Citrus Sinensis ID: 012911

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450---
Protein Sequence
MAKKQKRERFQNPQPFLPSNDDDKSVASSKKRSKAAKHHQKQDKMISSGISSKILKEAMIQQKEVLEESEEPNATKSAFVFAEEEQSKRRVEEDEDDIDDFGGFNETQSQFGNYEQEEIDEDDERLLEAFLSKDAGPQVTLADLIIKKIKENDANIASGETRPLPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEKEGDLVSISYPMSVINKTIEEDRFDIPDVPMEED
Secondary Structure (PSIPRED)
cccHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccHHHHHHHHccccccccccccccccccEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHcHHccccccccccHHcccHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHcccccccccccccccccccccccccccccccccccccccEEEccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccccccHcEEccccccHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHEEccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccHHccccccEEEEcccccccccccccccccc
Coil and Loop (DISEMBL)
makkqkrerfqnpqpflpsndddksvasSKKRSKAAKHHQKQDKMISSGISSKILKEAMIQQKEVleeseepnatksAFVFAEEeqskrrveededdiddfggfnetqsqfgnyeqeeidEDDERLLEAFLskdagpqvTLADLIIKKIKendaniasgetrplpkldeSFINLYKGVGEFLSKytagkmpkafkhipstqMWEQVLYltepekwtpnamFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKslykpaafnkgilfplcksgtcnlrEAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFledtrvmpvIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDssrnrgekegdlvsisypmsvinktieedrfdipdvpmeed
Flexible Loop (DISEMBL)
makkqkrerfqnpqpflpsndddksvASSKKRskaakhhqkqdkmissgissKILKEAMIQQKEVleeseepnatksafvfaeeeqskrrveededdiddfggfnetqsqfgnYEQEEIDEDDERLLEAFlskdagpqvtLADLIIKKIkendaniasgetrplpkldESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRillkkqkhklvtpeiireldssrnrgekegdlvsisypmsvinktieedrfdipdvpmeed
Low Complexity Region (SEG)
MAKKQKRERFQNPQPFLPsndddksvasskkrskaakHHQKQDKMISSGISSKILKEAMIQQKEVLEESEEPNATKSAFVFAEEEQSKRRVeededdiddFGGFNETQSQFGNYeqeeideddeRLLEAFLSKDAGPQVTLADLIIKKIKENDANIASGETRPLPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEKEGDLVSISYPMSVINKTIEEDRFDIPDVPMEED
Disordered region (IsUnstruct)
*******************************************************************************************************************************EAFLSKDAGPQVTLADLIIKKIKENDANI********PKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQ****DDLRILLKKQKHKLVTPEI*******************ISYPMSVIN******************
Disordered Region (DISOPRED)
*************************************************ISSKILKEAMIQ***************************************FGGFNETQSQFGNYEQEEIDEDDERLLE***********TLADLII************************FINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEII***********************SVINKTIEEDRFDIPDVPM***
Disordered Region (DISEMBL)
**********QNPQPFLPS**************************ISSGISSKILKEAMIQQ************TKSAFVF***************DIDDFGGFNETQSQFGNYEQEEIDEDDERLLEAFLSKDAGPQVTLADLIIKKIKENDANIASGETRPLPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEKEGDLVSISYPMSVINKTIEEDRFDIPDVPMEED
Disordered Region (DISPRO)
***************************************************SKILKEAMIQQKEVLEE*******************************************GNYEQEEIDEDDERLLEAFLSKDAGPQVTLADLIIKKIKENDANIA****RPLPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRN****EGDLVSISYPMSVINKTIEEDRFDIPDVP****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKKQKRERFQNPQPFLPSNDDDKSVASSKKRSKAAKHHQKQDKMISSGISSKILKEAMIQQKEVLEESEEPNATKSAFVFAEEEQSKRRVEEDEDDIDDFGGFNETQSQFGNYEQEEIDEDDERLLEAFLSKDAGPQVTLADLIIKKIKENDANIASGETRPLPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEKEGDLVSISYPMSVINKTIEEDRFDIPDVPMEED
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	453	2.2.26 [Sep-21-2011]
Q5E9N0	435	Bystin OS=Bos taurus GN=B	yes	no	0.867	0.903	0.458	1e-101
Q13895	437	Bystin OS=Homo sapiens GN	yes	no	0.852	0.883	0.470	1e-100
O54825	436	Bystin OS=Mus musculus GN	yes	no	0.834	0.866	0.471	7e-98
A9UNU6	414	Bystin OS=Monosiga brevic	N/A	no	0.845	0.925	0.458	5e-97
Q80WL2	436	Bystin OS=Rattus norvegic	yes	no	0.816	0.848	0.476	2e-96
A7S7F2	430	Bystin OS=Nematostella ve	N/A	no	0.871	0.918	0.467	3e-95
Q20932	449	Cell adhesion protein byn	yes	no	0.841	0.848	0.463	2e-93
Q54IS0	475	Bystin OS=Dictyostelium d	yes	no	0.724	0.690	0.488	5e-90
P51406	436	Bystin OS=Drosophila mela	yes	no	0.830	0.862	0.443	8e-86
O60071	449	Uncharacterized protein C	yes	no	0.662	0.668	0.477	5e-79

>sp|Q5E9N0|BYST_BOVIN Bystin OS=Bos taurus GN=BYSL PE=2 SV=1

 Score =  369 bits (946), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/401 (45%), Positives = 270/401 (67%), Gaps = 8/401 (1%)

Query: 23  DKSVASSKKRSKAAKHHQKQDKMISSGISSKILKEAMIQQKEVLEESEEPNATKSAFVFA 82
           D   A ++++ +      ++++ +   ++ +IL++A  QQ+E+  E+E  +  + A    
Sbjct: 27  DAVRAGTREKRRGRGTGDEEEEYVGPRLTRRILQQARQQQEEL--EAEHGSGDRPAVPRE 84

Query: 83  EEEQSKRRVEEDEDDIDDFGGFNETQSQFGNYEQEEI--DEDDERLLEAFLSKDAGPQVT 140
              +    V +D  D +++    +  ++ G   Q E+  D +DER +E F++++   + T
Sbjct: 85  RTTRLGPGVPQDGSDDEEWPTLEQAAARAGPGYQAEVVVDPEDERAIEMFMNQNPPARRT 144

Query: 141 LADLIIKKIKENDANIASGETR----PLPKLDESFINLYKGVGEFLSKYTAGKMPKAFKH 196
           LAD+I++K+ E    + +  +     P+P+LD   + +Y+GV E LSKY +GK+PKAFK 
Sbjct: 145 LADIIMEKLTEKQTEVETVMSEVSGFPVPQLDPRVLEVYRGVREVLSKYRSGKLPKAFKI 204

Query: 197 IPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNK 256
           IP+   WEQ+LY+TEPE WT  AM+QATRIF+SNL  + A+RFY LVLLPR+RDDI + K
Sbjct: 205 IPALSNWEQILYITEPEAWTAAAMYQATRIFASNLKERMAQRFYNLVLLPRVRDDIAEYK 264

Query: 257 KLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVAL 316
           +L+F LY ALKK+L+KP A+ KGIL PLC+SGTC LREA+I+GS+I K SIP+LHSS A+
Sbjct: 265 RLNFHLYMALKKALFKPGAWFKGILIPLCESGTCTLREAIIVGSIITKCSIPVLHSSAAM 324

Query: 317 LKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFV 376
           LK+AEMEY G  S F++LLL+KKY LPYRV+DA+V HF+ F  + R +PV+WHQ LL  V
Sbjct: 325 LKIAEMEYSGANSIFLRLLLDKKYALPYRVLDALVFHFLGFRTEKRELPVLWHQCLLTLV 384

Query: 377 QRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNR 417
           QRYK +L  E K+ L  LL+ Q H  ++PEI REL S+  R
Sbjct: 385 QRYKADLATEQKEALLELLRLQPHPQLSPEIRRELQSAVPR 425

Required for processing of 20S pre-rRNA precursor and biogenesis of 40S ribosomal subunits.
Bos taurus (taxid: 9913)

>sp|Q13895|BYST_HUMAN Bystin OS=Homo sapiens GN=BYSL PE=1 SV=3

 Score =  367 bits (941), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/402 (47%), Positives = 273/402 (67%), Gaps = 16/402 (3%)

Query: 27  ASSKKRSKAAKHHQKQDKMISSGISSKILKEAMIQQKEVLEESEEPNATKSAFVFAEEEQ 86
           A  +++ +     + +++ +   +S +IL++A  QQ+E+  E+E     K A   A  E+
Sbjct: 31  AGVREKRRGRGTGEAEEEYVGPRLSRRILQQARQQQEEL--EAEHGTGDKPA---APRER 85

Query: 87  SKR---RVEED-EDDIDDFGGFNE---TQSQFGNYEQEEIDEDDERLLEAFLSKDAGPQV 139
           + R   R+ +D  DD D+     E   T +  G++ +  +D +DER +E F++K+   + 
Sbjct: 86  TTRLGPRMPQDGSDDEDEEWPTLEKAATMTAAGHHAEVVVDPEDERAIEMFMNKNPPARR 145

Query: 140 TLADLIIKKIKENDANIASGETR----PLPKLDESFINLYKGVGEFLSKYTAGKMPKAFK 195
           TLAD+I++K+ E    + +  +     P+P+LD   + +Y+GV E LSKY +GK+PKAFK
Sbjct: 146 TLADIIMEKLTEKQTEVETVMSEVSGFPMPQLDPRVLEVYRGVREVLSKYRSGKLPKAFK 205

Query: 196 HIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKN 255
            IP+   WEQ+LY+TEPE WT  AM+QATRIF+SNL  + A+RFY LVLLPR+RDD+ + 
Sbjct: 206 IIPALSNWEQILYVTEPEAWTAAAMYQATRIFASNLKERMAQRFYNLVLLPRVRDDVAEY 265

Query: 256 KKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVA 315
           K+L+F LY ALKK+L+KP A+ KGIL PLC+SGTC LREA+I+GS+I K SIP+LHSS A
Sbjct: 266 KRLNFHLYMALKKALFKPGAWFKGILIPLCESGTCTLREAIIVGSIITKCSIPVLHSSAA 325

Query: 316 LLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAF 375
           +LK+AEMEY G  S F++LLL+KKY LPYRV+DA+V HF+ F  + R +PV+WHQ LL  
Sbjct: 326 MLKIAEMEYSGANSIFLRLLLDKKYALPYRVLDALVFHFLGFRTEKRELPVLWHQCLLTL 385

Query: 376 VQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNR 417
           VQRYK +L  + K+ L  LL+ Q H  ++PEI REL S+  R
Sbjct: 386 VQRYKADLATDQKEALLELLRLQPHPQLSPEIRRELQSAVPR 427

Required for processing of 20S pre-rRNA precursor and biogenesis of 40S ribosomal subunits. May be required for trophinin-dependent regulation of cell adhesion during implantation of human embryos.

Homo sapiens (taxid: 9606)

>sp|O54825|BYST_MOUSE Bystin OS=Mus musculus GN=Bysl PE=1 SV=3

 Score =  357 bits (917), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 183/388 (47%), Positives = 259/388 (66%), Gaps = 10/388 (2%)

Query: 46  ISSGISSKILKEAMIQQKEVLEESEEPNATKSAFVFAEEEQSKRRVEEDEDDIDD--FGG 103
           +   +S +IL++A  QQ+E+  E++     +SA       +    + +D  D +D  +  
Sbjct: 49  VGPRLSRRILQQARQQQEEL--ETDHGAGDRSAPPRERATRLGPGLPQDGSDEEDEEWPT 106

Query: 104 FNETQSQFGNYEQEEI--DEDDERLLEAFLSKDAGPQVTLADLIIKKIKENDANIASGET 161
             +     G   Q E+  D +DER +E F++K+   + TLAD+I++K+ E    + +  +
Sbjct: 107 LEKAAKMAGVDHQAEVIVDPEDERAIEMFMNKNPPVRRTLADIIMEKLTEKQTEVETVMS 166

Query: 162 R----PLPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTP 217
                P+P+LD   + +Y+GV E L KY +GK+PKAFK IP+   WEQ+LY+TEPE WT 
Sbjct: 167 EVSGFPMPQLDPRVLEVYRGVREVLCKYRSGKLPKAFKVIPALSNWEQILYVTEPEAWTA 226

Query: 218 NAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFN 277
            AM+QATRIF+SNL  + A+RFY LVLLPR+RDDI + K+L+F LY ALKK+L+KP A+ 
Sbjct: 227 AAMYQATRIFASNLKERMAQRFYNLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWF 286

Query: 278 KGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLE 337
           KGIL PLC+SGTC LREA+I+GS+I K SIP+LHSS A+LK+AEMEY G  S F++LLL+
Sbjct: 287 KGILIPLCESGTCTLREAIIVGSIITKCSIPVLHSSAAMLKIAEMEYSGANSIFLRLLLD 346

Query: 338 KKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKK 397
           KKY LPYRV+DA+V HF+ F  + R +PV+WHQ LL   QRYK +L  E K+ L  LL+ 
Sbjct: 347 KKYALPYRVLDALVFHFLAFRTEKRQLPVLWHQCLLTLAQRYKADLATEQKEALLELLRL 406

Query: 398 QKHKLVTPEIIRELDSSRNRGEKEGDLV 425
           Q H  ++PEI REL S+  R  ++G + 
Sbjct: 407 QPHPQLSPEIRRELQSAVPRDVEDGGVT 434

Required for processing of 20S pre-rRNA precursor and biogenesis of 40S ribosomal subunits.

Mus musculus (taxid: 10090)

>sp|A9UNU6|BYST_MONBE Bystin OS=Monosiga brevicollis GN=bysl PE=3 SV=1

 Score =  355 bits (910), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 182/397 (45%), Positives = 266/397 (67%), Gaps = 14/397 (3%)

Query: 22  DDKSVASSKKRSKAAKHHQKQDKMISSGISSKILKEAMIQQKEVLEESEEPNATKSAFVF 81
           DDKSV  +K+  +  +   + D+ + + ++ K  +  +I ++  L+++EE          
Sbjct: 20  DDKSVRRNKRSKQRGR--MQDDESVDAPLNEK--QAQVIARQAQLQQNEED--------V 67

Query: 82  AEEEQSKRRVEEDEDDIDDFGGFNETQSQFGNYEQEEIDEDDERLLEAFLSKDAGPQVTL 141
           ++ EQ+ + V+ D    DD G  ++       Y   EIDE DE  L AF+  +   + TL
Sbjct: 68  SDSEQTGQPVDIDVPS-DDEGQADDLAQPEDAYRHFEIDEHDEVALRAFMPAEPAQRRTL 126

Query: 142 ADLIIKKIKENDANIASGETRPLPK-LDESFINLYKGVGEFLSKYTAGKMPKAFKHIPST 200
           AD+I++KI+     +AS  ++  P+ L+   I +Y+GVG+ LS+Y +GK+PKAFK IP  
Sbjct: 127 ADIIMEKIQGKRTEVASQVSQTGPRELNPKVIEVYQGVGQVLSRYRSGKLPKAFKIIPRL 186

Query: 201 QMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHF 260
           + WE+++Y+TEPE WT  +M+ ATR+F+SNL  K A+RFY L+LLPR+RDDI + K+L+F
Sbjct: 187 KNWEEIVYITEPENWTAASMYAATRLFASNLKEKMAQRFYNLILLPRVRDDIAEYKRLNF 246

Query: 261 ALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLA 320
            LYQA+KK+++KP AF KG L PLC++G C LREAVIIG ++ + SIP+LHSS A+LK+A
Sbjct: 247 HLYQAIKKAIFKPGAFFKGFLLPLCEAGDCTLREAVIIGGILVRKSIPVLHSSAAMLKMA 306

Query: 321 EMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYK 380
           EM Y G TS F+++LL+KKY LP+RVVDA+VAHF RF  D R +PV+WHQ LL FVQRYK
Sbjct: 307 EMPYSGATSIFLRVLLDKKYSLPFRVVDAVVAHFYRFNADHRQLPVLWHQCLLVFVQRYK 366

Query: 381 NELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNR 417
            ++  E K  L  +L+   H  +TPEI REL  S++R
Sbjct: 367 EDITSEQKRALLDVLRSHNHYAITPEIRRELVQSKSR 403

Required for processing of 20S pre-rRNA precursor and biogenesis of 40S ribosomal subunits.

Monosiga brevicollis (taxid: 81824)

>sp|Q80WL2|BYST_RAT Bystin OS=Rattus norvegicus GN=Bysl PE=2 SV=3

 Score =  353 bits (906), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 181/380 (47%), Positives = 253/380 (66%), Gaps = 10/380 (2%)

Query: 46  ISSGISSKILKEAMIQQKEVLEESEEPNATKSAFVFAEEEQSKRRVEEDEDDIDD--FGG 103
           +   +S +IL++A  QQ+E+  E+E     + A       +    V +D  D +D  +  
Sbjct: 49  VGPRLSRRILQQARQQQEEL--ETEHATGDRPAKPRERATRLGPGVPQDGSDEEDEEWPT 106

Query: 104 FNETQSQFGNYEQEEI--DEDDERLLEAFLSKDAGPQVTLADLIIKKIKENDANIASGET 161
             +         Q E+  D +DER +E F++K+   + TLAD+I++K+ E    + +  +
Sbjct: 107 LEKAAKMTVVNHQAEVVVDPEDERAIEMFMNKNPPVRRTLADIIMEKLTEKQTEVETVMS 166

Query: 162 R----PLPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTP 217
                P+P+LD   + +Y+GV E L KY +G +PKAFK IP+   WEQ+LY+TEPE WT 
Sbjct: 167 EVSGFPMPQLDPRVLEVYRGVREVLCKYRSGILPKAFKIIPALSNWEQILYVTEPEAWTA 226

Query: 218 NAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFN 277
            AM+QATRIF+SNL  + A+RFY LVLLPR+RDDI + K+L+F LY ALKK+L+KP A+ 
Sbjct: 227 AAMYQATRIFASNLKERMAQRFYNLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWF 286

Query: 278 KGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLE 337
           KGIL PLC+SGTC LREA+I+GS+I K SIP+LHSS A+LK+AEMEY G +S F++LLL+
Sbjct: 287 KGILIPLCESGTCTLREAIIVGSIISKCSIPVLHSSAAMLKIAEMEYSGASSIFLRLLLD 346

Query: 338 KKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKK 397
           KKY LPYRV+DA+V HF+ F  + R +PV+WHQ LL   QRYK +L  E K+ L  LL+ 
Sbjct: 347 KKYALPYRVLDALVFHFLAFRTEKRQLPVLWHQCLLTLAQRYKADLATEQKEALLELLRL 406

Query: 398 QKHKLVTPEIIRELDSSRNR 417
           Q H  ++PEI REL S+  R
Sbjct: 407 QPHPQLSPEIRRELQSAVPR 426

Required for processing of 20S pre-rRNA precursor and biogenesis of 40S ribosomal subunits.

Rattus norvegicus (taxid: 10116)

>sp|A7S7F2|BYST_NEMVE Bystin OS=Nematostella vectensis GN=bysl PE=3 SV=1

 Score =  349 bits (895), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 187/400 (46%), Positives = 266/400 (66%), Gaps = 5/400 (1%)

Query: 23  DKSVASSKKRSKAAKHHQKQ--DKMISSGISSKILKEAMIQQKEVLEE-SEEPNATKSAF 79
           +K+V    KR K  +  Q    +  +   +S KIL++A  QQ E++EE        +   
Sbjct: 20  EKNVTKPSKRVKHRRERQADSVESFVEEKLSKKILEQARQQQDELMEEYGFRKTGDRKTL 79

Query: 80  VFAEEEQSKRRVEEDEDDIDDFGGFNETQSQFGNYEQEEIDEDDERLLEAFLSKDAGPQV 139
             A+       ++  +DD +D      + +    YE  E+DE++E+  E F+S++A  + 
Sbjct: 80  KSAQTTLGTPDLDRIDDDDEDDSDDGASMTSETYYENVEVDEEEEKAFEMFMSQEAPTRR 139

Query: 140 TLADLIIKKIKENDANIAS--GETRPLPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHI 197
           TLAD+I++KI++    I S   E    P++DE  + ++KGVGE L KY +GK+PKAFK I
Sbjct: 140 TLADVIMEKIQDKKTEIESHMSEQSTAPQMDERLVKVFKGVGEILKKYRSGKLPKAFKFI 199

Query: 198 PSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKK 257
           PS   WE+VL++TEP++W+  A+FQAT+IF SNLNAK A+RF+ LVLLPRI+DDI + K+
Sbjct: 200 PSLTNWEEVLFITEPDEWSAAALFQATKIFVSNLNAKMAQRFFNLVLLPRIQDDIAEYKR 259

Query: 258 LHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALL 317
           L++ LY ALKK+L+KPAAF KGIL P+C+SG C+LREA+II SV+ K +IP+LHSS  +L
Sbjct: 260 LNYHLYMALKKALFKPAAFFKGILLPMCESGNCSLREAIIISSVLAKTTIPVLHSSAVIL 319

Query: 318 KLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQ 377
           K+AEM Y G  S F++ L +KKY LPYRV+DA V HF+RFL D R +PV+WHQ LL FVQ
Sbjct: 320 KIAEMNYSGANSIFLRTLFDKKYALPYRVIDAAVYHFLRFLTDKRTLPVLWHQCLLTFVQ 379

Query: 378 RYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNR 417
           RYK ++  E K+ L  L +   H  +TPE+ REL  S++R
Sbjct: 380 RYKEDISSEQKEALMELCRVHVHDKITPEVRRELVHSKSR 419

Required for processing of 20S pre-rRNA precursor and biogenesis of 40S ribosomal subunits.

Nematostella vectensis (taxid: 45351)

>sp|Q20932|BYN1_CAEEL Cell adhesion protein byn-1 OS=Caenorhabditis elegans GN=byn-1 PE=3 SV=2

 Score =  343 bits (880), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 182/393 (46%), Positives = 255/393 (64%), Gaps = 12/393 (3%)

Query: 30  KKRSKAAKHHQKQDKMISSGISSKILKEAMIQQKEVLEESEEPNATKSAFVFAEEEQSKR 89
           +++ K  +   + D+ +   +SSKIL EA   +K++LEE+ E   T+SA     + Q   
Sbjct: 36  REKQKRKREDSQTDEFVPDSLSSKILNEA---RKQLLEEALERQETESATSSVPKRQRGA 92

Query: 90  RVEED-EDDIDDFGGFNETQSQFGNYEQE--EIDEDDERLLEAFLSKDAGPQVTLADLII 146
            +  D   D  D    +  +     +E +  E+D  DE  L  FL KDA    TL D+I 
Sbjct: 93  WLGADASGDKSDDDDDDNEEEDDNGFEDQVVELDPRDEADLARFLKKDAIQMSTLYDIIQ 152

Query: 147 KKI--KENDANIASGETRP----LPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPST 200
            KI  K+NDA +A  +  P    +  +D   + +Y+ +G+++SKY +GK+PKAFK IP  
Sbjct: 153 AKIEAKQNDAELALSQVDPNEFNMRDMDPEVVEMYEQIGQYMSKYRSGKVPKAFKIIPKM 212

Query: 201 QMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHF 260
             WEQ+L+LT+PE WT  AM+QATR+F+SN+N K  +RFY LVLLPR+RDDI + KKL++
Sbjct: 213 INWEQILFLTKPETWTAAAMYQATRLFASNMNPKMCQRFYTLVLLPRLRDDIDEFKKLNY 272

Query: 261 ALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLA 320
            LYQAL K++YKPAAF KG++ PL +SGTC LREAVI  SV+ K+ IP+ HS+ A+L++A
Sbjct: 273 HLYQALCKAIYKPAAFFKGLILPLLESGTCTLREAVIFSSVLTKVPIPIFHSAAAMLRIA 332

Query: 321 EMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYK 380
           EMEY G  S F++ L++KKY LPYR VD +V HF+R   D R MPV+WHQ LLA  QRYK
Sbjct: 333 EMEYTGANSVFLRALIDKKYALPYRAVDGVVNHFIRLKTDERDMPVLWHQCLLALCQRYK 392

Query: 381 NELQKEDKDDLRILLKKQKHKLVTPEIIRELDS 413
           N+L  E K  +  L++   H L++PEI REL+S
Sbjct: 393 NDLNAEQKAAIYELIRFHGHYLISPEIRRELES 425

Caenorhabditis elegans (taxid: 6239)

>sp|Q54IS0|BYST_DICDI Bystin OS=Dictyostelium discoideum GN=bysl PE=3 SV=1

 Score =  332 bits (850), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 167/342 (48%), Positives = 240/342 (70%), Gaps = 14/342 (4%)

Query: 87  SKRRVE-EDEDDIDDFGGFNETQSQFGNYEQEEIDEDDERLLEAFLSKDAG--------P 137
           +KRR    D D+ D F  F++T+SQFG   + EIDE+DER+L  F+    G         
Sbjct: 122 NKRRSNGNDFDENDGFEQFSDTESQFGVGGEVEIDEEDERVLSMFMGGGGGDGQEQQFQT 181

Query: 138 QVTLADLIIKKIKENDANIASGETRPLPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHI 197
           + TL D+I  K+KE+++   S E    PK+    I++Y  VG+ L  YT+GK+P+AF+ +
Sbjct: 182 RFTLGDIIESKLKEHESRQVSSENAINPKV----IDVYTKVGKLLETYTSGKIPRAFRIL 237

Query: 198 PSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKK 257
           P+   WE +LYLT P+KWTP+++  AT++F  + N+K  +RF  +V+LPR+RD+I + KK
Sbjct: 238 PNFTNWEDLLYLTRPDKWTPHSIRVATKLFCMSTNSKITQRFLSIVVLPRVRDNIAEYKK 297

Query: 258 LHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALL 317
           L++ LY ALKKSLY+PAAF K IL PL +SG C L EA IIGSV+ K+SIP+LHSSVAL+
Sbjct: 298 LNYHLYMALKKSLYRPAAFYKAILLPLAESGDCTLLEAKIIGSVVCKVSIPVLHSSVALM 357

Query: 318 KLAEM-EYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFV 376
           KL+++  Y G TS FI++L +KKY LPYRV+D +V HF+ F E+ R +PV+WH++LL+FV
Sbjct: 358 KLSQLTRYNGATSMFIRMLCDKKYALPYRVIDGLVDHFVMFDEEVRELPVLWHRALLSFV 417

Query: 377 QRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRG 418
           QRYK ++ K+ K+ L+I+L+K  H ++T EI REL  S +RG
Sbjct: 418 QRYKTDITKDQKEKLKIILRKHNHHIITAEIRRELFFSNSRG 459

Required for processing of 20S pre-rRNA precursor and biogenesis of 40S ribosomal subunits.

Dictyostelium discoideum (taxid: 44689)

>sp|P51406|BYS_DROME Bystin OS=Drosophila melanogaster GN=bys PE=1 SV=2

 Score =  318 bits (814), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 177/399 (44%), Positives = 249/399 (62%), Gaps = 23/399 (5%)

Query: 26  VASSKKRSKAAKHHQKQDKMISSGISSKILKEAMIQQKEVLEESEEPNATKSAFVFAEEE 85
           VA +K + K  K   ++   I +  S KIL  A +QQ E+ EE+     T     F+  +
Sbjct: 26  VAKNKNKDKV-KLRAEESANIDARSSQKILAAAKLQQLELDEENFPSLVTVKKVNFSLND 84

Query: 86  QSKRRVEEDEDDIDDFGGFNETQSQFGNYEQEEIDEDDERLLEAFL--SKDAGPQVTLAD 143
                V+EDE+        NET          ++DEDD    E F   +++    + L+ 
Sbjct: 85  G---HVKEDEE-------VNETDLM----ADLDMDEDDVAAFERFQQPAQEGKRTLHLSK 130

Query: 144 LIIKKIKENDANIAS-----GETRPLPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIP 198
           +I++KI+E +A+I +     G  + + ++D     +Y+GV + L +Y +GK+PKAFK IP
Sbjct: 131 MIMQKIQEKEADIHTKISDEGSLK-IEEIDPKVKEMYEGVRDVLKRYRSGKIPKAFKIIP 189

Query: 199 STQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKL 258
             + WEQ+L++TEP  W+  AMFQ TRIF S L+   A+RFY LVLLPR+RDD+ + KKL
Sbjct: 190 KLRNWEQILFITEPHNWSAAAMFQGTRIFCSVLSQAMAQRFYNLVLLPRVRDDLCEYKKL 249

Query: 259 HFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLK 318
           +  LY ALK++L+KPAAF KGI+ PL + G C LREA+I GSV+ + SIP+LHSS  LLK
Sbjct: 250 NMHLYNALKRALFKPAAFMKGIILPLLEGGDCTLREAIIFGSVVARSSIPVLHSSACLLK 309

Query: 319 LAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQR 378
           + EM Y G  S FI+  L+K+Y LPYRVVDA V HF+RF  D R +PV+WHQSLL F QR
Sbjct: 310 ICEMAYSGANSIFIRYFLDKRYALPYRVVDAAVFHFLRFENDKRELPVLWHQSLLTFAQR 369

Query: 379 YKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNR 417
           YKN++  E +D L  LLKK+ H  +TP++ REL ++  R
Sbjct: 370 YKNDISSEQRDALLQLLKKKSHFKITPDVRRELQAASCR 408

Required for processing of 20S pre-rRNA precursor and biogenesis of 40S ribosomal subunits.

Drosophila melanogaster (taxid: 7227)

>sp|O60071|YBB9_SCHPO Uncharacterized protein C13G1.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC13G1.09 PE=1 SV=1

 Score =  295 bits (755), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 152/318 (47%), Positives = 215/318 (67%), Gaps = 18/318 (5%)

Query: 119 IDEDDERLLEAFLSKDAGPQ--------VTLADLIIKKIKENDANIASGETRP------- 163
           ID+ D  L + FL   +G +         +L+DLI++KI E +A  A GE  P       
Sbjct: 127 IDDADRDLFDRFLPTVSGEEGDLTEEKTTSLSDLIMQKINEAEAR-ARGEYIPSAEEEEN 185

Query: 164 -LPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQ 222
            LP L    I +Y  VG  LSKY +GK+PKAFK IP+   WE +LYLT P+ WTP+A ++
Sbjct: 186 ALPPLPPKVIEVYSKVGVLLSKYRSGKIPKAFKIIPTLSNWEDILYLTRPDMWTPHACYE 245

Query: 223 ATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILF 282
           ATRIF SNL   +A+ F  +++L R+RDDIR+NKKL++ LY ALKK+LYKP+++ KG LF
Sbjct: 246 ATRIFISNLKPVQAQHFLTVIILERVRDDIRENKKLNYHLYMALKKALYKPSSWFKGFLF 305

Query: 283 PLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGL 342
           PL +   C LREA IIGS+++K+S+P+LHS+ ALL+L E +  G TS FI++LL+KKY L
Sbjct: 306 PLVQEN-CTLREAAIIGSILQKVSVPVLHSAAALLRLTEFDLSGATSVFIRILLDKKYAL 364

Query: 343 PYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKL 402
           PY+V+D++V +FMR+    R + V+ HQS+L F QRYK ++  E KD L  +++ + H  
Sbjct: 365 PYKVLDSLVFYFMRWKSLERPLAVLEHQSMLVFAQRYKFDITPEQKDALLEVVRLKGHYS 424

Query: 403 VTPEIIRELDSSRNRGEK 420
           + PEI REL +S +RGE+
Sbjct: 425 IGPEIRRELLNSASRGEE 442

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	453
224121608	443	predicted protein [Populus trichocarpa]	0.973	0.995	0.755	0.0
118483587	443	unknown [Populus trichocarpa]	0.973	0.995	0.752	0.0
255549595	448	Bystin, putative [Ricinus communis] gi|2	0.982	0.993	0.769	0.0
225463866	440	PREDICTED: bystin-like [Vitis vinifera]	0.966	0.995	0.721	0.0
225436863	440	PREDICTED: bystin-like [Vitis vinifera]	0.966	0.995	0.717	0.0
224117072	429	predicted protein [Populus trichocarpa]	0.911	0.962	0.753	0.0
356505324	442	PREDICTED: bystin-like [Glycine max]	0.973	0.997	0.715	1e-176
296086673	431	unnamed protein product [Vitis vinifera]	0.947	0.995	0.692	1e-175
356511772	441	PREDICTED: bystin-like [Glycine max]	0.969	0.995	0.710	1e-175
449443768	442	PREDICTED: bystin-like [Cucumis sativus]	0.962	0.986	0.658	1e-170

>gi|224121608|ref|XP_002330743.1| predicted protein [Populus trichocarpa] gi|222872519|gb|EEF09650.1| predicted protein [Populus trichocarpa]

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/449 (75%), Positives = 394/449 (87%), Gaps = 8/449 (1%)

Query: 5   QKRERFQNPQPFLPSNDDDKSVASSKKRSKAAKHHQKQDKMISSGISSKILKEAMIQQKE 64
           +KRER QNP+PFLP  D D   +S+K RSKA+KHHQKQ KMISSG+SSKILK+A+IQQKE
Sbjct: 3   KKRERHQNPEPFLP-EDTDSIASSTKTRSKASKHHQKQQKMISSGMSSKILKQALIQQKE 61

Query: 65  VLEESEEPNATKSAFVFAEEEQSKRRVEEDEDDIDDFGGFNETQSQFGNYEQEEIDEDDE 124
           +  E   PN         EE       E  ED IDDF GF+ETQSQF +Y  EEIDE+DE
Sbjct: 62  IQAEERNPNFN----ALEEELPEPEGEECAEDQIDDFSGFSETQSQFNDYP-EEIDENDE 116

Query: 125 RLLEAFLSKDAGPQVTLADLIIKKIKENDANIASGETRPLPKLDESFINLYKGVGEFLSK 184
           +LLEAFLSKDAGPQ TLADLII+K+K+ DAN++S E +P+PKLD+S I+LYKGVGE+LSK
Sbjct: 117 KLLEAFLSKDAGPQRTLADLIIEKLKKTDANVSS-ELQPIPKLDQSLIDLYKGVGEYLSK 175

Query: 185 YTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVL 244
           YTAGK+PKAFKHIPS Q+WE +LYLTEP+KW+PNAM+QATRIFSSNL AKKAERFY+LVL
Sbjct: 176 YTAGKIPKAFKHIPSMQLWEDILYLTEPQKWSPNAMYQATRIFSSNLGAKKAERFYRLVL 235

Query: 245 LPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEK 304
           LPR+RDDIR NK+LHF+LYQALKKSLYKPAAFNKGIL PLCKSGTC LREAV++GS+I+K
Sbjct: 236 LPRVRDDIRTNKRLHFSLYQALKKSLYKPAAFNKGILLPLCKSGTCTLREAVVVGSIIQK 295

Query: 305 ISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVM 364
           +SIPMLHS VA+LKLAEMEYCGTTSYFIKLLL+KKY LP+RV+DA+VAHFMRFLEDTR+M
Sbjct: 296 VSIPMLHSCVAVLKLAEMEYCGTTSYFIKLLLDKKYALPFRVLDAVVAHFMRFLEDTRIM 355

Query: 365 PVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEKEGDL 424
           PVIWHQSLL+FVQRYKNELQKEDKD+LR L+ +QKHKLV+PEIIRELD+SRNRGEK+ D 
Sbjct: 356 PVIWHQSLLSFVQRYKNELQKEDKDNLRRLVLRQKHKLVSPEIIRELDNSRNRGEKD-DP 414

Query: 425 VSISYPMSVINKTIEEDRFDIPDVPMEED 453
           +SI+ P+SVINKTIEEDRFDIP+VPMEED
Sbjct: 415 MSITSPVSVINKTIEEDRFDIPEVPMEED 443

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483587|gb|ABK93690.1| unknown [Populus trichocarpa]

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/449 (75%), Positives = 392/449 (87%), Gaps = 8/449 (1%)

Query: 5   QKRERFQNPQPFLPSNDDDKSVASSKKRSKAAKHHQKQDKMISSGISSKILKEAMIQQKE 64
           +KRER QNP+PFLP  D D   +S+K RSKA+KHHQKQ KMISSG+SSKILK+A+IQQKE
Sbjct: 3   KKRERHQNPEPFLP-EDTDSIASSTKTRSKASKHHQKQQKMISSGMSSKILKQALIQQKE 61

Query: 65  VLEESEEPNATKSAFVFAEEEQSKRRVEEDEDDIDDFGGFNETQSQFGNYEQEEIDEDDE 124
           +  E   PN         EE       E  ED IDDF GF+E QSQF +Y  E IDE+DE
Sbjct: 62  IQAEERNPNFN----ALEEELLEPEGEECAEDQIDDFSGFSEAQSQFNDYP-EGIDENDE 116

Query: 125 RLLEAFLSKDAGPQVTLADLIIKKIKENDANIASGETRPLPKLDESFINLYKGVGEFLSK 184
           +LLEAFLSKDAGPQ TLADLII+K+K+ DAN++S E +P+PKLD+S I+LYKGVGE+LSK
Sbjct: 117 KLLEAFLSKDAGPQRTLADLIIEKLKKTDANVSS-ELQPIPKLDQSLIDLYKGVGEYLSK 175

Query: 185 YTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVL 244
           YTAGK+PKAFKHIPS Q+WE +LYLTEP+KW+PNAM+QATRIFSSNL AKKAERFY+LVL
Sbjct: 176 YTAGKIPKAFKHIPSMQLWEDILYLTEPQKWSPNAMYQATRIFSSNLGAKKAERFYRLVL 235

Query: 245 LPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEK 304
           LPR+RDDIR NK+LHF+LYQALKKSLYKPAAFNKGIL PLCKSGTC LREAVI+GS+I+K
Sbjct: 236 LPRVRDDIRTNKRLHFSLYQALKKSLYKPAAFNKGILLPLCKSGTCTLREAVIVGSIIQK 295

Query: 305 ISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVM 364
           +SIPMLHS VA+LKLAEMEYCGTTSYFIKLLL+KKY LP+RV+DA+VAHFMRFLEDTR+M
Sbjct: 296 VSIPMLHSCVAVLKLAEMEYCGTTSYFIKLLLDKKYALPFRVLDAVVAHFMRFLEDTRIM 355

Query: 365 PVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEKEGDL 424
           PVIWHQSLL+FVQRYKNELQKEDKD+LR L+ +QKHKLV+PEIIRELD+SRNRGEK+ D 
Sbjct: 356 PVIWHQSLLSFVQRYKNELQKEDKDNLRRLVLRQKHKLVSPEIIRELDNSRNRGEKD-DP 414

Query: 425 VSISYPMSVINKTIEEDRFDIPDVPMEED 453
           +SI+ P+SVINKTIEEDRFDIP+VPMEED
Sbjct: 415 MSITSPVSVINKTIEEDRFDIPEVPMEED 443

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549595|ref|XP_002515849.1| Bystin, putative [Ricinus communis] gi|223545004|gb|EEF46518.1| Bystin, putative [Ricinus communis]

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/451 (76%), Positives = 408/451 (90%), Gaps = 6/451 (1%)

Query: 4   KQKRERFQNPQPFLPSNDDDKSVASSKKRSKAAKHHQKQDKMISSGISSKILKEAMIQQK 63
           K+KR R QNPQPF+    DD S ++SKKRSKA K HQKQ+KMISSG+SSKILKEAM  Q+
Sbjct: 3   KKKRSRHQNPQPFM-REVDDSSGSNSKKRSKAPKQHQKQEKMISSGMSSKILKEAM-IQQ 60

Query: 64  EVLEESEEPNATKSAFVFAEEEQSK-RRVEEDEDDIDDFGGFNETQSQFGNYEQEEIDED 122
           + ++E EE N    AFV AEEE ++ +R E +E+D+DDFGGF+ETQ+QFG+Y+ EEI+ED
Sbjct: 61  KEIQEEEETNPINDAFVAAEEEAARHQREEVEEEDVDDFGGFDETQTQFGDYD-EEINED 119

Query: 123 DERLLEAFLSKDAGPQVTLADLIIKKIKENDANIASGETRPLPKLDESFINLYKGVGEFL 182
           +E+LLEAFLSKDAG Q TLADLII+KIK+ DAN++S ET PLPKLDES I+LY+G+GEFL
Sbjct: 120 EEKLLEAFLSKDAGQQQTLADLIIEKIKKQDANVSS-ETHPLPKLDESLIDLYRGLGEFL 178

Query: 183 SKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKL 242
           SKYTAGKMPKAFKHIP+ Q+WE VLYLT+PE W+PNAM+QATRIF+SN  AKKAERFY+L
Sbjct: 179 SKYTAGKMPKAFKHIPAMQLWEDVLYLTKPENWSPNAMYQATRIFASNFGAKKAERFYRL 238

Query: 243 VLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVI 302
           VLLPRIRDDI+++K+LHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVI+GS++
Sbjct: 239 VLLPRIRDDIKQHKRLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIVGSIV 298

Query: 303 EKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTR 362
           +K+SIPMLHSSVALLKLAEMEYCGTTSYFIKLL+EKKY LPYRVVDA+V+H+M+FL+DTR
Sbjct: 299 QKVSIPMLHSSVALLKLAEMEYCGTTSYFIKLLVEKKYALPYRVVDAVVSHYMKFLDDTR 358

Query: 363 VMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEKEG 422
           +MPVIWHQSLLAFVQRYKNELQKEDKD+LR L+ KQKHKLVTPEI+RELD+SRNRGEK+ 
Sbjct: 359 IMPVIWHQSLLAFVQRYKNELQKEDKDNLRTLVGKQKHKLVTPEIVRELDNSRNRGEKD- 417

Query: 423 DLVSISYPMSVINKTIEEDRFDIPDVPMEED 453
           D +SI+ P+SVINK IEEDRFDIPDVPMEED
Sbjct: 418 DPMSITSPVSVINKVIEEDRFDIPDVPMEED 448

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463866|ref|XP_002267654.1| PREDICTED: bystin-like [Vitis vinifera]

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/449 (72%), Positives = 387/449 (86%), Gaps = 11/449 (2%)

Query: 5   QKRERFQNPQPFLPSNDDDKSVASSKKRSKAAKHHQKQDKMISSGISSKILKEAMIQQKE 64
           +KR +  NPQPFL   DDD  V SSKKRSK AK HQ ++K+ISSG+SSKILKEA++QQKE
Sbjct: 3   KKRSKHHNPQPFLA--DDD--VVSSKKRSKPAKLHQAEEKLISSGMSSKILKEALLQQKE 58

Query: 65  VLEESEEPNATKSAFVFAEEEQSKRRVEEDEDDIDDFGGFNETQSQFGNYEQEEIDEDDE 124
           + +E+ + N   S+F   E+  +K    ++E+D+DDF GF+ETQS FG YE+E  +ED E
Sbjct: 59  IEDEARDQNP-HSSFFAVEDVPAK----DEEEDVDDFAGFDETQSHFGGYEEEIDEED-E 112

Query: 125 RLLEAFLSKDAGPQVTLADLIIKKIKENDANIASGETRPLPKLDESFINLYKGVGEFLSK 184
           +LLEAFLSK+AGP+ TLAD+I ++IKE D   +S E RPLPKLD S I+LYKGVG+ LS+
Sbjct: 113 KLLEAFLSKNAGPERTLADVIAERIKEKDEKFSS-EARPLPKLDASIIDLYKGVGKLLSR 171

Query: 185 YTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVL 244
           YTAGK+PKAFKHIPS Q WE+VLYLTEPE W+PNA++QATRIF+SNL  KKAERFY+LVL
Sbjct: 172 YTAGKLPKAFKHIPSVQHWEEVLYLTEPENWSPNAVYQATRIFASNLGGKKAERFYRLVL 231

Query: 245 LPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEK 304
           LPR+R+DIRKNK+LHFALYQ LKKSLYKPAAF KGILFPLC+SGTCNLREAVIIGS+IEK
Sbjct: 232 LPRVREDIRKNKRLHFALYQTLKKSLYKPAAFFKGILFPLCESGTCNLREAVIIGSIIEK 291

Query: 305 ISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVM 364
           +SIP LHSSVALLKLAEMEYCGTTSYFIKLLL+KKY LPYR VDA+VAHF+RF+EDTR+M
Sbjct: 292 VSIPALHSSVALLKLAEMEYCGTTSYFIKLLLDKKYALPYRAVDAVVAHFIRFIEDTRIM 351

Query: 365 PVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEKEGDL 424
           PVIWHQSLL FVQRYKN+L+KEDKD L+ L++ Q+H+LVTP+I REL++SRNRGE+E DL
Sbjct: 352 PVIWHQSLLTFVQRYKNQLRKEDKDSLKTLIENQRHRLVTPDISRELNNSRNRGEEEDDL 411

Query: 425 VSISYPMSVINKTIEEDRFDIPDVPMEED 453
           + IS P+SVINKTIEEDRFDIPDVPMEED
Sbjct: 412 MLISSPISVINKTIEEDRFDIPDVPMEED 440

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436863|ref|XP_002272540.1| PREDICTED: bystin-like [Vitis vinifera]

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/449 (71%), Positives = 379/449 (84%), Gaps = 11/449 (2%)

Query: 5   QKRERFQNPQPFLPSNDDDKSVASSKKRSKAAKHHQKQDKMISSGISSKILKEAMIQQKE 64
           +KR ++ NPQPFL     D  VASSKKRSK AKHHQ ++KMISSG+SSKILKEA+ QQKE
Sbjct: 3   KKRSKYHNPQPFLA----DDGVASSKKRSKPAKHHQAEEKMISSGMSSKILKEALFQQKE 58

Query: 65  VLEESEEPNATKSAFVFAEEEQSKRRVEEDEDDIDDFGGFNETQSQFGNYEQEEIDEDDE 124
           + +E+ + N   S F   EE            D+DDF GF++TQS FG YE+E  DE+DE
Sbjct: 59  IEDEARDQNPNSSFFAVEEEPAKDEEE-----DVDDFAGFDDTQSHFGGYEEEI-DEEDE 112

Query: 125 RLLEAFLSKDAGPQVTLADLIIKKIKENDANIASGETRPLPKLDESFINLYKGVGEFLSK 184
           +LLE FLSK+AGP+ TLAD+I +KIKE D   +S E RPLPKLD S I+LYKGVG+ L++
Sbjct: 113 KLLEVFLSKNAGPERTLADVIAEKIKEKDEQFSS-EVRPLPKLDTSIIDLYKGVGKLLNR 171

Query: 185 YTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVL 244
           YTAGK+PKAFKHIPS Q WE+VLYLTEPE W+PNA++QATRIF+SNL  KKAERFY+LVL
Sbjct: 172 YTAGKLPKAFKHIPSVQHWEEVLYLTEPENWSPNAVYQATRIFASNLGGKKAERFYRLVL 231

Query: 245 LPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEK 304
           LPR+R+DI+KNK+LHFALYQ LKKSLYKPAAF KGILFPLC+SGTCNLREAVIIGS+IEK
Sbjct: 232 LPRVREDIQKNKRLHFALYQTLKKSLYKPAAFFKGILFPLCESGTCNLREAVIIGSIIEK 291

Query: 305 ISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVM 364
           +SIP LHSSVALLKLAEMEYCGTTSYFIK+LL+KKY LPYR VDA+ AHF++F+EDTR+M
Sbjct: 292 VSIPALHSSVALLKLAEMEYCGTTSYFIKILLDKKYALPYRAVDAVAAHFIKFIEDTRIM 351

Query: 365 PVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEKEGDL 424
           PVIWHQSLL FVQRYKN+L+KEDKD L+ L++ Q+HKLVTPEI REL++SRNRGEKE DL
Sbjct: 352 PVIWHQSLLTFVQRYKNQLRKEDKDSLKTLIENQRHKLVTPEISRELNNSRNRGEKEDDL 411

Query: 425 VSISYPMSVINKTIEEDRFDIPDVPMEED 453
           + IS P+SVINKTIEEDRFDIPDVPMEED
Sbjct: 412 MLISSPISVINKTIEEDRFDIPDVPMEED 440

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117072|ref|XP_002317469.1| predicted protein [Populus trichocarpa] gi|222860534|gb|EEE98081.1| predicted protein [Populus trichocarpa]

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/422 (75%), Positives = 370/422 (87%), Gaps = 9/422 (2%)

Query: 1   MAKKQKRERFQNPQPFLPSNDDDKSVASSKKRSKAAKHHQKQDKMISSGISSKILKEAMI 60
           MAKK  RER QNP+PFL   +D  S+AS+K R+KA+KHHQKQ KMISSG+SSKILK A+I
Sbjct: 1   MAKK--RERHQNPEPFL--KEDTDSIASTKTRTKASKHHQKQQKMISSGMSSKILKAALI 56

Query: 61  QQKEV-LEESEEPNATKSAFVFAEEEQSKRRVEEDEDDIDDFGGFNETQSQFGNYEQEEI 119
           QQKE+  EE+ E N   +A      E+ + +  EDE  IDDF GF+ETQSQF +Y  EEI
Sbjct: 57  QQKEIQAEEAGERNPNFNALEEELPEREEEQYAEDE--IDDFSGFSETQSQFNDYP-EEI 113

Query: 120 DEDDERLLEAFLSKDAGPQVTLADLIIKKIKENDANIASGETRPLPKLDESFINLYKGVG 179
           DE+DE+LLEAFLSKDAGPQ TL DLII KIK+ DA+++S ET+P+PKLD+S I+LYKGVG
Sbjct: 114 DENDEKLLEAFLSKDAGPQQTLTDLIIDKIKKRDAHVSS-ETQPMPKLDQSLIDLYKGVG 172

Query: 180 EFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERF 239
           E+LSKYTAGK+PKAFKHIPS Q+WE VLYLTEP+KW+P AM+QATRIFSSNL AKKAERF
Sbjct: 173 EYLSKYTAGKIPKAFKHIPSMQLWEDVLYLTEPQKWSPAAMYQATRIFSSNLGAKKAERF 232

Query: 240 YKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIG 299
           Y+LVLLPR+RDDIR NK+LHF+LYQALKKSLYKPAAFNKGIL PLCKSGTCNLREAVI+G
Sbjct: 233 YRLVLLPRVRDDIRMNKRLHFSLYQALKKSLYKPAAFNKGILLPLCKSGTCNLREAVIVG 292

Query: 300 SVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLE 359
           S+I+K+SIP+LHS V LLKLAEM+YCGTTSYFIKLLL+KKY LPYRVVDA+V HFMRFLE
Sbjct: 293 SIIQKVSIPVLHSCVTLLKLAEMDYCGTTSYFIKLLLDKKYALPYRVVDAVVGHFMRFLE 352

Query: 360 DTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGE 419
           DTR+MPVIWHQSLL+FVQRYKNELQKEDKD+LR L+ +QKHKLV+PEIIRELD+SRNRGE
Sbjct: 353 DTRIMPVIWHQSLLSFVQRYKNELQKEDKDNLRRLVLRQKHKLVSPEIIRELDNSRNRGE 412

Query: 420 KE 421
           K+
Sbjct: 413 KD 414

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505324|ref|XP_003521441.1| PREDICTED: bystin-like [Glycine max]

 Score =  625 bits (1613), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 325/454 (71%), Positives = 381/454 (83%), Gaps = 13/454 (2%)

Query: 1   MAKKQKRERFQNPQPFLPSNDDDKSVASSKKRSKAAKHHQKQDKMISSGISSKILKEAMI 60
           MAK+  +ER QNP+PF P   D    A +KKRSK  K HQ++++ I+  +SSKI+K+A+I
Sbjct: 1   MAKR--KERIQNPEPFDPYGADP---AKTKKRSKPPKRHQQEEQFIAPKLSSKIMKQALI 55

Query: 61  QQKEVLEE-SEEPNATKSAFVFAEEEQSKRRVEEDEDDIDDFGGFNETQSQFGNYEQEEI 119
           QQKE  +E + E NA  + F     E+     E+  DDIDDF GF+ETQSQF  Y+ EEI
Sbjct: 56  QQKEEEKEETHENNAAANLF-----EEVPNFEEDGGDDIDDFAGFSETQSQFAGYD-EEI 109

Query: 120 DEDDERLLEAFLSKDAGPQVTLADLIIKKIKENDANIASGETRPLPKLDESFINLYKGVG 179
           +E+DERL+EAF+SK+ G Q TLADLI+++IKE DA+IAS E RP+PKLD+S I++YKGVG
Sbjct: 110 NEEDERLMEAFISKEPGQQKTLADLIVQRIKEKDASIAS-ENRPVPKLDKSIIDIYKGVG 168

Query: 180 EFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERF 239
             LS+YT GK+PKAFKHIPS Q+WE+VLY+TEPE W+PNA++QATRIF+SN  AKKAERF
Sbjct: 169 THLSRYTIGKIPKAFKHIPSMQLWEEVLYITEPENWSPNALYQATRIFASNFGAKKAERF 228

Query: 240 YKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIG 299
           YKLVLLPR+R+DIRKNK+LHFALYQ LKK+LYKPAAF KGILFPLC+S TC LREAVIIG
Sbjct: 229 YKLVLLPRVREDIRKNKRLHFALYQTLKKALYKPAAFFKGILFPLCESRTCTLREAVIIG 288

Query: 300 SVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLE 359
           S+IEK+SIP LHSSVALLKL+ MEYCGTTSYFIKLLLEKKY LPYRVVDA+VAHFMRF  
Sbjct: 289 SIIEKVSIPPLHSSVALLKLSGMEYCGTTSYFIKLLLEKKYALPYRVVDAVVAHFMRFFN 348

Query: 360 DTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGE 419
           +TR+MPVIWHQSLLAFVQRYKNELQKEDKD LR LL+KQKHKLVTPEI RELD S NRGE
Sbjct: 349 ETRIMPVIWHQSLLAFVQRYKNELQKEDKDRLRNLLEKQKHKLVTPEISRELDHSCNRGE 408

Query: 420 KEGDLVSISYPMSVINKTIEEDRFDIPDVPMEED 453
           KE DL+SIS P+ VINKTIEEDRFDIPDVPMEED
Sbjct: 409 KEEDLMSISSPVYVINKTIEEDRFDIPDVPMEED 442

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086673|emb|CBI32308.3| unnamed protein product [Vitis vinifera]

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 311/449 (69%), Positives = 368/449 (81%), Gaps = 20/449 (4%)

Query: 5   QKRERFQNPQPFLPSNDDDKSVASSKKRSKAAKHHQKQDKMISSGISSKILKEAMIQQKE 64
           +KR ++ NPQPFL     D  VASSKKRSK AKHHQ ++KMISSG+SSKILKEA+ QQKE
Sbjct: 3   KKRSKYHNPQPFLA----DDGVASSKKRSKPAKHHQAEEKMISSGMSSKILKEALFQQKE 58

Query: 65  VLEESEEPNATKSAFVFAEEEQSKRRVEEDEDDIDDFGGFNETQSQFGNYEQEEIDEDDE 124
           + +E+ + N   S F   EE            D+DDF GF++TQS FG YE+E  +ED E
Sbjct: 59  IEDEARDQNPNSSFFAVEEEPAKDEEE-----DVDDFAGFDDTQSHFGGYEEEIDEED-E 112

Query: 125 RLLEAFLSKDAGPQVTLADLIIKKIKENDANIASGETRPLPKLDESFINLYKGVGEFLSK 184
           +LLE FLSK+AGP+ TLAD+I +KIKE D   +S E RPLPKLD S I+LYKGVG+ L++
Sbjct: 113 KLLEVFLSKNAGPERTLADVIAEKIKEKDEQFSS-EVRPLPKLDTSIIDLYKGVGKLLNR 171

Query: 185 YTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVL 244
           YTAGK+PKAFKHIPS Q WE+VLYLTEPE W+PNA++QATRIF+SNL  KKAERFY+LVL
Sbjct: 172 YTAGKLPKAFKHIPSVQHWEEVLYLTEPENWSPNAVYQATRIFASNLGGKKAERFYRLVL 231

Query: 245 LPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEK 304
           LPR+R+DI+KNK+LHFALYQ LKKSLYKPAAF KGILFPLC+SGTCNLREAVIIGS+IEK
Sbjct: 232 LPRVREDIQKNKRLHFALYQTLKKSLYKPAAFFKGILFPLCESGTCNLREAVIIGSIIEK 291

Query: 305 ISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVM 364
           +SIP LHSSVALLKLAEMEYCGTTSYFIK+LL+KKY LPYR VDA+ AHF++F+EDTR+M
Sbjct: 292 VSIPALHSSVALLKLAEMEYCGTTSYFIKILLDKKYALPYRAVDAVAAHFIKFIEDTRIM 351

Query: 365 PVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEKEGDL 424
           PVIWHQSLL FVQRYKN+L+KEDKD L+ L++ Q+HKLVTPEI REL++SRNRGEKE DL
Sbjct: 352 PVIWHQSLLTFVQRYKNQLRKEDKDSLKTLIENQRHKLVTPEISRELNNSRNRGEKEDDL 411

Query: 425 VSISYPMSVINKTIEEDRFDIPDVPMEED 453
           +          K  +EDRFDIPDVPMEED
Sbjct: 412 MP---------KPSKEDRFDIPDVPMEED 431

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511772|ref|XP_003524597.1| PREDICTED: bystin-like [Glycine max]

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 319/449 (71%), Positives = 374/449 (83%), Gaps = 10/449 (2%)

Query: 5   QKRERFQNPQPFLPSNDDDKSVASSKKRSKAAKHHQKQDKMISSGISSKILKEAMIQQKE 64
           +++ER QNP+PF P   D    A +KKRSKA K HQ++++ I+  +SSKI+K+A+IQQKE
Sbjct: 3   KRKERIQNPEPFDPYGADP---AKTKKRSKAPKRHQQEEQFIAPKLSSKIMKQALIQQKE 59

Query: 65  VLEESEEPNATKSAFVFAEEEQSKRRVEEDEDDIDDFGGFNETQSQFGNYEQEEIDEDDE 124
             +E    N   + F     E+     E+  DDIDDF GF+ETQSQF  Y+ EEI+E+DE
Sbjct: 60  EEKEEAPENNAANLF-----EEVPDVEEDGGDDIDDFAGFSETQSQFAEYD-EEINEEDE 113

Query: 125 RLLEAFLSKDAGPQVTLADLIIKKIKENDANIASGETRPLPKLDESFINLYKGVGEFLSK 184
           RL+EAF  K+ G Q TLADLI+++IKE DA++AS E RP+PKLD S I++YKGVG  LS+
Sbjct: 114 RLMEAFALKEPGQQKTLADLIVQRIKEKDASVAS-ENRPVPKLDNSIIDIYKGVGTHLSR 172

Query: 185 YTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVL 244
           YT GK+PKAFKHIPS Q+WE+VLY+TEPE W+PNA++QATRIF+SN  AKKAERFYKLVL
Sbjct: 173 YTIGKIPKAFKHIPSMQLWEEVLYITEPENWSPNALYQATRIFASNFGAKKAERFYKLVL 232

Query: 245 LPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEK 304
           LPR+R+DIRKNK+LHFALYQ LKK+LYKPAAF KGILF LC+S TC LREAVIIGS+IEK
Sbjct: 233 LPRVREDIRKNKRLHFALYQTLKKALYKPAAFFKGILFSLCESRTCTLREAVIIGSIIEK 292

Query: 305 ISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVM 364
           +SIP LHSSVALLKL+ MEYCGTTSYFIKLLLEKKY LPYRVVDA+VAHF RFL +TR+M
Sbjct: 293 VSIPPLHSSVALLKLSGMEYCGTTSYFIKLLLEKKYALPYRVVDAVVAHFTRFLNETRIM 352

Query: 365 PVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEKEGDL 424
           PVIWHQSLLAFVQRYKNELQKEDKD LR LL+KQKHKLVTPEI RELD SRNRGEKE DL
Sbjct: 353 PVIWHQSLLAFVQRYKNELQKEDKDRLRNLLEKQKHKLVTPEISRELDHSRNRGEKEEDL 412

Query: 425 VSISYPMSVINKTIEEDRFDIPDVPMEED 453
           +SIS P+ VINKTIEEDRFDIPDVPMEED
Sbjct: 413 MSISSPVYVINKTIEEDRFDIPDVPMEED 441

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443768|ref|XP_004139649.1| PREDICTED: bystin-like [Cucumis sativus] gi|449475424|ref|XP_004154452.1| PREDICTED: bystin-like [Cucumis sativus]

 Score =  605 bits (1561), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 297/451 (65%), Positives = 368/451 (81%), Gaps = 15/451 (3%)

Query: 4   KQKRERFQNPQPFLPSNDDDKSVASSKKRSKAAK-HHQKQDKMISSGISSKILKEAMIQQ 62
           K+ R+R +NPQPF+ +++D      +K+ SKA K +HQ+++ ++SSG+SSKI +EA IQQ
Sbjct: 5   KRTRDRLRNPQPFITTDED---TVPNKQHSKARKRNHQEEETLLSSGMSSKIFREARIQQ 61

Query: 63  KEVLEESEEPNATKSAFVFAEEEQSKRRVEEDEDDIDDFGGFNETQSQFGNYEQEEIDED 122
           +E   E+         F   +EE  K     DE+DIDDF GF+ETQ++ G Y++E+I E+
Sbjct: 62  RENEFEARNQQHPNPFFDLPDEELPK-----DEEDIDDFTGFSETQTEIGTYKEEDIAEE 116

Query: 123 DERLLEAFLSKDAGPQVTLADLIIKKIKENDANIASGETRPLPKLDESFINLYKGVGEFL 182
           DERL+EAFLSKD GPQ TLADLI++KIKENDA I S + +PLPKLD S I+LYKGVG+ L
Sbjct: 117 DERLVEAFLSKDGGPQHTLADLIVRKIKENDA-IVSSDAKPLPKLDTSVIDLYKGVGKSL 175

Query: 183 SKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKL 242
           +KYTAGK+PKAFK IPS  +WE+VLYLTEPE W+PNAMFQATRIF+SNL  KK E+FYKL
Sbjct: 176 NKYTAGKVPKAFKRIPSMPLWEEVLYLTEPENWSPNAMFQATRIFASNLGVKKVEKFYKL 235

Query: 243 VLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVI 302
           VLLP +R DI+KNK+LHFALYQALKK+LYKP AF KGIL PLC+SGTC+LREAVIIGS+I
Sbjct: 236 VLLPAVRRDIQKNKRLHFALYQALKKALYKPTAFFKGILLPLCESGTCSLREAVIIGSII 295

Query: 303 EKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTR 362
           EK++IP+LHSSVAL KLAEM YCGTTSYFIKL+LEKKY LPYRVVDA+VAHFMRFLE+TR
Sbjct: 296 EKVTIPVLHSSVALFKLAEMGYCGTTSYFIKLILEKKYALPYRVVDAVVAHFMRFLEETR 355

Query: 363 VMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEKEG 422
           VMPVIWHQSLLAF+QRYKNEL+ EDK ++RILL+  +HK VTPEI+REL++SR+RGEK+ 
Sbjct: 356 VMPVIWHQSLLAFLQRYKNELRNEDKANIRILLESHRHKDVTPEILRELNNSRSRGEKDT 415

Query: 423 DLVSISYPMSVINKTIEEDRFDIPDVPMEED 453
            +       + + K +EEDRF+IP VPMEED
Sbjct: 416 TITP-----APLTKPVEEDRFNIPYVPMEED 441

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	453
TAIR|locus:2028686	444	ENP1 "AT1G31660" [Arabidopsis	0.971	0.990	0.592	1.5e-136
MGI|MGI:1858419	436	Bysl "bystin-like" [Mus muscul	0.657	0.683	0.546	2.7e-88
RGD|727959	436	Bysl "bystin-like" [Rattus nor	0.640	0.665	0.551	3.9e-87
UNIPROTKB|Q13895	437	BYSL "Bystin" [Homo sapiens (t	0.816	0.846	0.466	1.6e-86
UNIPROTKB|Q5E9N0	435	BYSL "Bystin" [Bos taurus (tax	0.821	0.855	0.463	6.9e-86
UNIPROTKB|F1NPV8	417	BYSL "Uncharacterized protein"	0.655	0.712	0.549	1e-84
WB|WBGene00000276	449	byn-1 [Caenorhabditis elegans	0.812	0.819	0.460	2.4e-83
FB|FBgn0010292	436	bys "by S6" [Drosophila melano	0.611	0.635	0.523	3.6e-78
DICTYBASE|DDB_G0288565	475	bysl "bystin" [Dictyostelium d	0.807	0.770	0.416	6.2e-78
POMBASE|SPBC13G1.09	449	SPBC13G1.09 "bystin family U3	0.615	0.621	0.501	2.3e-74

TAIR|locus:2028686 ENP1 "AT1G31660" [Arabidopsis thaliana (taxid:3702)]

 Score = 1337 (475.7 bits), Expect = 1.5e-136, P = 1.5e-136
 Identities = 271/457 (59%), Positives = 336/457 (73%)

Query:     1 MAKKQKRERFQNPQPFLPXXXXXXXXXXXXXXXXXXXHHQKQDKMISSGISSKILKEAMI 60
             MAKK  R+R  N QPF+                     HQKQ+K+I +G+S KI+K+A+ 
Sbjct:     1 MAKK--RDRIVNTQPFISDDASVASSRKRSKVPKT---HQKQEKLIEAGMSEKIMKQALA 55

Query:    61 QQKEVL-EESEEPNATKSAFVFAEEE---QSKRRVXXXXXXXXXFGGFNETQSQFGNYXX 116
             QQKEV  EE+ E N + +AF  A      + ++ +         F G  E QSQF     
Sbjct:    56 QQKEVADEENAERNPSSAAFAVAGAATAGEEQKILEEEEDDIDDFDGTFENQSQFDKQEE 115

Query:   117 XXXXXXXXRLLEAFLSKDAGPQVTLADLIIKKIKENDANIASGETRPLPKLDESFINLYK 176
                     +L E+FL+K+A PQ TL D+IIKK+K+ DA++A  E RP PK+D +   LYK
Sbjct:   116 INEDDE--KLFESFLNKNAPPQRTLTDIIIKKLKDKDADLAE-EERPDPKMDPAITKLYK 172

Query:   177 GVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKA 236
             GVG+F+S+YT GK+PKAFK + S + WE VLYLTEPEKW+PNA++QATRIF+SNL  ++ 
Sbjct:   173 GVGKFMSEYTVGKLPKAFKLVTSMEHWEDVLYLTEPEKWSPNALYQATRIFASNLKDRQV 232

Query:   237 ERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAV 296
             +RFY  VLLPR+R+DIRK+KKLHFALYQALKKSLYKP+AFN+GILFPLCKSGTCNLREAV
Sbjct:   233 QRFYNYVLLPRVREDIRKHKKLHFALYQALKKSLYKPSAFNQGILFPLCKSGTCNLREAV 292

Query:   297 IIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMR 356
             IIGS++EK SIPMLHS VAL +LAEM+YCGTTSYFIK+LLEKKY +PYRV+DA+VAHFMR
Sbjct:   293 IIGSILEKCSIPMLHSCVALNRLAEMDYCGTTSYFIKVLLEKKYCMPYRVLDALVAHFMR 352

Query:   357 FLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRN 416
             F++D RVMPVIWHQSLL FVQRYK E+ KEDK+ L+ LL++QKH LVTPEI+REL  SRN
Sbjct:   353 FVDDIRVMPVIWHQSLLTFVQRYKYEILKEDKEHLQTLLQRQKHHLVTPEILRELKDSRN 412

Query:   417 RGEKEGDLVSISYPMSVINKTIEEDRFDIPDVPMEED 453
             RGEKE  +V    P+       +EDRFDIP+VPMEED
Sbjct:   413 RGEKEDPMVDNFAPVPA-----KEDRFDIPEVPMEED 444

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0006364 "rRNA processing" evidence=IMP

GO:0009553 "embryo sac development" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

MGI|MGI:1858419 Bysl "bystin-like" [Mus musculus (taxid:10090)]

 Score = 857 (306.7 bits), Expect = 2.7e-88, Sum P(2) = 2.7e-88
 Identities = 165/302 (54%), Positives = 221/302 (73%)

Query:   125 RLLEAFLSKDAGPQVTLADLIIKKIKENDANIAS--GETR--PLPKLDESFINLYKGVGE 180
             R +E F++K+   + TLAD+I++K+ E    + +   E    P+P+LD   + +Y+GV E
Sbjct:   130 RAIEMFMNKNPPVRRTLADIIMEKLTEKQTEVETVMSEVSGFPMPQLDPRVLEVYRGVRE 189

Query:   181 FLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFY 240
              L KY +GK+PKAFK IP+   WEQ+LY+TEPE WT  AM+QATRIF+SNL  + A+RFY
Sbjct:   190 VLCKYRSGKLPKAFKVIPALSNWEQILYVTEPEAWTAAAMYQATRIFASNLKERMAQRFY 249

Query:   241 KLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGS 300
              LVLLPR+RDDI + K+L+F LY ALKK+L+KP A+ KGIL PLC+SGTC LREA+I+GS
Sbjct:   250 NLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWFKGILIPLCESGTCTLREAIIVGS 309

Query:   301 VIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLED 360
             +I K SIP+LHSS A+LK+AEMEY G  S F++LLL+KKY LPYRV+DA+V HF+ F  +
Sbjct:   310 IITKCSIPVLHSSAAMLKIAEMEYSGANSIFLRLLLDKKYALPYRVLDALVFHFLAFRTE 369

Query:   361 TRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEK 420
              R +PV+WHQ LL   QRYK +L  E K+ L  LL+ Q H  ++PEI REL S+  R  +
Sbjct:   370 KRQLPVLWHQCLLTLAQRYKADLATEQKEALLELLRLQPHPQLSPEIRRELQSAVPRDVE 429

Query:   421 EG 422
             +G
Sbjct:   430 DG 431

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0001825 "blastocyst formation" evidence=IMP

GO:0001829 "trophectodermal cell differentiation" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007155 "cell adhesion" evidence=ISS

GO:0008283 "cell proliferation" evidence=IMP

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0045177 "apical part of cell" evidence=IDA

RGD|727959 Bysl "bystin-like" [Rattus norvegicus (taxid:10116)]

 Score = 845 (302.5 bits), Expect = 3.9e-87, Sum P(2) = 3.9e-87
 Identities = 162/294 (55%), Positives = 217/294 (73%)

Query:   125 RLLEAFLSKDAGPQVTLADLIIKKIKENDANIAS--GETR--PLPKLDESFINLYKGVGE 180
             R +E F++K+   + TLAD+I++K+ E    + +   E    P+P+LD   + +Y+GV E
Sbjct:   130 RAIEMFMNKNPPVRRTLADIIMEKLTEKQTEVETVMSEVSGFPMPQLDPRVLEVYRGVRE 189

Query:   181 FLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFY 240
              L KY +G +PKAFK IP+   WEQ+LY+TEPE WT  AM+QATRIF+SNL  + A+RFY
Sbjct:   190 VLCKYRSGILPKAFKIIPALSNWEQILYVTEPEAWTAAAMYQATRIFASNLKERMAQRFY 249

Query:   241 KLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGS 300
              LVLLPR+RDDI + K+L+F LY ALKK+L+KP A+ KGIL PLC+SGTC LREA+I+GS
Sbjct:   250 NLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWFKGILIPLCESGTCTLREAIIVGS 309

Query:   301 VIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLED 360
             +I K SIP+LHSS A+LK+AEMEY G +S F++LLL+KKY LPYRV+DA+V HF+ F  +
Sbjct:   310 IISKCSIPVLHSSAAMLKIAEMEYSGASSIFLRLLLDKKYALPYRVLDALVFHFLAFRTE 369

Query:   361 TRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSS 414
              R +PV+WHQ LL   QRYK +L  E K+ L  LL+ Q H  ++PEI REL S+
Sbjct:   370 KRQLPVLWHQCLLTLAQRYKADLATEQKEALLELLRLQPHPQLSPEIRRELQSA 423

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0001825 "blastocyst formation" evidence=ISO

GO:0001829 "trophectodermal cell differentiation" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005881 "cytoplasmic microtubule" evidence=IDA

GO:0007420 "brain development" evidence=IEP

GO:0008283 "cell proliferation" evidence=ISO

GO:0030182 "neuron differentiation" evidence=IEP

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0042995 "cell projection" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0045177 "apical part of cell" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEP

GO:0071347 "cellular response to interleukin-1" evidence=IEP

GO:0071363 "cellular response to growth factor stimulus" evidence=IEP

GO:0071407 "cellular response to organic cyclic compound" evidence=IEP

UNIPROTKB|Q13895 BYSL "Bystin" [Homo sapiens (taxid:9606)]

 Score = 865 (309.6 bits), Expect = 1.6e-86, P = 1.6e-86
 Identities = 180/386 (46%), Positives = 256/386 (66%)

Query:    40 QKQDKMISSGISSKILKEAMIQQKEVLEESEEPNATKSAFVFAEEEQSKR---RV--XXX 94
             + +++ +   +S +IL++A  QQ+E+  E+E     K A   A  E++ R   R+     
Sbjct:    44 EAEEEYVGPRLSRRILQQARQQQEEL--EAEHGTGDKPA---APRERTTRLGPRMPQDGS 98

Query:    95 XXXXXXFGGFNE--TQSQFGNYXXXXXXXXXXRLLEAFLSKDAGPQVTLADLIIKKIKEN 152
                   +    +  T +  G++          R +E F++K+   + TLAD+I++K+ E 
Sbjct:    99 DDEDEEWPTLEKAATMTAAGHHAEVVVDPEDERAIEMFMNKNPPARRTLADIIMEKLTEK 158

Query:   153 DANIAS--GETR--PLPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLY 208
                + +   E    P+P+LD   + +Y+GV E LSKY +GK+PKAFK IP+   WEQ+LY
Sbjct:   159 QTEVETVMSEVSGFPMPQLDPRVLEVYRGVREVLSKYRSGKLPKAFKIIPALSNWEQILY 218

Query:   209 LTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKK 268
             +TEPE WT  AM+QATRIF+SNL  + A+RFY LVLLPR+RDD+ + K+L+F LY ALKK
Sbjct:   219 VTEPEAWTAAAMYQATRIFASNLKERMAQRFYNLVLLPRVRDDVAEYKRLNFHLYMALKK 278

Query:   269 SLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTT 328
             +L+KP A+ KGIL PLC+SGTC LREA+I+GS+I K SIP+LHSS A+LK+AEMEY G  
Sbjct:   279 ALFKPGAWFKGILIPLCESGTCTLREAIIVGSIITKCSIPVLHSSAAMLKIAEMEYSGAN 338

Query:   329 SYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDK 388
             S F++LLL+KKY LPYRV+DA+V HF+ F  + R +PV+WHQ LL  VQRYK +L  + K
Sbjct:   339 SIFLRLLLDKKYALPYRVLDALVFHFLGFRTEKRELPVLWHQCLLTLVQRYKADLATDQK 398

Query:   389 DDLRILLKKQKHKLVTPEIIRELDSS 414
             + L  LL+ Q H  ++PEI REL S+
Sbjct:   399 EALLELLRLQPHPQLSPEIRRELQSA 424

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007155 "cell adhesion" evidence=TAS

GO:0007565 "female pregnancy" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|Q5E9N0 BYSL "Bystin" [Bos taurus (taxid:9913)]

 Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
 Identities = 176/380 (46%), Positives = 251/380 (66%)

Query:    41 KQDKMISSGISSKILKEAMIQQKEVLEESEEPNATKSAFVFAEEEQSKRRVXXXXXXXXX 100
             ++++ +   ++ +IL++A  QQ+E+  E+E  +  + A       +    V         
Sbjct:    45 EEEEYVGPRLTRRILQQARQQQEEL--EAEHGSGDRPAVPRERTTRLGPGVPQDGSDDEE 102

Query:   101 FGGFNETQSQFG-NYXXXXXXX-XXXRLLEAFLSKDAGPQVTLADLIIKKIKENDANIAS 158
             +    +  ++ G  Y           R +E F++++   + TLAD+I++K+ E    + +
Sbjct:   103 WPTLEQAAARAGPGYQAEVVVDPEDERAIEMFMNQNPPARRTLADIIMEKLTEKQTEVET 162

Query:   159 --GETR--PLPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEK 214
                E    P+P+LD   + +Y+GV E LSKY +GK+PKAFK IP+   WEQ+LY+TEPE 
Sbjct:   163 VMSEVSGFPVPQLDPRVLEVYRGVREVLSKYRSGKLPKAFKIIPALSNWEQILYITEPEA 222

Query:   215 WTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPA 274
             WT  AM+QATRIF+SNL  + A+RFY LVLLPR+RDDI + K+L+F LY ALKK+L+KP 
Sbjct:   223 WTAAAMYQATRIFASNLKERMAQRFYNLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPG 282

Query:   275 AFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKL 334
             A+ KGIL PLC+SGTC LREA+I+GS+I K SIP+LHSS A+LK+AEMEY G  S F++L
Sbjct:   283 AWFKGILIPLCESGTCTLREAIIVGSIITKCSIPVLHSSAAMLKIAEMEYSGANSIFLRL 342

Query:   335 LLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRIL 394
             LL+KKY LPYRV+DA+V HF+ F  + R +PV+WHQ LL  VQRYK +L  E K+ L  L
Sbjct:   343 LLDKKYALPYRVLDALVFHFLGFRTEKRELPVLWHQCLLTLVQRYKADLATEQKEALLEL 402

Query:   395 LKKQKHKLVTPEIIRELDSS 414
             L+ Q H  ++PEI REL S+
Sbjct:   403 LRLQPHPQLSPEIRRELQSA 422

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|F1NPV8 BYSL "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 824 (295.1 bits), Expect = 1.0e-84, Sum P(2) = 1.0e-84
 Identities = 167/304 (54%), Positives = 219/304 (72%)

Query:   125 RLLEAFLSKDAGPQVTLADLIIKKI--KENDANIASGET--RPLPKLDESFINLYKGVGE 180
             + LE F+S+    + TLAD+I++KI  K+ +   A  E   RP+P+LD   + +Y+GV E
Sbjct:   108 KALEVFMSRAPPLRRTLADVIMEKITEKQTEVQTALSELSGRPMPQLDPRVLEVYRGVRE 167

Query:   181 FLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFY 240
              LSKY +GK+PKAFK IP+   WEQ+LY+TEPE WT  AM+QATRIFSSNL  + A+RFY
Sbjct:   168 VLSKYRSGKLPKAFKIIPALSNWEQILYITEPETWTAAAMYQATRIFSSNLKERMAQRFY 227

Query:   241 KLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGS 300
              LVLLPR+RDDI + K+L+F LY ALKK+L+KP A+ KGIL PLC+SGTC LREA+IIGS
Sbjct:   228 NLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWFKGILIPLCESGTCTLREAIIIGS 287

Query:   301 VIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLED 360
             ++ K SIP+LHSS A+LK+AEM Y G  S F++LL++KKY LP+RVVDA+V HF+ F  D
Sbjct:   288 ILTKCSIPVLHSSAAMLKIAEMPYNGANSIFLRLLIDKKYALPFRVVDALVFHFLAFRTD 347

Query:   361 TRVMPVIWHQSLLAFVQRYKN--ELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRG 418
              R +PV+WHQS L+   R     EL K  K+ L  LLK   H  ++ EI REL +S+ R 
Sbjct:   348 QRTLPVLWHQSFLSLRVRXXKVLELLKFHKEVLLELLKFHSHPQISGEIRRELANSKTR- 406

Query:   419 EKEG 422
             + EG
Sbjct:   407 DVEG 410

GO:0005730 "nucleolus" evidence=IEA

WB|WBGene00000276 byn-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
 Identities = 175/380 (46%), Positives = 242/380 (63%)

Query:    43 DKMISSGISSKILKEAMIQQKEVLEESEEPNATKSAFVFAEEEQSKRRVXXXXXXXXXFG 102
             D+ +   +SSKIL EA   +K++LEE+ E   T+SA     + Q    +           
Sbjct:    49 DEFVPDSLSSKILNEA---RKQLLEEALERQETESATSSVPKRQRGAWLGADASGDKSDD 105

Query:   103 GFNETQSQFGNYXXXXXXXXXXRL---LEAFLSKDAGPQVTLADLIIKKI--KENDANIA 157
               ++ + +  N           R    L  FL KDA    TL D+I  KI  K+NDA +A
Sbjct:   106 DDDDNEEEDDNGFEDQVVELDPRDEADLARFLKKDAIQMSTLYDIIQAKIEAKQNDAELA 165

Query:   158 SGETRP----LPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPE 213
               +  P    +  +D   + +Y+ +G+++SKY +GK+PKAFK IP    WEQ+L+LT+PE
Sbjct:   166 LSQVDPNEFNMRDMDPEVVEMYEQIGQYMSKYRSGKVPKAFKIIPKMINWEQILFLTKPE 225

Query:   214 KWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKP 273
              WT  AM+QATR+F+SN+N K  +RFY LVLLPR+RDDI + KKL++ LYQAL K++YKP
Sbjct:   226 TWTAAAMYQATRLFASNMNPKMCQRFYTLVLLPRLRDDIDEFKKLNYHLYQALCKAIYKP 285

Query:   274 AAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIK 333
             AAF KG++ PL +SGTC LREAVI  SV+ K+ IP+ HS+ A+L++AEMEY G  S F++
Sbjct:   286 AAFFKGLILPLLESGTCTLREAVIFSSVLTKVPIPIFHSAAAMLRIAEMEYTGANSVFLR 345

Query:   334 LLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRI 393
              L++KKY LPYR VD +V HF+R   D R MPV+WHQ LLA  QRYKN+L  E K  +  
Sbjct:   346 ALIDKKYALPYRAVDGVVNHFIRLKTDERDMPVLWHQCLLALCQRYKNDLNAEQKAAIYE 405

Query:   394 LLKKQKHKLVTPEIIRELDS 413
             L++   H L++PEI REL+S
Sbjct:   406 LIRFHGHYLISPEIRRELES 425

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0007276 "gamete generation" evidence=IMP

FB|FBgn0010292 bys "by S6" [Drosophila melanogaster (taxid:7227)]

 Score = 763 (273.6 bits), Expect = 3.6e-78, Sum P(2) = 3.6e-78
 Identities = 147/281 (52%), Positives = 200/281 (71%)

Query:   141 LADLIIKKIKENDANI---ASGE-TRPLPKLDESFINLYKGVGEFLSKYTAGKMPKAFKH 196
             L+ +I++KI+E +A+I    S E +  + ++D     +Y+GV + L +Y +GK+PKAFK 
Sbjct:   128 LSKMIMQKIQEKEADIHTKISDEGSLKIEEIDPKVKEMYEGVRDVLKRYRSGKIPKAFKI 187

Query:   197 IPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNK 256
             IP  + WEQ+L++TEP  W+  AMFQ TRIF S L+   A+RFY LVLLPR+RDD+ + K
Sbjct:   188 IPKLRNWEQILFITEPHNWSAAAMFQGTRIFCSVLSQAMAQRFYNLVLLPRVRDDLCEYK 247

Query:   257 KLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVAL 316
             KL+  LY ALK++L+KPAAF KGI+ PL + G C LREA+I GSV+ + SIP+LHSS  L
Sbjct:   248 KLNMHLYNALKRALFKPAAFMKGIILPLLEGGDCTLREAIIFGSVVARSSIPVLHSSACL 307

Query:   317 LKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFV 376
             LK+ EM Y G  S FI+  L+K+Y LPYRVVDA V HF+RF  D R +PV+WHQSLL F 
Sbjct:   308 LKICEMAYSGANSIFIRYFLDKRYALPYRVVDAAVFHFLRFENDKRELPVLWHQSLLTFA 367

Query:   377 QRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNR 417
             QRYKN++  E +D L  LLKK+ H  +TP++ REL ++  R
Sbjct:   368 QRYKNDISSEQRDALLQLLKKKSHFKITPDVRRELQAASCR 408

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

DICTYBASE|DDB_G0288565 bysl "bystin" [Dictyostelium discoideum (taxid:44689)]

 Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
 Identities = 162/389 (41%), Positives = 251/389 (64%)

Query:    40 QKQDKMISSGISSKILKEAMIQQKEVLEESEEPNATKSAFVFAEEEQSKRRVXXXXXXXX 99
             +KQ+K+++     + ++  ++   + +++ ++          A+++ +KRR         
Sbjct:    84 EKQEKLLT--FEQERIQSKLLSFNDFIDDDDDDED-------ADQDDNKRRSNGNDFDEN 134

Query:   100 X-FGGFNETQSQFGNYXXXXXXXXXXRLLEAFLSKDAGP--------QVTLADLIIKKIK 150
               F  F++T+SQFG            R+L  F+    G         + TL D+I  K+K
Sbjct:   135 DGFEQFSDTESQFGVGGEVEIDEEDERVLSMFMGGGGGDGQEQQFQTRFTLGDIIESKLK 194

Query:   151 ENDANIASGETRPLPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLT 210
             E+++   S E    PK+    I++Y  VG+ L  YT+GK+P+AF+ +P+   WE +LYLT
Sbjct:   195 EHESRQVSSENAINPKV----IDVYTKVGKLLETYTSGKIPRAFRILPNFTNWEDLLYLT 250

Query:   211 EPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSL 270
              P+KWTP+++  AT++F  + N+K  +RF  +V+LPR+RD+I + KKL++ LY ALKKSL
Sbjct:   251 RPDKWTPHSIRVATKLFCMSTNSKITQRFLSIVVLPRVRDNIAEYKKLNYHLYMALKKSL 310

Query:   271 YKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEM-EYCGTTS 329
             Y+PAAF K IL PL +SG C L EA IIGSV+ K+SIP+LHSSVAL+KL+++  Y G TS
Sbjct:   311 YRPAAFYKAILLPLAESGDCTLLEAKIIGSVVCKVSIPVLHSSVALMKLSQLTRYNGATS 370

Query:   330 YFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKD 389
              FI++L +KKY LPYRV+D +V HF+ F E+ R +PV+WH++LL+FVQRYK ++ K+ K+
Sbjct:   371 MFIRMLCDKKYALPYRVIDGLVDHFVMFDEEVRELPVLWHRALLSFVQRYKTDITKDQKE 430

Query:   390 DLRILLKKQKHKLVTPEIIRELDSSRNRG 418
              L+I+L+K  H ++T EI REL  S +RG
Sbjct:   431 KLKIILRKHNHHIITAEIRRELFFSNSRG 459

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

POMBASE|SPBC13G1.09 SPBC13G1.09 "bystin family U3 and U14 snoRNA associated protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 722 (259.2 bits), Expect = 2.3e-74, Sum P(2) = 2.3e-74
 Identities = 145/289 (50%), Positives = 204/289 (70%)

Query:   140 TLADLIIKKIKENDANIASGETRP--------LPKLDESFINLYKGVGEFLSKYTAGKMP 191
             +L+DLI++KI E +A  A GE  P        LP L    I +Y  VG  LSKY +GK+P
Sbjct:   156 SLSDLIMQKINEAEAR-ARGEYIPSAEEEENALPPLPPKVIEVYSKVGVLLSKYRSGKIP 214

Query:   192 KAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDD 251
             KAFK IP+   WE +LYLT P+ WTP+A ++ATRIF SNL   +A+ F  +++L R+RDD
Sbjct:   215 KAFKIIPTLSNWEDILYLTRPDMWTPHACYEATRIFISNLKPVQAQHFLTVIILERVRDD 274

Query:   252 IRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLH 311
             IR+NKKL++ LY ALKK+LYKP+++ KG LFPL +   C LREA IIGS+++K+S+P+LH
Sbjct:   275 IRENKKLNYHLYMALKKALYKPSSWFKGFLFPLVQEN-CTLREAAIIGSILQKVSVPVLH 333

Query:   312 SSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQS 371
             S+ ALL+L E +  G TS FI++LL+KKY LPY+V+D++V +FMR+    R + V+ HQS
Sbjct:   334 SAAALLRLTEFDLSGATSVFIRILLDKKYALPYKVLDSLVFYFMRWKSLERPLAVLEHQS 393

Query:   372 LLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEK 420
             +L F QRYK ++  E KD L  +++ + H  + PEI REL +S +RGE+
Sbjct:   394 MLVFAQRYKFDITPEQKDALLEVVRLKGHYSIGPEIRRELLNSASRGEE 442

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=ISO

GO:0006364 "rRNA processing" evidence=ISO

GO:0030515 "snoRNA binding" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q20932	BYN1_CAEEL	No assigned EC number	0.4631	0.8410	0.8485	yes	no
O54825	BYST_MOUSE	No assigned EC number	0.4716	0.8344	0.8669	yes	no
Q80WL2	BYST_RAT	No assigned EC number	0.4763	0.8167	0.8486	yes	no
Q13895	BYST_HUMAN	No assigned EC number	0.4701	0.8520	0.8832	yes	no
Q5E9N0	BYST_BOVIN	No assigned EC number	0.4588	0.8675	0.9034	yes	no
P51406	BYS_DROME	No assigned EC number	0.4436	0.8300	0.8623	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	453
pfam05291	303	pfam05291, Bystin, Bystin	1e-166

>gnl|CDD|218540 pfam05291, Bystin, Bystin

 Score =  469 bits (1210), Expect = e-166
 Identities = 184/300 (61%), Positives = 236/300 (78%), Gaps = 6/300 (2%)

Query: 130 FLSKDAGPQVTLADLIIKKIKENDANIAS------GETRPLPKLDESFINLYKGVGEFLS 183
           F++KD G   TLAD+I++KI+E +A+         G   P  KLD   I +Y+ VGE LS
Sbjct: 1   FMNKDDGGTRTLADIIMEKIQEKEASGQGAGRDEEGNPSPEIKLDPKVIEVYEKVGELLS 60

Query: 184 KYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLV 243
           +Y +GK+PKAFK IP    WE +LYLT PE WTP+AM+ ATR+FSSNL  K+A+RFY+LV
Sbjct: 61  RYKSGKLPKAFKIIPKLSNWEDILYLTNPENWTPHAMYAATRLFSSNLKEKQAQRFYELV 120

Query: 244 LLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIE 303
           LLPR+R+DIR+NKKL+  LY ALKK+LYKPAAF KGILFPLC+SGTC LREA+IIGSV+ 
Sbjct: 121 LLPRVREDIRENKKLNVHLYNALKKALYKPAAFFKGILFPLCESGTCTLREAIIIGSVLA 180

Query: 304 KISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRV 363
           K+SIP+LHSS ALLKLAEM+Y G TS FI++LL+KKY LPYRVVDA+V HF+RF  + RV
Sbjct: 181 KVSIPVLHSSAALLKLAEMDYNGATSVFIRVLLDKKYALPYRVVDALVFHFLRFENEERV 240

Query: 364 MPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEKEGD 423
           +PV+WHQSLL F QRYKN++ ++ K+ L  LL+K+KH L++PEI REL +SR+RG K+ +
Sbjct: 241 LPVLWHQSLLTFAQRYKNDITEDQKEALLDLLRKKKHHLISPEIRRELLASRSRGVKDPE 300

Trophinin and tastin form a cell adhesion molecule complex that potentially mediates an initial attachment of the blastocyst to uterine epithelial cells at the time of implantation. Trophinin and tastin bind to an intermediary cytoplasmic protein called bystin. Bystin may be involved in implantation and trophoblast invasion because bystin is found with trophinin and tastin in the cells at human implantation sites and also in the intermediate trophoblasts at invasion front in the placenta from early pregnancy. This family also includes the yeast protein ENP1. ENP1 is an essential protein in Saccharomyces cerevisiae and is localised in the nucleus. It is thought that ENP1 plays a direct role in the early steps of rRNA processing as enp1 defective yeast cannot synthesise 20S pre-rRNA and hence 18S rRNA, which leads to reduced formation of 40S ribosomal subunits. Length = 303

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	453
KOG3871	449	consensus Cell adhesion complex protein bystin [Ex	100.0
PF05291	301	Bystin: Bystin; InterPro: IPR007955 Trophinin and	100.0
PF11510	263	FA_FANCE: Fanconi Anaemia group E protein FANCE; I	98.71
cd07439	254	FANCE_c-term Fanconi anemia complementation group	98.03

>KOG3871 consensus Cell adhesion complex protein bystin [Extracellular structures]

Probab=100.00  E-value=1.6e-158  Score=1180.92  Aligned_cols=427  Identities=55%  Similarity=0.854  Sum_probs=371.7

Q ss_pred             hhccCCCCCCCCCCCCCCcccccccc--chhhhhh--hcccccccCchhhHHHHHHHHHHHHHHhhhccCCcccccchhh
Q 012911            6 KRERFQNPQPFLPSNDDDKSVASSKK--RSKAAKH--HQKQDKMISSGISSKILKEAMIQQKEVLEESEEPNATKSAFVF   81 (453)
Q Consensus         6 kk~rh~pL~~qi~~~~~~~~~~~~~~--r~k~~~~--~~e~e~~vd~~~SkkIL~~Ar~Qq~E~~~e~~~~~~~~~~~~~   81 (453)
                      ++.+|.||.+||.   .++ ++++++  |+|.+++  ..++++|||+++|+|||++||+||.|+++|+.....+..++..
T Consensus        10 ~~~~~~pl~kdl~---a~~-va~~k~~~r~k~k~~~e~~e~d~~ida~~S~KIL~~Ak~Qq~E~~~Ee~~~~~~~s~~~~   85 (449)
T KOG3871|consen   10 RKQRHAPLLKDLA---AGQ-VAKKKKLARSKVKKHDEANEEDGFIDAKASRKILQLAKEQQLELAEEENAESSRNSAFEA   85 (449)
T ss_pred             chhccCchhhhhH---HHh-hhhhhhhhhhhhhhhhhhccccccccchhhHHHHHHHHHHHHHHhhhhcccccchhhhhh
Confidence            4557999999998   344 555554  5555444  3455689999999999999999999998887655444433321


Q ss_pred             hhHhhhh-ccCCCCcccccccCCCCcccccc-CCccccccChHHHHHHHHHcccCCCCCcChHHHHHHHHhhhhhhhc--
Q 012911           82 AEEEQSK-RRVEEDEDDIDDFGGFNETQSQF-GNYEQEEIDEDDERLLEAFLSKDAGPQVTLADLIIKKIKENDANIA--  157 (453)
Q Consensus        82 ~~~~~~~-~~~~dd~~~~dd~~~~~~~~~~~-~e~e~~eideeDe~~l~~Fm~~~~~~~~tLADiImeKi~eke~~~~--  157 (453)
                      .-+...- ++++.+++++||+++++.++++. ++++.+|||++|++.|++|++++++..+||+||||+||+||++...  
T Consensus        86 ~~~~~~~~ee~~i~~~~eddi~D~~~~~d~~~eed~~~Eide~d~~~f~r~l~k~a~~~~tL~diIm~ki~ekead~~~~  165 (449)
T KOG3871|consen   86 RFTTASYGEEDEIEEEDEDDIDDFEMEEDDKEEEDEIVEIDEEDAALFERFLKKSADFNYTLADIIMAKIREKEADVETE  165 (449)
T ss_pred             hccccccccccccccchhcccccccccccchhhhhhhhhcCcchHHHHHHHhccccchhccHHHHHHHHHHHHHhhHHhh
Confidence            1000010 11111222334444544333322 2345799999999999999999999999999999999999998732  


Q ss_pred             ----cCCCCCCCCCChHHHHHHHHHHHHHhhcccCCCCccccccCCCchHHHHHhhcCCCCCchhHHHHhHHHhhcCCCh
Q 012911          158 ----SGETRPLPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNA  233 (453)
Q Consensus       158 ----~~~~~~~~~l~pkVvevY~~vG~~Ls~YrSGKLPKaFKiiP~l~nWEeiL~lT~P~~WSp~A~y~aTriF~Snl~~  233 (453)
                          +.++.+.+.|||+|+++|++||.+||+||||||||||||||+|.|||+|||||+|+.|||||||||||||+|||++
T Consensus       166 ~~~~~~~e~~~~~ldpkV~e~Y~~Vg~~lskyrsGKlPKaFKiIp~l~nWediLylT~Pe~Ws~~amyqaTRiF~SnL~~  245 (449)
T KOG3871|consen  166 QSDPDENEFPMPALDPKVIEMYEGVGSVLSKYRSGKLPKAFKIIPSLRNWEDILYLTEPEEWSPAAMYQATRIFASNLKP  245 (449)
T ss_pred             hcccccccCCCCCCCHHHHHHHHHHHHHHHHhhcCCCchhhhcccccccHhHheeecCccccCHHHHHHHHHHHHhcCCH
Confidence                2234567899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhHHHHHhhhhhccccHHHHHHHHHhhcCchhhhhhhhcccccCCCcchhHHHHHHHHHhccCCCcccHH
Q 012911          234 KKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSS  313 (453)
Q Consensus       234 ~~aqrF~~~VLLprvredI~e~KkLn~hLy~ALkKalyKP~AFfkGil~PL~~sg~CTlrEA~IigSVl~K~SiPvlHsa  313 (453)
                      +|||||||+|||||||+||+++||||||||+|||||||||+|||||||||||+|||||||||+||||||+||||||||||
T Consensus       246 ~~~QrFynlvLLpRvRddi~e~kkLnyhLY~AlkKaLyKPsAffkG~l~PL~esgtCtlREAvI~gSvl~K~siPvlHSs  325 (449)
T KOG3871|consen  246 KMAQRFYNLVLLPRVRDDIREYKKLNYHLYQALKKALYKPSAFFKGILFPLVESGTCTLREAVIIGSVLAKVSIPVLHSS  325 (449)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHhhhhHHHHHHHHHHhcCcHHHhccchhhhccCCCchHHHHHHHHHHHhhCcchhHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccCCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHhhhhcCHHHHHHHHH
Q 012911          314 VALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRI  393 (453)
Q Consensus       314 aaL~kl~~~~~sg~~s~Flr~LLdKKYaLPyrviDalV~hFlrF~~~~~~lPVlWHQslL~FvqrYk~dls~eqk~~L~~  393 (453)
                      |||++||+|+|||+||+|||+||||||||||||||+||+|||||+++.|.|||+||||||+||||||+||+.|||++|++
T Consensus       326 aallrl~em~ysgatSvFir~lLdKKYalPYrvvD~~V~hFmrf~~d~R~lpVlwHqslLtf~QRYK~di~~eqkdaLle  405 (449)
T KOG3871|consen  326 AALLRLAEMDYSGATSVFIRILLDKKYALPYRVVDALVFHFMRFRTDERVLPVLWHQSLLTFAQRYKNDITQEQKDALLE  405 (449)
T ss_pred             HHHHHHHhcccCCcchHHHHHHhhhhccchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhhcCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCHHHHHHHhhcCCCCCCCCccccccccccccccccccccCCCCCCCCC
Q 012911          394 LLKKQKHKLVTPEIIRELDSSRNRGEKEGDLVSISYPMSVINKTIEEDRFDIPDVPME  451 (453)
Q Consensus       394 Ll~~~~H~~ItpEIrreL~~~~~R~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  451 (453)
                      |+|.|+|+.|||||||||+++.+||+++.+|               |++++.++|+|+
T Consensus       406 llr~~~H~~i~PEIrREL~~~~~r~~~~~~~---------------~~~~~~~~v~me  448 (449)
T KOG3871|consen  406 LLRLQGHYLIGPEIRRELLASASRDEEDPQM---------------EDRFADDDVEME  448 (449)
T ss_pred             HHHhcCCCcCCHHHHHHHHhccccCccccch---------------hhcccCCCcccC
Confidence            9999999999999999999999999976654               778888888875

>PF05291 Bystin: Bystin; InterPro: IPR007955 Trophinin and tastin form a cell adhesion molecule complex that potentially mediates an initial attachment of the blastocyst to uterine epithelial cells at the time of implantation

Probab=100.00  E-value=4e-134  Score=990.14  Aligned_cols=295  Identities=62%  Similarity=1.049  Sum_probs=285.1

Q ss_pred             HcccCCCCCcChHHHHHHHHhhhhhhhc----cCCCCCC-CCCChHHHHHHHHHHHHHhhcccCCCCccccccCCCchHH
Q 012911          130 FLSKDAGPQVTLADLIIKKIKENDANIA----SGETRPL-PKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWE  204 (453)
Q Consensus       130 Fm~~~~~~~~tLADiImeKi~eke~~~~----~~~~~~~-~~l~pkVvevY~~vG~~Ls~YrSGKLPKaFKiiP~l~nWE  204 (453)
                      ||++++++++||||+||+||+|++++..    ++++.+. ..+||||++||++||.+||+||||||||||||||+|+|||
T Consensus         1 fm~~~~~~~~~Lad~I~~Ki~e~e~~~~~~~~~~~~~~~~~~l~~kVvevY~~vG~~Ls~YrSGkLPKafKiiP~l~nWE   80 (301)
T PF05291_consen    1 FMNEEAGQRRTLADIIMEKIKEKEAEQQGQQSDEEGKPEPEELDPKVVEVYTKVGELLSRYRSGKLPKAFKIIPSLPNWE   80 (301)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHhHhhhccccCccCCCCCcccCCHHHHHHHHHHHHHHhhcCCCCCCcCeecccCchhHH
Confidence            8999999999999999999999999742    2223333 4899999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCCCchhHHHHhHHHhhcCCChHHHHHHHHHhhhHHHHHhhhhhccccHHHHHHHHHhhcCchhhhhhhhccc
Q 012911          205 QVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPL  284 (453)
Q Consensus       205 eiL~lT~P~~WSp~A~y~aTriF~Snl~~~~aqrF~~~VLLprvredI~e~KkLn~hLy~ALkKalyKP~AFfkGil~PL  284 (453)
                      +|||+|+|++|||||||+|||||+||||+++|||||++||||||||||++|||||||||+|||||+|||+||||||||||
T Consensus        81 eiL~lT~P~~WSp~A~~~aTRiF~SnL~~~~aqrF~~~VLLprvredI~~~KKLn~hly~ALkKalyKP~AffkGil~PL  160 (301)
T PF05291_consen   81 EILYLTRPEKWSPHAMYEATRIFASNLNEKMAQRFYNLVLLPRVREDIAENKKLNYHLYMALKKALYKPAAFFKGILLPL  160 (301)
T ss_pred             HHHHhCChhhccHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCcHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCcchhHHHHHHHHHhccCCCcccHHHHHHHHhcccCCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhccCCCc
Q 012911          285 CKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVM  364 (453)
Q Consensus       285 ~~sg~CTlrEA~IigSVl~K~SiPvlHsaaaL~kl~~~~~sg~~s~Flr~LLdKKYaLPyrviDalV~hFlrF~~~~~~l  364 (453)
                      |+|||||+|||+||||||+||||||+||||||++||+|+|+|++|+|||+||+|||||||||||+||+||+||.++.++|
T Consensus       161 ~~sg~CTlrEA~Ii~svl~k~sipvlhsaaaL~kl~~~~~~g~~s~flr~ll~KKYaLP~rviDalv~hFlrf~~~~~~l  240 (301)
T PF05291_consen  161 CESGTCTLREAVIIGSVLAKVSIPVLHSAAALLKLAEMEYSGANSIFLRVLLDKKYALPYRVIDALVFHFLRFRNDKRKL  240 (301)
T ss_pred             hcCCCccHHHHHHHHHHHHhcCCCchhHHHHHHHHHcCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHHhcccCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhCCCCCCCHHHHHHHhhcCCCCCCCCcc
Q 012911          365 PVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEKEGDL  424 (453)
Q Consensus       365 PVlWHQslL~FvqrYk~dls~eqk~~L~~Ll~~~~H~~ItpEIrreL~~~~~R~~~~~~~  424 (453)
                      ||+||||||+||||||+|||+|||++|++||++|+|++|||||||||.+|++||++.++|
T Consensus       241 PVlWHq~lL~F~qrYk~di~~eqk~~L~~ll~~~~H~~ItpEIrreL~~~~~r~~~~~~~  300 (301)
T PF05291_consen  241 PVLWHQSLLVFVQRYKNDITEEQKEALLELLRKQKHPQITPEIRRELLASRSRGVEIMDM  300 (301)
T ss_pred             cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCCHHHHHHHhcCCCCCCccCCC
Confidence            999999999999999999999999999999999999999999999999999999976654

Trophinin and tastin bind to an intermediary cytoplasmic protein called bystin. Bystin may be involved in implantation and trophoblast invasion because bystin is found with trophinin and tastin in the cells at human implantation sites and also in the intermediate trophoblasts at invasion front in the placenta from early pregnancy []. This family also includes the Saccharomyces cerevisiae protein ENP1. ENP1 is an essential protein in S. cerevisiae and is localised in the nucleus []. It is thought that ENP1 plays a direct role in the early steps of rRNA processing as enp1 defective S. cerevisiae cannot synthesise 20S pre-rRNA and hence 18S rRNA, which leads to reduced formation of 40S ribosomal subunits [].

>PF11510 FA_FANCE: Fanconi Anaemia group E protein FANCE; InterPro: IPR021025 Fanconi Anaemia (FA) is a cancer predisposition disorder characterised by chromosome fragility and hypersensitivity to genotoxic agents that suggest defects in the molecular mechanisms of DNA damage signalling and repair

Probab=98.71  E-value=7e-07  Score=88.61  Aligned_cols=229  Identities=16%  Similarity=0.224  Sum_probs=153.4

Q ss_pred             CCChHHHHHHHHHHHHHhhccc------CCCCccccccCCCc--hHHHHHhhcCCCCCchhHHHHhHHHh---hcCCChH
Q 012911          166 KLDESFINLYKGVGEFLSKYTA------GKMPKAFKHIPSTQ--MWEQVLYLTEPEKWTPNAMFQATRIF---SSNLNAK  234 (453)
Q Consensus       166 ~l~pkVvevY~~vG~~Ls~YrS------GKLPKaFKiiP~l~--nWEeiL~lT~P~~WSp~A~y~aTriF---~Snl~~~  234 (453)
                      +||.-+....-++-++|..-..      |..|..++++=..+  ..|-+-..-+=.+||..++++..+.+   ..+++-.
T Consensus         7 ~lp~~~~~~~~~lk~ll~~~~e~~~~~~~~~~~~lq~L~~csp~q~e~lc~~L~l~~lsd~~l~~lc~~ll~Ls~dls~~   86 (263)
T PF11510_consen    7 ELPKHIQDQVPRLKELLETESEGLEGLEDAPPSELQFLNECSPSQVEMLCSQLQLPQLSDDGLLQLCSSLLALSPDLSHS   86 (263)
T ss_dssp             ---HHHHHHHHHHHHHHHHHH-----------HHHHGGGG--HHHHHHHHHHHTGGG--HHHHHHHHHHHHH-SS---HH
T ss_pred             hCcHHHHHHHHHHHHHHHHhhhhcccccCCChHHHHHHHhCCHHHHHHHHHHhCcCCCCHHHHHHHHHHHHccCcccchh
Confidence            4555555555555555554433      44667777774432  44444444555689999999999977   4577888


Q ss_pred             HHHHHHHHhhhHHHHHhhhhhccccHHHHHHHHHhhcC-chhhhhhhhcccccCCCcchhHHHHHHHHHhccCCCcccHH
Q 012911          235 KAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYK-PAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSS  313 (453)
Q Consensus       235 ~aqrF~~~VLLprvredI~e~KkLn~hLy~ALkKalyK-P~AFfkGil~PL~~sg~CTlrEA~IigSVl~K~SiPvlHsa  313 (453)
                      .|--|....+||+++.-   +..-..+|..|+.-..-+ |.++..|+++||...+.-..-.+-+|..++++-+++..|-.
T Consensus        87 ~a~~l~~sl~LpkilsL---~~~ASR~L~sal~~f~k~~p~~~~~all~PlL~~~~~g~~Q~eLl~rlvk~~~l~p~~~~  163 (263)
T PF11510_consen   87 NATVLLRSLFLPKILSL---EEPASRLLVSALTSFCKKYPRPVCEALLVPLLQAPGLGPPQCELLCRLVKKECLEPDHRL  163 (263)
T ss_dssp             HHHHHHHHHHHHHHHH----SS---HHHHHHHHHHHHHSHHHHHHHHHHHHHHSTT--HHHHHHHHHHHH-TTS-HHHHH
T ss_pred             hHHHHHHHHHHHHHHhc---CCCccHHHHHHHHHHHHhCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccCCHHHHH
Confidence            89999999999999987   557778888888766655 99999999999887665667788899999988899999999


Q ss_pred             HHHHHHhcccCCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHhhhhcCHHHHHHHHH
Q 012911          314 VALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRI  393 (453)
Q Consensus       314 aaL~kl~~~~~sg~~s~Flr~LLdKKYaLPyrviDalV~hFlrF~~~~~~lPVlWHQslL~FvqrYk~dls~eqk~~L~~  393 (453)
                      ..+-.+.+.+|+-.+..++..+|++|-.|+-..++-++.-+..-...- .=-+.+-+-+|+|+..|...|++.||..|-.
T Consensus       164 l~l~~~L~~~W~E~~~~Vlq~lL~~k~~l~~~~~~~l~~~L~~~a~~~-skSlkFakLlLtvltKy~~~it~~~~~~L~~  242 (263)
T PF11510_consen  164 LLLRQILELVWNEETFLVLQSLLERKVELSQELFSLLVELLCEQAPQF-SKSLKFAKLLLTVLTKYQSQITEAHKLSLAE  242 (263)
T ss_dssp             HHHHHHHHS---HHHHHHHHHHHTT-----HHHHHHHHHHHH---------SHHHHHHHHHHHHHTGGG--HHHHHHHHH
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhh-hcchHHHHHHHHHHHHcchhccHHHHHHHHH
Confidence            888899999999999999999999999999999998988775432221 1256799999999999999999999999988


Q ss_pred             HHHhC
Q 012911          394 LLKKQ  398 (453)
Q Consensus       394 Ll~~~  398 (453)
                      .+...
T Consensus       243 ~l~~n  247 (263)
T PF11510_consen  243 ALELN  247 (263)
T ss_dssp             HH-SS
T ss_pred             HHHhc
Confidence            87543

In response to DNA damage, the FA core complex monoubiquitinates the FANCD2 protein. This ubiquitination targets FANCD2 to nuclear foci where it interacts with a variety of DNA repair proteins. The FA group E protein (FANCE) has an important role in DNA repair, functioning as the FANCD2-binding protein in the FA core complex []. This entry represents the C-terminal domain of FANCE, which consists predominantly of helices and does not contain any beta-strands. This domain folds in a continuous right-handed solenoidal pattern from its N terminus to its C terminus. ; PDB: 2ILR_A.

>cd07439 FANCE_c-term Fanconi anemia complementation group E protein, C-terminal domain

Probab=98.03  E-value=0.00035  Score=69.31  Aligned_cols=226  Identities=15%  Similarity=0.151  Sum_probs=172.9

Q ss_pred             CCChHHHHHHHHHHHHHhhcccCCCCccccccCCCchHH-----HHHhhcCCCCCchhHHHHhHHHhhcCC---ChHHHH
Q 012911          166 KLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWE-----QVLYLTEPEKWTPNAMFQATRIFSSNL---NAKKAE  237 (453)
Q Consensus       166 ~l~pkVvevY~~vG~~Ls~YrSGKLPKaFKiiP~l~nWE-----eiL~lT~P~~WSp~A~y~aTriF~Snl---~~~~aq  237 (453)
                      .+++.+.++-.++-++|..|..+. |-++-++=.+.-|.     -+...-+.++=+...+....+.|.+..   +...+-
T Consensus         2 e~~~~i~~~~~~ikeLl~~~~~~~-~~~~~~L~~l~~~~~~~~~~lc~~L~~~~~~d~~~~~Lcs~lL~~~~~~s~~~~~   80 (254)
T cd07439           2 ELPSVIQEVLEDIKELLLQEGEWL-PSSPDELQFLHSCSPSQMEVLCSQLQLSSLSDQTLLLLCSSLLPLSPDLSLANAV   80 (254)
T ss_pred             cchHHHHHHHHHHHHHHHhhccCc-CChHHHHHHHccCCHHHHHHHHHHhccCCcccHHHHHHHHHHhccCCccCcccHH
Confidence            366777788888888888887765 55544444444442     233334444455556666677777763   777789


Q ss_pred             HHHHHhhhHHHHHhhhhhccccHHHHHHHHHhhc-CchhhhhhhhcccccCCCcchhHHHHHHHHHhccCCCcccHHHHH
Q 012911          238 RFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLY-KPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVAL  316 (453)
Q Consensus       238 rF~~~VLLprvredI~e~KkLn~hLy~ALkKaly-KP~AFfkGil~PL~~sg~CTlrEA~IigSVl~K~SiPvlHsaaaL  316 (453)
                      .|...++||+++.-=   ..-..+|+-|+.--.- .|.+|..++++||.+.+.-+.-.+-+|..++..+- ++.|....+
T Consensus        81 ~~~~~l~LpKl~~l~---~~aSR~L~~al~~f~~r~~~~~ceall~PLl~~~~~~~~q~ell~rlike~~-~~~~~~l~~  156 (254)
T cd07439          81 VFTRHLLLPKLLSLN---ESASRALVAALASFAKRYPRPFCEALLRPLLQCPHPGPFQAELLCRLVKECF-EPDAVLLLL  156 (254)
T ss_pred             HHHHHHHhhhhhccC---cchhHHHHHHHHHHHHhCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHhccc-cHHHHHHHH
Confidence            999999999998632   4445788887765544 49999999999999876556777778999998887 778888888


Q ss_pred             HHHhccc---CCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHhhhhcCHHHHHHHHH
Q 012911          317 LKLAEME---YCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRI  393 (453)
Q Consensus       317 ~kl~~~~---~sg~~s~Flr~LLdKKYaLPyrviDalV~hFlrF~~~~~~lPVlWHQslL~FvqrYk~dls~eqk~~L~~  393 (453)
                      .++-.-+   |+-.+-..+..+|+++-.|.-..++.+|..+..-...-.. -+.+-+-+|.|+..|...++..++..|..
T Consensus       157 ~q~L~~~~~~W~E~~~~v~q~lL~~~~~lte~~~~~Lv~~L~~~a~~~sk-SlkFa~lll~~itky~~~~~~~~~~~L~~  235 (254)
T cd07439         157 HQILISPNLVWTEETFTVIQALLNRKPPLSEESFSELVSKLQEQAEAFSK-SLKFAKLLLAVITKYGPQMSPAHKQSLSE  235 (254)
T ss_pred             HHHHccccccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHccHhhcHHHHHHHHH
Confidence            8876665   9999999999999999999999999999988665443221 45788999999999999999999999998


Q ss_pred             HHHh
Q 012911          394 LLKK  397 (453)
Q Consensus       394 Ll~~  397 (453)
                      .+..
T Consensus       236 ~~~~  239 (254)
T cd07439         236 ALER  239 (254)
T ss_pred             HHHh
Confidence            8753

Fanconi Anemia (FA) is an autosomal recessive disorder associated with increased susceptibility to various cancers, bone marrow failure, cardiac, renal, and limb malformations, and other characteristics. Cells are highly sensitive to DNA damaging agents. A multi-subunit protein complex, the FA core complex, is responsible for ubiquitination of the protein FANCD2 in response to DNA damage. This monoubiquitination results in a downstream effect on homology-directed DNA repair. FANCE is part of the FA core complex and its C-terminal domain, which is modeled here, has been shown to directly interact with FANCD2. The domain contains a five-fold repeat of a structural unit similar to ARM and HEAT repeats. FANCE appears conserved in metazoa and in plants.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	453
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 2e-09
 Identities = 70/476 (14%), Positives = 149/476 (31%), Gaps = 106/476 (22%)

Query: 38  HHQKQDKMISSGISSKILKEAMIQQKEVLEESEEPNATKSAFVFAEEEQSKRRV--EEDE 95
           HH   D             E   Q K++L   E+  A    F   + +   + +  +E+ 
Sbjct: 3   HHHHMDFETG---------EHQYQYKDILSVFED--AFVDNFDCKDVQDMPKSILSKEEI 51

Query: 96  DDI----DD-------FGGFNETQSQFGNYEQ--EEIDEDD-ERLLEAFLSKDAGPQVTL 141
           D I    D        F      Q +    ++  EE+   + + L+    ++   P +  
Sbjct: 52  DHIIMSKDAVSGTLRLFWTLLSKQEEM--VQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109

Query: 142 ADLIIKKIK-ENDANIASGE--TRP---------LPKL-DESFINLY--KGVGEFLSKYT 186
              I ++ +  ND  + +    +R          L +L     + +    G G    K  
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG----KTW 165

Query: 187 -AGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLL 245
            A  +  ++K     +M  ++ +L      +P  + +  +     ++     R      +
Sbjct: 166 VALDVCLSYK--VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 246 PRIRDDIRKNKKLHFALYQALKKSL------YKP---AAFNKGILFPLCKSGTCNL---R 293
                 I+   +      +  +  L             AFN       CK     L   R
Sbjct: 224 KLRIHSIQAELRRLLKS-KPYENCLLVLLNVQNAKAWNAFNLS-----CKI----LLTTR 273

Query: 294 EAVIIGSVIEKIS--IPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVD--- 348
              +   +    +  I + H S+ L    E++     S  +K L  +   LP  V+    
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTP-DEVK-----SLLLKYLDCRPQDLPREVLTTNP 327

Query: 349 ---AIVAHFMRFLEDTRVMPVIW----HQSLLAFVQRYKNELQKEDKDDLRILLKK---- 397
              +I+A  +R           W    H +        ++ L   +  + R +  +    
Sbjct: 328 RRLSIIAESIR------DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381

Query: 398 QKHKLVTPEIIREL--DSSRNRGEKEGDLVSISYPMSVINKTIEEDRFDIPDVPME 451
                +   ++  +  D  +        +V+  +  S++ K  +E    IP + +E
Sbjct: 382 PPSAHIPTILLSLIWFDVIK---SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 1e-07
 Identities = 83/555 (14%), Positives = 154/555 (27%), Gaps = 204/555 (36%)

Query: 5   QKRERFQN-PQPFLPSNDDDKSVASSKKRSKAAKHHQKQDK--------MISSGISS--- 52
           ++R+R  N  Q F   N     V+  +   K  +   +           ++ SG +    
Sbjct: 114 EQRDRLYNDNQVFAKYN-----VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168

Query: 53  ------KILK-----------------EAMIQQKEVLEESEEPNATKSAFVFAEEEQSKR 89
                 K+                   E +++  + L    +PN T      +  + S  
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT------SRSDHSSN 222

Query: 90  ---RVEEDEDDIDDFGGFNETQSQFGNYEQEEIDEDD---ERLLEAFLSKDAGPQVTLAD 143
              R+   + ++               YE   +   +    +   AF   +   ++    
Sbjct: 223 IKLRIHSIQAELRRL--LKSKP-----YENCLLVLLNVQNAKAWNAF---NLSCKI---- 268

Query: 144 LIIKKIKENDANIASGETRPLPKLDESFINLYKGVG-EFLSKYT---AGKMPK-AFKHIP 198
           L+  + K+   +  S  T     LD   + L        L KY       +P+      P
Sbjct: 269 LLTTRFKQV-TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327

Query: 199 ------------STQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKA----ERFYKL 242
                           W+   ++   +          T I  S+LN  +     + F +L
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKL---------TTIIESSLNVLEPAEYRKMFDRL 378

Query: 243 VLLPR----------------IRDD-------------IRKNKK-----LHFALYQALKK 268
            + P                 I+ D             + K  K     +  ++Y  LK 
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-SIYLELKV 437

Query: 269 SLYKPAAFNKGIL----FPLCKSGTCNLREAVIIGSVIEKISIPML----------HSSV 314
            L    A ++ I+     P                   + +  P L          H   
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDS--------------DDLIPPYLDQYFYSHIGHH--- 480

Query: 315 ALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDT-RVMPVIWHQS-- 371
               L  +E+    + F  + L+                  RFLE   R     W+ S  
Sbjct: 481 ----LKNIEHPERMTLFRMVFLD-----------------FRFLEQKIRHDSTAWNASGS 519

Query: 372 ---LLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPE--IIRELDSSRNRGEKEGDLVS 426
               L  ++ YK  +   D    R L+      L   E  +I           K  DL+ 
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYER-LVNAILDFLPKIEENLIC---------SKYTDLLR 569

Query: 427 ISYPMSVINKTIEED 441
           I+  +   ++ I E+
Sbjct: 570 IA--LMAEDEAIFEE 582

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	453
2ilr_A	264	Protein FACE, fanconi anemia group E protein; anti	98.59

>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}

Probab=98.59  E-value=2.7e-06  Score=83.16  Aligned_cols=180  Identities=12%  Similarity=0.167  Sum_probs=153.2

Q ss_pred             CCchhHHHHhHHHhhc---CCChHHHHHHHHHhhhHHHHHhhhhhccccHHHHHHHHHhhcC-chhhhhhhhcccccCCC
Q 012911          214 KWTPNAMFQATRIFSS---NLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYK-PAAFNKGILFPLCKSGT  289 (453)
Q Consensus       214 ~WSp~A~y~aTriF~S---nl~~~~aqrF~~~VLLprvredI~e~KkLn~hLy~ALkKalyK-P~AFfkGil~PL~~sg~  289 (453)
                      +-|..++++....+.|   -++-..|--|....+||+++.-   +..-.-+|..|+.--.-| |.||..|+++||+..+.
T Consensus        63 ~lsd~~l~~lc~~ll~ls~dlS~~~a~v~~~~l~LPkil~L---~~~ASR~L~sal~~f~k~~p~a~~~all~PLL~~~~  139 (264)
T 2ilr_A           63 QLSDLGLLRLCTWLLALSPDLSLSNATVLTRSLFLGRILSL---TSSASRLLTTALTSFAAKYTYPVCSALLDPVLQAPG  139 (264)
T ss_dssp             GCCHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHHHHHC---SSCCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHSTT
T ss_pred             cCCHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHhc---cCcchhHHHHHHHHHHHhCcHHHHHHHHHHHHcCCC
Confidence            6788899998886666   4667889999999999999988   677788888888766544 99999999999998776


Q ss_pred             cchhHHHHHHHHHhccCCCcccHHHHHHHHhcccCCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhccCCCcchHHH
Q 012911          290 CNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWH  369 (453)
Q Consensus       290 CTlrEA~IigSVl~K~SiPvlHsaaaL~kl~~~~~sg~~s~Flr~LLdKKYaLPyrviDalV~hFlrF~~~~~~lPVlWH  369 (453)
                      -..-.+-+|..+|.--++++.|.+..+-.+-+.+|+-.+...+..+|++|-.|.-..++.+|..+..-...-.. -..+-
T Consensus       140 ~g~~Q~eLi~rlik~e~l~p~~~~lll~~iL~l~WtE~~~~Vlq~lL~~k~~L~~~~i~~Lv~~L~~~a~~~sk-SlkFa  218 (264)
T 2ilr_A          140 TGPAQTELLCCLVKMESLEPDAQVLMLGQILELPWKEETFLVLQSLLERQVEMTPEKFSVLMEKLCKKGLAATT-SMAYA  218 (264)
T ss_dssp             CCHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHC-----CC-SHHHH
T ss_pred             CCHHHHHHHHHHHHhccCCHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhHHhhc-ccHHH
Confidence            67788889999998677999999999999999999999999999999999999999999999988754433222 46799


Q ss_pred             HHHHHHHHHhhhhcCHHHHHHHHHHHHh
Q 012911          370 QSLLAFVQRYKNELQKEDKDDLRILLKK  397 (453)
Q Consensus       370 QslL~FvqrYk~dls~eqk~~L~~Ll~~  397 (453)
                      +-+|+|+..|...|++.|+..|...+..
T Consensus       219 kLll~~itky~~~i~~~~~~~L~~~l~~  246 (264)
T 2ilr_A          219 KLMLTVMTKYQANITETQRLGLAMALEP  246 (264)
T ss_dssp             HHHHHHHHHTGGGCCHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHhHHhcCHHHHHHHHHHHHh
Confidence            9999999999999999999888888743

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00