH-HHHHHHHHhhcCCCCcc------
Confidence 2 2235677888999999999999999999999999999999999999999996 688666 44434433
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHH
Q 012910 404 CTGTHCFMLSFFIMGSATLCGSLAAF 429 (453)
Q Consensus 404 ~~~~~~~~~~f~~~~~~~~~~~i~~~ 429 (453)
|++.|++.+...++..+..+
T Consensus 195 ------w~~~f~~~~~~~~~~~~~~~ 214 (481)
T TIGR00879 195 ------WRIPLGLQLIPAGLLFLGLF 214 (481)
T ss_pred ------HHHHHHHHHHHHHHHHHHHh
Confidence 89999986665555544333
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-11 Score=116.18 Aligned_cols=190 Identities=12% Similarity=0.095 Sum_probs=130.2
Q ss_pred hhhHHHHHHHHHHhhhcchhhecccHHHhhh-hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHH
Q 012910 237 CTLEFWILSFAMACGMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVI 315 (453)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~ 315 (453)
-+|.++...+.+.+.......+....+.+-+ ++|+|..|.+++.++..+...+.++..|++.||+ +.|+++..
T Consensus 32 a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~------G~R~v~~~ 105 (462)
T PRK15034 32 ARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF------GGRRWTVF 105 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CChHHHHH
Confidence 3456777777766666666555555556555 7899999999999999999999999999999999 55666677
Q ss_pred HHHHHHHHHHHHHh------cchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhh---hhhh
Q 012910 316 TLAAMSIGHLIIAS------GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSY---IFSV 386 (453)
Q Consensus 316 ~~~~~~i~~~~~~~------~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~---i~g~ 386 (453)
+.++..+..+.... ++.+.+++..++.|++ +..++.....+++.+|++++|++.|+....+++|.. .+.|
T Consensus 106 ~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p 184 (462)
T PRK15034 106 STAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAP 184 (462)
T ss_pred HHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 77766666666552 4666777888899997 677888889999999999999999998544444442 1234
Q ss_pred hhhh-hheeccCCCCCCccc-cccchHHHHHHHHHHHHHHHHHHHHHhh
Q 012910 387 RVVG-YIYDREASGEGNKCT-GTHCFMLSFFIMGSATLCGSLAAFGLFL 433 (453)
Q Consensus 387 ~~~g-~l~~~~g~~~~~~~~-~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 433 (453)
.+.+ .+.+..|........ +..+++.+.++...+.++..++.++..+
T Consensus 185 ~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~ 233 (462)
T PRK15034 185 LVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMN 233 (462)
T ss_pred HHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3332 232332211100000 1334777777777777776666655533
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-11 Score=122.73 Aligned_cols=161 Identities=17% Similarity=0.201 Sum_probs=130.9
Q ss_pred HHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHH
Q 012910 240 EFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAA 319 (453)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~ 319 (453)
.+..+++..++...........+|.+.+++|.|+.+.+...+...++..++.++.|+++||+ +||+.+..+.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~------g~r~~~~~~~~~ 94 (496)
T PRK03893 21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY------GRRLAMVISIVL 94 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CcHHHHHHHHHH
Confidence 34455555555555555555567788888999999999999999999999999999999999 677777788777
Q ss_pred HHHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCC
Q 012910 320 MSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREAS 398 (453)
Q Consensus 320 ~~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~ 398 (453)
..++.++.. .++.+.+++..++.|++.+...+....++.|.+|+++|+.+.++.+....+|.. ++|.+.+.+.+..+
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~- 172 (496)
T PRK03893 95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAV-VAAQVYSLVVPVWG- 172 (496)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCC-
Confidence 777777665 455566777888999999988899999999999999999999999999999995 78989998888766
Q ss_pred CCCCccccccchHHHHHHHHH
Q 012910 399 GEGNKCTGTHCFMLSFFIMGS 419 (453)
Q Consensus 399 ~~~~~~~~~~~~~~~f~~~~~ 419 (453)
|+..|++...
T Consensus 173 -----------w~~~f~~~~~ 182 (496)
T PRK03893 173 -----------WRALFFIGIL 182 (496)
T ss_pred -----------HHHHHHHHHH
Confidence 8988876443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=118.06 Aligned_cols=146 Identities=18% Similarity=0.148 Sum_probs=113.2
Q ss_pred HHHHHHHHHHhhhcchhhecccHHH-hhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHH
Q 012910 240 EFWILSFAMACGMGSGLATVNNISQ-IGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLA 318 (453)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~ 318 (453)
.+|..++..++.......+....|. +.+++|+|+.+.++..+...++..++.++.|+++||+ +||+.+..+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~------g~r~~~~~~~~ 75 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF------GPRYTTTLSLL 75 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh------CchHHHHHHHH
Confidence 4566777777776777777777885 5578899999999999999999999999999999999 67777888888
Q ss_pred HHHHHHHHHH-hc-chhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhhe
Q 012910 319 AMSIGHLIIA-SG-LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIY 393 (453)
Q Consensus 319 ~~~i~~~~~~-~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~ 393 (453)
+..++.++.. .+ +.+.+.+..++.|++.+. .+....++.|.+|+++|+++.++......+|.. +++.+.+.+.
T Consensus 76 ~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~i~~~l~ 150 (366)
T TIGR00886 76 LLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGG-VAQFVMPPII 150 (366)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHH-HHHHHHHHHH
Confidence 8888877765 34 555666777888887554 455678899999999999999998866666653 3554444443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-11 Score=117.98 Aligned_cols=153 Identities=13% Similarity=0.054 Sum_probs=117.4
Q ss_pred hhHHHHHHHHHHhhhcchhhecccHHHhh-hhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHH
Q 012910 238 TLEFWILSFAMACGMGSGLATVNNISQIG-GSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVIT 316 (453)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~ 316 (453)
++.++.+.+..++...........+|.+. +++|.|+.+.++..+...+...+++++.|+++||+ +||+++..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~------g~r~~l~~~ 87 (392)
T PRK12382 14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY------GAKRSALQG 87 (392)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh------cchHHHHHH
Confidence 34455555555555555555566677665 57899999999999999999999999999999999 667777776
Q ss_pred HHHHHHHHHHH---H------hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhh
Q 012910 317 LAAMSIGHLII---A------SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVR 387 (453)
Q Consensus 317 ~~~~~i~~~~~---~------~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~ 387 (453)
.+...++.... . ..+.+.+++..++.|++.+...+...+++.|.+|+|+|+++.|+...+...+.. ++|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~-~g~~ 166 (392)
T PRK12382 88 MLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALA-AGAP 166 (392)
T ss_pred HHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHH-HHHH
Confidence 66555443321 1 123345667778899998888888888889999999999999999888888875 7898
Q ss_pred hhhhheeccC
Q 012910 388 VVGYIYDREA 397 (453)
Q Consensus 388 ~~g~l~~~~g 397 (453)
+.+.+.+..+
T Consensus 167 ~~~~l~~~~g 176 (392)
T PRK12382 167 LGLLLHSHFG 176 (392)
T ss_pred HHHHHHhccC
Confidence 8888888766
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.1e-11 Score=115.07 Aligned_cols=167 Identities=20% Similarity=0.283 Sum_probs=138.6
Q ss_pred HHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHH
Q 012910 244 LSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIG 323 (453)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~ 323 (453)
.....++............|.+.++.|.++.+.+...+...++..++.++.|+++||+ +||+.+..+..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~------g~r~~~~~~~~~~~~~ 77 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF------GRRRVLLLGLLLFALG 77 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh------CCchhhHHHHHHHHHH
Confidence 3444555555555666778888889999999999999999999999999999999999 6677788888888877
Q ss_pred HHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCC
Q 012910 324 HLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGN 402 (453)
Q Consensus 324 ~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~ 402 (453)
..... .++.+.+.+..++.|++.+...+....++.|.+|+|+|++..++.+....+|.. ++|.+.+.+.+..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~----- 151 (352)
T cd06174 78 SLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGAL-LGPLLGGLLAESLG----- 151 (352)
T ss_pred HHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHH-HHHHHHHHHHHHhh-----
Confidence 77766 455666777888899999999999999999999999999999999999999996 69989999988765
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHH
Q 012910 403 KCTGTHCFMLSFFIMGSATLCGSLAAF 429 (453)
Q Consensus 403 ~~~~~~~~~~~f~~~~~~~~~~~i~~~ 429 (453)
|+..+++.+.+.++..+...
T Consensus 152 -------~~~~~~~~~~~~~~~~~~~~ 171 (352)
T cd06174 152 -------WRWLFLILAILGLLLALLLL 171 (352)
T ss_pred -------HHHHHHHHHHHHHHHHHHHH
Confidence 78888888777766655443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.4e-11 Score=115.65 Aligned_cols=150 Identities=13% Similarity=0.129 Sum_probs=126.0
Q ss_pred hecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhHH
Q 012910 257 ATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGAL 335 (453)
Q Consensus 257 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~ 335 (453)
.....+|.+.+++|.|..+.++..+.+.++..++.+..|+++||+ +||+++..+..+.+++.+... .++.+.+
T Consensus 27 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~------G~r~~l~~~~~l~~~~~~~~~~a~~~~~l 100 (393)
T PRK09705 27 SVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV------SERRSVAISLLLIAVGALMRELYPQSALL 100 (393)
T ss_pred ccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh------CchHHHHHHHHHHHHHHHHHHHCcchHHH
Confidence 345667888889999999999999999999999999999999999 888999999999999998877 5566677
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHH
Q 012910 336 YAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFF 415 (453)
Q Consensus 336 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~ 415 (453)
++..++.|++.+...+..+..+.+.+| ++|+.+.|....+...|.. +++.+.+.+.++..+ |+..+.
T Consensus 101 l~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~-~g~~~~~~l~~~~~~-----------w~~~~~ 167 (393)
T PRK09705 101 LSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGG-LGAAITPWLVQHSET-----------WYQTLA 167 (393)
T ss_pred HHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHH-HHHHHHHHHHHhcCC-----------HHHHHH
Confidence 788899999999988888899999887 7899999999888888885 678788888776533 888877
Q ss_pred HHHHHHHHHH
Q 012910 416 IMGSATLCGS 425 (453)
Q Consensus 416 ~~~~~~~~~~ 425 (453)
..++..++..
T Consensus 168 ~~~~~~~~~~ 177 (393)
T PRK09705 168 WWALPAVVAL 177 (393)
T ss_pred HHHHHHHHHH
Confidence 6655544443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.9e-11 Score=116.56 Aligned_cols=166 Identities=16% Similarity=0.088 Sum_probs=127.9
Q ss_pred hHHHHHHHHHHhhhcchhhecccHHHhh-hhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHH
Q 012910 239 LEFWILSFAMACGMGSGLATVNNISQIG-GSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITL 317 (453)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~ 317 (453)
+++..+.+..++...........+|.+. +++|.|+.+.++..+...++..+++++.|+++||+ +||+++..+.
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~------g~r~~l~~~~ 88 (399)
T PRK05122 15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL------GPKKAVVFGL 88 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc------CCcchHHHHH
Confidence 4566666666666666666666778765 56899999999999999999999999999999999 6777777777
Q ss_pred HHHHHHHHHHH----hc-----chhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhh
Q 012910 318 AAMSIGHLIIA----SG-----LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRV 388 (453)
Q Consensus 318 ~~~~i~~~~~~----~~-----~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~ 388 (453)
++..++..... .+ +...+++..++.|++.+...+....++.|.+|+|+|+++.++......+|.. ++|.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~l 167 (399)
T PRK05122 89 CGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALA-IGAPL 167 (399)
T ss_pred HHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHH-HHHHH
Confidence 66655433322 11 2234566778899999988888888889999999999999998888888874 78888
Q ss_pred hhhheeccCCCCCCccccccchHHHHHHHHHHHHH
Q 012910 389 VGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLC 423 (453)
Q Consensus 389 ~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~ 423 (453)
.+.+.+..+ |+..+++..++.++
T Consensus 168 ~~~l~~~~g------------~~~~~~~~~~~~~~ 190 (399)
T PRK05122 168 GVLLYHWGG------------LAGLGLLIMLLALL 190 (399)
T ss_pred HHHHHHccc------------HHHHHHHHHHHHHH
Confidence 898888766 78777665554433
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.4e-11 Score=119.05 Aligned_cols=151 Identities=17% Similarity=0.053 Sum_probs=112.9
Q ss_pred CCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHhc----------c---hhHHH
Q 012910 270 GYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASG----------L---PGALY 336 (453)
Q Consensus 270 g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~----------~---~~~~~ 336 (453)
+.++.+.++..+.+.++..++.++.|+++||+ +||+++..+.++..++.+..... + ...++
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~------Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRF------GRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFV 124 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHH
Confidence 88889999999999999999999999999999 77888888887777766554321 1 22455
Q ss_pred HHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHH
Q 012910 337 AGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFI 416 (453)
Q Consensus 337 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~ 416 (453)
+..++.|++.|...+....++.|.+|+++|+++.++...+..+|.. +++.+.+.+.+..... .....+|++.|++
T Consensus 125 ~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~-~~~~~~~~~~~~~~~~----~~~~~gWr~~f~~ 199 (479)
T PRK10077 125 IYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQL-VVYFVNYFIARSGDAS----WLNTDGWRYMFAS 199 (479)
T ss_pred HHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhccCccc----ccccCChHHHHHH
Confidence 7778999999999999999999999999999999999988888885 4664444333211000 0011239999998
Q ss_pred HHHHHHHHHHHHHHH
Q 012910 417 MGSATLCGSLAAFGL 431 (453)
Q Consensus 417 ~~~~~~~~~i~~~~~ 431 (453)
.++..++..+..+++
T Consensus 200 ~~~~~~~~~~~~~~l 214 (479)
T PRK10077 200 EAIPALLFLMLLYFV 214 (479)
T ss_pred HHHHHHHHHHHHHcC
Confidence 877776665444433
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.3e-11 Score=116.90 Aligned_cols=177 Identities=12% Similarity=0.083 Sum_probs=117.6
Q ss_pred HHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhH
Q 012910 234 QAICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLF 312 (453)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~ 312 (453)
..+++|.+|.+.+..++...+......+++.++++ +|+|+.+.++..+...++..+++++.|+++||+ +||++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~------g~r~~ 78 (420)
T PRK09528 5 YYLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL------GLKKH 78 (420)
T ss_pred hhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CchHH
Confidence 45678899999888888877776777888888876 899999999999999999999999999999999 55666
Q ss_pred HHHHHHHHHHHHHHH---Hhcchh--HHHH----HHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhh
Q 012910 313 MVITLAAMSIGHLII---ASGLPG--ALYA----GSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYI 383 (453)
Q Consensus 313 ~~~~~~~~~i~~~~~---~~~~~~--~~~~----~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i 383 (453)
+..+..+..+....+ ...... .... ..+..+.+.....+....+.. ..+ ++++..+|.......+|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~g~~~g~~~~~~~~g~~- 155 (420)
T PRK09528 79 LLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIE-RVS-RRSGFEYGRARMWGSLGWA- 155 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHH-HHH-hhccccchhhHHhhhHHHH-
Confidence 555444333322211 111110 0111 112222222222333333332 222 4567788888888888885
Q ss_pred hhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHh
Q 012910 384 FSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLF 432 (453)
Q Consensus 384 ~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~ 432 (453)
++|++.|.+.+. + |+..|++.+++.++..++.+...
T Consensus 156 i~~~~~g~l~~~-~------------~~~~f~~~~~~~~~~~~~~~~~~ 191 (420)
T PRK09528 156 LCAFIAGILFNI-N------------PQINFWLGSGSALILLVLLFFAK 191 (420)
T ss_pred HHHHHHHHHHhc-C------------chHhHHHHHHHHHHHHHHHhccc
Confidence 688899988874 3 68888888777766665544443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.1e-11 Score=113.49 Aligned_cols=152 Identities=11% Similarity=0.023 Sum_probs=127.6
Q ss_pred hhHHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHH
Q 012910 238 TLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITL 317 (453)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~ 317 (453)
+++++.+++..++...........+|.+.+++|.|+.+.++..+...++..+++++.|+++||+ +||+.+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~------g~k~~~~~~~ 78 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI------GFNRSYYLAS 78 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH------HHHHHHHHHH
Confidence 4567788888877777777777889999999999999999999999999999999999999999 6677777777
Q ss_pred HHHHHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheecc
Q 012910 318 AAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDRE 396 (453)
Q Consensus 318 ~~~~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~ 396 (453)
.+..++..... .++.+.+.+..++.|++.+...+.....+.+..++++|+++.+..+....+|.. ++|.+.+.+.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~g~~~~~~l~~~~ 157 (381)
T PRK03633 79 LIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTV-LGQLLVSKVSTEL 157 (381)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccccc
Confidence 77777776655 456667777888999999888887777778888889999999999999999985 6898888887653
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.8e-10 Score=103.48 Aligned_cols=326 Identities=10% Similarity=-0.054 Sum_probs=189.7
Q ss_pred cccchhHHhhcC----CCccchh-HHHHHHHHhhhhcchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHH
Q 012910 33 SIYSPALKTTQH----YDQTTLD-TVSVFKDIGANTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFA 107 (453)
Q Consensus 33 ~~~~~~~~~~~~----~s~~~~~-~i~~~~~~~~~~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~ 107 (453)
+.+.-++..+++ +|+++.. +.+++..+.+...+++|+++||+= |+|+++.+|.++..+
T Consensus 42 aiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~L-----------------G~~~tI~lGail~~i 104 (498)
T COG3104 42 AILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVL-----------------GTRRTIVLGAILMAI 104 (498)
T ss_pred HHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------chhHHHHHHHHHHHH
Confidence 344445555555 9888877 677777888888899999999973 599999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcCC---CccchhheecccCCCCcc--cc------
Q 012910 108 GYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPT---YSGTAVGIMKGSDSDRTS--ET------ 176 (453)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p~---~rg~~~g~~~~~~~~~~~--~~------ 176 (453)
|.++++.. +..+...++++-++.++|.|+.-+...+++.|.+|+ +|-...++..++.+++.. |.
T Consensus 105 Gh~~L~~~-----~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~ 179 (498)
T COG3104 105 GHLVLAIS-----SVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLA 179 (498)
T ss_pred HHHHHhcc-----ccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHH
Confidence 99995543 112567888899999999999999999999999952 455566666555555321 11
Q ss_pred cccccCcccchhhhhhh---hhcccccCCCCcccCCCCCCCCCCCCcCC-------------------------------
Q 012910 177 SFCEEDELTDDPHEMHA---EKMHVRQDPVGYHRLPSEPDVGTDTNDAT------------------------------- 222 (453)
Q Consensus 177 ~~~~w~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 222 (453)
...+|...|.....-.. +...+..........+.++.........+
T Consensus 180 ~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 259 (498)
T COG3104 180 INYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVIS 259 (498)
T ss_pred HhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12566666654422111 11111111111111111100000000000
Q ss_pred ---------cCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhh---c---CCChhhhhHHHHHHHHHH
Q 012910 223 ---------TSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS---L---GYSSFETSSLISLWSIWN 287 (453)
Q Consensus 223 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---g~s~~~~~~~~~~~~i~~ 287 (453)
+....++.. .+.-|...+..+++...+.+....-..+.+..+.++ + |+ +-..++..++..+.-
T Consensus 260 i~~~~~~~~~~~~~~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~-~vp~~~fQslNp~~I 337 (498)
T COG3104 260 ILIAIIYFAEAFRSPKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGF-EVPPAWFQSLNPFFI 337 (498)
T ss_pred HHHHHHHHHHHhccCccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccce-ecCHHHHHhhCHHHH
Confidence 000000000 000011111222222222222222223334444432 2 22 234567777888888
Q ss_pred HHHhhhhhhhhhhhhhccc-cCchhHHHHHHHHHHHHHHHHHh-----------cchhHHHHHHHHHHHhhhhhhhhhHH
Q 012910 288 FLGRFGAGYVSDYFLHVKE-WARPLFMVITLAAMSIGHLIIAS-----------GLPGALYAGSILVGVCYGSQWSLMPT 355 (453)
Q Consensus 288 ~ig~~~~G~l~Dr~~~~~~-~~r~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~~~~l~g~~~g~~~~~~~~ 355 (453)
++..++..++..+.+++.+ .+.+.=...+..+++.+++++.. .+.++++...++.+++-=...|+..+
T Consensus 338 ii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs 417 (498)
T COG3104 338 ILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLS 417 (498)
T ss_pred HHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 8888888888877655422 12223345556666666655431 12346677778899999999999999
Q ss_pred HHhHhhccccccchhhhhhhhhhhhhh
Q 012910 356 IASEIFGVLQMGTIFNTITIANPVGSY 382 (453)
Q Consensus 356 ~~~~~~~~~~~g~~~g~~~~~~~~g~~ 382 (453)
++....|+.-.+..++...+....+..
T Consensus 418 ~~t~laP~~~~s~~ma~wfLt~a~~~~ 444 (498)
T COG3104 418 MVTKLAPPALKSFIMAMWFLTVAAGQT 444 (498)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888888888887777775
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.3e-11 Score=117.04 Aligned_cols=155 Identities=14% Similarity=0.105 Sum_probs=122.1
Q ss_pred hecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhHH
Q 012910 257 ATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGAL 335 (453)
Q Consensus 257 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~ 335 (453)
.+..+++.+.+++|.+..+.++..+.+.+...++.++.|+++||+ +||+++..+.++..++.++.. .++.+.+
T Consensus 37 ~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~------g~r~~l~~~~~~~~~~~~~~~~~~~~~~l 110 (455)
T TIGR00892 37 AVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF------GCRPVVIAGGLLASLGMILASFSSNVIEL 110 (455)
T ss_pred chhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc------CchHHHHhhHHHHHHHHHHHHHhhhHHHH
Confidence 344567788888999999999999999999999999999999999 677777777777777776655 3444444
Q ss_pred HHH-HHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHH
Q 012910 336 YAG-SILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSF 414 (453)
Q Consensus 336 ~~~-~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f 414 (453)
++. .++.|++.+...+.....+.+.++ ++|+++.|+.+.+..+|.. ++|++.+.+.+..+ |+++|
T Consensus 111 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~-~~~~l~~~l~~~~g------------wr~~f 176 (455)
T TIGR00892 111 YLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLS-TLAPLNQYLFESFG------------WRGSF 176 (455)
T ss_pred HHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHH-HHHHHHHHHHHHhC------------hHHHH
Confidence 433 366788887766666677788886 7899999999999999986 68888999988776 89999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012910 415 FIMGSATLCGSLAAFGL 431 (453)
Q Consensus 415 ~~~~~~~~~~~i~~~~~ 431 (453)
++.+++.+++.+..++.
T Consensus 177 ~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 177 LILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99988877665544443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.6e-11 Score=113.81 Aligned_cols=142 Identities=14% Similarity=0.109 Sum_probs=99.3
Q ss_pred hccccHHHHHHHHHHHHhhcCccc--ccccchhHHh-hcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCc
Q 012910 8 RLNTRWVSTVASIWIQCTSGSLYT--FSIYSPALKT-TQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHP 83 (453)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~-~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p 83 (453)
.++.+|..+.++.+.++..+..++ ....-|++++ |.+.+.+..|++.....++... ++..|+...|.++
T Consensus 28 ~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~------- 100 (488)
T KOG2325|consen 28 ERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGS------- 100 (488)
T ss_pred ccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCC-------
Confidence 356778877777777766554222 2222344444 6778888899877778777775 5999999999882
Q ss_pred chhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhh-cCCCccchh
Q 012910 84 RQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRN-FPTYSGTAV 162 (453)
Q Consensus 84 ~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~-~p~~rg~~~ 162 (453)
.|+-++.|.+++.+|.++.... ....+..-+.++++|++.|+|.+. ....-+++++. .+++|.+++
T Consensus 101 ----------~k~Pli~s~ii~~~g~llY~~l--~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~ 167 (488)
T KOG2325|consen 101 ----------VKKPLIVSFLIAIIGNLLYLAL--AYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAF 167 (488)
T ss_pred ----------cccCHHHHHHHHHHHHHHHHHH--HhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHH
Confidence 3888899999999999885222 233213678888999999999885 44556677765 468888887
Q ss_pred heecccC
Q 012910 163 GIMKGSD 169 (453)
Q Consensus 163 g~~~~~~ 169 (453)
+....+.
T Consensus 168 a~~~~~~ 174 (488)
T KOG2325|consen 168 AATSGGF 174 (488)
T ss_pred HHhhhHH
Confidence 7776533
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-11 Score=119.29 Aligned_cols=146 Identities=14% Similarity=0.177 Sum_probs=120.8
Q ss_pred hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH---hcchhHHHHHHHHHHH
Q 012910 268 SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA---SGLPGALYAGSILVGV 344 (453)
Q Consensus 268 ~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~l~g~ 344 (453)
+++++..+.+.+.+.+.++..++.++.|+++||+ +||+.+..+.++..++.++.. ..+...+++..++.|+
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~------g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~ 143 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY------VFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGL 143 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh------CcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 5689999999999999999999999999999999 667777777777666665543 2334456777889999
Q ss_pred hhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheecc-CCCCCCccccccchHHHHHHHHHHHHH
Q 012910 345 CYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDRE-ASGEGNKCTGTHCFMLSFFIMGSATLC 423 (453)
Q Consensus 345 ~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~-g~~~~~~~~~~~~~~~~f~~~~~~~~~ 423 (453)
+.+...+....++.|.+|+++|+++.|+.+.+..+|.. ++|++.+.+.+.. + |+..|++.++..++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-i~~~l~~~l~~~~~g------------w~~~f~i~~~~~~~ 210 (465)
T TIGR00894 144 AQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTF-IFLPISGWLCESWGG------------WPMIFYVFGIVGCA 210 (465)
T ss_pred hcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCC------------CCeehhhhhHHHHH
Confidence 99999999999999999999999999999999999996 6888999988874 5 89999998887766
Q ss_pred HHHHHHHHh
Q 012910 424 GSLAAFGLF 432 (453)
Q Consensus 424 ~~i~~~~~~ 432 (453)
..++.+...
T Consensus 211 ~~~~~~~~~ 219 (465)
T TIGR00894 211 WSLLWFVFP 219 (465)
T ss_pred HHHHHHHHh
Confidence 655444443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.26 E-value=9e-11 Score=112.06 Aligned_cols=166 Identities=9% Similarity=-0.046 Sum_probs=117.8
Q ss_pred HHhhhcchhhecccHHHhh-hhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhH-HHHHHHHHHHHHH
Q 012910 248 MACGMGSGLATVNNISQIG-GSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLF-MVITLAAMSIGHL 325 (453)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~-~~~~~~~~~i~~~ 325 (453)
.++...........+|.++ +++|.|+.+.++..+...+...+.+++.|+++||+ +||+. +..+..+..++..
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~------g~r~~~~~~~~~~~~~~~~ 79 (375)
T TIGR00899 6 AFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ------GDRKGLILFCCLLAALACL 79 (375)
T ss_pred HHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------CCchHHHHHHHHHHHHHHH
Confidence 4444444455566677776 46899999999999999999999999999999999 44443 3444444444544
Q ss_pred HHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccch--hhhhhhhhhhhhhhhhhhhhhhheeccCCCCCC
Q 012910 326 IIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTI--FNTITIANPVGSYIFSVRVVGYIYDREASGEGN 402 (453)
Q Consensus 326 ~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~ 402 (453)
+.. .++.+.+++..++.|.+.+...+....+..|..+++.++.. .+.......+|.. ++|++.+.+.+..+
T Consensus 80 ~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-ig~~~~~~l~~~~~----- 153 (375)
T TIGR00899 80 LFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWV-IGPPLAFWLALGFG----- 153 (375)
T ss_pred HHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHH-HhhhHHHHHHHhcc-----
Confidence 444 34444555555666666666677777778888776666544 5677777788885 68889999988766
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHh
Q 012910 403 KCTGTHCFMLSFFIMGSATLCGSLAAFGLF 432 (453)
Q Consensus 403 ~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~ 432 (453)
|+..|++.+.+.++..++.++..
T Consensus 154 -------~~~~f~~~~~~~~~~~~~~~~~~ 176 (375)
T TIGR00899 154 -------FTVMFLTAALAFVLCGVLVWLFL 176 (375)
T ss_pred -------cHHHHHHHHHHHHHHHHHHHHhC
Confidence 89999998887776665554433
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-10 Score=111.06 Aligned_cols=171 Identities=12% Similarity=0.111 Sum_probs=119.9
Q ss_pred hhHHHHHHHHHHhhhcchhhecccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHH
Q 012910 238 TLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVIT 316 (453)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~ 316 (453)
||.+|.+....++.+.....+..++|.++++ +|+++.+.+...+...++..+++++.|+++||+ +||+.+..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~------grr~~~~~~ 74 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL------GLKKHLLWI 74 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CcHHHHHHH
Confidence 5788888888888888777777788888864 799999999999999999999999999999999 555555554
Q ss_pred HHHHHHHHHH---HHhcc------hhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhh
Q 012910 317 LAAMSIGHLI---IASGL------PGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVR 387 (453)
Q Consensus 317 ~~~~~i~~~~---~~~~~------~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~ 387 (453)
.....+.... +.... .....+..++.|++.+...+....+..+..+ +++..+|......++|.. ++|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~-~g~~ 151 (396)
T TIGR00882 75 ISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWA-LCAS 151 (396)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHH-HHHH
Confidence 4433332221 11111 1112333455666677666666666655432 345567777777788885 6888
Q ss_pred hhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHH
Q 012910 388 VVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFG 430 (453)
Q Consensus 388 ~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~ 430 (453)
+.|.+.+. + |+..|++.+++.++..++.+.
T Consensus 152 ~~g~l~~~-~------------~~~~f~~~~~~~~~~~~~~~~ 181 (396)
T TIGR00882 152 IAGILFSI-D------------PQIVFWLGSGFALILMLLLMF 181 (396)
T ss_pred HHhhhhcc-C------------chHHHHHHHHHHHHHHHHHHH
Confidence 88888764 3 788998888777776654443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-10 Score=111.30 Aligned_cols=180 Identities=13% Similarity=0.073 Sum_probs=132.5
Q ss_pred HHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHH
Q 012910 241 FWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAM 320 (453)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~ 320 (453)
++.+++.++............+|.+.+++|.|+.+.++..+...++..++.+..|++.||+ +||+.+..+.++.
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~------G~r~~~~~g~~l~ 78 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL------SYKAGILLGLFLY 78 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CchHHHHHHHHHH
Confidence 4444444444433333334566777778999999999999999999999999999999999 7888888998888
Q ss_pred HHHHHHHH----hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheecc
Q 012910 321 SIGHLIIA----SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDRE 396 (453)
Q Consensus 321 ~i~~~~~~----~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~ 396 (453)
+++.+++. .++.+.+.+..++.|++.+...+..+.++.+..|++++++..++.+....+|.. ++|.+.+.+....
T Consensus 79 ~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~-~g~~i~~~l~~~~ 157 (410)
T TIGR00885 79 ALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSI-IGMVVAQQLILSN 157 (410)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcC
Confidence 88887753 234556667778899999999999999999999989999999999999999985 6888877765331
Q ss_pred CCCCCC--------------ccccccchHHHHHHHHHHHHHHHHH
Q 012910 397 ASGEGN--------------KCTGTHCFMLSFFIMGSATLCGSLA 427 (453)
Q Consensus 397 g~~~~~--------------~~~~~~~~~~~f~~~~~~~~~~~i~ 427 (453)
...... ......+|+.+|.+.+++.++..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 158 LPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred CccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 100000 0001234888998888766655433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-10 Score=113.30 Aligned_cols=177 Identities=18% Similarity=0.169 Sum_probs=127.0
Q ss_pred hhhhHHHHHHHHHHhhhcch----hhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchh
Q 012910 236 ICTLEFWILSFAMACGMGSG----LATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPL 311 (453)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~ 311 (453)
+++++++..+..+.+..... ......++.+.+++|-+ ....++.+...+++.++.++.|+++|.+ |||+
T Consensus 37 ~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf------GRr~ 109 (599)
T PF06609_consen 37 YRSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF------GRRY 109 (599)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh------cchH
Confidence 45566666554444433322 22234456777788776 4667777888899999999999999999 8999
Q ss_pred HHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhh
Q 012910 312 FMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVG 390 (453)
Q Consensus 312 ~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g 390 (453)
+++.+.++..++..+.. .++...+.....+.|++.|.... ....++|..|.+.|+...++......+... .+|.+..
T Consensus 110 ~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~-~~~~ia~ 187 (599)
T PF06609_consen 110 FFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTW-ISPLIAQ 187 (599)
T ss_pred HHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhc-ccHHHHH
Confidence 99999999999999887 55666777888899998777654 455689999999998777666654434332 4555555
Q ss_pred hheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 012910 391 YIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFL 433 (453)
Q Consensus 391 ~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 433 (453)
.+..+.+ ||+.|++..+...+++++..+++.
T Consensus 188 ~~~~~~~------------WRw~~~~~~i~~~i~~vl~~~fY~ 218 (599)
T PF06609_consen 188 LFAAHSG------------WRWIFYIFIIWSGIALVLIFFFYF 218 (599)
T ss_pred HhccCCC------------cchHHHHHHHHHHHHHHHHHHHhC
Confidence 5544333 999999999888888766655543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.1e-10 Score=108.17 Aligned_cols=159 Identities=9% Similarity=-0.017 Sum_probs=129.8
Q ss_pred ccHHHhhhhcCCChhh-hhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhHHHH
Q 012910 260 NNISQIGGSLGYSSFE-TSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYA 337 (453)
Q Consensus 260 ~~~~~~~~~~g~s~~~-~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~ 337 (453)
...|.+.+++|+++++ .+.+.+.+..+..+..+..|+++||+ +.|+++..+.+..++...+.. ..+...+.+
T Consensus 47 ~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl------G~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i 120 (511)
T TIGR00806 47 FITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL------RYKPVLVLQALSFVCVWLLLLLGTSVWHMQL 120 (511)
T ss_pred HHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666789999999 99999999999999999999999999 667778888877777777766 446667888
Q ss_pred HHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHH
Q 012910 338 GSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIM 417 (453)
Q Consensus 338 ~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~ 417 (453)
..+++|++.+..+ ....++.+.+|+++|+++.|+.+.+..+|.+ +++++.+.+ ...|. ..|....++.
T Consensus 121 ~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~-Ia~~L~qll-~s~gW---------r~y~~Ln~Is 188 (511)
T TIGR00806 121 MEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVF-LSSVLGQLL-VTLGW---------ISYSTLNIIS 188 (511)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HhcCc---------hhHHHHHHHH
Confidence 8999999999999 8889999999999999999999999999996 577777774 34441 2266666777
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 012910 418 GSATLCGSLAAFGLFLRTK 436 (453)
Q Consensus 418 ~~~~~~~~i~~~~~~~~~~ 436 (453)
.+...+++++.+++...+|
T Consensus 189 l~s~~~a~~~a~~LP~~~~ 207 (511)
T TIGR00806 189 LVFMTFSVFLALFLKRPKR 207 (511)
T ss_pred HHHHHHHHHHHHhCCCCch
Confidence 7777788877777764444
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-10 Score=112.62 Aligned_cols=178 Identities=15% Similarity=0.074 Sum_probs=144.8
Q ss_pred HHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhH
Q 012910 233 LQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLF 312 (453)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~ 312 (453)
...+|+|.|..++++..+...........++.+..++.-|+...+++.....+..++..+++|.+.||+ +||++
T Consensus 4 ~aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~------drrri 77 (524)
T PF05977_consen 4 FAPLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRF------DRRRI 77 (524)
T ss_pred cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------cchHH
Confidence 345889999999999888877776666667777778888899999999999999999999999999999 77888
Q ss_pred HHHHHHHHHHHHHHHH------hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhh
Q 012910 313 MVITLAAMSIGHLIIA------SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSV 386 (453)
Q Consensus 313 ~~~~~~~~~i~~~~~~------~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~ 386 (453)
+..+-++..+....+. ..+++.+++..++.|.+.....|...+.+.|++|+++...+.++.++..++... +||
T Consensus 78 li~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~-iGP 156 (524)
T PF05977_consen 78 LILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARI-IGP 156 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHh-ccc
Confidence 8877766554433322 234566778888999999999999999999999999999999999999999985 699
Q ss_pred hhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHH
Q 012910 387 RVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAF 429 (453)
Q Consensus 387 ~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~ 429 (453)
.++|.+....| ...+|.+.++..++..+...
T Consensus 157 algG~Lva~~G------------~~~~f~inalsfl~~i~~l~ 187 (524)
T PF05977_consen 157 ALGGILVAFFG------------AAAAFLINALSFLISILALL 187 (524)
T ss_pred hHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 99999998877 47788887776666554433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-10 Score=109.13 Aligned_cols=150 Identities=17% Similarity=0.151 Sum_probs=117.7
Q ss_pred hecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHhcchhHHH
Q 012910 257 ATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALY 336 (453)
Q Consensus 257 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~ 336 (453)
.+...+|.+.+++|+|..+.++..+...++..++.++.|+++||+ +||+.+..+.++..++.+....++.+.+.
T Consensus 18 ~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~------g~r~~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (355)
T TIGR00896 18 SVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF------GEERSVAAGLLLIAAGILIRSAPGTALLF 91 (355)
T ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh------CchHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 445678888899999999999999999999999999999999999 66677777776666665554444555666
Q ss_pred HHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHH
Q 012910 337 AGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFI 416 (453)
Q Consensus 337 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~ 416 (453)
+..++.|++.+...+..+..+.|.++ ++++++.|+.+....+|.. +++.+.+.+.+..+.. |+..|..
T Consensus 92 ~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~-i~~~~~~~l~~~~~~~----------w~~~f~~ 159 (355)
T TIGR00896 92 AGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAA-LAAAATVPLAQHSGGH----------WQQALAW 159 (355)
T ss_pred HHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhh----------HHHHHHH
Confidence 77788888888877777788888886 7899999999998888885 6887888877654321 7888877
Q ss_pred HHHHHHHH
Q 012910 417 MGSATLCG 424 (453)
Q Consensus 417 ~~~~~~~~ 424 (453)
.+++.++.
T Consensus 160 ~~~~~~~~ 167 (355)
T TIGR00896 160 WALPALLA 167 (355)
T ss_pred HHHHHHHH
Confidence 66554443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-10 Score=110.91 Aligned_cols=161 Identities=10% Similarity=0.007 Sum_probs=116.1
Q ss_pred HHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHH
Q 012910 242 WILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMS 321 (453)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~ 321 (453)
+.+.+.+++..........++|.++++.|.|..+.+...+...+...++.+++|.++||++|+.. .+..+..+..+..
T Consensus 7 ~~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~--~~~~~~~~~~l~~ 84 (382)
T TIGR00902 7 RWLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIII--ALRLLALASAIFA 84 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH--HHHHHHHHHHHHH
Confidence 33455555555555566777899999999999999999999999999999999999999954321 1222222222222
Q ss_pred HHHHHHHhcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCC
Q 012910 322 IGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEG 401 (453)
Q Consensus 322 i~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~ 401 (453)
+... ...++.+.+++...+.+.+.+...+...+++.+. ++++++.+|......++|.. ++|++.|.+.++.|
T Consensus 85 ~~~~-~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~-~g~~l~g~l~~~~g---- 156 (382)
T TIGR00902 85 AAFS-AGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFI-IGSALFGGLIGMFD---- 156 (382)
T ss_pred HHHH-HhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHH-HHHHHHHHHHHHcC----
Confidence 2111 1234555666666777877777777777776553 47789999999999999985 79999999999877
Q ss_pred CccccccchHHHHHHHHHH
Q 012910 402 NKCTGTHCFMLSFFIMGSA 420 (453)
Q Consensus 402 ~~~~~~~~~~~~f~~~~~~ 420 (453)
|+..|.+...+
T Consensus 157 --------~~~~f~~~~~~ 167 (382)
T TIGR00902 157 --------EQNILAILTAG 167 (382)
T ss_pred --------hhHHHHHHHHH
Confidence 78888776654
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.4e-11 Score=107.17 Aligned_cols=149 Identities=15% Similarity=0.119 Sum_probs=132.8
Q ss_pred cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHhhh
Q 012910 269 LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYG 347 (453)
Q Consensus 269 ~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~g~~~g 347 (453)
.+-+..+.|+++....+.+.+.+++.|.+.||+ +++..+.++..++..+..+++ .++.+.++++..+.|++..
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i------Gy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA 174 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRI------GYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSA 174 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHh------ccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHH
Confidence 466778999999999999999999999999999 788889999999999998888 4556678889999999999
Q ss_pred hhhhhhHHHHhHhhcccc-ccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHH
Q 012910 348 SQWSLMPTIASEIFGVLQ-MGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSL 426 (453)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i 426 (453)
.......+++++.+|+++ |++++|+.-.+.++|-. +||+.+|.++|..| ++.+|.+.++++++...
T Consensus 175 ~~~tsglamlAd~f~~d~er~~vmGialgfislG~l-vgPpfGGilYe~~G------------k~aPFlVL~~v~Lld~~ 241 (464)
T KOG3764|consen 175 FADTSGLAMLADVFPEDNERGSVMGIALGFISLGVL-VGPPFGGILYEFAG------------KSAPFLVLAIVLLLDGA 241 (464)
T ss_pred HHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccce-ecCCcccchHhhcC------------CcCcHHHHHHHHHHHHH
Confidence 999999999999999776 69999999999999995 79999999999988 79999999999999888
Q ss_pred HHHHHhhhhh
Q 012910 427 AAFGLFLRTK 436 (453)
Q Consensus 427 ~~~~~~~~~~ 436 (453)
+.+++.+.++
T Consensus 242 L~l~vi~p~~ 251 (464)
T KOG3764|consen 242 LQLLVIEPTE 251 (464)
T ss_pred HHHheeCccc
Confidence 8777665443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-10 Score=116.11 Aligned_cols=149 Identities=19% Similarity=0.201 Sum_probs=121.7
Q ss_pred cHHHhhhhcCCC---hhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhHHH
Q 012910 261 NISQIGGSLGYS---SFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALY 336 (453)
Q Consensus 261 ~~~~~~~~~g~s---~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~ 336 (453)
..+.+.++.+++ +.+.++..+.+.++..++.++.|+++||+ +||+++..+.++..++.++.. .++.+.+.
T Consensus 111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~------Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~ 184 (505)
T TIGR00898 111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF------GRKKVLLLSTLVTAVSGVLTAFSPNYTVFL 184 (505)
T ss_pred ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc------cchHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 456667788998 88999999999999999999999999999 777788888887777776665 45666777
Q ss_pred HHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHH
Q 012910 337 AGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFI 416 (453)
Q Consensus 337 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~ 416 (453)
+..++.|++.+...+....++.|.+|+++|+.+.++...+..+|.. ++|.+.+.+.+ |++.+++
T Consensus 185 ~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~~~~---------------wr~~~~~ 248 (505)
T TIGR00898 185 VFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLV-LLPLVAYFIPD---------------WRWLQLA 248 (505)
T ss_pred HHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHH-HHHHHHHHhhH---------------HHHHHHH
Confidence 8889999999999999999999999999999999999888888875 67755544432 7999988
Q ss_pred HHHHHHHHHHHHHHH
Q 012910 417 MGSATLCGSLAAFGL 431 (453)
Q Consensus 417 ~~~~~~~~~i~~~~~ 431 (453)
.++..++..+..+++
T Consensus 249 ~~i~~~~~~~~~~~~ 263 (505)
T TIGR00898 249 VSLPTFLFFLLSWFV 263 (505)
T ss_pred HHHHHHHHHHHHHhc
Confidence 887777666555433
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.17 E-value=2e-10 Score=92.72 Aligned_cols=133 Identities=13% Similarity=0.174 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHh
Q 012910 280 ISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIAS 358 (453)
Q Consensus 280 ~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~ 358 (453)
.+...++..++.++.|++.||+ +||+.+..+..+..++.+... .++.+...+..++.|++.+...+....++.
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 77 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRF------GRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIA 77 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhc------chhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3456778889999999999999 666777777777666666554 455556667778889999988899999999
Q ss_pred HhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 012910 359 EIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGL 431 (453)
Q Consensus 359 ~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~ 431 (453)
|.+|++++++..++.+....++.. ++|.+.+.+.+..+ |+..+++.+.+.+++.+.....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 78 DIYPPEERGVALGLMSAGIALGPL-LGPPLGGVLAQFLG------------WRAPFLFLAILALAAFILLAFL 137 (141)
T ss_pred HHCChhhhhHHHHHHHHhHHHHHH-HhHHhHHHHhcccc------------hHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999995 68989999988765 7888888877777666554443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.8e-10 Score=106.13 Aligned_cols=341 Identities=13% Similarity=0.030 Sum_probs=186.8
Q ss_pred cccchhHHhhcCCCccchhHHHHHHHHhhhhcchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHHH
Q 012910 33 SIYSPALKTTQHYDQTTLDTVSVFKDIGANTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLM 112 (453)
Q Consensus 33 ~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~ 112 (453)
....|.+++++|+|+++.+.+.....+--..-++.|.++|-+. -+|.| ||+-++++.++..++...+
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~p-i~G~r------------r~~Y~~i~~~~~~~~~~~~ 76 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFP-IFGYR------------RKPYMIIGWLLGAVSALVL 76 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhccccc-ccCCc------------chHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999777777777777899999999985 12222 6777888888876666654
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhc---CCCccchhheecccCCC--------Cccccccccc
Q 012910 113 WASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNF---PTYSGTAVGIMKGSDSD--------RTSETSFCEE 181 (453)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~---p~~rg~~~g~~~~~~~~--------~~~~~~~~~w 181 (453)
+.. .... .+.....+.-++..+|.......+-+.+.|.. |+++|...+.......+ ........+.
T Consensus 77 ~~~-~~~~--~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~ 153 (433)
T PF03092_consen 77 ALL-PASE--SSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGP 153 (433)
T ss_pred Hhc-cccc--chhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCC
Confidence 443 1211 35666667778888999999998888888775 44455544443211111 1112223566
Q ss_pred Ccccchhhhhhhhh--cccccCCCCcccCCCCCC-CCCCCCcCCcC-CCCCCccHHHHhhhhHHHHHHH-HHHhhhcchh
Q 012910 182 DELTDDPHEMHAEK--MHVRQDPVGYHRLPSEPD-VGTDTNDATTS-LWGGDLDLLQAICTLEFWILSF-AMACGMGSGL 256 (453)
Q Consensus 182 ~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 256 (453)
+..|.+......+. ..+...+++..++..+.. ..++..+.... .++.....++.++.+..|...+ ..++......
T Consensus 154 ~~~f~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 233 (433)
T PF03092_consen 154 QGVFLISAALPLLMLIVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPS 233 (433)
T ss_pred eEEehHHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccC
Confidence 77776553332222 112222221111111000 00000000000 1112234566777777776555 2222222111
Q ss_pred hecccHHHhh--hhcC---CChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH---
Q 012910 257 ATVNNISQIG--GSLG---YSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA--- 328 (453)
Q Consensus 257 ~~~~~~~~~~--~~~g---~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~--- 328 (453)
.......+. ...+ +|+...+.+..+..++.++|..+..+. .++. +-|.++..+.++.++..+.-.
T Consensus 234 -~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~----~~~~--~~R~~~~~t~~~~~~~~l~~~~lv 306 (433)
T PF03092_consen 234 -ISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKY----FSNW--SWRRIFVVTTLVSVLASLFDLLLV 306 (433)
T ss_pred -CCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH----HhCC--CHHHHHHHHHHHHHHHhcccEEEE
Confidence 111101111 1234 777777777766666666666665443 3332 334455555444443333211
Q ss_pred --h------cchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccC
Q 012910 329 --S------GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREA 397 (453)
Q Consensus 329 --~------~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g 397 (453)
. ++.+....-.++..+.....+-....+++|+.|+...|+.+++.....++|.. ++..++..+.+..+
T Consensus 307 ~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~-~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 307 TRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSS-VSSTLGAFLMELFG 382 (433)
T ss_pred EEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcC
Confidence 0 11111222334444444555555667899999999999999999988888886 56667777766655
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.9e-10 Score=110.49 Aligned_cols=155 Identities=14% Similarity=0.105 Sum_probs=117.9
Q ss_pred hhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHh------
Q 012910 256 LATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS------ 329 (453)
Q Consensus 256 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~------ 329 (453)
+.+....+.+.+++|+|..+.+.+.+... ......+..|++.||+ ++|+++.++.++..++.++...
T Consensus 44 y~fsv~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~------G~R~vllig~ll~~iG~ll~ala~~~~i 116 (591)
T PTZ00207 44 YAFNLISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYL------GPRPIFVLSMTVFCLGTLLFALTFQEVI 116 (591)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHh------CcHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34445567777788999999988887633 3345667789999999 7888999999999998887763
Q ss_pred -cchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCcccccc
Q 012910 330 -GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTH 408 (453)
Q Consensus 330 -~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~ 408 (453)
.+.+.+.+..++.|++.+...+.....+.+.+| ++||.+.|+......+|+.+++++..+++.+.
T Consensus 117 ~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~------------- 182 (591)
T PTZ00207 117 EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDN------------- 182 (591)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------
Confidence 245566777788898888877777888899997 78999999999999999977777666655432
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHh
Q 012910 409 CFMLSFFIMGSATLCGSLAAFGLF 432 (453)
Q Consensus 409 ~~~~~f~~~~~~~~~~~i~~~~~~ 432 (453)
|+..|++.+++.++..++.+.+.
T Consensus 183 -~~~~fl~l~vl~~vv~ll~~~~v 205 (591)
T PTZ00207 183 -TSAYFFFLMSFALVVGILAIVFM 205 (591)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhe
Confidence 67777777777666655555443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.5e-10 Score=106.41 Aligned_cols=163 Identities=12% Similarity=0.057 Sum_probs=116.7
Q ss_pred hhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHh-
Q 012910 251 GMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS- 329 (453)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~- 329 (453)
...........+|.++++.|+|.++.+++..+... .+..+++|+++||+..+...+||+.+..+.++.+++...+..
T Consensus 11 ~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~ 88 (402)
T PRK11902 11 SGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFC 88 (402)
T ss_pred HhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhc
Confidence 33344445667899999999999999998666554 688999999999993111003444566666666555555442
Q ss_pred ---cchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCcccc
Q 012910 330 ---GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTG 406 (453)
Q Consensus 330 ---~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~ 406 (453)
.+.+.+.+..++.+++.....+...+++.|.+|+|+|+++.++...+..+|.. +++.+.+.+.+...+
T Consensus 89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i-~g~~l~~~l~~~~~g-------- 159 (402)
T PRK11902 89 PPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAML-VSGGLALWLADRVLG-------- 159 (402)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHH-HHhHHHHHHHhcccC--------
Confidence 12333444445667777777788889999999999999999999988888885 677778888775322
Q ss_pred ccchHHHHHHHHHHHHHHHHH
Q 012910 407 THCFMLSFFIMGSATLCGSLA 427 (453)
Q Consensus 407 ~~~~~~~f~~~~~~~~~~~i~ 427 (453)
|+..|++.+++.++..+.
T Consensus 160 ---w~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 160 ---WGNTYLLMAGLMLAGALT 177 (402)
T ss_pred ---HHHHHHHHHHHHHHHHHH
Confidence 899999988877665543
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.3e-10 Score=106.47 Aligned_cols=177 Identities=10% Similarity=-0.041 Sum_probs=115.0
Q ss_pred hhHHHHHHHHHHhhhcchhhecccHHHhhh-hcCCChhhhhHHHHHHHH-HHHHHhhhhhhhhhhhhhccccCchhHHHH
Q 012910 238 TLEFWILSFAMACGMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSI-WNFLGRFGAGYVSDYFLHVKEWARPLFMVI 315 (453)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~i-~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~ 315 (453)
|.+.+..++..++.......+...++.+.. ++|.|+++.++..+...+ +..++.+.+++ +||+++ ||.++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~-----r~~~~~~ 87 (393)
T PRK15011 14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGD-----RKSLIVF 87 (393)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcccc-----hhHHHHH
Confidence 556677777777776666666777787764 679999999999876655 55555555666 999952 2333444
Q ss_pred HHHHHHHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhcccccc--chhhhhhhhhhhhhhhhhhhhhhhh
Q 012910 316 TLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMG--TIFNTITIANPVGSYIFSVRVVGYI 392 (453)
Q Consensus 316 ~~~~~~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~g~~i~g~~~~g~l 392 (453)
+.++..++..+.. .++.+.+.+...+.+...+...+....+..+..+++.|. ...++.+.+..+|.. ++|++.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~-~g~~i~~~l 166 (393)
T PRK15011 88 CCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWV-IGPPLAYAL 166 (393)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHH-HhhHHHHHH
Confidence 4454445444444 333333333333444444455566666677766554442 234677788889985 799999999
Q ss_pred eeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 012910 393 YDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFL 433 (453)
Q Consensus 393 ~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 433 (453)
.++.| |+..|+..+...++..+..+...+
T Consensus 167 ~~~~g------------w~~~f~~~~~~~~~~~~~~~~~~~ 195 (393)
T PRK15011 167 AMGFS------------FTVMYLSAAVAFIVCGVMVWLFLP 195 (393)
T ss_pred HHhcC------------hHHHHHHHHHHHHHHHHHHHhhcC
Confidence 98876 899999888777766655444433
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.1e-10 Score=105.68 Aligned_cols=177 Identities=18% Similarity=0.216 Sum_probs=146.2
Q ss_pred HHHHHHHHHHhhhcchhhecccHHHhhh-hc----CCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHH
Q 012910 240 EFWILSFAMACGMGSGLATVNNISQIGG-SL----GYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMV 314 (453)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~ 314 (453)
.++.++..-+.--+++++....+..|+. +. |+|++++.-+.+.+...--...+++||++||+- |+++.+.
T Consensus 22 ~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~L-----G~~~tI~ 96 (498)
T COG3104 22 GLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVL-----GTRRTIV 96 (498)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhc-----chhHHHH
Confidence 4555666666666666666666666654 33 599999999998888888888999999999996 8899999
Q ss_pred HHHHHHHHHHHHHHhc---chhHHHHHHHHHHHhhhhhhhhhHHHHhHhhcccc--ccchhhhhhhhhhhhhhhhhhhhh
Q 012910 315 ITLAAMSIGHLIIASG---LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQ--MGTIFNTITIANPVGSYIFSVRVV 389 (453)
Q Consensus 315 ~~~~~~~i~~~~~~~~---~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~g~~i~g~~~~ 389 (453)
.+.++..++.+++..+ .+..+++..+++++|.|..=+...+++.|.+|+++ |....++.+++.++|++ ++|.+.
T Consensus 97 lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl-~~p~i~ 175 (498)
T COG3104 97 LGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSL-IAPIIT 175 (498)
T ss_pred HHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHH-HHHHHH
Confidence 9999999999998844 45678888999999999999999999999998754 56688888999999996 799999
Q ss_pred hhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 012910 390 GYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLR 434 (453)
Q Consensus 390 g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~ 434 (453)
+++.++.| |...|...++-..++++..+..++.
T Consensus 176 ~~~~~~~g------------~~~gF~~aavGm~~gl~~f~~~~r~ 208 (498)
T COG3104 176 GLLAINYG------------WHVGFGLAAVGMIIGLVIFLLGRRH 208 (498)
T ss_pred HHHHHhhC------------HHHHHHHHHHHHHHHHHHHHHccch
Confidence 99999988 8999999998888888777666543
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-09 Score=107.53 Aligned_cols=173 Identities=16% Similarity=0.074 Sum_probs=112.7
Q ss_pred HHHHHHHHHhhhcchhhecccHHHhhhhcC--CChhh--hhH--HHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHH
Q 012910 241 FWILSFAMACGMGSGLATVNNISQIGGSLG--YSSFE--TSS--LISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMV 314 (453)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~s~~~--~~~--~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~ 314 (453)
+....+..++-..-...+....|.+.++.. .++.. .+. ..+...++..+|.++.|+++||+ +||+++.
T Consensus 18 ~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~------Grr~~l~ 91 (490)
T PRK10642 18 ITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY------GRQKILA 91 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ccHHHHH
Confidence 334444555544333333344455555553 32211 111 24666788899999999999999 7888999
Q ss_pred HHHHHHHHHHHHHH-hcchh--------HHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhh
Q 012910 315 ITLAAMSIGHLIIA-SGLPG--------ALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFS 385 (453)
Q Consensus 315 ~~~~~~~i~~~~~~-~~~~~--------~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g 385 (453)
.+.++.+++.++.. .++.. .+.+..++.|++.|+.++....++.|.+|+++||...++...+..+|.. ++
T Consensus 92 ~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~-lg 170 (490)
T PRK10642 92 ITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFV-LG 170 (490)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH-HH
Confidence 99999988888876 33432 2566778999999999999999999999999999999988877777764 45
Q ss_pred hhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHH
Q 012910 386 VRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCG 424 (453)
Q Consensus 386 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~ 424 (453)
+.+...+....+. ......+|++.|++.+...+++
T Consensus 171 ~~~~~~~~~~~~~----~~~~~~gWR~~f~i~~~~~l~~ 205 (490)
T PRK10642 171 AGVVVLISTIVGE----ANFLDWGWRIPFFIALPLGIIG 205 (490)
T ss_pred HHHHHHHHHhcCH----HHhcCccHHHHHHHHHHHHHHH
Confidence 5443332211000 0000112999998866544443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.1e-10 Score=107.06 Aligned_cols=147 Identities=11% Similarity=0.029 Sum_probs=116.0
Q ss_pred HHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHH
Q 012910 240 EFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAA 319 (453)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~ 319 (453)
.+..+.+.++.............|.+.+++|.|+.+.++..+.+.++..++.++.|++.||+ +||+++..+..+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~------G~r~~l~~g~~~ 100 (438)
T PRK10133 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL------SYKAGIITGLFL 100 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CcHHHHHHHHHH
Confidence 34455555555555555555667888778899999999999999999999999999999999 788889999988
Q ss_pred HHHHHHHHH----hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhhe
Q 012910 320 MSIGHLIIA----SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIY 393 (453)
Q Consensus 320 ~~i~~~~~~----~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~ 393 (453)
..++.+++. .++...+.+..++.|++.+...+..+.++.|..+++++....++.+....+|.. ++|.+++.+.
T Consensus 101 ~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~-~g~~~g~~l~ 177 (438)
T PRK10133 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAI-IAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 888887642 345566778889999999999999999988876655555678888888888885 6776665443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-09 Score=105.07 Aligned_cols=166 Identities=14% Similarity=0.095 Sum_probs=108.3
Q ss_pred HHhhhcchhhecccHHHhhhhc---CCChhhh---hHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHH
Q 012910 248 MACGMGSGLATVNNISQIGGSL---GYSSFET---SSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMS 321 (453)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~---g~s~~~~---~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~ 321 (453)
.++...-...+....|.+.++. +.+..+. +..++...++..+|.+++|+++||+ +||+++..+..+..
T Consensus 31 ~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~------Grr~~l~~~~~~~~ 104 (432)
T PRK10406 31 NLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH------GRKKSMLISVCMMC 104 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 3333333333333445555665 3444433 3344555566669999999999999 78888888888888
Q ss_pred HHHHHHHh-cch--------hHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhh
Q 012910 322 IGHLIIAS-GLP--------GALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYI 392 (453)
Q Consensus 322 i~~~~~~~-~~~--------~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l 392 (453)
++.++... ++. ..+.+..++.|++.|..++....++.|.+|+++|+...++.+.+...|.. .++.+...+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~-~~~~~~~~~ 183 (432)
T PRK10406 105 FGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQL-LALLVVVVL 183 (432)
T ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 88877652 322 24667778999999999999999999999999999998887776666664 455433332
Q ss_pred eeccCCCCCCccccccchHHHHHHHHHHHHHH
Q 012910 393 YDREASGEGNKCTGTHCFMLSFFIMGSATLCG 424 (453)
Q Consensus 393 ~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~ 424 (453)
.....+ ......+|+..|++.++..++.
T Consensus 184 ~~~~~~----~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 184 QQTLED----AELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred HHhCCH----HHHhccchHHHHHHHHHHHHHH
Confidence 211000 0000112999998866655543
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-10 Score=116.32 Aligned_cols=165 Identities=14% Similarity=0.170 Sum_probs=125.4
Q ss_pred ccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHhcc--------
Q 012910 260 NNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGL-------- 331 (453)
Q Consensus 260 ~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~-------- 331 (453)
..++.+-+++++++.+.|++.+.+.++..++.++.+++.||. +|++.+.++.++.+++.+++..++
T Consensus 54 ~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~------~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~ 127 (633)
T TIGR00805 54 SSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL------HRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSY 127 (633)
T ss_pred hhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc------CcceEEEecHHHHHHHHHHHhChHHhcCCccc
Confidence 345666667899999999999999999999999999999999 667777888888888887765221
Q ss_pred --------------------------------------------hhHHHHHHHHHHHhhhhhhhhhHHHHhHhhcccccc
Q 012910 332 --------------------------------------------PGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMG 367 (453)
Q Consensus 332 --------------------------------------------~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g 367 (453)
...+++..++.|++.+..++...+++.|.+|+++++
T Consensus 128 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~ 207 (633)
T TIGR00805 128 STTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSP 207 (633)
T ss_pred cccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccH
Confidence 123456788999999999999999999999999999
Q ss_pred chhhhhhhhhhhhhhhhhhhhhhhheeccCCCC----CCccccc------cchHHHHHHHHHHHHHHHHHHHHH
Q 012910 368 TIFNTITIANPVGSYIFSVRVVGYIYDREASGE----GNKCTGT------HCFMLSFFIMGSATLCGSLAAFGL 431 (453)
Q Consensus 368 ~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~----~~~~~~~------~~~~~~f~~~~~~~~~~~i~~~~~ 431 (453)
...|+.+....+|.. +|+++++.+.+...+.. ......+ .+|+..|++.+++.++.++..+++
T Consensus 208 ~~~~i~~~~~~iG~~-lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~ 280 (633)
T TIGR00805 208 LYIGILESIAVFGPA-FGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFF 280 (633)
T ss_pred HHHHHHHHHHHhhhH-HHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999995 79988888876542210 0000111 136667877777776665444433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-09 Score=107.79 Aligned_cols=154 Identities=14% Similarity=0.078 Sum_probs=111.1
Q ss_pred CCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHh-cc------hhHHHHHHHHH
Q 012910 270 GYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS-GL------PGALYAGSILV 342 (453)
Q Consensus 270 g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~~------~~~~~~~~~l~ 342 (453)
..++.+.+++.+...++..++.++.|+++||+ +||+.+..+.++..++..+... .+ ...+.+..++.
T Consensus 52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~------Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~ 125 (502)
T TIGR00887 52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKL------GRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWL 125 (502)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------ccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHH
Confidence 35566778899999999999999999999999 7788888877777777665442 22 34567788899
Q ss_pred HHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCC----CCCC-c--c----ccccchH
Q 012910 343 GVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREAS----GEGN-K--C----TGTHCFM 411 (453)
Q Consensus 343 g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~----~~~~-~--~----~~~~~~~ 411 (453)
|++.+...+..+.++.|.+|+++|+++.++.+....+|.. +++.+...+...... .... . + +...+|+
T Consensus 126 G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR 204 (502)
T TIGR00887 126 GVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGIL-AGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWR 204 (502)
T ss_pred HHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccccccccccccccchhcccHH
Confidence 9999999999999999999999999999999988888885 566565544321100 0000 0 0 0012499
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012910 412 LSFFIMGSATLCGSLAAFG 430 (453)
Q Consensus 412 ~~f~~~~~~~~~~~i~~~~ 430 (453)
..+.+.++..++..+..++
T Consensus 205 ~~~~~~~ip~~i~~~~~~~ 223 (502)
T TIGR00887 205 ILIGFGAVPALLALYFRLT 223 (502)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9997776666555544333
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-09 Score=106.33 Aligned_cols=182 Identities=11% Similarity=-0.015 Sum_probs=128.4
Q ss_pred HHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHH
Q 012910 234 QAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFM 313 (453)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~ 313 (453)
+..++++.+.++...+............+|.++++.|.|..+.+.. +..+... ++++++|.++||+.+.+.-+|+..+
T Consensus 7 ~~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~l 84 (491)
T PRK11010 7 RIFQQPNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWL 84 (491)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHH
Confidence 3445556666655555555555566677899999999999888886 3333332 6889999999998321110234345
Q ss_pred HHHHHHHHHHHHHHHh----cchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhh
Q 012910 314 VITLAAMSIGHLIIAS----GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVV 389 (453)
Q Consensus 314 ~~~~~~~~i~~~~~~~----~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~ 389 (453)
..+.+..+++...... .+.+.+.+..++.+++.+...+...++..|.+|+++|+++.++...+..+|.. +++.+.
T Consensus 85 l~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~l-lg~~l~ 163 (491)
T PRK11010 85 LATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAML-VSGGLA 163 (491)
T ss_pred HHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHH-HHHHHH
Confidence 5555555555544431 23345555667778888888888889999999999999999999999999985 678788
Q ss_pred hhheec-cCCCCCCccccccchHHHHHHHHHHHHHHHHHHHH
Q 012910 390 GYIYDR-EASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFG 430 (453)
Q Consensus 390 g~l~~~-~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~ 430 (453)
+.+.++ .| |+..|++.+++.++..+..+.
T Consensus 164 ~~l~~~~~G------------Wr~~f~i~a~l~ll~~l~~~~ 193 (491)
T PRK11010 164 LWLADRYLG------------WQGMYWLMAALLIPCIIATLL 193 (491)
T ss_pred HHHHhcccC------------HHHHHHHHHHHHHHHHHHHHh
Confidence 888874 34 999999998877776554444
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.7e-10 Score=105.90 Aligned_cols=154 Identities=11% Similarity=0.010 Sum_probs=111.4
Q ss_pred cchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcc
Q 012910 253 GSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGL 331 (453)
Q Consensus 253 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~ 331 (453)
.+...+...+|.++++.|.|..+.+...+...+...++.++.|.++||++|++. .++.. .+...+.. ..... .++
T Consensus 18 ~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~-~~~~~-~~~~~~~~--~~~~~~~~~ 93 (382)
T PRK11128 18 FAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIP-ALRLL-ALLTLLFA--VAFWFGAHS 93 (382)
T ss_pred HHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHH-HHHHH-HHHHHHHH--HHHHHhccc
Confidence 334455667889999999999999999999999999999999999999965321 11222 22222211 11222 345
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchH
Q 012910 332 PGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFM 411 (453)
Q Consensus 332 ~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~ 411 (453)
.+.+++..++.|++.+...+...+.+.+. +++++.+.|.......+|.. ++|++.+.+.++.| |+
T Consensus 94 ~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~-igp~lgg~l~~~~g------------~~ 158 (382)
T PRK11128 94 FWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFV-IGSALTGKLVSWFG------------EQ 158 (382)
T ss_pred HHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHH-HHHHHHHHHHHHcC------------hh
Confidence 55666667778888887778776666665 35678888888888889885 79999999999877 89
Q ss_pred HHHHHHHHHHHHHH
Q 012910 412 LSFFIMGSATLCGS 425 (453)
Q Consensus 412 ~~f~~~~~~~~~~~ 425 (453)
..|++.++..++..
T Consensus 159 ~~f~~~~~~~~~~~ 172 (382)
T PRK11128 159 AILWILTAGVASML 172 (382)
T ss_pred HHHHHHHHHHHHHH
Confidence 99887776554443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-09 Score=105.54 Aligned_cols=185 Identities=11% Similarity=-0.019 Sum_probs=121.5
Q ss_pred HHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHH-HHHHHHHHHHH
Q 012910 248 MACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVI-TLAAMSIGHLI 326 (453)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~-~~~~~~i~~~~ 326 (453)
.+...........++++|++++|.+....+....+..+...+..++.|+++||...|. |||+..+. +.....+++.+
T Consensus 13 ~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~--GRRrp~il~g~~~~~~~l~l 90 (477)
T TIGR01301 13 AAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF--GRRRPFIAAGAALVAFAVIL 90 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC--CChHHHHHHHHHHHHHHHHH
Confidence 3333444445556778888999999999999999999999999999999999743332 45554444 45555555555
Q ss_pred HHh-cch-----------------hHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccc--cchhhhhhhhhhhhhhhhhh
Q 012910 327 IAS-GLP-----------------GALYAGSILVGVCYGSQWSLMPTIASEIFGVLQM--GTIFNTITIANPVGSYIFSV 386 (453)
Q Consensus 327 ~~~-~~~-----------------~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~--g~~~g~~~~~~~~g~~i~g~ 386 (453)
+.. .+. ....+...+..++.....+...+++.|.+|++++ +.+.++.+...++|+. +++
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~i-lg~ 169 (477)
T TIGR01301 91 IGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNV-LGY 169 (477)
T ss_pred HHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHH-HHH
Confidence 542 111 1112223344556777777888999999998865 5688888888899985 687
Q ss_pred hhhhhh--eeccCCCCCC-ccccccchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012910 387 RVVGYI--YDREASGEGN-KCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRT 435 (453)
Q Consensus 387 ~~~g~l--~~~~g~~~~~-~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~ 435 (453)
.+.+.. .+..+..... ...-...++..|++.+++.+++.++..+..+|.
T Consensus 170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~ 221 (477)
T TIGR01301 170 AAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKEN 221 (477)
T ss_pred HHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence 666653 2211110000 011123488999998888888877766655543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.4e-10 Score=110.38 Aligned_cols=255 Identities=11% Similarity=-0.048 Sum_probs=166.8
Q ss_pred ccccchhHHhhcCCCccchhHHHHHHHHhhhhc-chhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHH
Q 012910 32 FSIYSPALKTTQHYDQTTLDTVSVFKDIGANTG-TLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYF 110 (453)
Q Consensus 32 ~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~ 110 (453)
+......+.+.|+++.++.|++.+.+-++..+. .+..+...|.- |-+.+-+|.++.++|.+
T Consensus 116 ~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~H------------------rPr~Ig~G~~~m~lgsl 177 (735)
T KOG3626|consen 116 FNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGH------------------RPRWIGIGLVLMGLGSL 177 (735)
T ss_pred hhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccC------------------ccceeeechhHHHHHHH
Confidence 455668899999999999999999998888865 78888777766 77888899999999999
Q ss_pred HHHHHH----------hc-----CC----------------------------CCCC-HH-HHHHHHHHHHhhhhhHhhh
Q 012910 111 LMWASV----------VG-----LI----------------------------PRPP-VP-VMCLFMLFAAHGMTFFNTA 145 (453)
Q Consensus 111 ~~~~~~----------~~-----~~----------------------------~~~~-~~-~l~~~r~l~G~g~~~~~~~ 145 (453)
++++-. .. -. ..++ ++ .++++.++.|+|....++.
T Consensus 178 l~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tl 257 (735)
T KOG3626|consen 178 LFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTL 257 (735)
T ss_pred HHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccC
Confidence 876530 00 00 0011 33 4558999999999999999
Q ss_pred hhHhHhhhcC-CCccchhheecccCCC-------------Cc------c--cccc--cccCcccchhhhh----hhhhcc
Q 012910 146 DVVTSVRNFP-TYSGTAVGIMKGSDSD-------------RT------S--ETSF--CEEDELTDDPHEM----HAEKMH 197 (453)
Q Consensus 146 ~~~~~~~~~p-~~rg~~~g~~~~~~~~-------------~~------~--~~~~--~~w~~~~~~~~~~----~~~~~~ 197 (453)
..+++-|... ++-...+|+......+ .. . .+.+ ..|-..+|.-..+ .....+
T Consensus 258 GisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~ 337 (735)
T KOG3626|consen 258 GISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAV 337 (735)
T ss_pred CCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999885 6666777766433222 01 1 1111 3344444433221 111111
Q ss_pred -cccCCCCcccCCC---CCCC--CCCCCc--CCcCC-----CCCCccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHH
Q 012910 198 -VRQDPVGYHRLPS---EPDV--GTDTND--ATTSL-----WGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQ 264 (453)
Q Consensus 198 -l~~~~~~~~~~~~---~~~~--~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (453)
+...|.+.++... ..+. ..++++ +..+. ++-....+++++||.|....++..+......++.+++|-
T Consensus 338 p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPK 417 (735)
T KOG3626|consen 338 PLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPK 417 (735)
T ss_pred HHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHH
Confidence 1122221111110 0000 000000 00000 112345677899999999999999999999999999999
Q ss_pred hhh-hcCCChhhhhHHHHHHHH-HHHHHhhhhhhhhhhhhhc
Q 012910 265 IGG-SLGYSSFETSSLISLWSI-WNFLGRFGAGYVSDYFLHV 304 (453)
Q Consensus 265 ~~~-~~g~s~~~~~~~~~~~~i-~~~ig~~~~G~l~Dr~~~~ 304 (453)
|+| ++|.++..+..+....++ +..+|.+++|++..|+.-+
T Consensus 418 yLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~ 459 (735)
T KOG3626|consen 418 YLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLS 459 (735)
T ss_pred HHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeeccc
Confidence 998 569999999999977766 5568889999999988654
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-09 Score=101.54 Aligned_cols=166 Identities=16% Similarity=-0.004 Sum_probs=114.4
Q ss_pred cccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhH-HHHHHHHHHHHHHHHH-h---cchh
Q 012910 259 VNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLF-MVITLAAMSIGHLIIA-S---GLPG 333 (453)
Q Consensus 259 ~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~-~~~~~~~~~i~~~~~~-~---~~~~ 333 (453)
...+|.+.++.|+|.++.+..... .+...+ .+++|.++||+..|+. +||+. +..+.++.++....+. . .+.+
T Consensus 8 ~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~-Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~ 84 (356)
T TIGR00901 8 GNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFF-GRRRSWLVLTQVLLLSLLLILSFLVPSTDLP 84 (356)
T ss_pred HhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCC-CccHHHHHHHHHHHHHHHHHHHcCCcchhHH
Confidence 445788889999999999998655 444444 8999999999954321 44443 4555555555544443 2 2222
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHH
Q 012910 334 ALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLS 413 (453)
Q Consensus 334 ~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 413 (453)
.+....++.+++.+...+...+++.|.+|+|+|+.+.|+...+..+|.. +++.+.+.+.+..+... ....+|+..
T Consensus 85 ~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~-~~~~l~~~l~~~~g~~~----~~~~~wr~~ 159 (356)
T TIGR00901 85 LLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGML-LSGSLALVLASPEFANT----GLITLWGYI 159 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHH-HHHHHHHHHhhhccccc----ccccccHHH
Confidence 3444445666777777788889999999999999999999999999985 68888888877655210 112348999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 012910 414 FFIMGSATLCGSLAAFGLF 432 (453)
Q Consensus 414 f~~~~~~~~~~~i~~~~~~ 432 (453)
|++.+++.++..+..++..
T Consensus 160 f~i~ai~~l~~~~~~~~~~ 178 (356)
T TIGR00901 160 FFWTALLILPGLLVTLFLA 178 (356)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9888887777665444333
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=7e-09 Score=101.09 Aligned_cols=142 Identities=17% Similarity=0.147 Sum_probs=99.5
Q ss_pred CCChhhhhHHH-----HHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchh--------HH
Q 012910 270 GYSSFETSSLI-----SLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPG--------AL 335 (453)
Q Consensus 270 g~s~~~~~~~~-----~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~--------~~ 335 (453)
+.++.+ +... +...++..++.++.|+++||+ +||+++..+.++.+++.++.. .++.. .+
T Consensus 56 ~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~------Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 128 (438)
T PRK09952 56 QVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL------GRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLL 128 (438)
T ss_pred CCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh------ccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 566553 3332 234455678888999999999 788888888888888887766 33332 35
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHH
Q 012910 336 YAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFF 415 (453)
Q Consensus 336 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~ 415 (453)
.+..++.|++.|..++....++.|.+|+++|+...+..+.+..+|.. +++.+...+....+.. .....+|+..|+
T Consensus 129 ~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~-l~~~~~~~l~~~~~~~----~~~~~gWr~~f~ 203 (438)
T PRK09952 129 VTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLL-LSTGLVSLISMMTTDE----QFLSWGWRIPFL 203 (438)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCHH----HhhccChHHHHH
Confidence 56778999999999999999999999999999999988888888875 5654555443221100 000112899998
Q ss_pred HHHHHHHH
Q 012910 416 IMGSATLC 423 (453)
Q Consensus 416 ~~~~~~~~ 423 (453)
+.++..++
T Consensus 204 ~~~~~~l~ 211 (438)
T PRK09952 204 FSIVLVLI 211 (438)
T ss_pred HHHHHHHH
Confidence 77665433
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-09 Score=98.63 Aligned_cols=117 Identities=22% Similarity=0.244 Sum_probs=99.7
Q ss_pred CCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHhcchhH-HHHHHHHHHHhhhh
Q 012910 270 GYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGA-LYAGSILVGVCYGS 348 (453)
Q Consensus 270 g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~l~g~~~g~ 348 (453)
+.+...+|++-+.+++...+.++.+|.++||+ |||.++.+++...++...+.+..+... +....++.|..-|-
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y------GRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn 137 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRY------GRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN 137 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhh------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc
Confidence 44667789999999999999999999999999 889999999999999888877444433 34447788877665
Q ss_pred hhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhhee
Q 012910 349 QWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYD 394 (453)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~ 394 (453)
.+...++++|++++|+|+.+++.++++.++|-. +||.++|++..
T Consensus 138 -l~v~rAiisdV~sek~r~l~ms~v~~a~~lGfi-lGPmIGgyla~ 181 (451)
T KOG2615|consen 138 -LSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFI-LGPMIGGYLAQ 181 (451)
T ss_pred -hHHHHHHHHhhcChhhccceeeeeehhhhcchh-hcchhhhHHHh
Confidence 466779999999999999999999999999985 79999999887
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-09 Score=118.37 Aligned_cols=177 Identities=12% Similarity=0.073 Sum_probs=123.3
Q ss_pred HHHhhhhHHHHHHHHHHhhhcchhhecccHHHh----hh-hcCC-ChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccc
Q 012910 233 LQAICTLEFWILSFAMACGMGSGLATVNNISQI----GG-SLGY-SSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKE 306 (453)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~g~-s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~ 306 (453)
+.++++++|+.+++..++...........++.+ .. +.+. +....++..+.+.+...+..++.|+++||+
T Consensus 5 ~~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~----- 79 (1140)
T PRK06814 5 LYLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY----- 79 (1140)
T ss_pred hhhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-----
Confidence 456788888887777766655433222222211 11 2222 224567778889999999999999999999
Q ss_pred cCchhHHHH----HHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhh
Q 012910 307 WARPLFMVI----TLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSY 382 (453)
Q Consensus 307 ~~r~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 382 (453)
+||+++.. ..+....+.+.+...+.+.+++..++.|++.+...+...+++.+.+++++++.+.|+.+.+..+|..
T Consensus 80 -~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~ 158 (1140)
T PRK06814 80 -DKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAIL 158 (1140)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHH
Confidence 55554322 1222222222223456778888899999999999999999999999999999999999999999995
Q ss_pred hhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHH
Q 012910 383 IFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAA 428 (453)
Q Consensus 383 i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~ 428 (453)
+||+++|++.+..+ |+..|.....+.+++.++.
T Consensus 159 -igp~l~g~l~~~~~------------~~~~~~~~~~~~~~~~~~~ 191 (1140)
T PRK06814 159 -LGTIIGGLATISGN------------FVILVALLMGIAVLGWLAS 191 (1140)
T ss_pred -HHHHHHHHHHhccc------------cHHHHHHHHHHHHHHHHHH
Confidence 79999999998766 7888744444444444333
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.5e-09 Score=101.82 Aligned_cols=145 Identities=18% Similarity=0.096 Sum_probs=104.1
Q ss_pred HHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHH-HHHH-----HHHHHHHhhhhhhhhhhhhhccccCchhHHH
Q 012910 241 FWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSL-ISLW-----SIWNFLGRFGAGYVSDYFLHVKEWARPLFMV 314 (453)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~-~~~~-----~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~ 314 (453)
....++..++...-...+....|.+.++++.++.+.+.. .+.. .+...++.++.|+++||+ +||+.+.
T Consensus 17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~------Grr~~l~ 90 (434)
T PRK15075 17 ILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV------GRRKGLI 90 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh------chHHHHH
Confidence 344555566665666666667788888888877664433 2222 222346889999999999 7788888
Q ss_pred HHHHHHHHHHHHHH-hcchh--------HHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhh
Q 012910 315 ITLAAMSIGHLIIA-SGLPG--------ALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFS 385 (453)
Q Consensus 315 ~~~~~~~i~~~~~~-~~~~~--------~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g 385 (453)
.+..+..++..+.. .++.. .+.+..++.|++.+...+....++.|.+|+++|+++.++.+....+|.. ++
T Consensus 91 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~-~g 169 (434)
T PRK15075 91 VTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVV-FA 169 (434)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHH-HH
Confidence 88888888777766 33332 2456678889999988888889999999999999999998877777764 45
Q ss_pred hhhhhhh
Q 012910 386 VRVVGYI 392 (453)
Q Consensus 386 ~~~~g~l 392 (453)
+.+++.+
T Consensus 170 ~~~g~~l 176 (434)
T PRK15075 170 ALLGYLL 176 (434)
T ss_pred HHHHHHH
Confidence 5555544
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.9e-09 Score=95.68 Aligned_cols=232 Identities=13% Similarity=-0.010 Sum_probs=138.2
Q ss_pred ccccchhHHhhcCCCccchhHHHHHH-HHhhhhcchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHH
Q 012910 32 FSIYSPALKTTQHYDQTTLDTVSVFK-DIGANTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYF 110 (453)
Q Consensus 32 ~~~~~~~~~~~~~~s~~~~~~i~~~~-~~~~~~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~ 110 (453)
.+++.-.+-+++|.+..|++.+.... .-..+++++.|.++||+| ||+..++-+++.+++++
T Consensus 53 QGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~G------------------rk~~cl~~cily~~scl 114 (354)
T PF05631_consen 53 QGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYG------------------RKKACLLFCILYSLSCL 114 (354)
T ss_pred hcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------------chHHHHHHHHHHHHHHH
Confidence 34555556678999999999554444 444457899999999999 99998888888888887
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHh-hh----cCC-Cccchhheec-ccCCC-----Cc---cc
Q 012910 111 LMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSV-RN----FPT-YSGTAVGIMK-GSDSD-----RT---SE 175 (453)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~-~~----~p~-~rg~~~g~~~-~~~~~-----~~---~~ 175 (453)
.. .. ++++.++++|++.|++....+.+--+... |+ +|+ ..+...+... ..+++ +. ..
T Consensus 115 ~k------~~--~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l 186 (354)
T PF05631_consen 115 TK------HS--SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVL 186 (354)
T ss_pred HH------hc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHH
Confidence 52 22 58999999999999999999888777654 43 231 1222222221 11222 00 00
Q ss_pred c--cccccCcccchhhhhhhhhc--ccccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhh
Q 012910 176 T--SFCEEDELTDDPHEMHAEKM--HVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACG 251 (453)
Q Consensus 176 ~--~~~~w~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (453)
. ...+-...|..-.....+.. +....+|+..+..+ .. +..+.....++.+.+||+.+.+.+...+.
T Consensus 187 ~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~--~~--------~~~~~~~~a~~~i~~d~ril~LG~~qslF 256 (354)
T PF05631_consen 187 ADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSS--SS--------SLSGSFREAWRAILSDPRILLLGLIQSLF 256 (354)
T ss_pred HHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCccc--cc--------chHHHHHHHHHHHHcCchhHHHHHHHHHH
Confidence 0 11223444443322222221 12222222211110 00 00001122445677889999999888888
Q ss_pred hcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhh
Q 012910 252 MGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDY 300 (453)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr 300 (453)
-++.+.+.....+.++..+ ....-|++++.+.++.++|+-+..++..+
T Consensus 257 E~smy~FVflWtPaL~~~~-~~~P~GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 257 EGSMYLFVFLWTPALDPDD-EELPLGLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred HHHHHHheeeeeceecCCC-CCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7776665554444444221 12357889999999999999888765543
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.6e-09 Score=98.14 Aligned_cols=176 Identities=16% Similarity=0.115 Sum_probs=118.3
Q ss_pred HHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHH
Q 012910 240 EFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAA 319 (453)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~ 319 (453)
++|.-.+...+.......+....+.+-+++|+|+.|.+++.++..+.+.+.|+..|.+.||+| .|+....+.++
T Consensus 15 ~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfG------gR~~~~~s~~l 88 (417)
T COG2223 15 NLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFG------GRKWTILSMLL 88 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccC------chHHHHHHHHH
Confidence 444444444444444444444444555788999999999999999999999999999999995 44445555555
Q ss_pred HHHHHHHHH----hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheec
Q 012910 320 MSIGHLIIA----SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDR 395 (453)
Q Consensus 320 ~~i~~~~~~----~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~ 395 (453)
..+-.+... .++.+.+++...+.|++ |+.++.....+++.||+|++|.+.|+.. .+++|.. +...+...+...
T Consensus 89 ~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~a-v~q~~~P~v~~~ 165 (417)
T COG2223 89 LLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVA-VAQLVAPLVAVA 165 (417)
T ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHH-HHHHHHHHHHHH
Confidence 554444433 22334666777777776 4557778889999999999999999987 6666664 344444444444
Q ss_pred cCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 012910 396 EASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFL 433 (453)
Q Consensus 396 ~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 433 (453)
.+. ..|+.+-.+.....++..+..++..+
T Consensus 166 ~g~---------~~w~~~~~i~~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 166 FGF---------LAWRNVAGIYVVALAIAAVLAWLGMN 194 (417)
T ss_pred Hhh---------HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 431 01677777777777776666655543
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-09 Score=104.46 Aligned_cols=147 Identities=18% Similarity=0.212 Sum_probs=126.8
Q ss_pred hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHh---cchhHHHHHHHHHHH
Q 012910 268 SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS---GLPGALYAGSILVGV 344 (453)
Q Consensus 268 ~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~l~g~ 344 (453)
++.+++++-+++++.+..+.+++.+..|++.||+ +-|+++..+.++.++..++... .+.+.+.+..++.|+
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~------G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl 140 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF------GARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGL 140 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc------CchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHH
Confidence 4588999999999999999999999999999999 6677788888888888877652 233456788899999
Q ss_pred hhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheec-cCCCCCCccccccchHHHHHHHHHHHHH
Q 012910 345 CYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDR-EASGEGNKCTGTHCFMLSFFIMGSATLC 423 (453)
Q Consensus 345 ~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~-~g~~~~~~~~~~~~~~~~f~~~~~~~~~ 423 (453)
+.|..+|.+..+..+..|+++|++..++...+..+|.. ++-++.|.+.+. .| |+.+|++.+++.++
T Consensus 141 ~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v-~~mp~sg~lc~s~~G------------W~sifY~~g~~g~i 207 (466)
T KOG2532|consen 141 GQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTI-ITMPVSGLLCESSLG------------WPSIFYVFGIVGLI 207 (466)
T ss_pred HHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHhccCCC------------CchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999996 566689999998 55 99999999999888
Q ss_pred HHHHHHHHhh
Q 012910 424 GSLAAFGLFL 433 (453)
Q Consensus 424 ~~i~~~~~~~ 433 (453)
..++..++..
T Consensus 208 ~~~~w~~~~~ 217 (466)
T KOG2532|consen 208 WFILWFLFYS 217 (466)
T ss_pred HHHHHHHHhc
Confidence 8766655554
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.7e-09 Score=101.60 Aligned_cols=301 Identities=12% Similarity=0.018 Sum_probs=176.1
Q ss_pred HhhhhcchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhh
Q 012910 59 IGANTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHG 138 (453)
Q Consensus 59 ~~~~~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g 138 (453)
...+.++..|.++||+| ||..+......+.+..+...+. .+|.++ +.|+.
T Consensus 74 ~~~i~s~~iG~lSD~~g------------------rk~~L~~~~~~~~l~~~~~~~~--------~~~~~~----~~~l~ 123 (463)
T KOG2816|consen 74 LTLISSPLIGALSDRYG------------------RKVVLLLPLFGTILPALCLLFQ--------GYWFFL----LLGLS 123 (463)
T ss_pred HHHHHHhhhHHhhhhhh------------------hhhhHHHHHHHHHHhHHHHHHH--------HHHHhh----hcccc
Confidence 33334588889999988 9999999888888887775443 334333 44543
Q ss_pred hh--hHhhhhhHhHhhhcC-CCccchhheecccCCC--Ccccccc------cccCcccchhhhhhh---hhcccccCCCC
Q 012910 139 MT--FFNTADVVTSVRNFP-TYSGTAVGIMKGSDSD--RTSETSF------CEEDELTDDPHEMHA---EKMHVRQDPVG 204 (453)
Q Consensus 139 ~~--~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~--~~~~~~~------~~w~~~~~~~~~~~~---~~~~l~~~~~~ 204 (453)
.+ ..+....++++|... ++|....|++...++. ...|... .+.-..|.+-..... .+.. ...|+.
T Consensus 124 g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~-~~l~Es 202 (463)
T KOG2816|consen 124 GGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYML-LFLPES 202 (463)
T ss_pred cchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh-hccccc
Confidence 33 345666777888875 8999999999775543 2233322 111122221111111 1111 112221
Q ss_pred cccCCCCCCCCCC---CCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhh-ecccHHHhhh-hcCCChhhhhHH
Q 012910 205 YHRLPSEPDVGTD---TNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLA-TVNNISQIGG-SLGYSSFETSSL 279 (453)
Q Consensus 205 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~g~s~~~~~~~ 279 (453)
..++..+..+..+ .........+......+.-.+|..+.++...++....... ....+..+.. .+++++.+.+..
T Consensus 203 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~ 282 (463)
T KOG2816|consen 203 LQEKERSDATLRELTPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDL 282 (463)
T ss_pred cCccccccccccccCCCcccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHH
Confidence 1111111000000 0000000001111111222334445544444443333222 2213344444 469999999999
Q ss_pred HHHHHHHHHHHhhhhh-hhhhhhhhccccCchhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhhhhhHHHHh
Q 012910 280 ISLWSIWNFLGRFGAG-YVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIAS 358 (453)
Q Consensus 280 ~~~~~i~~~ig~~~~G-~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~ 358 (453)
.+..++.+.+++++.. .+...+ +.+.++..++....+..+.+......+............+...+...+.++
T Consensus 283 ~~~~~~~~~i~~l~~~~~l~~~l------~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~~~~pa~~s~~s 356 (463)
T KOG2816|consen 283 LSLVSILGIISQLLLLPLLSSIL------GEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAGIVFPAIRAFAS 356 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------hhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhcchhHHHHhHHH
Confidence 9999999999998877 555566 444577888888888888887544444444444555556667888889999
Q ss_pred HhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccC
Q 012910 359 EIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREA 397 (453)
Q Consensus 359 ~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g 397 (453)
...+++++|++.++......+.+. ++|.+.+.++..+.
T Consensus 357 ~~v~~~e~g~v~~~is~i~~l~~~-~~~~~~~~i~~~t~ 394 (463)
T KOG2816|consen 357 ILVSPEEQGKVFGIISGIEGLSGV-VSPALYGNIFALTL 394 (463)
T ss_pred hhcccccccchhhHHHHHHHHhhh-hhHHHHHHHHHHHH
Confidence 999999999999999999988885 68888888766543
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.8e-09 Score=113.00 Aligned_cols=155 Identities=15% Similarity=0.091 Sum_probs=114.6
Q ss_pred HHhhhhHHHHHHHHHHhhhcchhhecccH-HHhhhhcCCC--hhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCch
Q 012910 234 QAICTLEFWILSFAMACGMGSGLATVNNI-SQIGGSLGYS--SFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARP 310 (453)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~s--~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~ 310 (453)
..++++.|+.+++..++...........+ +.+..+++.+ ....++..+++.++..++.+++|+++||+ +||
T Consensus 4 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~------grk 77 (1146)
T PRK08633 4 NLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF------SKN 77 (1146)
T ss_pred chhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc------cHH
Confidence 45677777777776666544443333323 3333344443 34467888899999999999999999999 667
Q ss_pred hHHHHHHHHHHHHHHHHH----hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhh
Q 012910 311 LFMVITLAAMSIGHLIIA----SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSV 386 (453)
Q Consensus 311 ~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~ 386 (453)
+++..+.++..+..++.. ..+.+.+++..++.|++.+...+...+++.|.+|+++|+++.|+...+..+|.. +++
T Consensus 78 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~-lg~ 156 (1146)
T PRK08633 78 RVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAIL-AGT 156 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHH-HHH
Confidence 777666554443333221 345566777888999999999999999999999999999999999999999985 799
Q ss_pred hhhhhheec
Q 012910 387 RVVGYIYDR 395 (453)
Q Consensus 387 ~~~g~l~~~ 395 (453)
.+++.+.+.
T Consensus 157 ~l~~~l~~~ 165 (1146)
T PRK08633 157 ALFSFLFES 165 (1146)
T ss_pred HHHHHHHHh
Confidence 899988775
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-08 Score=98.89 Aligned_cols=154 Identities=18% Similarity=0.209 Sum_probs=118.4
Q ss_pred hhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHH-HHHHhcchhHHHHHHHHHHHh
Q 012910 267 GSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGH-LIIASGLPGALYAGSILVGVC 345 (453)
Q Consensus 267 ~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~l~g~~ 345 (453)
++.++...+-+...+++.++.+++.+.++.+.||+ +..+.+....++..+.. +.....+.+.+.+..++.|+.
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~------~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~ 147 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF------PLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLF 147 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC------ChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 56678888999999999999999999999999999 53333333333322222 223356777888889999999
Q ss_pred hhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHH
Q 012910 346 YGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGS 425 (453)
Q Consensus 346 ~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 425 (453)
.+..+|....++...+++++++..+|+.+....+|++ +|.++...+....+. .+..+|++.|++-+++.++..
T Consensus 148 es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i-~ggliA~g~~~~~~~------~~~~gW~~~FiI~G~i~~~~g 220 (495)
T KOG2533|consen 148 ESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNI-FGGLIAYGVFKLNGS------GGLAGWRWLFIIEGVITLVLG 220 (495)
T ss_pred hcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhH-HHHHHHHHhhhhcCC------CCcCCceeehhHHHHHHHHHH
Confidence 9999999999999999999999999999999999995 677666665443322 123449999999999888877
Q ss_pred HHHHHHhh
Q 012910 426 LAAFGLFL 433 (453)
Q Consensus 426 i~~~~~~~ 433 (453)
++.++..+
T Consensus 221 i~~f~~lp 228 (495)
T KOG2533|consen 221 IVVFFFLP 228 (495)
T ss_pred heEEEEec
Confidence 66665544
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.9e-08 Score=98.77 Aligned_cols=135 Identities=21% Similarity=0.251 Sum_probs=112.3
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhh
Q 012910 275 ETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLM 353 (453)
Q Consensus 275 ~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~ 353 (453)
+.+++.+...+++.++.++.|+++|++ |||..+..+.++..++.++.. ..+...+.+..++.|++.|......
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~------GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~ 163 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRI------GRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLA 163 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcc
Confidence 448999999999999999999999999 788889999999999988877 5566788899999999999999999
Q ss_pred HHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHH
Q 012910 354 PTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLA 427 (453)
Q Consensus 354 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~ 427 (453)
+.+++|..|++.||...+.......+|.. ++ .+.+...++.. .+|+..+.+..+.+++..+.
T Consensus 164 piy~sEiap~~~RG~l~~~~~l~~~~Gi~-~~-~~~~~~~~~~~----------~~Wr~~~~~~~i~~~~~~~~ 225 (513)
T KOG0254|consen 164 PVYISEIAPAHIRGTLVSLYQLFITIGIL-LG-YCINYGTSKVY----------AGWRIPLGLALIPAVILALG 225 (513)
T ss_pred hhhHhhcCChhhhHHHHHHHHHHHHHHHH-HH-HHHhhhhccCC----------ccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988887764 45 34555554430 11898888777777776665
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.8e-09 Score=102.40 Aligned_cols=168 Identities=12% Similarity=0.042 Sum_probs=109.7
Q ss_pred ecccHHHhhh-hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcch---
Q 012910 258 TVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLP--- 332 (453)
Q Consensus 258 ~~~~~~~~~~-~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~--- 332 (453)
...+++.++. +.|+++.+++.+.++..+...+..++.|+++||.++|++ +||+.+..+.....++.+++. .++.
T Consensus 18 ~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~G-rrr~~i~~~~~~~~i~~~~~~~~~~~~~~ 96 (437)
T TIGR00792 18 VSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWG-KFRPWLLIGAIPFSIVLVLLFTTPDFSAT 96 (437)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCC-CcchhHHHhHHHHHHHHHHHHhCCCCCcc
Confidence 3445566665 579999999999999999999999999999999876653 345556666666666555544 2211
Q ss_pred ---hHHHHHHHHHHHhhhhhhhhhHHHHhHhh-ccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCcccccc
Q 012910 333 ---GALYAGSILVGVCYGSQWSLMPTIASEIF-GVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTH 408 (453)
Q Consensus 333 ---~~~~~~~~l~g~~~g~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~ 408 (453)
....+..++.+.+++.......++..|.. ++++|++..++.+....+|+.+ ++.+.+.+....+.. ....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l-~~~~~~~l~~~~~~~-----~~~~ 170 (437)
T TIGR00792 97 GKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLL-VAVIVLPLVSYFGGG-----DDKF 170 (437)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCC-----cccc
Confidence 12334445567777766666667778876 4578999988888777777643 333444443322110 0012
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHh
Q 012910 409 CFMLSFFIMGSATLCGSLAAFGLF 432 (453)
Q Consensus 409 ~~~~~f~~~~~~~~~~~i~~~~~~ 432 (453)
+|+..+.+.+++.++..++.....
T Consensus 171 g~~~~~~i~~~l~~~~~~~~~~~~ 194 (437)
T TIGR00792 171 GWFMFALVLALIGVVSLIICFFGT 194 (437)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCC
Confidence 388888888877776665544433
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-08 Score=101.03 Aligned_cols=138 Identities=19% Similarity=0.091 Sum_probs=119.0
Q ss_pred hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHhh
Q 012910 268 SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCY 346 (453)
Q Consensus 268 ~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~g~~~ 346 (453)
....+.....+..+++.++..+|.+++|.++||+ |||.++..+.++..++.+..+ .++.+...+..++.|++.
T Consensus 112 ~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~------GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~ 185 (521)
T KOG0255|consen 112 LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF------GRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFG 185 (521)
T ss_pred eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc------ccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhc
Confidence 3467777888999999999999999999999998 889999999999888887766 667778888999999999
Q ss_pred hhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHH
Q 012910 347 GSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSL 426 (453)
Q Consensus 347 g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i 426 (453)
++.......++.|.+++++|+.+..+ ......++. +++...+++... |++.+++.....++.++
T Consensus 186 ~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~-~~~~~~a~~~~~--------------Wr~~~~~~~~~~~~~~~ 249 (521)
T KOG0255|consen 186 SGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGL-MLPAGAAYITRD--------------WRWLFWIISIPSGLFLL 249 (521)
T ss_pred cchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHH-HHHHHHHHHHhh--------------HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 666666664 567778888772 99999998888887765
Q ss_pred H
Q 012910 427 A 427 (453)
Q Consensus 427 ~ 427 (453)
+
T Consensus 250 ~ 250 (521)
T KOG0255|consen 250 L 250 (521)
T ss_pred H
Confidence 5
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.5e-07 Score=87.88 Aligned_cols=297 Identities=10% Similarity=-0.041 Sum_probs=173.6
Q ss_pred HHHHHHHhhhhcchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 012910 53 VSVFKDIGANTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFM 132 (453)
Q Consensus 53 i~~~~~~~~~~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 132 (453)
....+....+.+++++.+.|+.| +|..+.++...+..-.+.+.+ +|-+.+++..
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~------------------~K~~lv~ga~~y~~f~~gfl~--------~N~y~~yfss 109 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLG------------------PKWALVIGATCYAAFPLGFLF--------PNSYYLYFSS 109 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhh------------------HHHHHHHHhHHHHHHHHHHHh--------cchHHHHHHH
Confidence 34555555566789999999999 999999998888776665333 4778888999
Q ss_pred HHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccC------C-CCcc------c---ccccccC-cc----cchhhh
Q 012910 133 LFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSD------S-DRTS------E---TSFCEED-EL----TDDPHE 190 (453)
Q Consensus 133 ~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~------~-~~~~------~---~~~~~w~-~~----~~~~~~ 190 (453)
.+.|+|.+..+..--.++.++.+ +++.+..++.-+.. | +-.. . ....+.+ .. +..+..
T Consensus 110 allG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 189 (461)
T KOG3098|consen 110 ALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEI 189 (461)
T ss_pred HHhhhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHH
Confidence 99999999999988889999985 66666666552211 1 1000 0 0001111 00 111100
Q ss_pred ---hhhhh--cccccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHh
Q 012910 191 ---MHAEK--MHVRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQI 265 (453)
Q Consensus 191 ---~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (453)
..+.. ..+........+.++...+ .+.. + ....+..+...+++++++..++...++........+....|..
T Consensus 190 ~~~~~v~~~~~~l~~i~~~~~p~~~~~~~-~~~~-~-~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~ 266 (461)
T KOG3098|consen 190 KVLFGVLLAISVLSIINFDFLPSKDVVNC-KSSS-E-TSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTC 266 (461)
T ss_pred HHHHHHHHHHHHHHhhheeecCccchhhh-hhhc-c-ccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchh
Confidence 00000 0010000111111100000 0000 0 0000111233456778888777776666555444444545554
Q ss_pred hh---hcCCC-hhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH--hc--c------
Q 012910 266 GG---SLGYS-SFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA--SG--L------ 331 (453)
Q Consensus 266 ~~---~~g~s-~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~--~~--~------ 331 (453)
.. ..+.+ ..-.+......+++..++....+.+++|.++. +|+..+.++..+..+..++.. .+ .
T Consensus 267 i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~f---g~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~ 343 (461)
T KOG3098|consen 267 ISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGF---GRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTD 343 (461)
T ss_pred hhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhc---ccCcchhHHHHHHHHHHHHHhccccccCCCCCCc
Confidence 43 22332 23345555666777777888888888888655 677777777766666665543 11 1
Q ss_pred ---------hhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhh
Q 012910 332 ---------PGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSY 382 (453)
Q Consensus 332 ---------~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 382 (453)
.....+..++.|++-..........+.+..| +++..+..+.-.-..+++.
T Consensus 344 ~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~ 402 (461)
T KOG3098|consen 344 SPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASC 402 (461)
T ss_pred ccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHH
Confidence 1244566678899988888888999999985 8888888887766666663
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.7e-08 Score=96.44 Aligned_cols=172 Identities=17% Similarity=0.138 Sum_probs=135.4
Q ss_pred HHHHHHHHhhhcchhhec----ccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHH
Q 012910 242 WILSFAMACGMGSGLATV----NNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITL 317 (453)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~ 317 (453)
|...+..++..+...++. ...+.+.++++.+..+++++.++......+..++.+.+.||+ +.|.+.+.+.
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf------g~R~v~i~G~ 118 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF------GCRTVMIAGG 118 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc------CchHHHHHHH
Confidence 555555555444444333 334555567788888899999999999999999999999999 7888999999
Q ss_pred HHHHHHHHHHH-hcchhHHHH-HHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheec
Q 012910 318 AAMSIGHLIIA-SGLPGALYA-GSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDR 395 (453)
Q Consensus 318 ~~~~i~~~~~~-~~~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~ 395 (453)
++..+++++.. ..+.+.+++ ..++.|+|.+..+......+..+|. ++|+.+.|+...+..+|.++++ ++.-.+.+.
T Consensus 119 ~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~-~l~~~l~~~ 196 (509)
T KOG2504|consen 119 LVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFP-PLLKYLLSK 196 (509)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHH-HHHHHHHHH
Confidence 99999998877 445555554 4467789999988888888888887 8999999999999999998654 478888898
Q ss_pred cCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 012910 396 EASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFL 433 (453)
Q Consensus 396 ~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 433 (453)
.| |+.++++.+.+.+-.++.....++
T Consensus 197 ~G------------~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 197 YG------------WRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred hC------------cHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88 899999998888766655555544
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.4e-08 Score=94.71 Aligned_cols=130 Identities=21% Similarity=0.223 Sum_probs=92.3
Q ss_pred HHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHh-cchh--------HHHHHHHHHHHhhhhhhhhhHH
Q 012910 285 IWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS-GLPG--------ALYAGSILVGVCYGSQWSLMPT 355 (453)
Q Consensus 285 i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~~~~--------~~~~~~~l~g~~~g~~~~~~~~ 355 (453)
+...++.++.|+++||+ +||+++..+.++..++.++... ++.. .+.+..++.|++.+...+....
T Consensus 46 ~~~~i~~~~~G~l~dr~------g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~ 119 (394)
T TIGR00883 46 LARPLGAIVFGHFGDRI------GRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAAL 119 (394)
T ss_pred HHhhhHHHHhhhhhhhh------hhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHH
Confidence 34457889999999999 7778888888888877776652 3321 2456667889988888888999
Q ss_pred HHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHH
Q 012910 356 IASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGS 425 (453)
Q Consensus 356 ~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 425 (453)
++.|.+++++|+...+..+.+..+|.. +++.+.+.+.+..+.. .....+|+..|++.+.+.+++.
T Consensus 120 ~~~~~~~~~~r~~~~~~~~~~~~~G~~-i~~~~~~~~~~~~~~~----~~~~~~w~~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 120 YLAEYAPPGKRGFYGSFQQVGAPVGLL-LAALTVLLLSYLLGDD----ALLEWGWRIPFLVSAVLVLIGL 184 (394)
T ss_pred HhhhcCCcccchHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHH----HhhccchHHHHHHHHHHHHHHH
Confidence 999999999999999999988888885 5776655543211100 0001128888887766555544
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.7e-08 Score=92.05 Aligned_cols=171 Identities=11% Similarity=-0.033 Sum_probs=104.5
Q ss_pred HHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHH--HHHHHHHHHHHhhhh-hhhhhhhhhccccCchhHHHHHH-H
Q 012910 243 ILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSL--ISLWSIWNFLGRFGA-GYVSDYFLHVKEWARPLFMVITL-A 318 (453)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~--~~~~~i~~~ig~~~~-G~l~Dr~~~~~~~~r~~~~~~~~-~ 318 (453)
.+...++............+|.++++.|.|.++.|.. ..+..+...+..++. ++.+||.++| +..++.. .
T Consensus 5 ~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r------~~~i~~~~~ 78 (390)
T TIGR02718 5 TLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRR------RSWVLPMQC 78 (390)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcc------hhHHHHHHH
Confidence 3444445554555566678999999999999999997 456677777777777 4467887543 2222222 2
Q ss_pred HHHHHHHHHH---hc-c-hhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhhe
Q 012910 319 AMSIGHLIIA---SG-L-PGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIY 393 (453)
Q Consensus 319 ~~~i~~~~~~---~~-~-~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~ 393 (453)
+.......+. .. + ..+......+..+......+....+..|..++++++...+....+..+|.. +++...+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~-~g~~~~~~l~ 157 (390)
T TIGR02718 79 LVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFF-GGGAGTLVLF 157 (390)
T ss_pred HHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 1121121111 11 1 112222233333444444455555666766666667666666666677775 5777777888
Q ss_pred eccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHh
Q 012910 394 DREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLF 432 (453)
Q Consensus 394 ~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~ 432 (453)
++.+ |+..|++.+++.++..+..++..
T Consensus 158 ~~~g------------w~~~f~~~a~l~~~~~~~~~~~~ 184 (390)
T TIGR02718 158 GKFG------------QRPAFLLVACVPLASLVCVLWLK 184 (390)
T ss_pred HHhC------------HHHHHHHHHHHHHHHHHHHHHcC
Confidence 8877 89999999988877666554443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-08 Score=95.40 Aligned_cols=176 Identities=18% Similarity=0.218 Sum_probs=102.8
Q ss_pred hhhhHHHHHHHHHHhhhcchhhecccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHH
Q 012910 236 ICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMV 314 (453)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~ 314 (453)
.|++++|.+...+++..+.......+++.++++ .|+|.++.|.+.+...+...+.+++.|.++||++.|| +.+..
T Consensus 4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK----~Ll~~ 79 (412)
T PF01306_consen 4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKK----HLLWF 79 (412)
T ss_dssp CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCS----HHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhH----HHHHH
Confidence 467889988888888888877778888999986 7999999999999999999999999999999997542 22222
Q ss_pred HHHHHHHHHH-HHHHh-cc-hhHHHHHHH----HHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhh
Q 012910 315 ITLAAMSIGH-LIIAS-GL-PGALYAGSI----LVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVR 387 (453)
Q Consensus 315 ~~~~~~~i~~-~~~~~-~~-~~~~~~~~~----l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~ 387 (453)
+..++...+. +.+.. +- ....++... .+++.+....|..-+++.+.. ++.+.-+|=.-+.+++|-. ++..
T Consensus 80 i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~a-i~s~ 156 (412)
T PF01306_consen 80 IAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFA-IASL 156 (412)
T ss_dssp HHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHH-HHHH
Confidence 2222222222 22111 00 011222222 233344444444434333322 2334445555566666664 4666
Q ss_pred hhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 012910 388 VVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGL 431 (453)
Q Consensus 388 ~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~ 431 (453)
++|.+.+... +..|++..+..++..++.+..
T Consensus 157 ~~G~L~~i~p-------------~~~fwi~s~~~~il~lll~~~ 187 (412)
T PF01306_consen 157 LAGILFNINP-------------NIIFWIASAAAIILLLLLLLL 187 (412)
T ss_dssp HHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHSS
T ss_pred HhheeeeeCc-------------cHHHHHHHHHHHHHHHHHHHc
Confidence 7888887542 566776655544444333333
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.2e-07 Score=89.91 Aligned_cols=161 Identities=15% Similarity=0.112 Sum_probs=97.9
Q ss_pred HHHHHHhhhcchhhecccHHHhhh-hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHH
Q 012910 244 LSFAMACGMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSI 322 (453)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i 322 (453)
+....++.+.........++.+++ +.|++..+.|++.+...++..++++++|+++||++ +||+++.++.++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g-----~~r~~~~~~~~~~~~ 81 (418)
T TIGR00889 7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWL-----SAQKVYAVCHFAGAL 81 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHH
Confidence 334444554554455556666665 57999999999999999999999999999999995 335566666666655
Q ss_pred HHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHh--------hccccccchhhhhhhhhhhhhhhhhhhhhhhhe
Q 012910 323 GHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEI--------FGVLQMGTIFNTITIANPVGSYIFSVRVVGYIY 393 (453)
Q Consensus 323 ~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~--------~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~ 393 (453)
...+.. .++.+.+.+..++.+++.+...+...+...+. .....+.+..| .+|. +++|.+.|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~-~ig~~l~g~l- 153 (418)
T TIGR00889 82 LLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGF-IAAMWAVSLL- 153 (418)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHH-HHHHHHHHHh-
Confidence 555544 34455555666667776665555444432222 22223344444 3454 3577677766
Q ss_pred eccCCCCCCccccccchHHHHHHHHHHHHHHHHHHH
Q 012910 394 DREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAF 429 (453)
Q Consensus 394 ~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~ 429 (453)
+... ...+|++.+++.++..++.+
T Consensus 154 ~~~~------------~~~~f~~~~~~~~~~~~~~~ 177 (418)
T TIGR00889 154 DIEL------------SNIQLYITAGSSALLGVFAL 177 (418)
T ss_pred cccc------------hhHHHHHHHHHHHHHHHHHh
Confidence 2221 13356666666655554433
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.74 E-value=2e-06 Score=80.47 Aligned_cols=330 Identities=12% Similarity=0.061 Sum_probs=187.7
Q ss_pred cccccchhHHhh-cCCCccchh-HHHHHHHHhhh-hcchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHH
Q 012910 31 TFSIYSPALKTT-QHYDQTTLD-TVSVFKDIGAN-TGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFA 107 (453)
Q Consensus 31 ~~~~~~~~~~~~-~~~s~~~~~-~i~~~~~~~~~-~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~ 107 (453)
+=+-+.|.+.+. .|++..|+. -+.-...-.++ ..++...+.|..+ .|++++++.+...+
T Consensus 22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~------------------Ykpviil~~~~~i~ 83 (412)
T PF01770_consen 22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLR------------------YKPVIILQALSYII 83 (412)
T ss_pred CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh------------------hhHHHHHHHHHHHH
Confidence 334555667665 899999988 34333333333 3478999999999 99999999988888
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCC--------Ccccccc
Q 012910 108 GYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSD--------RTSETSF 178 (453)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~--------~~~~~~~ 178 (453)
...++.+. ++...+-+..+.-|++.+. ..+-.+++-...| ++--++.+...+..-+ +.....
T Consensus 84 t~~lll~~-------~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs- 154 (412)
T PF01770_consen 84 TWLLLLFG-------TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS- 154 (412)
T ss_pred HHHHHHHH-------CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 88876665 6999999999999999885 4455566655554 4444554443222111 111111
Q ss_pred cccCcccch---h-hhh--hhh-hcccccCCCCc--ccCC--------CCCC--CCCCCCc-CC-cCCCCC---------
Q 012910 179 CEEDELTDD---P-HEM--HAE-KMHVRQDPVGY--HRLP--------SEPD--VGTDTND-AT-TSLWGG--------- 228 (453)
Q Consensus 179 ~~w~~~~~~---~-~~~--~~~-~~~l~~~~~~~--~~~~--------~~~~--~~~~~~~-~~-~~~~~~--------- 228 (453)
.++...+.. - ... ..+ ...++.++... ++++ .+.+ ++.++.+ +. ++....
T Consensus 155 ~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 234 (412)
T PF01770_consen 155 FGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLR 234 (412)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHH
Confidence 222221111 1 111 111 11133322110 0000 0000 0000000 00 000000
Q ss_pred --CccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhhc---CCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 012910 229 --DLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSL---GYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLH 303 (453)
Q Consensus 229 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~ 303 (453)
..++++..++|.++...+...+.......+.++...+.++. +-+..-.|.+-+...+.+.++.+..|++..++.+
T Consensus 235 ~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~ 314 (412)
T PF01770_consen 235 LLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDR 314 (412)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHH
Confidence 12334455677777766666666666666666666666655 3344456777788888888889999998555532
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhh
Q 012910 304 VKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSY 382 (453)
Q Consensus 304 ~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 382 (453)
. + ...+....++.+..+++.. .++.+..++..++++..+....+.....++.....|..|..+|+.++...+-.
T Consensus 315 ~---~-~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQ- 389 (412)
T PF01770_consen 315 W---G-ELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQ- 389 (412)
T ss_pred H---H-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHH-
Confidence 1 1 2333334444444444444 56677788888888888887777777777777777888888888765443333
Q ss_pred hhhhhhhhhheec
Q 012910 383 IFSVRVVGYIYDR 395 (453)
Q Consensus 383 i~g~~~~g~l~~~ 395 (453)
..+.-.+.|.
T Consensus 390 ---tilT~iV~d~ 399 (412)
T PF01770_consen 390 ---TILTLIVVDK 399 (412)
T ss_pred ---HheEEEEEcC
Confidence 3344455553
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.5e-07 Score=88.30 Aligned_cols=131 Identities=17% Similarity=0.139 Sum_probs=90.1
Q ss_pred HHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHH
Q 012910 244 LSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIG 323 (453)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~ 323 (453)
+...+++.+.....+..+++.++++.|+|..|.|.+.+...+..+++.+++|+++||.++ +++.+.+..++..+.
T Consensus 7 Ls~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~-----~~~~l~~~~l~~~~~ 81 (400)
T PF03825_consen 7 LSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGS-----AKRILALLSLLSALA 81 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-----HHHHHHHHHHHHHHH
Confidence 334444444444556677899999999999999999999999999999999999999863 445555555555554
Q ss_pred HHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhh
Q 012910 324 HLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGS 381 (453)
Q Consensus 324 ~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 381 (453)
.+... .++.+.+.+...+..+.+....|...++..+..+ +++.-+|-.-+.+++|=
T Consensus 82 ~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf 138 (400)
T PF03825_consen 82 LLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGF 138 (400)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHH
Confidence 44444 4455556666666777777777777777777664 33444554444444443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.5e-07 Score=83.56 Aligned_cols=154 Identities=16% Similarity=0.116 Sum_probs=127.9
Q ss_pred cccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHhcchhHHHHH
Q 012910 259 VNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAG 338 (453)
Q Consensus 259 ~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 338 (453)
-..++.+-+++|.|.+.++++.++.-++-.+.+++..++..|+ +....+..++++..++..+=...+...++..
T Consensus 32 gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~------g~er~l~~~Llli~~G~~iR~~~~~~~L~~g 105 (395)
T COG2807 32 GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF------GEERSLFLALLLIAAGILIRSLGGLPLLFLG 105 (395)
T ss_pred hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH------hhHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 3345555567899999999999999999999999999999999 5666777888888888877665566678888
Q ss_pred HHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHH
Q 012910 339 SILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMG 418 (453)
Q Consensus 339 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~ 418 (453)
..+.|.+.+......|..+.+.|| ++.+..+|+..+...+++. +++.+.-.+.++.++ |+..+.+.+
T Consensus 106 t~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aa-Laa~lavpla~~~~g-----------W~~aL~~WA 172 (395)
T COG2807 106 TLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAA-LAAALAVPLAQHSGG-----------WRGALGFWA 172 (395)
T ss_pred HHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHH-HHhhhhhHHHHhhcc-----------HHHHHHHHH
Confidence 899999999999999999999999 8889999999988888885 577677777777644 999999999
Q ss_pred HHHHHHHHHHHHH
Q 012910 419 SATLCGSLAAFGL 431 (453)
Q Consensus 419 ~~~~~~~i~~~~~ 431 (453)
...++++++.+..
T Consensus 173 l~allAl~~WlPq 185 (395)
T COG2807 173 LLALLALLIWLPQ 185 (395)
T ss_pred HHHHHHHHHHhhh
Confidence 9988887554433
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.2e-07 Score=89.16 Aligned_cols=138 Identities=18% Similarity=0.217 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH----hcchhHHHHHHHHHHHhhhhhhhh
Q 012910 277 SSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA----SGLPGALYAGSILVGVCYGSQWSL 352 (453)
Q Consensus 277 ~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~l~g~~~g~~~~~ 352 (453)
+...+.+.+++++|.+..|+++||+ |||..+.+..++..++.++.. .+....+.+..++.|+..|.....
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~------GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~ 136 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRF------GRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGL 136 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh------cchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHH
Confidence 4567889999999999999999999 667666666666655555543 455567788899999999999999
Q ss_pred hHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhh-hhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 012910 353 MPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRV-VGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGL 431 (453)
Q Consensus 353 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~-~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~ 431 (453)
.+.++.|..|++.||....+..++..+|.. ++..+ .-.+.+... .|.+.+.+..+..++..+...++
T Consensus 137 ~pmyl~E~sP~~~RG~~g~~~~~~~~~g~l-l~~~~~l~~ilGt~~-----------~W~~l~~~~~i~~~~~l~~l~~~ 204 (485)
T KOG0569|consen 137 VPMYLTEISPKNLRGALGTLLQIGVVIGIL-LGQVLGLPSLLGTED-----------LWPYLLAFPLIPALLQLALLPFL 204 (485)
T ss_pred HHHHHhhcChhhhccHHHHHHHHHHHHHHH-HHHHHccHHhcCCCc-----------chHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999998888888888875 34322 222333222 27777777777777776555544
Q ss_pred h
Q 012910 432 F 432 (453)
Q Consensus 432 ~ 432 (453)
.
T Consensus 205 P 205 (485)
T KOG0569|consen 205 P 205 (485)
T ss_pred C
Confidence 3
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.8e-07 Score=83.63 Aligned_cols=166 Identities=11% Similarity=0.051 Sum_probs=126.6
Q ss_pred ccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH----hcchhHH
Q 012910 260 NNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA----SGLPGAL 335 (453)
Q Consensus 260 ~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~----~~~~~~~ 335 (453)
..+|.+-+.++++..+++++...+..+..+..+..|++.+|+ ++|.-+..++.+++++..++. ..+....
T Consensus 34 iLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~------gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~F 107 (422)
T COG0738 34 ILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL------GYKAGIVLGLLLYAVGAALFWPAASSKSYGFF 107 (422)
T ss_pred hhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh------hhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 345555566799999999999999999999999999999999 677778999999999999885 2333456
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCC---CCCC----cccccc
Q 012910 336 YAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREAS---GEGN----KCTGTH 408 (453)
Q Consensus 336 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~---~~~~----~~~~~~ 408 (453)
.+..++.+.|.+...+..++++....+++....-.++....+.+|+. .+|++++.+.++... ...+ +.....
T Consensus 108 L~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~-~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~ 186 (422)
T COG0738 108 LVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAI-LGPLLGSSLILSGVALTMSAAQILAIKGADAS 186 (422)
T ss_pred HHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHH-HHHHHHHHHHHhhhhhccCHHHHHHHHHHHHH
Confidence 67778899999999999999999999988888889999999999996 799999988874100 0000 000112
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHh
Q 012910 409 CFMLSFFIMGSATLCGSLAAFGLF 432 (453)
Q Consensus 409 ~~~~~f~~~~~~~~~~~i~~~~~~ 432 (453)
.++.+|..++...++..+.....+
T Consensus 187 ~v~~pYl~~~~~lvll~v~~~~~k 210 (422)
T COG0738 187 SVQFPYLILAGLLVLLAVLILLSK 210 (422)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcc
Confidence 266777777766666554444433
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.9e-07 Score=87.66 Aligned_cols=189 Identities=10% Similarity=-0.016 Sum_probs=128.8
Q ss_pred HHHHHHHHHhhhcchhhecccHHHhhhh--cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHH
Q 012910 241 FWILSFAMACGMGSGLATVNNISQIGGS--LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLA 318 (453)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~ 318 (453)
.|+..+..++.......+....-+|+++ .+-+.+..|+..+...++..+++++.|+.+.|.+ .-++.++.+.+
T Consensus 36 i~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~-----~~k~Pli~s~i 110 (488)
T KOG2325|consen 36 IYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTG-----SVKKPLIVSFL 110 (488)
T ss_pred HHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccC-----CcccCHHHHHH
Confidence 3444455555544444444445566665 6888889999999999999999999999999985 23666788888
Q ss_pred HHHHHHHHHH-----hc-chhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhh
Q 012910 319 AMSIGHLIIA-----SG-LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYI 392 (453)
Q Consensus 319 ~~~i~~~~~~-----~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l 392 (453)
++.++.++.. .+ ..+.++++.++.|++.+. ....-.++++..-.++|.++.+..+.+..+|.. +||.+...+
T Consensus 111 i~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~i-lGp~~q~~f 188 (488)
T KOG2325|consen 111 IAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGII-LGPTIQLAF 188 (488)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHH-HhHHHHHHH
Confidence 8888888873 22 345677888898888765 456678888877778888888888776666663 566433322
Q ss_pred eeccCCCCCCcc--ccccchHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 012910 393 YDREASGEGNKC--TGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKR 437 (453)
Q Consensus 393 ~~~~g~~~~~~~--~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~ 437 (453)
. -.+...-..- ..-+.|..+-++++++.++.+++..+..+|..+
T Consensus 189 ~-~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 189 T-PLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred h-hhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 2 1121000000 123458888899999999988877776665443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.7e-08 Score=93.36 Aligned_cols=167 Identities=9% Similarity=0.022 Sum_probs=102.6
Q ss_pred ecccHHHhhh-hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcc----
Q 012910 258 TVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGL---- 331 (453)
Q Consensus 258 ~~~~~~~~~~-~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~---- 331 (453)
...+++.++. ..|+|+.+++.+.++.-+...+..|+.|+++||.+.|.+ +||+.+..+.+..++...+.. .++
T Consensus 28 ~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~G-rrrp~il~~~~~~~i~~~l~f~~p~~~~~ 106 (444)
T PRK09669 28 VMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHG-QFRPYLLWFAIPFGVVCLLTFYTPDFGAT 106 (444)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCC-CcchhHHHHHHHHHHHHHHHHhCCCCCcc
Confidence 3455666665 579999999999999999999999999999999876653 335555555555555554432 221
Q ss_pred --hhHHHHHHHHHHHhhhhhhhhhHHHHhHhh-ccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCcccccc
Q 012910 332 --PGALYAGSILVGVCYGSQWSLMPTIASEIF-GVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTH 408 (453)
Q Consensus 332 --~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~ 408 (453)
.....+...+.+.++........++.+|.. ++++|.+..+.-.....+|+. +++.+...+....+.. ....
T Consensus 107 ~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~-i~~~~~~pl~~~~~~~-----~~~~ 180 (444)
T PRK09669 107 GKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGL-IVSVIALPLVDILGKG-----DEQK 180 (444)
T ss_pred hHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCC-----chhh
Confidence 122333444556666666666678888887 446788777776666666654 3333333333222210 0012
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 012910 409 CFMLSFFIMGSATLCGSLAAFGL 431 (453)
Q Consensus 409 ~~~~~f~~~~~~~~~~~i~~~~~ 431 (453)
+|+..+.+.+++..+..++.++.
T Consensus 181 g~~~~~~i~~ii~~v~~~~~~~~ 203 (444)
T PRK09669 181 GYFYAMMVMGLLGVVLFFCCFFM 203 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCC
Confidence 37777777776666655444433
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-06 Score=76.91 Aligned_cols=131 Identities=17% Similarity=0.094 Sum_probs=94.2
Q ss_pred hcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH--h
Q 012910 252 MGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA--S 329 (453)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~--~ 329 (453)
.+..+.+..+.|.+-+.+|+|.+|...+.....++..+| ++.|.+.|++ +.+.++.++.+...+++.+.. .
T Consensus 15 ~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~------gp~~~l~iG~~~~~~GY~~~~l~~ 87 (250)
T PF06813_consen 15 SGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF------GPWVVLLIGAVLGFVGYGLLWLAV 87 (250)
T ss_pred cCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc------chHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666667777788999999999999999998875 8889999999 788888899999888887754 1
Q ss_pred ----c--chhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhh
Q 012910 330 ----G--LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVG 390 (453)
Q Consensus 330 ----~--~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g 390 (453)
+ +.+.+.+...+.+.+.............+.|| ++||++.|+.-...++++.++.....+
T Consensus 88 ~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~ 153 (250)
T PF06813_consen 88 SGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSA 153 (250)
T ss_pred hCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHH
Confidence 1 12233333334444444444444455667888 789999999998888888776653333
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.9e-07 Score=91.98 Aligned_cols=128 Identities=11% Similarity=0.023 Sum_probs=90.0
Q ss_pred chhhecccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHh-c-
Q 012910 254 SGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS-G- 330 (453)
Q Consensus 254 ~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~- 330 (453)
....+..+++.|+.+ .|+++..+|.++.+.-+...+..|+.|+++||...|.+ +||+.+..+.+..++++.++.. +
T Consensus 21 ~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~G-rrrp~il~g~i~~~i~~~llf~~p~ 99 (473)
T PRK10429 21 AIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWG-KFKPWILIGTLANSVVLFLLFSAHL 99 (473)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCC-CcchhHhhhhHHHHHHHHHHHcCCC
Confidence 333445566777765 59999999999999999999999999999998755543 3456666666666666554432 2
Q ss_pred -chh----HHHHHHHHHHHhhhhhhhhhHHHHhHhh-ccccccchhhhhhhhhhhhhh
Q 012910 331 -LPG----ALYAGSILVGVCYGSQWSLMPTIASEIF-GVLQMGTIFNTITIANPVGSY 382 (453)
Q Consensus 331 -~~~----~~~~~~~l~g~~~g~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~ 382 (453)
+.. ...+...+.++++........++..|+. ++++|.+..+.-.....+|+.
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~ 157 (473)
T PRK10429 100 FEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGF 157 (473)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 111 2233444556777777777888889987 578898888886666666654
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.4e-07 Score=87.76 Aligned_cols=166 Identities=7% Similarity=-0.057 Sum_probs=107.2
Q ss_pred hecccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcc--h
Q 012910 257 ATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGL--P 332 (453)
Q Consensus 257 ~~~~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~--~ 332 (453)
....++..++.+ .|+++..+|.++.+.-+...+.-|+.|+++||...|.+ +||+.+..+.+..+++..++. .+. .
T Consensus 27 ~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~G-r~rp~il~g~i~~~i~~~llf~~p~~s~ 105 (460)
T PRK11462 27 NVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWG-KFRPWVLFGALPFGIVCVLAYSTPDLSM 105 (460)
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCC-CcchhHhHHHHHHHHHHHHHHhCCCCCc
Confidence 344556666655 69999999999999999999999999999999877764 344555555555555555443 221 1
Q ss_pred ----hHHHHHHHHHHHhhhhhhhhhHHHHhHhhc-cccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccc
Q 012910 333 ----GALYAGSILVGVCYGSQWSLMPTIASEIFG-VLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGT 407 (453)
Q Consensus 333 ----~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~ 407 (453)
....+...++..++........++.+|..+ +++|.+..+.-..+..+|.. +++.+...+.+..|+. ...
T Consensus 106 ~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~-~~~~~~~plv~~~g~~-----~~~ 179 (460)
T PRK11462 106 NGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGM-LSTVLMMPLVNLIGGD-----NKP 179 (460)
T ss_pred chHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCC-----chh
Confidence 123344455677777777777788888876 57889999988877777764 3444443333333310 001
Q ss_pred cchHHHHHHHHHHHHHHHHHHH
Q 012910 408 HCFMLSFFIMGSATLCGSLAAF 429 (453)
Q Consensus 408 ~~~~~~f~~~~~~~~~~~i~~~ 429 (453)
.+|.....+.+++.+++..++.
T Consensus 180 ~g~~~~~~i~~ii~~i~~~i~~ 201 (460)
T PRK11462 180 LGFQGGIAVLSVVAFMMLAFCF 201 (460)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 2366655555555555544333
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.3e-07 Score=76.14 Aligned_cols=102 Identities=20% Similarity=0.143 Sum_probs=78.3
Q ss_pred hcchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhH
Q 012910 63 TGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFF 142 (453)
Q Consensus 63 ~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~ 142 (453)
.+++.|++.||+| ||+.+..+..+..++.+.+... ++++.+.+.+++.|++.+..
T Consensus 14 ~~~~~g~~~d~~g------------------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~ 68 (141)
T TIGR00880 14 YSPLSGLLTDRFG------------------RKPVLLVGLFIFVLSTAMFALS-------SNITVLIIARFLQGFGAAFA 68 (141)
T ss_pred HHhhHHHHHhhcc------------------hhHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHH
Confidence 3577888888888 9999999998888888775443 58888889999999999999
Q ss_pred hhhhhHhHhhhcC-CCccchhheecccCCCCc--------ccccccccCcccchhh
Q 012910 143 NTADVVTSVRNFP-TYSGTAVGIMKGSDSDRT--------SETSFCEEDELTDDPH 189 (453)
Q Consensus 143 ~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~--------~~~~~~~w~~~~~~~~ 189 (453)
.+.....+.|.+| ++|+++.++......++. ......+|++.+....
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (141)
T TIGR00880 69 LVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLA 124 (141)
T ss_pred HHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHH
Confidence 9999999999997 789999999876554421 1112256777665553
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.7e-06 Score=80.59 Aligned_cols=105 Identities=21% Similarity=0.209 Sum_probs=85.8
Q ss_pred CChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHh----cch----hHHHHHHHHH
Q 012910 271 YSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS----GLP----GALYAGSILV 342 (453)
Q Consensus 271 ~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~----~~~----~~~~~~~~l~ 342 (453)
+++...+.+.....+++++|+++.|++.||+ +||.+....+++++++.++... +++ .++....+++
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~------GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~L 154 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF------GRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLL 154 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh------cchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHh
Confidence 6667778889999999999999999999999 7788888888888887775441 222 2455677899
Q ss_pred HHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhh
Q 012910 343 GVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGS 381 (453)
Q Consensus 343 g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 381 (453)
|+|.|+-+|+..+.++|....+.||+-.+.+...+..|.
T Consensus 155 GiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gi 193 (538)
T KOG0252|consen 155 GIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGI 193 (538)
T ss_pred hccccCCCcchHHHhhhhhhhccccceeEEEEEecchhH
Confidence 999999999999999999999999998887765555554
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.7e-07 Score=88.56 Aligned_cols=182 Identities=15% Similarity=0.063 Sum_probs=133.6
Q ss_pred HHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHH
Q 012910 234 QAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFM 313 (453)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~ 313 (453)
+++.+++..++++...+.......+.+++=..+++.|-.+..-|.....--.+.++.-++.+++.+|+ ++..++
T Consensus 366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki------GHv~v~ 439 (618)
T KOG3762|consen 366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI------GHVNVM 439 (618)
T ss_pred HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh------ccccee
Confidence 34455555444444444433333444555556678877776777666666777778888889999999 677778
Q ss_pred HHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhh-hhhhhhhhhhhhhhhhh
Q 012910 314 VITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTIT-IANPVGSYIFSVRVVGY 391 (453)
Q Consensus 314 ~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~i~g~~~~g~ 391 (453)
..++.+..+-++.+. ..++|..+..-++.|+..+..+.+..+++++..||+.+.++.|+.. ...++|-- +|.+++|.
T Consensus 440 ~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g-~GslIGG~ 518 (618)
T KOG3762|consen 440 YLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKG-LGSLIGGF 518 (618)
T ss_pred eehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcc-hhhhhhhh
Confidence 888888888777776 6777777778899999999999999999999999999999999887 33445543 46667899
Q ss_pred heeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 012910 392 IYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLR 434 (453)
Q Consensus 392 l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~ 434 (453)
+.+..+. +..|...++.+++.+++...+.+.
T Consensus 519 ~v~~fg~------------~ttf~~~giAcl~~l~~~~~iq~~ 549 (618)
T KOG3762|consen 519 VVERFGA------------RTTFRIFGIACLVTLALFISIQLL 549 (618)
T ss_pred hheeehh------------HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9998885 788888888777777665555443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-07 Score=92.19 Aligned_cols=169 Identities=15% Similarity=0.135 Sum_probs=118.9
Q ss_pred cccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHhcch-----
Q 012910 259 VNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLP----- 332 (453)
Q Consensus 259 ~~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~----- 332 (453)
..++..++.+ .|+++...+.+.....+.+.+..|+.|.++||...|.+ +||+.+..+.+..+++..++....+
T Consensus 21 ~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~G-rrrp~~l~g~i~~~~~~~llf~~~p~~~~~ 99 (428)
T PF13347_consen 21 SSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWG-RRRPWILIGAILLALSFFLLFSPPPAGLSF 99 (428)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccccc-ccceEeehhhHHHHHHHHHhhccccchhhh
Confidence 3455566654 59999999999999999999999999999997665554 4566667777777777777653211
Q ss_pred ----hHHHHHHHHHHHhhhhhhhhhHHHHhHhhc-cccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccc
Q 012910 333 ----GALYAGSILVGVCYGSQWSLMPTIASEIFG-VLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGT 407 (453)
Q Consensus 333 ----~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~ 407 (453)
.+..+..+++.+++........++..|..+ +++|.+..+.-.....+|.. +...+.+.+.+..+.... .
T Consensus 100 ~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~-l~~~~~~~l~~~~g~~~~-----~ 173 (428)
T PF13347_consen 100 TAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSL-LASFLAPILVSWFGGGDT-----S 173 (428)
T ss_pred hhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHH-HHHHHhhhhhhhhccCcc-----c
Confidence 123445556677777777777888999987 46899999988888888874 344456666655543110 1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhh
Q 012910 408 HCFMLSFFIMGSATLCGSLAAFGLFLR 434 (453)
Q Consensus 408 ~~~~~~f~~~~~~~~~~~i~~~~~~~~ 434 (453)
.+|+....+.+++.++..++..+..++
T Consensus 174 ~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 174 NGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 248888888888777777666555554
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.7e-09 Score=102.95 Aligned_cols=142 Identities=23% Similarity=0.293 Sum_probs=108.6
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hc---chhHHHHHHHHHHHhhhhh
Q 012910 274 FETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SG---LPGALYAGSILVGVCYGSQ 349 (453)
Q Consensus 274 ~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~---~~~~~~~~~~l~g~~~g~~ 349 (453)
.+.+...+...++..+|.++.|+++||+ |||+.+..+..+..++.++.. .+ +.+.+.+..++.|++.|..
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~------GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~ 119 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRY------GRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGA 119 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccc------cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4567889999999999999999999999 778888888888888887766 34 5667778889999999999
Q ss_pred hhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHH
Q 012910 350 WSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAF 429 (453)
Q Consensus 350 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~ 429 (453)
.+..+.++.|..|+++|+....+.+....+|.. ++.. .+.......+ .+.|+..+.+..+..++..+...
T Consensus 120 ~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~-~~~~-~~~~~~~~~~--------~~~Wr~~~~~~~~~~l~~~~~~~ 189 (451)
T PF00083_consen 120 YVVSPIYISEIAPPKHRGFLSSLFQLFWALGIL-LASL-IGYIVSYYSD--------NWGWRILLIFGAIPSLLVLLLRF 189 (451)
T ss_pred ccccccccccccccccccccccccccccccccc-cccc-cccccccccc--------ccccccccccccccccccccccc
Confidence 999999999999999999999999988888875 3442 2222211110 12278888777776665554443
Q ss_pred HH
Q 012910 430 GL 431 (453)
Q Consensus 430 ~~ 431 (453)
++
T Consensus 190 ~~ 191 (451)
T PF00083_consen 190 FL 191 (451)
T ss_pred cc
Confidence 33
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.6e-06 Score=79.96 Aligned_cols=172 Identities=16% Similarity=0.022 Sum_probs=111.3
Q ss_pred HHHHHHHhhhcchhhecccHHHhhh-hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHH-
Q 012910 243 ILSFAMACGMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAM- 320 (453)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~- 320 (453)
.+...++..... ......++++++ ++|+|.++.+...++..+...+- +++|.++||+... +.+||+.+.++.++.
T Consensus 30 ~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K-~l~g~l~D~~~i~-G~rRr~~l~~~~~l~~ 106 (468)
T TIGR00788 30 IGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALK-PFAGVMSDTFPLF-GYTKRWYLVLSGLLGS 106 (468)
T ss_pred HHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCC-CccchHHHHHHHHHHH
Confidence 333344444444 444455666665 57999999999999999988885 4599999999522 113566666665555
Q ss_pred HHHHHHHHh-cchh-HHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhh---hhhhhhhhhhhhhhhhhhheec
Q 012910 321 SIGHLIIAS-GLPG-ALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTI---TIANPVGSYIFSVRVVGYIYDR 395 (453)
Q Consensus 321 ~i~~~~~~~-~~~~-~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~---~~~~~~g~~i~g~~~~g~l~~~ 395 (453)
.+.+..+.. ++.. ...+..++.+++.+......-.+..|..+ |++....+.. .....+|.. +++.+.|.+.+.
T Consensus 107 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~-vg~~l~G~l~~~ 184 (468)
T TIGR00788 107 AILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGL-ISSLLGGPLLDK 184 (468)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 233333332 2222 22335567777777777788888999888 5554433333 333446774 688889999888
Q ss_pred cCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 012910 396 EASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGL 431 (453)
Q Consensus 396 ~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~ 431 (453)
.+ |+..|++.+.+.++..+...++
T Consensus 185 ~~------------~~~~f~~~a~l~ll~~~~~~~~ 208 (468)
T TIGR00788 185 TL------------TRILFLITAALLLLQLFVSNLS 208 (468)
T ss_pred cC------------cchHHHHHHHHHHHHHHHHHhc
Confidence 76 7899988888777774433333
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.5e-05 Score=71.33 Aligned_cols=154 Identities=16% Similarity=0.065 Sum_probs=107.3
Q ss_pred HhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q 012910 264 QIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVG 343 (453)
Q Consensus 264 ~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~g 343 (453)
..++++|+++.+.+.++......+.+...+.|.++||+ |||+..+..+++..++.+.-..++...+++..++-|
T Consensus 59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~------Grk~~cl~~cily~~scl~k~~~~~~~L~~GRvlgG 132 (354)
T PF05631_consen 59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY------GRKKACLLFCILYSLSCLTKHSSNYPVLLLGRVLGG 132 (354)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 34467899999999999999999999999999999999 777788888888888887766777888889999999
Q ss_pred HhhhhhhhhhHHH-HhHhh----ccccccchhhhhh-hhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHH
Q 012910 344 VCYGSQWSLMPTI-ASEIF----GVLQMGTIFNTIT-IANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIM 417 (453)
Q Consensus 344 ~~~g~~~~~~~~~-~~~~~----~~~~~g~~~g~~~-~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~ 417 (453)
++....++..-++ +.|.- |++..+...+... ..+.+-+ +.+.++...+.|..+.+ ...+|...
T Consensus 133 iaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vA-I~aGv~a~~l~~~~~~g----------~vaPF~~a 201 (354)
T PF05631_consen 133 IATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVA-IGAGVVANVLADWFGFG----------PVAPFDAA 201 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHH-HHHhHHHHHHHHHhCCC----------CcchHHHH
Confidence 9999988877765 44442 2222233333333 2333333 23344555556655421 25678887
Q ss_pred HHHHHHHHHHHHHHhhh
Q 012910 418 GSATLCGSLAAFGLFLR 434 (453)
Q Consensus 418 ~~~~~~~~i~~~~~~~~ 434 (453)
..+..++.++......+
T Consensus 202 ~~~l~~~~~~I~~~W~E 218 (354)
T PF05631_consen 202 IVLLAVAAVLILKTWPE 218 (354)
T ss_pred HHHHHHHHHHHHhcccc
Confidence 77777777655443333
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.1e-06 Score=73.03 Aligned_cols=302 Identities=14% Similarity=0.035 Sum_probs=156.8
Q ss_pred cccccchhHHhhcCCCccchhHHHHHH-HHhhhhcchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHH
Q 012910 31 TFSIYSPALKTTQHYDQTTLDTVSVFK-DIGANTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGY 109 (453)
Q Consensus 31 ~~~~~~~~~~~~~~~s~~~~~~i~~~~-~~~~~~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~ 109 (453)
..+++.-.+-+.++....|++.+.... .-..+++.+.|-+.||-| ||+. ++.+++.+
T Consensus 55 LQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqG------------------RKra----cvtycitY 112 (454)
T KOG4332|consen 55 LQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQG------------------RKRA----CVTYCITY 112 (454)
T ss_pred hcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhc------------------cccc----eeeehHHH
Confidence 344555556677888889999443333 334457888899999999 8886 44455555
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcCCCccchhheecc--------cCCC----------
Q 012910 110 FLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMKG--------SDSD---------- 171 (453)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p~~rg~~~g~~~~--------~~~~---------- 171 (453)
+++..+ ... +.|-.++++|++.|++.+..+.+--+.......++|+.---+... +.++
T Consensus 113 iLsCiT--KhS--pqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn 188 (454)
T KOG4332|consen 113 ILSCIT--KHS--PQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGN 188 (454)
T ss_pred HHHHHh--hcC--CceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHH
Confidence 554332 333 588899999999999999988776665543323445432222211 1121
Q ss_pred CcccccccccCcccchhhhhhhhhcc--cccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHH
Q 012910 172 RTSETSFCEEDELTDDPHEMHAEKMH--VRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMA 249 (453)
Q Consensus 172 ~~~~~~~~~w~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (453)
........|....|..-.....+-.. +....++..++ .++++- ..+-+...+.+..|++..++-....
T Consensus 189 ~lvd~~slGPVAPFdAAacfLaigmAvil~~W~ENygdp----s~~kdl------ltqf~gaa~aiaSD~ki~LLG~iqs 258 (454)
T KOG4332|consen 189 LLVDTFSLGPVAPFDAAACFLAIGMAVILSSWSENYGDP----SENKDL------LTQFKGAARAIASDEKIALLGAIQS 258 (454)
T ss_pred HHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhhccCCh----hhhHHH------HHHhhHhHHHHhcchHHHHHHHHHH
Confidence 01111113334444433222222221 22222222111 110000 0000112234455666655554444
Q ss_pred hhhcchhhecc-cHHHhhh-hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHH
Q 012910 250 CGMGSGLATVN-NISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLII 327 (453)
Q Consensus 250 ~~~~~~~~~~~-~~~~~~~-~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~ 327 (453)
+.-...+.+.+ |.|.+-- +.+. --|.+++-+..+++.|+-+..++..|-..| -...+.+..++.+..+.+.
T Consensus 259 LFE~smytFVFLWTPaLspn~e~i---PhGfiFatFMlASmLGSSla~Rl~s~s~~~----ve~ymqivf~vs~a~l~Lp 331 (454)
T KOG4332|consen 259 LFEGSMYTFVFLWTPALSPNDEEI---PHGFIFATFMLASMLGSSLASRLLSRSSPK----VESYMQIVFLVSIAALLLP 331 (454)
T ss_pred HHhhhhheeeeeecccCCCCcccC---CchhHHHHHHHHHHHhhHHHHHHHhcCCcc----cchHHHHHHHHHHHHHHHH
Confidence 44444443333 3443321 2233 235667777777777766665555443222 1222333333333333332
Q ss_pred H--h---c---chhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhh
Q 012910 328 A--S---G---LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITI 375 (453)
Q Consensus 328 ~--~---~---~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 375 (453)
. . + ++..-.+...++-.+.|..+|.+.-+=.++.|++.|++.+.+.-.
T Consensus 332 ilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRv 387 (454)
T KOG4332|consen 332 ILTSSVSPSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRV 387 (454)
T ss_pred HHHhccCCCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheec
Confidence 2 1 1 122334555666788899999999988999998888887766543
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=4e-06 Score=82.13 Aligned_cols=116 Identities=13% Similarity=0.076 Sum_probs=73.8
Q ss_pred cccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHH-HHHHHHHhc-c----
Q 012910 259 VNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMS-IGHLIIASG-L---- 331 (453)
Q Consensus 259 ~~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~-i~~~~~~~~-~---- 331 (453)
..+++.|+++ .|+++.++|.+.++..+...+..++.|+++||.++|++ +||..+..+.+... .+.+++..+ .
T Consensus 28 ~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~G-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (448)
T PRK09848 28 ALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWG-KFRPFLLFGTAPLMIFSVLVFWVPTDWSHS 106 (448)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCc-CchHHHHHHHHHHHHHHHHHHhCcCCCCcc
Confidence 3445566665 59999999999999999999999999999999977653 23334344444333 333333221 1
Q ss_pred h--hHHHHHHHHHHHhhhhhhhhhHHHHhHhhcc-ccccchhhhhhh
Q 012910 332 P--GALYAGSILVGVCYGSQWSLMPTIASEIFGV-LQMGTIFNTITI 375 (453)
Q Consensus 332 ~--~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~-~~~g~~~g~~~~ 375 (453)
. ....+...+.+.+++...+...++..+...+ ++|.+..+.-..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~ 153 (448)
T PRK09848 107 SKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGI 153 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHH
Confidence 1 1123344566777777777666766666543 556665554443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=9.2e-06 Score=77.43 Aligned_cols=173 Identities=10% Similarity=0.010 Sum_probs=112.7
Q ss_pred cchhhecccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHH-HHHHHHHhc
Q 012910 253 GSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMS-IGHLIIASG 330 (453)
Q Consensus 253 ~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~-i~~~~~~~~ 330 (453)
........++..++.+ .|+++..+|.++.+.=+..++.-|+.|.++||..+|++ ++|+.+..+.+..+ +..+.+..+
T Consensus 26 ~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~G-rfRP~lL~g~ip~~i~~~l~F~~p 104 (467)
T COG2211 26 FAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWG-RFRPWLLWGAIPFAIVAVLLFITP 104 (467)
T ss_pred HHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccc-cccHHHHHHhHHHHHHHHHHHcCC
Confidence 3334455667777775 59999999999999999999999999999999987775 34444444444444 444444433
Q ss_pred c------hhHHHHHHHHHHHhhhhhhhhhHHHHhHhhc-cccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCc
Q 012910 331 L------PGALYAGSILVGVCYGSQWSLMPTIASEIFG-VLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNK 403 (453)
Q Consensus 331 ~------~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~ 403 (453)
+ ....++...+.++++........++.+|+.+ +++|.+..+.-.....+|.++ ...+...+....+....
T Consensus 105 ~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l-~~~~~~plv~~~g~~~~-- 181 (467)
T COG2211 105 DFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLL-VAVLFPPLVKLFGGGDK-- 181 (467)
T ss_pred CcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCcc--
Confidence 2 1234566678888888887777788888754 467888888777777777643 33344444444432110
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHh
Q 012910 404 CTGTHCFMLSFFIMGSATLCGSLAAFGLF 432 (453)
Q Consensus 404 ~~~~~~~~~~f~~~~~~~~~~~i~~~~~~ 432 (453)
..+|+..-.+.+++..+..+.++.-.
T Consensus 182 ---~~g~~~~~~~~~vi~~i~~l~~~~~v 207 (467)
T COG2211 182 ---ALGYQGTALVLGVIGVILLLFCFFNV 207 (467)
T ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22366666666666655555544433
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.7e-05 Score=78.67 Aligned_cols=164 Identities=15% Similarity=0.189 Sum_probs=120.9
Q ss_pred hecccHHHhhh-hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHhcc----
Q 012910 257 ATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGL---- 331 (453)
Q Consensus 257 ~~~~~~~~~~~-~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~---- 331 (453)
++...+..|+. .+|+++..+..+...+....-+..+++|+++|++- ++++.+..+.++..++..++....
T Consensus 5 Gm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~l-----G~~~tIl~~~ii~~lG~~llai~a~~~~ 79 (654)
T TIGR00926 5 GMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWL-----GKFKTILYLSIVYVVGHALLSFGAIPSS 79 (654)
T ss_pred ecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHhccCccc
Confidence 34444555544 57999999999888888888899999999999885 778888888888888887765321
Q ss_pred -----hhHHHHHHHHHHHhhhhhhhhhHHHHhHhhcccc---ccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCc
Q 012910 332 -----PGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQ---MGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNK 403 (453)
Q Consensus 332 -----~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~---~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~ 403 (453)
....++.+.+...|.|+.-+...+...|.+++++ +-..+.+.+.+.++|++ +++++.+++.+..+
T Consensus 80 ~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSl-is~~i~~~l~~~~~------ 152 (654)
T TIGR00926 80 GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSL-ISTIITPILRGDVG------ 152 (654)
T ss_pred ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhc------
Confidence 1124566777888999999999999999987543 45577777889999986 67778888765432
Q ss_pred ccc-ccchHHHHHHHHHHHHHHHHHHHHHh
Q 012910 404 CTG-THCFMLSFFIMGSATLCGSLAAFGLF 432 (453)
Q Consensus 404 ~~~-~~~~~~~f~~~~~~~~~~~i~~~~~~ 432 (453)
|.+ ..+|..+|.+.+++.+++.++.....
T Consensus 153 ~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~ 182 (654)
T TIGR00926 153 CFGCQDCYPLAFGVPAILMILALIVFMAGS 182 (654)
T ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 111 22388899988888888876655433
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.5e-05 Score=71.55 Aligned_cols=129 Identities=16% Similarity=0.076 Sum_probs=94.4
Q ss_pred hhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-----hcc--------hh
Q 012910 267 GSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-----SGL--------PG 333 (453)
Q Consensus 267 ~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-----~~~--------~~ 333 (453)
.|++.+..-.+.+.++..+.+. .|+.+|+.||+.....+++|.+.+..+..++..+..+.. ... .+
T Consensus 8 vEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~ 86 (403)
T PF03209_consen 8 VELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFW 86 (403)
T ss_pred HHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccH
Confidence 4678888888888887777665 599999999999733444455556666666555444422 111 11
Q ss_pred ----HHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccC
Q 012910 334 ----ALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREA 397 (453)
Q Consensus 334 ----~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g 397 (453)
...+...++|++.+...+...+++.|..|+|+|+++.++.....-+|.. ++..+.|.+.|...
T Consensus 87 ~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~i-v~ai~~g~lL~~~s 153 (403)
T PF03209_consen 87 LGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGII-VSAIVFGRLLDPFS 153 (403)
T ss_pred HHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHH-HHHHHHHHHccccC
Confidence 2234556788999998999999999999999999999999988777774 67778888887654
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=7e-06 Score=76.01 Aligned_cols=131 Identities=11% Similarity=0.020 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHhhcCcccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhcc
Q 012910 14 VSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLL 92 (453)
Q Consensus 14 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~ 92 (453)
.+..+.....+..|.....+.-...-++++|++..|+.++.....+.++. ++++|++.||+|
T Consensus 254 i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg----------------- 316 (438)
T COG2270 254 LVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFG----------------- 316 (438)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------------
Confidence 33334444444566655444443445679999999999887777777764 599999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccC
Q 012910 93 GPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSD 169 (453)
Q Consensus 93 g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~ 169 (453)
.|+++.++.++..+..+...+. .....+.++..+.|...|..+..+-++.++..| +|.++..|+++...
T Consensus 317 -~k~vl~~~lvi~~~~~~~~~~~-------~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltg 386 (438)
T COG2270 317 -SKPVLMIGLVILSIAALYLIFL-------EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTG 386 (438)
T ss_pred -CceeehHHHHHHHHHHHHHHHc-------cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhh
Confidence 9999999999888777763332 344566678899999999999999999999997 68899999986543
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00011 Score=68.69 Aligned_cols=124 Identities=11% Similarity=-0.049 Sum_probs=75.5
Q ss_pred cchhHHhhcCCCccchhHHH-HHHHHhhhhcchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHHHH
Q 012910 35 YSPALKTTQHYDQTTLDTVS-VFKDIGANTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMW 113 (453)
Q Consensus 35 ~~~~~~~~~~~s~~~~~~i~-~~~~~~~~~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~ 113 (453)
+.+++..++|++....+.+- ..-..+..++|+.|..+||-.+|.|||| +.+..+.....++.+++.
T Consensus 54 y~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRR-------------PfI~~~s~~i~~~l~Lig 120 (498)
T KOG0637|consen 54 YLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRR-------------PFILAGSLLIAVSLFLIG 120 (498)
T ss_pred cccHHHHHcCCCcccccccccccccccceeccccccccccccccccccc-------------chHHHhhHHHHHHHhhhh
Confidence 45777888899888888443 3345555678999999999986666554 234445555556666544
Q ss_pred HHH--hcC-CCCC-------CHHHHHHHHHHHHhhhhhHhhhhhHhHhhhc-CCCccc-hhheecccCCC
Q 012910 114 ASV--VGL-IPRP-------PVPVMCLFMLFAAHGMTFFNTADVVTSVRNF-PTYSGT-AVGIMKGSDSD 171 (453)
Q Consensus 114 ~~~--~~~-~~~~-------~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~-p~~rg~-~~g~~~~~~~~ 171 (453)
++. ... .... ....++++-.+.=++......++-++..|.. ++++-+ +++......++
T Consensus 121 ~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~av 190 (498)
T KOG0637|consen 121 YAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAV 190 (498)
T ss_pred hHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHh
Confidence 431 111 1001 1123334445555677777888888999987 443333 77777555444
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=3e-05 Score=70.38 Aligned_cols=143 Identities=13% Similarity=0.032 Sum_probs=105.5
Q ss_pred cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHhhh
Q 012910 269 LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYG 347 (453)
Q Consensus 269 ~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~g~~~g 347 (453)
-|.+..+..++......+..+++..+|.++|+++ |++..........+.-++-. .++..++.+...+.|++.|
T Consensus 108 w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~g------rr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~g 181 (528)
T KOG0253|consen 108 WGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIG------RRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVG 181 (528)
T ss_pred hchhhhhhhHHHHHHHhhhhhhhhhhheehhhhh------cchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCC
Confidence 4888899999999999999999999999999994 55555555555555555444 4566677788889999999
Q ss_pred hhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHH
Q 012910 348 SQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLA 427 (453)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~ 427 (453)
+ .|...++-.|..|..++..-+-.. ..+.+|.. +...+.=....+.| |++-+........+.+..
T Consensus 182 g-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v-~ea~law~vm~~~g------------wr~~l~~~~~pl~~~a~f 246 (528)
T KOG0253|consen 182 G-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQV-FEALLAWGVMSNFG------------WRYLLFTSSTPLMFAARF 246 (528)
T ss_pred C-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHH-HHHHHHHHHHHhhh------------HHHHHHHHHhHHHHHHHH
Confidence 8 788888888999988888766555 67777774 55545544555556 888888777655555555
Q ss_pred HHHHh
Q 012910 428 AFGLF 432 (453)
Q Consensus 428 ~~~~~ 432 (453)
..+..
T Consensus 247 ~~w~~ 251 (528)
T KOG0253|consen 247 LVWVY 251 (528)
T ss_pred Hhhcc
Confidence 44443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.1e-05 Score=55.43 Aligned_cols=57 Identities=16% Similarity=0.044 Sum_probs=50.2
Q ss_pred HHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhh
Q 012910 246 FAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFL 302 (453)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~ 302 (453)
..+++..+....+..+++.++++.|+|+.+.|.+.++..+...++.+++|+++||.+
T Consensus 7 ~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~ 63 (77)
T PF12832_consen 7 AFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFG 63 (77)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 445555566666778899999999999999999999999999999999999999995
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0012 Score=62.15 Aligned_cols=282 Identities=10% Similarity=0.007 Sum_probs=147.4
Q ss_pred cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHh
Q 012910 64 GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFN 143 (453)
Q Consensus 64 ~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~ 143 (453)
-+.+-+..+|.. .+.=..+..++..+|.++ .+++ ++.+.-+++-++.+++.|...
T Consensus 76 Kl~aP~fi~~v~------------------y~~Ri~~~~~l~~~g~l~-----va~~--~~v~~~l~Gv~las~ssg~GE 130 (402)
T PF02487_consen 76 KLIAPFFIHRVP------------------YWIRILICVALSAAGMLL-----VAFS--PSVWVRLLGVVLASLSSGLGE 130 (402)
T ss_pred HHHhHhhhhhcc------------------chHHHHHHHHHHHHHHhh-----eeec--cchhHHHHHHHHHhhhhhhhH
Confidence 366777888887 444444556677778887 3444 588888889999999999888
Q ss_pred hhhhHhHhhhcCCCccchhheecccCCCCcccc-------ccccc--Ccccchhhhhh----hh-hcccccCCCCcccCC
Q 012910 144 TADVVTSVRNFPTYSGTAVGIMKGSDSDRTSET-------SFCEE--DELTDDPHEMH----AE-KMHVRQDPVGYHRLP 209 (453)
Q Consensus 144 ~~~~~~~~~~~p~~rg~~~g~~~~~~~~~~~~~-------~~~~w--~~~~~~~~~~~----~~-~~~l~~~~~~~~~~~ 209 (453)
..-..+. ..|++ ...+-+.+|.|.+-... ...++ |..+.....+. .. +..++.++.+....+
T Consensus 131 ~tfL~lt-~~y~~---~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~ 206 (402)
T PF02487_consen 131 VTFLSLT-HFYGK---SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQE 206 (402)
T ss_pred HHHHHHH-HhcCc---cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcc
Confidence 7777763 45564 34566666665422110 00222 22232221111 11 112332221111111
Q ss_pred CCCCC--CCCCCcC----CcCCCCCCccHHHHhh-hhHHHHHHHHHHhhhcchhheccc-HHHhhh--hcCCChhhhhHH
Q 012910 210 SEPDV--GTDTNDA----TTSLWGGDLDLLQAIC-TLEFWILSFAMACGMGSGLATVNN-ISQIGG--SLGYSSFETSSL 279 (453)
Q Consensus 210 ~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~g~s~~~~~~~ 279 (453)
.+.++ +++..++ .+++...+.+.++-++ -+......+-.+..+.+.+....- .+...- +..-..++..+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y 286 (402)
T PF02487_consen 207 SESEDEAEDDLLESETSESKPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWY 286 (402)
T ss_pred cCCCCcccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHH
Confidence 11100 0000000 0111111223332222 222222444444444555444332 333331 112223456667
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH----hcchhHHHHHHHHHHHhhhhhhhhhHH
Q 012910 280 ISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA----SGLPGALYAGSILVGVCYGSQWSLMPT 355 (453)
Q Consensus 280 ~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~l~g~~~g~~~~~~~~ 355 (453)
...+.++-+++|--.-.+ |+ ++.+++.+...+..+.+++-. .++.+.+++..+..|+..|+.+.....
T Consensus 287 ~~~YQ~GVFISRSS~~~~--ri------r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~ 358 (402)
T PF02487_consen 287 QLLYQLGVFISRSSLPFF--RI------RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFY 358 (402)
T ss_pred HHHHHHHHhhhhcceeee--eh------hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 777888777776543322 33 344444443333333332211 345566666777889998998988888
Q ss_pred HHhHhhccccccchhhhhhhhhhhhhh
Q 012910 356 IASEIFGVLQMGTIFNTITIANPVGSY 382 (453)
Q Consensus 356 ~~~~~~~~~~~g~~~g~~~~~~~~g~~ 382 (453)
.+.|..++++|-.++|....+-++|-.
T Consensus 359 ~I~~~~~~~~REFslg~vsvsds~GI~ 385 (402)
T PF02487_consen 359 RISEEVPPEDREFSLGAVSVSDSLGIL 385 (402)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhhHHHH
Confidence 889889999999999999988888875
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.6e-05 Score=74.43 Aligned_cols=128 Identities=14% Similarity=-0.004 Sum_probs=93.4
Q ss_pred HHHHhhcCcccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCch--HH
Q 012910 21 WIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPW--VV 97 (453)
Q Consensus 21 ~~~~~~g~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r--~~ 97 (453)
......|...........-.+++|++..++..+.....+.++. +.++|++.||+| .| ++
T Consensus 290 ~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g------------------~k~~~~ 351 (477)
T PF11700_consen 290 YFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFG------------------PKTKRT 351 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------------CchhHH
Confidence 3333456666666666667889999999988666666666664 589999999999 77 78
Q ss_pred HHHHHHHHHHHHHHHHH--HHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecc
Q 012910 98 LLVGAIQCFAGYFLMWA--SVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKG 167 (453)
Q Consensus 98 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~ 167 (453)
++++.+++.+-.+.-.+ . ......++.+.+.+.-++.|+..|..++.+-++.++..| ++.+...|++..
T Consensus 352 l~~~l~~~~~i~~~g~~G~~-~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i 423 (477)
T PF11700_consen 352 LLISLILWIIIPLYGLFGFW-PSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAI 423 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhh-hcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 87777766433332111 1 111112477889999999999999999999999999998 677888888754
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=97.85 E-value=5.1e-05 Score=70.20 Aligned_cols=99 Identities=10% Similarity=0.005 Sum_probs=74.7
Q ss_pred hcCCCccchhHHHHHHHHhhhhc-chhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012910 42 TQHYDQTTLDTVSVFKDIGANTG-TLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLI 120 (453)
Q Consensus 42 ~~~~s~~~~~~i~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (453)
++|++..+.+...+.+..+...+ ...+++.||+| +|+++.++..+..++.++....
T Consensus 172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g------------------~~~~l~~~~~l~~~~~~l~~~~----- 228 (310)
T TIGR01272 172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMIS------------------QGRYLAFNAFLAVLLSIGAALT----- 228 (310)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------------HHHHHHHHHHHHHHHHHHHHHc-----
Confidence 36899999997777777777766 89999999999 8998888888777776553222
Q ss_pred CCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcCCCccchhheec
Q 012910 121 PRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTYSGTAVGIMK 166 (453)
Q Consensus 121 ~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p~~rg~~~g~~~ 166 (453)
++...+ ..-++.|++.+..+|...+...+.+|++.+.+.++..
T Consensus 229 --~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~~~~asai~~ 271 (310)
T TIGR01272 229 --HGYVAM-WFVLALGLFNSIMFPTIFSLALNALGRHTSQGSGILC 271 (310)
T ss_pred --CCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence 232222 3455889999999999999999989877777777653
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00057 Score=65.40 Aligned_cols=144 Identities=16% Similarity=0.043 Sum_probs=91.3
Q ss_pred HHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchh
Q 012910 232 LLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPL 311 (453)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~ 311 (453)
++..++.+.+ +..++..+.++....+...+..|+.+.|+++...+..-+...+.++.|.++..++.+|+|. .+
T Consensus 252 w~~Y~~q~vf-las~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGl------vr 324 (432)
T PF06963_consen 252 WRTYFRQPVF-LASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGL------VR 324 (432)
T ss_pred HHHHHhCHHH-HHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------hh
Confidence 3334444443 3334444444445566777888888889999999999999999999999999999999953 33
Q ss_pred HHHHHHHHHHHHH----HHHH-hcch-hH-----HHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhh
Q 012910 312 FMVITLAAMSIGH----LIIA-SGLP-GA-----LYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVG 380 (453)
Q Consensus 312 ~~~~~~~~~~i~~----~~~~-~~~~-~~-----~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 380 (453)
.-..+.......+ ..+. ..++ .. +....++.=+|.-+.--...-++.|..|+++||...|.-+...++.
T Consensus 325 ~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf 404 (432)
T PF06963_consen 325 AGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLF 404 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHH
Confidence 3333333322222 2222 2221 11 1122222223333444555677889999999999999988777777
Q ss_pred hh
Q 012910 381 SY 382 (453)
Q Consensus 381 ~~ 382 (453)
..
T Consensus 405 ~l 406 (432)
T PF06963_consen 405 EL 406 (432)
T ss_pred HH
Confidence 64
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00027 Score=68.62 Aligned_cols=157 Identities=19% Similarity=0.115 Sum_probs=105.4
Q ss_pred HHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-h----cchhHHHH
Q 012910 263 SQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-S----GLPGALYA 337 (453)
Q Consensus 263 ~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~----~~~~~~~~ 337 (453)
+.+.+++|.++.+.....+...+.-. ..++.|.++|-+--.. .+||+-+.++.++..++...+. . .+.....+
T Consensus 14 ~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G-~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~ 91 (433)
T PF03092_consen 14 PFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFG-YRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVV 91 (433)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccC-CcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHH
Confidence 34445689999988887776666544 4788999999874221 1466666777777655555443 1 12233444
Q ss_pred HHHHHHHhhhhhhhhhHHHHhHhhcc--ccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHH
Q 012910 338 GSILVGVCYGSQWSLMPTIASEIFGV--LQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFF 415 (453)
Q Consensus 338 ~~~l~g~~~g~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~ 415 (453)
..++..++....-...-+...|...+ +.+|...+.......+|+. ++..+.|.+.+..+ ++..|.
T Consensus 92 ~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~l-v~~~l~G~l~~~~~------------~~~~f~ 158 (433)
T PF03092_consen 92 LLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSL-VGSLLSGPLLDSFG------------PQGVFL 158 (433)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHH-HHHHhhhhhhhcCC------------CeEEeh
Confidence 55566667766666666777777643 2356677777888888885 67778899988876 577888
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 012910 416 IMGSATLCGSLAAFGLFLR 434 (453)
Q Consensus 416 ~~~~~~~~~~i~~~~~~~~ 434 (453)
+.+.+.++..+..+++.++
T Consensus 159 i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 159 ISAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 8887777776666666554
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.78 E-value=5.8e-05 Score=53.66 Aligned_cols=69 Identities=14% Similarity=0.146 Sum_probs=61.9
Q ss_pred cccccccchhHHhhcCCCccchhHHHHHHHHhhhhc-chhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHH
Q 012910 29 LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANTG-TLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFA 107 (453)
Q Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~ 107 (453)
.+.+.+..|.+++|.++|.++.+++.+...+|++.+ +...++.++.. +++.+..+.+...+
T Consensus 8 RFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~------------------~~~~~~~~l~~~~~ 69 (85)
T PF06779_consen 8 RFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSR------------------PRRLLRAGLLLTVL 69 (85)
T ss_pred HHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------------------HHHHHHHHHHHHHH
Confidence 677889999999999999999999999999999986 88888888877 88999999999999
Q ss_pred HHHHHHHH
Q 012910 108 GYFLMWAS 115 (453)
Q Consensus 108 ~~~~~~~~ 115 (453)
..+.+++.
T Consensus 70 ~~~~ma~~ 77 (85)
T PF06779_consen 70 STAAMALT 77 (85)
T ss_pred HHHHHHHH
Confidence 99996665
|
Note that many members are hypothetical proteins. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0021 Score=60.47 Aligned_cols=124 Identities=19% Similarity=0.107 Sum_probs=87.2
Q ss_pred hhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-h--c----chh--H
Q 012910 265 IGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-S--G----LPG--A 334 (453)
Q Consensus 265 ~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~--~----~~~--~ 334 (453)
+.++ +| +...+-+...++.+.++.-.+.+-|+.||+ |-|....++..+.+++..+=. . + ..+ .
T Consensus 70 ~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~------GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l 142 (480)
T KOG2563|consen 70 YVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF------GLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPL 142 (480)
T ss_pred HHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc------chHHHHHHHHHHHHHHHHHhhhccCccccccchhhh
Confidence 3443 36 666777888889999999999999999999 677788888888888887743 1 1 112 3
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheecc
Q 012910 335 LYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDRE 396 (453)
Q Consensus 335 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~ 396 (453)
......+.+..+-.....-.-...-.||+++|+.+..+..+++.+|.. ++.++...+..+.
T Consensus 143 ~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGva-vg~llppilV~~~ 203 (480)
T KOG2563|consen 143 THTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVA-VGFLLPPILVPSS 203 (480)
T ss_pred hHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHH-HHhhccceecCCC
Confidence 334455555555555444445667779999999999998888888874 5665555555443
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00049 Score=62.09 Aligned_cols=359 Identities=13% Similarity=0.062 Sum_probs=181.5
Q ss_pred ccchhHH-hhcCCCccchh-HHHHHHHHhhhhc-chhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHH
Q 012910 34 IYSPALK-TTQHYDQTTLD-TVSVFKDIGANTG-TLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYF 110 (453)
Q Consensus 34 ~~~~~~~-~~~~~s~~~~~-~i~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~ 110 (453)
-..|.+. .+.|++..|+. =+.-...-.+.++ .+.=.+.|..- .|+++++-.+.......
T Consensus 26 ~~tpyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lr------------------YKPvivlq~ls~v~~w~ 87 (433)
T KOG3810|consen 26 YLTPYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLR------------------YKPVVVLQALSGVPVWI 87 (433)
T ss_pred ccchhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhh------------------cceeeeeeccchhHHHH
Confidence 3344444 55677766665 1222222222333 45556788887 88887766555555555
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhc-CCCccchhheecccC--------CCCccccccccc
Q 012910 111 LMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNF-PTYSGTAVGIMKGSD--------SDRTSETSFCEE 181 (453)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~-p~~rg~~~g~~~~~~--------~~~~~~~~~~~w 181 (453)
++-+. ++.+.+-+.-+..|...+. ..+-.+++-.-. |+++-++.|.--+.. .++........+
T Consensus 88 ~lv~g-------~sV~~mQvlE~FyG~~tAa-EIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~ 159 (433)
T KOG3810|consen 88 MLVFG-------PSVKAMQVLEFFYGPATAA-EIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETL 159 (433)
T ss_pred HHHhc-------CCchheeeehhhcChHHHH-HHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhccc
Confidence 43332 6888888888888887764 344455554444 466555555442211 111111111111
Q ss_pred Cccc---chhhhhhh--hh-cccccCCCCcccCCCCCCCCCCCC-cCCcCCCCC-----------CccHHHHhhhhHHHH
Q 012910 182 DELT---DDPHEMHA--EK-MHVRQDPVGYHRLPSEPDVGTDTN-DATTSLWGG-----------DLDLLQAICTLEFWI 243 (453)
Q Consensus 182 ~~~~---~~~~~~~~--~~-~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----------~~~~~~~~~~~~~~~ 243 (453)
.... ........ .. ..++.+++. .-.+.++++....+ ++..++.+. ..++.+..+||+...
T Consensus 160 sy~~LN~ISL~~~~ia~~~A~fLP~v~rS-l~f~~~~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~ 238 (433)
T KOG3810|consen 160 SYTTLNYISLAEVTIAVLLALFLPRVKRS-LYFHRLEDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLK 238 (433)
T ss_pred chhhhchhhHHHHHHHHHHHhhCCCCchh-hhhhcccccceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhh
Confidence 1111 11111111 11 112222211 11111111110000 000111110 112334456777666
Q ss_pred HHHHHHhhhcchhhecccHHHhhhhcCC--ChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHH
Q 012910 244 LSFAMACGMGSGLATVNNISQIGGSLGY--SSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMS 321 (453)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~ 321 (453)
..+...+.....+-+.++...+.++..- ...-.|..=......++++.+..|.+.-.+.| .+..++..+.+..+
T Consensus 239 WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r----~g~~ll~~~s~~~a 314 (433)
T KOG3810|consen 239 WSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNR----WGDLLLAVGSAVQA 314 (433)
T ss_pred hHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccch----hhHHHHHHHHHHhh
Confidence 5555666655555555555555555421 11223444455666677778888888765532 23445555555555
Q ss_pred HHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCC
Q 012910 322 IGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGE 400 (453)
Q Consensus 322 i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~ 400 (453)
..++.+. ..+.+..++..+++...+....++....+++....|..|..+|+..+..-+- ..++.-...|..|-+-
T Consensus 315 gllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~l----QsilT~iVvd~~g~~L 390 (433)
T KOG3810|consen 315 GLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALIL----QSILTLIVVDDRGLGL 390 (433)
T ss_pred hhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHH----HHhheEEEEcccccCC
Confidence 5555555 5666788888888888888877777777888788888899988876544333 3335555666544221
Q ss_pred CCccccccchHHHHHHHHHHHHHHHHHH
Q 012910 401 GNKCTGTHCFMLSFFIMGSATLCGSLAA 428 (453)
Q Consensus 401 ~~~~~~~~~~~~~f~~~~~~~~~~~i~~ 428 (453)
+. -..-.-|..-|.+.+++.+++..+.
T Consensus 391 ~i-r~Q~~~Y~~Yf~v~~~i~~~~~~~~ 417 (433)
T KOG3810|consen 391 DI-RTQFVVYSSYFIVLGVIFLIGFGIE 417 (433)
T ss_pred Cc-ceeEEEEeehHHHHHHHHHHHHHHH
Confidence 10 0011224555777777777776543
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00052 Score=66.50 Aligned_cols=132 Identities=13% Similarity=0.153 Sum_probs=100.0
Q ss_pred HHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH--HhhhhhhhhhHHHHhHh
Q 012910 283 WSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVG--VCYGSQWSLMPTIASEI 360 (453)
Q Consensus 283 ~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~g--~~~g~~~~~~~~~~~~~ 360 (453)
.++..++.++..|.++||+ +||..+........+..+...... ++..+ +.+ .+++..+....++++|.
T Consensus 71 ~~~~~~i~s~~iG~lSD~~------grk~~L~~~~~~~~l~~~~~~~~~-~~~~~---~~~l~g~~~~~~s~~~a~vadi 140 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRY------GRKVVLLLPLFGTILPALCLLFQG-YWFFL---LLGLSGGFSAIFSVGFAYVADI 140 (463)
T ss_pred hHHHHHHHHhhhHHhhhhh------hhhhhHHHHHHHHHHhHHHHHHHH-HHHhh---hcccccchhhhhhhhhhheeec
Confidence 4778889999999999999 677777777776666666655433 22222 332 24555667778889999
Q ss_pred hccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 012910 361 FGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKR 437 (453)
Q Consensus 361 ~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~ 437 (453)
...+.|....|+.+.....+.. ++|.+.+.+.+..+ +-..|.+..+...++.+...+..++...
T Consensus 141 s~~~~R~~~~gll~~~~~~~~~-~~p~~~~~~~~~~~------------~a~~f~ia~~~~~~~~~y~~~~l~Esl~ 204 (463)
T KOG2816|consen 141 SSEEERSSSIGLLSGTFGAGLV-IGPALGGYLVKFLG------------IALVFLIAAASGILSLLYMLLFLPESLQ 204 (463)
T ss_pred cchhHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHhcC------------chHHHHHHHHHHHHHHHHHhhccccccC
Confidence 9999999999999988888875 68889999988876 6788889888888888777766655443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0013 Score=53.37 Aligned_cols=111 Identities=12% Similarity=-0.039 Sum_probs=85.4
Q ss_pred CChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhh
Q 012910 271 YSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQW 350 (453)
Q Consensus 271 ~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~g~~~g~~~ 350 (453)
.++.......++......+..++.+.+.+++ +.|+.+.++.+...+-......++.+.++...++.|++.+..+
T Consensus 34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~l------g~K~sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW 107 (156)
T PF05978_consen 34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKL------GPKWSMILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLW 107 (156)
T ss_pred ccccccHHHHHHHHHHHHHHHHhHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhh
Confidence 3444444566777777788888889999999 7788888888777766655556667788889999999999999
Q ss_pred hhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhh
Q 012910 351 SLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRV 388 (453)
Q Consensus 351 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~ 388 (453)
.....++.+...++.+++..|+.......+.. .|..+
T Consensus 108 ~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i-~G~~~ 144 (156)
T PF05978_consen 108 TAQGTYLTSYSTEETIGRNTGIFWAIFQSSLI-FGNLF 144 (156)
T ss_pred HhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHH-HHHHH
Confidence 99999999999888999988887766665553 45433
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.47 E-value=1.9e-05 Score=78.31 Aligned_cols=166 Identities=15% Similarity=0.150 Sum_probs=2.6
Q ss_pred cHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHhcc---------
Q 012910 261 NISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGL--------- 331 (453)
Q Consensus 261 ~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~--------- 331 (453)
.++++-+.+++++.++|.+.+.+-+++.+..++..++.+|. .|.+.+..+.++++++.+++..++
T Consensus 25 ~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~------hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~ 98 (539)
T PF03137_consen 25 SLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG------HRPRWIGIGALLMGLGSLLFALPHFLSGPYSYE 98 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------CCcceeeecHHHHHHHHHHHhccHhhcCCCccc
Confidence 34444456799999999999999999999999999888876 566677888888888887754210
Q ss_pred ------------------------------------------hhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccch
Q 012910 332 ------------------------------------------PGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTI 369 (453)
Q Consensus 332 ------------------------------------------~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~ 369 (453)
...++++.++.|+|....++...+++-|.+++++.+..
T Consensus 99 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splY 178 (539)
T PF03137_consen 99 EASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLY 178 (539)
T ss_dssp -----------------------------------------------------SSS------------------------
T ss_pred cccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccc
Confidence 01234555778888888999999999999999999999
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhheeccCCCCCC----cccc------ccchHHHHHHHHHHHHHHHHHHHHHhh
Q 012910 370 FNTITIANPVGSYIFSVRVVGYIYDREASGEGN----KCTG------THCFMLSFFIMGSATLCGSLAAFGLFL 433 (453)
Q Consensus 370 ~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~----~~~~------~~~~~~~f~~~~~~~~~~~i~~~~~~~ 433 (453)
.|+.+....+|.. +|-.+++...+...+.... .... ..+|...|++.+.+.++..+..+.+.+
T Consensus 179 iGi~~~~~~lGPa-~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk 251 (539)
T PF03137_consen 179 IGILYAMSILGPA-LGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPK 251 (539)
T ss_dssp --------------------------------------------------------------------------
T ss_pred hhhhhHHhhccHH-HHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 9999998888885 5766666655433221111 0111 123666666777776666655555544
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00037 Score=61.10 Aligned_cols=131 Identities=12% Similarity=0.036 Sum_probs=88.5
Q ss_pred cHHHHHHHHHHHHhhcCcccccccchhHHhhcCCCccchh-HHHHHHHHhhhhcchhhhhhhccCCCCCCCCcchhhhhh
Q 012910 12 RWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLD-TVSVFKDIGANTGTLSGVLYTYSTSDHSSHHPRQQRLTR 90 (453)
Q Consensus 12 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~~~~~-~i~~~~~~~~~~~~~~g~l~dr~g~~~~~~~p~~g~~~~ 90 (453)
-|.+.+.|++......-.+.. -....++++|+|..+.+ ..+..+.+.+..+|+.|.++||+|
T Consensus 266 fw~~~iicv~yyva~fPFi~l--g~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G--------------- 328 (459)
T KOG4686|consen 266 FWVLVIICVLYYVAWFPFITL--GPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYG--------------- 328 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhhh--hHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhc---------------
Confidence 366666665554432222222 22347899999999988 678888888888999999999999
Q ss_pred ccCchHHHHHHHHHHHH-HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheeccc
Q 012910 91 LLGPWVVLLVGAIQCFA-GYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGS 168 (453)
Q Consensus 91 ~~g~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~ 168 (453)
++...+.+..+..+ +-.+..+ +.+.=++...+.|+..++.-.+-...++...| ++.|++.|.....
T Consensus 329 ---~n~~wv~~a~~~tl~~H~~l~F---------t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsI 396 (459)
T KOG4686|consen 329 ---FNLWWVASACILTLLGHSGLFF---------TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSI 396 (459)
T ss_pred ---ceehhHHHHHHHHHHHhhhHHh---------hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHH
Confidence 77766655444433 3333222 23333466778888888776666777777888 6889999988766
Q ss_pred CCC
Q 012910 169 DSD 171 (453)
Q Consensus 169 ~~~ 171 (453)
.++
T Consensus 397 qNL 399 (459)
T KOG4686|consen 397 QNL 399 (459)
T ss_pred Hhh
Confidence 544
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0046 Score=56.78 Aligned_cols=166 Identities=11% Similarity=-0.071 Sum_probs=89.1
Q ss_pred cHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCch
Q 012910 231 DLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARP 310 (453)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~ 310 (453)
-++++++-|....+.......=..+.+--...+.-+.|.|.+.++-++...+.--.+++.....|+++.....--..-|.
T Consensus 257 ~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka 336 (510)
T KOG3574|consen 257 LLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLEHGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKA 336 (510)
T ss_pred HHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHHcCCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHHHHh
Confidence 34566666766655555444444444444445566678899988887776554445555555555444321000000111
Q ss_pred hHHHHHHHHHHHHHHHHH--hcc-h-------hHHHH-HHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhh
Q 012910 311 LFMVITLAAMSIGHLIIA--SGL-P-------GALYA-GSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPV 379 (453)
Q Consensus 311 ~~~~~~~~~~~i~~~~~~--~~~-~-------~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 379 (453)
...-+........+.... ... . ..+.+ ...+.+...-..+....+..+++.+|..-|+.+.+.|+..++
T Consensus 337 ~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnL 416 (510)
T KOG3574|consen 337 VPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNL 416 (510)
T ss_pred hhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHh
Confidence 112222222222221111 111 0 11111 123334444444555667788889999999999999999999
Q ss_pred hhhhhhhhhhhhheeccC
Q 012910 380 GSYIFSVRVVGYIYDREA 397 (453)
Q Consensus 380 g~~i~g~~~~g~l~~~~g 397 (453)
|+. .-..+...+.|..+
T Consensus 417 Gg~-wp~tv~l~l~D~lt 433 (510)
T KOG3574|consen 417 GGN-WPGTVALWLADGLT 433 (510)
T ss_pred cCC-cHHHHHHHhcccCc
Confidence 986 44557777877654
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00074 Score=67.78 Aligned_cols=163 Identities=17% Similarity=0.162 Sum_probs=119.7
Q ss_pred hhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHhc----------------
Q 012910 267 GSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASG---------------- 330 (453)
Q Consensus 267 ~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~---------------- 330 (453)
+.+++++.+.|++.+.+-+++.+......+..-|. .|.+.+..+.++++++.++...+
T Consensus 125 rRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~------HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~ 198 (735)
T KOG3626|consen 125 RRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG------HRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQ 198 (735)
T ss_pred hhcCCCCCcceeEeeecccchhhhhHhHHHhcccc------CccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhc
Confidence 34699999999999999999999988888888887 66777888888888888776521
Q ss_pred ----c--------------------------------hh-HHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhh
Q 012910 331 ----L--------------------------------PG-ALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTI 373 (453)
Q Consensus 331 ----~--------------------------------~~-~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~ 373 (453)
. ++ .++++.++.|+|....++...+++-|...+++.+...|+.
T Consensus 199 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~ 278 (735)
T KOG3626|consen 199 SVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGIL 278 (735)
T ss_pred cccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHH
Confidence 0 11 2345557788888889999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhhhhhheeccCCC-CCCcccc------ccchHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012910 374 TIANPVGSYIFSVRVVGYIYDREASG-EGNKCTG------THCFMLSFFIMGSATLCGSLAAFGLFLRTK 436 (453)
Q Consensus 374 ~~~~~~g~~i~g~~~~g~l~~~~g~~-~~~~~~~------~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~ 436 (453)
+....+|.. +|-+++++......+. ......+ ..+|...|++.+.+.++..+..+++.++.+
T Consensus 279 ~~~~~lGPa-iGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 279 YSMAILGPA-IGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELP 347 (735)
T ss_pred HHHHHhhhH-HHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCc
Confidence 998888885 6777777765544332 1111111 125777788888888888766665554433
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00062 Score=47.99 Aligned_cols=49 Identities=12% Similarity=0.078 Sum_probs=37.5
Q ss_pred cCcccccccchhHHhhcCCCccchhHHHHHHHHhhh-hcchhhhhhhccC
Q 012910 27 GSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGAN-TGTLSGVLYTYST 75 (453)
Q Consensus 27 g~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~-~~~~~g~l~dr~g 75 (453)
+....+-++.|...++.|+|..|+|.+.....+... ..+++|.++||++
T Consensus 14 ~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~ 63 (77)
T PF12832_consen 14 AALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFG 63 (77)
T ss_pred HHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 334444556677777899999999977666666665 4599999999999
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.076 Score=51.71 Aligned_cols=247 Identities=6% Similarity=-0.178 Sum_probs=120.6
Q ss_pred hhHHhhcCCC-----ccchhHHHHHHHHhhh-h-cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHH
Q 012910 37 PALKTTQHYD-----QTTLDTVSVFKDIGAN-T-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGY 109 (453)
Q Consensus 37 ~~~~~~~~~s-----~~~~~~i~~~~~~~~~-~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~ 109 (453)
-++++.+.++ .+++.++-+...+-.. . .++.+++++|++ |++++-+....+..-.
T Consensus 27 R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~------------------~~~lf~~~~~~F~~~f 88 (472)
T TIGR00769 27 RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILS------------------KEALFYTVISPFLGFF 88 (472)
T ss_pred HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------------------HHHhHHHHHHHHHHHH
Confidence 4567776663 2456666565544333 3 588999999999 9999888877777777
Q ss_pred HHHHHHHhcCCCC--C----------------------CHHHHHHHHHHHHhhhhhHhh-hhhHhHhhhcC-CCccchhh
Q 012910 110 FLMWASVVGLIPR--P----------------------PVPVMCLFMLFAAHGMTFFNT-ADVVTSVRNFP-TYSGTAVG 163 (453)
Q Consensus 110 ~~~~~~~~~~~~~--~----------------------~~~~l~~~r~l~G~g~~~~~~-~~~~~~~~~~p-~~rg~~~g 163 (453)
.++++..-..... + +.|...++-+...+-...... .-....+|.+. +|-.|-.+
T Consensus 89 ~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~ 168 (472)
T TIGR00769 89 ALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYA 168 (472)
T ss_pred HHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 7766652222110 0 122222333444444343333 45566778885 66667777
Q ss_pred eecccCCCCcccc----------------cccccCccc-chhh--h-hhhhhcccccCCCCcccCCCC-CCCCCCCCcCC
Q 012910 164 IMKGSDSDRTSET----------------SFCEEDELT-DDPH--E-MHAEKMHVRQDPVGYHRLPSE-PDVGTDTNDAT 222 (453)
Q Consensus 164 ~~~~~~~~~~~~~----------------~~~~w~~~~-~~~~--~-~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~ 222 (453)
+...+.+++.... ....|.... .... . ...+...+....++...+++. .+.+ +..+++
T Consensus 169 l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~k~ 247 (472)
T TIGR00769 169 LFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVLTDPRSYNPA-LKEKKV 247 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccchh-hccccC
Confidence 7766554422110 001121111 0110 1 111111111111111111000 0000 011111
Q ss_pred cCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhh----hhHHHHHHHHHHHHHhhhhhhhh
Q 012910 223 TSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFE----TSSLISLWSIWNFLGRFGAGYVS 298 (453)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~----~~~~~~~~~i~~~ig~~~~G~l~ 298 (453)
+++.....+.+.++++|..+.+.+...+...+.+.+....-...++..-++.+ .+......++..++..++.+++.
T Consensus 248 k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~ 327 (472)
T TIGR00769 248 KPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVI 327 (472)
T ss_pred CCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223345667788998877777666666555544443333333333333322 23344455666666666778888
Q ss_pred hhhh
Q 012910 299 DYFL 302 (453)
Q Consensus 299 Dr~~ 302 (453)
+|+|
T Consensus 328 ~~~G 331 (472)
T TIGR00769 328 RKYG 331 (472)
T ss_pred HHhh
Confidence 8885
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0021 Score=60.41 Aligned_cols=132 Identities=12% Similarity=0.014 Sum_probs=94.0
Q ss_pred cchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHhc--
Q 012910 253 GSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASG-- 330 (453)
Q Consensus 253 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-- 330 (453)
+....=..++++|.+++|.+....+.......+.+.+-+++.|..+||...|.+ +||+.+........++++++...
T Consensus 46 f~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~G-RRRPfI~~~s~~i~~~l~Lig~aaD 124 (498)
T KOG0637|consen 46 FGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYG-RRRPFILAGSLLIAVSLFLIGYAAD 124 (498)
T ss_pred HHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccc-cccchHHHhhHHHHHHHhhhhhHhh
Confidence 333344577899999999999999999999999999999999999999877775 46666666666667777664421
Q ss_pred -------ch----hHHHHHHHHHH-----HhhhhhhhhhHHHHhHhhccccccc-hhhhhhhhhhhhhhhhhh
Q 012910 331 -------LP----GALYAGSILVG-----VCYGSQWSLMPTIASEIFGVLQMGT-IFNTITIANPVGSYIFSV 386 (453)
Q Consensus 331 -------~~----~~~~~~~~l~g-----~~~g~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~~~~g~~i~g~ 386 (453)
+. ....+..+++| ++........-++..|....+++.+ +.+......++|+. +|-
T Consensus 125 ig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnv-LGY 196 (498)
T KOG0637|consen 125 IGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNV-LGY 196 (498)
T ss_pred hhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcce-eee
Confidence 11 11222333333 3444556666788899988777777 88888888888884 454
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.013 Score=59.75 Aligned_cols=105 Identities=13% Similarity=0.026 Sum_probs=77.3
Q ss_pred ccchhHHhhcCCCccchh-HHHHHHHHhhhhcchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHHH
Q 012910 34 IYSPALKTTQHYDQTTLD-TVSVFKDIGANTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLM 112 (453)
Q Consensus 34 ~~~~~~~~~~~~s~~~~~-~i~~~~~~~~~~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~ 112 (453)
.+...+.+.+|++.++.. ....+..+.++.++++|+++|++ +|+++.+.++.++..+|.+++
T Consensus 9 iLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~-----------------lG~~~tIl~~~ii~~lG~~ll 71 (654)
T TIGR00926 9 ILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGW-----------------LGKFKTILYLSIVYVVGHALL 71 (654)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------hhhHHHHHHHHHHHHHHHHHH
Confidence 344556777899888877 56677777777889999999974 359999999999999999886
Q ss_pred HHHHhcCCC-CCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC
Q 012910 113 WASVVGLIP-RPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP 155 (453)
Q Consensus 113 ~~~~~~~~~-~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p 155 (453)
++....... .......+++-.+..+|.|++-+...+...|.|+
T Consensus 72 ai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~ 115 (654)
T TIGR00926 72 SFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE 115 (654)
T ss_pred HhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcC
Confidence 653111000 0112345577888889999999999999999885
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.02 Score=52.24 Aligned_cols=129 Identities=21% Similarity=0.281 Sum_probs=87.4
Q ss_pred ccHHHhhhhcCCCh--hhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcc--hhH
Q 012910 260 NNISQIGGSLGYSS--FETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGL--PGA 334 (453)
Q Consensus 260 ~~~~~~~~~~g~s~--~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~--~~~ 334 (453)
...+.+..+.+.+. ...+...+...+...++.++.|.+.||. +|+..+..+......+..+.. ..+ ...
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (338)
T COG0477 23 PALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY------GRRKVLIIGLLLFLLGTLLLALAPNVGLAL 96 (338)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc------cchHHHHHHHHHHHHHHHHHHhCccchHHH
Confidence 34555555655554 4788899999999999999999999999 444444544443333333322 222 344
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHhHhhcc-ccccchhhhhhh-hhhhhhhhhhhhhhhhheec
Q 012910 335 LYAGSILVGVCYGSQWSLMPTIASEIFGV-LQMGTIFNTITI-ANPVGSYIFSVRVVGYIYDR 395 (453)
Q Consensus 335 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~-~~~g~~~g~~~~-~~~~g~~i~g~~~~g~l~~~ 395 (453)
+.+.....|++.+...+....++.|.+|+ ++++...+.... ...++.. .+|.+.+.+.+.
T Consensus 97 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 158 (338)
T COG0477 97 LLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLA-LGPLLAGLLLGA 158 (338)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 55555667888888888899999999986 567777777776 4556664 577666666655
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0029 Score=57.92 Aligned_cols=113 Identities=20% Similarity=0.201 Sum_probs=82.9
Q ss_pred ccccchhHHhhcCCCc--cchhHHHHHHHHhhhhc-chhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHH
Q 012910 32 FSIYSPALKTTQHYDQ--TTLDTVSVFKDIGANTG-TLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAG 108 (453)
Q Consensus 32 ~~~~~~~~~~~~~~s~--~~~~~i~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~ 108 (453)
.....+.+..+++.+. .+.++......+....+ ++.|.+.||+| ||+.+..+.....++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g------------------~~~~~~~~~~~~~~~ 82 (338)
T COG0477 21 LSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYG------------------RRKVLIIGLLLFLLG 82 (338)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhcccccc------------------chHHHHHHHHHHHHH
Confidence 3445566677776655 36676666666666654 89999999998 888888777665555
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcCC--Cccchhheecc
Q 012910 109 YFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPT--YSGTAVGIMKG 167 (453)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p~--~rg~~~g~~~~ 167 (453)
.+++.+ ....+.+.+++.|+++|++.+...+....++.+++|+ +|+...+....
T Consensus 83 ~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (338)
T COG0477 83 TLLLAL-----APNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTL 138 (338)
T ss_pred HHHHHh-----CccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 444332 2202588889999999999999999999999999985 78887777655
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.022 Score=53.89 Aligned_cols=159 Identities=10% Similarity=0.060 Sum_probs=106.6
Q ss_pred ccHHHhhh-h-cCCChhhhhHHHHH-HHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhHH
Q 012910 260 NNISQIGG-S-LGYSSFETSSLISL-WSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGAL 335 (453)
Q Consensus 260 ~~~~~~~~-~-~g~s~~~~~~~~~~-~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~ 335 (453)
.++..|+. . .|++.+|...-.-. ..=+..+.-+....+.|.+ +.|++++...+...+...++. .++...+
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l------~Ykpviil~~~~~i~t~~lll~~~sv~~m 97 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL------RYKPVIILQALSYIITWLLLLFGTSVLAM 97 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHHHHHHHHCcHHHH
Confidence 34555554 3 79998887654333 3335566667788999999 667777777666666655554 5666677
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHH
Q 012910 336 YAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFF 415 (453)
Q Consensus 336 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~ 415 (453)
.+.-+..|.+.+. -....+++=...++++.-++.+....+..+|.+ ++.+++-.+....+. .|....+
T Consensus 98 q~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~-~s~~lgQllvs~~~~----------sy~~L~~ 165 (412)
T PF01770_consen 98 QLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRF-ISSLLGQLLVSFGGV----------SYFQLNY 165 (412)
T ss_pred HHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCC----------CHHHHHH
Confidence 7888888887776 445667777778888888888888776666664 344334333332221 1788888
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 012910 416 IMGSATLCGSLAAFGLFLRTK 436 (453)
Q Consensus 416 ~~~~~~~~~~i~~~~~~~~~~ 436 (453)
+..+...+++++.+++...++
T Consensus 166 isl~~~~~a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 166 ISLASVSLALLIALFLPMPKR 186 (412)
T ss_pred HHHHHHHHHHHHHHHcCCCCc
Confidence 888878888877777765443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.044 Score=51.44 Aligned_cols=99 Identities=16% Similarity=0.129 Sum_probs=57.7
Q ss_pred hhhhhHHHHH-HHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH--------hcchhHHHHHHHHHH
Q 012910 273 SFETSSLISL-WSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA--------SGLPGALYAGSILVG 343 (453)
Q Consensus 273 ~~~~~~~~~~-~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~--------~~~~~~~~~~~~l~g 343 (453)
+...-..... +++...+|++...++-++- +|........=...+-++.+. ..+.++......++|
T Consensus 281 ~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~------~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lg 354 (406)
T KOG1479|consen 281 DWYALLLVFLSFNVFDLIGSILAALLTWPD------PRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLG 354 (406)
T ss_pred hhhHHHHHHHHhHHHHHhhhhhhhcccCCC------CceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHH
Confidence 4444455555 8889999977776665443 223222222212222222211 345566777788889
Q ss_pred HhhhhhhhhhHHHHhHhhccccccchhhhhhhhh
Q 012910 344 VCYGSQWSLMPTIASEIFGVLQMGTIFNTITIAN 377 (453)
Q Consensus 344 ~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 377 (453)
+..|-..++...++++.++++++-.+-.++...-
T Consensus 355 lsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl 388 (406)
T KOG1479|consen 355 LSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFL 388 (406)
T ss_pred hccchHhhheehhcCCCCChHHHHHHHHHHHHHH
Confidence 9888888888888888877666544444444333
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.048 Score=54.19 Aligned_cols=139 Identities=19% Similarity=0.180 Sum_probs=75.9
Q ss_pred hhhcchhhecccHHHhhh-hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHH---HHHHHH
Q 012910 250 CGMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAA---MSIGHL 325 (453)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~---~~i~~~ 325 (453)
+..++...+-..+..++. -+|-+....+.+.+.+-.+..+|..+++++.++..+ +. ...-..+ ..++..
T Consensus 25 ~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~------~~-~~~e~~i~l~~~~~~~ 97 (521)
T PRK03612 25 VCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAA------GF-VAVELLLALLGGLSAL 97 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH------HH-HHHHHHHHHHHHHHHH
Confidence 333333333333333333 358888888899999999999999988887644321 11 1111111 111111
Q ss_pred HH-H---hcc--hhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhhee-ccC
Q 012910 326 II-A---SGL--PGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYD-REA 397 (453)
Q Consensus 326 ~~-~---~~~--~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~-~~g 397 (453)
++ . ... ....+...++.++..|+..|....+..+.. .++.+...|-.+....+|+. +|.++.+++.- ..|
T Consensus 98 ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~-~G~l~~~~vLlp~lG 174 (521)
T PRK03612 98 ILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGAL-VGGLAFPFLLLPRLG 174 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHH-HHHHHHHHHHHHhcc
Confidence 11 1 100 112233344567777777776655554322 23456777777888888885 57777776554 556
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.012 Score=42.04 Aligned_cols=68 Identities=13% Similarity=0.017 Sum_probs=56.5
Q ss_pred hhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHh
Q 012910 256 LATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS 329 (453)
Q Consensus 256 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~ 329 (453)
+.+...+|.+.++.++|..+++++.+...++..+|.+...++.++. +++..+..+.+...+..+....
T Consensus 9 FayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~------~~~~~~~~~l~~~~~~~~~ma~ 76 (85)
T PF06779_consen 9 FAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS------RPRRLLRAGLLLTVLSTAAMAL 76 (85)
T ss_pred HHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHHHHHHHHHHH
Confidence 3445568888899999999999999999999999999999988876 5566777777777777777663
|
Note that many members are hypothetical proteins. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0095 Score=48.42 Aligned_cols=87 Identities=11% Similarity=0.071 Sum_probs=67.9
Q ss_pred HHHHHHHhhhhcchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 012910 53 VSVFKDIGANTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFM 132 (453)
Q Consensus 53 i~~~~~~~~~~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 132 (453)
....+....+..++...+.+++| +|+.+++|.+.+.+-..... . ++.+.++..-
T Consensus 43 lai~Y~~~~~s~l~~P~iv~~lg------------------~K~sm~lg~~~y~~y~~~~~------~--~~~~~l~~~s 96 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVNKLG------------------PKWSMILGSLGYAIYIASFF------Y--PNSYTLYPAS 96 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHh------------------hHHHHHHHHHHHHHHHHHHH------h--hhHHHHHHHH
Confidence 34444555555677888999999 99999999988875554421 1 5788889999
Q ss_pred HHHHhhhhhHhhhhhHhHhhhcC-CCccchhhee
Q 012910 133 LFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIM 165 (453)
Q Consensus 133 ~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~ 165 (453)
++.|+|.+..+.+.-.++.+..+ ++|++..++.
T Consensus 97 ~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~if 130 (156)
T PF05978_consen 97 ALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIF 130 (156)
T ss_pred HHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHH
Confidence 99999999999999999988874 7788877765
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0087 Score=57.05 Aligned_cols=107 Identities=20% Similarity=0.283 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHH---hc-ch------hHHHHHHHHHHHhhhhhhhhhHHHHhHhhcccc---ccchhhhhhhhhh
Q 012910 312 FMVITLAAMSIGHLIIA---SG-LP------GALYAGSILVGVCYGSQWSLMPTIASEIFGVLQ---MGTIFNTITIANP 378 (453)
Q Consensus 312 ~~~~~~~~~~i~~~~~~---~~-~~------~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~---~g~~~g~~~~~~~ 378 (453)
.+..+.++..+|.+++. .+ .. ..++++..++++|.|+.-+...++..|.+++++ +...+...+.+.+
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in 82 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGIN 82 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHh
Confidence 45667777777777733 11 11 367888889999999999999999999998663 3446667779999
Q ss_pred hhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 012910 379 VGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGL 431 (453)
Q Consensus 379 ~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~ 431 (453)
+|+. +++.+.+++.++.+ |...|.+.++..+++.+..+.-
T Consensus 83 ~G~~-~~~~~~~~i~~~~~------------~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 83 IGSL-FSPTLVPYIQQNYG------------WFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHH-HHHHCCCHHHHCS-------------HHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhH-hhcccchhhccccc------------hhhhhhHHHHHHHHHHHHHHhC
Confidence 9996 68888888888777 8999999998888887655544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.61 Score=45.12 Aligned_cols=52 Identities=12% Similarity=0.129 Sum_probs=37.7
Q ss_pred HHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheec
Q 012910 343 GVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDR 395 (453)
Q Consensus 343 g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~ 395 (453)
.+.....+....+.-+++.+|..-|+.+-+.|+..++|+. ....+.=++.|.
T Consensus 416 sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGt-WP~~~vL~lVD~ 467 (544)
T PF13000_consen 416 SFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGT-WPRTFVLWLVDY 467 (544)
T ss_pred HHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCC-chHHHHHHHhhh
Confidence 3444445566667777888889999999999999999996 455455555554
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.21 Score=48.77 Aligned_cols=116 Identities=10% Similarity=-0.006 Sum_probs=71.6
Q ss_pred ChhhhhHHHHHHHHHHHHH-hhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH---h--cc--------------
Q 012910 272 SSFETSSLISLWSIWNFLG-RFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA---S--GL-------------- 331 (453)
Q Consensus 272 s~~~~~~~~~~~~i~~~ig-~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~---~--~~-------------- 331 (453)
+.+...++.+..-+...+. .++.+++++|+ +|+.+.-.........+.++. . .+
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~------~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~ 114 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL------SKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSL 114 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcC------CHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhh
Confidence 3456666766665655555 78899999999 555555554444443333322 1 10
Q ss_pred -------------hhHHHHHHHHHHHhhhhhhh-hhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhhee
Q 012910 332 -------------PGALYAGSILVGVCYGSQWS-LMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYD 394 (453)
Q Consensus 332 -------------~~~~~~~~~l~g~~~g~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~ 394 (453)
.|...+..+...+-.....+ ..+..+.|.+.+++..+-+++...+.++|.. +++.+...+.+
T Consensus 115 ~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i-~sg~~~~~~~~ 190 (472)
T TIGR00769 115 LPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALI-FSGRTIKYFSK 190 (472)
T ss_pred cchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 11111111222222223333 6778899999999999999999999999996 57767776653
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.015 Score=56.18 Aligned_cols=125 Identities=11% Similarity=-0.055 Sum_probs=85.1
Q ss_pred hhcCCCccchhHHHHHHHHhhhhc-chhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcC
Q 012910 41 TTQHYDQTTLDTVSVFKDIGANTG-TLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGL 119 (453)
Q Consensus 41 ~~~~~s~~~~~~i~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 119 (453)
+|.+-...-.|..+.....+-+.. ++.+++..|+| +-+++.+++.+..+=.+.....
T Consensus 399 ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiG------------------Hv~v~~lgLa~~~~Rf~~~S~L---- 456 (618)
T KOG3762|consen 399 EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIG------------------HVNVMYLGLACNVGRFLYYSYL---- 456 (618)
T ss_pred hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhc------------------ccceeeehhhHHHHHHHHHHHh----
Confidence 455544444454444444444443 56777777777 9999998888887776664333
Q ss_pred CCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheeccc-CCC----Ccc----cccccccCcccchhh
Q 012910 120 IPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGS-DSD----RTS----ETSFCEEDELTDDPH 189 (453)
Q Consensus 120 ~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~-~~~----~~~----~~~~~~w~~~~~~~~ 189 (453)
.|.|..+-.-+++|+..+.++....++++...| +-|..+-+++... .|+ +.. .....+-+..|..+.
T Consensus 457 ---~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~g 533 (618)
T KOG3762|consen 457 ---QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFG 533 (618)
T ss_pred ---cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHH
Confidence 599999999999999999999999999999986 7788888887543 233 221 112255666666653
Q ss_pred h
Q 012910 190 E 190 (453)
Q Consensus 190 ~ 190 (453)
+
T Consensus 534 i 534 (618)
T KOG3762|consen 534 I 534 (618)
T ss_pred H
Confidence 3
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.22 E-value=1.3 Score=44.56 Aligned_cols=106 Identities=16% Similarity=0.142 Sum_probs=73.6
Q ss_pred cccchhHHhhcCCCccchh-HHHHHHHHhhhhcchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHH
Q 012910 33 SIYSPALKTTQHYDQTTLD-TVSVFKDIGANTGTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFL 111 (453)
Q Consensus 33 ~~~~~~~~~~~~~s~~~~~-~i~~~~~~~~~~~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~ 111 (453)
......+.+++|.+..++. .+..+........+.++.++|-|- ||-+++.++.++..+|..+
T Consensus 58 ~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~-----------------gry~tI~~~s~i~~~G~~~ 120 (571)
T KOG1237|consen 58 SNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFL-----------------GRYFTINIGSLISLLGLFG 120 (571)
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-----------------HHHHHHHHHHHHHHHHHHH
Confidence 4455678888988876555 344444444455688999999885 4889999999999999766
Q ss_pred HHHHHhcC--C-------------CCCC---HHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC
Q 012910 112 MWASVVGL--I-------------PRPP---VPVMCLFMLFAAHGMTFFNTADVVTSVRNFP 155 (453)
Q Consensus 112 ~~~~~~~~--~-------------~~~~---~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p 155 (453)
..+..... . ..++ ...++...-+..+|.|..-+.....-+|-|+
T Consensus 121 lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd 182 (571)
T KOG1237|consen 121 LTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFD 182 (571)
T ss_pred HHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccC
Confidence 65541111 0 0011 1355567777888999888888888888886
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.74 Score=44.73 Aligned_cols=103 Identities=15% Similarity=0.044 Sum_probs=61.9
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHH--HHHHHHHHHHHHh----------cchhHHHHHHHHH
Q 012910 275 ETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVIT--LAAMSIGHLIIAS----------GLPGALYAGSILV 342 (453)
Q Consensus 275 ~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~--~~~~~i~~~~~~~----------~~~~~~~~~~~l~ 342 (453)
..-..+..++++..+||.+..+.. .-.+| .| ++.... =++.+..+++... ++.+..++..+++
T Consensus 308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~---~~-~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~ 382 (437)
T TIGR00939 308 YPIICFLLFNLFDWLGRSLTSKFM-WPDED---SR-WLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLF 382 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeE-eeCCC---cc-chHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHH
Confidence 445677889999999998665431 11111 12 222221 1222222222221 2334556678889
Q ss_pred HHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhh
Q 012910 343 GVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSY 382 (453)
Q Consensus 343 g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 382 (453)
|+..|-..+....+..+..+++++-.+-.++..+-.+|-.
T Consensus 383 gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~ 422 (437)
T TIGR00939 383 GFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLA 422 (437)
T ss_pred HHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888888888888887777776666666555553
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.28 Score=43.07 Aligned_cols=24 Identities=8% Similarity=0.004 Sum_probs=18.1
Q ss_pred CCccHHHHhhhhHHHHHHHHHHhh
Q 012910 228 GDLDLLQAICTLEFWILSFAMACG 251 (453)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~ 251 (453)
++.+..+.+|++..|...+.+...
T Consensus 83 ~~~s~~~~LK~K~tw~w~~~Yg~w 106 (267)
T PF07672_consen 83 KKPSYKSILKEKETWKWILIYGIW 106 (267)
T ss_pred ccchHHHHHccchHHHHHHHHHHH
Confidence 345788999999988877666554
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.27 Score=49.30 Aligned_cols=163 Identities=18% Similarity=0.188 Sum_probs=112.4
Q ss_pred hcchhhecccHHHhh-hhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHh-
Q 012910 252 MGSGLATVNNISQIG-GSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS- 329 (453)
Q Consensus 252 ~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~- 329 (453)
-.+.+++..++-.|+ .+++.+...+.-....+.-......+++++++|-+- +|.+.+.++..+..++.+++..
T Consensus 50 ~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~-----gry~tI~~~s~i~~~G~~~lt~~ 124 (571)
T KOG1237|consen 50 RLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFL-----GRYFTINIGSLISLLGLFGLTLS 124 (571)
T ss_pred HHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555 467877788888888888888899999999999885 7788888888777777655330
Q ss_pred -------c-------c------h-----hHHHHHHHHHHHhhhhhhhhhHHHHhHhhcc---cc---ccchhhhhhhhhh
Q 012910 330 -------G-------L------P-----GALYAGSILVGVCYGSQWSLMPTIASEIFGV---LQ---MGTIFNTITIANP 378 (453)
Q Consensus 330 -------~-------~------~-----~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~---~~---~g~~~g~~~~~~~ 378 (453)
+ . + ..++....+..+|.|+.-+...+.-+|.+++ +. ...-+...+...+
T Consensus 125 a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~ 204 (571)
T KOG1237|consen 125 AMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQN 204 (571)
T ss_pred HHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHH
Confidence 0 0 0 1344555566678888889999999998882 22 2244555667778
Q ss_pred hhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHh
Q 012910 379 VGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLF 432 (453)
Q Consensus 379 ~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~ 432 (453)
+|.. ++..+..++.|..+ |...|.+..++..++.++.+...
T Consensus 205 ~g~l-~a~t~~vyiq~~~~------------w~lgf~i~~~~~~lai~iF~~g~ 245 (571)
T KOG1237|consen 205 GGAL-LAQTVLVYIQDNVG------------WKLGFGIPTVLNALAILIFLPGF 245 (571)
T ss_pred HHHH-HHHHHHHhhhhccc------------ceeeccHHHHHHHHHHHHHHcCc
Confidence 8875 45545555656555 88889888888888876665543
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.07 E-value=1.8 Score=40.49 Aligned_cols=136 Identities=16% Similarity=0.106 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhh-----hhhhccccCchhHHH
Q 012910 240 EFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSD-----YFLHVKEWARPLFMV 314 (453)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~D-----r~~~~~~~~r~~~~~ 314 (453)
++..+...+.+ .+.-.+....+|.+++..|.|-++.+.....+.= .--.+++..+.| |+|||+.| +.-
T Consensus 32 ~illLl~LYll-QGiP~GL~~~iP~lL~ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~GrrksW----vvp 104 (510)
T KOG3574|consen 32 SILLLLFLYLL-QGIPLGLIGAIPLLLQAKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKSW----VVP 104 (510)
T ss_pred hHHHHHHHHHH-cCCchhHhhhhHHHhcCCCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhccccce----eee
Confidence 34444444443 4444555568899999888776555543332221 123567888888 88776544 222
Q ss_pred HHHHHHHHHHHHHHhc---------chh--HHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhh
Q 012910 315 ITLAAMSIGHLIIASG---------LPG--ALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSY 382 (453)
Q Consensus 315 ~~~~~~~i~~~~~~~~---------~~~--~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 382 (453)
.-.++.....++.... .+. ..-+..+++.+.....-...-.++-.+..+++.|-+.-....+...|-+
T Consensus 105 ~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~Gyf 183 (510)
T KOG3574|consen 105 CQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYF 183 (510)
T ss_pred hHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHH
Confidence 2222222222221111 111 1112334444444443344445566666677776665555555555554
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.48 Score=45.84 Aligned_cols=102 Identities=10% Similarity=-0.033 Sum_probs=85.0
Q ss_pred hhhHH-HHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhhhhh
Q 012910 275 ETSSL-ISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLM 353 (453)
Q Consensus 275 ~~~~~-~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~ 353 (453)
.+|+. .++......+..++.+.+.|++ +.|+.+.++......-...+...+.+..+...++.|+|.+..+...
T Consensus 50 ~aGy~~~aiiY~~ftv~~l~~psiv~~i------~~K~~lv~ga~~y~~f~~gfl~~N~y~~yfssallG~Gaallw~Gq 123 (461)
T KOG3098|consen 50 YAGYYGQAIIYAFFTVSCLFAPSIVNFL------GPKWALVIGATCYAAFPLGFLFPNSYYLYFSSALLGFGAALLWTGQ 123 (461)
T ss_pred CccHHHHHHHHHHHHHHHHhhHHHHHHh------hHHHHHHHHhHHHHHHHHHHHhcchHHHHHHHHHhhhhHHheeccc
Confidence 34443 7888888889999999999999 7889999988888888877777788889999999999999989988
Q ss_pred HHHHhHhhccccccchhhhhhhhhhhhhh
Q 012910 354 PTIASEIFGVLQMGTIFNTITIANPVGSY 382 (453)
Q Consensus 354 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 382 (453)
..+.+|...+|...+..++.......+.+
T Consensus 124 G~ylt~~st~~tie~Nisi~Wai~~~~li 152 (461)
T KOG3098|consen 124 GGYLTSNSTRETIERNISIFWAIGQSSLI 152 (461)
T ss_pred ceehhhcCChhhHHHHHHHHHHHHHHHHH
Confidence 89999999988888888877655555553
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=93.69 E-value=1.8 Score=41.80 Aligned_cols=172 Identities=15% Similarity=0.050 Sum_probs=87.9
Q ss_pred HHHHHHHHHhhhcchhhecccHHHhhhhc-CCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHH
Q 012910 241 FWILSFAMACGMGSGLATVNNISQIGGSL-GYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAA 319 (453)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~ 319 (453)
.+.+.+..++.....-++-+..+.++.++ .-+-...+.....-.+..++..+..|...||. .|.+++..+.+.
T Consensus 4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~------~Rl~~~~~~l~~ 77 (432)
T PF06963_consen 4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS------PRLKVIRTSLVV 77 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC------cchhhHHHHHHH
Confidence 35556666666555555666677777765 22444455555566667777778889999998 445444443332
Q ss_pred HH-------HHHHH-HHhcc-----hhHH---HHHHHHHHHhhhhhhhhhHHH------HhHhh--ccccccchhhhhhh
Q 012910 320 MS-------IGHLI-IASGL-----PGAL---YAGSILVGVCYGSQWSLMPTI------ASEIF--GVLQMGTIFNTITI 375 (453)
Q Consensus 320 ~~-------i~~~~-~~~~~-----~~~~---~~~~~l~g~~~g~~~~~~~~~------~~~~~--~~~~~g~~~g~~~~ 375 (453)
.- ..+.. +.... .+.. +....+.+. ..-........ +..+. +++......+.+.-
T Consensus 78 Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~-i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRR 156 (432)
T PF06963_consen 78 QNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGA-IERLASIANTIAVERDWVVVIAGGDPGALARMNATMRR 156 (432)
T ss_pred HHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHH-HHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHH
Confidence 21 11111 11111 1111 111112221 11111111111 11122 11222223333332
Q ss_pred hhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHh
Q 012910 376 ANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLF 432 (453)
Q Consensus 376 ~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~ 432 (453)
.=.+.. +++|++.|.+.+..+ +.....+.++.++++.++=.++.
T Consensus 157 IDL~ck-llaPl~vG~l~t~~s------------~~~~~~~i~~~N~~S~~vEy~~l 200 (432)
T PF06963_consen 157 IDLFCK-LLAPLFVGLLMTFAS------------PVIAAIFIAGWNLASVFVEYFLL 200 (432)
T ss_pred HHHHHH-HHHHHHHHHHhhccC------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444 578989999988766 57888888888888877655443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.09 Score=45.83 Aligned_cols=141 Identities=8% Similarity=0.040 Sum_probs=76.8
Q ss_pred ccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhh-hcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccC
Q 012910 230 LDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGG-SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWA 308 (453)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~ 308 (453)
.++...+++-.++.+.+.+.+.-...+.-..+++.+.. ++.++....+++-.+..++++.-+.+..-. -.-++|
T Consensus 192 m~W~~WF~~v~~YQiAllYmLsRL~iNiSQaYlaFfviddlqm~qsakAllP~v~Yl~SF~VS~v~~ei-pwngkr---- 266 (412)
T KOG4830|consen 192 MHWTSWFGHVQFYQIALLYMLSRLYINISQAYLAFFVIDDLQMEQSAKALLPMVAYLSSFSVSMVNSEI-PWNGKR---- 266 (412)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHhhhhhhheeeEEeehhhHHHHHhhhhHHHHHHhhhhHHhhcccC-CcCcce----
Confidence 45566677888888888888776666666666777664 457776666676666666666554432211 011111
Q ss_pred chhHHHHHHHHHHHHH---HHHHhcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhcccc--ccchhhhhhh
Q 012910 309 RPLFMVITLAAMSIGH---LIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQ--MGTIFNTITI 375 (453)
Q Consensus 309 r~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~--~g~~~g~~~~ 375 (453)
.+.....+.++...+. ++....-...++....++|+...........+.++....+. .+..+|.++.
T Consensus 267 lKayYsaGgiiwifcga~ilLlpr~i~symyAisvfIGIAnAimlvtslsitavli~~~~~~~aFv~GamSF 338 (412)
T KOG4830|consen 267 LKAYYSAGGIIWIFCGAVILLLPRGIKSYMYAISVFIGIANAIMLVTSLSITAVLINKNTESGAFVYGAMSF 338 (412)
T ss_pred eeeeeecccHHHHHhhhheeecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEEehHHH
Confidence 1222223333222222 22221222245556667788877776666666666665443 3345555553
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.51 Score=41.65 Aligned_cols=125 Identities=13% Similarity=0.032 Sum_probs=70.6
Q ss_pred hhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHh
Q 012910 266 GGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVC 345 (453)
Q Consensus 266 ~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~g~~ 345 (453)
++.+|+...+.+.++.......+....+.|-+.||.|| +.....-++..+++++-=..+....+.+..++-|+.
T Consensus 64 YstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGR------KracvtycitYiLsCiTKhSpqYkVLmVGR~LGGia 137 (454)
T KOG4332|consen 64 YSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGR------KRACVTYCITYILSCITKHSPQYKVLMVGRVLGGIA 137 (454)
T ss_pred ehhcCccCCccceeeecccchHHHHHHHHHHHHhhhcc------ccceeeehHHHHHHHHhhcCCceEEEeehhhhhhHH
Confidence 45678888888877666555666666777899999954 433322223333333222234445677888888888
Q ss_pred hhhhhhhhHH-HHhHhhccccccc-----hhh-hhhhhhhhhhhhhhhhhhhhheeccC
Q 012910 346 YGSQWSLMPT-IASEIFGVLQMGT-----IFN-TITIANPVGSYIFSVRVVGYIYDREA 397 (453)
Q Consensus 346 ~g~~~~~~~~-~~~~~~~~~~~g~-----~~g-~~~~~~~~g~~i~g~~~~g~l~~~~g 397 (453)
....++..-+ ++.|...++.... .++ ....++.+-+. ++.+.+..+.|..+
T Consensus 138 TsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAi-iaGlfgn~lvd~~s 195 (454)
T KOG4332|consen 138 TSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAI-IAGLFGNLLVDTFS 195 (454)
T ss_pred HHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHH-HHHHHHHHHHHHhc
Confidence 8888877765 4666654333221 111 11134444443 33334555666654
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=92.04 E-value=1.7 Score=41.42 Aligned_cols=130 Identities=12% Similarity=0.018 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHhhhhhhhhhHHHH
Q 012910 279 LISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS-GLPGALYAGSILVGVCYGSQWSLMPTIA 357 (453)
Q Consensus 279 ~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~l~g~~~g~~~~~~~~~~ 357 (453)
+...-.+-+.+..++..++.+|+.. ..=.....++..+++++.+. ++.+.-++..++.+++.|..-.....+
T Consensus 64 Vlladi~P~l~~Kl~aP~fi~~v~y------~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l- 136 (402)
T PF02487_consen 64 VLLADILPSLLVKLIAPFFIHRVPY------WIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL- 136 (402)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhccc------hHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-
Confidence 3444445566667778888888732 22234455566667776663 555566677778888877777666665
Q ss_pred hHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 012910 358 SEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGL 431 (453)
Q Consensus 358 ~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~ 431 (453)
+..+++. ..+....+.+.++. +|+...-.+.+ .+-. .+.++..+..+.++-.+..+++
T Consensus 137 t~~y~~~----~l~~wssGTG~aGl-~Ga~~y~~lT~-~g~s----------~~~tll~~~~lp~~~~~~~f~~ 194 (402)
T PF02487_consen 137 THFYGKS----SLSAWSSGTGGAGL-VGALYYLGLTT-LGLS----------PRTTLLIMLVLPAIFLLSYFFL 194 (402)
T ss_pred HHhcCcc----ccccccCCcChhhH-HHHHHHHHHHH-hCcC----------HHHHHHHHHHHHHHHHHHHHHh
Confidence 4456532 33444455555553 45544433433 3321 4667777766655444333333
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.63 E-value=14 Score=35.15 Aligned_cols=61 Identities=7% Similarity=0.035 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhhcchhhecccHHHhhhhc-CCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 012910 241 FWILSFAMACGMGSGLATVNNISQIGGSL-GYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLH 303 (453)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~ 303 (453)
++..++...-.....+.+++..+++.+.+ +.+. +......+.+.+.+...+.-.+--+...
T Consensus 20 ~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~~~ 81 (406)
T KOG1479|consen 20 YLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFLNT 81 (406)
T ss_pred HHHHHHHhcccccchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33443333334455666667666666655 3333 4444444555555555555444444433
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=89.15 E-value=1.8 Score=41.24 Aligned_cols=62 Identities=13% Similarity=0.105 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcCCC
Q 012910 96 VVLLVGAIQCFAGYFLMWASVVGLI--PRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFPTY 157 (453)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p~~ 157 (453)
++++++.++..+|.+++.++-.... +..+.+.++++-.+.++|.|+.-+...+..+|.|+++
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~ 65 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDED 65 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTT
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhccc
Confidence 5778899999999998666511111 1113467888999999999999999999999999643
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.57 E-value=4 Score=37.06 Aligned_cols=53 Identities=9% Similarity=0.055 Sum_probs=35.7
Q ss_pred cchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhh
Q 012910 330 GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSY 382 (453)
Q Consensus 330 ~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 382 (453)
++.+...+..+.=|+..|..+....--+.+-.++++|--+++....+-.+|-.
T Consensus 340 psi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~ 392 (409)
T KOG3880|consen 340 PSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIF 392 (409)
T ss_pred cHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHH
Confidence 34444444445557766666666665566666778998999988887777765
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=85.61 E-value=21 Score=35.38 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=33.5
Q ss_pred hhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhhee
Q 012910 352 LMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYD 394 (453)
Q Consensus 352 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~ 394 (453)
..+..+.|.+..++..+-+++...+.++|.. ++..+...+.+
T Consensus 164 LFW~fAN~itt~~eAKRfYpl~g~ganigli-~sG~~~~~~~~ 205 (491)
T PF03219_consen 164 LFWGFANEITTVEEAKRFYPLFGLGANIGLI-FSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4578889999999999999999999999996 45545555555
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=83.85 E-value=0.37 Score=44.54 Aligned_cols=99 Identities=14% Similarity=0.110 Sum_probs=3.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHH--HHHHHHHHHHHH-----------hcchhHHHHHHHHHHH
Q 012910 278 SLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVIT--LAAMSIGHLIIA-----------SGLPGALYAGSILVGV 344 (453)
Q Consensus 278 ~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~--~~~~~i~~~~~~-----------~~~~~~~~~~~~l~g~ 344 (453)
..+..++++..+||.+.++.- +..+ +++++...+ =++.+..+++.. .++.+..++..+++|+
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~--~~~~---~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~ 260 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPR--WPGP---SPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGF 260 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeE--eccc---ccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHH
Confidence 456789999999999888642 2111 223332221 111211111111 1233445566778899
Q ss_pred hhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhh
Q 012910 345 CYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGS 381 (453)
Q Consensus 345 ~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 381 (453)
..|-..+....+.++..+++++..+-.++.+.-.+|-
T Consensus 261 TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl 297 (309)
T PF01733_consen 261 TNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGL 297 (309)
T ss_dssp ------HHHH---------------------------
T ss_pred ccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 9998888888888888887777777666665555554
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.75 E-value=49 Score=30.89 Aligned_cols=115 Identities=23% Similarity=0.191 Sum_probs=59.8
Q ss_pred HHHHHHhhhcchhhecccHHHhhhhc-CCChhhhhHHHHHHHHHHHHHhhhhhhhhhhh-hhccccCchhHH-HHHHHHH
Q 012910 244 LSFAMACGMGSGLATVNNISQIGGSL-GYSSFETSSLISLWSIWNFLGRFGAGYVSDYF-LHVKEWARPLFM-VITLAAM 320 (453)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~-~~~~~~~r~~~~-~~~~~~~ 320 (453)
+.++.+++..++...-..+......+ |-+..+.+.+.+.+-.+..+|+.+.-++.|.- ..|+- .-..++ .++.+-.
T Consensus 12 L~laVf~~aa~GlvyElal~tLatyLlG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv-~vElllgligg~Sa 90 (508)
T COG4262 12 LLLAVFVCAACGLVYELALGTLATYLLGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFV-DVELLLGLIGGVSA 90 (508)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhcCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHH-HHHHHHHHhccchH
Confidence 33344444444443333334444433 55566777777777777777777766655533 11100 000111 1111112
Q ss_pred HHHHHHHHh---cchhHHHHHHHHHHHhhhhhhhhhHHHHhH
Q 012910 321 SIGHLIIAS---GLPGALYAGSILVGVCYGSQWSLMPTIASE 359 (453)
Q Consensus 321 ~i~~~~~~~---~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~ 359 (453)
.+.++.++. ++.+.++...+++|.-.|.-.|....+...
T Consensus 91 ~~ly~~FA~~~~~~~~Vly~lt~vIG~LVG~EiPL~mrml~~ 132 (508)
T COG4262 91 AALYLLFALESAPSRLVLYALTAVIGVLVGAEIPLLMRMLQR 132 (508)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 222223332 234567778888999899888888777665
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=80.64 E-value=19 Score=35.55 Aligned_cols=75 Identities=8% Similarity=-0.153 Sum_probs=42.9
Q ss_pred CccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhh----hhHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 012910 229 DLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFE----TSSLISLWSIWNFLGRFGAGYVSDYFLH 303 (453)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~----~~~~~~~~~i~~~ig~~~~G~l~Dr~~~ 303 (453)
..+.+.++++|....+++...++......+-...-...++.--++.+ .|...+..++...+..++++.+.+|+|-
T Consensus 270 ~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW 348 (491)
T PF03219_consen 270 KESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGW 348 (491)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34566677888777777666665555444433333333333222222 2344556666666667777777777753
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 453 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 6e-04 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 6e-04
Identities = 26/175 (14%), Positives = 51/175 (29%), Gaps = 21/175 (12%)
Query: 268 SLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARP--LFMVITLAAMSIGHL 325
++ ++S L+ G G++SD FM + A + +
Sbjct: 282 VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR-GNRGATGVFFMTLVTIATIVYWM 340
Query: 326 IIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGT---IFNTITIANPVGSY 382
A + ++ + YG L+ A E+ GT +G
Sbjct: 341 NPAGNPTVDMICMIVIGFLIYGPV-MLIGLHALELAPKKAAGTAAGFTG--LFGY-LGGS 396
Query: 383 IFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKR 437
+ + +VGY D ++G + L L + +R
Sbjct: 397 VAASAIVGYTVDF-----------FGWDGGFMVMIGGSILAVILLIVVMIGEKRR 440
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 453 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.96 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.95 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.95 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.93 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.92 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.55 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.55 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.49 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.46 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.41 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.13 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.97 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-34 Score=279.37 Aligned_cols=384 Identities=14% Similarity=0.067 Sum_probs=279.4
Q ss_pred cccHHHHHHHHHHHHhhcC-cccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhh
Q 012910 10 NTRWVSTVASIWIQCTSGS-LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQR 87 (453)
Q Consensus 10 ~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~ 87 (453)
+++|..+....+..+..+. .+.++.+.|.+.+|+ .|..+.+++.+.+.++... ++++|+++||+|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g------------ 90 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSN------------ 90 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcC------------
Confidence 3456666665555555444 566788889999999 9999999888888777775 599999999999
Q ss_pred hhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheec
Q 012910 88 LTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMK 166 (453)
Q Consensus 88 ~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~ 166 (453)
||+++.++.++.+++.+++++.... . ++++.+++.|+++|++.+...+...+++.|++| ++|++++++..
T Consensus 91 ------~r~~l~~~~~~~~~~~~~~~~~~~~-~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 161 (451)
T 1pw4_A 91 ------PRVFLPAGLILAAAVMLFMGFVPWA-T--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWN 161 (451)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHCHHH-H--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHH
T ss_pred ------chHHHHHHHHHHHHHHHHHHhhhhc-c--ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHH
Confidence 9999999999999999997661000 2 688999999999999999999999999999997 88999999987
Q ss_pred ccCCCCcc--c------ccccc-cCcccchhhhhhhhhc-----ccccCCCCcccCCCCCCCCCCC-Cc-CCcCCCCCCc
Q 012910 167 GSDSDRTS--E------TSFCE-EDELTDDPHEMHAEKM-----HVRQDPVGYHRLPSEPDVGTDT-ND-ATTSLWGGDL 230 (453)
Q Consensus 167 ~~~~~~~~--~------~~~~~-w~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~ 230 (453)
.+.+++.. + ....+ ||+.|........+.. .+++.+++...++.++.++.++ +. +.+++.....
T Consensus 162 ~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (451)
T 1pw4_A 162 CAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAK 241 (451)
T ss_dssp HHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccc
Confidence 65544211 1 12256 9999987654332211 1222222111111111000000 00 0000011111
Q ss_pred c--HHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhcccc
Q 012910 231 D--LLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEW 307 (453)
Q Consensus 231 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~ 307 (453)
+ .++.+++|.++...+..++.......+..++|.++++ .|+++.+++...+...++.++++++.|++.||+.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~---- 317 (451)
T 1pw4_A 242 QIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR---- 317 (451)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST----
T ss_pred cchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 1 4677889999999998888888888888899999987 79999999999999999999999999999999811
Q ss_pred CchhHHHHHHHHHH-HHHHHHHhc---chhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhh-hhh
Q 012910 308 ARPLFMVITLAAMS-IGHLIIASG---LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPV-GSY 382 (453)
Q Consensus 308 ~r~~~~~~~~~~~~-i~~~~~~~~---~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~ 382 (453)
+|++.+..+..+.. ++.+++... +.+...+..++.|++.+...+....++.|.+|+++++++.|+.+....+ |..
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~ 397 (451)
T 1pw4_A 318 GNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSV 397 (451)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHH
Confidence 22334444444433 555555422 4445566677888888888888889999999999999999999999999 885
Q ss_pred hhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHh
Q 012910 383 IFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLF 432 (453)
Q Consensus 383 i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~ 432 (453)
++|.+.|.+.|..+ |+..|++.+++.+++.++.+...
T Consensus 398 -~~~~~~g~l~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 398 -AASAIVGYTVDFFG------------WDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp -HHHHHHHHHHHSSC------------SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhcC------------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999877 79999999888888876665544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=271.85 Aligned_cols=363 Identities=12% Similarity=0.016 Sum_probs=270.7
Q ss_pred ccccHHHHHHHHHHHHhhcC-cccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchh
Q 012910 9 LNTRWVSTVASIWIQCTSGS-LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQ 86 (453)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g 86 (453)
++++|..+....+..+..+. ...++++.|.+++++|+|..+.+++.+.+.++..+ ++++|+++||+|
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g----------- 89 (438)
T 3o7q_A 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLS----------- 89 (438)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSC-----------
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc-----------
Confidence 34455555555555555554 46778889999999999999999888888888775 599999999999
Q ss_pred hhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhhee
Q 012910 87 RLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIM 165 (453)
Q Consensus 87 ~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~ 165 (453)
||++++++.++.+++.+++... ++. ++++.+++.|+++|++.+...+...+++.|++| ++|++++++.
T Consensus 90 -------~r~~l~~~~~~~~~~~~~~~~~--~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 158 (438)
T 3o7q_A 90 -------YKAGIITGLFLYALGAALFWPA--AEI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLA 158 (438)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHH--HHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred -------chHHHHHHHHHHHHHHHHHHhc--ccc--ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHH
Confidence 9999999999999999986321 333 599999999999999999999999999999997 8999999988
Q ss_pred cccCCCCc--------ccc-cccc-------------------------cCcccchhhhhhhhhcc---cccCCCCcccC
Q 012910 166 KGSDSDRT--------SET-SFCE-------------------------EDELTDDPHEMHAEKMH---VRQDPVGYHRL 208 (453)
Q Consensus 166 ~~~~~~~~--------~~~-~~~~-------------------------w~~~~~~~~~~~~~~~~---l~~~~~~~~~~ 208 (453)
..+.+++. ... ...+ ||+.|........+... ....|+.+.++
T Consensus 159 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 238 (438)
T 3o7q_A 159 QTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN 238 (438)
T ss_dssp HHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc
Confidence 76655421 111 1112 78877655433322221 11112111100
Q ss_pred CCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHh-hhhc-CCChhhhhHHHHHHHHH
Q 012910 209 PSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQI-GGSL-GYSSFETSSLISLWSIW 286 (453)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~s~~~~~~~~~~~~i~ 286 (453)
+++ +++.+...++++++++|.++...+..++..........++|.+ .++. |+++.+++...+...++
T Consensus 239 --~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 307 (438)
T 3o7q_A 239 --HSD---------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVC 307 (438)
T ss_dssp --CCC---------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred --ccc---------ccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHH
Confidence 000 0111223466788999999999998888888777888889999 8776 99999999999999999
Q ss_pred HHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccc
Q 012910 287 NFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQM 366 (453)
Q Consensus 287 ~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~ 366 (453)
..+++++.|+++||+ +|++++..+.++..++.+++...+.....+..++.|++.+..++....+..|.+|++ +
T Consensus 308 ~~~~~~~~g~l~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~ 380 (438)
T 3o7q_A 308 FFIGRFTGTWLISRF------APHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-T 380 (438)
T ss_dssp HHHHHHHHHHHHHHS------CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-H
T ss_pred HHHHHHHHHHHHHHh------cchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-c
Confidence 999999999999999 667777777777777776666444334455567888999988999999989999955 7
Q ss_pred cchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHH
Q 012910 367 GTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCG 424 (453)
Q Consensus 367 g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~ 424 (453)
+.+.++.. ...+|+. ++|.+.|.+.|..|+ |+..|++.+++.++.
T Consensus 381 ~~~~~~~~-~~~~g~~-~~~~~~g~l~~~~g~-----------~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 381 KYGSSFIV-MTIIGGG-IVTPVMGFVSDAAGN-----------IPTAELIPALCFAVI 425 (438)
T ss_dssp HHHHHHHH-HTTHHHH-HHHHHHHHHHHHHTS-----------SGGGGHHHHHHHHHH
T ss_pred cchhhHHH-HHHHHHH-HHHHHHHHHHHHhcc-----------hHHHHHHHHHHHHHH
Confidence 88888777 5567775 799999999999875 677887765544443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.2e-29 Score=244.78 Aligned_cols=363 Identities=10% Similarity=0.005 Sum_probs=237.0
Q ss_pred ccchhHHhh-----cCCCccchhHHHHHHHHhhhh-cchhhhhhhc-cCCCCCCCCcchhhhhhccCchHHHHHHHHHHH
Q 012910 34 IYSPALKTT-----QHYDQTTLDTVSVFKDIGANT-GTLSGVLYTY-STSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCF 106 (453)
Q Consensus 34 ~~~~~~~~~-----~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr-~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~ 106 (453)
...+.++++ +|+|..+.+++.+.+.++..+ ++++|+++|| +| ||+++.++.++.+
T Consensus 35 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g------------------~r~~~~~~~~~~~ 96 (491)
T 4aps_A 35 ILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIG------------------ARPAVFWGGVLIM 96 (491)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------------------chHHHHHHHHHHH
Confidence 333445555 999999999887888777775 5999999999 89 9999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CC--ccchhheecccCCCCc--cc------
Q 012910 107 AGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TY--SGTAVGIMKGSDSDRT--SE------ 175 (453)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~--rg~~~g~~~~~~~~~~--~~------ 175 (453)
++.+++ +++ ++++.+++.|+++|++.+...+...+++.|++| ++ |+.+.++...+.+++. .|
T Consensus 97 ~~~~~~-----~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 169 (491)
T 4aps_A 97 LGHIVL-----ALP--FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAA 169 (491)
T ss_dssp HHHHHH-----HSC--CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHh--hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHH
Confidence 999884 444 589999999999999999999999999999997 67 6677777655443321 11
Q ss_pred ccccccCcccchhhhhhhhhcc--cccCCCCcccCCCCCCCCCCCCcCCc------------------------C-----
Q 012910 176 TSFCEEDELTDDPHEMHAEKMH--VRQDPVGYHRLPSEPDVGTDTNDATT------------------------S----- 224 (453)
Q Consensus 176 ~~~~~w~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~----- 224 (453)
....+|++.|........+... ....++...++..+++++.+.++..+ .
T Consensus 170 ~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 249 (491)
T 4aps_A 170 QEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAY 249 (491)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccc
Confidence 1226899888776333221111 11111111111001110000000000 0
Q ss_pred -------------------CCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhh-cCCChhhhhHHHHHHH
Q 012910 225 -------------------LWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWS 284 (453)
Q Consensus 225 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~ 284 (453)
.++...+..+..+....+..++..++...........++.+.++ .+.+..+.+...+...
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (491)
T 4aps_A 250 INLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNP 329 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHH
T ss_pred hhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccch
Confidence 00000000111112223444444444445555566667777775 4777678889999999
Q ss_pred HHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHh----------cchhHHHHHHHHHHHhhhhhhhhhH
Q 012910 285 IWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS----------GLPGALYAGSILVGVCYGSQWSLMP 354 (453)
Q Consensus 285 i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~----------~~~~~~~~~~~l~g~~~g~~~~~~~ 354 (453)
+...++.++.|++.||+++|+. .+...+..+.++..++++++.. .+.+...+..++.|++.+...+...
T Consensus 330 ~~~~~~~~~~~~l~~r~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 408 (491)
T 4aps_A 330 LFIMLYTPFFAWLWTAWKKNQP-SSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGL 408 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTTC----CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999976532 1233344556666666555432 1344566677888999888889999
Q ss_pred HHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 012910 355 TIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLR 434 (453)
Q Consensus 355 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~ 434 (453)
.++.|.+|+++++++.|+.+....+|.. ++|.+.+.+.|.. +...|...+++.+++.++.+...++
T Consensus 409 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~-i~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 409 SVTTKLAPKAFNSQMMSMWFLSSSVGSA-LNAQLVTLYNAKS-------------EVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp HHHHHHTTTTCSSSSTHHHHHHHHHHHH-HHHHHGGGGGGSS-------------TTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccc-------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999996 6888888877652 5677888887777777666655544
Q ss_pred hh
Q 012910 435 TK 436 (453)
Q Consensus 435 ~~ 436 (453)
.+
T Consensus 475 ~~ 476 (491)
T 4aps_A 475 IQ 476 (491)
T ss_dssp --
T ss_pred HH
Confidence 43
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-28 Score=243.01 Aligned_cols=402 Identities=14% Similarity=0.005 Sum_probs=245.3
Q ss_pred HHHHHHHHHHHHhhcC-cccccccchhHHhhcCC--------CccchhHHHHHHHHhhhhc-chhhhhhhccCCCCCCCC
Q 012910 13 WVSTVASIWIQCTSGS-LYTFSIYSPALKTTQHY--------DQTTLDTVSVFKDIGANTG-TLSGVLYTYSTSDHSSHH 82 (453)
Q Consensus 13 ~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~--------s~~~~~~i~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~ 82 (453)
|.+.+.+.+..+..|. ...++...|.++++++. +..+.+++.+.+.+|..++ +++|+++||+|
T Consensus 11 ~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~G------- 83 (491)
T 4gc0_A 11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFG------- 83 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTC-------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 3344444444555555 34456677888887743 2345567778888888875 89999999999
Q ss_pred cchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCC-----------CCCCHHHHHHHHHHHHhhhhhHhhhhhHhHh
Q 012910 83 PRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLI-----------PRPPVPVMCLFMLFAAHGMTFFNTADVVTSV 151 (453)
Q Consensus 83 p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~ 151 (453)
||+++.++.+++.++.++++++..+.. ..++++.++++|+++|+|.|...+.+..++.
T Consensus 84 -----------Rk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~ 152 (491)
T 4gc0_A 84 -----------RRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIA 152 (491)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------CHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999654211100 0158999999999999999999999999999
Q ss_pred hhcC-CCccchhheecccCCCCcc-------------cc---cccccCcccchhhhhhhhhcc-cccCCCCc---ccCCC
Q 012910 152 RNFP-TYSGTAVGIMKGSDSDRTS-------------ET---SFCEEDELTDDPHEMHAEKMH-VRQDPVGY---HRLPS 210 (453)
Q Consensus 152 ~~~p-~~rg~~~g~~~~~~~~~~~-------------~~---~~~~w~~~~~~~~~~~~~~~~-l~~~~~~~---~~~~~ 210 (453)
|+.| ++|++..++...+...+.. .. ....||..+............ ....|+.. ..+..
T Consensus 153 E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~ 232 (491)
T 4gc0_A 153 ELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGK 232 (491)
T ss_dssp TTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTC
T ss_pred hhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCc
Confidence 9997 8999998887655433110 00 112344333332222111111 12222211 11110
Q ss_pred CCCCCCC-------CC--cC---C---cCCCCCCccHHHHhhhhHHHHHHHHHHh-hhcchhhecccHHHhhhhcCCChh
Q 012910 211 EPDVGTD-------TN--DA---T---TSLWGGDLDLLQAICTLEFWILSFAMAC-GMGSGLATVNNISQIGGSLGYSSF 274 (453)
Q Consensus 211 ~~~~~~~-------~~--~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~s~~ 274 (453)
+++.+.. .. ++ . ..+..+.......++.+..........+ .......+..+.+.+.++.+.+..
T Consensus 233 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (491)
T 4gc0_A 233 QEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTD 312 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHH
T ss_pred hhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCcc
Confidence 0000000 00 00 0 0000000111122233333333333333 333334455566777778888888
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH----hcch-hHHHHHHHHHHHhhh-h
Q 012910 275 ETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA----SGLP-GALYAGSILVGVCYG-S 348 (453)
Q Consensus 275 ~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~----~~~~-~~~~~~~~l~g~~~g-~ 348 (453)
+......+.++...++.++.+++.||+ +||+.+..+.....++.+.+. .... ....+...+...+++ .
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~l~dr~------Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (491)
T 4gc0_A 313 IALLQTIIVGVINLTFTVLAIMTVDKF------GRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS 386 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------CSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhh------cCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhH
Confidence 888888889999999999999999999 667777777666666655543 1122 222222222222222 2
Q ss_pred hhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHH
Q 012910 349 QWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAA 428 (453)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~ 428 (453)
..+..+.+.+|.+|++.|+++.|+.+..+.++++ +++.+...+.+..... ....+...|++.+++++++.++.
T Consensus 387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~-i~~~~~p~l~~~~~~~------~~~~~~~~~~i~~~~~~~~~i~~ 459 (491)
T 4gc0_A 387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANY-FVSWTFPMMDKNSWLV------AHFHNGFSYWIYGCMGVLAALFM 459 (491)
T ss_dssp TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHH-HHHTHHHHHCHHHHHH------HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH------hhhhhhHHHHHHHHHHHHHHHHH
Confidence 3456678899999999999999999988888886 5666666555432100 00013567888888888888888
Q ss_pred HHHhhhhhhhhHHHHHH
Q 012910 429 FGLFLRTKRFYNEVILR 445 (453)
Q Consensus 429 ~~~~~~~~~~~~~~~~~ 445 (453)
+++.+|+|.+..|+.++
T Consensus 460 ~~~~PETkg~tLeei~~ 476 (491)
T 4gc0_A 460 WKFVPETKGKTLEELEA 476 (491)
T ss_dssp HHHCCCCTTCCHHHHGG
T ss_pred HheecCCCCCCHHHHHH
Confidence 88888888877776654
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.4e-29 Score=235.54 Aligned_cols=320 Identities=13% Similarity=-0.001 Sum_probs=241.3
Q ss_pred cccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHH
Q 012910 29 LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFA 107 (453)
Q Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~ 107 (453)
...+.+..|.+.+++|.|..+.+++.+...++... +++.|++.||+| ||+++.++.++.++
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g------------------~r~~~~~~~~~~~~ 77 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVG------------------RRPVILVGMSIFML 77 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSC------------------CCCCCHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------------CchhHHHHHHHHHH
Confidence 45566778899999999999999887777777765 599999999999 99999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCc--------ccccc
Q 012910 108 GYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRT--------SETSF 178 (453)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~--------~~~~~ 178 (453)
+.++++++ ++++.+++.|+++|++.+...+...+++.|++| ++|++++++...+.+++. .....
T Consensus 78 ~~~~~~~~-------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 150 (375)
T 2gfp_A 78 ATLVAVTT-------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM 150 (375)
T ss_dssp HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHh-------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 99987665 589999999999999999999999999999996 899999999876655421 11122
Q ss_pred cccCcccchhhhhhhhhcc--cccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchh
Q 012910 179 CEEDELTDDPHEMHAEKMH--VRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGL 256 (453)
Q Consensus 179 ~~w~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (453)
.+||+.|........+... ....|+++++ +++ +++...+.++.+|+|+++...+..++......
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (375)
T 2gfp_A 151 WNWRACYLFLLVLCAGVTFSMARWMPETRPV----DAP----------RTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIA 216 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT----TCC----------CCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHCcccCCC----Ccc----------cccHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Confidence 5788888765444332222 1122211111 000 00122345788899999998888888877777
Q ss_pred hecccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHH-HHHHHH--HHH---h
Q 012910 257 ATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAA-MSIGHL--IIA---S 329 (453)
Q Consensus 257 ~~~~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~-~~i~~~--~~~---~ 329 (453)
.+..+.|.+.++ .|.++.+++...+...++..+++++.+++.||. +++. ..+... ...+.. ... .
T Consensus 217 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~------~~~~--~~~~~~~~~~~~~~~~~~~~~~ 288 (375)
T 2gfp_A 217 AFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF------STLM--WQSVICCLLAGLLMWIPDWFGV 288 (375)
T ss_dssp HHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH------HHHH--HHHHHHHHHTSSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH--HHHHHHHHHHHHHHHHHhhhcc
Confidence 777888888876 799999999999999999999999999999999 4422 222222 222221 111 1
Q ss_pred cchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccC
Q 012910 330 GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREA 397 (453)
Q Consensus 330 ~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g 397 (453)
++.+...+..++.|++.+...+....++.|.+| ++++++.|+.+....+|.. ++|.+.|.+.+..+
T Consensus 289 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~-~~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 289 MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSG-VLASLSAMLPQTGQ 354 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHH-CCSTTCTHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHH-HHHHHHHHHhcCCc
Confidence 233445566778899999999999999999998 8999999999999999996 68888999887654
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=215.24 Aligned_cols=356 Identities=10% Similarity=-0.056 Sum_probs=219.8
Q ss_pred cccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHH
Q 012910 33 SIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFL 111 (453)
Q Consensus 33 ~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~ 111 (453)
+.....+++++|+|..+.+++.+...++... ++++|+++||+| ||++++++..+++++...
T Consensus 28 ~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~G------------------rr~~l~~~~~~~~~~~~~ 89 (417)
T 2cfq_A 28 PFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLG------------------LRKYLLWIITGMLVMFAP 89 (417)
T ss_dssp TTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTST------------------TCCHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------------chHHHHHHHHHHHHHHHH
Confidence 3343446778999999999877777777765 599999999999 999999888877653321
Q ss_pred HHHHHhcCCCCCCH-HHHHHHHHHHHhhhhhHhhhhhHhHhhhcC---CCccchhheecccCCCCc--ccc-----cccc
Q 012910 112 MWASVVGLIPRPPV-PVMCLFMLFAAHGMTFFNTADVVTSVRNFP---TYSGTAVGIMKGSDSDRT--SET-----SFCE 180 (453)
Q Consensus 112 ~~~~~~~~~~~~~~-~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p---~~rg~~~g~~~~~~~~~~--~~~-----~~~~ 180 (453)
+.. ..+. +.. ..++..+++.|++.+..++.....+.++.+ ++++.+.|.......++. .|. ...+
T Consensus 90 ~~~--~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~ 165 (417)
T 2cfq_A 90 FFI--FIFG--PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTIN 165 (417)
T ss_dssp HHH--HTHH--HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHC
T ss_pred HHH--HHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 110 0000 000 012345666666666655555555555543 456766666654444421 111 1246
Q ss_pred cCcccchhhhhhhhhccc-ccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhec
Q 012910 181 EDELTDDPHEMHAEKMHV-RQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATV 259 (453)
Q Consensus 181 w~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (453)
|+..|............. ...+++.+++. ++++.++ + ++++....+.++.+++|+++...+..+........+.
T Consensus 166 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (417)
T 2cfq_A 166 NQFVFWLGSGCALILAVLLFFAKTDAPSSA--TVANAVG--A-NHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFD 240 (417)
T ss_dssp SHHHHTTTTTTTTTHHHHSCSSCCCCSCSS--CSSSSSS--S-CCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCccccccc--ccccccc--c-ccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHH
Confidence 777776543332221111 11111110000 0000000 0 0011111245678899998877665544443333444
Q ss_pred ccHHHhhhhc-C---CChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhH
Q 012910 260 NNISQIGGSL-G---YSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGA 334 (453)
Q Consensus 260 ~~~~~~~~~~-g---~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~ 334 (453)
.++|.++++. + .+....+...++..++..++.++.|+++||+ +|++++..+..+.+++.+++. .++.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~------g~~~~l~~~~~~~~~~~~~~~~~~~~~~ 314 (417)
T 2cfq_A 241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI------GGKNALLLAGTIMSVRIIGSSFATSALE 314 (417)
T ss_dssp HHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CHHHHHHHHHHHHHHHHHHHTTCCSHHH
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh------cHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 5577776543 2 2344557777888889999999999999999 666677777777766665555 334444
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhh-hhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHH
Q 012910 335 LYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTI-TIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLS 413 (453)
Q Consensus 335 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 413 (453)
+.+...+.+++.+...+....++.|.+|++.++++.|.. +....+|+. ++|.+.|.+.|..+ |...
T Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~-~gp~l~G~l~~~~g------------~~~~ 381 (417)
T 2cfq_A 315 VVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI-FMSVLAGNMYESIG------------FQGA 381 (417)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHH-HHTHHHHTHHHHSH------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHH-HhhhhHHHHHHhcC------------cHHH
Confidence 455555667766666666778999999999999999995 788889985 69999999998766 7888
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 012910 414 FFIMGSATLCGSLAAFGLFLR 434 (453)
Q Consensus 414 f~~~~~~~~~~~i~~~~~~~~ 434 (453)
|.+.+++.+++.++.+...++
T Consensus 382 f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 382 YLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHHHHhhhcC
Confidence 988888888877655544433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-24 Score=215.75 Aligned_cols=375 Identities=11% Similarity=-0.064 Sum_probs=209.3
Q ss_pred ccchhHHhhcC------CCccchhHHHHHHHHhhhh-cchhhhhhhcc-CCCCCCCCcchhhhhhccCchHHHHHHHHHH
Q 012910 34 IYSPALKTTQH------YDQTTLDTVSVFKDIGANT-GTLSGVLYTYS-TSDHSSHHPRQQRLTRLLGPWVVLLVGAIQC 105 (453)
Q Consensus 34 ~~~~~~~~~~~------~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~-g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~ 105 (453)
.+.+.+++++| +|..+.+++.+.+.++..+ .+++|+++||+ | ||+++.++.++.
T Consensus 34 ~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g------------------~r~~~~~~~~~~ 95 (524)
T 2xut_A 34 ILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFG------------------KYNTILWLSLIY 95 (524)
T ss_dssp HHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSC------------------SHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------------chHHHHHHHHHH
Confidence 34455788899 9999999887777777775 59999999999 9 999999999999
Q ss_pred HHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhhe---ecccCCCC----c---
Q 012910 106 FAGYFLMWASVVGLIPRP-PVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGI---MKGSDSDR----T--- 173 (453)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~---~~~~~~~~----~--- 173 (453)
+++.++++++ + +++.+++.|+++|++.+...+...+++.|++| ++|+++.+. .....+++ .
T Consensus 96 ~~~~~~~~~~-------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~ 168 (524)
T 2xut_A 96 CVGHAFLAIF-------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSM 168 (524)
T ss_dssp HHHHHHHHHT-------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHh-------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999886554 5 89999999999999999999999999999997 788876665 43333221 1
Q ss_pred -ccccccccCcccchhhhhhhhhcc--cccCCCCcccCCCCCC-CCCCCC-cC-CcCCCCC-C-----------------
Q 012910 174 -SETSFCEEDELTDDPHEMHAEKMH--VRQDPVGYHRLPSEPD-VGTDTN-DA-TTSLWGG-D----------------- 229 (453)
Q Consensus 174 -~~~~~~~w~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~-~~~~~~-~~-~~~~~~~-~----------------- 229 (453)
......+|++.|........+... ....++...+++++++ .+..+. .. .+++..+ +
T Consensus 169 ~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (524)
T 2xut_A 169 PLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYA 248 (524)
T ss_dssp THHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhh
Confidence 111226788888765443222111 1111111100000000 000000 00 0000000 0
Q ss_pred --------------------------ccH--H----------HHhhhhHHHHHHHHHHh---hhcchhhecccHHHhhhh
Q 012910 230 --------------------------LDL--L----------QAICTLEFWILSFAMAC---GMGSGLATVNNISQIGGS 268 (453)
Q Consensus 230 --------------------------~~~--~----------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 268 (453)
.++ . +..+.++.+........ ...........++.+..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (524)
T 2xut_A 249 LVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQAND 328 (524)
T ss_dssp GGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHH
T ss_pred hcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHh
Confidence 000 0 00011111111111111 111111111222223233
Q ss_pred cCCCh-hhhhHHHHHHHHHHHHHhhhhhhhh-hhhhhcc-ccCchhHHHHHHHHHHHHHHHHHh----------cchhHH
Q 012910 269 LGYSS-FETSSLISLWSIWNFLGRFGAGYVS-DYFLHVK-EWARPLFMVITLAAMSIGHLIIAS----------GLPGAL 335 (453)
Q Consensus 269 ~g~s~-~~~~~~~~~~~i~~~ig~~~~G~l~-Dr~~~~~-~~~r~~~~~~~~~~~~i~~~~~~~----------~~~~~~ 335 (453)
.+.+. ...+.......++..++.++.+++. |+..++. +.+++..+..+.++.+++++++.. .+.+.+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (524)
T 2xut_A 329 MVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQ 408 (524)
T ss_dssp SCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHH
T ss_pred cCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHH
Confidence 33221 1345555555566666777777664 3222221 012334555666666666665542 133455
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHH
Q 012910 336 YAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFF 415 (453)
Q Consensus 336 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~ 415 (453)
.+..++.|++.+...+....++.|.+|++++|++.|+.++...+|+. ++|.+.|.+.+..+...... .........|+
T Consensus 409 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~-~g~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~ 486 (524)
T 2xut_A 409 ILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNL-WVLLANVSVKSPTVTEQIVQ-TGMSVTAFQMF 486 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHH-HHHHHHHHTTSCHHHHHHHH-HHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHH-HHHHHHHHhccccccccccc-ccccccccHHH
Confidence 66778889999999999999999999999999999999999999996 69999999887532000000 00000123366
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 012910 416 IMGSATLCGSLAAFGLFLRT 435 (453)
Q Consensus 416 ~~~~~~~~~~i~~~~~~~~~ 435 (453)
+.+++.+++.++.++..++.
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~ 506 (524)
T 2xut_A 487 FFAGFAILAAIVFALYARSY 506 (524)
T ss_dssp HHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 67777776665555444433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-14 Score=140.19 Aligned_cols=178 Identities=15% Similarity=0.071 Sum_probs=146.0
Q ss_pred hhhHHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHH
Q 012910 237 CTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVIT 316 (453)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~ 316 (453)
+.+.++..++..++.......+...+|.+.+++ .+..+.+++.+...++..++.++.|+++||+ +||+++..+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~------g~r~~l~~~ 98 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS------NPRVFLPAG 98 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc------CchHHHHHH
Confidence 344555566666666555555666788888899 9999999999999999999999999999999 777888888
Q ss_pred HHHHHHHHHHHHh-----cchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhh
Q 012910 317 LAAMSIGHLIIAS-----GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGY 391 (453)
Q Consensus 317 ~~~~~i~~~~~~~-----~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~ 391 (453)
.++.+++.++... ++.+.+++..++.|++.+...+...+++.|.+|+++|+++.|+.+....+|.. ++|.+.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~ 177 (451)
T 1pw4_A 99 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG-IPPLLFLL 177 (451)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHT-SHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 8888888777653 45567778889999999999999999999999999999999999999999995 79988888
Q ss_pred heeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 012910 392 IYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFL 433 (453)
Q Consensus 392 l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 433 (453)
+.+..++ |+..|++.+++.++..++.++..+
T Consensus 178 l~~~~g~-----------w~~~f~~~~~~~~~~~~~~~~~~~ 208 (451)
T 1pw4_A 178 GMAWFND-----------WHAALYMPAFCAILVALFAFAMMR 208 (451)
T ss_dssp HHHHTCC-----------STTCTHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhcc-----------HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 8876654 789999988887776655544443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-14 Score=140.93 Aligned_cols=176 Identities=14% Similarity=0.143 Sum_probs=146.4
Q ss_pred hHHHHHHHHHHhhhcchhhecccHHHhhhh------cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhh-hhhccccCchh
Q 012910 239 LEFWILSFAMACGMGSGLATVNNISQIGGS------LGYSSFETSSLISLWSIWNFLGRFGAGYVSDY-FLHVKEWARPL 311 (453)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr-~~~~~~~~r~~ 311 (453)
+.++.+++..++.....+....+++.++++ +|.+..+.++..+...++..+++++.|+++|| + +||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~------g~r~ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII------GARP 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------CHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cchH
Confidence 356666666666666666666777777764 79999999999999999999999999999999 8 7788
Q ss_pred HHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhcccc--ccchhhhhhhhhhhhhhhhhhhh
Q 012910 312 FMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQ--MGTIFNTITIANPVGSYIFSVRV 388 (453)
Q Consensus 312 ~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~g~~i~g~~~ 388 (453)
++..+.++..++.++.. .++.+.+.+..++.|++.+...+...+++.|.+|+++ |+.+.++.+....+|.. ++|.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~ 165 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAF-IAPLI 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHH-HHHHH
Confidence 88888888888888777 4566677888899999999999999999999999988 67788888899999995 79999
Q ss_pred hhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 012910 389 VGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFL 433 (453)
Q Consensus 389 ~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 433 (453)
.+.+.+..+ |+..|++.++..+++.++.++..+
T Consensus 166 ~~~l~~~~g------------~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 166 VGAAQEAAG------------YHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HHHHHHHSC------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhh------------HHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999998776 899999988877777665554433
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=9e-14 Score=134.21 Aligned_cols=182 Identities=10% Similarity=0.023 Sum_probs=138.4
Q ss_pred HHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHH
Q 012910 242 WILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMS 321 (453)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~ 321 (453)
..+.+..++...........+|.+.+++|.+..+.+++.+...++..++.++.|+++||+ +||+++..+.++..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~------g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 29 ALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL------SYKAGIITGLFLYA 102 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh------cchHHHHHHHHHHH
Confidence 334444444444444555567888889999999999999999999999999999999999 78888888888888
Q ss_pred HHHHHH---H-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhhe-ecc
Q 012910 322 IGHLII---A-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIY-DRE 396 (453)
Q Consensus 322 i~~~~~---~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~-~~~ 396 (453)
++.++. . .++.+.+++..++.|++.+...+....++.|.+|+++|+.+.++.+....+|.. ++|.+.+.+. +..
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~~~~~ 181 (438)
T 3o7q_A 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAI-IAVVFGQSLILSNV 181 (438)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHH-HHHHHTTHHHHTSS
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccc
Confidence 888776 4 456677788889999999999999999999999999999999999999999996 7998888887 443
Q ss_pred CCCCCCc-------------cccccchHHHHHHHHHHHHHHHHHHHH
Q 012910 397 ASGEGNK-------------CTGTHCFMLSFFIMGSATLCGSLAAFG 430 (453)
Q Consensus 397 g~~~~~~-------------~~~~~~~~~~f~~~~~~~~~~~i~~~~ 430 (453)
+...+.. ....++|++.|++.+++.++..++.+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2100000 000011678887777666665544433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-13 Score=130.16 Aligned_cols=164 Identities=12% Similarity=0.154 Sum_probs=136.3
Q ss_pred HHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHH
Q 012910 244 LSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIG 323 (453)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~ 323 (453)
+++..++.......+...+|.+.+++|.|+.+.++..+...++..++.++.|+++||+ +||+++..+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~------g~r~~~~~~~~~~~~~ 78 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV------GRRPVILVGMSIFMLA 78 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS------CCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCchhHHHHHHHHHHH
Confidence 3444455555555556667888889999999999999999999999999999999999 6666777777777777
Q ss_pred HHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCC
Q 012910 324 HLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGN 402 (453)
Q Consensus 324 ~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~ 402 (453)
.++.. .++.+.+.+..++.|++.+...+....++.|.+|+++|+++.+..+....+|.. ++|.+.+.+.+..+
T Consensus 79 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~----- 152 (375)
T 2gfp_A 79 TLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPL-LAPLIGGLLDTMWN----- 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHH-HHHHHHHHSSCHHH-----
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhcc-----
Confidence 77665 455667777888999999999999999999999999999999999999999995 79999999988766
Q ss_pred ccccccchHHHHHHHHHHHHHHHH
Q 012910 403 KCTGTHCFMLSFFIMGSATLCGSL 426 (453)
Q Consensus 403 ~~~~~~~~~~~f~~~~~~~~~~~i 426 (453)
|+..|++.+++.++..+
T Consensus 153 -------~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 153 -------WRACYLFLLVLCAGVTF 169 (375)
T ss_dssp -------HHHHHHHHHHHHHHHHC
T ss_pred -------HHHHHHHHHHHHHHHHH
Confidence 89999888877766654
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-12 Score=128.62 Aligned_cols=172 Identities=14% Similarity=0.145 Sum_probs=138.3
Q ss_pred hHHHHHHHHHHhhhcchhhecccHHHhhh-hcC------CChhhhhHHHHHHHHHHHHHhhhhhhhhhhh-hhccccCch
Q 012910 239 LEFWILSFAMACGMGSGLATVNNISQIGG-SLG------YSSFETSSLISLWSIWNFLGRFGAGYVSDYF-LHVKEWARP 310 (453)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g------~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~-~~~~~~~r~ 310 (453)
+.+|.+.+..++.....+....+++.+++ ++| +++.+.++..+...++..++.++.|+++||+ + ||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g------~r 85 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFG------KY 85 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSC------SH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ch
Confidence 45666666777766666667777787765 578 9999999999999999999999999999999 6 44
Q ss_pred hHHHHHHHHHHHHHHHHH-hc-chhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhh---hhhhhhhhhhhhh
Q 012910 311 LFMVITLAAMSIGHLIIA-SG-LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNT---ITIANPVGSYIFS 385 (453)
Q Consensus 311 ~~~~~~~~~~~i~~~~~~-~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~---~~~~~~~g~~i~g 385 (453)
+++..+.++..++.++.. .+ +.+.+++..++.|++.+...+...+++.|.+|+++|+++.+. .+....+|.. ++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~-~g 164 (524)
T 2xut_A 86 NTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSF-FA 164 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHH-HH
Confidence 566677777777776665 44 666777888899999999999999999999999999876666 7888899985 79
Q ss_pred hhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHH
Q 012910 386 VRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAF 429 (453)
Q Consensus 386 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~ 429 (453)
|.+.+.+.+..+ |+..|++.+++.+++.++.+
T Consensus 165 ~~~~~~l~~~~g------------~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 165 SLSMPLLLKNFG------------AAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHTSTHHHHTSC------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccc------------HHHHHHHHHHHHHHHHHHHH
Confidence 989999988766 89999988887776665443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.3e-10 Score=112.06 Aligned_cols=115 Identities=19% Similarity=0.120 Sum_probs=95.7
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-------------------hcchh
Q 012910 273 SFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-------------------SGLPG 333 (453)
Q Consensus 273 ~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-------------------~~~~~ 333 (453)
..+.+++.+.+.++..+|.+++|+++||+ |||+++.++.++..++.++.+ .++.+
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~------GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~ 127 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF------GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVP 127 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT------CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHH
Confidence 34567788889999999999999999999 788899999888888877654 23556
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhhee
Q 012910 334 ALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYD 394 (453)
Q Consensus 334 ~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~ 394 (453)
.+++..++.|++.|...+..+.++.|..|+++|+...++.+.+..+|.. .++.+.....+
T Consensus 128 ~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~-~~~~~~~~~~~ 187 (491)
T 4gc0_A 128 EFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQL-LVYCVNYFIAR 187 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhh-hhhhcchhhcc
Confidence 7888899999999999999999999999999999999999988888875 45544444433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=8.5e-11 Score=112.61 Aligned_cols=170 Identities=15% Similarity=0.144 Sum_probs=111.3
Q ss_pred HhhhhHHHHHHHHHHhhhcchhhecccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHH
Q 012910 235 AICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFM 313 (453)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~ 313 (453)
.+|+|++|.+....++..........++|.++++ .|+|+.+.+.+.+...++..++++++|+++||+ +||+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~------Grr~~l 76 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL------GLRKYL 76 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS------TTCCHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cchHHH
Confidence 5788999988887777766666677788988865 799999999999999999999999999999999 556666
Q ss_pred HHHHHHHHHH---HHHHHhcc-h-hHHHHHHHHHHHhhhhhhhhhHHHHhHhhcc--ccccchhhhhhhhhhhhhhhhhh
Q 012910 314 VITLAAMSIG---HLIIASGL-P-GALYAGSILVGVCYGSQWSLMPTIASEIFGV--LQMGTIFNTITIANPVGSYIFSV 386 (453)
Q Consensus 314 ~~~~~~~~i~---~~~~~~~~-~-~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~i~g~ 386 (453)
..+..+..+. ........ . ........+.+.+.+...+.....+.+..++ ++++..+|..+....+|.. ++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~-~~~ 155 (417)
T 2cfq_A 77 LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWA-LGA 155 (417)
T ss_dssp HHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHH-HHH
Confidence 6655544331 11111100 0 0011122222333333333333333333332 4567778888888888885 688
Q ss_pred hhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHH
Q 012910 387 RVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCG 424 (453)
Q Consensus 387 ~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~ 424 (453)
.+.+.+.+. + |+..|++.++..++.
T Consensus 156 ~l~~~l~~~-~------------~~~~f~~~~~~~~~~ 180 (417)
T 2cfq_A 156 SIVGIMFTI-N------------NQFVFWLGSGCALIL 180 (417)
T ss_dssp HHHHHHHHH-C------------SHHHHTTTTTTTTTH
T ss_pred HHHHHHHHh-c------------hhHHHHHHHHHHHHH
Confidence 888988774 3 688887766554433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 453 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.92 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.52 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.18 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.9e-35 Score=283.74 Aligned_cols=390 Identities=15% Similarity=0.091 Sum_probs=277.9
Q ss_pred hhccccHHHHHHHHHHHHhhcC-cccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcc
Q 012910 7 LRLNTRWVSTVASIWIQCTSGS-LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPR 84 (453)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~ 84 (453)
..++.||.+++.+++....... ...++...|.++ |+|+|.+|++++.+.+.++..+ ++++|+++||+|
T Consensus 18 ~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g--------- 87 (447)
T d1pw4a_ 18 TYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSN--------- 87 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSC---------
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---------
Confidence 3345678887777666555433 466777778776 5899999999988888888775 599999999999
Q ss_pred hhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhh
Q 012910 85 QQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVG 163 (453)
Q Consensus 85 ~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g 163 (453)
||+++.++.++.+++.++++++ .... ++++.+++.|++.|++.+..++....++.|++| ++|+++++
T Consensus 88 ---------~r~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 155 (447)
T d1pw4a_ 88 ---------PRVFLPAGLILAAAVMLFMGFV-PWAT--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVS 155 (447)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHC-HHHH--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHH
T ss_pred ---------chHHHHHHHHHHHHHHhhcccc-chhh--hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhccccccc
Confidence 9999999999999999886654 1112 377889999999999999999999999999997 78999999
Q ss_pred eecccCCCCc--ccc-------cccccCcccchhhhhhhhhcc-----cccCCCCcccCCCCCCCCCCCCc--C--CcCC
Q 012910 164 IMKGSDSDRT--SET-------SFCEEDELTDDPHEMHAEKMH-----VRQDPVGYHRLPSEPDVGTDTND--A--TTSL 225 (453)
Q Consensus 164 ~~~~~~~~~~--~~~-------~~~~w~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~~~~~~~~~~--~--~~~~ 225 (453)
+...+.+++. .+. ...+|++.|........+... ++.+|++......++.++...++ + +++.
T Consensus 156 ~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (447)
T d1pw4a_ 156 VWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQEL 235 (447)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------
T ss_pred ccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhcccccc
Confidence 9876654421 111 125789888776443332211 23333322221111111111110 0 0111
Q ss_pred CCCCccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhc
Q 012910 226 WGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHV 304 (453)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~ 304 (453)
...+...++.++++.++......++..........+.+.++++ .+.+..+.+....+..+...+++++.|+++||++++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 315 (447)
T d1pw4a_ 236 TAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRG 315 (447)
T ss_dssp CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred chhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccc
Confidence 1122335567888999998888888888878888888888875 599999999999999999999999999999999755
Q ss_pred cccCchhHHHHHHHHHHHHHHHHH---hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhh
Q 012910 305 KEWARPLFMVITLAAMSIGHLIIA---SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGS 381 (453)
Q Consensus 305 ~~~~r~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 381 (453)
.+.........+..++..... ..+.+...+..++.|++.+...+....++.|.+|++.++++.|+.+....+++
T Consensus 316 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g 392 (447)
T d1pw4a_ 316 ---NRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGG 392 (447)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHH
T ss_pred ---ccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 223333333333333333332 23344555666777888888888888999999999999999999998887766
Q ss_pred hhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 012910 382 YIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFL 433 (453)
Q Consensus 382 ~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 433 (453)
.+.+|.+.|.+.|..| |+..|++.+++.+++.++...+..
T Consensus 393 ~~~~~~~~g~~~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 393 SVAASAIVGYTVDFFG------------WDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp HHHHHHHHHHHHHSSC------------SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC------------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678989999999987 688888888877777766555543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=7.1e-26 Score=214.34 Aligned_cols=380 Identities=10% Similarity=-0.035 Sum_probs=232.2
Q ss_pred hhccccHHHHHHHHHHHHhhcCcccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcch
Q 012910 7 LRLNTRWVSTVASIWIQCTSGSLYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQ 85 (453)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~ 85 (453)
.++++.|...+..++..+..+.. .+.+...+++++|+|.+|+|++.+...++..+ ++++|+++||+|
T Consensus 4 lkn~~~~~l~~~~f~~~~~~~~~--~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~g---------- 71 (417)
T d1pv7a_ 4 LKNTNFWMFGLFFFFYFFIMGAY--FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLG---------- 71 (417)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT----------
T ss_pred ccCchHHHHHHHHHHHHHHHHHH--HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------
Confidence 33445565544444444433322 22232347888999999999888888777765 699999999999
Q ss_pred hhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHH----HHHHHHHHHHhhhhhHhhhhhHhHhhhc-C--CCc
Q 012910 86 QRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVP----VMCLFMLFAAHGMTFFNTADVVTSVRNF-P--TYS 158 (453)
Q Consensus 86 g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~r~l~G~g~~~~~~~~~~~~~~~~-p--~~r 158 (453)
||++++++..+..++..++.+. .+.. ..+..+.+.+.+.+...........+.. + +++
T Consensus 72 --------rr~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (417)
T d1pv7a_ 72 --------LRKYLLWIITGMLVMFAPFFIF-------IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRS 136 (417)
T ss_dssp --------TCTHHHHHHHHHHHTHHHHHHH-------THHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHH
T ss_pred --------chHHHHHHHHHHHHHHHHHHHh-------hhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhh
Confidence 9999999988888888776554 2222 2335555666555555544444444333 2 233
Q ss_pred cchhheecccCCCC--ccc-----ccccccCcccchhhhhhhhhcc--cccCCCCcccCCCCCCCCCCCCcCCcCCCCCC
Q 012910 159 GTAVGIMKGSDSDR--TSE-----TSFCEEDELTDDPHEMHAEKMH--VRQDPVGYHRLPSEPDVGTDTNDATTSLWGGD 229 (453)
Q Consensus 159 g~~~g~~~~~~~~~--~~~-----~~~~~w~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (453)
....+......+.. ..+ ....+|+..+............ ....++....++.++++ +.+++....
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 210 (417)
T d1pv7a_ 137 NFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAV------GANHSAFSL 210 (417)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHH------HSCCCCCCH
T ss_pred HHHHHHHhhhhccccccccccccccccccccccccchhhHHHHHHHHHHHHhcccccchhhhhhh------hhhcccccc
Confidence 44444333222221 111 1113444443333222211111 11111111111000000 001111112
Q ss_pred ccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhh----hhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhcc
Q 012910 230 LDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIG----GSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVK 305 (453)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~ 305 (453)
....+..+++..+....................+.+. ++.+.+....+.......++..++..+.+++.||.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~---- 286 (417)
T d1pv7a_ 211 KLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI---- 286 (417)
T ss_dssp HHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH----
T ss_pred cccccccccccccchhhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhccc----
Confidence 2233444454444444433333333222222222222 23355666777888888999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhh-hhhhhhhhhh
Q 012910 306 EWARPLFMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTI-TIANPVGSYI 383 (453)
Q Consensus 306 ~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~i 383 (453)
++++.+..+..+..++.+.+. .++.+...+..++.|++.+...+....++.|.+|++.++++.|+. ++...+|..
T Consensus 287 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~- 363 (417)
T d1pv7a_ 287 --GGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI- 363 (417)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHH-
T ss_pred --ccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHH-
Confidence 777788888888888777766 456666777778889999999999999999999999999999985 466778885
Q ss_pred hhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 012910 384 FSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLRTKRF 438 (453)
Q Consensus 384 ~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~ 438 (453)
++|++.|.+.|+.| ++.+|++.+++.++..++..+..+++++.
T Consensus 364 i~~~~~G~l~~~~g------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (417)
T d1pv7a_ 364 FMSVLAGNMYESIG------------FQGAYLVLGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp HHHHHHHHHHHHHC------------HHHHHHHHHHHHHHHHHHHHHHSCCSSCT
T ss_pred HHHHHHHHHHHHHC------------HHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 68999999999988 79999999888888877776666555443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=2.3e-14 Score=136.27 Aligned_cols=152 Identities=16% Similarity=0.122 Sum_probs=127.3
Q ss_pred HHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHh-----cchhHHHH
Q 012910 263 SQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS-----GLPGALYA 337 (453)
Q Consensus 263 ~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~ 337 (453)
.++.++.|+|.++.+++.+.+.++..++.++.|+++||+ +||+++..+.++..++.++... .+...+.+
T Consensus 48 ~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~------g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (447)
T d1pw4a_ 48 MPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS------NPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFV 121 (447)
T ss_dssp HHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS------CHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHH
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CchHHHHHHHHHHHHHHhhccccchhhhhHHHHHH
Confidence 345567899999999999999999999999999999999 7888888888888877776542 34556778
Q ss_pred HHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHH
Q 012910 338 GSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIM 417 (453)
Q Consensus 338 ~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~ 417 (453)
..++.|++.+...+....++.|.+|+++|+++.|+.+.+..+|.. ++|.+.+.+.+..++ |+..|++.
T Consensus 122 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-i~~~~~~~~~~~~~~-----------w~~~~~~~ 189 (447)
T d1pw4a_ 122 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG-IPPLLFLLGMAWFND-----------WHAALYMP 189 (447)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHT-SHHHHHHHHHHHTCC-----------STTCTHHH
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhh-hhhhhhhhHhhhhhc-----------ccccchhh
Confidence 888999999999999999999999999999999999999999985 688778877776655 88888888
Q ss_pred HHHHHHHHHHHHHHh
Q 012910 418 GSATLCGSLAAFGLF 432 (453)
Q Consensus 418 ~~~~~~~~i~~~~~~ 432 (453)
+.+.++..++.+...
T Consensus 190 ~~~~~~~~~~~~~~~ 204 (447)
T d1pw4a_ 190 AFCAILVALFAFAMM 204 (447)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHhc
Confidence 877777665555544
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=3.5e-11 Score=111.96 Aligned_cols=178 Identities=13% Similarity=0.109 Sum_probs=114.2
Q ss_pred HHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhH
Q 012910 234 QAICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLF 312 (453)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~ 312 (453)
+.+|||++|.+.+..++...........+|.++++ .|.|+.+.+++.+...++..+++++.|+++||+ +||++
T Consensus 2 ~~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~------grr~~ 75 (417)
T d1pv7a_ 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL------GLRKY 75 (417)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH------TTCTH
T ss_pred CcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CchHH
Confidence 35799999999999888877776677778887764 799999999999999999999999999999999 66666
Q ss_pred HHHHHHHHHHHHHHHH-hcchhH----HHHHHHHHHHhhhhhhhhhHHHHhHhhcc--ccccchhhhhhhhhhhhhhhhh
Q 012910 313 MVITLAAMSIGHLIIA-SGLPGA----LYAGSILVGVCYGSQWSLMPTIASEIFGV--LQMGTIFNTITIANPVGSYIFS 385 (453)
Q Consensus 313 ~~~~~~~~~i~~~~~~-~~~~~~----~~~~~~l~g~~~g~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~i~g 385 (453)
+..+..+..++..+.. ...... ..+...+.+...+...........+..++ +++....+........+.. .+
T Consensus 76 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 154 (417)
T d1pv7a_ 76 LLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWA-LG 154 (417)
T ss_dssp HHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccc-cc
Confidence 7666666665555544 222111 12222333333333333333333332222 2344556666666666664 67
Q ss_pred hhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 012910 386 VRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGL 431 (453)
Q Consensus 386 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~ 431 (453)
|.+.+.+.+.. +...+........+..++..+.
T Consensus 155 ~~~~~~l~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 187 (417)
T d1pv7a_ 155 ASIVGIMFTIN-------------NQFVFWLGSGCALILAVLLFFA 187 (417)
T ss_dssp HHHHHHHHHHC-------------HHHHHHHHHHHHHHHHHHHHSS
T ss_pred ccccccccccc-------------ccccccchhhHHHHHHHHHHHH
Confidence 87888877754 3455555554444444444433
|