Citrus Sinensis ID: 012917

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450---
Protein Sequence
MSKRTHTTEVGSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGSSMASSPYVPLEVFLLNGDSGQLSVLNRSLS
Secondary Structure (PSIPRED)
cccccccEEEEEEEcccccccccccccccccccEEEEcccHHHHHHHHcccEEEEEEEccccccEEEEEEEccccccEEEEEEEEEEcccEEEEEEccccEEEEEEccccEEHHHHcccccEEEEEEEEccccccccccccEEEEEEccEEEEEEcHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEcccccccHHHccccccEEEEEEccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEcccccEEEEEccccEEEEEEccccccEEEEEEEEEccccccccccccccccccEEEEEEEcccccEEEEEEcccccEEEEEEEccccEEEcccccccccccccccccEEEEEEEcccccEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEHHHHHHHcccccccccccHHHHHHHcHHHHHHHccEEEEEEEcccccccEEEEEEEccccccccEEEEEEEcccccEEEEEEccccEEEEEEccHHHHHHHHcccccEEEEEEEcccccccccccccEEEEEEccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEcccccccEEEEEEEccccccHHHHHHccccEEEEEEccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEccccccccEEEEEcccccEEEEEccccEEEEEEHHHcEEEEEEccccccEEEEEEEcccccccccccccccccccEEEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEccccccccccccccccEEEEEEccccccEEEEEEEcc
Coil and Loop (DISEMBL)
mskrthttevgsiactdlsdlgagkegwlvndpnllcALDMHTIALANRYQTVIINwadpeglvakirpelspiaSEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLvhrqlihpgrilklrvrgsrrdltqdtaeeevCVVMpgvlarfdgSEIQKMLQRWFqdsnsnfwdqkpkqrdsedLENSYerlphqlwnvskygpcadaaitglmppplmevqssqRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWrseqspkksepkpqsfaraspltclkdhprkgerltlspsgslAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKdaatssayyapvksdyclclaihaprkGIIEVWqmrtgprlltiqcakgskilqptyrfgssmasspyvpleVFLLNGDSGQLSVLNRSLS
Flexible Loop (DISEMBL)
mskrthttevgsiactdlsdlgaGKEGWLVNDPNLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLvhrqlihpgrilklrvrgsrrdltqdtaeeevcvvMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAilskvvpatfstiSSLSKMIWRSEqspkksepkpqsfaraspltclkdhprkgerltlspsgsLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGSSMASSPYVPLEVFLlngdsgqlsvlnrsls
Low Complexity Region (SEG)
MSKRTHTTEVGSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGSSMASSPYVPLEVFLLNGDSGQLSVLNRSLS
Disordered region (IsUnstruct)
**********GSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQD************************LPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIW******************************************LAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGSSMASSPYVPLEVFLLNG*************
Disordered Region (DISOPRED)
*********VGSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRV*************EEVCVVMPGVLARFDGSEIQKMLQRWFQDSN*******************YERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSL***************************TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFME**********************LCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGSSMASSPYVPLEVFLLNGDSGQLSVLNRSL*
Disordered Region (DISEMBL)
**********GSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWD*************SYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMI*******************ASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGSSMASSPYVPLEVFLLNGDSGQLSVLNRSLS
Disordered Region (DISPRO)
****THTTEVGSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRS*************FARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVN************VKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGSSMASSPYVPLEVFLLNGDSGQLSVLNRSLS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKRTHTTEVGSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGSSMASSPYVPLEVFLLNGDSGQLSVLNRSLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	453	2.2.26 [Sep-21-2011]
Q9H2M9	1393	Rab3 GTPase-activating pr	yes	no	0.759	0.246	0.266	3e-25
Q5U1Z0	1386	Rab3 GTPase-activating pr	yes	no	0.695	0.227	0.276	1e-24
Q8BMG7	1366	Rab3 GTPase-activating pr	yes	no	0.701	0.232	0.264	2e-24
Q9VKB9	1341	Rab3 GTPase-activating pr	yes	no	0.677	0.228	0.239	1e-16
Q22670	1307	Rab3 GTPase-activating pr	yes	no	0.187	0.065	0.291	4e-05

>sp|Q9H2M9|RBGPR_HUMAN Rab3 GTPase-activating protein non-catalytic subunit OS=Homo sapiens GN=RAB3GAP2 PE=1 SV=1

 Score =  116 bits (291), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 179/394 (45%), Gaps = 50/394 (12%)

Query: 93  LAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSR--RDLTQDTAEEEVCVVMPGV 150
           + VG + GY   Y   G L+  QL++   +L+L+ R     R        EE+ ++ P  
Sbjct: 156 IVVGFTSGYVRFYTENGVLLLAQLLNEDPVLQLKCRTYEIPRHPGVTEQNEELSILYPAA 215

Query: 151 LARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADA 210
           +   DG  + + L+           +Q  K   S +       L ++ W +       D 
Sbjct: 216 IVTIDGFSLFQSLRA--------CRNQVAKAAASGNENIQPPPLAYKKWGLQDIDTIIDH 267

Query: 211 AITGLM---PPPLMEVQSSQRYFCA------------VTIGEDSVISAFRLSEDRSRSLV 255
           A  G+M   P   M+  S+   F A            +T+G +     F   E  ++ L+
Sbjct: 268 ASVGIMTLSPFDQMKTASNIGGFNAAIKNSPPAMSQYITVGSNPFTGFFYALEGSTQPLL 327

Query: 256 G----AILSKVVPATFSTISSLSKMIWRS---EQSPKKSEPKPQSFARASPLTC---LKD 305
                A+ SK+  A F+  S    + W+S   E++ +K +PK +    A+PL     L D
Sbjct: 328 SHVALAVASKLTSALFNAASGW--LGWKSKHEEEAVQKQKPKVEP---ATPLAVRFGLPD 382

Query: 306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVN-KDA 364
             R GE + LSP  +LAA+TD  GR++LLD    + +R+WKGYRDA   +++ + +  + 
Sbjct: 383 SRRHGESICLSPCNTLAAVTDDFGRVILLDVARGIAIRMWKGYRDAQIGWIQTVEDLHER 442

Query: 365 ATSSAYYAPVK-----SDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTY 419
               A ++P       S     L I+APR+GI+EVW  + GPR+      K  ++L P Y
Sbjct: 443 VPEKADFSPFGNSQGPSRVAQFLVIYAPRRGILEVWSTQQGPRVGAFNVGKHCRLLYPGY 502

Query: 420 RFG--SSMASSPYVP--LEVFLLNGDSGQLSVLN 449
           +    +++ S  + P   ++ L++  SG +  +N
Sbjct: 503 KIMGLNNVTSQSWQPQTYQICLVDPVSGSVKTVN 536

Regulatory subunit of a GTPase activating protein that has specificity for Rab3 subfamily (RAB3A, RAB3B, RAB3C and RAB3D). Rab3 proteins are involved in regulated exocytosis of neurotransmitters and hormones. Rab3 GTPase-activating complex specifically converts active Rab3-GTP to the inactive form Rab3-GDP. Required for normal eye and brain development. May participate in neurodevelopmental processes such as proliferation, migration and differentiation before synapse formation, and non-synaptic vesicular release of neurotransmitters.
Homo sapiens (taxid: 9606)

>sp|Q5U1Z0|RBGPR_RAT Rab3 GTPase-activating protein non-catalytic subunit OS=Rattus norvegicus GN=Rab3gap2 PE=1 SV=2

 Score =  114 bits (286), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 164/362 (45%), Gaps = 47/362 (12%)

Query: 93  LAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSR--RDLTQDTAEEEVCVVMPGV 150
           + VG + GY   Y  +G L+  QL++  R+L+L+ R     R        EE+ ++ P  
Sbjct: 155 IVVGFTSGYVRFYT-EGVLLLAQLLNEDRVLQLKCRTYEIPRHPGVTEQNEELSILYPAA 213

Query: 151 LARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADA 210
           +   DG  + + L+           +Q  K   S +       L ++ W +       D 
Sbjct: 214 IVTIDGFSLFQSLRA--------CRNQVAKAAASGNENIQPPPLAYKKWGLQDIDTIIDH 265

Query: 211 AITGLM---PPPLMEVQSSQRYFCA------------VTIGEDSVISAFRLSEDRSRSLV 255
           A  G+M   P   M+  S+   F A            +T+G       F   E  ++ L+
Sbjct: 266 ASIGIMTLSPFDQMKTASNIGGFNAAIKNSPPAMSQYITVGSSPFTGFFYALEGSTQPLL 325

Query: 256 G----AILSKVVPATFSTISSLSKMIWRS---EQSPKKSEPKPQSFARASPLTC---LKD 305
                A+ SK+  A FS  S    + W+S   E++ +K +PK +    A+PL     L D
Sbjct: 326 SHVALAVASKLTSALFSAASGW--LGWKSKHEEETVQKQKPKMEP---ATPLAVRFGLPD 380

Query: 306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVN-KDA 364
             R GE + LSP  +LAA+TD  GR++LLD    + +R+WKGYRDA   +++++ +  + 
Sbjct: 381 SRRHGESICLSPCNTLAAVTDDFGRVILLDVARGIAIRMWKGYRDAQIGWIQIVEDLHER 440

Query: 365 ATSSAYYAPVK-----SDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTY 419
                 ++P       S     L I+APR+GI+EVW  + GPR+      K  ++L P Y
Sbjct: 441 VPEKGDFSPFGNTQGPSRVAQFLVIYAPRRGILEVWSTQQGPRVGAFNVGKHCRLLYPGY 500

Query: 420 RF 421
           + 
Sbjct: 501 KI 502

Regulatory subunit of a GTPase activating protein that has specificity for Rab3 subfamily (RAB3A, RAB3B, RAB3C and RAB3D). Rab3 proteins are involved in regulated exocytosis of neurotransmitters and hormones. Rab3 GTPase-activating complex specifically converts active Rab3-GTP to the inactive form Rab3-GDP. Required for normal eye and brain development. May participate in neurodevelopmental processes such as proliferation, migration and differentiation before synapse formation, and non-synaptic vesicular release of neurotransmitters.

Rattus norvegicus (taxid: 10116)

>sp|Q8BMG7|RBGPR_MOUSE Rab3 GTPase-activating protein non-catalytic subunit OS=Mus musculus GN=Rab3gap2 PE=1 SV=2

 Score =  114 bits (284), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 158/359 (44%), Gaps = 41/359 (11%)

Query: 93  LAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSR--RDLTQDTAEEEVCVVMPGV 150
           + VG + GY   Y  +G L+  QL++  ++L+L+ R     R        EE+ ++ P  
Sbjct: 155 IVVGFTSGYVRFYT-EGVLLLAQLLNEDKVLQLKCRTYEIPRHPGVTEQNEELSILYPAA 213

Query: 151 LARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADA 210
           +   DG  + + L+           +Q  K   S +       L ++ W +       D 
Sbjct: 214 IVTIDGFSLFQSLRA--------CRNQVAKAAASGNENIQPPPLAYKKWGLQDIDTIIDH 265

Query: 211 AITGLM---PPPLMEVQSSQRYFCA------------VTIGEDSVISAFRLSEDRSRSLV 255
           A  G+M   P   M+  S+   F A            +T+G       F   E  ++ L+
Sbjct: 266 ASVGIMTLSPFDQMKTASNIGGFNAAIKNSPPAMSQYITVGSSPFTGFFYALEGSTQPLL 325

Query: 256 G----AILSKVVPATFSTISSLSKMIWRSEQSPKKSEPKPQSFARASPLTC---LKDHPR 308
                A+ SK+  A FS  S    + W+S+      + +      A+PL     L D  R
Sbjct: 326 SHVALAVASKLTSALFSAASGW--LGWKSKHEEDTVQKQKPKMEPATPLAVRFGLPDSRR 383

Query: 309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVN-KDAATS 367
            GE + LSP  +LAA+TD  GR++LLD    + +R+WKGYRDA   +++++ +  +    
Sbjct: 384 HGESICLSPCNTLAAVTDDFGRVILLDVARGIAIRMWKGYRDAQVGWIQIVEDLHERVPE 443

Query: 368 SAYYAPVK-----SDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRF 421
              ++P       S     L I+APR+GI+EVW  + GPR+      K  ++L P Y+ 
Sbjct: 444 KGGFSPFGNTQGPSRVAQFLVIYAPRRGILEVWNTQQGPRVGAFNVGKHCRLLYPGYKI 502

Regulatory subunit of a GTPase activating protein that has specificity for Rab3 subfamily (RAB3A, RAB3B, RAB3C and RAB3D). Rab3 proteins are involved in regulated exocytosis of neurotransmitters and hormones. Rab3 GTPase-activating complex specifically converts active Rab3-GTP to the inactive form Rab3-GDP. Required for normal eye and brain development. May participate in neurodevelopmental processes such as proliferation, migration and differentiation before synapse formation, and non-synaptic vesicular release of neurotransmitters.

Mus musculus (taxid: 10090)

>sp|Q9VKB9|RBGPR_DROME Rab3 GTPase-activating protein regulatory subunit OS=Drosophila melanogaster GN=rab3-GAP PE=1 SV=2

 Score = 88.6 bits (218), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 152/359 (42%), Gaps = 52/359 (14%)

Query: 81  AIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAE 140
           AIEW        +AVG   G    Y   G  +  Q      ++ ++++ + R      A+
Sbjct: 100 AIEW------TCVAVGLCSGMVTFYTDSGVKLFSQCCQEDPVIGVKLQSAPR---HSEAD 150

Query: 141 EEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSY---ERLPHQ 197
             + ++ P  L    G +I   L     +           QR + +  +SY   + +P Q
Sbjct: 151 SLLYIIYPRCLCFIQGQDILPTLNNCRHNV----------QRGALE-RSSYPTADVVPFQ 199

Query: 198 LWNV--SKYGPCADAAITGLMPPPLMEVQSSQR----YFCAV-----------TIGEDSV 240
            +     +     DAAI+    PP  +    Q     YF  V             G +  
Sbjct: 200 KYKFKQEREAVINDAAISTTQRPPTYDYIVQQTIGLGYFAKVHATPPRSSQVLAAGAEPY 259

Query: 241 ISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRSEQ---SPKKSE-PKPQSFAR 296
           +  F+  E      +G +   V+   +  +  L  +  R+ +   SP++S  P P   A 
Sbjct: 260 LGFFQAEEGYKTMSLGEVAKDVIGIAYKNL--LGGIFRRAPEPLPSPEESPLPVPTKEAP 317

Query: 297 ASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFM 356
                 L D  R G  L+++P G LA +TD+L R++L+DT   +++R+WKGYRDA C F+
Sbjct: 318 MRIRCRLYDGKRDGLTLSVAPGGRLAVVTDNLDRVMLVDTHQAIILRVWKGYRDAQCAFV 377

Query: 357 EMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKIL 415
            +   K+ +         K+   L L I+APR G +++W ++ GP++     +K  +++
Sbjct: 378 PV---KEKSVRGIKTHKRKA---LFLVIYAPRMGCLDIWALQNGPKVAAFNVSKSGQLM 430

Probable regulatory subunit of a GTPase activating protein that has specificity for Rab3 subfamily. Rab3 proteins are involved in regulated exocytosis of neurotransmitters and hormones. Rab3 GTPase-activating complex specifically converts active Rab3-GTP to the inactive form Rab3-GDP.

Drosophila melanogaster (taxid: 7227)

>sp|Q22670|RBGPR_CAEEL Rab3 GTPase-activating protein regulatory subunit OS=Caenorhabditis elegans GN=rbg-2 PE=3 SV=1

 Score = 50.1 bits (118), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 18/103 (17%)

Query: 308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATS 367
           R  + ++ SP     A+TD + R+L++D  +  VV ++KGYRDAS  ++ +  +   A  
Sbjct: 374 RVAQNVSRSPDCQYVAVTDRMARVLVIDIASRQVVLIFKGYRDASISWVSVTEDDRVAQ- 432

Query: 368 SAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAK 410
                         L I APR+ ++EVW +    R+    CA+
Sbjct: 433 -------------FLTIFAPRRSLLEVWTVLGNVRV----CAQ 458

Probable regulatory subunit of a GTPase activating protein that has specificity for Rab3 subfamily. Rab3 proteins are involved in regulated exocytosis of neurotransmitters and hormones. Rab3 GTPase-activating complex specifically converts active Rab3-GTP to the inactive form Rab3-GDP.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	453
225461677	457	PREDICTED: rab3 GTPase-activating protei	0.997	0.989	0.777	0.0
297830038	455	hypothetical protein ARALYDRAFT_478912 [	1.0	0.995	0.729	0.0
15231948	455	uncharacterized protein [Arabidopsis tha	1.0	0.995	0.727	0.0
255567076	484	rab3 gtpase-activating protein non-catal	0.971	0.909	0.756	0.0
449456579	456	PREDICTED: rab3 GTPase-activating protei	0.995	0.989	0.715	0.0
449516756	456	PREDICTED: rab3 GTPase-activating protei	0.995	0.989	0.713	0.0
356514563	460	PREDICTED: rab3 GTPase-activating protei	0.995	0.980	0.699	0.0
356543215	459	PREDICTED: rab3 GTPase-activating protei	0.991	0.978	0.706	0.0
224116998	354	predicted protein [Populus trichocarpa]	0.772	0.988	0.777	1e-161
115478506	469	Os09g0315800 [Oryza sativa Japonica Grou	0.991	0.957	0.588	1e-147

>gi|225461677|ref|XP_002285458.1| PREDICTED: rab3 GTPase-activating protein non-catalytic subunit [Vitis vinifera] gi|302142895|emb|CBI20190.3| unnamed protein product [Vitis vinifera]

 Score =  748 bits (1932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/458 (77%), Positives = 411/458 (89%), Gaps = 6/458 (1%)

Query: 1   MSKRTHTTEVGSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANRYQTVIINWA-- 58
           M++R +TTE+G IAC +LS+LGAGKE WLV +P+L+CALD  ++ALANR   +++ W+  
Sbjct: 1   MARRVYTTELGCIACNELSELGAGKEAWLVENPSLICALDTDSLALANRSFVLVLGWSEN 60

Query: 59  -DPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLI 117
            DP     KIRP LS I +E ITA+EWLVF+E+R LAVGTS GY ++Y L  DL+H+Q+I
Sbjct: 61  GDPYNSPVKIRPTLSQIETERITAVEWLVFDEIRVLAVGTSSGYLMIYSLGADLIHKQMI 120

Query: 118 HPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQ 177
           +PGRILK RVRG++RDLTQ ++ EEVCVVMPGV+ARFDG+++Q MLQRWFQD++S FWD+
Sbjct: 121 NPGRILKFRVRGTKRDLTQGSSSEEVCVVMPGVIARFDGADLQSMLQRWFQDTHSQFWDE 180

Query: 178 KPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGE 237
           KPK+RD ED E SY RLP+QLWNVSKYGPCADAAITG MPPPLME+QSSQRY+CAVTIG+
Sbjct: 181 KPKRRDQEDSEKSYGRLPYQLWNVSKYGPCADAAITGTMPPPLMELQSSQRYYCAVTIGD 240

Query: 238 DSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRSEQ-SPKKSEPKPQSFAR 296
           D+VISAFRLSEDR+RSLVGAILSKVVPATFSTI+S SKMIWRSEQ SPK+SEPKPQ FAR
Sbjct: 241 DAVISAFRLSEDRNRSLVGAILSKVVPATFSTIASFSKMIWRSEQKSPKRSEPKPQPFAR 300

Query: 297 ASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFM 356
           ASPLTCLKDHPRKGE+LTLSPSG+LAAITDSLGRILLLDTQALVVVRLWKGYRDASC+F 
Sbjct: 301 ASPLTCLKDHPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWKGYRDASCLFT 360

Query: 357 EMLVNKD-AATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKIL 415
           EMLV+KD AA+SS+YY PVKSDYCLCLAIHAPRKGI+EVWQMRTGPRLLT+QC+KGSKIL
Sbjct: 361 EMLVSKDTAASSSSYYEPVKSDYCLCLAIHAPRKGIVEVWQMRTGPRLLTVQCSKGSKIL 420

Query: 416 QPTYRFGSSMASSPYVPLEVFLLNGDSGQLSVLNRSLS 453
           QPTYRFGSSM  SPYVPLEVFLLNGDSGQLSVLNRSL+
Sbjct: 421 QPTYRFGSSMG-SPYVPLEVFLLNGDSGQLSVLNRSLN 457

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830038|ref|XP_002882901.1| hypothetical protein ARALYDRAFT_478912 [Arabidopsis lyrata subsp. lyrata] gi|297328741|gb|EFH59160.1| hypothetical protein ARALYDRAFT_478912 [Arabidopsis lyrata subsp. lyrata]

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/455 (72%), Positives = 395/455 (86%), Gaps = 2/455 (0%)

Query: 1   MSKRTHTTEVGSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANRYQTVIINWADP 60
           M+KR H TE+G IAC +LS+LGAGKEGWLVN+PNLL ALD H++ALANR+  +I+NW DP
Sbjct: 1   MAKRIHLTELGCIACEELSELGAGKEGWLVNNPNLLSALDSHSLALANRFLILIVNWGDP 60

Query: 61  EGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPG 120
           +    KIRP+LSPI +E ITAIEWLVF+++R +  GTS GY LVY + GDL+H+Q++HP 
Sbjct: 61  DAPRLKIRPDLSPIEAESITAIEWLVFDDVRVVVAGTSCGYLLVYSVAGDLIHKQMVHPS 120

Query: 121 RILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPK 180
           RILK+RVRG+++DL Q+T+ EE+C+V+PG++ARFDGS IQ MLQ+WFQ+ NSNFWDQK +
Sbjct: 121 RILKIRVRGTKKDLMQETSSEEICIVLPGIIARFDGSNIQSMLQKWFQEKNSNFWDQKNR 180

Query: 181 QRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSV 240
           + D ED  + Y+RLP+Q+WNV+K G C DA +TG+MPPPL+E+QSSQRY+CAVTIGED+V
Sbjct: 181 KGDVEDSGSLYQRLPYQIWNVNKNGVCVDATVTGVMPPPLLELQSSQRYYCAVTIGEDAV 240

Query: 241 ISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRS-EQSPK-KSEPKPQSFARAS 298
           ISA+RLSEDR RSLVGAILSKVVPA  STI+S SK+IWRS +QSPK K E K QSFARAS
Sbjct: 241 ISAYRLSEDRGRSLVGAILSKVVPAAASTIASFSKLIWRSNDQSPKRKPEAKTQSFARAS 300

Query: 299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEM 358
            LTC+KD+PRKGE+LTLSPSG+LAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEM
Sbjct: 301 SLTCIKDYPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEM 360

Query: 359 LVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPT 418
           L  KD   S  +  PVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCA GSK+LQP 
Sbjct: 361 LAKKDKGKSVIHTEPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCANGSKLLQPA 420

Query: 419 YRFGSSMASSPYVPLEVFLLNGDSGQLSVLNRSLS 453
           YRFGS+ +SSPY+PLEVFLLNGDSGQ+S+LNRSLS
Sbjct: 421 YRFGSNSSSSPYIPLEVFLLNGDSGQVSMLNRSLS 455

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231948|ref|NP_188109.1| uncharacterized protein [Arabidopsis thaliana] gi|8777474|dbj|BAA97054.1| unnamed protein product [Arabidopsis thaliana] gi|63147384|gb|AAY34165.1| At3g14910 [Arabidopsis thaliana] gi|115646783|gb|ABJ17116.1| At3g14910 [Arabidopsis thaliana] gi|332642066|gb|AEE75587.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/455 (72%), Positives = 395/455 (86%), Gaps = 2/455 (0%)

Query: 1   MSKRTHTTEVGSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANRYQTVIINWADP 60
           M+KR H TE+G IAC +L++LGAGKEGWLVN+PNLL ALD H++ALANR+  +I+NW DP
Sbjct: 1   MAKRIHLTELGCIACEELTELGAGKEGWLVNNPNLLSALDSHSLALANRFLILIVNWGDP 60

Query: 61  EGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPG 120
           +    KIRP+LSPI +E ITAIEWLVF+++R +  GTS GY LVY + GDL+H+Q++H  
Sbjct: 61  DAPRVKIRPDLSPIEAESITAIEWLVFDDVRVVVAGTSCGYLLVYSVTGDLIHKQIVHQS 120

Query: 121 RILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPK 180
           RILK+RVRG+++DL Q+T+ EE+C+V+PGV+ARFDGS IQ M+Q+W Q+ NSNFWDQK +
Sbjct: 121 RILKIRVRGTKKDLMQETSSEEICIVLPGVIARFDGSNIQSMVQKWVQEKNSNFWDQKNR 180

Query: 181 QRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSV 240
           + D+ED  + Y+RLP+Q+WNV+K G C DA +TG+MPPPL+E+QSSQRY+CAVTIGEDSV
Sbjct: 181 KGDAEDTGSLYQRLPYQIWNVNKNGVCVDATVTGVMPPPLLELQSSQRYYCAVTIGEDSV 240

Query: 241 ISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRS-EQSPK-KSEPKPQSFARAS 298
           ISA+RLSEDR RSLVGAILSKVVPA  STI+S SK+IWRS +QSPK K E K QSFARAS
Sbjct: 241 ISAYRLSEDRGRSLVGAILSKVVPAAASTIASFSKLIWRSNDQSPKRKPEAKTQSFARAS 300

Query: 299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEM 358
            LTC+KD+PRKGE+LTLSPSG+LAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEM
Sbjct: 301 SLTCIKDYPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEM 360

Query: 359 LVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPT 418
           L  KD   S  +  PVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSK+LQP 
Sbjct: 361 LAKKDKGKSVIHTEPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKLLQPA 420

Query: 419 YRFGSSMASSPYVPLEVFLLNGDSGQLSVLNRSLS 453
           YRFGS+ +SSPY+PLEVFLLNGDSGQ+S+LNRSLS
Sbjct: 421 YRFGSNSSSSPYIPLEVFLLNGDSGQVSMLNRSLS 455

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567076|ref|XP_002524520.1| rab3 gtpase-activating protein non-catalytic subunit, putative [Ricinus communis] gi|223536194|gb|EEF37847.1| rab3 gtpase-activating protein non-catalytic subunit, putative [Ricinus communis]

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/447 (75%), Positives = 397/447 (88%), Gaps = 7/447 (1%)

Query: 2   SKRTHTTEVGSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANRYQTVIINWADPE 61
           SKR+HTTE+G IAC +LSD+GAGKEGWLV++PNL CALD H+IA++NRY  +I  W D  
Sbjct: 3   SKRSHTTELGCIACEELSDVGAGKEGWLVDNPNLKCALDTHSIAISNRYLILITGWDD-- 60

Query: 62  GLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPGR 121
           G   KIRP+LSPI SE ITA+EWLVF+E+R +AVGTS GYFLVY L G L+H+Q+++PGR
Sbjct: 61  GPRLKIRPDLSPIESESITALEWLVFDEIRVVAVGTSCGYFLVYSLDGHLIHKQMVYPGR 120

Query: 122 ILKLRVRGSRRDLTQDTAE-EEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPK 180
           ILK+RVRG+++DLTQ T+  EE+ +VMPGV+ARFDGS++Q MLQ W Q+ +S FWD+KP 
Sbjct: 121 ILKIRVRGTKKDLTQQTSSSEEISIVMPGVIARFDGSDLQNMLQEWIQEKHSQFWDEKP- 179

Query: 181 QRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSV 240
            RD++ L  +Y+RLP+QLWNV+KYG CADAAITG+MPPPLMEVQSSQRY+CAVTIG+D+V
Sbjct: 180 NRDADGLGITYKRLPYQLWNVNKYGSCADAAITGVMPPPLMEVQSSQRYYCAVTIGDDAV 239

Query: 241 ISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRSEQ-SPKKSEPKPQSFARASP 299
           ISA+RLSEDRS+SLVGAILSKVVPATFSTI+SLSKMIWRSE+ SPKKSE KPQSFA+ASP
Sbjct: 240 ISAYRLSEDRSKSLVGAILSKVVPATFSTIASLSKMIWRSEKASPKKSEAKPQSFAKASP 299

Query: 300 LTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEML 359
           LTCLKDHPRKGE+LTLSP G+LAAITDSLGRILLLDTQAL+VVRLWKGYRDASC FMEM 
Sbjct: 300 LTCLKDHPRKGEKLTLSPGGTLAAITDSLGRILLLDTQALIVVRLWKGYRDASCFFMEMQ 359

Query: 360 VNKD-AATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPT 418
           V +D A  SS+YY P KSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCA+G+K+LQPT
Sbjct: 360 VKRDNAGASSSYYEPSKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCARGTKLLQPT 419

Query: 419 YRFGSSMASSPYVPLEVFLLNGDSGQL 445
           YRFGSS   SPY+PLEVF+LNG+SGQL
Sbjct: 420 YRFGSS-PDSPYIPLEVFVLNGESGQL 445

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456579|ref|XP_004146026.1| PREDICTED: rab3 GTPase-activating protein non-catalytic subunit-like [Cucumis sativus]

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/457 (71%), Positives = 395/457 (86%), Gaps = 6/457 (1%)

Query: 1   MSKRTHTTEVGSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANRYQTVIINWADP 60
           M++RT TTE+G IAC DL+D GAGKEGWLV+ PNLLCALD H++ALANR   +++ W+  
Sbjct: 1   MARRTFTTELGCIACEDLADFGAGKEGWLVDSPNLLCALDSHSLALANRSIILVLGWSGS 60

Query: 61  EGLVAKIRP-ELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHP 119
           +G   KIRP +LSPI +EYI+A+EWLV +E++ + VGTS GYFL+Y L+GDL+ +Q+IHP
Sbjct: 61  DGYPLKIRPSDLSPIEAEYISALEWLVLDEIKVILVGTSCGYFLIYSLRGDLILKQMIHP 120

Query: 120 GRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKP 179
           GRILK+RV GS+RDL+  ++ EEV + MPGV+AR +GS+IQ  LQ+WFQ+S+S FWD K 
Sbjct: 121 GRILKIRVHGSKRDLSHGSSLEEVSIAMPGVIARIEGSDIQNTLQKWFQESSSQFWDPKS 180

Query: 180 KQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDS 239
            QRD  D ENS E+L +Q+WNVSKYG CADAAITG+MPPPLME+QSS+RYFCAVT+GED+
Sbjct: 181 HQRDMNDSENSVEKLAYQVWNVSKYGACADAAITGVMPPPLMELQSSERYFCAVTVGEDA 240

Query: 240 VISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRSE-QSPKKSEPKPQSFARAS 298
           VISAFRLSED+SRSLVGAILSKVVPATFSTI+S SKMIWRSE ++ KK + K Q+FARAS
Sbjct: 241 VISAFRLSEDKSRSLVGAILSKVVPATFSTIASFSKMIWRSEPKTSKKPDAKGQAFARAS 300

Query: 299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEM 358
           PLTCLKDHPRKGE+LTLSPSG+LAAITDSLGRILLLDTQALVVVRLWKGYRDA+C+FMEM
Sbjct: 301 PLTCLKDHPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWKGYRDANCLFMEM 360

Query: 359 LVNKDAATSSAY---YAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKIL 415
           LVN+D A+SS+    Y P K+DYCLCLAIHAPRKGI+E+WQMRTG RL TI+C KGSK+L
Sbjct: 361 LVNRDTASSSSNSMDYEPAKNDYCLCLAIHAPRKGIVEIWQMRTGRRLRTIRCTKGSKLL 420

Query: 416 QPTYRFGSSMASSPYVPLEVFLLNGDSGQLSVLNRSL 452
           QP++R GSSM  SPYVPLEVFLLNGDSGQ+ V+NR+L
Sbjct: 421 QPSFRLGSSM-DSPYVPLEVFLLNGDSGQICVINRTL 456

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516756|ref|XP_004165412.1| PREDICTED: rab3 GTPase-activating protein non-catalytic subunit-like [Cucumis sativus]

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/457 (71%), Positives = 395/457 (86%), Gaps = 6/457 (1%)

Query: 1   MSKRTHTTEVGSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANRYQTVIINWADP 60
           M++RT TTE+G IAC DL+D GAGKEGWLV+ PNLLCALD H++ALA+R   +++ W+  
Sbjct: 1   MARRTFTTELGCIACEDLADFGAGKEGWLVDSPNLLCALDSHSLALASRSIILVLGWSGS 60

Query: 61  EGLVAKIRP-ELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHP 119
           +G   KIRP +LSPI +EYI+A+EWLV +E++ + VGTS GYFL+Y L+GDL+ +Q+IHP
Sbjct: 61  DGYPLKIRPSDLSPIEAEYISALEWLVLDEIKVILVGTSCGYFLIYSLRGDLILKQMIHP 120

Query: 120 GRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKP 179
           GRILK+RV GS+RDL+  ++ EEV + MPGV+AR +GS+IQ  LQ+WFQ+S+S FWD K 
Sbjct: 121 GRILKIRVHGSKRDLSHGSSLEEVSIAMPGVIARIEGSDIQNTLQKWFQESSSQFWDPKS 180

Query: 180 KQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDS 239
            QRD  D ENS E+L +Q+WNVSKYG CADAAITG+MPPPLME+QSS+RYFCAVT+GED+
Sbjct: 181 HQRDMNDSENSVEKLAYQVWNVSKYGACADAAITGVMPPPLMELQSSERYFCAVTVGEDA 240

Query: 240 VISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRSE-QSPKKSEPKPQSFARAS 298
           VISAFRLSED+SRSLVGAILSKVVPATFSTI+S SKMIWRSE ++ KK + K Q+FARAS
Sbjct: 241 VISAFRLSEDKSRSLVGAILSKVVPATFSTIASFSKMIWRSEPKTSKKPDAKGQAFARAS 300

Query: 299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEM 358
           PLTCLKDHPRKGE+LTLSPSG+LAAITDSLGRILLLDTQALVVVRLWKGYRDA+C+FMEM
Sbjct: 301 PLTCLKDHPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWKGYRDANCLFMEM 360

Query: 359 LVNKDAATSSAY---YAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKIL 415
           LVN+D A+SS+    Y P K+DYCLCLAIHAPRKGI+E+WQMRTG RL TI+C KGSK+L
Sbjct: 361 LVNRDTASSSSNSMDYEPAKNDYCLCLAIHAPRKGIVEIWQMRTGRRLRTIRCTKGSKLL 420

Query: 416 QPTYRFGSSMASSPYVPLEVFLLNGDSGQLSVLNRSL 452
           QP++R GSSM  SPYVPLEVFLLNGDSGQ+ V+NR+L
Sbjct: 421 QPSFRLGSSM-DSPYVPLEVFLLNGDSGQICVINRTL 456

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514563|ref|XP_003525975.1| PREDICTED: rab3 GTPase-activating protein non-catalytic subunit-like [Glycine max]

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/459 (69%), Positives = 393/459 (85%), Gaps = 8/459 (1%)

Query: 1   MSKRTHTTEVGSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANRYQTVIINWADP 60
           MS+R++ TE+G IAC +L +LGAGK  WLV  P LLCA+D H++ LANR   ++++W+  
Sbjct: 1   MSRRSYKTELGCIACDELGELGAGKPHWLVETPQLLCAIDTHSLLLANRSTILLLSWSSD 60

Query: 61  EGLVA----KIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQL 116
               A    KIRP+LSPI +E I+A+EWL F + R +  GTS GY L+Y L+G+L+HRQ+
Sbjct: 61  STAAAPPPLKIRPDLSPIDAESISALEWLAFRDHRVIVAGTSSGYLLLYSLQGELIHRQM 120

Query: 117 IHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWD 176
           I+P R+LKLRVRG+++DL QDT+ EE C++M GV+ARFDGS+IQ MLQ+WF+++NS F D
Sbjct: 121 IYPERVLKLRVRGTKKDLIQDTSSEEFCLIMSGVIARFDGSDIQNMLQKWFEEANSRFSD 180

Query: 177 QKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLME-VQSSQRYFCAVTI 235
           Q PK +DSED EN+  ++P+QLWN+ KYG CADAAITG+MPPPLME  QS+QRY+CAV +
Sbjct: 181 QNPKSQDSEDFENTDVKIPYQLWNIGKYGTCADAAITGIMPPPLMEQQQSNQRYYCAVAV 240

Query: 236 GEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRSEQ-SPKKSEPKPQSF 294
           GED+VISA+RLSE++ RSLVGAILSKVVPATFSTISS SK+IWR+E+ SPKKS+ KP+ F
Sbjct: 241 GEDAVISAYRLSENKGRSLVGAILSKVVPATFSTISSFSKLIWRNERSSPKKSDLKPRPF 300

Query: 295 ARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCV 354
           ARASPLTCLKDHPRKGE+LTLSPSG+LAAITDSLGRILLLDTQALVVVRLWKGYRDASC+
Sbjct: 301 ARASPLTCLKDHPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWKGYRDASCL 360

Query: 355 FMEMLVNKD-AATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSK 413
           FMEMLVNKD A++SS+Y  P+KSDYCLCLAIHAPRKGIIE+WQMRTG RL TI C KGSK
Sbjct: 361 FMEMLVNKDIASSSSSYSEPLKSDYCLCLAIHAPRKGIIEIWQMRTGQRLRTISCTKGSK 420

Query: 414 ILQPTYRFGSSMASSPYVPLEVFLLNGDSGQLSVLNRSL 452
           +LQP+YRFG+S+ SSPYVPLEVFLLNGDSGQ+SVLNR+L
Sbjct: 421 MLQPSYRFGASV-SSPYVPLEVFLLNGDSGQISVLNRTL 458

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543215|ref|XP_003540058.1| PREDICTED: rab3 GTPase-activating protein non-catalytic subunit-like [Glycine max]

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/460 (70%), Positives = 388/460 (84%), Gaps = 11/460 (2%)

Query: 1   MSKRTHTTEVGSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANR-----YQTVII 55
           M++R++ TE+G IAC +L +LGAGK  WLV  P LLCA+D H++ LANR           
Sbjct: 1   MARRSYKTELGCIACEELGELGAGKPHWLVETPQLLCAIDTHSLILANRSTILLLSWSSD 60

Query: 56  NWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQ 115
           + A P  L  KIRP+LSPI +E I+A+EWL F + R +  GTS G  L Y L+G+L+HRQ
Sbjct: 61  SSAAPPPL--KIRPDLSPIDAESISALEWLAFRDHRVIVAGTSSGNVLFYSLRGELIHRQ 118

Query: 116 LIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFW 175
           +I+P R+LKLRVRG+++DL QDT+ EE C++M GV+A FDGS+IQ MLQ+WF++S+S FW
Sbjct: 119 MIYPSRVLKLRVRGTKKDLIQDTSSEEFCLIMSGVIAHFDGSDIQNMLQKWFEESHSRFW 178

Query: 176 DQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLME-VQSSQRYFCAVT 234
           DQ PK  DSED  N+  ++P+QLWN+ KYG CA+AAITG+MPPPLME  QSSQRY+CAV 
Sbjct: 179 DQNPKSHDSEDFGNTDVKIPYQLWNIGKYGTCAEAAITGIMPPPLMEQQQSSQRYYCAVA 238

Query: 235 IGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRSEQ-SPKKSEPKPQS 293
           +GED+VISA+RLSE++ RSLVGAILSKVVPATFSTISS SK+IWRSEQ SPKKS+ KPQ 
Sbjct: 239 VGEDAVISAYRLSENKGRSLVGAILSKVVPATFSTISSFSKLIWRSEQSSPKKSDQKPQP 298

Query: 294 FARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASC 353
           FARASPLTCLKDHPRKGE+LTLSPSG+LAAITDSLGRILLLDTQALVVVRLWKGYRDASC
Sbjct: 299 FARASPLTCLKDHPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWKGYRDASC 358

Query: 354 VFMEMLVNKD-AATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGS 412
           +FMEMLVNKD A++SS+Y  P+KSDYCLCLAIHAPRKGIIE+WQMRTGPRL TI CAKGS
Sbjct: 359 LFMEMLVNKDIASSSSSYSEPLKSDYCLCLAIHAPRKGIIEIWQMRTGPRLRTISCAKGS 418

Query: 413 KILQPTYRFGSSMASSPYVPLEVFLLNGDSGQLSVLNRSL 452
           K+LQP+YRFG+SM SSPYVPLEVFLLNGDSGQ+SVLNR+L
Sbjct: 419 KMLQPSYRFGASM-SSPYVPLEVFLLNGDSGQISVLNRTL 457

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116998|ref|XP_002331804.1| predicted protein [Populus trichocarpa] gi|222874500|gb|EEF11631.1| predicted protein [Populus trichocarpa]

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 276/355 (77%), Positives = 326/355 (91%), Gaps = 5/355 (1%)

Query: 103 LVYDLKGDLVHRQLIHPGRILKLRVRGSRRDL--TQDTAEEEVCVVMPGVLARFDGSEIQ 160
           +VY L G L+HRQL++PGRILKLRVRG+++D+  + + + EEV VV+PGV+ARFDG++I+
Sbjct: 1   MVYSLDGLLIHRQLVYPGRILKLRVRGTKKDMMSSHEGSSEEVSVVIPGVIARFDGADIR 60

Query: 161 KMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPL 220
            +LQ WFQ++NS+FWD+K K+RD E+L N ++RLPHQLW+V K+G CADAAITG+MPPPL
Sbjct: 61  NILQEWFQETNSHFWDEKSKRRDYEELGNGFKRLPHQLWSVDKFGLCADAAITGIMPPPL 120

Query: 221 MEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRS 280
           ME+QSSQRY+ AVTIGED+VISA+RLSEDRSRSLVGAILSKV+PA FSTISS+SKMIWRS
Sbjct: 121 MEIQSSQRYYRAVTIGEDAVISAYRLSEDRSRSLVGAILSKVMPAAFSTISSVSKMIWRS 180

Query: 281 EQSP-KKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQAL 339
           E++P KK E KPQSFA+ASPLTCLKDHPRKGE+LTLSPSG+LAAITDSLGRILLLDTQAL
Sbjct: 181 ERTPTKKPEVKPQSFAKASPLTCLKDHPRKGEKLTLSPSGTLAAITDSLGRILLLDTQAL 240

Query: 340 VVVRLWKGYRDASCVFMEMLVNKDAA-TSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMR 398
           VVVRLWKGYRDA+C+FMEMLV+ ++A  SS+++ P KSDYCLCLAIHAPRKGIIEVWQMR
Sbjct: 241 VVVRLWKGYRDANCLFMEMLVSMNSAGASSSHHEPSKSDYCLCLAIHAPRKGIIEVWQMR 300

Query: 399 TGPRLLTIQCAKGSKILQPTYRFGSSMASSPYVPLEVFLLNGDSGQLSVLNRSLS 453
           TGPRLLTIQCAKGSK+LQPTYRFGSS+  SPYVPLEVFLLNGDSGQLSVLNRSL+
Sbjct: 301 TGPRLLTIQCAKGSKLLQPTYRFGSSL-DSPYVPLEVFLLNGDSGQLSVLNRSLN 354

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115478506|ref|NP_001062848.1| Os09g0315800 [Oryza sativa Japonica Group] gi|51091645|dbj|BAD36414.1| rab3-GAP regulatory domain-like [Oryza sativa Japonica Group] gi|113631081|dbj|BAF24762.1| Os09g0315800 [Oryza sativa Japonica Group] gi|218201904|gb|EEC84331.1| hypothetical protein OsI_30840 [Oryza sativa Indica Group] gi|222641308|gb|EEE69440.1| hypothetical protein OsJ_28835 [Oryza sativa Japonica Group]

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 277/471 (58%), Positives = 346/471 (73%), Gaps = 22/471 (4%)

Query: 1   MSKRTHTTEVGSIA-----CTDLSDLGAG-KEGWLVNDPNLLCAL---DMHTIALANRYQ 51
           M++R H   +  +A       DL+ +GAG +EGWL +DP +L +L          +    
Sbjct: 1   MARRGHHHHLAEVALLASASEDLAAVGAGEREGWL-DDPAVLPSLAPRARALAVASAARS 59

Query: 52  TVIINWADPEGLVAKIRPELSPIASEYITAIEW--LVFEEMR-------ALAVGTSRGYF 102
            + +      G    +RP L P     I+A+EW  LV E+         A+AVGT  G+ 
Sbjct: 60  VLAVVPVAGVGGGVTVRPALGPDDGR-ISAVEWVPLVGEDAEEAGGEGVAVAVGTDAGWL 118

Query: 103 LVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKM 162
           L Y L GDL+H+Q I+P +ILKL  R  + +  +D+  +E+ VV PGV+ARFDG+++Q M
Sbjct: 119 LFYSLAGDLLHKQSIYPSKILKLNFRERKENAWEDSGSDELSVVFPGVIARFDGADLQNM 178

Query: 163 LQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLME 222
           LQ+   +  S+ W  K +Q D+E+ ++S+ R+P Q+WNVSK+  CADAAI GLMPPPL+E
Sbjct: 179 LQKSLHEVKSHLWKDKSEQEDAEE-DSSFGRIPFQIWNVSKFSSCADAAIVGLMPPPLLE 237

Query: 223 VQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRSEQ 282
           +QSSQR++CA+T+GED+V+SA+RLSEDRSRS+VGAILS+ V ATFSTISSLSK+IWRSE 
Sbjct: 238 LQSSQRHYCAITVGEDAVVSAYRLSEDRSRSIVGAILSRGVAATFSTISSLSKIIWRSEP 297

Query: 283 SP-KKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVV 341
           SP KKS PKPQSFA+ SPLTCLKD PRKGERLTLSPSG+LAAITDSLGRILLLDT ALV 
Sbjct: 298 SPTKKSRPKPQSFAKTSPLTCLKDSPRKGERLTLSPSGTLAAITDSLGRILLLDTHALVA 357

Query: 342 VRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGP 401
           VRLWKGYRDASC+F+EML+NKD A+SS +    KSDYCLCLAIHAPRKGIIE+WQMRTG 
Sbjct: 358 VRLWKGYRDASCLFVEMLLNKDKASSSLHTEYTKSDYCLCLAIHAPRKGIIEIWQMRTGA 417

Query: 402 RLLTIQCAKGSKILQPTYRFGSSMASSPYVPLEVFLLNGDSGQLSVLNRSL 452
           RLLTI C KGS+ILQP+ RF SS  SS Y PLEV+L NGDSGQLSVLNR +
Sbjct: 418 RLLTIPCPKGSRILQPSTRFMSSPFSSLYSPLEVYLFNGDSGQLSVLNRHI 468

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	453
TAIR|locus:2086390	455	AT3G14910 "AT3G14910" [Arabido	1.0	0.995	0.727	6.6e-184
UNIPROTKB|E1BVG8	1386	RAB3GAP2 "Uncharacterized prot	0.772	0.252	0.266	9.6e-25
UNIPROTKB|D4ABP4	1367	Rab3gap2 "Rab3 GTPase-activati	0.768	0.254	0.261	3.9e-24
UNIPROTKB|E2R4W9	1540	RAB3GAP2 "Uncharacterized prot	0.766	0.225	0.263	1.1e-23
UNIPROTKB|Q9H2M9	1393	RAB3GAP2 "Rab3 GTPase-activati	0.768	0.249	0.258	1.6e-23
RGD|1311518	1386	Rab3gap2 "RAB3 GTPase activati	0.766	0.250	0.258	4.8e-23
UNIPROTKB|F1S9J9	1391	RAB3GAP2 "Uncharacterized prot	0.768	0.250	0.258	4.8e-23
MGI|MGI:1916043	1366	Rab3gap2 "RAB3 GTPase activati	0.766	0.254	0.256	1.8e-22
ZFIN|ZDB-GENE-030616-610	1373	rab3gap2 "RAB3 GTPase activati	0.704	0.232	0.28	1.8e-22
UNIPROTKB|G5E601	1392	RAB3GAP2 "Uncharacterized prot	0.768	0.25	0.253	3.2e-22

TAIR|locus:2086390 AT3G14910 "AT3G14910" [Arabidopsis thaliana (taxid:3702)]

 Score = 1784 (633.1 bits), Expect = 6.6e-184, P = 6.6e-184
 Identities = 331/455 (72%), Positives = 395/455 (86%)

Query:     1 MSKRTHTTEVGSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANRYQTVIINWADP 60
             M+KR H TE+G IAC +L++LGAGKEGWLVN+PNLL ALD H++ALANR+  +I+NW DP
Sbjct:     1 MAKRIHLTELGCIACEELTELGAGKEGWLVNNPNLLSALDSHSLALANRFLILIVNWGDP 60

Query:    61 EGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPG 120
             +    KIRP+LSPI +E ITAIEWLVF+++R +  GTS GY LVY + GDL+H+Q++H  
Sbjct:    61 DAPRVKIRPDLSPIEAESITAIEWLVFDDVRVVVAGTSCGYLLVYSVTGDLIHKQIVHQS 120

Query:   121 RILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPK 180
             RILK+RVRG+++DL Q+T+ EE+C+V+PGV+ARFDGS IQ M+Q+W Q+ NSNFWDQK +
Sbjct:   121 RILKIRVRGTKKDLMQETSSEEICIVLPGVIARFDGSNIQSMVQKWVQEKNSNFWDQKNR 180

Query:   181 QRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSV 240
             + D+ED  + Y+RLP+Q+WNV+K G C DA +TG+MPPPL+E+QSSQRY+CAVTIGEDSV
Sbjct:   181 KGDAEDTGSLYQRLPYQIWNVNKNGVCVDATVTGVMPPPLLELQSSQRYYCAVTIGEDSV 240

Query:   241 ISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRS-EQSPK-KSEPKPQSFARAS 298
             ISA+RLSEDR RSLVGAILSKVVPA  STI+S SK+IWRS +QSPK K E K QSFARAS
Sbjct:   241 ISAYRLSEDRGRSLVGAILSKVVPAAASTIASFSKLIWRSNDQSPKRKPEAKTQSFARAS 300

Query:   299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEM 358
              LTC+KD+PRKGE+LTLSPSG+LAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEM
Sbjct:   301 SLTCIKDYPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEM 360

Query:   359 LVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPT 418
             L  KD   S  +  PVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSK+LQP 
Sbjct:   361 LAKKDKGKSVIHTEPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKLLQPA 420

Query:   419 YRFGSSMASSPYVPLEVFLLNGDSGQLSVLNRSLS 453
             YRFGS+ +SSPY+PLEVFLLNGDSGQ+S+LNRSLS
Sbjct:   421 YRFGSNSSSSPYIPLEVFLLNGDSGQVSMLNRSLS 455

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1BVG8 RAB3GAP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 310 (114.2 bits), Expect = 9.6e-25, P = 9.6e-25
 Identities = 104/390 (26%), Positives = 181/390 (46%)

Query:    93 LAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAE--EEVCVVMPGV 150
             + VG + GY   Y   G L+  QL++   +L+L+ R           E  EE+ ++ P  
Sbjct:   156 IVVGFTSGYVRFYTESGVLLLAQLLNEDPVLQLKCRTYEIPRHPGVTEQNEELSILYPAA 215

Query:   151 LARFDGSEIQKMLQ-------RWFQDSNSNFWDQKP----KQRDSEDLENSYERLPHQLW 199
             +   DG  + + L+       R     N N   Q P    K+   +D++   +     + 
Sbjct:   216 IVTIDGFSLFQSLRACRNQVARAAASGNENV--QPPPLAYKKWGLQDVDTIVDHASVGIM 273

Query:   200 NVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVG--- 256
              +S +     A+  G     +     +   +  VT+G +     F   E  S+ L+    
Sbjct:   274 TLSPFDQMKTASNIGGYNAAIKNSPPAMSQY--VTVGSNPFTGFFFALEGSSQPLLSHVA 331

Query:   257 -AILSKVVPATFSTISSLSKMIWRS--EQSP-KKSEPKPQSFARASPLTC---LKDHPRK 309
              A+ SK+  A F   S    + W+S  E+ P +K +PK +    A+PL     + D  R 
Sbjct:   332 LAVASKLTSALFHAASVSGWLGWKSKHEEEPVQKQKPKVEP---ATPLAVRFGIPDSRRH 388

Query:   310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVN-KDAATSS 368
             GE++ LSP  +LAA+TD  GR++LLD    + +R+WKGYRDA   +++ + +  +  T  
Sbjct:   389 GEKICLSPCNTLAAVTDDFGRVILLDVTRGLAIRMWKGYRDAEVGWIQTVEDLHERETEK 448

Query:   369 AYYAPVKSDYCLC-----LAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRF-G 422
               Y+P  +  C       L I+APR+GI+EVW  + GPR+      K  ++L P Y+  G
Sbjct:   449 IDYSPFGNAQCPSRVAQFLVIYAPRRGILEVWSTQQGPRVGAFNVGKHCRLLYPGYKIMG 508

Query:   423 -SSMASSPYVP--LEVFLLNGDSGQLSVLN 449
              +++ S  + P   ++ L++  SG +  ++
Sbjct:   509 LNNVTSQGWQPQTYQICLVDPVSGSVKTVH 538

GO:0043087 "regulation of GTPase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|D4ABP4 Rab3gap2 "Rab3 GTPase-activating protein non-catalytic subunit" [Rattus norvegicus (taxid:10116)]

 Score = 305 (112.4 bits), Expect = 3.9e-24, P = 3.9e-24
 Identities = 102/390 (26%), Positives = 180/390 (46%)

Query:    93 LAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAE--EEVCVVMPGV 150
             + VG + GY   Y   G L+  QL++  R+L+L+ R           E  EE+ ++ P  
Sbjct:   155 IVVGFTSGYVRFYTESGVLLLAQLLNEDRVLQLKCRTYEIPRHPGVTEQNEELSILYPAA 214

Query:   151 LARFDGSEIQKMLQ-------RWFQDSNSNFWDQKP----KQRDSEDLENSYERLPHQLW 199
             +   DG  + + L+       +     N N   Q P    K+   +D++   +     + 
Sbjct:   215 IVTIDGFSLFQSLRACRNQVAKAAASGNENI--QPPPLAYKKWGLQDIDTIIDHASIGIM 272

Query:   200 NVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVG--- 256
              +S +     A+  G     +     +   +  +T+G       F   E  ++ L+    
Sbjct:   273 TLSPFDQMKTASNIGGFNAAIKNSPPAMSQY--ITVGSSPFTGFFYALEGSTQPLLSHVA 330

Query:   257 -AILSKVVPATFSTISSLSKMIWRS---EQSPKKSEPKPQSFARASPLTC---LKDHPRK 309
              A+ SK+  A FS  S    + W+S   E++ +K +PK +    A+PL     L D  R 
Sbjct:   331 LAVASKLTSALFSAASGW--LGWKSKHEEETVQKQKPKMEP---ATPLAVRFGLPDSRRH 385

Query:   310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVN-KDAATSS 368
             GE + LSP  +LAA+TD  GR++LLD    + +R+WKGYRDA   +++++ +  +     
Sbjct:   386 GESICLSPCNTLAAVTDDFGRVILLDVARGIAIRMWKGYRDAQIGWIQIVEDLHERVPEK 445

Query:   369 AYYAPV-----KSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRF-G 422
               ++P       S     L I+APR+GI+EVW  + GPR+      K  ++L P Y+  G
Sbjct:   446 GDFSPFGNTQGPSRVAQFLVIYAPRRGILEVWSTQQGPRVGAFNVGKHCRLLYPGYKIMG 505

Query:   423 -SSMASSPYVP--LEVFLLNGDSGQLSVLN 449
              +++ S  + P   ++ L++  S  + V+N
Sbjct:   506 LNNVTSQSWQPQTYQICLVDPVSASVKVVN 535

GO:0043087 "regulation of GTPase activity" evidence=IEA

UNIPROTKB|E2R4W9 RAB3GAP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 302 (111.4 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 103/391 (26%), Positives = 183/391 (46%)

Query:    93 LAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAE--EEVCVVMPGV 150
             + VG + GY   Y   G L+  QL++   +L+L+ R           E  EE+ ++ P  
Sbjct:   302 IVVGFTSGYVRFYTENGVLLLAQLLNEELVLQLKCRTYEIPRHPGVTEQNEELSILYPAA 361

Query:   151 LARFDGSEIQKMLQ-------RWFQDSNSNFWDQKP----KQRDSEDLENSYERLPHQLW 199
             +   DG  + + L+       +     N N   Q P    K+   +D++   +     + 
Sbjct:   362 IVTIDGFSLFQSLRACRNQVAKAAASGNENI--QPPPLAYKKWGLQDIDTIIDHASIGIM 419

Query:   200 NVSKYGPCADAA-ITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVG-- 256
              +S +     A+ I G        + +  +Y   +T+G +     F   E  ++ L+   
Sbjct:   420 TLSPFDQMKTASNIGGFNAAIKNSLPAMSQY---ITVGSNPFTGFFYALEGSTQPLLSHV 476

Query:   257 --AILSKVVPATFSTISSLSKMIWRS---EQSPKKSEPKPQSFARASPLTC---LKDHPR 308
               A+ SK+  A F+  S    + W+S   E++ +K +PK +    A+PL     L D  R
Sbjct:   477 ALAVASKLTSALFNAASGW--LGWKSKHEEEAVQKQKPKVEP---ATPLAVRFGLPDSRR 531

Query:   309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVN-KDAATS 367
              GE + LSP  +LAA+TD  GR++LLD    + +R+WKGYRDA   +++++ +  +    
Sbjct:   532 HGESICLSPCNTLAAVTDDFGRVILLDVARGIAIRMWKGYRDAQIGWIQIVEDLHERVPE 591

Query:   368 SAYYAPV-----KSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRF- 421
              A ++P       S     L I+APR+GI+EVW  + GPR+      K  ++L P Y+  
Sbjct:   592 KADFSPFGNTQGPSRVAQFLVIYAPRRGILEVWSTQQGPRVGAFNVGKHCRLLYPGYKIM 651

Query:   422 G-SSMASSPYVP--LEVFLLNGDSGQLSVLN 449
             G +++ S  + P   ++ L++  SG +  +N
Sbjct:   652 GLNNVTSQSWQPQTYQICLVDPVSGSVKTVN 682

GO:0043087 "regulation of GTPase activity" evidence=IEA

UNIPROTKB|Q9H2M9 RAB3GAP2 "Rab3 GTPase-activating protein non-catalytic subunit" [Homo sapiens (taxid:9606)]

 Score = 300 (110.7 bits), Expect = 1.6e-23, P = 1.6e-23
 Identities = 101/390 (25%), Positives = 180/390 (46%)

Query:    93 LAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAE--EEVCVVMPGV 150
             + VG + GY   Y   G L+  QL++   +L+L+ R           E  EE+ ++ P  
Sbjct:   156 IVVGFTSGYVRFYTENGVLLLAQLLNEDPVLQLKCRTYEIPRHPGVTEQNEELSILYPAA 215

Query:   151 LARFDGSEIQKMLQ-------RWFQDSNSNFWDQKP----KQRDSEDLENSYERLPHQLW 199
             +   DG  + + L+       +     N N   Q P    K+   +D++   +     + 
Sbjct:   216 IVTIDGFSLFQSLRACRNQVAKAAASGNENI--QPPPLAYKKWGLQDIDTIIDHASVGIM 273

Query:   200 NVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVG--- 256
              +S +     A+  G     +     +   +  +T+G +     F   E  ++ L+    
Sbjct:   274 TLSPFDQMKTASNIGGFNAAIKNSPPAMSQY--ITVGSNPFTGFFYALEGSTQPLLSHVA 331

Query:   257 -AILSKVVPATFSTISSLSKMIWRS---EQSPKKSEPKPQSFARASPLTC---LKDHPRK 309
              A+ SK+  A F+  S    + W+S   E++ +K +PK +    A+PL     L D  R 
Sbjct:   332 LAVASKLTSALFNAASGW--LGWKSKHEEEAVQKQKPKVEP---ATPLAVRFGLPDSRRH 386

Query:   310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVN-KDAATSS 368
             GE + LSP  +LAA+TD  GR++LLD    + +R+WKGYRDA   +++ + +  +     
Sbjct:   387 GESICLSPCNTLAAVTDDFGRVILLDVARGIAIRMWKGYRDAQIGWIQTVEDLHERVPEK 446

Query:   369 AYYAPV-----KSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRF-G 422
             A ++P       S     L I+APR+GI+EVW  + GPR+      K  ++L P Y+  G
Sbjct:   447 ADFSPFGNSQGPSRVAQFLVIYAPRRGILEVWSTQQGPRVGAFNVGKHCRLLYPGYKIMG 506

Query:   423 -SSMASSPYVP--LEVFLLNGDSGQLSVLN 449
              +++ S  + P   ++ L++  SG +  +N
Sbjct:   507 LNNVTSQSWQPQTYQICLVDPVSGSVKTVN 536

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0030234 "enzyme regulator activity" evidence=ISS

GO:0046982 "protein heterodimerization activity" evidence=ISS

GO:0043087 "regulation of GTPase activity" evidence=ISS

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0008047 "enzyme activator activity" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0043085 "positive regulation of catalytic activity" evidence=TAS

GO:0043547 "positive regulation of GTPase activity" evidence=TAS

RGD|1311518 Rab3gap2 "RAB3 GTPase activating protein subunit 2" [Rattus norvegicus (taxid:10116)]

 Score = 296 (109.3 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 101/390 (25%), Positives = 180/390 (46%)

Query:    93 LAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAE--EEVCVVMPGV 150
             + VG + GY   Y  +G L+  QL++  R+L+L+ R           E  EE+ ++ P  
Sbjct:   155 IVVGFTSGYVRFYT-EGVLLLAQLLNEDRVLQLKCRTYEIPRHPGVTEQNEELSILYPAA 213

Query:   151 LARFDGSEIQKMLQ-------RWFQDSNSNFWDQKP----KQRDSEDLENSYERLPHQLW 199
             +   DG  + + L+       +     N N   Q P    K+   +D++   +     + 
Sbjct:   214 IVTIDGFSLFQSLRACRNQVAKAAASGNENI--QPPPLAYKKWGLQDIDTIIDHASIGIM 271

Query:   200 NVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVG--- 256
              +S +     A+  G     +     +   +  +T+G       F   E  ++ L+    
Sbjct:   272 TLSPFDQMKTASNIGGFNAAIKNSPPAMSQY--ITVGSSPFTGFFYALEGSTQPLLSHVA 329

Query:   257 -AILSKVVPATFSTISSLSKMIWRS---EQSPKKSEPKPQSFARASPLTC---LKDHPRK 309
              A+ SK+  A FS  S    + W+S   E++ +K +PK +    A+PL     L D  R 
Sbjct:   330 LAVASKLTSALFSAASGW--LGWKSKHEEETVQKQKPKMEP---ATPLAVRFGLPDSRRH 384

Query:   310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVN-KDAATSS 368
             GE + LSP  +LAA+TD  GR++LLD    + +R+WKGYRDA   +++++ +  +     
Sbjct:   385 GESICLSPCNTLAAVTDDFGRVILLDVARGIAIRMWKGYRDAQIGWIQIVEDLHERVPEK 444

Query:   369 AYYAPV-----KSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRF-G 422
               ++P       S     L I+APR+GI+EVW  + GPR+      K  ++L P Y+  G
Sbjct:   445 GDFSPFGNTQGPSRVAQFLVIYAPRRGILEVWSTQQGPRVGAFNVGKHCRLLYPGYKIMG 504

Query:   423 -SSMASSPYVP--LEVFLLNGDSGQLSVLN 449
              +++ S  + P   ++ L++  S  +  +N
Sbjct:   505 LNNVTSQSWQPQTYQICLVDPVSASVKAVN 534

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0030234 "enzyme regulator activity" evidence=IDA

GO:0043087 "regulation of GTPase activity" evidence=IEA;IDA

GO:0046982 "protein heterodimerization activity" evidence=IPI

UNIPROTKB|F1S9J9 RAB3GAP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 296 (109.3 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 101/390 (25%), Positives = 181/390 (46%)

Query:    93 LAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAE--EEVCVVMPGV 150
             + VG S GY   Y   G L+  QL++   +L+L+ R           E  EE+ ++ P  
Sbjct:   155 IVVGFSSGYLRFYTQNGVLLLAQLLNEDLVLQLKCRTYEIPRHPGVTEQNEELSILYPAA 214

Query:   151 LARFDGSEIQKMLQ-------RWFQDSNSNFWDQKP----KQRDSEDLENSYERLPHQLW 199
             +   DG  + + L+       +     N N   Q P    K+   +D++   +     + 
Sbjct:   215 IVTIDGFSLFQSLRACRNQVAKAAASGNENI--QPPPLAYKKWGLQDIDTIIDHASIGIM 272

Query:   200 NVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVG--- 256
              +S +     A+  G     +     +   +  +T+G +     F   E  ++ L+    
Sbjct:   273 TLSPFDQMKTASNIGGYNAAIKNSPPAMSQY--ITVGSNPFTGFFYALEGSTQPLLSHVA 330

Query:   257 -AILSKVVPATFSTISSLSKMIWRS---EQSPKKSEPKPQSFARASPLTC---LKDHPRK 309
              A+ SK+  A F+  S    + W+S   E++  + +PK +    A+PL     L D  R 
Sbjct:   331 LAVASKLTSALFNAASGW--LGWKSKHEEEAVPRQKPKVEP---ATPLAVRFGLPDSRRH 385

Query:   310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVN-----KDA 364
             GE + LSP  +LAA+TD  GR++LLD    + +R+WKGYRDA   +++++ +      + 
Sbjct:   386 GESICLSPCNTLAAVTDDFGRVILLDVTRGIAIRMWKGYRDAQTGWIQIVEDLHERVPER 445

Query:   365 ATSSAYYAPV-KSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRF-G 422
             A  S + +P   S     L I+APR+GI+EVW  + GPR+      K  ++L P Y+  G
Sbjct:   446 ADFSPFGSPQGPSRVAQFLVIYAPRRGILEVWSTQQGPRVGAFNVGKHCRLLYPGYKIMG 505

Query:   423 -SSMASSPYVP--LEVFLLNGDSGQLSVLN 449
              +++ S  + P   ++ L++  SG +  ++
Sbjct:   506 LNNVTSQSWQPQTYQICLVDPVSGSVKTVS 535

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0043087 "regulation of GTPase activity" evidence=IEA

MGI|MGI:1916043 Rab3gap2 "RAB3 GTPase activating protein subunit 2" [Mus musculus (taxid:10090)]

 Score = 291 (107.5 bits), Expect = 1.8e-22, P = 1.8e-22
 Identities = 100/390 (25%), Positives = 179/390 (45%)

Query:    93 LAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAE--EEVCVVMPGV 150
             + VG + GY   Y  +G L+  QL++  ++L+L+ R           E  EE+ ++ P  
Sbjct:   155 IVVGFTSGYVRFYT-EGVLLLAQLLNEDKVLQLKCRTYEIPRHPGVTEQNEELSILYPAA 213

Query:   151 LARFDGSEIQKMLQ-------RWFQDSNSNFWDQKP----KQRDSEDLENSYERLPHQLW 199
             +   DG  + + L+       +     N N   Q P    K+   +D++   +     + 
Sbjct:   214 IVTIDGFSLFQSLRACRNQVAKAAASGNENI--QPPPLAYKKWGLQDIDTIIDHASVGIM 271

Query:   200 NVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVG--- 256
              +S +     A+  G     +     +   +  +T+G       F   E  ++ L+    
Sbjct:   272 TLSPFDQMKTASNIGGFNAAIKNSPPAMSQY--ITVGSSPFTGFFYALEGSTQPLLSHVA 329

Query:   257 -AILSKVVPATFSTISSLSKMIWRS---EQSPKKSEPKPQSFARASPLTC---LKDHPRK 309
              A+ SK+  A FS  S    + W+S   E + +K +PK +    A+PL     L D  R 
Sbjct:   330 LAVASKLTSALFSAASGW--LGWKSKHEEDTVQKQKPKMEP---ATPLAVRFGLPDSRRH 384

Query:   310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVN-KDAATSS 368
             GE + LSP  +LAA+TD  GR++LLD    + +R+WKGYRDA   +++++ +  +     
Sbjct:   385 GESICLSPCNTLAAVTDDFGRVILLDVARGIAIRMWKGYRDAQVGWIQIVEDLHERVPEK 444

Query:   369 AYYAPV-----KSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRF-G 422
               ++P       S     L I+APR+GI+EVW  + GPR+      K  ++L P Y+  G
Sbjct:   445 GGFSPFGNTQGPSRVAQFLVIYAPRRGILEVWNTQQGPRVGAFNVGKHCRLLYPGYKIMG 504

Query:   423 -SSMASSPYVP--LEVFLLNGDSGQLSVLN 449
              +++ S  + P   ++ L++  S  +  +N
Sbjct:   505 LNNVTSQSWQPQTYQICLVDPVSASVKAVN 534

GO:0003674 "molecular_function" evidence=ND

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0043087 "regulation of GTPase activity" evidence=IEA

ZFIN|ZDB-GENE-030616-610 rab3gap2 "RAB3 GTPase activating protein subunit 2 (non-catalytic)" [Danio rerio (taxid:7955)]

 Score = 291 (107.5 bits), Expect = 1.8e-22, P = 1.8e-22
 Identities = 98/350 (28%), Positives = 162/350 (46%)

Query:    93 LAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAE--EEVCVVMPGV 150
             + VG S GY   Y   G L+  QL+H   +L+L+ R           E  EE+ ++ P  
Sbjct:   156 IVVGFSSGYVRFYTESGVLLLAQLLHEDPVLRLKCRTYEIPRHPGVTEQHEELSILYPAA 215

Query:   151 LARFDGSEIQKMLQRWFQD------SNSNFWDQKP---KQRDSEDLENSYERLPHQLWNV 201
             L   DG  + + L+           + S+     P   K+   +D++   +     +  +
Sbjct:   216 LVTIDGFSLFQSLRACRNQVARAAAAGSDVIQPPPLAYKKWGLQDMDTIADHSSIGITTL 275

Query:   202 SKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVG----A 257
             S +    +A+I G     +     +   +  +T+G       F   E  S+ L+     A
Sbjct:   276 SVFDQMKNASILGGFHASVKGSPPAMSQY--ITVGGGPYTGFFYAIEGSSQPLLSHVALA 333

Query:   258 ILSKVVPATFSTISSLSKMIWRS---EQSPKKSEPKPQSFARASPLTC-LKDHPRKGERL 313
             + SK+  A FS  S    + W+S   E+S +K +PK +  A A P+   L D  R GE +
Sbjct:   334 VASKLTSALFSAASGW--LGWKSKNEEESVQKQKPKVEP-ATALPVRFGLPDSRRHGESI 390

Query:   314 TLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLV---NKDAATSSAY 370
              LSP  ++A +TD  GR+ LLD    + +R+WKGYRDA   ++++      +D ATS + 
Sbjct:   391 CLSPCNTMAGVTDDFGRVTLLDVARGIAIRMWKGYRDAQLGWVQVSEARGERDIATSPSM 450

Query:   371 YAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYR 420
               P +  +   L I+APR+GI+EVW  + GPR+      K  ++L   +R
Sbjct:   451 --PRR--HAQFLVIYAPRRGILEVWGTQHGPRVGAFTVGKHCRLLYGGHR 496

GO:0005179 "hormone activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0043087 "regulation of GTPase activity" evidence=IEA

UNIPROTKB|G5E601 RAB3GAP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 289 (106.8 bits), Expect = 3.2e-22, P = 3.2e-22
 Identities = 99/390 (25%), Positives = 179/390 (45%)

Query:    93 LAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAE--EEVCVVMPGV 150
             + VG + GY   Y   G L+  QL++   +L+L+ R           E  EE+ ++ P  
Sbjct:   155 IVVGFTSGYVRFYTENGVLLLAQLLNEDSVLQLKCRTYEIPRHPGVTEQNEELSILYPAA 214

Query:   151 LARFDGSEIQKMLQ-------RWFQDSNSNFWDQKP----KQRDSEDLENSYERLPHQLW 199
             +   DG  + + L+       +     N N   Q P    K+   +D++   +     + 
Sbjct:   215 IVTIDGFSLFQSLRACRNQVAKAAASGNENI--QPPPLAYKKWGLQDIDTIIDHASIGIM 272

Query:   200 NVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVG--- 256
              +S +     A+  G     +     +   +  +T+G       F   E  ++ L+    
Sbjct:   273 TLSPFDQMKTASNIGGYNAAIKNSPPAMSQY--ITVGSSPFTGFFYALEGSTQPLLSHVA 330

Query:   257 -AILSKVVPATFSTISSLSKMIWRS---EQSPKKSEPKPQSFARASPLTC---LKDHPRK 309
              A+ SK+  A F+  S    + W+S   E++ +K +PK +    A+PL     L D  R 
Sbjct:   331 LAVASKLTSALFNAASGW--LGWKSKHEEEAFQKQKPKVEP---ATPLAVRFGLPDSRRH 385

Query:   310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVN-KDAATSS 368
             GE + LSP  +LAA+TD  GR++LLD    + +R+WKGYRDA   +++++ +  +     
Sbjct:   386 GESICLSPCNTLAAVTDDFGRVILLDVARGIAIRMWKGYRDAQTGWIQIVEDLHERVPEK 445

Query:   369 AYYAPVKSDY-----CLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRF-G 422
               ++P  S          L I+APR+GI+EVW  + GPR+      K  ++L P Y+  G
Sbjct:   446 GDFSPFGSPQGPSRVAQFLVIYAPRRGILEVWSTQQGPRVGAFNVGKYCRLLYPGYKIMG 505

Query:   423 -SSMASSPYVP--LEVFLLNGDSGQLSVLN 449
              +++ S  + P   ++ L++  SG +  ++
Sbjct:   506 LNNITSQSWQPQTYQICLVDPVSGSVKTVS 535

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0043087 "regulation of GTPase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	453
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	100.0
KOG2727	1244	consensus Rab3 GTPase-activating protein, non-cata	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	97.87
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	97.8
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	96.98
KOG0266	456	consensus WD40 repeat-containing protein [General	96.95
KOG0266	456	consensus WD40 repeat-containing protein [General	96.89
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	96.88
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	96.82
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	96.75
PTZ00421	493	coronin; Provisional	96.64
KOG0649	325	consensus WD40 repeat protein [General function pr	96.52
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	96.22
PLN00181	793	protein SPA1-RELATED; Provisional	95.9
PTZ00420	568	coronin; Provisional	95.74
KOG0263	707	consensus Transcription initiation factor TFIID, s	95.59
KOG1539	910	consensus WD repeat protein [General function pred	95.57
PF12341	27	DUF3639: Protein of unknown function (DUF3639) ; I	95.57
PTZ00421	493	coronin; Provisional	95.54
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	95.5
KOG0263	707	consensus Transcription initiation factor TFIID, s	95.42
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	95.17
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	95.02
PTZ00420	568	coronin; Provisional	94.96
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	94.88
KOG0296	399	consensus Angio-associated migratory cell protein	94.84
KOG0284	464	consensus Polyadenylation factor I complex, subuni	93.66
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	93.55
KOG0639	705	consensus Transducin-like enhancer of split protei	93.51
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	93.44
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	92.69
KOG4328	498	consensus WD40 protein [Function unknown]	92.58
KOG0316	307	consensus Conserved WD40 repeat-containing protein	92.55
PF14727	418	PHTB1_N: PTHB1 N-terminus	92.33
PLN00181	793	protein SPA1-RELATED; Provisional	92.2
KOG0315	311	consensus G-protein beta subunit-like protein (con	92.19
KOG0295	406	consensus WD40 repeat-containing protein [Function	92.19
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	92.17
KOG0279	315	consensus G protein beta subunit-like protein [Sig	91.98
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	91.23
KOG0308	735	consensus Conserved WD40 repeat-containing protein	90.94
KOG1274	933	consensus WD40 repeat protein [General function pr	90.83
KOG0286	343	consensus G-protein beta subunit [General function	90.64
KOG0282	503	consensus mRNA splicing factor [Function unknown]	90.24
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	90.11
KOG1912	1062	consensus WD40 repeat protein [General function pr	89.88
KOG0318	603	consensus WD40 repeat stress protein/actin interac	89.84
KOG0310	487	consensus Conserved WD40 repeat-containing protein	89.68
KOG1188	376	consensus WD40 repeat protein [General function pr	89.65
KOG2727	1244	consensus Rab3 GTPase-activating protein, non-cata	89.54
KOG1273	405	consensus WD40 repeat protein [General function pr	89.37
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	89.27
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	89.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	88.95
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	88.47
KOG1407	313	consensus WD40 repeat protein [Function unknown]	88.31
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	88.3
PRK03629	429	tolB translocation protein TolB; Provisional	88.17
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	88.05
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	87.61
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	87.4
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	87.29
KOG0283	712	consensus WD40 repeat-containing protein [Function	85.82
KOG0318	603	consensus WD40 repeat stress protein/actin interac	85.31
KOG0282	503	consensus mRNA splicing factor [Function unknown]	85.15
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	84.76
KOG0316	307	consensus Conserved WD40 repeat-containing protein	84.09
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	83.86
KOG0286	343	consensus G-protein beta subunit [General function	83.71
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	83.63
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	83.32
KOG0289	506	consensus mRNA splicing factor [General function p	83.06
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	82.79
KOG1274	933	consensus WD40 repeat protein [General function pr	82.63
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	82.02
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	81.37
KOG0288	459	consensus WD40 repeat protein TipD [General functi	81.33
COG2319	466	FOG: WD40 repeat [General function prediction only	80.43
PRK11028	330	6-phosphogluconolactonase; Provisional	80.35
KOG1539	910	consensus WD repeat protein [General function pred	80.03

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=100.00  E-value=3.8e-105  Score=827.11  Aligned_cols=375  Identities=34%  Similarity=0.531  Sum_probs=323.1

Q ss_pred             cccCCCeeeeccCcceeeeeecceEEE--EeecCCC---C---CceeEeecCCCCCCCcEEEEEEEEe---------CCc
Q 012917           28 WLVNDPNLLCALDMHTIALANRYQTVI--INWADPE---G---LVAKIRPELSPIASEYITAIEWLVF---------EEM   90 (453)
Q Consensus        28 wl~~~~~~~~sp~~~~la~A~~~~~v~--~~w~~~~---~---~~~~~~g~l~~~~~e~ITs~~~lp~---------~dw   90 (453)
                      |||| |++++||+||+||||+++|+||  .+|++.+   +   +.+.|+|+|+.+++|+|||++||||         +||
T Consensus         1 WL~~-~~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw   79 (415)
T PF14655_consen    1 WLQD-CSISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDW   79 (415)
T ss_pred             Cccc-ceEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCc
Confidence            9999 9999999999999999999999  5895533   2   3389999999977899999999999         899


Q ss_pred             EEEEEeccccEEEEEecCCcEeeecccCccceeEEEEeeccCCCCcCCCCCeEEEEeCCeEEEEeChhHHHHHHHHHHhc
Q 012917           91 RALAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDS  170 (453)
Q Consensus        91 ~~I~VG~ssG~vrfyte~G~LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~~i~~idG~~L~~~L~~c~~~~  170 (453)
                      +||||||++||||||||+|+|||+|+||++||++||||+++++..++...|||+|+||++||+|||++|+++|++|++|+
T Consensus        80 ~~I~VG~ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~~~~~~~~~~~~eel~ily~~~v~~Idg~sL~~~L~~~~~~~  159 (415)
T PF14655_consen   80 TCIAVGTSSGYVRFYTENGVLLLSQLLHEEPVLKIKCRSTKIPRHPGDSSEELSILYPSAVVIIDGFSLFSVLRACRNQV  159 (415)
T ss_pred             EEEEEEecccEEEEEeccchHHHHHhcCccceEEEEecccCCCCCCcccccEEEEEECCEEEEEecHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999866666666999999999999999999999999999999


Q ss_pred             cccccCCCCccCCCccccCccCCccceecccCCCCceeeEEEeCcCCCCchhhc--------------ccccceEEEEeC
Q 012917          171 NSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQ--------------SSQRYFCAVTIG  236 (453)
Q Consensus       171 ~~~~w~~~~~~~~~~~~~~~~~~L~ykKW~l~~~~~i~Daa~~G~~~p~~~d~~--------------s~~~~~~~i~vG  236 (453)
                      +++.|+.+       + ...+++|+||||+|++++.|+|++++|+++|++||+.              +.+.++++|++|
T Consensus       160 ~~~~~~~~-------~-~~~~~~L~ykKw~l~~~~~i~D~~~~G~~~~~~fd~l~~aS~~gf~a~~~~s~~~~~~~i~~G  231 (415)
T PF14655_consen  160 ARGAASGS-------D-SPAPPPLSYKKWNLQSQDTINDAAICGPMPPSTFDHLVTASIGGFNAKYRSSPPRMSRYITVG  231 (415)
T ss_pred             hhhhhccc-------c-cCCCCccceeEecCCCCCcEeeEEEecCCCCcHHHHHHhhhcccccceeecCCcceEEEEEec
Confidence            99865321       2 2347889999999999999999999999999999974              345778999999


Q ss_pred             CCceeEEEEeccCCCcchhhhhhhhhhh-HHHHHHhhhhh--ccccCCCCCC-CC-----CCCCCccccCCCCccccCCC
Q 012917          237 EDSVISAFRLSEDRSRSLVGAILSKVVP-ATFSTISSLSK--MIWRSEQSPK-KS-----EPKPQSFARASPLTCLKDHP  307 (453)
Q Consensus       237 ~~P~la~y~~~e~~~~s~~~a~~S~va~-av~S~~~s~ak--~~W~~~~~~~-~~-----e~~p~~~~~a~pl~~l~D~~  307 (453)
                      ++||+|||+++|+.+++    ++++|+. +|+|+++++++  ++|+.+++++ ++     ++++++.++..+..+|+|.+
T Consensus       232 ~~P~v~f~~~~e~~s~~----~ls~va~~aVas~l~sav~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~l~D~~  307 (415)
T PF14655_consen  232 SSPFVSFYYASEGSSQP----LLSDVASSAVASKLTSAVSGWLGWGSWRSEQQPQEKQPPEPKPEPAAPLPMRFGLPDSK  307 (415)
T ss_pred             CCceEEEEEccCCCCcc----cHHHHHHHHHHHHHHhhhHhhcccCCCCCccccccccccccCcCCCcccceEEeeccCC
Confidence            99999999999887775    5777777 88888888766  3333333221 11     22333333344456899999


Q ss_pred             CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917          308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP  387 (453)
Q Consensus       308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap  387 (453)
                      |++++|++||+++|||+||+||||+|+|+++++|||||||||||||+|+++.++.+...+..+....+.+.+||||||||
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap  387 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP  387 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence            99999999999999999999999999999999999999999999999999998876533333444455577999999999


Q ss_pred             CCCeEEEeecCCCCeEEEEEecCCeEEe
Q 012917          388 RKGIIEVWQMRTGPRLLTIQCAKGSKIL  415 (453)
Q Consensus       388 rRg~lEVW~~~~G~RV~a~~v~~~~~Ll  415 (453)
                      |||+||||+||+||||+||+|+|+||||
T Consensus       388 rRg~lEvW~~~~g~Rv~a~~v~k~~rLl  415 (415)
T PF14655_consen  388 RRGILEVWSMRQGPRVAAFNVGKGCRLL  415 (415)
T ss_pred             cCCeEEEEecCCCCEEEEEEeCCCcEEC
Confidence            9999999999999999999999999996

>KOG2727 consensus Rab3 GTPase-activating protein, non-catalytic subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-102  Score=839.32  Aligned_cols=426  Identities=44%  Similarity=0.645  Sum_probs=370.1

Q ss_pred             CCCCcccceeeeeeecccccccCCCCCcccCCCeeeeccCcceeeeeecceEEE--EeecCCCCC---ceeEeecCCCCC
Q 012917            1 MSKRTHTTEVGSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANRYQTVI--INWADPEGL---VAKIRPELSPIA   75 (453)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~g~~~~~wl~~~~~~~~sp~~~~la~A~~~~~v~--~~w~~~~~~---~~~~~g~l~~~~   75 (453)
                      |.+|.|.+|.||+.|+|+.+.|+++  ||++ |+++++|++|++++|+++||||  .+|++++++   .|.|+|+|++++
T Consensus         1 ~w~~w~~~e~g~~e~ee~t~lg~~~--WL~~-cnl~l~s~~d~~~~A~e~rfvfL~~~Wk~pd~p~~~~Vgw~g~l~dpe   77 (1244)
T KOG2727|consen    1 MWKRWHLTELGCIECEELTELGAGK--WLLV-CNLNLLSALDSHSLALENRFVFLIVNWKDPDAPVYKRVGWRGDLSDPE   77 (1244)
T ss_pred             CcccccccccCchhhhhhhcccccc--hHHh-cCcccCcchHHHHHHhhcceEEEEecCCCCCCCceEEEEeccccCCcc
Confidence            7789999999999999999999988  9999 9999999999999999999999  689999977   499999999988


Q ss_pred             CCcEEEEEEEEe--------CCcEEEEEeccccEEEEEecCCcEeeecccCccceeEEEEeeccCCCCcCCCCCeEEEEe
Q 012917           76 SEYITAIEWLVF--------EEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVM  147 (453)
Q Consensus        76 ~e~ITs~~~lp~--------~dw~~I~VG~ssG~vrfyte~G~LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ily  147 (453)
                      +|+|||++|+||        +|||||||||++|||+||||+|.|||+|.+|++||++||||+++.       +++++|+|
T Consensus        78 ~e~ITa~~clpl~n~s~dgr~dwtcVavGt~sGyV~FYTe~Gvllf~Q~~~edPVl~lk~r~~k~-------d~~l~i~y  150 (1244)
T KOG2727|consen   78 AESITAIECLPLDNVSHDGRVDWTCVAVGTSSGYVLFYTETGVLLFKQIVHEDPVLKLKVRGTKK-------DLMLEISY  150 (1244)
T ss_pred             cceeeeeeeeeccccccccccceeEEEEecccceEEEEecccHHHHHHHhccCccceEEEEEeec-------CcEEEEee
Confidence            999999999999        799999999999999999999999999999999999999999976       88999999


Q ss_pred             CCeEEEEeChhHHHHHHHHHHhccccccCCCCccCCCccccCccCCccceeccc-CCCC-ceeeEEEeCcCCCCchhh--
Q 012917          148 PGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNV-SKYG-PCADAAITGLMPPPLMEV--  223 (453)
Q Consensus       148 p~~i~~idG~~L~~~L~~c~~~~~~~~w~~~~~~~~~~~~~~~~~~L~ykKW~l-~~~~-~i~Daa~~G~~~p~~~d~--  223 (453)
                      |.++|+|+|++|++.|+||+++++++.      ..+  +.....++++||||.+ ++.. .|.|+++-+...||++|+  
T Consensus       151 p~~~~~I~g~sl~~~L~ncq~~Vqkaa------~Ek--nsn~~~~~~~~qk~~l~qdi~~~I~hai~~~~~~ppt~Dq~v  222 (1244)
T KOG2727|consen  151 PEICIVIPGVSLRFDLSNCQSMVQKAA------QEK--NSNFWDQKNRKQKAELTQDIYQRIPHAIWNVNKNPPTVDQTV  222 (1244)
T ss_pred             cceEEEECCchhhhhHHHHHHHHHHHH------Hhc--cCCcCCccchhhhhhcccchhhccchheeecccCCccHHHhh
Confidence            999999999999999999999999873      111  1122457799999999 5444 555555555577888988  


Q ss_pred             -c------------ccccceEEEEeCCCceeEEEEeccCCCcchhhhhhhhhhhHHHHHHhhhhhccccCCC---CCCCC
Q 012917          224 -Q------------SSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRSEQ---SPKKS  287 (453)
Q Consensus       224 -~------------s~~~~~~~i~vG~~P~la~y~~~e~~~~s~~~a~~S~va~av~S~~~s~ak~~W~~~~---~~~~~  287 (453)
                       +            |-.+|++++++|++||++||+++|+.+++++++++.+|++++.+-+.|... +|.+++   +..++
T Consensus       223 tas~~~gy~a~~k~SpPrySq~vt~ge~pf~gFf~a~eg~~~~llg~Vak~v~s~A~sn~asg~f-gi~~ep~~sp~~kp  301 (1244)
T KOG2727|consen  223 TASMPPGYLALQKPSPPRYSQAVTIGEDPFIGFFRASEGRGRSLLGAVAKKVVSAAASNIASGSF-GIWREPDQSPKRKP  301 (1244)
T ss_pred             hcccCchhhhhccCCCcceeeeEEecCCceeeeeeeccccccccHHHHHHHhhhhhhhhhhhhee-eccCCCCcChhhcC
Confidence             2            234888999999999999999999999987777777777766554444333 443333   34566


Q ss_pred             CCCCCccccCCCCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEeccccccc
Q 012917          288 EPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATS  367 (453)
Q Consensus       288 e~~p~~~~~a~pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~  367 (453)
                      +||+++..+++.+.+|+|.+|+|++|++||+|+|||+||++|||+|+|+++++|||||||||||||+|+++.+...+   
T Consensus       302 ~pk~~saapa~~R~~i~D~~R~ge~lslSP~gtlAAVTD~lgRVlLlDta~~ivvr~wKGYRDAsc~fv~vkek~~~---  378 (1244)
T KOG2727|consen  302 EPKTQSAAPASSRTCIKDYPRKGEKLSLSPSGTLAAVTDSLGRVLLLDTAALIVVRLWKGYRDASCVFVEVKEKKGK---  378 (1244)
T ss_pred             CCCCCcccccceeeccccCccccceeeeCCCccEEEEecccCcEEEEehhhhhHHHHhcccccceeEEEEcccccCC---
Confidence            77888766666678899999999999999999999999999999999999999999999999999999998776543   


Q ss_pred             ccccCCCCCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEecCCeEEeccccccCccCCCCC--CcC---cEEEEEeCCC
Q 012917          368 SAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGSSMASSP--YVP---LEVFLLNGDS  442 (453)
Q Consensus       368 ~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~~~Ll~~~~~~~g~~~~~~--~~~---~~~~lld~~~  442 (453)
                         .++.++++|+||||||||||+||||+||+||||+||||+|+++|+||+|+++|.+.+++  .+|   +.|+|+|| +
T Consensus       379 ---s~~~~sRvAlFLvIyAPRrgiLEVW~~q~gpRV~AfnV~Ks~~Llypny~~gG~nnsssqs~~plt~~~clf~Dp-~  454 (1244)
T KOG2727|consen  379 ---SEPVKSRVALFLVIYAPRRGILEVWQMQTGPRVLAFNVAKSSKLLYPNYRFGGNNNSSSQSCHPLTVFLCLFGDP-K  454 (1244)
T ss_pred             ---CccCcCceeEEEEEecccccHHHHHHhccCCeEEEEecCCccccccCcceecCCCCcCccccchhhhhhhhccCC-C
Confidence               35677889999999999999999999999999999999999999999999999776443  333   88999999 8


Q ss_pred             CceEEEeccC
Q 012917          443 GQLSVLNRSL  452 (453)
Q Consensus       443 g~l~~i~~~~  452 (453)
                      |++|+||+.+
T Consensus       455 Gsvk~In~PF  464 (1244)
T KOG2727|consen  455 GSVKMINRPF  464 (1244)
T ss_pred             CceEEeccce
Confidence            9999999853

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=97.87  E-value=0.019  Score=51.87  Aligned_cols=84  Identities=24%  Similarity=0.334  Sum_probs=61.1

Q ss_pred             CCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEE
Q 012917          305 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI  384 (453)
Q Consensus       305 D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI  384 (453)
                      .....+..+..+|+++.++++...|.|.++|+..+..++.+++..+    .+....-.+             +.  .+++
T Consensus       175 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~----~i~~~~~~~-------------~~--~~~~  235 (289)
T cd00200         175 GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN----GVNSVAFSP-------------DG--YLLA  235 (289)
T ss_pred             cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC----ceEEEEEcC-------------CC--cEEE
Confidence            3344677899999998888877799999999999999999987665    222211111             11  2455


Q ss_pred             EcCCCCeEEEeecCCCCeEEEEE
Q 012917          385 HAPRKGIIEVWQMRTGPRLLTIQ  407 (453)
Q Consensus       385 yaprRg~lEVW~~~~G~RV~a~~  407 (453)
                      .+...|.|.+|+++++..+..+.
T Consensus       236 ~~~~~~~i~i~~~~~~~~~~~~~  258 (289)
T cd00200         236 SGSEDGTIRVWDLRTGECVQTLS  258 (289)
T ss_pred             EEcCCCcEEEEEcCCceeEEEcc
Confidence            56679999999999887777666

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=97.80  E-value=0.00023  Score=75.41  Aligned_cols=52  Identities=21%  Similarity=0.324  Sum_probs=46.2

Q ss_pred             cCCCCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecc
Q 012917          296 RASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKG  347 (453)
Q Consensus       296 ~a~pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKG  347 (453)
                      ...|++.|.+++--.-++.-||+|+|.|.-+..|+|.++++.++.+++-.+|
T Consensus       441 ~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~  492 (524)
T KOG0273|consen  441 SGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG  492 (524)
T ss_pred             CCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC
Confidence            3456778999999999999999999999999999999999999998876654

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=96.98  E-value=0.042  Score=57.76  Aligned_cols=92  Identities=16%  Similarity=0.304  Sum_probs=73.8

Q ss_pred             cCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccc--eeeEEEEEecccccccccccCCCCCCccEE
Q 012917          304 KDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA--SCVFMEMLVNKDAATSSAYYAPVKSDYCLC  381 (453)
Q Consensus       304 ~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdA--qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~  381 (453)
                      .-++....++..|||++|+|.+.-.--|=|+|-.+|.-+-.++|+=+|  ||+|..     |              .+  
T Consensus       364 tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-----D--------------sR--  422 (480)
T KOG0271|consen  364 TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-----D--------------SR--  422 (480)
T ss_pred             hchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-----C--------------cc--
Confidence            344566789999999999999988899999999999999999999987  888873     2              12  


Q ss_pred             EEEEcCCCCeEEEeecCC----------CCeEEEEEecCCeEEec
Q 012917          382 LAIHAPRKGIIEVWQMRT----------GPRLLTIQCAKGSKILQ  416 (453)
Q Consensus       382 LvIyaprRg~lEVW~~~~----------G~RV~a~~v~~~~~Ll~  416 (453)
                      |++...++-.|+||++++          ..-|+++.-.+.+..+-
T Consensus       423 LlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~  467 (480)
T KOG0271|consen  423 LLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVA  467 (480)
T ss_pred             EEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceee
Confidence            778999999999999985          44566666555554443

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.95  E-value=0.016  Score=61.56  Aligned_cols=93  Identities=18%  Similarity=0.292  Sum_probs=78.5

Q ss_pred             CccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEc-CCceEEEEecccccceeeEEEEEecccccccccccCCCCCCc
Q 012917          300 LTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDT-QALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDY  378 (453)
Q Consensus       300 l~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~-~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~  378 (453)
                      +..+.+..+.+..++.+|++++++.+...+.|-++|+ ..+..+|..||+.+    ++-...=.+.              
T Consensus       196 ~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~----~v~~~~f~p~--------------  257 (456)
T KOG0266|consen  196 LRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHST----YVTSVAFSPD--------------  257 (456)
T ss_pred             hccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCC----ceEEEEecCC--------------
Confidence            3457889999999999999999999999999999999 77899999999999    6644322221              


Q ss_pred             cEEEEEEcCCCCeEEEeecCCCCeEEEEEecCC
Q 012917          379 CLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKG  411 (453)
Q Consensus       379 ~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~  411 (453)
                      . -|++-+-.++.|.||++++|..+..+..+.+
T Consensus       258 g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~  289 (456)
T KOG0266|consen  258 G-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSD  289 (456)
T ss_pred             C-CEEEEecCCCcEEEEeccCCeEEEeeeccCC
Confidence            1 2789999999999999999999999887765

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.89  E-value=0.011  Score=62.79  Aligned_cols=86  Identities=30%  Similarity=0.399  Sum_probs=68.5

Q ss_pred             CCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCc
Q 012917          299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDY  378 (453)
Q Consensus       299 pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~  378 (453)
                      .+..|..+.--..+++.+|.|++.+..+..|-|-++|+.++..+|++||+.+    .|....-..             +.
T Consensus       238 ~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~----~is~~~f~~-------------d~  300 (456)
T KOG0266|consen  238 NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD----GISGLAFSP-------------DG  300 (456)
T ss_pred             EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC----ceEEEEECC-------------CC
Confidence            3456888888889999999999999999999999999999999999999999    444322111             12


Q ss_pred             cEEEEEEcCCCCeEEEeecCCCCeE
Q 012917          379 CLCLAIHAPRKGIIEVWQMRTGPRL  403 (453)
Q Consensus       379 ~l~LvIyaprRg~lEVW~~~~G~RV  403 (453)
                      . +|+ -+-.+|.|.||++.+|.+.
T Consensus       301 ~-~l~-s~s~d~~i~vwd~~~~~~~  323 (456)
T KOG0266|consen  301 N-LLV-SASYDGTIRVWDLETGSKL  323 (456)
T ss_pred             C-EEE-EcCCCccEEEEECCCCcee
Confidence            2 233 3366999999999999965

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=96.88  E-value=0.48  Score=53.62  Aligned_cols=305  Identities=15%  Similarity=0.182  Sum_probs=155.5

Q ss_pred             eeeeccCcceeeeeecceEEEEeecCCC----CCc--eeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEec
Q 012917           34 NLLCALDMHTIALANRYQTVIINWADPE----GLV--AKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDL  107 (453)
Q Consensus        34 ~~~~sp~~~~la~A~~~~~v~~~w~~~~----~~~--~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte  107 (453)
                      .+..||+|..+|++.+..+-|  |..++    ++|  +--+-.+..  -+.||++.|.  .|..++++|-.+=.+|+|..
T Consensus       101 ~i~fSPng~~fav~~gn~lqi--w~~P~~~~~~~~pFvl~r~~~g~--fddi~si~Ws--~DSr~l~~gsrD~s~rl~~v  174 (893)
T KOG0291|consen  101 AIKFSPNGKFFAVGCGNLLQI--WHAPGEIKNEFNPFVLHRTYLGH--FDDITSIDWS--DDSRLLVTGSRDLSARLFGV  174 (893)
T ss_pred             eEEECCCCcEEEEEecceeEE--EecCcchhcccCcceEeeeecCC--ccceeEEEec--cCCceEEeccccceEEEEEe
Confidence            466799999999999998777  32222    233  222333322  3559999886  57799999999999999996


Q ss_pred             CCcEe---eecccCccceeEEEEeeccCCCCcCCCCCeEEEEeCCeEEEEeChhHHHHHHHHHHhc-cccccCCCCccCC
Q 012917          108 KGDLV---HRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDS-NSNFWDQKPKQRD  183 (453)
Q Consensus       108 ~G~LL---~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~~i~~idG~~L~~~L~~c~~~~-~~~~w~~~~~~~~  183 (453)
                      ++..=   +--.=|.++|+.--+-.         .+.+++.+..+..+..=..++.+.-+. +++. ..|       ..+
T Consensus       175 ~~~k~~~~~~l~gHkd~VvacfF~~---------~~~~l~tvskdG~l~~W~~~~~P~~~~-~~~kd~eg-------~~d  237 (893)
T KOG0291|consen  175 DGNKNLFTYALNGHKDYVVACFFGA---------NSLDLYTVSKDGALFVWTCDLRPPELD-KAEKDEEG-------SDD  237 (893)
T ss_pred             ccccccceEeccCCCcceEEEEecc---------CcceEEEEecCceEEEEEecCCCcccc-cccccccc-------ccc
Confidence            65432   22234677777644221         156788888887655555554422110 0000 000       001


Q ss_pred             CccccC---ccCCccc---eecccC-CCCceeeEEEeCcCCCCchhhcccccceEEEEeCCCc-eeEEEEeccCCCcchh
Q 012917          184 SEDLEN---SYERLPH---QLWNVS-KYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDS-VISAFRLSEDRSRSLV  255 (453)
Q Consensus       184 ~~~~~~---~~~~L~y---kKW~l~-~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P-~la~y~~~e~~~~s~~  255 (453)
                      .+..++   -..+.-|   +|.-|. ....+.-++|              +.-..++++|-+. .+..|.+-+   +.++
T Consensus       238 ~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~f--------------H~~t~~lvvgFssG~f~LyelP~---f~li  300 (893)
T KOG0291|consen  238 EEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAF--------------HKGTNLLVVGFSSGEFGLYELPD---FNLI  300 (893)
T ss_pred             ccccccchhhhcceEEEEEEeeeecccccceeeeec--------------cCCceEEEEEecCCeeEEEecCC---ceEE
Confidence            111111   1122222   222232 2222222222              0011133333222 122222211   1100


Q ss_pred             h-hhhhh--hhhHHHH-----------HHhhhhhccccCCCCCCCCCCCCCccccCCCCccccCCCCeeeEEEECCCCCE
Q 012917          256 G-AILSK--VVPATFS-----------TISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSL  321 (453)
Q Consensus       256 ~-a~~S~--va~av~S-----------~~~s~ak~~W~~~~~~~~~e~~p~~~~~a~pl~~l~D~~R~~~~i~lsP~~~l  321 (453)
                      - .-+|+  +..++++           ++.-+.-+-|.++.=    -.|.|.            +--...+++.||||++
T Consensus       301 h~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY----VlKQQg------------H~~~i~~l~YSpDgq~  364 (893)
T KOG0291|consen  301 HSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY----VLKQQG------------HSDRITSLAYSPDGQL  364 (893)
T ss_pred             EEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccce----eeeccc------------cccceeeEEECCCCcE
Confidence            0 00000  0000000           000011123444320    012221            1123678999999999


Q ss_pred             EEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeecCCCC
Q 012917          322 AAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGP  401 (453)
Q Consensus       322 aa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~  401 (453)
                      .|+.-..|.|=++|++.|..+--+-=+-.+--+.--..                   ....+.-+..+|.|..||+..++
T Consensus       365 iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-------------------~g~~llssSLDGtVRAwDlkRYr  425 (893)
T KOG0291|consen  365 IATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-------------------RGNVLLSSSLDGTVRAWDLKRYR  425 (893)
T ss_pred             EEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-------------------cCCEEEEeecCCeEEeeeecccc
Confidence            99999999999999999976655533333222211110                   11356788899999999999999


Q ss_pred             eEEEEEecCCeE
Q 012917          402 RLLTIQCAKGSK  413 (453)
Q Consensus       402 RV~a~~v~~~~~  413 (453)
                      .--+|+.+...+
T Consensus       426 NfRTft~P~p~Q  437 (893)
T KOG0291|consen  426 NFRTFTSPEPIQ  437 (893)
T ss_pred             eeeeecCCCcee
Confidence            888888665433

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=96.82  E-value=0.014  Score=52.76  Aligned_cols=84  Identities=23%  Similarity=0.300  Sum_probs=60.4

Q ss_pred             CCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEE
Q 012917          306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH  385 (453)
Q Consensus       306 ~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIy  385 (453)
                      ....+..+..+|+++++++++..|.|.++|+.++..++.+++..+    .+....-.+             +..  .++.
T Consensus       134 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~----~i~~~~~~~-------------~~~--~l~~  194 (289)
T cd00200         134 HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG----EVNSVAFSP-------------DGE--KLLS  194 (289)
T ss_pred             CCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCcc----ccceEEECC-------------CcC--EEEE
Confidence            344678899999999999998899999999999999999986654    221111111             011  2344


Q ss_pred             cCCCCeEEEeecCCCCeEEEEEe
Q 012917          386 APRKGIIEVWQMRTGPRLLTIQC  408 (453)
Q Consensus       386 aprRg~lEVW~~~~G~RV~a~~v  408 (453)
                      +-.+|.|.+|+++.+..+..+..
T Consensus       195 ~~~~~~i~i~d~~~~~~~~~~~~  217 (289)
T cd00200         195 SSSDGTIKLWDLSTGKCLGTLRG  217 (289)
T ss_pred             ecCCCcEEEEECCCCceecchhh
Confidence            44599999999999888777753

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=96.75  E-value=0.2  Score=56.14  Aligned_cols=92  Identities=20%  Similarity=0.319  Sum_probs=77.6

Q ss_pred             CCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccc--eeeEEEEEecccccccccccCCCCC
Q 012917          299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA--SCVFMEMLVNKDAATSSAYYAPVKS  376 (453)
Q Consensus       299 pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdA--qc~Wi~~~~~~~~~~~~~~~~~~k~  376 (453)
                      .+..|.-++|..-++.-||+.++.|++...+-|=++.+.+...+.-+.|++.|  .+.|+.    .           ++ 
T Consensus       497 l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~----~-----------~~-  560 (775)
T KOG0319|consen  497 LLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR----N-----------GK-  560 (775)
T ss_pred             EEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee----C-----------Cc-
Confidence            34579999999999999999999999999999999999999999999999997  455553    1           11 


Q ss_pred             CccEEEEEEcCCCCeEEEeecCCCCeEEEEEecCC
Q 012917          377 DYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKG  411 (453)
Q Consensus       377 ~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~  411 (453)
                           -.|.+.-+|+|++|++.++.++.+..++.+
T Consensus       561 -----qliS~~adGliKlWnikt~eC~~tlD~H~D  590 (775)
T KOG0319|consen  561 -----QLISAGADGLIKLWNIKTNECEMTLDAHND  590 (775)
T ss_pred             -----EEEeccCCCcEEEEeccchhhhhhhhhccc
Confidence                 348999999999999999877776665543

>PTZ00421 coronin; Provisional

Probab=96.64  E-value=0.049  Score=59.07  Aligned_cols=94  Identities=17%  Similarity=0.200  Sum_probs=72.3

Q ss_pred             CCccccCCCCeeeEEEECCCC-CEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCC
Q 012917          299 PLTCLKDHPRKGERLTLSPSG-SLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSD  377 (453)
Q Consensus       299 pl~~l~D~~R~~~~i~lsP~~-~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~  377 (453)
                      ++..|..+.+.+..|..+|++ .++|++...|.|.|+|+.++..++.++|+.+.    |....-..             +
T Consensus       117 ~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~----V~sla~sp-------------d  179 (493)
T PTZ00421        117 PIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQ----ITSLEWNL-------------D  179 (493)
T ss_pred             ceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCc----eEEEEEEC-------------C
Confidence            334566777889999999975 68888888999999999999999999998873    32211111             1


Q ss_pred             ccEEEEEEcCCCCeEEEeecCCCCeEEEEEecCC
Q 012917          378 YCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKG  411 (453)
Q Consensus       378 ~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~  411 (453)
                      .  -+++.+..+|.|.||++++|..+..+..+.+
T Consensus       180 G--~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~  211 (493)
T PTZ00421        180 G--SLLCTTSKDKKLNIIDPRDGTIVSSVEAHAS  211 (493)
T ss_pred             C--CEEEEecCCCEEEEEECCCCcEEEEEecCCC
Confidence            1  2557788999999999999999888876654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=96.52  E-value=0.015  Score=58.04  Aligned_cols=90  Identities=21%  Similarity=0.376  Sum_probs=71.0

Q ss_pred             eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCC
Q 012917          309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPR  388 (453)
Q Consensus       309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyapr  388 (453)
                      ++..+.++|...-+..+-..|-++-+|+.+|.+-|.+||+-|    .+......+.+               -=+.-..-
T Consensus       116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD----YvH~vv~R~~~---------------~qilsG~E  176 (325)
T KOG0649|consen  116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD----YVHSVVGRNAN---------------GQILSGAE  176 (325)
T ss_pred             ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc----eeeeeeecccC---------------cceeecCC
Confidence            567899999654344444788999999999999999999999    77665432211               12345667


Q ss_pred             CCeEEEeecCCCCeEEEEEecCCeEEecc
Q 012917          389 KGIIEVWQMRTGPRLLTIQCAKGSKILQP  417 (453)
Q Consensus       389 Rg~lEVW~~~~G~RV~a~~v~~~~~Ll~~  417 (453)
                      +|.+.||+++|++.|-++...|+-.+++|
T Consensus       177 DGtvRvWd~kt~k~v~~ie~yk~~~~lRp  205 (325)
T KOG0649|consen  177 DGTVRVWDTKTQKHVSMIEPYKNPNLLRP  205 (325)
T ss_pred             CccEEEEeccccceeEEeccccChhhcCc
Confidence            99999999999999999999999888885

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=96.22  E-value=0.0065  Score=64.53  Aligned_cols=50  Identities=24%  Similarity=0.306  Sum_probs=46.0

Q ss_pred             CCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceee
Q 012917          305 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCV  354 (453)
Q Consensus       305 D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~  354 (453)
                      ++.+++.++++||+|+|+|..+-.-+|.++|..++.-+..|||+|++=.+
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~  249 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSS  249 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceee
Confidence            77789999999999999999998888899999999999999999996443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=95.90  E-value=4.3  Score=46.17  Aligned_cols=92  Identities=18%  Similarity=0.191  Sum_probs=60.7

Q ss_pred             CeeeeccCcceeeeeecceEEEEeecCCCC--CceeEe-e--cCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEe-
Q 012917           33 PNLLCALDMHTIALANRYQTVIINWADPEG--LVAKIR-P--ELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-  106 (453)
Q Consensus        33 ~~~~~sp~~~~la~A~~~~~v~~~w~~~~~--~~~~~~-g--~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt-  106 (453)
                      +.++.+|+|++||.|-...-|- -|+....  ...... +  .+.  ....|+++.|-|.. ...++.|-.+|.|++|+ 
T Consensus       487 ~~i~fs~dg~~latgg~D~~I~-iwd~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~-~~~las~~~Dg~v~lWd~  562 (793)
T PLN00181        487 CAIGFDRDGEFFATAGVNKKIK-IFECESIIKDGRDIHYPVVELA--SRSKLSGICWNSYI-KSQVASSNFEGVVQVWDV  562 (793)
T ss_pred             EEEEECCCCCEEEEEeCCCEEE-EEECCcccccccccccceEEec--ccCceeeEEeccCC-CCEEEEEeCCCeEEEEEC
Confidence            4467789999988877665443 2432210  000000 0  111  13568899888763 44688888999999999 


Q ss_pred             cCCcEeeecccCccceeEEEEe
Q 012917          107 LKGDLVHRQLIHPGRILKLRVR  128 (453)
Q Consensus       107 e~G~LL~sQ~lh~~pV~~ik~r  128 (453)
                      ++|.++..+.-|.++|..+.+.
T Consensus       563 ~~~~~~~~~~~H~~~V~~l~~~  584 (793)
T PLN00181        563 ARSQLVTEMKEHEKRVWSIDYS  584 (793)
T ss_pred             CCCeEEEEecCCCCCEEEEEEc
Confidence            5688888777899999988864

>PTZ00420 coronin; Provisional

Probab=95.74  E-value=0.22  Score=55.08  Aligned_cols=129  Identities=14%  Similarity=0.160  Sum_probs=75.6

Q ss_pred             CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccc---eeeEEEEEecccccccccccCCCCCCccEEEEE
Q 012917          308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA---SCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI  384 (453)
Q Consensus       308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdA---qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI  384 (453)
                      ..+.+++.+|+|+++|++-..|.|.|+|+.++.+++.++|+...   .+-|+..... +              ...++..
T Consensus       168 ~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~-d--------------~~~IlTt  232 (568)
T PTZ00420        168 KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGG-D--------------DNYILST  232 (568)
T ss_pred             CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcC-C--------------CCEEEEE
Confidence            35789999999999999888899999999999999999998763   4556543211 1              1112222


Q ss_pred             EcCCC--CeEEEeecCC-CCeEEEEEecCCeEEeccccccCccC-CCCCCcCcEEEEEeCCCCceEEEecc
Q 012917          385 HAPRK--GIIEVWQMRT-GPRLLTIQCAKGSKILQPTYRFGSSM-ASSPYVPLEVFLLNGDSGQLSVLNRS  451 (453)
Q Consensus       385 yaprR--g~lEVW~~~~-G~RV~a~~v~~~~~Ll~~~~~~~g~~-~~~~~~~~~~~lld~~~g~l~~i~~~  451 (453)
                      -.-+.  +.|.||++++ +.-+..+....+.-.|.|.+-..... --.+-....|.+.+-.+|.++.+|.+
T Consensus       233 G~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~  303 (568)
T PTZ00420        233 GFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEY  303 (568)
T ss_pred             EcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeeccc
Confidence            22221  4799999996 44455555444322222222111000 00011234555555556666666643

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=95.59  E-value=0.039  Score=61.71  Aligned_cols=82  Identities=18%  Similarity=0.239  Sum_probs=64.5

Q ss_pred             CCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCc
Q 012917          299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDY  378 (453)
Q Consensus       299 pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~  378 (453)
                      ..+.|.=+++.+++++.||+|++.|..|..|+|++||+.+|..+...||+.+.= .=+...-                +.
T Consensus       569 ~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti-~SlsFS~----------------dg  631 (707)
T KOG0263|consen  569 SVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTI-YSLSFSR----------------DG  631 (707)
T ss_pred             EEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCce-eEEEEec----------------CC
Confidence            345578899999999999999999999999999999999999999999996632 2222211                11


Q ss_pred             cEEEEEEcCCCCeEEEeecCC
Q 012917          379 CLCLAIHAPRKGIIEVWQMRT  399 (453)
Q Consensus       379 ~l~LvIyaprRg~lEVW~~~~  399 (453)
                        -..+-+.-+..|.+||+..
T Consensus       632 --~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  632 --NVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             --CEEEecCCCCeEEEEEchh
Confidence              1345677799999999864

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=95.57  E-value=0.3  Score=55.56  Aligned_cols=299  Identities=18%  Similarity=0.178  Sum_probs=148.3

Q ss_pred             CcEEEEEEEEeCCcEEEEEeccccEEEEEecCCcEeeecccCc-cceeEEEEeeccCCCCcCCCCCeEEEEeCCe-E--E
Q 012917           77 EYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHP-GRILKLRVRGSRRDLTQDTAEEEVCVVMPGV-L--A  152 (453)
Q Consensus        77 e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~G~LL~sQ~lh~-~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~~-i--~  152 (453)
                      .+||+++=-|.-|  |||||+-+|-|.+|...-+.++.-.=|+ .+|..+-+|+-..        .-+.+--+.+ +  -
T Consensus       203 s~IT~ieqsPaLD--VVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~--------p~las~~~~G~m~~w  272 (910)
T KOG1539|consen  203 SRITAIEQSPALD--VVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGN--------PLLASGRSNGDMAFW  272 (910)
T ss_pred             cceeEeccCCcce--EEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCC--------eeEEeccCCceEEEE
Confidence            6788887665544  8999999999999996644444444465 9999999998553        2244444422 3  3


Q ss_pred             EEeChhHHHHHHHHH-HhccccccCCCCccCCCccccCccCCccceecccCCCCce--eeEEEeCcCCCCchhhcccccc
Q 012917          153 RFDGSEIQKMLQRWF-QDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPC--ADAAITGLMPPPLMEVQSSQRY  229 (453)
Q Consensus       153 ~idG~~L~~~L~~c~-~~~~~~~w~~~~~~~~~~~~~~~~~~L~ykKW~l~~~~~i--~Daa~~G~~~p~~~d~~s~~~~  229 (453)
                      -+|+-.|..++++.. ..+...     .-..+.+=+-...+.=+.+.|.++..+-.  -==.=-|...||.+=-.-+..-
T Consensus       273 DLe~kkl~~v~~nah~~sv~~~-----~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g  347 (910)
T KOG1539|consen  273 DLEKKKLINVTRNAHYGSVTGA-----TFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQG  347 (910)
T ss_pred             EcCCCeeeeeeeccccCCcccc-----eecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCc
Confidence            356666777776432 000000     00000000000012234567777633311  0000113333444322111222


Q ss_pred             eEEEEeCCCceeEEEEec-cCCCcchhhhhhhhhhhHH--HHH-------HhhhhhccccCCC------C---CCCCC--
Q 012917          230 FCAVTIGEDSVISAFRLS-EDRSRSLVGAILSKVVPAT--FST-------ISSLSKMIWRSEQ------S---PKKSE--  288 (453)
Q Consensus       230 ~~~i~vG~~P~la~y~~~-e~~~~s~~~a~~S~va~av--~S~-------~~s~ak~~W~~~~------~---~~~~e--  288 (453)
                      +.++.+|.++.+=.|.+. |..++++..-...+-++.+  .++       +..|+ ..|.++.      .   .+.+.  
T Consensus       348 ~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa-~~~~RE~~W~Nv~~~h~~~~~~~t  426 (910)
T KOG1539|consen  348 HFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFA-FENAREKEWDNVITAHKGKRSAYT  426 (910)
T ss_pred             EEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeee-cccchhhhhcceeEEecCcceEEE
Confidence            246777888755455322 2212211110011111111  000       00010 0111111      0   00000  


Q ss_pred             ----CCCCccccCCCCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccc
Q 012917          289 ----PKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDA  364 (453)
Q Consensus       289 ----~~p~~~~~a~pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~  364 (453)
                          .+..-.....| .-+.-..-...++++|++|+++.+.-+-|-|-+++.+.|+...-+=   |              
T Consensus       427 W~~~n~~~G~~~L~~-~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~---~--------------  488 (910)
T KOG1539|consen  427 WNFRNKTSGRHVLDP-KRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG---D--------------  488 (910)
T ss_pred             EeccCcccccEEecC-ccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccc---c--------------
Confidence                00000000000 0011133678999999999999999999999999999998765541   0              


Q ss_pred             cccccccCCCC---CCccEEEEEEcCCCCeEEEeecCCCCeEEEEEecCC
Q 012917          365 ATSSAYYAPVK---SDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKG  411 (453)
Q Consensus       365 ~~~~~~~~~~k---~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~  411 (453)
                        +..|.++..   .|..--++|-+...|+|.+|+...+--+..+.++-+
T Consensus       489 --~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~  536 (910)
T KOG1539|consen  489 --SPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSS  536 (910)
T ss_pred             --CccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCC
Confidence              001111110   011113789999999999999988887777776654

>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length

Probab=95.57  E-value=0.019  Score=38.73  Aligned_cols=27  Identities=37%  Similarity=0.455  Sum_probs=20.5

Q ss_pred             CCcEEEEEEEEeCCcEEEEEeccccEEEEEe
Q 012917           76 SEYITAIEWLVFEEMRALAVGTSRGYFLVYD  106 (453)
Q Consensus        76 ~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt  106 (453)
                      +|.|+++.   + ....|+|+||.+|||+||
T Consensus         1 gE~i~aia---~-g~~~vavaTS~~~lRifs   27 (27)
T PF12341_consen    1 GEEIEAIA---A-GDSWVAVATSAGYLRIFS   27 (27)
T ss_pred             CceEEEEE---c-cCCEEEEEeCCCeEEecC
Confidence            46676664   3 334799999999999997

The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.

>PTZ00421 coronin; Provisional

Probab=95.54  E-value=0.21  Score=54.28  Aligned_cols=81  Identities=19%  Similarity=0.288  Sum_probs=59.9

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccc---eeeEEEEEecccccccccccCCCCCCcc
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA---SCVFMEMLVNKDAATSSAYYAPVKSDYC  379 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdA---qc~Wi~~~~~~~~~~~~~~~~~~k~~~~  379 (453)
                      +......+.+|+.+|+|+++|++...|.|-++|+.++..++.++|+..+   .|.|..     +              ..
T Consensus       164 l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~-----~--------------~~  224 (493)
T PTZ00421        164 IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK-----R--------------KD  224 (493)
T ss_pred             EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC-----C--------------CC
Confidence            4445556889999999999999999999999999999999999988664   455542     0              01


Q ss_pred             EEEEEE--cCCCCeEEEeecCCCCe
Q 012917          380 LCLAIH--APRKGIIEVWQMRTGPR  402 (453)
Q Consensus       380 l~LvIy--aprRg~lEVW~~~~G~R  402 (453)
                      +++..-  .-.+|.|.+|++++..+
T Consensus       225 ~ivt~G~s~s~Dr~VklWDlr~~~~  249 (493)
T PTZ00421        225 LIITLGCSKSQQRQIMLWDTRKMAS  249 (493)
T ss_pred             eEEEEecCCCCCCeEEEEeCCCCCC
Confidence            122221  13478999999997653

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=95.50  E-value=0.18  Score=47.59  Aligned_cols=82  Identities=16%  Similarity=0.166  Sum_probs=56.0

Q ss_pred             eeEEEECCCCCEEEEE-cCCCcEEEEEcCCceEEEEec-ccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917          310 GERLTLSPSGSLAAIT-DSLGRILLLDTQALVVVRLWK-GYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP  387 (453)
Q Consensus       310 ~~~i~lsP~~~laa~t-DslGRV~LiD~~~~~ivRmWK-GyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap  387 (453)
                      ...|..+|+++++.++ ...++|.++|+.++.+++... |.+--.+.|    .+ +          .   .  +|++=+.
T Consensus       209 ~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~----~~-~----------g---~--~l~~~~~  268 (300)
T TIGR03866       209 PVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAF----TP-D----------E---K--YLLTTNG  268 (300)
T ss_pred             ccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEE----CC-C----------C---C--EEEEEcC
Confidence            4468899999875553 445799999999999987653 221111111    01 0          0   1  3444456


Q ss_pred             CCCeEEEeecCCCCeEEEEEecCC
Q 012917          388 RKGIIEVWQMRTGPRLLTIQCAKG  411 (453)
Q Consensus       388 rRg~lEVW~~~~G~RV~a~~v~~~  411 (453)
                      ..|.|.||+++++..+..+.++++
T Consensus       269 ~~~~i~v~d~~~~~~~~~~~~~~~  292 (300)
T TIGR03866       269 VSNDVSVIDVAALKVIKSIKVGRL  292 (300)
T ss_pred             CCCeEEEEECCCCcEEEEEEcccc
Confidence            789999999999999999998765

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=95.42  E-value=0.053  Score=60.65  Aligned_cols=92  Identities=20%  Similarity=0.333  Sum_probs=70.9

Q ss_pred             CCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCc
Q 012917          299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDY  378 (453)
Q Consensus       299 pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~  378 (453)
                      |++.|-.+--....+..-||..|.|+--+.-+|=+||+.+|..||++-|++.    =|.+..-.+          .    
T Consensus       527 PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~----~V~al~~Sp----------~----  588 (707)
T KOG0263|consen  527 PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG----PVTALAFSP----------C----  588 (707)
T ss_pred             chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC----ceEEEEEcC----------C----
Confidence            4455555556667899999999999998999999999999999999999877    333332211          1    


Q ss_pred             cEEEEEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917          379 CLCLAIHAPRKGIIEVWQMRTGPRLLTIQCA  409 (453)
Q Consensus       379 ~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~  409 (453)
                      ..||+ -+--.|+|.||++.+|.+|..+.-+
T Consensus       589 Gr~La-Sg~ed~~I~iWDl~~~~~v~~l~~H  618 (707)
T KOG0263|consen  589 GRYLA-SGDEDGLIKIWDLANGSLVKQLKGH  618 (707)
T ss_pred             CceEe-ecccCCcEEEEEcCCCcchhhhhcc
Confidence            11443 5667999999999999999888755

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=95.17  E-value=0.1  Score=55.04  Aligned_cols=98  Identities=20%  Similarity=0.287  Sum_probs=77.4

Q ss_pred             CCCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCc-eEEEEecccccceeeEEEEEecccccccccccCCCCC
Q 012917          298 SPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQAL-VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKS  376 (453)
Q Consensus       298 ~pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~-~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~  376 (453)
                      +|+....-++--..+|+.||||+++|..--.|-|.|+|-.+| ++.|-.+|++-    ||....=.+.     |..|.  
T Consensus       148 Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K----~It~Lawep~-----hl~p~--  216 (480)
T KOG0271|consen  148 TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKK----WITALAWEPL-----HLVPP--  216 (480)
T ss_pred             CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCccc----ceeEEeeccc-----ccCCC--
Confidence            566777788888999999999999999999999999998776 57799999999    9987643321     11111  


Q ss_pred             CccEEEEEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917          377 DYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCA  409 (453)
Q Consensus       377 ~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~  409 (453)
                       .+  ++-.+.++|.+.||++..|..+....-+
T Consensus       217 -~r--~las~skDg~vrIWd~~~~~~~~~lsgH  246 (480)
T KOG0271|consen  217 -CR--RLASSSKDGSVRIWDTKLGTCVRTLSGH  246 (480)
T ss_pred             -cc--ceecccCCCCEEEEEccCceEEEEeccC
Confidence             12  4567888999999999999988877644

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=95.02  E-value=0.36  Score=49.48  Aligned_cols=85  Identities=22%  Similarity=0.384  Sum_probs=66.1

Q ss_pred             CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917          308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP  387 (453)
Q Consensus       308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap  387 (453)
                      -+-+.|.-||||++..++++-+-+.|+|.-+|.++.-+-+|+.+.--=+++.=..|              .  -+|+-.-
T Consensus       188 ~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPd--------------s--~Fvl~gs  251 (311)
T KOG1446|consen  188 AEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPD--------------S--KFVLSGS  251 (311)
T ss_pred             cceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCC--------------C--cEEEEec
Confidence            34577899999999999999999999999999999999999886611122111111              1  1456666


Q ss_pred             CCCeEEEeecCCCCeEEEEEe
Q 012917          388 RKGIIEVWQMRTGPRLLTIQC  408 (453)
Q Consensus       388 rRg~lEVW~~~~G~RV~a~~v  408 (453)
                      -+|.|-||++.+|.+|+.++-
T Consensus       252 ~dg~i~vw~~~tg~~v~~~~~  272 (311)
T KOG1446|consen  252 DDGTIHVWNLETGKKVAVLRG  272 (311)
T ss_pred             CCCcEEEEEcCCCcEeeEecC
Confidence            789999999999999999984

>PTZ00420 coronin; Provisional

Probab=94.96  E-value=0.28  Score=54.35  Aligned_cols=92  Identities=10%  Similarity=-0.061  Sum_probs=64.7

Q ss_pred             ccccCCCCeeeEEEECCCCCE-EEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCcc
Q 012917          301 TCLKDHPRKGERLTLSPSGSL-AAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYC  379 (453)
Q Consensus       301 ~~l~D~~R~~~~i~lsP~~~l-aa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~  379 (453)
                      ..|..+.+.+..|+.+|++.. +|++...|.|.|+|+.++..+..++..  ..+.-+...   .             +..
T Consensus       119 ~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~--~~V~Slsws---p-------------dG~  180 (568)
T PTZ00420        119 CILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP--KKLSSLKWN---I-------------KGN  180 (568)
T ss_pred             EEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC--CcEEEEEEC---C-------------CCC
Confidence            345666788999999998865 466677899999999999877766532  122111110   0             111


Q ss_pred             EEEEEEcCCCCeEEEeecCCCCeEEEEEecCCe
Q 012917          380 LCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGS  412 (453)
Q Consensus       380 l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~~  412 (453)
                        +++-+-+++.|.||++++|..+..+..+.+.
T Consensus       181 --lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~  211 (568)
T PTZ00420        181 --LLSGTCVGKHMHIIDPRKQEIASSFHIHDGG  211 (568)
T ss_pred             --EEEEEecCCEEEEEECCCCcEEEEEecccCC
Confidence              2344667899999999999999988877663

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=94.88  E-value=0.84  Score=43.07  Aligned_cols=78  Identities=19%  Similarity=0.210  Sum_probs=53.3

Q ss_pred             eEEEECCCCCEE-EEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCC
Q 012917          311 ERLTLSPSGSLA-AITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRK  389 (453)
Q Consensus       311 ~~i~lsP~~~la-a~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprR  389 (453)
                      ..+.++|+|+.+ ++....++|.++|+.++.+++.+....+.  ..+... + +             ..  +|++-....
T Consensus        34 ~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~--~~~~~~-~-~-------------g~--~l~~~~~~~   94 (300)
T TIGR03866        34 RGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP--ELFALH-P-N-------------GK--ILYIANEDD   94 (300)
T ss_pred             CceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc--cEEEEC-C-C-------------CC--EEEEEcCCC
Confidence            468899999865 55567899999999999998877653331  122111 1 1             01  344555677


Q ss_pred             CeEEEeecCCCCeEEEEE
Q 012917          390 GIIEVWQMRTGPRLLTIQ  407 (453)
Q Consensus       390 g~lEVW~~~~G~RV~a~~  407 (453)
                      +.|.+|+++++..+..+.
T Consensus        95 ~~l~~~d~~~~~~~~~~~  112 (300)
T TIGR03866        95 NLVTVIDIETRKVLAEIP  112 (300)
T ss_pred             CeEEEEECCCCeEEeEee
Confidence            899999999887776665

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=94.84  E-value=0.78  Score=48.16  Aligned_cols=145  Identities=19%  Similarity=0.154  Sum_probs=92.0

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEeccc-------cc-------cc-
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKD-------AA-------TS-  367 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~-------~~-------~~-  367 (453)
                      +.-++-.+..+.-|-+|.|.|+.|--|.|++++.+++...+..- |-=..+-|+.-.....       .+       .+ 
T Consensus       102 ltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~  180 (399)
T KOG0296|consen  102 LTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ  180 (399)
T ss_pred             ecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCc
Confidence            55566668889999999999999999999999999999877654 4555666765543221       00       00 


Q ss_pred             ---ccccCCC------C--CCccEEEEEEcCCCCeEEEeecCCCCeEEEEEecCCeEEeccccccCccCCCCCCcCcEEE
Q 012917          368 ---SAYYAPV------K--SDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGSSMASSPYVPLEVF  436 (453)
Q Consensus       368 ---~~~~~~~------k--~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~~~Ll~~~~~~~g~~~~~~~~~~~~~  436 (453)
                         +..+++.      +  .+.-..+.-|-  +|+|.+|++.+|+-+..++-..+.-+-....+..|...-+.-..-++|
T Consensus       181 ~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~--dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~  258 (399)
T KOG0296|consen  181 ALCKVMSGHNSPCTCGEFIPDGKRILTGYD--DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVAC  258 (399)
T ss_pred             ceeeEecCCCCCcccccccCCCceEEEEec--CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEE
Confidence               0000000      0  11222456666  999999999999998888855533333333322221111113357889


Q ss_pred             EEeCCCCceEEEec
Q 012917          437 LLNGDSGQLSVLNR  450 (453)
Q Consensus       437 lld~~~g~l~~i~~  450 (453)
                      +++..+|.+...|+
T Consensus       259 ~~~~~sgKVv~~~n  272 (399)
T KOG0296|consen  259 GVNNGSGKVVNCNN  272 (399)
T ss_pred             EEccccceEEEecC
Confidence            99988887776665

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=93.66  E-value=0.1  Score=55.28  Aligned_cols=96  Identities=21%  Similarity=0.291  Sum_probs=70.4

Q ss_pred             eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCC
Q 012917          309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPR  388 (453)
Q Consensus       309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyapr  388 (453)
                      .+..++.||+-..++.+-..|+|.++|.....-=|+..|+     +|-.....-.         |.|     -|+.-+.+
T Consensus       182 aIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GH-----gwdVksvdWH---------P~k-----gLiasgsk  242 (464)
T KOG0284|consen  182 AIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGH-----GWDVKSVDWH---------PTK-----GLIASGSK  242 (464)
T ss_pred             hhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccC-----CCCcceeccC---------Ccc-----ceeEEccC
Confidence            4567899998777777777899999999988887777665     2322211111         112     48899999


Q ss_pred             CCeEEEeecCCCCeEEEEEecCCeEE---eccccccCc
Q 012917          389 KGIIEVWQMRTGPRLLTIQCAKGSKI---LQPTYRFGS  423 (453)
Q Consensus       389 Rg~lEVW~~~~G~RV~a~~v~~~~~L---l~~~~~~~g  423 (453)
                      +..|++||.|+|.++++.+.+|++.|   ++++.+++-
T Consensus       243 DnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Ll  280 (464)
T KOG0284|consen  243 DNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLL  280 (464)
T ss_pred             CceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeE
Confidence            99999999999999999999998654   344444443

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=93.55  E-value=0.34  Score=51.52  Aligned_cols=92  Identities=23%  Similarity=0.324  Sum_probs=68.7

Q ss_pred             CCeeeEEEECCCCCEEEEE--cCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEE
Q 012917          307 PRKGERLTLSPSGSLAAIT--DSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI  384 (453)
Q Consensus       307 ~R~~~~i~lsP~~~laa~t--DslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI  384 (453)
                      .+...+|+--|+|.||+..  |++|||  +|+.+|.-|-..-|+=+.=. =+..   .               ..-|.+.
T Consensus       303 s~~v~~iaf~~DGSL~~tGGlD~~~Rv--WDlRtgr~im~L~gH~k~I~-~V~f---s---------------PNGy~lA  361 (459)
T KOG0272|consen  303 SKGVFSIAFQPDGSLAATGGLDSLGRV--WDLRTGRCIMFLAGHIKEIL-SVAF---S---------------PNGYHLA  361 (459)
T ss_pred             ccccceeEecCCCceeeccCccchhhe--eecccCcEEEEeccccccee-eEeE---C---------------CCceEEe
Confidence            4567789999999999994  999996  89999999998888766211 1111   0               1227888


Q ss_pred             EcCCCCeEEEeecCCCCeEEEEEec------------CCeEEecccc
Q 012917          385 HAPRKGIIEVWQMRTGPRLLTIQCA------------KGSKILQPTY  419 (453)
Q Consensus       385 yaprRg~lEVW~~~~G~RV~a~~v~------------~~~~Ll~~~~  419 (453)
                      -...++...||++|--.-++++..+            .|+.|+.++|
T Consensus       362 Tgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy  408 (459)
T KOG0272|consen  362 TGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASY  408 (459)
T ss_pred             ecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEccc
Confidence            8899999999999987777777644            3566666555

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=93.51  E-value=0.08  Score=57.35  Aligned_cols=77  Identities=26%  Similarity=0.393  Sum_probs=56.9

Q ss_pred             CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEeccccc-ceeeEEEEEecccccccccccCCCCCCccEEEEEEc
Q 012917          308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD-ASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA  386 (453)
Q Consensus       308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRd-Aqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya  386 (453)
                      -.+..+++|||-+++-.+=+.|-|.++|+.+-.+||-+|||-| |.|-=|  .  .+ +               .-.--.
T Consensus       510 paCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdi--s--~d-G---------------tklWTG  569 (705)
T KOG0639|consen  510 PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI--S--KD-G---------------TKLWTG  569 (705)
T ss_pred             hhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEe--c--CC-C---------------ceeecC
Confidence            3456789999999888888889999999999999999999998 233211  1  11 0               011224


Q ss_pred             CCCCeEEEeecCCCCeEE
Q 012917          387 PRKGIIEVWQMRTGPRLL  404 (453)
Q Consensus       387 prRg~lEVW~~~~G~RV~  404 (453)
                      ..++.|.-|++|+|..+.
T Consensus       570 GlDntvRcWDlregrqlq  587 (705)
T KOG0639|consen  570 GLDNTVRCWDLREGRQLQ  587 (705)
T ss_pred             CCccceeehhhhhhhhhh
Confidence            458899999999988764

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=93.44  E-value=0.73  Score=51.91  Aligned_cols=100  Identities=15%  Similarity=0.230  Sum_probs=73.5

Q ss_pred             CCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEE
Q 012917          306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH  385 (453)
Q Consensus       306 ~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIy  385 (453)
                      +...+.+++++|+.+|+|+.--.--.=++|+.++.++-+.+|+|.-  -|-.-+...              |   -++--
T Consensus       462 HdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RG--vw~V~Fs~~--------------d---q~laT  522 (775)
T KOG0319|consen  462 HDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRG--VWCVSFSKN--------------D---QLLAT  522 (775)
T ss_pred             hcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccc--eEEEEeccc--------------c---ceeEe
Confidence            4467899999999999999866666667777799999999999982  133222222              2   25667


Q ss_pred             cCCCCeEEEeecCCCCeEEEEEecCC----eEEeccccccCcc
Q 012917          386 APRKGIIEVWQMRTGPRLLTIQCAKG----SKILQPTYRFGSS  424 (453)
Q Consensus       386 aprRg~lEVW~~~~G~RV~a~~v~~~----~~Ll~~~~~~~g~  424 (453)
                      +.-+..|+||.+.++.++-+|.-+..    +..+.++.++.++
T Consensus       523 ~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~  565 (775)
T KOG0319|consen  523 CSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISA  565 (775)
T ss_pred             ccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEec
Confidence            77899999999999999999985554    2334445555554

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=92.69  E-value=0.36  Score=49.52  Aligned_cols=74  Identities=19%  Similarity=0.206  Sum_probs=60.2

Q ss_pred             EEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCe
Q 012917          312 RLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGI  391 (453)
Q Consensus       312 ~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~  391 (453)
                      .+.-.++++-+..+-..-||..+|.++|..+|=.||+-+    ++....+              .++.+.||.-+.-+|.
T Consensus        95 ~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~----~vNs~~p--------------~rrg~~lv~SgsdD~t  156 (338)
T KOG0265|consen   95 ELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTS----FVNSLDP--------------SRRGPQLVCSGSDDGT  156 (338)
T ss_pred             eeeeccCCCEEEEecCCceEEEEecccceeeehhccccc----eeeecCc--------------cccCCeEEEecCCCce
Confidence            345567777777777888999999999999999999998    7876543              2457799999999999


Q ss_pred             EEEeecCCCCeE
Q 012917          392 IEVWQMRTGPRL  403 (453)
Q Consensus       392 lEVW~~~~G~RV  403 (453)
                      +.|||||....+
T Consensus       157 ~kl~D~R~k~~~  168 (338)
T KOG0265|consen  157 LKLWDIRKKEAI  168 (338)
T ss_pred             EEEEeecccchh
Confidence            999999954433

>KOG4328 consensus WD40 protein [Function unknown]

Probab=92.58  E-value=12  Score=40.52  Aligned_cols=81  Identities=19%  Similarity=0.338  Sum_probs=59.3

Q ss_pred             CCCcEEEEEEEEeCCcEEEEEeccccEEEEEec-------CCcEeeecccCccceeEEEEeeccCCCCcCCCCCeEEEEe
Q 012917           75 ASEYITAIEWLVFEEMRALAVGTSRGYFLVYDL-------KGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVM  147 (453)
Q Consensus        75 ~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte-------~G~LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ily  147 (453)
                      -.++||++.|.|-..-..|+||=..|.|-|..-       .|..+|  .-|-.||-.|+|.-.-.       +.-++--|
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f--~~hs~~Vs~l~F~P~n~-------s~i~ssSy  255 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF--TPHSGPVSGLKFSPANT-------SQIYSSSY  255 (498)
T ss_pred             cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEe--ccCCccccceEecCCCh-------hheeeecc
Confidence            358999999999988899999999999999986       355555  45678999999765432       44466667


Q ss_pred             CCeE--EEEeChhHHHHHH
Q 012917          148 PGVL--ARFDGSEIQKMLQ  164 (453)
Q Consensus       148 p~~i--~~idG~~L~~~L~  164 (453)
                      .+.|  .-+.+.-+..+|+
T Consensus       256 DGtiR~~D~~~~i~e~v~s  274 (498)
T KOG4328|consen  256 DGTIRLQDFEGNISEEVLS  274 (498)
T ss_pred             CceeeeeeecchhhHHHhh
Confidence            7766  3345555554444

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=92.55  E-value=0.48  Score=47.51  Aligned_cols=84  Identities=14%  Similarity=0.141  Sum_probs=66.2

Q ss_pred             CCCCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCC
Q 012917          297 ASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKS  376 (453)
Q Consensus       297 a~pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~  376 (453)
                      .+.+....-..+++....++.++.-+|..-..--|.++|+.+|.++|=|.|+ +||+-=+...|+.              
T Consensus        49 g~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH-~aqVNtV~fNees--------------  113 (307)
T KOG0316|consen   49 GALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGH-LAQVNTVRFNEES--------------  113 (307)
T ss_pred             cceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccc-cceeeEEEecCcc--------------
Confidence            3455667788899999999999877777767778999999999999999998 6777766654331              


Q ss_pred             CccEEEEEEcCCCCeEEEeecCC
Q 012917          377 DYCLCLAIHAPRKGIIEVWQMRT  399 (453)
Q Consensus       377 ~~~l~LvIyaprRg~lEVW~~~~  399 (453)
                          -.|..+.-+..+.+|++|.
T Consensus       114 ----SVv~SgsfD~s~r~wDCRS  132 (307)
T KOG0316|consen  114 ----SVVASGSFDSSVRLWDCRS  132 (307)
T ss_pred             ----eEEEeccccceeEEEEccc
Confidence                2566777788889999875

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=92.33  E-value=0.98  Score=48.38  Aligned_cols=83  Identities=16%  Similarity=0.200  Sum_probs=55.4

Q ss_pred             EeecCCCCCCCcEEEEEEEEe----CCcEEEEEeccccEEEEEecCC------cEeeecccCccceeEEEEeeccCCCCc
Q 012917           67 IRPELSPIASEYITAIEWLVF----EEMRALAVGTSRGYFLVYDLKG------DLVHRQLIHPGRILKLRVRGSRRDLTQ  136 (453)
Q Consensus        67 ~~g~l~~~~~e~ITs~~~lp~----~dw~~I~VG~ssG~vrfyte~G------~LL~sQ~lh~~pV~~ik~r~~~~~~~~  136 (453)
                      |+-.+..+|.--.-++++-++    .+--.|+||--+|++|+|.+++      +||+...+ ..||++|.+..=..    
T Consensus        10 Wst~~~~~e~~d~~~l~v~~~~~~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l-~~PILqv~~G~F~s----   84 (418)
T PF14727_consen   10 WSTKCGENEEFDQGSLCVGNLDNSPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQL-KDPILQVECGKFVS----   84 (418)
T ss_pred             eeccCCCCCcCcCceEEEEcccCCCCCccEEEEeccccEEEEEccCCCCCCCccEEEEEec-CCcEEEEEeccccC----
Confidence            444453322222345555555    2446999999999999999653      47777666 58999999876322    


Q ss_pred             CCCCCeEEEEeCCeEEEE
Q 012917          137 DTAEEEVCVVMPGVLARF  154 (453)
Q Consensus       137 ~~~~eel~Ilyp~~i~~i  154 (453)
                      ......|.||.|..++..
T Consensus        85 ~~~~~~LaVLhP~kl~vY  102 (418)
T PF14727_consen   85 GSEDLQLAVLHPRKLSVY  102 (418)
T ss_pred             CCCcceEEEecCCEEEEE
Confidence            123568999999987543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=92.20  E-value=1.2  Score=50.51  Aligned_cols=82  Identities=17%  Similarity=0.186  Sum_probs=61.2

Q ss_pred             eeeEEEECC-CCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917          309 KGERLTLSP-SGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP  387 (453)
Q Consensus       309 ~~~~i~lsP-~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap  387 (453)
                      ...+++.+| +++++|+++..|.|.|+|+.++..++.++|+.+.    |....-.+            .+.  -+++-+.
T Consensus       534 ~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~----V~~l~~~p------------~~~--~~L~Sgs  595 (793)
T PLN00181        534 KLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKR----VWSIDYSS------------ADP--TLLASGS  595 (793)
T ss_pred             ceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCC----EEEEEEcC------------CCC--CEEEEEc
Confidence            456778877 5789999999999999999999999999999873    22111100            011  1456667


Q ss_pred             CCCeEEEeecCCCCeEEEEEe
Q 012917          388 RKGIIEVWQMRTGPRLLTIQC  408 (453)
Q Consensus       388 rRg~lEVW~~~~G~RV~a~~v  408 (453)
                      .+|.|.||+++++..+..+..
T Consensus       596 ~Dg~v~iWd~~~~~~~~~~~~  616 (793)
T PLN00181        596 DDGSVKLWSINQGVSIGTIKT  616 (793)
T ss_pred             CCCEEEEEECCCCcEEEEEec
Confidence            799999999999988877764

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=92.19  E-value=0.87  Score=46.01  Aligned_cols=90  Identities=18%  Similarity=0.213  Sum_probs=64.3

Q ss_pred             CCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCc-eEEEEecccccceeeEEEEEecccccccccccCCCCCC
Q 012917          299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQAL-VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSD  377 (453)
Q Consensus       299 pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~-~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~  377 (453)
                      |+.-|.-..|++.+.-+||+++|.|++-+.--|-++++.+. ..=+..+|.-.    |+.--.=.             .+
T Consensus       207 P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~r----WvWdc~FS-------------~d  269 (311)
T KOG0315|consen  207 PVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQR----WVWDCAFS-------------AD  269 (311)
T ss_pred             EhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCc----eEEeeeec-------------cC
Confidence            33447777899999999999999999999999999999987 22234444432    87532211             01


Q ss_pred             ccEEEEEEcCCCCeEEEeecCCCCeEEEEE
Q 012917          378 YCLCLAIHAPRKGIIEVWQMRTGPRLLTIQ  407 (453)
Q Consensus       378 ~~l~LvIyaprRg~lEVW~~~~G~RV~a~~  407 (453)
                       .-|||- +..|+...+|++..|+.|....
T Consensus       270 -g~YlvT-assd~~~rlW~~~~~k~v~qy~  297 (311)
T KOG0315|consen  270 -GEYLVT-ASSDHTARLWDLSAGKEVRQYQ  297 (311)
T ss_pred             -ccEEEe-cCCCCceeecccccCceeeecC
Confidence             115655 5557999999999999876543

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=92.19  E-value=18  Score=38.38  Aligned_cols=108  Identities=10%  Similarity=0.076  Sum_probs=68.3

Q ss_pred             eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccc--eeeEEEEEecccccccccccCCCCCCccEEEEEEc
Q 012917          309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA--SCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA  386 (453)
Q Consensus       309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdA--qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya  386 (453)
                      -...|.+.-+|++.|..++.=+|-++=++++...-+..++--.  -.+|....+..+    .....+. .+.+.+| .-+
T Consensus       237 wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~----i~~at~~-~~~~~~l-~s~  310 (406)
T KOG0295|consen  237 WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPS----ISEATGS-TNGGQVL-GSG  310 (406)
T ss_pred             hEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcc----hhhccCC-CCCccEE-Eee
Confidence            5667888889999999999999999999999554444333221  123543322111    0011111 1123343 568


Q ss_pred             CCCCeEEEeecCCCCeEEEEEecCC---eEEeccccccC
Q 012917          387 PRKGIIEVWQMRTGPRLLTIQCAKG---SKILQPTYRFG  422 (453)
Q Consensus       387 prRg~lEVW~~~~G~RV~a~~v~~~---~~Ll~~~~~~~  422 (453)
                      .|+++|++|+|++|..+.++--+.+   +.++.|+-++.
T Consensus       311 SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi  349 (406)
T KOG0295|consen  311 SRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYI  349 (406)
T ss_pred             cccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEE
Confidence            8999999999999999988875543   44555544443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=92.17  E-value=2.9  Score=43.82  Aligned_cols=76  Identities=17%  Similarity=0.158  Sum_probs=58.6

Q ss_pred             CC-CCCEEEEEcCC-----CcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC--
Q 012917          316 SP-SGSLAAITDSL-----GRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP--  387 (453)
Q Consensus       316 sP-~~~laa~tDsl-----GRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap--  387 (453)
                      .| +++++-++|.-     |||.+||..++.++.|+..-+..+.  + +  ..|             ..  +|.+=.+  
T Consensus         8 ~~~~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~~--~-~--spD-------------g~--~lyva~~~~   67 (352)
T TIGR02658         8 PASDARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPNP--V-V--ASD-------------GS--FFAHASTVY   67 (352)
T ss_pred             CCCCCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCce--e-E--CCC-------------CC--EEEEEeccc
Confidence            44 77899999986     9999999999999999986665553  2 1  111             11  3556666  


Q ss_pred             -------CCCeEEEeecCCCCeEEEEEecCC
Q 012917          388 -------RKGIIEVWQMRTGPRLLTIQCAKG  411 (453)
Q Consensus       388 -------rRg~lEVW~~~~G~RV~a~~v~~~  411 (453)
                             |.+.|+||+.+++.-+.-+.+++.
T Consensus        68 ~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~   98 (352)
T TIGR02658        68 SRIARGKRTDYVEVIDPQTHLPIADIELPEG   98 (352)
T ss_pred             cccccCCCCCEEEEEECccCcEEeEEccCCC
Confidence                   889999999999999988887655

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=91.98  E-value=2  Score=43.92  Aligned_cols=99  Identities=12%  Similarity=0.183  Sum_probs=78.5

Q ss_pred             cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEeccc-ccceeeEEEEEecccccccccccCCCCCCccE
Q 012917          302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGY-RDASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (453)
Q Consensus       302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGy-RdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (453)
                      -|.-+.+...+++++|+++-++..-..--|.|+|+-..+...|=.+. ||    |+....-.+          ++..   
T Consensus       100 ~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~----WVscvrfsP----------~~~~---  162 (315)
T KOG0279|consen  100 RFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHRE----WVSCVRFSP----------NESN---  162 (315)
T ss_pred             EEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcC----cEEEEEEcC----------CCCC---
Confidence            37777899999999999999999888889999999999999999998 99    998754322          2211   


Q ss_pred             EEEEEcCCCCeEEEeecCCCCe----------EEEEEecCCeEEecc
Q 012917          381 CLAIHAPRKGIIEVWQMRTGPR----------LLTIQCAKGSKILQP  417 (453)
Q Consensus       381 ~LvIyaprRg~lEVW~~~~G~R----------V~a~~v~~~~~Ll~~  417 (453)
                      ..++-+.-++.|+||++++.+-          |-+++|++.+-|.-.
T Consensus       163 p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcas  209 (315)
T KOG0279|consen  163 PIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCAS  209 (315)
T ss_pred             cEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEec
Confidence            3678899999999999997654          445566666655544

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=91.23  E-value=0.39  Score=32.73  Aligned_cols=36  Identities=25%  Similarity=0.389  Sum_probs=32.5

Q ss_pred             CccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEE
Q 012917          300 LTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLD  335 (453)
Q Consensus       300 l~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD  335 (453)
                      +..|......+.+|+.+|+++++|++...|.|.++|
T Consensus         4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            345788889999999999999999999999999987

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=90.94  E-value=1.2  Score=49.86  Aligned_cols=87  Identities=17%  Similarity=0.245  Sum_probs=71.4

Q ss_pred             CCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEc
Q 012917          307 PRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA  386 (453)
Q Consensus       307 ~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya  386 (453)
                      +-.+-+++..|+|..++..+.-+-+.|+|..++.=+-=.+|+||    -+.+..-.+.+             .  =++-+
T Consensus       171 k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTd----NVr~ll~~dDG-------------t--~~ls~  231 (735)
T KOG0308|consen  171 KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTD----NVRVLLVNDDG-------------T--RLLSA  231 (735)
T ss_pred             ccceeeeecCCcceEEEecCcccceEEeccccccceeeeecccc----ceEEEEEcCCC-------------C--eEeec
Confidence            33477899999999999999999999999998865555569999    77776554422             1  23789


Q ss_pred             CCCCeEEEeecCCCCeEEEEEecCCe
Q 012917          387 PRKGIIEVWQMRTGPRLLTIQCAKGS  412 (453)
Q Consensus       387 prRg~lEVW~~~~G~RV~a~~v~~~~  412 (453)
                      ..+|.|.+|++.+.++++++.+++.+
T Consensus       232 sSDgtIrlWdLgqQrCl~T~~vH~e~  257 (735)
T KOG0308|consen  232 SSDGTIRLWDLGQQRCLATYIVHKEG  257 (735)
T ss_pred             CCCceEEeeeccccceeeeEEeccCc
Confidence            99999999999999999999999763

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=90.83  E-value=0.99  Score=51.93  Aligned_cols=108  Identities=19%  Similarity=0.131  Sum_probs=67.0

Q ss_pred             eeeeeeecccc-----------cccCCCCCcccCCCeee---eccCcceeee-eecceEEE------EeecCCCCCceeE
Q 012917            9 EVGSIACTDLS-----------DLGAGKEGWLVNDPNLL---CALDMHTIAL-ANRYQTVI------INWADPEGLVAKI   67 (453)
Q Consensus         9 ~~~~~~~~~~~-----------~~g~~~~~wl~~~~~~~---~sp~~~~la~-A~~~~~v~------~~w~~~~~~~~~~   67 (453)
                      ++|||-|-+-+           +.|.-++.=+.|.-.+-   +|-.|-++|- +.++|...      ..|++.    -.|
T Consensus       442 ~vGiI~t~~~e~~~ssIdVeFHD~sihr~~H~~d~~~y~lA~ls~~g~llAsp~s~sk~~sil~~~h~~w~s~----seW  517 (933)
T KOG1274|consen  442 EVGIIRTVVNEANDSSIDVEFHDTSIHRAYHFSDLFGYELADLSEKGTLLASPESESKLGSILYRAHFSWDSH----SEW  517 (933)
T ss_pred             ccceEEEEeccCcCceEEEEEeccCccceeeeeccccceeeeccccceEEecccccCCcceEEEEcccCcccc----cce
Confidence            56888854322           23433555555533332   3344443332 33444443      237654    357


Q ss_pred             eecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEecCCcEeeecccCccceeEEEE
Q 012917           68 RPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRV  127 (453)
Q Consensus        68 ~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~G~LL~sQ~lh~~pV~~ik~  127 (453)
                      .=.|..  +|.|++|++-+.    .|+|+|+.||||+||..|.-..-- =|+.||+...+
T Consensus       518 tm~lP~--~E~~~~V~~t~~----~Vav~TS~~~lRvFt~gGvq~~I~-t~~gP~vtaag  570 (933)
T KOG1274|consen  518 TMILPL--QESIEAVAATSG----WVAVATSLGYLRVFTIGGVQREIF-TLPGPVVTAAG  570 (933)
T ss_pred             eeecCC--CCceeEEEccCc----EEEEEeccceEEEEEecceeeeEe-ecccceEEeec
Confidence            777744  488999987544    799999999999999999754333 46789998873

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=90.64  E-value=4.2  Score=41.95  Aligned_cols=51  Identities=20%  Similarity=0.216  Sum_probs=45.1

Q ss_pred             CccccCCCCeeeEEEECC-CCCEEEEEcCCCcEEEEEcCCceEEEEeccccc
Q 012917          300 LTCLKDHPRKGERLTLSP-SGSLAAITDSLGRILLLDTQALVVVRLWKGYRD  350 (453)
Q Consensus       300 l~~l~D~~R~~~~i~lsP-~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRd  350 (453)
                      ...|.++.-.+-+|.++| ++++.+..-..+--.|+|+..+..++++-|+-.
T Consensus       179 ~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes  230 (343)
T KOG0286|consen  179 TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES  230 (343)
T ss_pred             EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccc
Confidence            356888888999999999 899999988888889999999999999988754

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=90.24  E-value=0.69  Score=49.93  Aligned_cols=113  Identities=19%  Similarity=0.294  Sum_probs=84.1

Q ss_pred             ccccCCCCeeeEEEECC-CCCEEEEEcCCCcEEEEEcCC-ceEEEEecccccce--eeEEEEEecccccccccccCCCCC
Q 012917          301 TCLKDHPRKGERLTLSP-SGSLAAITDSLGRILLLDTQA-LVVVRLWKGYRDAS--CVFMEMLVNKDAATSSAYYAPVKS  376 (453)
Q Consensus       301 ~~l~D~~R~~~~i~lsP-~~~laa~tDslGRV~LiD~~~-~~ivRmWKGyRdAq--c~Wi~~~~~~~~~~~~~~~~~~k~  376 (453)
                      ..+.+++.-+.+|...| .+.|.+..-..|.|.|+|+-. +..||-+.|++.+=  ..|-+                   
T Consensus       208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-------------------  268 (503)
T KOG0282|consen  208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-------------------  268 (503)
T ss_pred             eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-------------------
Confidence            35888888899999999 899999999999999999998 99999999998731  11111                   


Q ss_pred             CccEEEEEEcCCCCeEEEeecCCCCeEEEEEecCCeEEeccccccCccCCCCCCcC--cEEEEEeCCCCceEE
Q 012917          377 DYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGSSMASSPYVP--LEVFLLNGDSGQLSV  447 (453)
Q Consensus       377 ~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~~~Ll~~~~~~~g~~~~~~~~~--~~~~lld~~~g~l~~  447 (453)
                      +..-|  .-+.-++.|.+||+.+|+.+..|+.++-          ..   ...|+|  .+.+|.-++||.|.-
T Consensus       269 ~g~~f--LS~sfD~~lKlwDtETG~~~~~f~~~~~----------~~---cvkf~pd~~n~fl~G~sd~ki~~  326 (503)
T KOG0282|consen  269 CGTSF--LSASFDRFLKLWDTETGQVLSRFHLDKV----------PT---CVKFHPDNQNIFLVGGSDKKIRQ  326 (503)
T ss_pred             cCCee--eeeecceeeeeeccccceEEEEEecCCC----------ce---eeecCCCCCcEEEEecCCCcEEE
Confidence            11113  4677899999999999999999984431          11   223443  467777777776653

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.11  E-value=1.9  Score=43.71  Aligned_cols=95  Identities=18%  Similarity=0.249  Sum_probs=71.8

Q ss_pred             CCCCccccCCCCeeeEEEECCC-CCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCC
Q 012917          297 ASPLTCLKDHPRKGERLTLSPS-GSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVK  375 (453)
Q Consensus       297 a~pl~~l~D~~R~~~~i~lsP~-~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k  375 (453)
                      +.|+.++.+++|++.++--.+. ++-..++.=.|-|=|+|-.+..-|+-++|+++.=.+=.  ..+              
T Consensus        94 s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~--~sp--------------  157 (311)
T KOG0277|consen   94 SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAA--FSP--------------  157 (311)
T ss_pred             CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEe--cCC--------------
Confidence            4588899999999999999994 55666677789999999999999999999988421111  101              


Q ss_pred             CCccEEEEEEcCCCCeEEEeecCC-CCeEEEEEecC
Q 012917          376 SDYCLCLAIHAPRKGIIEVWQMRT-GPRLLTIQCAK  410 (453)
Q Consensus       376 ~~~~l~LvIyaprRg~lEVW~~~~-G~RV~a~~v~~  410 (453)
                      ...  =|+-++.-+|.+.+|++|. |.+.. |.++.
T Consensus       158 ~~~--nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~  190 (311)
T KOG0277|consen  158 HIP--NLFASASGDGTLRLWDVRSPGKFMS-IEAHN  190 (311)
T ss_pred             CCC--CeEEEccCCceEEEEEecCCCceeE-EEecc
Confidence            011  2668999999999999997 44444 66654

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=89.88  E-value=1  Score=51.46  Aligned_cols=93  Identities=23%  Similarity=0.349  Sum_probs=59.9

Q ss_pred             CCEEEEEcCCCcEEEEEcCCceEEEEecccc-c--ceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEe
Q 012917          319 GSLAAITDSLGRILLLDTQALVVVRLWKGYR-D--ASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVW  395 (453)
Q Consensus       319 ~~laa~tDslGRV~LiD~~~~~ivRmWKGyR-d--Aqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW  395 (453)
                      .-+.|++|-.|||+|+|...+.++- |=-.- |  -++.|+.....               .+.+.|+||.|  ..|-+|
T Consensus        79 ~lliAsaD~~GrIil~d~~~~s~~~-~l~~~~~~~qdl~W~~~rd~---------------Srd~LlaIh~s--s~lvLw  140 (1062)
T KOG1912|consen   79 QLLIASADISGRIILVDFVLASVIN-WLSHSNDSVQDLCWVPARDD---------------SRDVLLAIHGS--STLVLW  140 (1062)
T ss_pred             ceeEEeccccCcEEEEEehhhhhhh-hhcCCCcchhheeeeeccCc---------------chheeEEecCC--cEEEEE
Confidence            4578899999999999998876543 31111 1  24556654222               12558999998  689999


Q ss_pred             ecCCCCeEEEEEecCCeEEeccccccCccCCCCCCcCcEEEEE
Q 012917          396 QMRTGPRLLTIQCAKGSKILQPTYRFGSSMASSPYVPLEVFLL  438 (453)
Q Consensus       396 ~~~~G~RV~a~~v~~~~~Ll~~~~~~~g~~~~~~~~~~~~~ll  438 (453)
                      +..+|.++---.         .++...++-+--||.+.++||+
T Consensus       141 ntdtG~k~Wk~~---------ys~~iLs~f~~DPfd~rh~~~l  174 (1062)
T KOG1912|consen  141 NTDTGEKFWKYD---------YSHEILSCFRVDPFDSRHFCVL  174 (1062)
T ss_pred             EccCCceeeccc---------cCCcceeeeeeCCCCcceEEEE
Confidence            999999875433         2344444444445666666665

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=89.84  E-value=1.9  Score=47.24  Aligned_cols=90  Identities=16%  Similarity=0.216  Sum_probs=58.9

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (453)
                      +.|++-.+..|..||++.+.|++|.-+.|+|+|+++..+----       .+|.....+.-      .=+|..     -+
T Consensus       483 ~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~-------w~FHtakI~~~------aWsP~n-----~~  544 (603)
T KOG0318|consen  483 LLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNR-------WAFHTAKINCV------AWSPNN-----KL  544 (603)
T ss_pred             eecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecce-------eeeeeeeEEEE------EeCCCc-----eE
Confidence            6677888999999999999999999999999999999983322       22332221110      000010     24


Q ss_pred             EEEcCCCCeEEEeecCC-CCeEEEEEecC
Q 012917          383 AIHAPRKGIIEVWQMRT-GPRLLTIQCAK  410 (453)
Q Consensus       383 vIyaprRg~lEVW~~~~-G~RV~a~~v~~  410 (453)
                      |--...+-.|-||+|.. ..++.+.++++
T Consensus       545 vATGSlDt~Viiysv~kP~~~i~iknAH~  573 (603)
T KOG0318|consen  545 VATGSLDTNVIIYSVKKPAKHIIIKNAHL  573 (603)
T ss_pred             EEeccccceEEEEEccChhhheEeccccc
Confidence            55566677888999865 34444444433

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=89.68  E-value=1.6  Score=47.19  Aligned_cols=102  Identities=15%  Similarity=0.245  Sum_probs=67.5

Q ss_pred             CCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecc--------ccc-------ccc---
Q 012917          307 PRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNK--------DAA-------TSS---  368 (453)
Q Consensus       307 ~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~--------~~~-------~~~---  368 (453)
                      ++..-+++..-||+|+|+.|.-|-|=++|..+..|+|..+++- |-.-.+......        |+.       +..   
T Consensus        68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~-apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~  146 (487)
T KOG0310|consen   68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQ-APVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQ  146 (487)
T ss_pred             ccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhcc-CceeEEEecccCCeEEEecCCCceEEEEEcCCcEEE
Confidence            4567788888899999999999999999988888888888763 223333221111        000       000   


Q ss_pred             ---------cccCCCCCCccEEEEEEcCCCCeEEEeecCCC-CeEEEEEecC
Q 012917          369 ---------AYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTG-PRLLTIQCAK  410 (453)
Q Consensus       369 ---------~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G-~RV~a~~v~~  410 (453)
                               .+...- .+.+-.+|+-...+|.|.+|++|.- +++..++.+.
T Consensus       147 ~~l~~htDYVR~g~~-~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~  197 (487)
T KOG0310|consen  147 AELSGHTDYVRCGDI-SPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGC  197 (487)
T ss_pred             EEecCCcceeEeecc-ccCCCeEEEecCCCceEEEEEeccCCceeEEecCCC
Confidence                     000000 0112247788999999999999996 9999999764

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=89.65  E-value=1.3  Score=46.31  Aligned_cols=72  Identities=18%  Similarity=0.281  Sum_probs=59.1

Q ss_pred             CEEEEEcCCCcEEEEEcCCceEEEEecccccc--eeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeec
Q 012917          320 SLAAITDSLGRILLLDTQALVVVRLWKGYRDA--SCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQM  397 (453)
Q Consensus       320 ~laa~tDslGRV~LiD~~~~~ivRmWKGyRdA--qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~  397 (453)
                      +.+|+.=|-|-|-|+|..+|..++.+|||-++  +++|+...                   ....|+-+.-+|.|.+|++
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~d-------------------s~h~v~s~ssDG~Vr~wD~  101 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCD-------------------SPHGVISCSSDGTVRLWDI  101 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCC-------------------CCCeeEEeccCCeEEEEEe
Confidence            67788888999999999999999999999875  45555321                   1248899999999999999


Q ss_pred             CCCCeEEEEEecC
Q 012917          398 RTGPRLLTIQCAK  410 (453)
Q Consensus       398 ~~G~RV~a~~v~~  410 (453)
                      |...+++-+.-..
T Consensus       102 Rs~~e~a~~~~~~  114 (376)
T KOG1188|consen  102 RSQAESARISWTQ  114 (376)
T ss_pred             ecchhhhheeccC
Confidence            9999888877543

>KOG2727 consensus Rab3 GTPase-activating protein, non-catalytic subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.54  E-value=0.43  Score=55.08  Aligned_cols=84  Identities=45%  Similarity=0.833  Sum_probs=72.7

Q ss_pred             CCeEEEEeCCeEEEEeChhHHHHHHHHHHhccccccCCCCccCCCccccCccCCccceecccCCCCceeeEEEeCcCC--
Q 012917          140 EEEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMP--  217 (453)
Q Consensus       140 ~eel~Ilyp~~i~~idG~~L~~~L~~c~~~~~~~~w~~~~~~~~~~~~~~~~~~L~ykKW~l~~~~~i~Daa~~G~~~--  217 (453)
                      -++.+++-|+...+.++...+.+.+.+..+.+...|.++-+.++....+.....|++..|+..+-.++.|..+.+++.  
T Consensus       150 yp~~~~~I~g~sl~~~L~ncq~~Vqkaa~Eknsn~~~~~~~~qk~~l~qdi~~~I~hai~~~~~~ppt~Dq~vtas~~~g  229 (1244)
T KOG2727|consen  150 YPEICIVIPGVSLRFDLSNCQSMVQKAAQEKNSNFWDQKNRKQKAELTQDIYQRIPHAIWNVNKNPPTVDQTVTASMPPG  229 (1244)
T ss_pred             ecceEEEECCchhhhhHHHHHHHHHHHHHhccCCcCCccchhhhhhcccchhhccchheeecccCCccHHHhhhcccCch
Confidence            456899999999999999999999999999998899999888877665666788999999999888999998887664  


Q ss_pred             --------CCchhh
Q 012917          218 --------PPLMEV  223 (453)
Q Consensus       218 --------p~~~d~  223 (453)
                              ||.|++
T Consensus       230 y~a~~k~SpPrySq  243 (1244)
T KOG2727|consen  230 YLALQKPSPPRYSQ  243 (1244)
T ss_pred             hhhhccCCCcceee
Confidence                    677887

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=89.37  E-value=1.3  Score=46.06  Aligned_cols=89  Identities=20%  Similarity=0.262  Sum_probs=67.2

Q ss_pred             ccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccE
Q 012917          301 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (453)
Q Consensus       301 ~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (453)
                      ++-.|.+- .+++..+|+|.+.|+.=..|||.++|..+..+-||.-|+=.+=|.=-..    .             +.+ 
T Consensus        18 ~~tld~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS----~-------------dgr-   78 (405)
T KOG1273|consen   18 THTLDNPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWS----R-------------DGR-   78 (405)
T ss_pred             ceeccCCc-cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEec----C-------------CCC-
Confidence            33334444 8999999999999999999999999999999999998876543322211    0             112 


Q ss_pred             EEEEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917          381 CLAIHAPRKGIIEVWQMRTGPRLLTIQCA  409 (453)
Q Consensus       381 ~LvIyaprRg~lEVW~~~~G~RV~a~~v~  409 (453)
                       +..-+.|+..+..|++..|..+.-|+..
T Consensus        79 -~LltsS~D~si~lwDl~~gs~l~rirf~  106 (405)
T KOG1273|consen   79 -KLLTSSRDWSIKLWDLLKGSPLKRIRFD  106 (405)
T ss_pred             -EeeeecCCceeEEEeccCCCceeEEEcc
Confidence             4467889999999999999887777644

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=89.27  E-value=2.7  Score=47.89  Aligned_cols=100  Identities=21%  Similarity=0.304  Sum_probs=68.5

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (453)
                      -.|.+-.+.+|++||+|+++.++|--||.+|+.+.+..+++-++=-|-.+|  |+..             |.    +-|+
T Consensus        51 ~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~--i~fS-------------Pn----g~~f  111 (893)
T KOG0291|consen   51 PLETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGA--IKFS-------------PN----GKFF  111 (893)
T ss_pred             EeecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccce--EEEC-------------CC----CcEE
Confidence            456777899999999999999999999999999999999976644343222  2221             11    1143


Q ss_pred             EEEcCCCCeEEEeecCCCCe------------------EEEEEecCCeEEeccccccCc
Q 012917          383 AIHAPRKGIIEVWQMRTGPR------------------LLTIQCAKGSKILQPTYRFGS  423 (453)
Q Consensus       383 vIyaprRg~lEVW~~~~G~R------------------V~a~~v~~~~~Ll~~~~~~~g  423 (453)
                      ++  .+-+.||||....-.|                  |.++.=.-.+|+|-.+++-+.
T Consensus       112 av--~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s  168 (893)
T KOG0291|consen  112 AV--GCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLS  168 (893)
T ss_pred             EE--EecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccce
Confidence            33  4567888998875444                  334444457777777666555

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=89.00  E-value=3.3  Score=43.27  Aligned_cols=80  Identities=20%  Similarity=0.193  Sum_probs=51.2

Q ss_pred             eEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCC
Q 012917          311 ERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKG  390 (453)
Q Consensus       311 ~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg  390 (453)
                      ..+..+|+|+++-++...|.|.+||+.++.+++-.|--.++..  +.+.  .|             .+.++-.-|.  .+
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~--i~~s--~D-------------G~~~~v~n~~--~~  100 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRG--IAVS--PD-------------GKYVYVANYE--PG  100 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEE--EEE----T-------------TTEEEEEEEE--TT
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcce--EEEc--CC-------------CCEEEEEecC--CC
Confidence            4467899999999998889999999999999998887777544  2221  11             1122222333  47


Q ss_pred             eEEEeecCCCCeEEEEEec
Q 012917          391 IIEVWQMRTGPRLLTIQCA  409 (453)
Q Consensus       391 ~lEVW~~~~G~RV~a~~v~  409 (453)
                      .+.|+|.++.+-+..+.++
T Consensus       101 ~v~v~D~~tle~v~~I~~~  119 (369)
T PF02239_consen  101 TVSVIDAETLEPVKTIPTG  119 (369)
T ss_dssp             EEEEEETTT--EEEEEE--
T ss_pred             ceeEeccccccceeecccc
Confidence            8888888888777777654

...

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=88.95  E-value=7.6  Score=41.18  Aligned_cols=108  Identities=15%  Similarity=0.195  Sum_probs=72.4

Q ss_pred             ccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEe-------c-cccc-------
Q 012917          301 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLV-------N-KDAA-------  365 (453)
Q Consensus       301 ~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~-------~-~~~~-------  365 (453)
                      +.+.-+--.+.+|.++|.+.|+|.....+-|=++|+++|...--.-|+-. +|-=+-+..       . .++.       
T Consensus       145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~-~vr~vavS~rHpYlFs~gedk~VKCwDLe  223 (460)
T KOG0285|consen  145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIE-TVRGVAVSKRHPYLFSAGEDKQVKCWDLE  223 (460)
T ss_pred             hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhh-eeeeeeecccCceEEEecCCCeeEEEech
Confidence            35777778899999999999999999999999999999999887777643 111111100       0 0100       


Q ss_pred             ccc---cccCCCCCCccEEEEE--------EcCCCCeEEEeecCCCCeEEEEEecCC
Q 012917          366 TSS---AYYAPVKSDYCLCLAI--------HAPRKGIIEVWQMRTGPRLLTIQCAKG  411 (453)
Q Consensus       366 ~~~---~~~~~~k~~~~l~LvI--------yaprRg~lEVW~~~~G~RV~a~~v~~~  411 (453)
                      .++   +.++.-.  .-++|.+        -+.|+..+.|||||+-.-|.++.-+++
T Consensus       224 ~nkvIR~YhGHlS--~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~  278 (460)
T KOG0285|consen  224 YNKVIRHYHGHLS--GVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN  278 (460)
T ss_pred             hhhhHHHhccccc--eeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCC
Confidence            011   0011110  1224444        488999999999999999999886665

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=88.47  E-value=4.3  Score=42.60  Aligned_cols=90  Identities=11%  Similarity=0.039  Sum_probs=60.2

Q ss_pred             ECCCCCEEEEEcC----------CCcEEEEEcCCceEEEEeccccc--ceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917          315 LSPSGSLAAITDS----------LGRILLLDTQALVVVRLWKGYRD--ASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (453)
Q Consensus       315 lsP~~~laa~tDs----------lGRV~LiD~~~~~ivRmWKGyRd--Aqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (453)
                      +||+|+.+.++.+          -+.|.++|++++.+++-..-=-+  +|++=...         ...-++.  .+  +|
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~---------~~~ls~d--gk--~l  119 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPW---------MTSLTPD--NK--TL  119 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccc---------eEEECCC--CC--EE
Confidence            9999988887766          69999999999999986541111  11110000         0000000  12  45


Q ss_pred             EEEcCC-CCeEEEeecCCCCeEEEEEecCCeEEeccc
Q 012917          383 AIHAPR-KGIIEVWQMRTGPRLLTIQCAKGSKILQPT  418 (453)
Q Consensus       383 vIyapr-Rg~lEVW~~~~G~RV~a~~v~~~~~Ll~~~  418 (453)
                      .|+-=- .+.|-|.|+.++..+..+.+ ++|.++|++
T Consensus       120 ~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~t  155 (352)
T TIGR02658       120 LFYQFSPSPAVGVVDLEGKAFVRMMDV-PDCYHIFPT  155 (352)
T ss_pred             EEecCCCCCEEEEEECCCCcEEEEEeC-CCCcEEEEe
Confidence            555533 89999999999999999999 558888886

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=88.31  E-value=1.7  Score=44.17  Aligned_cols=92  Identities=22%  Similarity=0.322  Sum_probs=66.5

Q ss_pred             CCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCc
Q 012917          299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDY  378 (453)
Q Consensus       299 pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~  378 (453)
                      |+.+|.-++-....|..+|+|++.|+.-...-|.|+|+..++.+|+.-     ..-|=.-...     .+       .+.
T Consensus       181 pv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is-----RldwpVRTlS-----FS-------~dg  243 (313)
T KOG1407|consen  181 PVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS-----RLDWPVRTLS-----FS-------HDG  243 (313)
T ss_pred             cccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec-----cccCceEEEE-----ec-------cCc
Confidence            444566666778899999999999998888889999999999999972     1223211111     00       011


Q ss_pred             cEEEEEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917          379 CLCLAIHAPRKGIIEVWQMRTGPRLLTIQCA  409 (453)
Q Consensus       379 ~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~  409 (453)
                      .  +.-.|.-+..|.|=.+++|.|+.-+.+.
T Consensus       244 ~--~lASaSEDh~IDIA~vetGd~~~eI~~~  272 (313)
T KOG1407|consen  244 R--MLASASEDHFIDIAEVETGDRVWEIPCE  272 (313)
T ss_pred             c--eeeccCccceEEeEecccCCeEEEeecc
Confidence            1  3356788899999999999999988853

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=88.30  E-value=4.1  Score=38.53  Aligned_cols=80  Identities=18%  Similarity=0.338  Sum_probs=54.3

Q ss_pred             eeEEEECCCCCEEEEE--cCC-CcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEc
Q 012917          310 GERLTLSPSGSLAAIT--DSL-GRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA  386 (453)
Q Consensus       310 ~~~i~lsP~~~laa~t--Dsl-GRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya  386 (453)
                      ...|.-||+|+++|++  +++ |.|-++|+.+...|.-.+-..--.|.|-.     +             .+.+.-+.-+
T Consensus       103 ~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsP-----d-------------Gr~~~ta~t~  164 (194)
T PF08662_consen  103 RNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSP-----D-------------GRYLATATTS  164 (194)
T ss_pred             ceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcC-----C-------------CCEEEEEEec
Confidence            3579999999999986  355 99999999999998877655444444431     1             1122222334


Q ss_pred             CCC---CeEEEeecCCCCeEEEEEe
Q 012917          387 PRK---GIIEVWQMRTGPRLLTIQC  408 (453)
Q Consensus       387 prR---g~lEVW~~~~G~RV~a~~v  408 (453)
                      ||.   +-+.||+. +|+.+.....
T Consensus       165 ~r~~~dng~~Iw~~-~G~~l~~~~~  188 (194)
T PF08662_consen  165 PRLRVDNGFKIWSF-QGRLLYKKPF  188 (194)
T ss_pred             cceeccccEEEEEe-cCeEeEecch
Confidence            443   66789999 5998887664

>PRK03629 tolB translocation protein TolB; Provisional

Probab=88.17  E-value=5.6  Score=42.05  Aligned_cols=50  Identities=20%  Similarity=0.372  Sum_probs=35.3

Q ss_pred             CCeeeEEEECCCCCEEEEE-cCCC--cEEEEEcCCceEEEEeccc-ccceeeEE
Q 012917          307 PRKGERLTLSPSGSLAAIT-DSLG--RILLLDTQALVVVRLWKGY-RDASCVFM  356 (453)
Q Consensus       307 ~R~~~~i~lsP~~~laa~t-DslG--RV~LiD~~~~~ivRmWKGy-RdAqc~Wi  356 (453)
                      ++.......||+|+.+|.+ +..|  +|.++|+.++.+.++..+. .+....|.
T Consensus       242 ~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wS  295 (429)
T PRK03629        242 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWF  295 (429)
T ss_pred             CCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEEC
Confidence            3444568899999877764 5455  6999999999998888763 34444443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=88.05  E-value=0.74  Score=46.82  Aligned_cols=43  Identities=30%  Similarity=0.428  Sum_probs=39.6

Q ss_pred             cCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEec
Q 012917          304 KDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWK  346 (453)
Q Consensus       304 ~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWK  346 (453)
                      .+.+-.+-++.+||||++.|+...-|+|.|+++-+....|-||
T Consensus       226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence            4556678999999999999999999999999999999999996

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=87.61  E-value=3.5  Score=42.01  Aligned_cols=75  Identities=19%  Similarity=0.164  Sum_probs=49.4

Q ss_pred             eeeccCcceeeeeecceEEE-EeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEecCCcEee
Q 012917           35 LLCALDMHTIALANRYQTVI-INWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVH  113 (453)
Q Consensus        35 ~~~sp~~~~la~A~~~~~v~-~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~G~LL~  113 (453)
                      ++++.+|.+||+-+++.+-| +.- ++...-+.=|. +..++.-.=.=++|  -+|.+.+|.-.++|+|+||+..|..||
T Consensus         3 ~~~~~~Gk~lAi~qd~~iEiRsa~-Ddf~si~~kcq-VpkD~~PQWRkl~W--SpD~tlLa~a~S~G~i~vfdl~g~~lf   78 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQCIEIRSAK-DDFSSIIGKCQ-VPKDPNPQWRKLAW--SPDCTLLAYAESTGTIRVFDLMGSELF   78 (282)
T ss_pred             eeecCCCcEEEEEeccEEEEEecc-CCchheeEEEe-cCCCCCchheEEEE--CCCCcEEEEEcCCCeEEEEecccceeE
Confidence            68899999999999999988 332 11111111121 21111211122333  289999999999999999999998887

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.40  E-value=4.1  Score=47.95  Aligned_cols=283  Identities=17%  Similarity=0.241  Sum_probs=152.3

Q ss_pred             CCeeeeccCcc-eeeeeecceE------------EEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCc--EEEEEe
Q 012917           32 DPNLLCALDMH-TIALANRYQT------------VIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEM--RALAVG   96 (453)
Q Consensus        32 ~~~~~~sp~~~-~la~A~~~~~------------v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw--~~I~VG   96 (453)
                      ...++.||.+- +||.+--...            ++.-|..++.++++-+|.++.  .+|-.-+.|=++.+.  -+||=|
T Consensus         9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s--~~rF~kL~W~~~g~~~~GlIaGG   86 (1049)
T KOG0307|consen    9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQS--SNRFNKLAWGSYGSHSHGLIAGG   86 (1049)
T ss_pred             cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccc--cccceeeeecccCCCccceeecc
Confidence            45677888874 3332221111            122344444566777888866  688889999888544  489999


Q ss_pred             ccccEEEEEecCC-------cEeeecccCccceeEEEEeeccCCCCcCCCCCeEEEEeCCeEEEEeChhHHHHHHHHHHh
Q 012917           97 TSRGYFLVYDLKG-------DLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQD  169 (453)
Q Consensus        97 ~ssG~vrfyte~G-------~LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~~i~~idG~~L~~~L~~c~~~  169 (453)
                      +.+|.|-||+..-       ++|..+.-|+.+|+.|++..-+.++....+++-=+.++          ||-         
T Consensus        87 ~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW----------Dln---------  147 (1049)
T KOG0307|consen   87 LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW----------DLN---------  147 (1049)
T ss_pred             ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe----------ccC---------
Confidence            9999999999554       46777789999999999877665433332222111111          121         


Q ss_pred             ccccccCCCCccCCCccccCccCCccceecccCCCCceeeEEEeCcCCCCchhhcccccceEEEEeCCCc-eeEEEEecc
Q 012917          170 SNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDS-VISAFRLSE  248 (453)
Q Consensus       170 ~~~~~w~~~~~~~~~~~~~~~~~~L~ykKW~l~~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P-~la~y~~~e  248 (453)
                        +      ...+.+.+..+.+..+..=-||-+.+-                          |++.|..- +..+.-+..
T Consensus       148 --n------~~tP~~~~~~~~~~eI~~lsWNrkvqh--------------------------ILAS~s~sg~~~iWDlr~  193 (1049)
T KOG0307|consen  148 --K------PETPFTPGSQAPPSEIKCLSWNRKVSH--------------------------ILASGSPSGRAVIWDLRK  193 (1049)
T ss_pred             --C------cCCCCCCCCCCCcccceEeccchhhhH--------------------------HhhccCCCCCceeccccC
Confidence              0      000000000000112223333332211                          22222222 222222221


Q ss_pred             CCCcchhhhhhhhhhhHHHHHHhhhhhccccCCC-C------CCCCCCCCC----ccccCCCCccccCCCCeeeEEEECC
Q 012917          249 DRSRSLVGAILSKVVPATFSTISSLSKMIWRSEQ-S------PKKSEPKPQ----SFARASPLTCLKDHPRKGERLTLSP  317 (453)
Q Consensus       249 ~~~~s~~~a~~S~va~av~S~~~s~ak~~W~~~~-~------~~~~e~~p~----~~~~a~pl~~l~D~~R~~~~i~lsP  317 (453)
                      .+  +++.  +|+.....     -...+-|..+. +      .+...|.-+    .+. -+|+..|.-+.|-+.++.-||
T Consensus       194 ~~--pii~--ls~~~~~~-----~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a-ssP~k~~~~H~~GilslsWc~  263 (1049)
T KOG0307|consen  194 KK--PIIK--LSDTPGRM-----HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA-SSPLKILEGHQRGILSLSWCP  263 (1049)
T ss_pred             CC--cccc--cccCCCcc-----ceeeeeeCCCCceeeeeecCCCCCceeEeeccccc-CCchhhhcccccceeeeccCC
Confidence            10  0000  11111110     01113565444 1      112222111    011 346666778899999999999


Q ss_pred             CC-CEEEEEcCCCcEEEEEcCCceEEEEecc----cccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeE
Q 012917          318 SG-SLAAITDSLGRILLLDTQALVVVRLWKG----YRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGII  392 (453)
Q Consensus       318 ~~-~laa~tDslGRV~LiD~~~~~ivRmWKG----yRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~l  392 (453)
                      .. +|++.+--.+|||.++..+|.+|--.--    |+|-|  |-.    .+              .  .++=-|--.|-|
T Consensus       264 ~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~--w~p----r~--------------P--~~~A~asfdgkI  321 (1049)
T KOG0307|consen  264 QDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQ--WCP----RN--------------P--SVMAAASFDGKI  321 (1049)
T ss_pred             CCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeee--ecC----CC--------------c--chhhhheeccce
Confidence            55 9999999999999999999999987755    55422  221    11              1  122334458999


Q ss_pred             EEeecCCCC
Q 012917          393 EVWQMRTGP  401 (453)
Q Consensus       393 EVW~~~~G~  401 (453)
                      +|++++.+.
T Consensus       322 ~I~sl~~~~  330 (1049)
T KOG0307|consen  322 SIYSLQGTD  330 (1049)
T ss_pred             eeeeeecCC
Confidence            999998766

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=87.29  E-value=3.3  Score=43.69  Aligned_cols=113  Identities=15%  Similarity=0.065  Sum_probs=79.3

Q ss_pred             CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEE-----EEEeccccc-------ccc-------
Q 012917          308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFM-----EMLVNKDAA-------TSS-------  368 (453)
Q Consensus       308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi-----~~~~~~~~~-------~~~-------  368 (453)
                      -.|.-+|+.-+.++.....+.--|.++|+++|.++...=|+-||-.+-.     .+....|..       +.+       
T Consensus       236 HtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrV  315 (499)
T KOG0281|consen  236 HTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRV  315 (499)
T ss_pred             CCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHH
Confidence            3577899999999998888999999999999999999999988866533     122222211       111       


Q ss_pred             ---cccCCCCCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEecCC--eEEeccccc
Q 012917          369 ---AYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKG--SKILQPTYR  420 (453)
Q Consensus       369 ---~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~--~~Ll~~~~~  420 (453)
                         +.......++---+++-|.-+..|+||++.++..|-+++.++-  +.|-|.+.-
T Consensus       316 LvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rl  372 (499)
T KOG0281|consen  316 LVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRL  372 (499)
T ss_pred             HhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccceehhccCeE
Confidence               1111122222113778999999999999999999999998875  344444433

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=85.82  E-value=4  Score=46.37  Aligned_cols=69  Identities=23%  Similarity=0.370  Sum_probs=48.1

Q ss_pred             CCcEEEEEeccccEEEEEecCCcEeeecc-cCcc--------ceeEEEEeeccCCCCcCCCCCeEEEEeCCe-EEEEeC-
Q 012917           88 EEMRALAVGTSRGYFLVYDLKGDLVHRQL-IHPG--------RILKLRVRGSRRDLTQDTAEEEVCVVMPGV-LARFDG-  156 (453)
Q Consensus        88 ~dw~~I~VG~ssG~vrfyte~G~LL~sQ~-lh~~--------pV~~ik~r~~~~~~~~~~~~eel~Ilyp~~-i~~idG-  156 (453)
                      ||-.-.+||+=.||.|||+-.|..|.++. +|..        +|..|.+....        .++|.|--.+- |=++|| 
T Consensus       461 PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~--------~~~vLVTSnDSrIRI~d~~  532 (712)
T KOG0283|consen  461 PDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGD--------PDEVLVTSNDSRIRIYDGR  532 (712)
T ss_pred             cCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCC--------CCeEEEecCCCceEEEecc
Confidence            56678899999999999999999888873 3322        34444433332        34788888885 777899 


Q ss_pred             -hhHHHHHH
Q 012917          157 -SEIQKMLQ  164 (453)
Q Consensus       157 -~~L~~~L~  164 (453)
                       -+|-.-++
T Consensus       533 ~~~lv~KfK  541 (712)
T KOG0283|consen  533 DKDLVHKFK  541 (712)
T ss_pred             chhhhhhhc
Confidence             66654433

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=85.31  E-value=15  Score=40.56  Aligned_cols=94  Identities=22%  Similarity=0.251  Sum_probs=68.7

Q ss_pred             cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEE
Q 012917          302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC  381 (453)
Q Consensus       302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~  381 (453)
                      ++-|+.|=..++--+|||.++|.+-+.|.|+|+|=.+|..+-...+ -+|.=+=|-...=.          |   |.-.|
T Consensus       185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~-~~aHkGsIfalsWs----------P---Ds~~~  250 (603)
T KOG0318|consen  185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED-SDAHKGSIFALSWS----------P---DSTQF  250 (603)
T ss_pred             cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC-CCCccccEEEEEEC----------C---CCceE
Confidence            3666777888999999999999999999999999999999988765 33332222221111          1   11224


Q ss_pred             EEEEcCCCCeEEEeecCCCCeEEEEEecCC
Q 012917          382 LAIHAPRKGIIEVWQMRTGPRLLTIQCAKG  411 (453)
Q Consensus       382 LvIyaprRg~lEVW~~~~G~RV~a~~v~~~  411 (453)
                      |-  +.-+-.++||++-++..+-++..+..
T Consensus       251 ~T--~SaDkt~KIWdVs~~slv~t~~~~~~  278 (603)
T KOG0318|consen  251 LT--VSADKTIKIWDVSTNSLVSTWPMGST  278 (603)
T ss_pred             EE--ecCCceEEEEEeeccceEEEeecCCc
Confidence            43  34467899999999999999998865

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=85.15  E-value=2.1  Score=46.30  Aligned_cols=67  Identities=19%  Similarity=0.326  Sum_probs=51.6

Q ss_pred             eeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccc--eeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917          310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA--SCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP  387 (453)
Q Consensus       310 ~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdA--qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap  387 (453)
                      ...+-.||+|++++..|+.|+|..+|-.+-.++.-||+|-..  ++.|+...             +.       -||-+.
T Consensus       435 s~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e-------------~S-------kvat~~  494 (503)
T KOG0282|consen  435 SCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE-------------PS-------KVATCG  494 (503)
T ss_pred             eeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCC-------------cc-------eeEecc
Confidence            356778999999999999999999999999999999999321  23454321             11       345666


Q ss_pred             CCCeEEEee
Q 012917          388 RKGIIEVWQ  396 (453)
Q Consensus       388 rRg~lEVW~  396 (453)
                      =.|.|.||+
T Consensus       495 w~G~Ikiwd  503 (503)
T KOG0282|consen  495 WDGLIKIWD  503 (503)
T ss_pred             cCceeEecC
Confidence            789999995

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=84.76  E-value=10  Score=45.64  Aligned_cols=92  Identities=20%  Similarity=0.289  Sum_probs=65.5

Q ss_pred             ccCCCCe--eeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccE
Q 012917          303 LKDHPRK--GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (453)
Q Consensus       303 l~D~~R~--~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (453)
                      +.-..|+  +.+|++||.+.|+++.-+-|-+.|+|+.-+..++-|+===+|+.-=+.+..-..          +.     
T Consensus      1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~----------~~----- 1253 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYP----------QE----- 1253 (1431)
T ss_pred             hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCC----------CC-----
Confidence            3344455  689999999999999999999999999999999999743333332222211100          00     


Q ss_pred             EEEEEcC--CCCeEEEeecCCCCeEEEEEec
Q 012917          381 CLAIHAP--RKGIIEVWQMRTGPRLLTIQCA  409 (453)
Q Consensus       381 ~LvIyap--rRg~lEVW~~~~G~RV~a~~v~  409 (453)
                      .-.|.+.  -.+-|++|+|-+|.|=.++-++
T Consensus      1254 S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1254 SVSVSAGSSSNNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred             ceEEEecccCCCceeeeecccCcceEEEEcC
Confidence            1223333  3688999999999999999988

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=84.09  E-value=4.2  Score=41.02  Aligned_cols=85  Identities=14%  Similarity=0.241  Sum_probs=64.3

Q ss_pred             eeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCC
Q 012917          310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRK  389 (453)
Q Consensus       310 ~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprR  389 (453)
                      +.+++.||+++-..++--.+-+=|+|-.+|.++..+||+-+-+..==-....              ++   --|+-..-+
T Consensus       186 it~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~q--------------sd---thV~sgSED  248 (307)
T KOG0316|consen  186 ITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQ--------------SD---THVFSGSED  248 (307)
T ss_pred             ceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecc--------------cc---eeEEeccCC
Confidence            6789999998766666666778899999999999999998744321111111              12   257888999


Q ss_pred             CeEEEeecCCCCeEEEEEecCC
Q 012917          390 GIIEVWQMRTGPRLLTIQCAKG  411 (453)
Q Consensus       390 g~lEVW~~~~G~RV~a~~v~~~  411 (453)
                      |.+-+|++-.+.-+..+.++..
T Consensus       249 G~Vy~wdLvd~~~~sk~~~~~~  270 (307)
T KOG0316|consen  249 GKVYFWDLVDETQISKLSVVST  270 (307)
T ss_pred             ceEEEEEeccceeeeeeccCCc
Confidence            9999999999999988886644

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=83.86  E-value=6.6  Score=41.71  Aligned_cols=61  Identities=30%  Similarity=0.455  Sum_probs=37.1

Q ss_pred             eeeeeecc-eEEEEeecCCCCCceeEeec-----CCCCCCCcEEEEEEEEe---CCc---EEEEEeccccEEEEEe
Q 012917           43 TIALANRY-QTVIINWADPEGLVAKIRPE-----LSPIASEYITAIEWLVF---EEM---RALAVGTSRGYFLVYD  106 (453)
Q Consensus        43 ~la~A~~~-~~v~~~w~~~~~~~~~~~g~-----l~~~~~e~ITs~~~lp~---~dw---~~I~VG~ssG~vrfyt  106 (453)
                      .+|||+++ .++|.--..+   .|-....     +....++.||+++|-.+   .|-   .|+.|||+.|.|..|.
T Consensus        99 Fvaigy~~G~l~viD~RGP---avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fk  171 (395)
T PF08596_consen   99 FVAIGYESGSLVVIDLRGP---AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFK  171 (395)
T ss_dssp             EEEEEETTSEEEEEETTTT---EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEE
T ss_pred             EEEEEecCCcEEEEECCCC---eEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEE
Confidence            45778765 4555443222   2333222     23345689999999888   333   8999999999999996

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=83.71  E-value=9.2  Score=39.59  Aligned_cols=83  Identities=16%  Similarity=0.170  Sum_probs=62.6

Q ss_pred             eeeEEEECCCCCEEEEEcCCCcEEEEEcCCc------eEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917          309 KGERLTLSPSGSLAAITDSLGRILLLDTQAL------VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (453)
Q Consensus       309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~------~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (453)
                      .+-..+.+|+|+++|+.-..--..++++.+.      .+.|+.+||+.    ++..-.-.+.+                .
T Consensus        99 WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtg----ylScC~f~dD~----------------~  158 (343)
T KOG0286|consen   99 WVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTG----YLSCCRFLDDN----------------H  158 (343)
T ss_pred             eEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccc----eeEEEEEcCCC----------------c
Confidence            4667899999999999754455677777766      78899999998    77654333211                2


Q ss_pred             EEEcCCCCeEEEeecCCCCeEEEEEecCC
Q 012917          383 AIHAPRKGIIEVWQMRTGPRLLTIQCAKG  411 (453)
Q Consensus       383 vIyaprRg~lEVW~~~~G~RV~a~~v~~~  411 (453)
                      +|-+.-+...-+|++.+|+++-.|+-+.|
T Consensus       159 ilT~SGD~TCalWDie~g~~~~~f~GH~g  187 (343)
T KOG0286|consen  159 ILTGSGDMTCALWDIETGQQTQVFHGHTG  187 (343)
T ss_pred             eEecCCCceEEEEEcccceEEEEecCCcc
Confidence            35566677888999999999999996665

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=83.63  E-value=2.9  Score=46.75  Aligned_cols=86  Identities=22%  Similarity=0.191  Sum_probs=58.3

Q ss_pred             CeeeeccCcceeeeeecc-eEEEEeecCCCCCceeEeecCCCCCCCcEE-EEEEEEeCCcEEEEEeccccEEEEEe-cCC
Q 012917           33 PNLLCALDMHTIALANRY-QTVIINWADPEGLVAKIRPELSPIASEYIT-AIEWLVFEEMRALAVGTSRGYFLVYD-LKG  109 (453)
Q Consensus        33 ~~~~~sp~~~~la~A~~~-~~v~~~w~~~~~~~~~~~g~l~~~~~e~IT-s~~~lp~~dw~~I~VG~ssG~vrfyt-e~G  109 (453)
                      ..+-.+|--|+||++... .+++-+-..+.    -|  +++ .++|.+| +++|=  +|-..+||||.+|.+++.+ |+|
T Consensus        24 ~~~ewnP~~dLiA~~t~~gelli~R~n~qR----lw--tip-~p~~~v~~sL~W~--~DGkllaVg~kdG~I~L~Dve~~   94 (665)
T KOG4640|consen   24 KRIEWNPKMDLIATRTEKGELLIHRLNWQR----LW--TIP-IPGENVTASLCWR--PDGKLLAVGFKDGTIRLHDVEKG   94 (665)
T ss_pred             EEEEEcCccchhheeccCCcEEEEEeccce----eE--ecc-CCCCccceeeeec--CCCCEEEEEecCCeEEEEEccCC
Confidence            344567999999988777 46663311111    11  122 1567788 66665  4789999999999999999 889


Q ss_pred             cEeeecccC-ccceeEEEE
Q 012917          110 DLVHRQLIH-PGRILKLRV  127 (453)
Q Consensus       110 ~LL~sQ~lh-~~pV~~ik~  127 (453)
                      ..|.+..+. +++|.++-.
T Consensus        95 ~~l~~~~~s~e~~is~~~w  113 (665)
T KOG4640|consen   95 GRLVSFLFSVETDISKGIW  113 (665)
T ss_pred             Cceeccccccccchheeec
Confidence            999887665 446655443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=83.32  E-value=8.8  Score=36.30  Aligned_cols=79  Identities=16%  Similarity=0.249  Sum_probs=51.1

Q ss_pred             eeeEEEECCCCCEE-EEE-cCCCcEEEEEcCCceEEEEe-cccccceeeEEEEEecccccccccccCCCCCCccEEEEE-
Q 012917          309 KGERLTLSPSGSLA-AIT-DSLGRILLLDTQALVVVRLW-KGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI-  384 (453)
Q Consensus       309 ~~~~i~lsP~~~la-a~t-DslGRV~LiD~~~~~ivRmW-KGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI-  384 (453)
                      .+..++=+|+|+.+ +++ +.-++|.|+|+. +..+... ++++. .+.|=.                .  ..  +|++ 
T Consensus        61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~~~~n-~i~wsP----------------~--G~--~l~~~  118 (194)
T PF08662_consen   61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGTQPRN-TISWSP----------------D--GR--FLVLA  118 (194)
T ss_pred             ceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecCCCce-EEEECC----------------C--CC--EEEEE
Confidence            48999999998654 443 456799999997 4444433 33443 233321                1  11  3444 


Q ss_pred             -EcCCCCeEEEeecCCCCeEEEEEec
Q 012917          385 -HAPRKGIIEVWQMRTGPRLLTIQCA  409 (453)
Q Consensus       385 -yaprRg~lEVW~~~~G~RV~a~~v~  409 (453)
                       +.-..|.|++|++++..++..+.-+
T Consensus       119 g~~n~~G~l~~wd~~~~~~i~~~~~~  144 (194)
T PF08662_consen  119 GFGNLNGDLEFWDVRKKKKISTFEHS  144 (194)
T ss_pred             EccCCCcEEEEEECCCCEEeeccccC
Confidence             3344688999999999999887744

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=83.06  E-value=6.8  Score=42.31  Aligned_cols=86  Identities=14%  Similarity=0.298  Sum_probs=61.0

Q ss_pred             eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCC
Q 012917          309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPR  388 (453)
Q Consensus       309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyapr  388 (453)
                      ....+.+-|+|.|...+++.|-...-|..+|..+-+---- -.+|.--...-              ..| .|.|.-|.| 
T Consensus       305 ~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~-~s~v~~ts~~f--------------HpD-gLifgtgt~-  367 (506)
T KOG0289|consen  305 PVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE-TSDVEYTSAAF--------------HPD-GLIFGTGTP-  367 (506)
T ss_pred             cceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec-cccceeEEeeE--------------cCC-ceEEeccCC-
Confidence            3567889999999999999999999999999776543110 11111111100              012 678888888 


Q ss_pred             CCeEEEeecCCCCeEEEEEecCC
Q 012917          389 KGIIEVWQMRTGPRLLTIQCAKG  411 (453)
Q Consensus       389 Rg~lEVW~~~~G~RV~a~~v~~~  411 (453)
                      +|+|+||++..+.-++.|-.+.+
T Consensus       368 d~~vkiwdlks~~~~a~Fpght~  390 (506)
T KOG0289|consen  368 DGVVKIWDLKSQTNVAKFPGHTG  390 (506)
T ss_pred             CceEEEEEcCCccccccCCCCCC
Confidence            99999999999988888776543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=82.79  E-value=2.3  Score=31.97  Aligned_cols=36  Identities=25%  Similarity=0.478  Sum_probs=30.4

Q ss_pred             CCcEEEEEEEEeCCcEEEEEeccccEEEEEecCCcEee
Q 012917           76 SEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVH  113 (453)
Q Consensus        76 ~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~G~LL~  113 (453)
                      .++|+++.|=|-.|  .||+|+.+|.|.+|..+|..+.
T Consensus        11 ~~~v~~~~w~P~md--LiA~~t~~g~v~v~Rl~~qriw   46 (47)
T PF12894_consen   11 PSRVSCMSWCPTMD--LIALGTEDGEVLVYRLNWQRIW   46 (47)
T ss_pred             CCcEEEEEECCCCC--EEEEEECCCeEEEEECCCcCcc
Confidence            46688888877666  7999999999999999998765

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=82.63  E-value=7.8  Score=44.99  Aligned_cols=117  Identities=17%  Similarity=0.221  Sum_probs=78.7

Q ss_pred             eeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCC
Q 012917          310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRK  389 (453)
Q Consensus       310 ~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprR  389 (453)
                      +..++++=+|+++|..-+.=-|-|+++..+-..+..+|+- |++-=+....+                 .-||+.-+- .
T Consensus        99 ~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~-apVl~l~~~p~-----------------~~fLAvss~-d  159 (933)
T KOG1274|consen   99 IRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD-APVLQLSYDPK-----------------GNFLAVSSC-D  159 (933)
T ss_pred             ceEEEEecCCcEEEeecCceeEEEEeccccchheeecccC-CceeeeeEcCC-----------------CCEEEEEec-C
Confidence            5578999999888886555569999999999999999984 44443332211                 226776655 9


Q ss_pred             CeEEEeecCCCCeEEEEEecCCeEEeccccccC-ccCCCCC-CcC-cEEEEEeCCCCceEEEecc
Q 012917          390 GIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFG-SSMASSP-YVP-LEVFLLNGDSGQLSVLNRS  451 (453)
Q Consensus       390 g~lEVW~~~~G~RV~a~~v~~~~~Ll~~~~~~~-g~~~~~~-~~~-~~~~lld~~~g~l~~i~~~  451 (453)
                      |.|.||++++|....++.      .+.+.-.+. ......+ |+| ..=+++-|.++.++.++|.
T Consensus       160 G~v~iw~~~~~~~~~tl~------~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~  218 (933)
T KOG1274|consen  160 GKVQIWDLQDGILSKTLT------GVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRK  218 (933)
T ss_pred             ceEEEEEcccchhhhhcc------cCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccC
Confidence            999999999776655554      223322222 1111222 777 4777777888888888874

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=82.02  E-value=9.5  Score=39.91  Aligned_cols=104  Identities=16%  Similarity=0.210  Sum_probs=63.1

Q ss_pred             CCEEEEEc-CCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeec
Q 012917          319 GSLAAITD-SLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQM  397 (453)
Q Consensus       319 ~~laa~tD-slGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~  397 (453)
                      +.|+.+++ .-|.|.+||..+..+++..+.--+.   .....-..              |...++|+  .|.|.|-++|+
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~---h~~~~~s~--------------Dgr~~yv~--~rdg~vsviD~   65 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAP---HAGLKFSP--------------DGRYLYVA--NRDGTVSVIDL   65 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTE---EEEEE-TT---------------SSEEEEE--ETTSEEEEEET
T ss_pred             ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCc---eeEEEecC--------------CCCEEEEE--cCCCeEEEEEC
Confidence            46777765 4799999999999999988754342   11111111              12223333  57899999999


Q ss_pred             CCCCeEEEEEecCCeEEeccc--cccCccCCCCCCcCcEEEEEeCCCCc
Q 012917          398 RTGPRLLTIQCAKGSKILQPT--YRFGSSMASSPYVPLEVFLLNGDSGQ  444 (453)
Q Consensus       398 ~~G~RV~a~~v~~~~~Ll~~~--~~~~g~~~~~~~~~~~~~lld~~~g~  444 (453)
                      .+++.+..+.++.+.+=+.-+  -+..-   ..-|.++++.+||..+.+
T Consensus        66 ~~~~~v~~i~~G~~~~~i~~s~DG~~~~---v~n~~~~~v~v~D~~tle  111 (369)
T PF02239_consen   66 ATGKVVATIKVGGNPRGIAVSPDGKYVY---VANYEPGTVSVIDAETLE  111 (369)
T ss_dssp             TSSSEEEEEE-SSEEEEEEE--TTTEEE---EEEEETTEEEEEETTT--
T ss_pred             CcccEEEEEecCCCcceEEEcCCCCEEE---EEecCCCceeEecccccc
Confidence            999999999998765433221  11110   112677888888876554

...

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.37  E-value=35  Score=38.65  Aligned_cols=220  Identities=16%  Similarity=0.254  Sum_probs=137.9

Q ss_pred             CcEEEEEEEEeCCcEEEEEeccccEEEEEe-cCCcEeeecccCccceeEEEEeeccCCCCcCCCCCeEEEEeCCeEEEEe
Q 012917           77 EYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFD  155 (453)
Q Consensus        77 e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt-e~G~LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~~i~~id  155 (453)
                      +-|.+.-.|+=.+|  |++|-++++||+|. .+|+++..=--|++-|.+|.+..+.+.           ||-.       
T Consensus        56 ~PvRa~kfiaRknW--iv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~-----------vLts-------  115 (794)
T KOG0276|consen   56 VPVRAAKFIARKNW--IVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPY-----------VLTS-------  115 (794)
T ss_pred             cchhhheeeeccce--EEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCe-----------EEec-------
Confidence            44778888888899  78999999999999 669999988889999999998777651           1110       


Q ss_pred             ChhHHHHHHHHHHhccccccCCCCccCCCccccCccCCccceecccCCCCceeeEEEeCcCCCCchhhcccccceEEEEe
Q 012917          156 GSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTI  235 (453)
Q Consensus       156 G~~L~~~L~~c~~~~~~~~w~~~~~~~~~~~~~~~~~~L~ykKW~l~~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~v  235 (453)
                                                         ...+-.|.|+.++.=.|.- .|              +|...++..
T Consensus       116 -----------------------------------SDDm~iKlW~we~~wa~~q-tf--------------eGH~HyVMq  145 (794)
T KOG0276|consen  116 -----------------------------------SDDMTIKLWDWENEWACEQ-TF--------------EGHEHYVMQ  145 (794)
T ss_pred             -----------------------------------CCccEEEEeeccCceeeee-EE--------------cCcceEEEE
Confidence                                               0125667777765332221 11              122223331


Q ss_pred             CCCceeEEEEeccCCCcchhhhhhhhhhhHHHHHHhhhhhccccCCCCCCCCCCCCCccccCCCCccccCCCCeeeEEEE
Q 012917          236 GEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTL  315 (453)
Q Consensus       236 G~~P~la~y~~~e~~~~s~~~a~~S~va~av~S~~~s~ak~~W~~~~~~~~~e~~p~~~~~a~pl~~l~D~~R~~~~i~l  315 (453)
                           |+ |+.++..++      +    ++-   +-.-.| .|.=.+              ..|...|.-+.|.+..|.-
T Consensus       146 -----v~-fnPkD~ntF------a----S~s---LDrTVK-VWslgs--------------~~~nfTl~gHekGVN~Vdy  191 (794)
T KOG0276|consen  146 -----VA-FNPKDPNTF------A----SAS---LDRTVK-VWSLGS--------------PHPNFTLEGHEKGVNCVDY  191 (794)
T ss_pred             -----EE-ecCCCccce------e----eee---ccccEE-EEEcCC--------------CCCceeeeccccCcceEEe
Confidence                 22 334433222      1    120   111223 552221              1233456666777788887


Q ss_pred             CCCC--CEEEE-EcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeE
Q 012917          316 SPSG--SLAAI-TDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGII  392 (453)
Q Consensus       316 sP~~--~laa~-tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~l  392 (453)
                      =|.|  -+... +|. =-|=++|-++...|+..+|+-.    -+....-               +.-|=++|-..-+|.+
T Consensus       192 y~~gdkpylIsgaDD-~tiKvWDyQtk~CV~TLeGHt~----Nvs~v~f---------------hp~lpiiisgsEDGTv  251 (794)
T KOG0276|consen  192 YTGGDKPYLISGADD-LTIKVWDYQTKSCVQTLEGHTN----NVSFVFF---------------HPELPIIISGSEDGTV  251 (794)
T ss_pred             ccCCCcceEEecCCC-ceEEEeecchHHHHHHhhcccc----cceEEEe---------------cCCCcEEEEecCCccE
Confidence            7765  34444 443 3678899999999999998876    2322111               1223488999999999


Q ss_pred             EEeecCC----------CCeEEEEEecCCeEEeccccc
Q 012917          393 EVWQMRT----------GPRLLTIQCAKGSKILQPTYR  420 (453)
Q Consensus       393 EVW~~~~----------G~RV~a~~v~~~~~Ll~~~~~  420 (453)
                      .||+-.+          +.||-++...|+.+.+--++-
T Consensus       252 riWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~D  289 (794)
T KOG0276|consen  252 RIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFD  289 (794)
T ss_pred             EEecCcceehhhhhhcCCceEEEEeecCCCCeEEEecc
Confidence            9999876          678888888787776655544

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=81.33  E-value=3.1  Score=44.52  Aligned_cols=42  Identities=17%  Similarity=0.186  Sum_probs=39.7

Q ss_pred             eeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccc
Q 012917          310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA  351 (453)
Q Consensus       310 ~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdA  351 (453)
                      -.+++.||++.|+|+.-..|+|.++++.++.+..+.|+-+..
T Consensus       390 wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~  431 (459)
T KOG0288|consen  390 WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN  431 (459)
T ss_pred             cceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCC
Confidence            678899999999999999999999999999999999998886

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=80.43  E-value=51  Score=30.82  Aligned_cols=92  Identities=27%  Similarity=0.337  Sum_probs=64.0

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcC-CCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEE
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDS-LGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC  381 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDs-lGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~  381 (453)
                      +....-.+..+..+|++++.+.... .|.+.++|+..+..++..+|..+    .+....-.+.           .+   +
T Consensus       151 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~-----------~~---~  212 (466)
T COG2319         151 LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTD----PVSSLAFSPD-----------GG---L  212 (466)
T ss_pred             EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCC----ceEEEEEcCC-----------cc---e
Confidence            4555555669999999988777775 99999999999999999999544    2222211110           01   3


Q ss_pred             EEEEcCCCCeEEEeecCCCCeEE-EEEecCCe
Q 012917          382 LAIHAPRKGIIEVWQMRTGPRLL-TIQCAKGS  412 (453)
Q Consensus       382 LvIyaprRg~lEVW~~~~G~RV~-a~~v~~~~  412 (453)
                      +++-....|.+.+|+.+++..+. .+......
T Consensus       213 ~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~  244 (466)
T COG2319         213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS  244 (466)
T ss_pred             EEEEecCCCcEEEEECCCCcEEeeecCCCCcc
Confidence            44446888999999998888887 45544443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=80.35  E-value=26  Score=34.92  Aligned_cols=27  Identities=7%  Similarity=0.158  Sum_probs=23.2

Q ss_pred             EEEECCCCCEEEEEcC-CCcEEEEEcCC
Q 012917          312 RLTLSPSGSLAAITDS-LGRILLLDTQA  338 (453)
Q Consensus       312 ~i~lsP~~~laa~tDs-lGRV~LiD~~~  338 (453)
                      ++.++|+|+++.+++. -+.|.++|+..
T Consensus       179 ~~~~~pdg~~lyv~~~~~~~v~v~~~~~  206 (330)
T PRK11028        179 HMVFHPNQQYAYCVNELNSSVDVWQLKD  206 (330)
T ss_pred             eEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence            5799999999888765 89999999973

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=80.03  E-value=8.5  Score=44.39  Aligned_cols=52  Identities=21%  Similarity=0.273  Sum_probs=41.7

Q ss_pred             cEEEEEEEEe--CCcEEEEEeccccEEEEEecCCcEeeecc--cCccceeEEEEeeccC
Q 012917           78 YITAIEWLVF--EEMRALAVGTSRGYFLVYDLKGDLVHRQL--IHPGRILKLRVRGSRR  132 (453)
Q Consensus        78 ~ITs~~~lp~--~dw~~I~VG~ssG~vrfyte~G~LL~sQ~--lh~~pV~~ik~r~~~~  132 (453)
                      +||++   .+  ++-...|+|.++|++.||+.++..|+.|+  -|++.|..+.+....+
T Consensus       246 ~Vtsl---SFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep  301 (910)
T KOG1539|consen  246 RVTSL---SFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP  301 (910)
T ss_pred             ceeEE---EeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc
Confidence            46665   45  35689999999999999999999999996  4778888887776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	453
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 61/432 (14%), Positives = 125/432 (28%), Gaps = 139/432 (32%)

Query: 45  ALANRYQTVIINWADPEGLVAKIRPEL---SPIASEYITAIEWL-----VFEEM------ 90
            L   Y      +     L++ I+ E    S +   YI   + L     VF +       
Sbjct: 86  VLRINY-----KF-----LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135

Query: 91  ------RALAVGTSRGYFLVYDLKGD----LV-------HRQLIHPGRI--LKLRVRGSR 131
                 +AL         L+  + G     +          Q     +I  L L+   S 
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195

Query: 132 RDLTQDTAEEEVCV-VMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPKQR-----DSE 185
             + +    +++   + P   +R D S   K+     Q         KP +         
Sbjct: 196 ETVLE--MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-- 251

Query: 186 DLENSYERLPHQLWNVSKYGPC------ADAAITGLMPPPLMEVQSSQRYFCAVTIGEDS 239
           +++N+      + WN      C          +T        +  S+      +++   S
Sbjct: 252 NVQNA------KAWNAFNLS-CKILLTTRFKQVT--------DFLSAATT-THISLDHHS 295

Query: 240 VISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRSEQSPKKSEPKPQSFARASP 299
           +     L+ D  +SL    L K +                 +  P+     P+     +P
Sbjct: 296 MT----LTPDEVKSL----LLKYL-----------------DCRPQDL---PREVLTTNP 327

Query: 300 LTC------LKDHP--------RKGERLTLSPSGSLAAITDSLGR-------ILLLDTQ- 337
                    ++D             ++LT     SL  +  +  R       +       
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387

Query: 338 -ALVVVRLWKG--YRDASCVFMEM----LVNKDAATSSAYYAPVKSDYCLCL----AIHA 386
             +++  +W      D   V  ++    LV K    S+     +  +  + L    A+H 
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH- 446

Query: 387 PRKGIIEVWQMR 398
             + I++ + + 
Sbjct: 447 --RSIVDHYNIP 456

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	453
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.53
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	98.51
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.49
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.44
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.3
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.24
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.23
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.21
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.21
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.16
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.15
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.14
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.13
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.13
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.1
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.08
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.08
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.05
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.03
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.01
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.01
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.98
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	97.95
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	97.95
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.94
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.92
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	97.89
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	97.89
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.88
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.87
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	97.87
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	97.85
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.84
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.81
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	97.77
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	97.75
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.67
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.65
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	97.64
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	97.61
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	97.55
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.53
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	97.52
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.48
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	97.48
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	97.46
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	97.43
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.37
3jro_A	753	Fusion protein of protein transport protein SEC13	97.37
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.37
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.35
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.35
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	97.33
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	97.32
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	97.27
3ow8_A	321	WD repeat-containing protein 61; structural genomi	97.24
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.23
3ow8_A	321	WD repeat-containing protein 61; structural genomi	97.22
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	97.16
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.15
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	97.13
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	97.05
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	97.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	96.99
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	96.98
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	96.95
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	96.94
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	96.94
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	96.92
3jro_A	753	Fusion protein of protein transport protein SEC13	96.89
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	96.87
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	96.83
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	96.77
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	96.75
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	96.74
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	96.72
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	96.69
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	96.69
3jrp_A	379	Fusion protein of protein transport protein SEC13	96.68
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.65
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	96.64
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	96.55
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	96.49
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	96.46
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	96.44
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	96.43
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	96.43
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	96.41
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	96.4
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	96.39
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	96.33
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	96.3
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	96.25
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	96.2
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	96.13
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	96.05
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	96.03
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	95.93
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	95.88
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	95.82
2pm7_B	297	Protein transport protein SEC13, protein transport	95.8
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	95.75
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	95.73
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	95.71
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	95.7
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	95.68
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	95.68
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	95.68
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	95.62
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	95.58
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	95.45
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	95.43
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	95.4
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	95.33
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	95.29
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	95.23
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	95.17
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	95.08
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	95.01
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	94.85
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	94.81
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	94.47
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	94.44
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	94.43
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	94.37
2pm7_B	297	Protein transport protein SEC13, protein transport	94.32
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	94.21
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	94.18
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	94.07
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	94.01
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	93.95
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	93.89
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	93.89
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	93.88
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	93.82
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	93.74
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	93.65
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	93.59
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	93.52
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	93.49
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	93.46
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	93.15
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	93.12
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	92.66
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	92.59
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	92.49
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	91.94
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	91.84
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	91.76
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	91.73
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	91.49
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	91.44
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	91.31
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	90.81
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	90.77
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	90.59
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	90.54
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	90.39
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	90.17
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	89.21
1k32_A	1045	Tricorn protease; protein degradation, substrate g	88.87
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	88.86
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	88.64
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	88.58
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	88.38
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	88.38
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	88.16
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	88.13
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	88.01
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	87.03
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	86.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	86.75
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	86.73
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	86.58
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	86.21
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	85.5
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	85.16
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	84.38
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	83.91
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	83.83
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	83.79
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	83.49
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	83.22
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	83.21
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	82.79
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	82.06
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	81.7
2ece_A	462	462AA long hypothetical selenium-binding protein;	81.22
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	80.82
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	80.27
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	80.09

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.53  E-value=0.00016  Score=67.54  Aligned_cols=85  Identities=11%  Similarity=0.183  Sum_probs=64.4

Q ss_pred             CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917          308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP  387 (453)
Q Consensus       308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap  387 (453)
                      .....++.+|++++++++...|.|.++|+.++..++.++|+.+............+              .  .+++-+.
T Consensus       193 ~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~--~~l~sg~  256 (312)
T 4ery_A          193 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG--------------G--KWIVSGS  256 (312)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSS--------------S--CEEEECC
T ss_pred             CceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCC--------------C--cEEEEEC
Confidence            34667899999999999999999999999999999999998874322111111110              1  1456788


Q ss_pred             CCCeEEEeecCCCCeEEEEEe
Q 012917          388 RKGIIEVWQMRTGPRLLTIQC  408 (453)
Q Consensus       388 rRg~lEVW~~~~G~RV~a~~v  408 (453)
                      .+|.|.||+++++..+..+.-
T Consensus       257 ~dg~i~vwd~~~~~~~~~~~~  277 (312)
T 4ery_A          257 EDNLVYIWNLQTKEIVQKLQG  277 (312)
T ss_dssp             TTSCEEEEETTTCCEEEEECC
T ss_pred             CCCEEEEEECCCchhhhhhhc
Confidence            899999999999988877653

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=98.51  E-value=9.5e-05  Score=67.69  Aligned_cols=94  Identities=11%  Similarity=0.113  Sum_probs=62.3

Q ss_pred             eeeeccCcceeeeeecce-EEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEecC-C--
Q 012917           34 NLLCALDMHTIALANRYQ-TVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLK-G--  109 (453)
Q Consensus        34 ~~~~sp~~~~la~A~~~~-~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~-G--  109 (453)
                      .++.+|+++.||.+.... +.+-...... ........+.. ....|+++.|.|-.|-..++.|..+|.|++|+.. |  
T Consensus        16 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~-~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~   93 (351)
T 3f3f_A           16 DVVYDFYGRHVATCSSDQHIKVFKLDKDT-SNWELSDSWRA-HDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQE   93 (351)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEEECSSS-CCEEEEEEEEC-CSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSC
T ss_pred             EEEEcCCCCEEEEeeCCCeEEEEECCCCC-Ccceecceecc-CCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcc
Confidence            366789999999887664 3332322211 11223223322 3467999999886556789999999999999955 4  


Q ss_pred             -------cEeeecccCccceeEEEEee
Q 012917          110 -------DLVHRQLIHPGRILKLRVRG  129 (453)
Q Consensus       110 -------~LL~sQ~lh~~pV~~ik~r~  129 (453)
                             .++..-.-|..+|..+.+..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~v~~~~~~~  120 (351)
T 3f3f_A           94 ECSGRRWNKLCTLNDSKGSLYSVKFAP  120 (351)
T ss_dssp             TTSSCSEEEEEEECCCSSCEEEEEECC
T ss_pred             cccccCcceeeeecccCCceeEEEEcC
Confidence                   44555567888999888643

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.49  E-value=0.00013  Score=69.47  Aligned_cols=88  Identities=13%  Similarity=0.112  Sum_probs=66.8

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (453)
                      +......+..++.+|++++++++...|.|.++|+.++..++.++++...    +....-.+             +.   +
T Consensus       243 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----i~~~~~~~-------------~~---~  302 (425)
T 1r5m_A          243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQS----IVSASWVG-------------DD---K  302 (425)
T ss_dssp             ECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSC----EEEEEEET-------------TT---E
T ss_pred             eccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCcc----EEEEEECC-------------CC---E
Confidence            3344566889999999999999999999999999999999999887652    22111110             12   4


Q ss_pred             EEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917          383 AIHAPRKGIIEVWQMRTGPRLLTIQCAK  410 (453)
Q Consensus       383 vIyaprRg~lEVW~~~~G~RV~a~~v~~  410 (453)
                      ++.+..+|.|.||+++++..+..+..+.
T Consensus       303 l~~~~~d~~i~i~d~~~~~~~~~~~~~~  330 (425)
T 1r5m_A          303 VISCSMDGSVRLWSLKQNTLLALSIVDG  330 (425)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECTT
T ss_pred             EEEEeCCCcEEEEECCCCcEeEecccCC
Confidence            4566779999999999999888887543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.44  E-value=5.3e-05  Score=76.56  Aligned_cols=248  Identities=15%  Similarity=0.196  Sum_probs=147.1

Q ss_pred             CeeeeccCcceeeeeecceEEEEeecCCCCCceeEeecCCCCCCCc-EEEEEEEEeCCcEEEEEeccccEEEEEec-CC-
Q 012917           33 PNLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEY-ITAIEWLVFEEMRALAVGTSRGYFLVYDL-KG-  109 (453)
Q Consensus        33 ~~~~~sp~~~~la~A~~~~~v~~~w~~~~~~~~~~~g~l~~~~~e~-ITs~~~lp~~dw~~I~VG~ssG~vrfyte-~G-  109 (453)
                      ..++.||++++||++.+..+.+-...... ........+.. ..+. |+++.+-|..|-..+++|..+|.|++|+. +| 
T Consensus        22 ~~~~~spdg~~l~~~~~~~v~v~~~~~~~-~~~~~~~~~~~-h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~   99 (615)
T 1pgu_A           22 THLSYDPTTNAIAYPCGKSAFVRCLDDGD-SKVPPVVQFTG-HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   99 (615)
T ss_dssp             CCCEEETTTTEEEEEETTEEEEEECCSSC-CSSCSEEEECT-TTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             eEEEECCCCCEEEEecCCeEEEEECCCCC-CccccceEEec-CCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCc
Confidence            45788999999999998876664433220 01111222222 2466 99999887657778999999999999996 44 


Q ss_pred             -------cEeeecccCccceeEEEEeeccCCCCcCCCCCeEEEEeCC-----eEEEEeChhHHHHHHHHHHhccccccCC
Q 012917          110 -------DLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPG-----VLARFDGSEIQKMLQRWFQDSNSNFWDQ  177 (453)
Q Consensus       110 -------~LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~-----~i~~idG~~L~~~L~~c~~~~~~~~w~~  177 (453)
                             .++..-.-|..+|..+.+...         .+.|.+...+     .|..                     |+.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~---------~~~l~~~~~~~~~~~~v~~---------------------~d~  149 (615)
T 1pgu_A          100 ESNSVEVNVKSEFQVLAGPISDISWDFE---------GRRLCVVGEGRDNFGVFIS---------------------WDS  149 (615)
T ss_dssp             GGTEEEEEEEEEEECCSSCEEEEEECTT---------SSEEEEEECCSSCSEEEEE---------------------TTT
T ss_pred             ccccccccccchhhcccccEEEEEEeCC---------CCEEEEeccCCCCccEEEE---------------------EEC
Confidence                   555555568888888875421         2223333221     1111                     110


Q ss_pred             CCccCCCccccCccCCccceeccc-CCCCceeeEEEeCcCCCCchhhcccccceEEEEeCCCceeEEEEeccCCCcchhh
Q 012917          178 KPKQRDSEDLENSYERLPHQLWNV-SKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVG  256 (453)
Q Consensus       178 ~~~~~~~~~~~~~~~~L~ykKW~l-~~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P~la~y~~~e~~~~s~~~  256 (453)
                             .   .       ....+ ...+.+...++.-            .+.+.+++.+.+-.+-+|......      
T Consensus       150 -------~---~-------~~~~~~~~~~~v~~~~~~~------------~~~~~l~~~~~d~~v~vwd~~~~~------  194 (615)
T 1pgu_A          150 -------G---N-------SLGEVSGHSQRINACHLKQ------------SRPMRSMTVGDDGSVVFYQGPPFK------  194 (615)
T ss_dssp             -------C---C-------EEEECCSCSSCEEEEEECS------------SSSCEEEEEETTTEEEEEETTTBE------
T ss_pred             -------C---C-------cceeeecCCccEEEEEECC------------CCCcEEEEEeCCCcEEEEeCCCcc------
Confidence                   0   0       00000 0112333333321            111235555555555444321110      


Q ss_pred             hhhhhhhhHHHHHHhhhhhccccCCCCCCCCCCCCCccccCCCCccccCCCC---eeeEEEECCC-CCEEEEEcCCCcEE
Q 012917          257 AILSKVVPATFSTISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPR---KGERLTLSPS-GSLAAITDSLGRIL  332 (453)
Q Consensus       257 a~~S~va~av~S~~~s~ak~~W~~~~~~~~~e~~p~~~~~a~pl~~l~D~~R---~~~~i~lsP~-~~laa~tDslGRV~  332 (453)
                                                                ++..+.....   .+.+++.+|+ ++++++....|.|.
T Consensus       195 ------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  232 (615)
T 1pgu_A          195 ------------------------------------------FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKIS  232 (615)
T ss_dssp             ------------------------------------------EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEE
T ss_pred             ------------------------------------------eeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEE
Confidence                                                      0111222233   6889999999 99999999999999


Q ss_pred             EEEcCCceEEEEe-c---ccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEe
Q 012917          333 LLDTQALVVVRLW-K---GYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQC  408 (453)
Q Consensus       333 LiD~~~~~ivRmW-K---GyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v  408 (453)
                      ++|+.++..++.+ +   ++.+. +.-+...   +          .    .  +++-+-.+|.|.||+++++..+..+..
T Consensus       233 vwd~~~~~~~~~~~~~~~~~~~~-v~~~~~~---~----------~----~--~l~~~~~d~~i~~wd~~~~~~~~~~~~  292 (615)
T 1pgu_A          233 CFDGKSGEFLKYIEDDQEPVQGG-IFALSWL---D----------S----Q--KFATVGADATIRVWDVTTSKCVQKWTL  292 (615)
T ss_dssp             EEETTTCCEEEECCBTTBCCCSC-EEEEEES---S----------S----S--EEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             EEECCCCCEeEEecccccccCCc-eEEEEEc---C----------C----C--EEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence            9999999999998 5   66552 2122211   1          0    1  345566789999999999999999887


Q ss_pred             c
Q 012917          409 A  409 (453)
Q Consensus       409 ~  409 (453)
                      +
T Consensus       293 ~  293 (615)
T 1pgu_A          293 D  293 (615)
T ss_dssp             C
T ss_pred             C
Confidence            6

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.30  E-value=0.0015  Score=61.61  Aligned_cols=85  Identities=15%  Similarity=0.149  Sum_probs=64.8

Q ss_pred             CeeeEEEECC--CCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEE
Q 012917          308 RKGERLTLSP--SGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH  385 (453)
Q Consensus       308 R~~~~i~lsP--~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIy  385 (453)
                      +....+..+|  ++++++++...|.|.++|+.++..++.++|+.+.    +....-.+             +..  +++-
T Consensus       185 ~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~----v~~~~~~p-------------~~~--~l~s  245 (304)
T 2ynn_A          185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN----VSFAVFHP-------------TLP--IIIS  245 (304)
T ss_dssp             TCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSC----EEEEEECS-------------SSS--EEEE
T ss_pred             CcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCC----EEEEEECC-------------CCC--EEEE
Confidence            4455666665  7889999999999999999999999999999873    32221111             011  5577


Q ss_pred             cCCCCeEEEeecCCCCeEEEEEecCC
Q 012917          386 APRKGIIEVWQMRTGPRLLTIQCAKG  411 (453)
Q Consensus       386 aprRg~lEVW~~~~G~RV~a~~v~~~  411 (453)
                      +..+|.|.||+++++..+..++.+.+
T Consensus       246 ~s~Dg~i~iWd~~~~~~~~~~~~~~~  271 (304)
T 2ynn_A          246 GSEDGTLKIWNSSTYKVEKTLNVGLE  271 (304)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCSSS
T ss_pred             EcCCCeEEEEECCCCceeeeccCCCc
Confidence            88999999999999999988876543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.24  E-value=0.00085  Score=65.83  Aligned_cols=119  Identities=15%  Similarity=0.214  Sum_probs=75.5

Q ss_pred             CCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCc------------eEEEEecccccceeeEEEEEecccccccccccCC
Q 012917          306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQAL------------VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAP  373 (453)
Q Consensus       306 ~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~------------~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~  373 (453)
                      ....+.+++.+|+|+++++....|+|.|+|+.+.            .....+.|+.+    ++....-..          
T Consensus       255 h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~----~v~~~~~~~----------  320 (393)
T 1erj_A          255 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD----FVLSVATTQ----------  320 (393)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSS----CEEEEEECG----------
T ss_pred             CCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccC----cEEEEEECC----------
Confidence            3456788999999999999999999999999864            44556677766    343222111          


Q ss_pred             CCCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEecCCeEEeccccccCccCCCCCCcC-cEEEEEeCCCCceEEEe
Q 012917          374 VKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGSSMASSPYVP-LEVFLLNGDSGQLSVLN  449 (453)
Q Consensus       374 ~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~~~Ll~~~~~~~g~~~~~~~~~-~~~~lld~~~g~l~~i~  449 (453)
                         +.  -+++-+..+|.|.||++++|..+..+..+.+... ..     .......++| .+.++--..||.++.-+
T Consensus       321 ---~~--~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~-~v-----~~~~~~~~~p~~~~l~sgs~Dg~i~iW~  386 (393)
T 1erj_A          321 ---ND--EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI-SV-----AVANGSSLGPEYNVFATGSGDCKARIWK  386 (393)
T ss_dssp             ---GG--CEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EE-----EECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred             ---CC--CEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEE-EE-----EecCCcCcCCCCCEEEEECCCCcEEECc
Confidence               01  1345677899999999999999988876554221 00     0000112444 34444555688888654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.23  E-value=0.0013  Score=61.75  Aligned_cols=256  Identities=11%  Similarity=0.020  Sum_probs=139.2

Q ss_pred             CeeeeccCcceeeeeecc-eEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEe-cCCc
Q 012917           33 PNLLCALDMHTIALANRY-QTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGD  110 (453)
Q Consensus        33 ~~~~~sp~~~~la~A~~~-~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt-e~G~  110 (453)
                      ..++.+|++++||++... .+.+-..  .. ...+....+.. ....|+++.|-|  +-..++.|..+|.|++|+ +++.
T Consensus        12 ~~~~~s~~~~~l~~~~~d~~v~i~~~--~~-~~~~~~~~~~~-h~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~   85 (372)
T 1k8k_C           12 SCHAWNKDRTQIAICPNNHEVHIYEK--SG-NKWVQVHELKE-HNGQVTGVDWAP--DSNRIVTCGTDRNAYVWTLKGRT   85 (372)
T ss_dssp             CEEEECTTSSEEEEECSSSEEEEEEE--ET-TEEEEEEEEEC-CSSCEEEEEEET--TTTEEEEEETTSCEEEEEEETTE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEeC--CC-CcEEeeeeecC-CCCcccEEEEeC--CCCEEEEEcCCCeEEEEECCCCe
Confidence            357789999999998444 4444222  21 11112222322 346799998876  556788899999999999 4565


Q ss_pred             Eeeec--ccCccceeEEEEeeccCCCCcCCCCCeEEEEeCCe-EEEEeChhHHHHHHHHHHhccccccCCCCccCCCccc
Q 012917          111 LVHRQ--LIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGV-LARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDL  187 (453)
Q Consensus       111 LL~sQ--~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~~-i~~idG~~L~~~L~~c~~~~~~~~w~~~~~~~~~~~~  187 (453)
                      +....  .-|..+|..+.+...         .+.|.+...+. +...|-.              .+       .    . 
T Consensus        86 ~~~~~~~~~~~~~v~~~~~~~~---------~~~l~~~~~d~~v~i~d~~--------------~~-------~----~-  130 (372)
T 1k8k_C           86 WKPTLVILRINRAARCVRWAPN---------EKKFAVGSGSRVISICYFE--------------QE-------N----D-  130 (372)
T ss_dssp             EEEEEECCCCSSCEEEEEECTT---------SSEEEEEETTSSEEEEEEE--------------TT-------T----T-
T ss_pred             eeeeEEeecCCCceeEEEECCC---------CCEEEEEeCCCEEEEEEec--------------CC-------C----c-
Confidence            44433  337788888875321         22344333332 2211100              00       0    0 


Q ss_pred             cCccCCccceecccCCCCceeeEEEeCcCCCCchhhcccccceEEEEeCCCceeEEEEeccCCCcchhhhhhhhhhhHHH
Q 012917          188 ENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATF  267 (453)
Q Consensus       188 ~~~~~~L~ykKW~l~~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P~la~y~~~e~~~~s~~~a~~S~va~av~  267 (453)
                         .  ...+.........+.+.++.-            .+ ..+++.+.+-.+-+|.........           .  
T Consensus       131 ---~--~~~~~~~~~~~~~i~~~~~~~------------~~-~~l~~~~~dg~i~~~d~~~~~~~~-----------~--  179 (372)
T 1k8k_C          131 ---W--WVCKHIKKPIRSTVLSLDWHP------------NS-VLLAAGSCDFKCRIFSAYIKEVEE-----------R--  179 (372)
T ss_dssp             ---E--EEEEEECTTCCSCEEEEEECT------------TS-SEEEEEETTSCEEEEECCCTTTSC-----------C--
T ss_pred             ---c--eeeeeeecccCCCeeEEEEcC------------CC-CEEEEEcCCCCEEEEEcccccccc-----------c--
Confidence               0  000000001122344444321            01 124555556666666543211100           0  


Q ss_pred             HHHhhhhhccccCCCCCCCCCCCCCccccCCCCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecc
Q 012917          268 STISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKG  347 (453)
Q Consensus       268 S~~~s~ak~~W~~~~~~~~~e~~p~~~~~a~pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKG  347 (453)
                          .. ...|+...        +    ...++..+......+.+++.+|++++++++...|+|.++|+.++..++.+++
T Consensus       180 ----~~-~~~~~~~~--------~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  242 (372)
T 1k8k_C          180 ----PA-PTPWGSKM--------P----FGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS  242 (372)
T ss_dssp             ----CC-CBTTBSCC--------C----TTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred             ----cc-cccccccc--------c----hhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc
Confidence                00 01221110        0    0112334556677899999999999999999999999999999999999998


Q ss_pred             cccc--eeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeecCC
Q 012917          348 YRDA--SCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRT  399 (453)
Q Consensus       348 yRdA--qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~  399 (453)
                      ....  .+.|..                   +.. +|+ -+ .+|.|.||++++
T Consensus       243 ~~~~v~~~~~~~-------------------~~~-~l~-~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          243 ETLPLLAVTFIT-------------------ESS-LVA-AG-HDCFPVLFTYDS  274 (372)
T ss_dssp             SSCCEEEEEEEE-------------------TTE-EEE-EE-TTSSCEEEEEET
T ss_pred             CCCCeEEEEEec-------------------CCC-EEE-EE-eCCeEEEEEccC
Confidence            8652  122221                   111 333 33 899999999988

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.21  E-value=0.00075  Score=62.98  Aligned_cols=271  Identities=10%  Similarity=0.039  Sum_probs=143.2

Q ss_pred             eeeccC----cceeeeeecceEEEEeecCCCCCc-eeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEec-C
Q 012917           35 LLCALD----MHTIALANRYQTVIINWADPEGLV-AKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDL-K  108 (453)
Q Consensus        35 ~~~sp~----~~~la~A~~~~~v~~~w~~~~~~~-~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte-~  108 (453)
                      ++.+|+    +.+||.+.....+. -|+-..... -.+.+     ....|+++.|-|- +-..++.|..+|.|++|+. +
T Consensus        75 ~~~~~~~~~~~~~l~~~~~dg~i~-v~d~~~~~~~~~~~~-----~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~  147 (366)
T 3k26_A           75 CAWTYDSNTSHPLLAVAGSRGIIR-IINPITMQCIKHYVG-----HGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQT  147 (366)
T ss_dssp             EEEEECTTTCCEEEEEEETTCEEE-EECTTTCCEEEEEES-----CCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTT
T ss_pred             EEeccCCCCCCCEEEEecCCCEEE-EEEchhceEeeeecC-----CCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeec
Confidence            445666    55667666554222 244332111 12222     2466999988764 5568899999999999994 5


Q ss_pred             CcEeeec---ccCccceeEEEEeeccCCCCcCCCCCeEEEEeCC-eEEEEeChh--HHHHHHHHHHhccccccCCCCccC
Q 012917          109 GDLVHRQ---LIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPG-VLARFDGSE--IQKMLQRWFQDSNSNFWDQKPKQR  182 (453)
Q Consensus       109 G~LL~sQ---~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~-~i~~idG~~--L~~~L~~c~~~~~~~~w~~~~~~~  182 (453)
                      |..+..-   .-|..+|..+.+...         .+.|.....+ .|...|-..  ....++..   ..-.        .
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~--------~  207 (366)
T 3k26_A          148 DTLVAIFGGVEGHRDEVLSADYDLL---------GEKIMSCGMDHSLKLWRINSKRMMNAIKES---YDYN--------P  207 (366)
T ss_dssp             TEEEEEECSTTSCSSCEEEEEECTT---------SSEEEEEETTSCEEEEESCSHHHHHHHHHH---HTCC--------G
T ss_pred             CeEEEEecccccccCceeEEEECCC---------CCEEEEecCCCCEEEEECCCCcccccccee---EEec--------C
Confidence            7666554   468999999986331         2335444444 455555433  33333321   1100        0


Q ss_pred             CCccccCccCCccceecccC--CCCceeeEEEeCcCCCCchhhcccccceEEEEeCCCceeEEEEeccCCCcchhhhhhh
Q 012917          183 DSEDLENSYERLPHQLWNVS--KYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILS  260 (453)
Q Consensus       183 ~~~~~~~~~~~L~ykKW~l~--~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P~la~y~~~e~~~~s~~~a~~S  260 (453)
                      +...............+...  ....+...++.|               ..+++.+.+-.+-+|........      + 
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------------~~l~~~~~d~~i~~wd~~~~~~~------~-  265 (366)
T 3k26_A          208 NKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLG---------------DLILSKSCENAIVCWKPGKMEDD------I-  265 (366)
T ss_dssp             GGCSSCCCCEEECCCSEEECSSCSSCCCEEEEET---------------TEEEEECSSSEEEEEEESSTTCC------G-
T ss_pred             CCCcccccceeeccCccccccCCcceEEEEEEcC---------------CEEEEEecCCEEEEEeCCCcccc------c-
Confidence            00000000001111111111  222344444431               12566677777777765543221      0 


Q ss_pred             hhhhHHHHHHhhhhhccccCCCCCCCCCCCCCccccCCCCccccCCCCeeeEEEECCC--CCEEEEEcCCCcEEEEEcCC
Q 012917          261 KVVPATFSTISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSPS--GSLAAITDSLGRILLLDTQA  338 (453)
Q Consensus       261 ~va~av~S~~~s~ak~~W~~~~~~~~~e~~p~~~~~a~pl~~l~D~~R~~~~i~lsP~--~~laa~tDslGRV~LiD~~~  338 (453)
                                ..+           ...+..      ...+..+......+..++.+|+  ++++|+.+..|.|.++|+.+
T Consensus       266 ----------~~~-----------~~~~~~------~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~  318 (366)
T 3k26_A          266 ----------DKI-----------KPSESN------VTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV  318 (366)
T ss_dssp             ----------GGC-----------CTTCCC------EEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCS
T ss_pred             ----------ccc-----------ccCCcc------hheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCC
Confidence                      000           000000      1122234445556777788888  99999999999999999999


Q ss_pred             ce----EEEEecccc-cceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeecCC
Q 012917          339 LV----VVRLWKGYR-DASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRT  399 (453)
Q Consensus       339 ~~----ivRmWKGyR-dAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~  399 (453)
                      +.    .++.+++++ ...+.-+....  +              ..  +++-+-.+|.|.||++++
T Consensus       319 ~~~~~~~~~~~~~~~~~~~v~~~~~s~--~--------------~~--~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          319 EDPHKAKCTTLTHHKCGAAIRQTSFSR--D--------------SS--ILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             SSGGGCEEEEECCTTCCSCEEEEEECT--T--------------SS--EEEEEETTSEEEEEEC--
T ss_pred             CCCccccceEEcccccCCceEEEEeCC--C--------------CC--eEEEEeCCCEEEEEEecC
Confidence            75    555888875 23332222211  1              11  345677899999999864

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.21  E-value=0.00028  Score=67.82  Aligned_cols=288  Identities=14%  Similarity=0.128  Sum_probs=154.2

Q ss_pred             eeeeccCc-ceeeeeecceEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEecCCcEe
Q 012917           34 NLLCALDM-HTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLV  112 (453)
Q Consensus        34 ~~~~sp~~-~~la~A~~~~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~G~LL  112 (453)
                      .++.+|++ ++||.+.....|. -|+-........ -.+. +....|+++.|-|. +-..++.|..+|.|++|+..+..+
T Consensus        78 ~~~~~~~~~~~l~s~~~dg~i~-iwd~~~~~~~~~-~~~~-~h~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~  153 (383)
T 3ei3_B           78 SLEWHPTHPTTVAVGSKGGDII-LWDYDVQNKTSF-IQGM-GPGDAITGMKFNQF-NTNQLFVSSIRGATTLRDFSGSVI  153 (383)
T ss_dssp             EEEECSSCTTEEEEEEBTSCEE-EEETTSTTCEEE-ECCC-STTCBEEEEEEETT-EEEEEEEEETTTEEEEEETTSCEE
T ss_pred             EEEECCCCCCEEEEEcCCCeEE-EEeCCCccccee-eecC-CcCCceeEEEeCCC-CCCEEEEEeCCCEEEEEECCCCce
Confidence            36778998 8888877653222 143332111111 1111 13467999988764 457889999999999999887766


Q ss_pred             eecccCc---cceeEEEEeeccCCCCcCCCCCeEEEEeCCe-EEEEeChhHHHHHHHHHHhccccccCCCCccCCCcccc
Q 012917          113 HRQLIHP---GRILKLRVRGSRRDLTQDTAEEEVCVVMPGV-LARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLE  188 (453)
Q Consensus       113 ~sQ~lh~---~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~~-i~~idG~~L~~~L~~c~~~~~~~~w~~~~~~~~~~~~~  188 (453)
                      ....-|.   .+|..+.+...         ...|.....+. |...|- +              +       +       
T Consensus       154 ~~~~~~~~~~~~v~~~~~~~~---------~~~l~~~~~d~~i~i~d~-~--------------~-------~-------  195 (383)
T 3ei3_B          154 QVFAKTDSWDYWYCCVDVSVS---------RQMLATGDSTGRLLLLGL-D--------------G-------H-------  195 (383)
T ss_dssp             EEEECCCCSSCCEEEEEEETT---------TTEEEEEETTSEEEEEET-T--------------S-------C-------
T ss_pred             EEEeccCCCCCCeEEEEECCC---------CCEEEEECCCCCEEEEEC-C--------------C-------C-------
Confidence            5554443   66777765321         22333333322 222221 0              0       0       


Q ss_pred             CccCCccceecccC-CCCceeeEEEeCcCCCCchhhcccccceEEEEeCCCceeEEEEeccCCCcchhhhhhhhhhhHHH
Q 012917          189 NSYERLPHQLWNVS-KYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATF  267 (453)
Q Consensus       189 ~~~~~L~ykKW~l~-~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P~la~y~~~e~~~~s~~~a~~S~va~av~  267 (453)
                              ....+. ....+.+.++.-            .+.+.+++++.+-.|-+|........               
T Consensus       196 --------~~~~~~~h~~~v~~~~~~~------------~~~~~l~s~~~d~~i~iwd~~~~~~~---------------  240 (383)
T 3ei3_B          196 --------EIFKEKLHKAKVTHAEFNP------------RCDWLMATSSVDATVKLWDLRNIKDK---------------  240 (383)
T ss_dssp             --------EEEEEECSSSCEEEEEECS------------SCTTEEEEEETTSEEEEEEGGGCCST---------------
T ss_pred             --------EEEEeccCCCcEEEEEECC------------CCCCEEEEEeCCCEEEEEeCCCCCcc---------------
Confidence                    000010 112344444321            11112455555555555543321110               


Q ss_pred             HHHhhhhhccccCCCCCCCCCCCCCccccCCCCccccCCCCeeeEEEECC-CCCEEEEEcCCCcEEEEEcCCceEEEEec
Q 012917          268 STISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSP-SGSLAAITDSLGRILLLDTQALVVVRLWK  346 (453)
Q Consensus       268 S~~~s~ak~~W~~~~~~~~~e~~p~~~~~a~pl~~l~D~~R~~~~i~lsP-~~~laa~tDslGRV~LiD~~~~~ivRmWK  346 (453)
                                                   ..++..+ .....+.+++.+| ++++++++...|+|.|+|+.++..++..+
T Consensus       241 -----------------------------~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  290 (383)
T 3ei3_B          241 -----------------------------NSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII  290 (383)
T ss_dssp             -----------------------------TCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEE
T ss_pred             -----------------------------cceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccc
Confidence                                         0011112 3456788999999 99999999999999999999999888888


Q ss_pred             ccccceeeEEEEEecccccccccccCCCCCCccEEEEEEc-------CCCCeEEEeecCCCCeEEEEEecCCeEEecccc
Q 012917          347 GYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA-------PRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTY  419 (453)
Q Consensus       347 GyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya-------prRg~lEVW~~~~G~RV~a~~v~~~~~Ll~~~~  419 (453)
                      ++......+.....        ..-.|   +..+..+-+.       ..+|.|.||++++|..+..+..+..        
T Consensus       291 ~~~~~~~~~~~~~~--------~~~~p---~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~--------  351 (383)
T 3ei3_B          291 IHPHRQFQHLTPIK--------ATWHP---MYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNA--------  351 (383)
T ss_dssp             ECCBCCCTTSCCCC--------CEECS---SSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTB--------
T ss_pred             cccccccccccceE--------EeccC---CCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCC--------
Confidence            77643221110000        00000   1122233333       3789999999999999888763221        


Q ss_pred             ccCccCCCCCCcCcEEEEEeCCCCceEEEe
Q 012917          420 RFGSSMASSPYVPLEVFLLNGDSGQLSVLN  449 (453)
Q Consensus       420 ~~~g~~~~~~~~~~~~~lld~~~g~l~~i~  449 (453)
                        .+....-.|+|..-+|+-++||.|+..+
T Consensus       352 --~~~~~~~~~s~~g~~l~s~sd~~i~iw~  379 (383)
T 3ei3_B          352 --AGIISLNKFSPTGDVLASGMGFNILIWN  379 (383)
T ss_dssp             --CSCCCEEEECTTSSEEEEEETTEEEEEE
T ss_pred             --CceEEEEEEecCccEEEEecCCcEEEEe
Confidence              1111010244444445555577777655

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.16  E-value=0.0015  Score=65.90  Aligned_cols=86  Identities=16%  Similarity=0.212  Sum_probs=62.9

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (453)
                      +......+..++.+|+++++|++...|.|.|+|. ++..++.++|+.+.    |....-.+             +..  +
T Consensus       463 ~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~----v~~l~~s~-------------dg~--~  522 (577)
T 2ymu_A          463 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS----VRGVAFSP-------------DGQ--T  522 (577)
T ss_dssp             EECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSC----EEEEEECT-------------TSS--C
T ss_pred             EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCC----EEEEEEcC-------------CCC--E
Confidence            3444566788999999999999999999999995 78889999998763    22111111             111  2


Q ss_pred             EEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917          383 AIHAPRKGIIEVWQMRTGPRLLTIQCA  409 (453)
Q Consensus       383 vIyaprRg~lEVW~~~~G~RV~a~~v~  409 (453)
                      ++-+-.+|.|.||+. +|+++..+..+
T Consensus       523 l~s~~~dg~v~lwd~-~~~~~~~~~~h  548 (577)
T 2ymu_A          523 IASASDDKTVKLWNR-NGQLLQTLTGH  548 (577)
T ss_dssp             EEEEETTSEEEEECT-TSCEEEEEECC
T ss_pred             EEEEECcCEEEEEeC-CCCEEEEEcCC
Confidence            345778999999995 78888877643

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.15  E-value=0.0053  Score=60.45  Aligned_cols=86  Identities=14%  Similarity=0.130  Sum_probs=67.4

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (453)
                      +......+.+++.+|+++++++....|.|.++|+.++..++.++|+.+.    +....-.+              .   .
T Consensus       306 ~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~----v~~~~~~~--------------~---~  364 (464)
T 3v7d_B          306 LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL----VGLLRLSD--------------K---F  364 (464)
T ss_dssp             ECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSC----EEEEEECS--------------S---E
T ss_pred             ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCc----EEEEEEcC--------------C---E
Confidence            4455567889999999999999999999999999999999999998773    32221111              1   3


Q ss_pred             EEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917          383 AIHAPRKGIIEVWQMRTGPRLLTIQCA  409 (453)
Q Consensus       383 vIyaprRg~lEVW~~~~G~RV~a~~v~  409 (453)
                      ++-+-.+|.|.||+++++.+...++..
T Consensus       365 l~s~s~dg~v~vwd~~~~~~~~~~~~~  391 (464)
T 3v7d_B          365 LVSAAADGSIRGWDANDYSRKFSYHHT  391 (464)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECT
T ss_pred             EEEEeCCCcEEEEECCCCceeeeecCC
Confidence            456677999999999999888777644

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.14  E-value=0.0007  Score=70.85  Aligned_cols=89  Identities=20%  Similarity=0.187  Sum_probs=67.8

Q ss_pred             cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEec-------ccccceeeEEEEEecccccccccccCCC
Q 012917          302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWK-------GYRDASCVFMEMLVNKDAATSSAYYAPV  374 (453)
Q Consensus       302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWK-------GyRdAqc~Wi~~~~~~~~~~~~~~~~~~  374 (453)
                      .|..+...+.+++.+|+|+++|++...|.|.|+|+.++..++.++       |+.+    ++....=.+           
T Consensus       185 ~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~----~V~~v~~sp-----------  249 (611)
T 1nr0_A          185 TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG----SVFGLTWSP-----------  249 (611)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSS----CEEEEEECT-----------
T ss_pred             eeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCC----CEEEEEECC-----------
Confidence            355666778999999999999999999999999999999999884       5655    332221111           


Q ss_pred             CCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917          375 KSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCA  409 (453)
Q Consensus       375 k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~  409 (453)
                        +..  +++-+..+|.|.||++++|..+..+..+
T Consensus       250 --dg~--~l~s~s~D~~v~lWd~~~~~~~~~~~~~  280 (611)
T 1nr0_A          250 --DGT--KIASASADKTIKIWNVATLKVEKTIPVG  280 (611)
T ss_dssp             --TSS--EEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             --CCC--EEEEEeCCCeEEEEeCCCCceeeeecCC
Confidence              111  3456778999999999999988887654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.13  E-value=0.0009  Score=64.98  Aligned_cols=81  Identities=11%  Similarity=0.128  Sum_probs=60.8

Q ss_pred             CCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCC-ceEEEEecccccce-----------------eeEEEEEeccccccc
Q 012917          306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQA-LVVVRLWKGYRDAS-----------------CVFMEMLVNKDAATS  367 (453)
Q Consensus       306 ~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~-~~ivRmWKGyRdAq-----------------c~Wi~~~~~~~~~~~  367 (453)
                      ....+.+++.+|+|+++++.+. |.|.++|+.+ +..++.++|+....                 +.|-.          
T Consensus       284 ~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~----------  352 (447)
T 3dw8_B          284 IISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNG----------  352 (447)
T ss_dssp             HTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECT----------
T ss_pred             cCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECC----------
Confidence            3347889999999999998877 9999999998 99999998885311                 23320          


Q ss_pred             ccccCCCCCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917          368 SAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCA  409 (453)
Q Consensus       368 ~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~  409 (453)
                               +.. +| +-+-.+|.|.||++++|..+ .+...
T Consensus       353 ---------~~~-~l-~s~s~dg~v~iwd~~~~~~~-~~~~~  382 (447)
T 3dw8_B          353 ---------SDS-VV-MTGSYNNFFRMFDRNTKRDI-TLEAS  382 (447)
T ss_dssp             ---------TSS-EE-EEECSTTEEEEEETTTCCEE-EEECC
T ss_pred             ---------CCC-EE-EEeccCCEEEEEEcCCCcce-eeeec
Confidence                     111 33 67788999999999998776 44444

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.13  E-value=0.0055  Score=56.95  Aligned_cols=87  Identities=11%  Similarity=0.095  Sum_probs=57.5

Q ss_pred             eeeeccCcceeeeeecceEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEe-cCCcEe
Q 012917           34 NLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGDLV  112 (453)
Q Consensus        34 ~~~~sp~~~~la~A~~~~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt-e~G~LL  112 (453)
                      .++.+|++.+||.+.....|. -|+-.....+   ..+.. ....|+++.|-|  +-..++.|..+|.|++|+ ++|..+
T Consensus        37 ~~~~s~~~~~l~~~~~dg~i~-vwd~~~~~~~---~~~~~-h~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~  109 (369)
T 3zwl_B           37 QVKYNKEGDLLFSCSKDSSAS-VWYSLNGERL---GTLDG-HTGTIWSIDVDC--FTKYCVTGSADYSIKLWDVSNGQCV  109 (369)
T ss_dssp             EEEECTTSCEEEEEESSSCEE-EEETTTCCEE---EEECC-CSSCEEEEEECT--TSSEEEEEETTTEEEEEETTTCCEE
T ss_pred             EEEEcCCCCEEEEEeCCCEEE-EEeCCCchhh---hhhhh-cCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcEE
Confidence            467799999999887654222 2433321111   12222 346799998865  566788999999999999 556665


Q ss_pred             eecccCccceeEEEEe
Q 012917          113 HRQLIHPGRILKLRVR  128 (453)
Q Consensus       113 ~sQ~lh~~pV~~ik~r  128 (453)
                      ..-. |..+|..+.+.
T Consensus       110 ~~~~-~~~~v~~~~~~  124 (369)
T 3zwl_B          110 ATWK-SPVPVKRVEFS  124 (369)
T ss_dssp             EEEE-CSSCEEEEEEC
T ss_pred             EEee-cCCCeEEEEEc
Confidence            5544 88888888753

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.10  E-value=0.0028  Score=58.96  Aligned_cols=83  Identities=13%  Similarity=0.011  Sum_probs=63.6

Q ss_pred             CeeeEEEECCCCCEEEEEcCCCcEEEEEcCC-ceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEc
Q 012917          308 RKGERLTLSPSGSLAAITDSLGRILLLDTQA-LVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA  386 (453)
Q Consensus       308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~-~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya  386 (453)
                      .....++.+|+++++++++..|.|.++|+.+ +..++.++++.+.    +....-.+             +..  +++.+
T Consensus       176 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----v~~~~~~~-------------~~~--~l~~~  236 (369)
T 3zwl_B          176 DAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKS----ISDMQFSP-------------DLT--YFITS  236 (369)
T ss_dssp             CCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSC----EEEEEECT-------------TSS--EEEEE
T ss_pred             cceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCc----eeEEEECC-------------CCC--EEEEe
Confidence            3788999999999999999999999999999 8999999887652    22111111             111  33566


Q ss_pred             CCCCeEEEeecCCCCeEEEEEec
Q 012917          387 PRKGIIEVWQMRTGPRLLTIQCA  409 (453)
Q Consensus       387 prRg~lEVW~~~~G~RV~a~~v~  409 (453)
                      -.+|.|.||+++++..+..+...
T Consensus       237 ~~d~~i~v~d~~~~~~~~~~~~~  259 (369)
T 3zwl_B          237 SRDTNSFLVDVSTLQVLKKYETD  259 (369)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECS
T ss_pred             cCCceEEEEECCCCceeeeecCC
Confidence            78999999999999988887733

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.08  E-value=0.0015  Score=62.55  Aligned_cols=86  Identities=13%  Similarity=0.139  Sum_probs=65.9

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (453)
                      +......+.+++.+|+++++++....|.|.|+|+.++..++.++|+.+    .+....-.+             +..  +
T Consensus       180 ~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~----~v~~v~~~p-------------~~~--~  240 (340)
T 1got_B          180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES----DINAICFFP-------------NGN--A  240 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS----CEEEEEECT-------------TSS--E
T ss_pred             EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcC----CEEEEEEcC-------------CCC--E
Confidence            444556688999999999999999999999999999999999999887    233221111             111  3


Q ss_pred             EEEcCCCCeEEEeecCCCCeEEEEE
Q 012917          383 AIHAPRKGIIEVWQMRTGPRLLTIQ  407 (453)
Q Consensus       383 vIyaprRg~lEVW~~~~G~RV~a~~  407 (453)
                      ++-+..+|.|.||+++++..+..+.
T Consensus       241 l~s~s~d~~v~iwd~~~~~~~~~~~  265 (340)
T 1got_B          241 FATGSDDATCRLFDLRADQELMTYS  265 (340)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             EEEEcCCCcEEEEECCCCcEEEEEc
Confidence            4567789999999999988776654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.08  E-value=0.0036  Score=58.38  Aligned_cols=88  Identities=17%  Similarity=0.197  Sum_probs=64.8

Q ss_pred             CCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEE
Q 012917          305 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI  384 (453)
Q Consensus       305 D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI  384 (453)
                      .....+..++.+|++++++++...|.|.++|+.++..++.+..-....+..+....+                ..  +++
T Consensus       147 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~--~l~  208 (312)
T 4ery_A          147 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN----------------GK--YIL  208 (312)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTT----------------SS--EEE
T ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCC----------------CC--EEE
Confidence            344557889999999999999999999999999999888775544444433332111                11  335


Q ss_pred             EcCCCCeEEEeecCCCCeEEEEEecC
Q 012917          385 HAPRKGIIEVWQMRTGPRLLTIQCAK  410 (453)
Q Consensus       385 yaprRg~lEVW~~~~G~RV~a~~v~~  410 (453)
                      .+..+|.|.||+++++..+..+..++
T Consensus       209 ~~~~d~~i~iwd~~~~~~~~~~~~~~  234 (312)
T 4ery_A          209 AATLDNTLKLWDYSKGKCLKTYTGHK  234 (312)
T ss_dssp             EEETTTEEEEEETTTTEEEEEECSSC
T ss_pred             EEcCCCeEEEEECCCCcEEEEEEecC
Confidence            57789999999999998887776443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.05  E-value=0.0019  Score=58.93  Aligned_cols=239  Identities=8%  Similarity=0.063  Sum_probs=134.1

Q ss_pred             eeeeccCcceeeeeecceEEE-Ee-ecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEecCCcE
Q 012917           34 NLLCALDMHTIALANRYQTVI-IN-WADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDL  111 (453)
Q Consensus        34 ~~~~sp~~~~la~A~~~~~v~-~~-w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~G~L  111 (453)
                      .++.+|+++.|+.+.....+. -. |..... .  ....+.. ....|+++.+    +-..+++|..+|.|++|+ .+..
T Consensus        64 ~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~-~--~~~~~~~-~~~~i~~~~~----~~~~l~~~~~d~~i~~~d-~~~~  134 (313)
T 3odt_A           64 SVCYDSEKELLLFGGKDTMINGVPLFATSGE-D--PLYTLIG-HQGNVCSLSF----QDGVVISGSWDKTAKVWK-EGSL  134 (313)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEETTCCTTS-C--C-CEECC-CSSCEEEEEE----ETTEEEEEETTSEEEEEE-TTEE
T ss_pred             EEEECCCCCEEEEecCCCeEEEEEeeecCCC-C--cccchhh-cccCEEEEEe----cCCEEEEEeCCCCEEEEc-CCcE
Confidence            356678888888776664332 22 222211 1  1111212 3466888876    445889999999999999 8888


Q ss_pred             eeecccCccceeEEEEeeccCCCCcCCCCCeEEEEeCC-eEEEEeChhHHHHHHHHHHhccccccCCCCccCCCccccCc
Q 012917          112 VHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPG-VLARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENS  190 (453)
Q Consensus       112 L~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~-~i~~idG~~L~~~L~~c~~~~~~~~w~~~~~~~~~~~~~~~  190 (453)
                      +.....|..+|..+.+-...        .+.+.....+ .+...|-       ..    .                    
T Consensus       135 ~~~~~~~~~~v~~~~~~~~~--------~~~l~~~~~d~~i~i~d~-------~~----~--------------------  175 (313)
T 3odt_A          135 VYNLQAHNASVWDAKVVSFS--------ENKFLTASADKTIKLWQN-------DK----V--------------------  175 (313)
T ss_dssp             EEEEECCSSCEEEEEEEETT--------TTEEEEEETTSCEEEEET-------TE----E--------------------
T ss_pred             EEecccCCCceeEEEEccCC--------CCEEEEEECCCCEEEEec-------Cc----e--------------------
Confidence            88888899999988865422        2234443333 3443330       00    0                    


Q ss_pred             cCCccceecccCCCCceeeEEEeCcCCCCchhhcccccceEEEEeCCCceeEEEEeccCCCcchhhhhhhhhhhHHHHHH
Q 012917          191 YERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTI  270 (453)
Q Consensus       191 ~~~L~ykKW~l~~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P~la~y~~~e~~~~s~~~a~~S~va~av~S~~  270 (453)
                           .+.+.......+...++.-            .+.  +++.+.+-.+-+|......                    
T Consensus       176 -----~~~~~~~~~~~i~~~~~~~------------~~~--~~~~~~dg~i~i~d~~~~~--------------------  216 (313)
T 3odt_A          176 -----IKTFSGIHNDVVRHLAVVD------------DGH--FISCSNDGLIKLVDMHTGD--------------------  216 (313)
T ss_dssp             -----EEEECSSCSSCEEEEEEEE------------TTE--EEEEETTSEEEEEETTTCC--------------------
T ss_pred             -----EEEEeccCcccEEEEEEcC------------CCe--EEEccCCCeEEEEECCchh--------------------
Confidence                 0001111122333333320            111  4444444444444332110                    


Q ss_pred             hhhhhccccCCCCCCCCCCCCCccccCCCCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEeccccc
Q 012917          271 SSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD  350 (453)
Q Consensus       271 ~s~ak~~W~~~~~~~~~e~~p~~~~~a~pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRd  350 (453)
                                                  ++..+......+..++.+|+++ ++++...|+|.++|+.++..++.+++..+
T Consensus       217 ----------------------------~~~~~~~~~~~i~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  267 (313)
T 3odt_A          217 ----------------------------VLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSLKQVITLPAI  267 (313)
T ss_dssp             ----------------------------EEEEEECCSSCEEEEEECTTSC-EEEEETTSEEEEECTTTCCEEEEEECSSS
T ss_pred             ----------------------------hhhhhhcCCceEEEEEEecCCC-EEEEecCCEEEEEECCCCceeEEEeccCc
Confidence                                        1112333445678999999996 55667789999999999999999988765


Q ss_pred             ceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEe
Q 012917          351 ASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQC  408 (453)
Q Consensus       351 Aqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v  408 (453)
                      .    +....-.+             +.. ++  -+-.+|.|.||++++++.+.....
T Consensus       268 ~----i~~~~~~~-------------~~~-~~--~~~~dg~i~iw~~~~~~~~~~~~~  305 (313)
T 3odt_A          268 S----IWSVDCMS-------------NGD-II--VGSSDNLVRIFSQEKSRWASEDEI  305 (313)
T ss_dssp             C----EEEEEECT-------------TSC-EE--EEETTSCEEEEESCGGGCCC----
T ss_pred             e----EEEEEEcc-------------CCC-EE--EEeCCCcEEEEeCCCCceeehhhh
Confidence            2    21111111             111 33  377899999999998876655543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.03  E-value=0.0038  Score=58.43  Aligned_cols=92  Identities=12%  Similarity=0.128  Sum_probs=60.1

Q ss_pred             eeeeccCcceeeeeecc-eEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEec-CCc-
Q 012917           34 NLLCALDMHTIALANRY-QTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDL-KGD-  110 (453)
Q Consensus        34 ~~~~sp~~~~la~A~~~-~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte-~G~-  110 (453)
                      .++.+|+++.||.+... .+.+-.....   .......+.. ....|+++.|.|-.+-..++.|..+|.|++|+. +|. 
T Consensus        16 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~   91 (379)
T 3jrp_A           16 DAVLDYYGKRLATCSSDKTIKIFEVEGE---THKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW   91 (379)
T ss_dssp             EEEECSSSSEEEEEETTSCEEEEEEETT---EEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE
T ss_pred             EEEEcCCCCEEEEEECCCcEEEEecCCC---cceeeeEecC-CCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce
Confidence            36678999999988655 3433222111   1111222322 246699998876544678899999999999994 465 


Q ss_pred             -EeeecccCccceeEEEEee
Q 012917          111 -LVHRQLIHPGRILKLRVRG  129 (453)
Q Consensus       111 -LL~sQ~lh~~pV~~ik~r~  129 (453)
                       .+....-|..+|..+.+..
T Consensus        92 ~~~~~~~~~~~~v~~~~~~~  111 (379)
T 3jrp_A           92 SQIAVHAVHSASVNSVQWAP  111 (379)
T ss_dssp             EEEEEECCCSSCEEEEEECC
T ss_pred             eEeeeecCCCcceEEEEeCC
Confidence             5555566889999988643

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.01  E-value=0.0019  Score=65.27  Aligned_cols=86  Identities=16%  Similarity=0.247  Sum_probs=64.3

Q ss_pred             eeeeccCcceeeeeecceEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEecCCcEee
Q 012917           34 NLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVH  113 (453)
Q Consensus        34 ~~~~sp~~~~la~A~~~~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~G~LL~  113 (453)
                      .++.||+|.+||.+-....|.. |+..++.--++.|-     ...|+++.+-  ||-..+|.|-.+|.|++|+.+|.++.
T Consensus        21 ~~a~spdg~~las~~~d~~v~i-Wd~~~~~~~~l~gh-----~~~V~~l~fs--pdg~~las~~~d~~i~vWd~~~~~~~   92 (577)
T 2ymu_A           21 GVAFSPDGQTIASASDDKTVKL-WNRNGQLLQTLTGH-----SSSVWGVAFS--PDGQTIASASDDKTVKLWNRNGQLLQ   92 (577)
T ss_dssp             EEEECTTSSCEEEEETTSEEEE-ECTTSCEEEEEECC-----SSCEEEEEEC--TTSSEEEEEETTSCEEEEETTSCEEE
T ss_pred             EEEECCCCCEEEEEeCCCEEEE-EECCCCEEEEEeCC-----CCCEEEEEEC--CCCCEEEEEeCCCEEEEEECCCCEEE
Confidence            4778999999999877654432 76443221233432     3568887665  46678888889999999999999998


Q ss_pred             ecccCccceeEEEE
Q 012917          114 RQLIHPGRILKLRV  127 (453)
Q Consensus       114 sQ~lh~~pV~~ik~  127 (453)
                      .-.-|..+|..+.+
T Consensus        93 ~~~~~~~~v~~~~~  106 (577)
T 2ymu_A           93 TLTGHSSSVRGVAF  106 (577)
T ss_dssp             EECCCSSCEEEEEE
T ss_pred             EEECCCCCEEEEEE
Confidence            88889999998886

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.01  E-value=0.0032  Score=58.59  Aligned_cols=88  Identities=14%  Similarity=0.066  Sum_probs=63.9

Q ss_pred             CCeeeEEEECC-CCCEEEEEcCCCcEEEEEcCCc------eEEEEecccccce-----eeEEEEEecccccccccccCCC
Q 012917          307 PRKGERLTLSP-SGSLAAITDSLGRILLLDTQAL------VVVRLWKGYRDAS-----CVFMEMLVNKDAATSSAYYAPV  374 (453)
Q Consensus       307 ~R~~~~i~lsP-~~~laa~tDslGRV~LiD~~~~------~ivRmWKGyRdAq-----c~Wi~~~~~~~~~~~~~~~~~~  374 (453)
                      +..+.+|+.+| ++++++++...|+|.++|....      ..++.++++++-.     .+.+....-.+           
T Consensus       193 ~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-----------  261 (342)
T 1yfq_A          193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-----------  261 (342)
T ss_dssp             SSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT-----------
T ss_pred             CCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcC-----------
Confidence            34578899999 9999999999999999999887      8888999887621     12232211111           


Q ss_pred             CCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917          375 KSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCA  409 (453)
Q Consensus       375 k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~  409 (453)
                        +..  +++-+-.+|.|.||++++|.++..+..+
T Consensus       262 --~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~  292 (342)
T 1yfq_A          262 --RHK--FLYTAGSDGIISCWNLQTRKKIKNFAKF  292 (342)
T ss_dssp             --TTC--CEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred             --CCC--EEEEecCCceEEEEcCccHhHhhhhhcc
Confidence              111  2345667999999999999988887754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.98  E-value=0.0069  Score=63.93  Aligned_cols=246  Identities=14%  Similarity=0.106  Sum_probs=139.6

Q ss_pred             eeeeccCcceeeeeecceEEEEeecCCCCCc-eeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEe-cCCcE
Q 012917           34 NLLCALDMHTIALANRYQTVIINWADPEGLV-AKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGDL  111 (453)
Q Consensus        34 ~~~~sp~~~~la~A~~~~~v~~~w~~~~~~~-~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt-e~G~L  111 (453)
                      .++.||++..||++..+-.|. =|+-..+.. -+..+     ....|+++.|-|  |-..+++|..+|.|++|+ .+|..
T Consensus        18 ~i~~sp~~~~la~~~~~g~v~-iwd~~~~~~~~~~~~-----~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~   89 (814)
T 3mkq_A           18 GIDFHPTEPWVLTTLYSGRVE-IWNYETQVEVRSIQV-----TETPVRAGKFIA--RKNWIIVGSDDFRIRVFNYNTGEK   89 (814)
T ss_dssp             EEEECSSSSEEEEEETTSEEE-EEETTTTEEEEEEEC-----CSSCEEEEEEEG--GGTEEEEEETTSEEEEEETTTCCE
T ss_pred             EEEECCCCCEEEEEeCCCEEE-EEECCCCceEEEEec-----CCCcEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcE
Confidence            478899999999998764332 244332111 12221     245699988876  556788999999999999 67888


Q ss_pred             eeecccCccceeEEEEeeccCCCCcCCCCCeEEEEeCCe-EEEEeChhHHHHHHHHHHhccccccCCCCccCCCccccCc
Q 012917          112 VHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGV-LARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENS  190 (453)
Q Consensus       112 L~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~~-i~~idG~~L~~~L~~c~~~~~~~~w~~~~~~~~~~~~~~~  190 (453)
                      +..-.-|.++|..+.+...         ..-|.....+. |...|-.              .+            .  . 
T Consensus        90 ~~~~~~~~~~v~~~~~s~~---------~~~l~~~~~dg~i~vw~~~--------------~~------------~--~-  131 (814)
T 3mkq_A           90 VVDFEAHPDYIRSIAVHPT---------KPYVLSGSDDLTVKLWNWE--------------NN------------W--A-  131 (814)
T ss_dssp             EEEEECCSSCEEEEEECSS---------SSEEEEEETTSEEEEEEGG--------------GT------------S--E-
T ss_pred             EEEEecCCCCEEEEEEeCC---------CCEEEEEcCCCEEEEEECC--------------CC------------c--e-
Confidence            8777779999998885322         22244433332 2222100              00            0  0 


Q ss_pred             cCCccceecccCCCCceeeEEEeCcCCCCchhhcccccceEEEEeCCCceeEEEEeccCCCcchhhhhhhhhhhHHHHHH
Q 012917          191 YERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTI  270 (453)
Q Consensus       191 ~~~L~ykKW~l~~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P~la~y~~~e~~~~s~~~a~~S~va~av~S~~  270 (453)
                         + .+... .....+.++++.-            .....+++++.+-.|-+|......                    
T Consensus       132 ---~-~~~~~-~~~~~v~~~~~~p------------~~~~~l~~~~~dg~v~vwd~~~~~--------------------  174 (814)
T 3mkq_A          132 ---L-EQTFE-GHEHFVMCVAFNP------------KDPSTFASGCLDRTVKVWSLGQST--------------------  174 (814)
T ss_dssp             ---E-EEEEE-CCSSCEEEEEEET------------TEEEEEEEEETTSEEEEEETTCSS--------------------
T ss_pred             ---E-EEEEc-CCCCcEEEEEEEc------------CCCCEEEEEeCCCeEEEEECCCCc--------------------
Confidence               0 00000 0011223322210            000113333333333333221110                    


Q ss_pred             hhhhhccccCCCCCCCCCCCCCccccCCCCcccc-CCCCeeeEEEECC--CCCEEEEEcCCCcEEEEEcCCceEEEEecc
Q 012917          271 SSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLK-DHPRKGERLTLSP--SGSLAAITDSLGRILLLDTQALVVVRLWKG  347 (453)
Q Consensus       271 ~s~ak~~W~~~~~~~~~e~~p~~~~~a~pl~~l~-D~~R~~~~i~lsP--~~~laa~tDslGRV~LiD~~~~~ivRmWKG  347 (453)
                                                  +...+. ...+.+..++.+|  +++++++....|+|.++|+.++..++.++|
T Consensus       175 ----------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~  226 (814)
T 3mkq_A          175 ----------------------------PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG  226 (814)
T ss_dssp             ----------------------------CSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred             ----------------------------ceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcC
Confidence                                        001111 1225567788888  999999999999999999999999999998


Q ss_pred             cccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917          348 YRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCA  409 (453)
Q Consensus       348 yRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~  409 (453)
                      +.+. +..+...   +             +..  +++-+..+|.|.||+++++..+..+..+
T Consensus       227 ~~~~-v~~~~~~---~-------------~~~--~l~~~~~dg~v~vwd~~~~~~~~~~~~~  269 (814)
T 3mkq_A          227 HMSN-VSFAVFH---P-------------TLP--IIISGSEDGTLKIWNSSTYKVEKTLNVG  269 (814)
T ss_dssp             CSSC-EEEEEEC---S-------------SSS--EEEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred             CCCC-EEEEEEc---C-------------CCC--EEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence            7652 2222211   1             111  3445667899999999998877776654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=97.95  E-value=0.0031  Score=61.65  Aligned_cols=81  Identities=17%  Similarity=0.116  Sum_probs=58.4

Q ss_pred             ccCCCCeeeEEEECCCC-CEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEE
Q 012917          303 LKDHPRKGERLTLSPSG-SLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC  381 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~-~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~  381 (453)
                      |......+.+|+.+|+| +++|+....|.|.|+|+.++.+++ .+|+.+    +|....=.+.            ..  .
T Consensus       253 ~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H~~----~V~~v~~sp~------------~~--~  313 (344)
T 4gqb_B          253 SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAHRD----FVRDATWSPL------------NH--S  313 (344)
T ss_dssp             EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCCSS----CEEEEEECSS------------ST--T
T ss_pred             EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCCCC----CEEEEEEeCC------------CC--e
Confidence            44555678899999987 688888888999999999999887 489887    4433221110            11  2


Q ss_pred             EEEEcCCCCeEEEeecCCCCe
Q 012917          382 LAIHAPRKGIIEVWQMRTGPR  402 (453)
Q Consensus       382 LvIyaprRg~lEVW~~~~G~R  402 (453)
                      |+.-+..+|.|.+|++++.+.
T Consensus       314 llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          314 LLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             EEEEEETTSCEEEEECCC---
T ss_pred             EEEEEcCCCeEEEEECCCCCC
Confidence            556678899999999988654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=97.95  E-value=0.0057  Score=60.51  Aligned_cols=74  Identities=9%  Similarity=0.169  Sum_probs=56.1

Q ss_pred             CCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeec
Q 012917          318 SGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQM  397 (453)
Q Consensus       318 ~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~  397 (453)
                      +|.++++....|.|.++|+.++..++.++|+.+    |+....-.+.             ..  +++-+..+|.|.||++
T Consensus       307 ~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~----~v~~v~~~~~-------------g~--~l~s~s~D~~i~vwd~  367 (410)
T 1vyh_C          307 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN----WVRGVLFHSG-------------GK--FILSCADDKTLRVWDY  367 (410)
T ss_dssp             -CCEEEEEETTSEEEEEETTTTEEEEEEECCSS----CEEEEEECSS-------------SS--CEEEEETTTEEEEECC
T ss_pred             CCCEEEEEeCCCeEEEEECCCCceEEEEECCCC----cEEEEEEcCC-------------CC--EEEEEeCCCeEEEEEC
Confidence            578899988999999999999999999999887    5543322111             11  2346778999999999


Q ss_pred             CCCCeEEEEEecC
Q 012917          398 RTGPRLLTIQCAK  410 (453)
Q Consensus       398 ~~G~RV~a~~v~~  410 (453)
                      +++..+..+..+.
T Consensus       368 ~~~~~~~~~~~h~  380 (410)
T 1vyh_C          368 KNKRCMKTLNAHE  380 (410)
T ss_dssp             TTSCCCEEEECCS
T ss_pred             CCCceEEEEcCCC
Confidence            9999888776443

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.94  E-value=0.016  Score=55.73  Aligned_cols=89  Identities=11%  Similarity=0.082  Sum_probs=60.0

Q ss_pred             CeeeeccCcceeeeeecceEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEe-cCCcE
Q 012917           33 PNLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGDL  111 (453)
Q Consensus        33 ~~~~~sp~~~~la~A~~~~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt-e~G~L  111 (453)
                      +....+|+++.||.+.....+ .-|+-... ..  ...+.. ....|+++.|-|  +-..++.|..+|.|++|+ ++|..
T Consensus       101 ~~~~~~~~~~~l~~~~~dg~i-~iwd~~~~-~~--~~~~~~-h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~  173 (420)
T 3vl1_A          101 AVDTAKLQMRRFILGTTEGDI-KVLDSNFN-LQ--REIDQA-HVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSN  173 (420)
T ss_dssp             EEEEECSSSCEEEEEETTSCE-EEECTTSC-EE--EEETTS-SSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCC
T ss_pred             EEEEEecCCCEEEEEECCCCE-EEEeCCCc-ce--eeeccc-ccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcC
Confidence            344668899998888665432 22443321 11  112222 346799988865  556889999999999999 56777


Q ss_pred             eeecccCccceeEEEEe
Q 012917          112 VHRQLIHPGRILKLRVR  128 (453)
Q Consensus       112 L~sQ~lh~~pV~~ik~r  128 (453)
                      +..-.-|..+|..+.+.
T Consensus       174 ~~~~~~h~~~v~~~~~~  190 (420)
T 3vl1_A          174 PRTLIGHRATVTDIAII  190 (420)
T ss_dssp             CEEEECCSSCEEEEEEE
T ss_pred             ceEEcCCCCcEEEEEEc
Confidence            76666789999998864

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.92  E-value=0.0099  Score=57.59  Aligned_cols=83  Identities=20%  Similarity=0.211  Sum_probs=63.3

Q ss_pred             CccccCCCCeeeEEEECCCCCEEEEEcCCCc-EEEEEcCCceEEEEec-c-cccceeeEEEEEecccccccccccCCCCC
Q 012917          300 LTCLKDHPRKGERLTLSPSGSLAAITDSLGR-ILLLDTQALVVVRLWK-G-YRDASCVFMEMLVNKDAATSSAYYAPVKS  376 (453)
Q Consensus       300 l~~l~D~~R~~~~i~lsP~~~laa~tDslGR-V~LiD~~~~~ivRmWK-G-yRdAqc~Wi~~~~~~~~~~~~~~~~~~k~  376 (453)
                      +..+..+...+.+++.+|+|+++|++...|. |.|+|+.++..++.++ | +.+ .+.-+...   +             
T Consensus       188 ~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~-~v~~~~~s---~-------------  250 (355)
T 3vu4_A          188 GVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRA-DVVDMKWS---T-------------  250 (355)
T ss_dssp             CEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCS-CEEEEEEC---T-------------
T ss_pred             cEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCC-cEEEEEEC---C-------------
Confidence            4457777888999999999999999999998 9999999999999998 7 554 33222221   1             


Q ss_pred             CccEEEEEEcCCCCeEEEeecCCCC
Q 012917          377 DYCLCLAIHAPRKGIIEVWQMRTGP  401 (453)
Q Consensus       377 ~~~l~LvIyaprRg~lEVW~~~~G~  401 (453)
                      +..  +++-+..+|.|.||+++++.
T Consensus       251 ~~~--~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          251 DGS--KLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             TSC--EEEEEETTCEEEEEESSCCS
T ss_pred             CCC--EEEEEECCCEEEEEEccCCC
Confidence            111  34556779999999998763

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=97.89  E-value=0.0026  Score=60.90  Aligned_cols=86  Identities=14%  Similarity=0.165  Sum_probs=61.6

Q ss_pred             CCeeeEEEECCCC-CEEEEEcCCC---cEEEEEcCCc-eEEEEec-ccccceeeEEEEEecccccccccccCCCCCCccE
Q 012917          307 PRKGERLTLSPSG-SLAAITDSLG---RILLLDTQAL-VVVRLWK-GYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (453)
Q Consensus       307 ~R~~~~i~lsP~~-~laa~tDslG---RV~LiD~~~~-~ivRmWK-GyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (453)
                      ...+.+++.+|++ ++++++...|   .|.++|+.++ ..++.++ |+..    .+....-.+          .  +.. 
T Consensus       214 ~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~----~v~~~~~s~----------~--~~~-  276 (416)
T 2pm9_A          214 KQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQK----GILSLDWCH----------Q--DEH-  276 (416)
T ss_dssp             CCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSS----CEEEEEECS----------S--CSS-
T ss_pred             CCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccC----ceeEEEeCC----------C--CCC-
Confidence            4568899999987 6788877777   9999999997 7888888 7765    232221110          0  111 


Q ss_pred             EEEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917          381 CLAIHAPRKGIIEVWQMRTGPRLLTIQCAK  410 (453)
Q Consensus       381 ~LvIyaprRg~lEVW~~~~G~RV~a~~v~~  410 (453)
                       +++-+-.+|.|.||+++++..+..+..+.
T Consensus       277 -~l~s~~~dg~v~~wd~~~~~~~~~~~~~~  305 (416)
T 2pm9_A          277 -LLLSSGRDNTVLLWNPESAEQLSQFPARG  305 (416)
T ss_dssp             -CEEEEESSSEEEEECSSSCCEEEEEECSS
T ss_pred             -eEEEEeCCCCEEEeeCCCCccceeecCCC
Confidence             34556679999999999999998887543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=97.89  E-value=0.0024  Score=62.16  Aligned_cols=79  Identities=16%  Similarity=0.088  Sum_probs=54.2

Q ss_pred             CCCeeeEEEECCCC-CEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEE
Q 012917          306 HPRKGERLTLSPSG-SLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI  384 (453)
Q Consensus       306 ~~R~~~~i~lsP~~-~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI  384 (453)
                      ....+.+|+.+|++ +++|+....|.|.|+|+.++.+++.. |+++    +|....=.+          .  +..  +++
T Consensus       268 ~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~----~V~~vafsP----------~--d~~--~l~  328 (357)
T 4g56_B          268 HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRD----FVTGVAWSP----------L--DHS--KFT  328 (357)
T ss_dssp             CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSS----CEEEEEECS----------S--STT--EEE
T ss_pred             cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCC----CEEEEEEeC----------C--CCC--EEE
Confidence            34557889999987 68888888899999999999999864 7877    443322111          0  111  346


Q ss_pred             EcCCCCeEEEeecCCCCeE
Q 012917          385 HAPRKGIIEVWQMRTGPRL  403 (453)
Q Consensus       385 yaprRg~lEVW~~~~G~RV  403 (453)
                      -+..+|.|.||+++...|.
T Consensus       329 s~s~Dg~v~iW~~~~~~~~  347 (357)
T 4g56_B          329 TVGWDHKVLHHHLPSEGRT  347 (357)
T ss_dssp             EEETTSCEEEEECC-----
T ss_pred             EEcCCCeEEEEECCCCCcc
Confidence            7788999999999875444

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.88  E-value=0.024  Score=55.68  Aligned_cols=85  Identities=21%  Similarity=0.316  Sum_probs=59.5

Q ss_pred             eeeccCcceeeeeecceEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEe-cCCcEee
Q 012917           35 LLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGDLVH  113 (453)
Q Consensus        35 ~~~sp~~~~la~A~~~~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt-e~G~LL~  113 (453)
                      ++=|++ ++||+|.+..+-+  |+-.. +++.-.-.+.. .++.||++.|-|  |-..+++|..+|.|++|+ ++|.++.
T Consensus       111 l~wS~~-n~lAvgld~tV~l--Wd~~t-g~~~~~~~~~~-~~~~V~sv~fsp--dg~~lasgs~Dg~v~iWd~~~~~~~~  183 (420)
T 4gga_A          111 VDWSSG-NVLAVALDNSVYL--WSASS-GDILQLLQMEQ-PGEYISSVAWIK--EGNYLAVGTSSAEVQLWDVQQQKRLR  183 (420)
T ss_dssp             EEECTT-SEEEEEETTEEEE--EETTT-CCEEEEEECCS-TTCCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEECCC-CEEEEEeCCEEEE--EECCC-CCEEEEEEecC-CCCcEEEEEECC--CCCEEEEEECCCeEEEEEcCCCcEEE
Confidence            444654 5889998886544  54432 22222222322 457799999865  667899999999999999 6688888


Q ss_pred             ecccCccceeEEE
Q 012917          114 RQLIHPGRILKLR  126 (453)
Q Consensus       114 sQ~lh~~pV~~ik  126 (453)
                      .-.-|..+|..+.
T Consensus       184 ~~~~h~~~v~~~s  196 (420)
T 4gga_A          184 NMTSHSARVGSLS  196 (420)
T ss_dssp             EECCCSSCEEEEE
T ss_pred             EEeCCCCceEEEe
Confidence            7777888877765

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.87  E-value=0.011  Score=55.82  Aligned_cols=276  Identities=9%  Similarity=0.034  Sum_probs=145.3

Q ss_pred             eeeecc-Ccceeeeeecce-EEEEeecCCCC-CceeEee--cC----CCCCCCcEEEEEEEEeCCcEEEEEeccccEEEE
Q 012917           34 NLLCAL-DMHTIALANRYQ-TVIINWADPEG-LVAKIRP--EL----SPIASEYITAIEWLVFEEMRALAVGTSRGYFLV  104 (453)
Q Consensus        34 ~~~~sp-~~~~la~A~~~~-~v~~~w~~~~~-~~~~~~g--~l----~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrf  104 (453)
                      .++.+| ++++||.+.... +.+-....... .......  .+    .......|+++.|.|- +-..++.|..+|.|++
T Consensus        48 ~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~i  126 (408)
T 4a11_B           48 TLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH-DTGMFTSSSFDKTLKV  126 (408)
T ss_dssp             EEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT-CTTCEEEEETTSEEEE
T ss_pred             EEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC-CCcEEEEEeCCCeEEE
Confidence            467789 999988886553 33322222111 1111111  00    0113577999988774 4447888899999999


Q ss_pred             EecCCcEeeecccCccceeEEEEeeccCCCCcCCCCCeEEEEeCCe-EEEEeChhHHHHHHHHHHhccccccCCCCccCC
Q 012917          105 YDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGV-LARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRD  183 (453)
Q Consensus       105 yte~G~LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~~-i~~idG~~L~~~L~~c~~~~~~~~w~~~~~~~~  183 (453)
                      |+..........-|+.++..+.+-....      ...-+.+...+. |...|-..              +       +  
T Consensus       127 wd~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~v~~~d~~~--------------~-------~--  177 (408)
T 4a11_B          127 WDTNTLQTADVFNFEETVYSHHMSPVST------KHCLVAVGTRGPKVQLCDLKS--------------G-------S--  177 (408)
T ss_dssp             EETTTTEEEEEEECSSCEEEEEECSSCS------SCCEEEEEESSSSEEEEESSS--------------S-------C--
T ss_pred             eeCCCCccceeccCCCceeeeEeecCCC------CCcEEEEEcCCCeEEEEeCCC--------------c-------c--
Confidence            9965444444444677777777543321      012233333332 22222100              0       0  


Q ss_pred             CccccCccCCccceecccC-CCCceeeEEEeCcCCCCchhhcccccceEEEEeCCCceeEEEEeccCCCcchhhhhhhhh
Q 012917          184 SEDLENSYERLPHQLWNVS-KYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKV  262 (453)
Q Consensus       184 ~~~~~~~~~~L~ykKW~l~-~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P~la~y~~~e~~~~s~~~a~~S~v  262 (453)
                           . .       ..+. ..+.+...++.-            .+.+.+++.+.+-.|-+|.........         
T Consensus       178 -----~-~-------~~~~~~~~~v~~~~~~~------------~~~~ll~~~~~dg~i~i~d~~~~~~~~---------  223 (408)
T 4a11_B          178 -----C-S-------HILQGHRQEILAVSWSP------------RYDYILATASADSRVKLWDVRRASGCL---------  223 (408)
T ss_dssp             -----C-C-------EEECCCCSCEEEEEECS------------SCTTEEEEEETTSCEEEEETTCSSCCS---------
T ss_pred             -----e-e-------eeecCCCCcEEEEEECC------------CCCcEEEEEcCCCcEEEEECCCCCccc---------
Confidence                 0 0       0011 122344444321            122235666777777777665433220         


Q ss_pred             hhHHHHHHhhhhhccccCCCCCCCCCCCCCccccCCCCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEE
Q 012917          263 VPATFSTISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVV  342 (453)
Q Consensus       263 a~av~S~~~s~ak~~W~~~~~~~~~e~~p~~~~~a~pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~iv  342 (453)
                              ..     +....    . ...     ......+......+.+++.+|++++++++...|.|.++|+.++..+
T Consensus       224 --------~~-----~~~~~----~-~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  280 (408)
T 4a11_B          224 --------IT-----LDQHN----G-KKS-----QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENT  280 (408)
T ss_dssp             --------EE-----CCTTT----T-CSC-----CCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBC
T ss_pred             --------cc-----ccccc----c-ccc-----eeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccc
Confidence                    00     00000    0 000     0111224455667899999999999999999999999999999877


Q ss_pred             EEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917          343 RLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAK  410 (453)
Q Consensus       343 RmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~  410 (453)
                      +...+......         ... ........  ...  .++++...|.|.||++++|..+..+..+.
T Consensus       281 ~~~~~~~~~~~---------~~~-~~~~~~~~--~~~--~~~~~~~~~~i~v~d~~~~~~~~~~~~~~  334 (408)
T 4a11_B          281 LVNYGKVCNNS---------KKG-LKFTVSCG--CSS--EFVFVPYGSTIAVYTVYSGEQITMLKGHY  334 (408)
T ss_dssp             CCCCCCCCCCC---------SSC-CCCEECCS--SSS--CEEEEEETTEEEEEETTTCCEEEEECCCS
T ss_pred             eeccccccccc---------ccc-ceeEEecC--CCc--eEEEEecCCEEEEEECcCCcceeeeccCC
Confidence            76654322100         000 00000000  011  23556778999999999999988876544

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=97.87  E-value=0.0081  Score=57.46  Aligned_cols=69  Identities=13%  Similarity=0.076  Sum_probs=54.3

Q ss_pred             eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCC
Q 012917          309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPR  388 (453)
Q Consensus       309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyapr  388 (453)
                      .+.+++.+|+|+++++....|.|.++|+.++..++.++|+.+    +|....-.+.             .  .+++-+..
T Consensus       272 ~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~----~v~~~~~s~d-------------g--~~l~s~s~  332 (340)
T 1got_B          272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN----RVSCLGVTDD-------------G--MAVATGSW  332 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS----CEEEEEECTT-------------S--SCEEEEET
T ss_pred             ceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC----cEEEEEEcCC-------------C--CEEEEEcC
Confidence            467899999999999999999999999999999999999987    4433222111             1  13456778


Q ss_pred             CCeEEEee
Q 012917          389 KGIIEVWQ  396 (453)
Q Consensus       389 Rg~lEVW~  396 (453)
                      +|.|.||+
T Consensus       333 D~~i~iWd  340 (340)
T 1got_B          333 DSFLKIWN  340 (340)
T ss_dssp             TSCEEEEC
T ss_pred             CccEEecC
Confidence            99999996

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=97.85  E-value=0.018  Score=53.28  Aligned_cols=82  Identities=21%  Similarity=0.246  Sum_probs=61.0

Q ss_pred             CCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEE
Q 012917          305 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI  384 (453)
Q Consensus       305 D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI  384 (453)
                      .....+.+|+.+|+++++|++...|.|.|+|+.++..++..++.....+...     .+          .  ..  ++  
T Consensus       213 ~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~-----~~----------~--~~--~~--  271 (340)
T 4aow_A          213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCF-----SP----------N--RY--WL--  271 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEE-----CS----------S--SS--EE--
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeec-----CC----------C--Cc--ee--
Confidence            3445678899999999999999999999999999999999988654222111     11          1  11  32  


Q ss_pred             EcCCCCeEEEeecCCCCeEEEEE
Q 012917          385 HAPRKGIIEVWQMRTGPRLLTIQ  407 (453)
Q Consensus       385 yaprRg~lEVW~~~~G~RV~a~~  407 (453)
                      -+...|.|.||+++++..+..+.
T Consensus       272 ~~~~d~~i~iwd~~~~~~~~~~~  294 (340)
T 4aow_A          272 CAATGPSIKIWDLEGKIIVDELK  294 (340)
T ss_dssp             EEEETTEEEEEETTTTEEEEEEC
T ss_pred             eccCCCEEEEEECCCCeEEEecc
Confidence            34468999999999888877665

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.84  E-value=0.0045  Score=58.12  Aligned_cols=85  Identities=6%  Similarity=-0.067  Sum_probs=64.0

Q ss_pred             CCeeeEEEECCCCCEEEEEcCCCcEEEEEc------------------CCceEEEEecccccceeeEEEEEecccccccc
Q 012917          307 PRKGERLTLSPSGSLAAITDSLGRILLLDT------------------QALVVVRLWKGYRDASCVFMEMLVNKDAATSS  368 (453)
Q Consensus       307 ~R~~~~i~lsP~~~laa~tDslGRV~LiD~------------------~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~  368 (453)
                      ...+.+++.+|++++++++...|.|.++|+                  ..+..++.++++.+    .+....-.+     
T Consensus       142 ~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~-----  212 (372)
T 1k8k_C          142 RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG----WVHGVCFSA-----  212 (372)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS----CEEEEEECS-----
T ss_pred             CCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCC----eEEEEEECC-----
Confidence            456889999999999999999999999995                  47889999987765    332221111     


Q ss_pred             cccCCCCCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917          369 AYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAK  410 (453)
Q Consensus       369 ~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~  410 (453)
                              +..  +++.+-.+|.|.||+++++..+..+..+.
T Consensus       213 --------~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  244 (372)
T 1k8k_C          213 --------NGS--RVAWVSHDSTVCLADADKKMAVATLASET  244 (372)
T ss_dssp             --------SSS--EEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred             --------CCC--EEEEEeCCCEEEEEECCCCceeEEEccCC
Confidence                    111  44566789999999999999998887553

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.81  E-value=0.0032  Score=58.51  Aligned_cols=83  Identities=12%  Similarity=0.029  Sum_probs=58.1

Q ss_pred             CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917          308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP  387 (453)
Q Consensus       308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap  387 (453)
                      ..+.+++.+|+++++|+++..|.|.++|+.++..++.++++.+    .+....=.+.             ..  +++.+-
T Consensus       274 ~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~v~~~~~s~~-------------g~--~l~~~s  334 (368)
T 3mmy_A          274 YAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQ----PISACCFNHN-------------GN--IFAYAS  334 (368)
T ss_dssp             CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS----CEEEEEECTT-------------SS--CEEEEE
T ss_pred             cceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCC----CceEEEECCC-------------CC--eEEEEe
Confidence            4578999999999999999999999999999999999999876    3322211110             01  223343


Q ss_pred             CC---CeEEEeecCCCCeEEEEEec
Q 012917          388 RK---GIIEVWQMRTGPRLLTIQCA  409 (453)
Q Consensus       388 rR---g~lEVW~~~~G~RV~a~~v~  409 (453)
                      .+   ..+++|+.+..+++...++.
T Consensus       335 ~d~~~~~~~~~~~~~~~~i~~~~~~  359 (368)
T 3mmy_A          335 SYDWSKGHEFYNPQKKNYIFLRNAA  359 (368)
T ss_dssp             CCCSTTCGGGCCTTSCCEEEEECCT
T ss_pred             cccccccccccCCCccceeeehhcC
Confidence            33   35667777777777665543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=97.77  E-value=0.013  Score=55.98  Aligned_cols=89  Identities=11%  Similarity=0.166  Sum_probs=57.6

Q ss_pred             eeecc-CcceeeeeecceEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEecCCcEee
Q 012917           35 LLCAL-DMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVH  113 (453)
Q Consensus        35 ~~~sp-~~~~la~A~~~~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~G~LL~  113 (453)
                      ++.+| +++.|+.+.....+. -|+-.+.....+.+.-  .....|+++.|-|  +-..+++|..+|.|++|+.+|..+.
T Consensus       124 ~~~~~~~~~~l~s~~~d~~i~-iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~  198 (383)
T 3ei3_B          124 MKFNQFNTNQLFVSSIRGATT-LRDFSGSVIQVFAKTD--SWDYWYCCVDVSV--SRQMLATGDSTGRLLLLGLDGHEIF  198 (383)
T ss_dssp             EEEETTEEEEEEEEETTTEEE-EEETTSCEEEEEECCC--CSSCCEEEEEEET--TTTEEEEEETTSEEEEEETTSCEEE
T ss_pred             EEeCCCCCCEEEEEeCCCEEE-EEECCCCceEEEeccC--CCCCCeEEEEECC--CCCEEEEECCCCCEEEEECCCCEEE
Confidence            44566 556666555443222 2443321111222211  1236688887764  6668999999999999999999988


Q ss_pred             ecccCccceeEEEEe
Q 012917          114 RQLIHPGRILKLRVR  128 (453)
Q Consensus       114 sQ~lh~~pV~~ik~r  128 (453)
                      .-.-|..+|..+.+.
T Consensus       199 ~~~~h~~~v~~~~~~  213 (383)
T 3ei3_B          199 KEKLHKAKVTHAEFN  213 (383)
T ss_dssp             EEECSSSCEEEEEEC
T ss_pred             EeccCCCcEEEEEEC
Confidence            888899999998853

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=97.75  E-value=0.0052  Score=58.82  Aligned_cols=82  Identities=13%  Similarity=0.021  Sum_probs=61.5

Q ss_pred             CCCCeeeEEEECC-CCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEE
Q 012917          305 DHPRKGERLTLSP-SGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLA  383 (453)
Q Consensus       305 D~~R~~~~i~lsP-~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~Lv  383 (453)
                      .....+.+++.+| +++++++....|+|.++|+.++..++.++++.+    ++....-.+          .  ..  .++
T Consensus       260 ~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~----~v~~~~~s~----------~--~~--~~l  321 (416)
T 2pm9_A          260 GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN----WCFKTKFAP----------E--AP--DLF  321 (416)
T ss_dssp             CCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS----CCCCEEECT----------T--CT--TEE
T ss_pred             CccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC----ceEEEEECC----------C--CC--CEE
Confidence            4456788999999 899999999999999999999999999998775    221111100          0  00  155


Q ss_pred             EEcCCCCeEEEeecCCCCeEE
Q 012917          384 IHAPRKGIIEVWQMRTGPRLL  404 (453)
Q Consensus       384 IyaprRg~lEVW~~~~G~RV~  404 (453)
                      +.+-.+|.|.||+++++....
T Consensus       322 ~s~~~d~~i~iw~~~~~~~~~  342 (416)
T 2pm9_A          322 ACASFDNKIEVQTLQNLTNTL  342 (416)
T ss_dssp             EECCSSSEEEEEESCCCCCSS
T ss_pred             EEEecCCcEEEEEccCCCCCc
Confidence            778889999999999877543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.67  E-value=0.022  Score=56.13  Aligned_cols=86  Identities=20%  Similarity=0.288  Sum_probs=58.3

Q ss_pred             CeeeeccCcceeeeeecceEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEe-cCCcE
Q 012917           33 PNLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGDL  111 (453)
Q Consensus        33 ~~~~~sp~~~~la~A~~~~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt-e~G~L  111 (453)
                      .+.+++++++.|+.+.....|. -|+-... ...  ..+.. ....|+++.+    +-..+++|..+|.|++|+ ++|.+
T Consensus       135 ~v~~~~~d~~~l~~g~~dg~i~-iwd~~~~-~~~--~~~~~-h~~~v~~l~~----~~~~l~sg~~dg~i~vwd~~~~~~  205 (435)
T 1p22_A          135 GVYCLQYDDQKIVSGLRDNTIK-IWDKNTL-ECK--RILTG-HTGSVLCLQY----DERVIITGSSDSTVRVWDVNTGEM  205 (435)
T ss_dssp             CEEEEECCSSEEEEEESSSCEE-EEESSSC-CEE--EEECC-CSSCEEEEEC----CSSEEEEEETTSCEEEEESSSCCE
T ss_pred             cEEEEEECCCEEEEEeCCCeEE-EEeCCCC-eEE--EEEcC-CCCcEEEEEE----CCCEEEEEcCCCeEEEEECCCCcE
Confidence            5778888888888776653322 2433221 111  11222 2456887766    667999999999999999 66888


Q ss_pred             eeecccCccceeEEEE
Q 012917          112 VHRQLIHPGRILKLRV  127 (453)
Q Consensus       112 L~sQ~lh~~pV~~ik~  127 (453)
                      +..-.-|.++|..+..
T Consensus       206 ~~~~~~h~~~v~~l~~  221 (435)
T 1p22_A          206 LNTLIHHCEAVLHLRF  221 (435)
T ss_dssp             EEEECCCCSCEEEEEC
T ss_pred             EEEEcCCCCcEEEEEE
Confidence            8777778889888875

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.65  E-value=0.036  Score=50.85  Aligned_cols=78  Identities=10%  Similarity=0.087  Sum_probs=55.0

Q ss_pred             CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917          308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP  387 (453)
Q Consensus       308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap  387 (453)
                      ....+++.+|++++++++...|.|.++|+.++...+ .+++.+    .+....-.+             +..  +++.+-
T Consensus       225 ~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~~~~~----~v~~~~~~~-------------~~~--~l~~~~  284 (337)
T 1gxr_A          225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHES----CVLSLKFAY-------------CGK--WFVSTG  284 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCCSS----CEEEEEECT-------------TSS--EEEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-EcCCcc----ceeEEEECC-------------CCC--EEEEec
Confidence            346789999999999999999999999999988654 344443    221111111             111  335566


Q ss_pred             CCCeEEEeecCCCCeEEE
Q 012917          388 RKGIIEVWQMRTGPRLLT  405 (453)
Q Consensus       388 rRg~lEVW~~~~G~RV~a  405 (453)
                      .+|.|.||+++++..+..
T Consensus       285 ~dg~i~~~~~~~~~~~~~  302 (337)
T 1gxr_A          285 KDNLLNAWRTPYGASIFQ  302 (337)
T ss_dssp             TTSEEEEEETTTCCEEEE
T ss_pred             CCCcEEEEECCCCeEEEE
Confidence            799999999999988744

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=97.64  E-value=0.016  Score=61.18  Aligned_cols=89  Identities=18%  Similarity=0.221  Sum_probs=62.8

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (453)
                      +..+...+.+++.+|+|+++++....|.|.|+|+.++..++..++...     +....-.+             +. .+|
T Consensus       557 ~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~-----v~~~~~sp-------------~~-~~l  617 (694)
T 3dm0_A          557 LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV-----IHALCFSP-------------NR-YWL  617 (694)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSC-----EEEEEECS-------------SS-SEE
T ss_pred             EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCc-----EEEEEEcC-------------CC-cEE
Confidence            445566788999999999999999999999999999998887765321     21111111             11 133


Q ss_pred             EEEcCCCCeEEEeecCCCCeEEEEEecCCe
Q 012917          383 AIHAPRKGIIEVWQMRTGPRLLTIQCAKGS  412 (453)
Q Consensus       383 vIyaprRg~lEVW~~~~G~RV~a~~v~~~~  412 (453)
                      +.  ..++.|.||+++++..+..+......
T Consensus       618 ~~--~~~~~i~iwd~~~~~~~~~~~~~~~~  645 (694)
T 3dm0_A          618 CA--ATEHGIKIWDLESKSIVEDLKVDLKA  645 (694)
T ss_dssp             EE--EETTEEEEEETTTTEEEEEECCCCC-
T ss_pred             EE--EcCCCEEEEECCCCCChhhhcccccc
Confidence            32  34566999999999999888765443

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=97.61  E-value=0.044  Score=50.90  Aligned_cols=92  Identities=14%  Similarity=0.140  Sum_probs=60.2

Q ss_pred             eeeccC---cc--eeeeeecceEEEEeecCCCCCce-eEeecCCCCCCCcEEEEEEEEeCC--cEEEEEeccccEEEEEe
Q 012917           35 LLCALD---MH--TIALANRYQTVIINWADPEGLVA-KIRPELSPIASEYITAIEWLVFEE--MRALAVGTSRGYFLVYD  106 (453)
Q Consensus        35 ~~~sp~---~~--~la~A~~~~~v~~~w~~~~~~~~-~~~g~l~~~~~e~ITs~~~lp~~d--w~~I~VG~ssG~vrfyt  106 (453)
                      ++.+|.   ++  ++|.+....+.+  |+-.....+ .+.+...+...+.|+++.|-|-..  -..+++|..+|.|++|+
T Consensus        24 i~~~p~~~~~~~~~~~~~~~~~v~v--w~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d  101 (366)
T 3k26_A           24 VQFNWHSKEGDPLVFATVGSNRVTL--YECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIIN  101 (366)
T ss_dssp             EEECTTCCTTSCEEEEEEETTEEEE--EEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEEC
T ss_pred             EEEecccCCCCceEEEECCCCEEEE--EEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEE
Confidence            556663   44  545554554444  332221122 333333322457899999998743  57999999999999999


Q ss_pred             -cCCcEeeecccCccceeEEEEe
Q 012917          107 -LKGDLVHRQLIHPGRILKLRVR  128 (453)
Q Consensus       107 -e~G~LL~sQ~lh~~pV~~ik~r  128 (453)
                       ++|.++..-.-|..+|..|++.
T Consensus       102 ~~~~~~~~~~~~~~~~i~~~~~~  124 (366)
T 3k26_A          102 PITMQCIKHYVGHGNAINELKFH  124 (366)
T ss_dssp             TTTCCEEEEEESCCSCEEEEEEC
T ss_pred             chhceEeeeecCCCCcEEEEEEC
Confidence             5588777666799999999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=97.55  E-value=0.00057  Score=66.88  Aligned_cols=88  Identities=15%  Similarity=0.162  Sum_probs=68.1

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (453)
                      +..+...+.+|+.+|+|+++|+....|.|.|+|+.++..++.++|+.+    .|....-...            ...  +
T Consensus       123 ~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~----~V~~~~~~~~------------~~~--~  184 (344)
T 4gqb_B          123 KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA----QVTCVAASPH------------KDS--V  184 (344)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS----CEEEEEECSS------------CTT--E
T ss_pred             ccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC----ceEEEEecCC------------CCC--c
Confidence            445667789999999999999999999999999999999999999987    3433221110            111  3


Q ss_pred             EEEcCCCCeEEEeecCCCCeEEEEEe
Q 012917          383 AIHAPRKGIIEVWQMRTGPRLLTIQC  408 (453)
Q Consensus       383 vIyaprRg~lEVW~~~~G~RV~a~~v  408 (453)
                      ++-+..+|.|.||+++++..+..+..
T Consensus       185 l~s~s~D~~v~iwd~~~~~~~~~~~~  210 (344)
T 4gqb_B          185 FLSCSEDNRILLWDTRCPKPASQIGC  210 (344)
T ss_dssp             EEEEETTSCEEEEETTSSSCEEECC-
T ss_pred             eeeeccccccccccccccceeeeeec
Confidence            45677899999999999988776643

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.53  E-value=0.019  Score=64.27  Aligned_cols=88  Identities=16%  Similarity=0.172  Sum_probs=63.5

Q ss_pred             eeeeccCcceeeeeecceEEEEeecCCCCCc-eeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEe-cCCcE
Q 012917           34 NLLCALDMHTIALANRYQTVIINWADPEGLV-AKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGDL  111 (453)
Q Consensus        34 ~~~~sp~~~~la~A~~~~~v~~~w~~~~~~~-~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt-e~G~L  111 (453)
                      .++.||+++.||.+....-|. -|+-..... -++.+     ....|+++.+.|-.+...++.|..+|.|++|+ ++|..
T Consensus       662 ~~~~s~~~~~l~s~~~d~~v~-vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~  735 (1249)
T 3sfz_A          662 CCAFSSDDSYIATCSADKKVK-IWDSATGKLVHTYDE-----HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC  735 (1249)
T ss_dssp             EEEECTTSSEEEEEETTSEEE-EEETTTCCEEEEEEC-----CSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE
T ss_pred             EEEEecCCCEEEEEeCCCeEE-EEECCCCceEEEEcC-----CCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch
Confidence            367789998888876654322 244332211 22332     34679999888876778999999999999999 66888


Q ss_pred             eeecccCccceeEEEE
Q 012917          112 VHRQLIHPGRILKLRV  127 (453)
Q Consensus       112 L~sQ~lh~~pV~~ik~  127 (453)
                      +..-.-|..+|..+.+
T Consensus       736 ~~~~~~h~~~v~~~~~  751 (1249)
T 3sfz_A          736 RNTMFGHTNSVNHCRF  751 (1249)
T ss_dssp             EEEECCCSSCEEEEEE
T ss_pred             hheecCCCCCEEEEEE
Confidence            8777789999998885

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=97.52  E-value=0.065  Score=51.77  Aligned_cols=86  Identities=9%  Similarity=0.084  Sum_probs=62.6

Q ss_pred             ccCCCCeeeEEEECC--CCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccE
Q 012917          303 LKDHPRKGERLTLSP--SGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (453)
Q Consensus       303 l~D~~R~~~~i~lsP--~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (453)
                      +......+..+.++|  +|++++++...|.|.++|+.++..++.++|+.+    ++....-.+             +.. 
T Consensus       192 ~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~----~v~~v~~~p-------------~~~-  253 (354)
T 2pbi_B          192 FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES----DVNSVRYYP-------------SGD-  253 (354)
T ss_dssp             EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSS----CEEEEEECT-------------TSS-
T ss_pred             EcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC----CeEEEEEeC-------------CCC-
Confidence            333444566777877  578999999999999999999999999999877    443322111             011 


Q ss_pred             EEEEEcCCCCeEEEeecCCCCeEEEEE
Q 012917          381 CLAIHAPRKGIIEVWQMRTGPRLLTIQ  407 (453)
Q Consensus       381 ~LvIyaprRg~lEVW~~~~G~RV~a~~  407 (453)
                       +++-+..+|.|.||+++.+..+..+.
T Consensus       254 -~l~s~s~D~~v~lwd~~~~~~~~~~~  279 (354)
T 2pbi_B          254 -AFASGSDDATCRLYDLRADREVAIYS  279 (354)
T ss_dssp             -EEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             -EEEEEeCCCeEEEEECCCCcEEEEEc
Confidence             34567789999999999887665554

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.48  E-value=0.041  Score=51.06  Aligned_cols=79  Identities=11%  Similarity=0.058  Sum_probs=56.4

Q ss_pred             CCeeeEEEECC---CCCEEEEEcCCCcEEEEEcCCceEEEEec-----ccccceeeEEEEEecccccccccccCCCCCCc
Q 012917          307 PRKGERLTLSP---SGSLAAITDSLGRILLLDTQALVVVRLWK-----GYRDASCVFMEMLVNKDAATSSAYYAPVKSDY  378 (453)
Q Consensus       307 ~R~~~~i~lsP---~~~laa~tDslGRV~LiD~~~~~ivRmWK-----GyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~  378 (453)
                      ...+.+++.+|   ++++++++...|+|.++|+.++..++.++     ++.+    .+....-.+             + 
T Consensus       209 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~-------------~-  270 (357)
T 3i2n_A          209 KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKS----TVWQVRHLP-------------Q-  270 (357)
T ss_dssp             SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSS----CEEEEEEET-------------T-
T ss_pred             CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcC----CEEEEEECC-------------C-
Confidence            35678899999   89999999999999999999987776655     5544    222111100             1 


Q ss_pred             cEEEEEEcCCCCeEEEeecCCCCeE
Q 012917          379 CLCLAIHAPRKGIIEVWQMRTGPRL  403 (453)
Q Consensus       379 ~l~LvIyaprRg~lEVW~~~~G~RV  403 (453)
                      .-.+++-+..+|.|.||+++++.+.
T Consensus       271 ~~~~l~~~~~dg~i~iwd~~~~~~~  295 (357)
T 3i2n_A          271 NRELFLTAGGAGGLHLWKYEYPIQR  295 (357)
T ss_dssp             EEEEEEEEETTSEEEEEEEECCSCC
T ss_pred             CCcEEEEEeCCCcEEEeecCCCccc
Confidence            1135677788999999999987644

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=97.48  E-value=0.011  Score=56.29  Aligned_cols=228  Identities=10%  Similarity=0.004  Sum_probs=117.9

Q ss_pred             eeeeccCcceeeeeecc-eEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEecC-Cc-
Q 012917           34 NLLCALDMHTIALANRY-QTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLK-GD-  110 (453)
Q Consensus        34 ~~~~sp~~~~la~A~~~-~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~-G~-  110 (453)
                      .++.+|++++||.+... .+.+-.....   .......+.. ....|+++.|-|  |-..++.|..+|.|++|+.. |. 
T Consensus        16 ~~~~s~~g~~l~~~~~d~~i~iw~~~~~---~~~~~~~~~~-h~~~v~~~~~s~--~~~~l~s~s~d~~v~vwd~~~~~~   89 (377)
T 3dwl_C           16 EHAFNSQRTEFVTTTATNQVELYEQDGN---GWKHARTFSD-HDKIVTCVDWAP--KSNRIVTCSQDRNAYVYEKRPDGT   89 (377)
T ss_dssp             CCEECSSSSEEECCCSSSCBCEEEEETT---EEEECCCBCC-CSSCEEEEEECT--TTCCEEEEETTSSEEEC------C
T ss_pred             EEEECCCCCEEEEecCCCEEEEEEccCC---ceEEEEEEec-CCceEEEEEEeC--CCCEEEEEeCCCeEEEEEcCCCCc
Confidence            46788999999988443 3333222211   1111222322 346788887764  55678899999999999944 54 


Q ss_pred             --EeeecccCccceeEEEEeeccCCCCcCCCCCeEEEEeCCeEEEEeChhHHHHHHHHHHhccccccCCCCccCCCcccc
Q 012917          111 --LVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLE  188 (453)
Q Consensus       111 --LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~~i~~idG~~L~~~L~~c~~~~~~~~w~~~~~~~~~~~~~  188 (453)
                        .+..-.-|..+|..+.+...         .+.|.....+..+++                    |+-...+    .  
T Consensus        90 ~~~~~~~~~~~~~v~~~~~~~~---------~~~l~~~~~d~~i~i--------------------wd~~~~~----~--  134 (377)
T 3dwl_C           90 WKQTLVLLRLNRAATFVRWSPN---------EDKFAVGSGARVISV--------------------CYFEQEN----D--  134 (377)
T ss_dssp             CCCEEECCCCSSCEEEEECCTT---------SSCCEEEESSSCEEE--------------------CCC-----------
T ss_pred             eeeeeEecccCCceEEEEECCC---------CCEEEEEecCCeEEE--------------------EEECCcc----c--
Confidence              34444458888888875321         222333333322211                    1100000    0  


Q ss_pred             CccCCccceecccCCCCceeeEEEeCcCCCCchhhcccccceEEEEeCCCceeEEEEeccCCCcchhhhhhhhhhhHHHH
Q 012917          189 NSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFS  268 (453)
Q Consensus       189 ~~~~~L~ykKW~l~~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P~la~y~~~e~~~~s~~~a~~S~va~av~S  268 (453)
                        .  -..+...-.....+.+.++.-            .+ ..+++.+.+-.+-+|......-..           .   
T Consensus       135 --~--~~~~~~~~~h~~~v~~~~~~~------------~~-~~l~~~~~d~~i~iwd~~~~~~~~-----------~---  183 (377)
T 3dwl_C          135 --W--WVSKHLKRPLRSTILSLDWHP------------NN-VLLAAGCADRKAYVLSAYVRDVDA-----------K---  183 (377)
T ss_dssp             --C--CCCEEECSSCCSCEEEEEECT------------TS-SEEEEEESSSCEEEEEECCSSCC------------C---
T ss_pred             --c--eeeeEeecccCCCeEEEEEcC------------CC-CEEEEEeCCCEEEEEEEEecccCC-----------C---
Confidence              0  000000000123455544421            01 125555666666666553211000           0   


Q ss_pred             HHhhhhhccccCCCCCCCCCCCCCccccCCCCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceE----EEE
Q 012917          269 TISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVV----VRL  344 (453)
Q Consensus       269 ~~~s~ak~~W~~~~~~~~~e~~p~~~~~a~pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~i----vRm  344 (453)
                          .....|+.        +.+.    ..++..+ .....+.+++.+|+|+++|+....|.|.++|+.++..    ++.
T Consensus       184 ----~~~~~~~~--------~~~~----~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  246 (377)
T 3dwl_C          184 ----PEASVWGS--------RLPF----NTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALIT  246 (377)
T ss_dssp             ----CCSCSSCS--------CCCE----EEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCC
T ss_pred             ----cccccccc--------ccch----hhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEe
Confidence                00001110        0010    1122234 6667789999999999999999999999999999987    888


Q ss_pred             eccccc
Q 012917          345 WKGYRD  350 (453)
Q Consensus       345 WKGyRd  350 (453)
                      ++++.+
T Consensus       247 ~~~~~~  252 (377)
T 3dwl_C          247 VKLSQL  252 (377)
T ss_dssp             EECSSS
T ss_pred             ecCCCC
Confidence            888876

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=97.46  E-value=0.00076  Score=63.64  Aligned_cols=91  Identities=14%  Similarity=0.136  Sum_probs=70.8

Q ss_pred             cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEE
Q 012917          302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC  381 (453)
Q Consensus       302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~  381 (453)
                      .|......+.+|+.+|+++++|++...|.|.|+|+.++..++.++++...    +....-.+             +..  
T Consensus         8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~----v~~~~~~~-------------~~~--   68 (304)
T 2ynn_A            8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETP----VRAGKFIA-------------RKN--   68 (304)
T ss_dssp             EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC----EEEEEEEG-------------GGT--
T ss_pred             eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCc----EEEEEEeC-------------CCC--
Confidence            46677778999999999999999999999999999999999999988763    22111101             011  


Q ss_pred             EEEEcCCCCeEEEeecCCCCeEEEEEecCC
Q 012917          382 LAIHAPRKGIIEVWQMRTGPRLLTIQCAKG  411 (453)
Q Consensus       382 LvIyaprRg~lEVW~~~~G~RV~a~~v~~~  411 (453)
                      +++-+-.+|.|.||++++|..+..+..+++
T Consensus        69 ~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~   98 (304)
T 2ynn_A           69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPD   98 (304)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             EEEEECCCCEEEEEECCCCcEEEEEeCCCC
Confidence            446677899999999999999888776544

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=97.43  E-value=0.094  Score=50.21  Aligned_cols=90  Identities=13%  Similarity=0.074  Sum_probs=56.6

Q ss_pred             eeeeccCcceeeeeecceEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEecC-Cc--
Q 012917           34 NLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLK-GD--  110 (453)
Q Consensus        34 ~~~~sp~~~~la~A~~~~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~-G~--  110 (453)
                      .++.||+|.+||.+-....|-. |+...+ .......+..+-...|+++.|-|  |-..++.|-.+|.+++|+.+ +.  
T Consensus        21 ~l~~sp~g~~las~~~D~~i~i-w~~~~~-~~~~~~~~~~~h~~~v~~~~~sp--~g~~l~s~s~D~~v~iw~~~~~~~~   96 (345)
T 3fm0_A           21 FLAWNPAGTLLASCGGDRRIRI-WGTEGD-SWICKSVLSEGHQRTVRKVAWSP--CGNYLASASFDATTCIWKKNQDDFE   96 (345)
T ss_dssp             EEEECTTSSCEEEEETTSCEEE-EEEETT-EEEEEEEECSSCSSCEEEEEECT--TSSEEEEEETTSCEEEEEECCC-EE
T ss_pred             EEEECCCCCEEEEEcCCCeEEE-EEcCCC-cceeeeeeccccCCcEEEEEECC--CCCEEEEEECCCcEEEEEccCCCeE
Confidence            4788999999998876643321 332221 11112222222346688887764  66789999999999999854 43  


Q ss_pred             EeeecccCccceeEEEE
Q 012917          111 LVHRQLIHPGRILKLRV  127 (453)
Q Consensus       111 LL~sQ~lh~~pV~~ik~  127 (453)
                      .+..-.-|..+|..+.+
T Consensus        97 ~~~~~~~h~~~v~~v~~  113 (345)
T 3fm0_A           97 CVTTLEGHENEVKSVAW  113 (345)
T ss_dssp             EEEEECCCSSCEEEEEE
T ss_pred             EEEEccCCCCCceEEEE
Confidence            33444457888888875

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.37  E-value=0.0016  Score=62.87  Aligned_cols=88  Identities=18%  Similarity=0.191  Sum_probs=69.4

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (453)
                      +......+..++.+|++++++++...|.|.++|+.++..++.++|+.+.    +....-.+             +..  +
T Consensus       135 ~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~----v~~~~~~~-------------~~~--~  195 (420)
T 3vl1_A          135 DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRAT----VTDIAIID-------------RGR--N  195 (420)
T ss_dssp             TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSC----EEEEEEET-------------TTT--E
T ss_pred             cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCc----EEEEEEcC-------------CCC--E
Confidence            4556678999999999999999999999999999999999999998873    32221111             111  3


Q ss_pred             EEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917          383 AIHAPRKGIIEVWQMRTGPRLLTIQCA  409 (453)
Q Consensus       383 vIyaprRg~lEVW~~~~G~RV~a~~v~  409 (453)
                      ++.+-.+|.|.||+++++..+..+...
T Consensus       196 l~s~~~d~~v~iwd~~~~~~~~~~~~~  222 (420)
T 3vl1_A          196 VLSASLDGTIRLWECGTGTTIHTFNRK  222 (420)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECBT
T ss_pred             EEEEcCCCcEEEeECCCCceeEEeecC
Confidence            357788999999999999999988754

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.37  E-value=0.019  Score=61.98  Aligned_cols=92  Identities=12%  Similarity=0.115  Sum_probs=59.6

Q ss_pred             eeeccCcceeeeeecceEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEecC-Cc--E
Q 012917           35 LLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLK-GD--L  111 (453)
Q Consensus        35 ~~~sp~~~~la~A~~~~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~-G~--L  111 (453)
                      ++.+|+++.||.+.....|. =|+-.. ........+.. ....|+++.|.|-.+-..++.|..+|.|++|+.. |.  .
T Consensus        15 l~~s~dg~~latg~~dg~I~-vwd~~~-~~~~~~~~l~~-h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~   91 (753)
T 3jro_A           15 AVLDYYGKRLATCSSDKTIK-IFEVEG-ETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQ   91 (753)
T ss_dssp             ECCCSSSCCEEEEETTTEEE-EEEEET-TEEEEEEEECC-CSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEE
T ss_pred             EEECCCCCeEEEEECCCcEE-EEecCC-CCCccceeccC-CcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccc
Confidence            56679999988886554332 122111 11122222322 2466999988776556789999999999999954 54  5


Q ss_pred             eeecccCccceeEEEEee
Q 012917          112 VHRQLIHPGRILKLRVRG  129 (453)
Q Consensus       112 L~sQ~lh~~pV~~ik~r~  129 (453)
                      +..-.-|..+|..+.+..
T Consensus        92 ~~~~~~h~~~V~~v~~sp  109 (753)
T 3jro_A           92 IAVHAVHSASVNSVQWAP  109 (753)
T ss_dssp             EEEECCCSSCEEEEEECC
T ss_pred             cccccCCCCCeEEEEECC
Confidence            555566889999988643

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.37  E-value=0.0046  Score=56.85  Aligned_cols=87  Identities=20%  Similarity=0.261  Sum_probs=64.6

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (453)
                      +......+..++.+|+++++++.+..|.|.++|+.++..++.++++.+.    +....-.+             +..  +
T Consensus       137 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~----i~~~~~~~-------------~~~--~  197 (337)
T 1gxr_A          137 LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG----ASCIDISN-------------DGT--K  197 (337)
T ss_dssp             EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC----EEEEEECT-------------TSS--E
T ss_pred             cccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCc----eEEEEECC-------------CCC--E
Confidence            3444556788999999999999999999999999999999999987662    22211111             011  3


Q ss_pred             EEEcCCCCeEEEeecCCCCeEEEEEe
Q 012917          383 AIHAPRKGIIEVWQMRTGPRLLTIQC  408 (453)
Q Consensus       383 vIyaprRg~lEVW~~~~G~RV~a~~v  408 (453)
                      ++.+-.+|.|.+|+++++..+..+..
T Consensus       198 l~~~~~dg~i~~~d~~~~~~~~~~~~  223 (337)
T 1gxr_A          198 LWTGGLDNTVRSWDLREGRQLQQHDF  223 (337)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEecCCcEEEEECCCCceEeeecC
Confidence            34556799999999999888776653

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.35  E-value=0.094  Score=48.57  Aligned_cols=81  Identities=10%  Similarity=0.005  Sum_probs=54.7

Q ss_pred             CCCCeeeEEEECCCCC-EEEEEcCCCcEEEEEcCCc-------------------eEEEEecccccceeeEEEEEecccc
Q 012917          305 DHPRKGERLTLSPSGS-LAAITDSLGRILLLDTQAL-------------------VVVRLWKGYRDASCVFMEMLVNKDA  364 (453)
Q Consensus       305 D~~R~~~~i~lsP~~~-laa~tDslGRV~LiD~~~~-------------------~ivRmWKGyRdAqc~Wi~~~~~~~~  364 (453)
                      .....+.+++.+|+++ ++++....|.|.++|+.++                   ..++.++++.+    .|....-.+ 
T Consensus       257 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~v~~~~~s~-  331 (357)
T 3i2n_A          257 AHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ----PISSLDWSP-  331 (357)
T ss_dssp             CCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSS----CEEEEEECS-
T ss_pred             CCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCC----CeeEEEEcC-
Confidence            4456688899999998 8999999999999999864                   45666777655    222111111 


Q ss_pred             cccccccCCCCCCccEEEEEEcCCCCeEEEeecCCCCeE
Q 012917          365 ATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRL  403 (453)
Q Consensus       365 ~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV  403 (453)
                               .  ..  +|++-+..+|.|.||++.++.+|
T Consensus       332 ---------~--~~--~l~~s~~~d~~i~iw~~~~~~~i  357 (357)
T 3i2n_A          332 ---------D--KR--GLCVCSSFDQTVRVLIVTKLNKI  357 (357)
T ss_dssp             ---------S--ST--TEEEEEETTSEEEEEEECC----
T ss_pred             ---------C--CC--eEEEEecCCCcEEEEECCCcccC
Confidence                     0  11  35556888999999999988764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.35  E-value=0.05  Score=53.46  Aligned_cols=77  Identities=17%  Similarity=0.237  Sum_probs=58.8

Q ss_pred             eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCC
Q 012917          309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPR  388 (453)
Q Consensus       309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyapr  388 (453)
                      .+.++..  ++++++++...|.|.++|+.++..++.++|+...-..+-.    .+               .  +++-+-.
T Consensus       281 ~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~----~~---------------~--~l~~~~~  337 (445)
T 2ovr_B          281 RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL----KD---------------N--ILVSGNA  337 (445)
T ss_dssp             CEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE----ET---------------T--EEEEEET
T ss_pred             ceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE----eC---------------C--EEEEEeC
Confidence            3444444  7889999999999999999999999999998874333221    10               1  3345667


Q ss_pred             CCeEEEeecCCCCeEEEEEe
Q 012917          389 KGIIEVWQMRTGPRLLTIQC  408 (453)
Q Consensus       389 Rg~lEVW~~~~G~RV~a~~v  408 (453)
                      +|.|.||++++|..+..+..
T Consensus       338 dg~i~vwd~~~~~~~~~~~~  357 (445)
T 2ovr_B          338 DSTVKIWDIKTGQCLQTLQG  357 (445)
T ss_dssp             TSCEEEEETTTCCEEEEECS
T ss_pred             CCeEEEEECCCCcEEEEEcc
Confidence            99999999999999988875

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=97.33  E-value=0.15  Score=50.45  Aligned_cols=136  Identities=10%  Similarity=-0.081  Sum_probs=74.5

Q ss_pred             CCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceee----------EEEEEe-cccccccccccCCC
Q 012917          306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCV----------FMEMLV-NKDAATSSAYYAPV  374 (453)
Q Consensus       306 ~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~----------Wi~~~~-~~~~~~~~~~~~~~  374 (453)
                      ....+.+++.+ +++++++....|+|.|+|+.++..++.++........          |..... ..+..-......+ 
T Consensus       240 h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-  317 (450)
T 2vdu_B          240 HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-  317 (450)
T ss_dssp             CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS-
T ss_pred             CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC-
Confidence            34567888999 9999999999999999999999999988754211000          000000 0000000000011 


Q ss_pred             CCCccEEEEEEcCCCCeEEEeec--CCC---CeEEEEEecCCe--EEeccccccCccCC-CCC---CcCcEEEEEeCCCC
Q 012917          375 KSDYCLCLAIHAPRKGIIEVWQM--RTG---PRLLTIQCAKGS--KILQPTYRFGSSMA-SSP---YVPLEVFLLNGDSG  443 (453)
Q Consensus       375 k~~~~l~LvIyaprRg~lEVW~~--~~G---~RV~a~~v~~~~--~Ll~~~~~~~g~~~-~~~---~~~~~~~lld~~~g  443 (453)
                        + .-+|++-....|.|.||++  ..+   ..+..+..+...  .-+.++..+..... ..+   -...++|-++..+|
T Consensus       318 --~-~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~  394 (450)
T 2vdu_B          318 --N-LPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNEN  394 (450)
T ss_dssp             --S-SSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTT
T ss_pred             --C-CCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCC
Confidence              1 1155566657899999999  666   455555544221  11222222222111 111   11258899999888


Q ss_pred             ceE
Q 012917          444 QLS  446 (453)
Q Consensus       444 ~l~  446 (453)
                      .+.
T Consensus       395 ~~~  397 (450)
T 2vdu_B          395 SFV  397 (450)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            775

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=97.32  E-value=0.0042  Score=61.47  Aligned_cols=92  Identities=15%  Similarity=0.267  Sum_probs=73.2

Q ss_pred             ccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccE
Q 012917          301 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (453)
Q Consensus       301 ~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (453)
                      ..+..+...+.+++.+|++++++++...|.|.++|+.++..++.++|+++    |+......+             +.. 
T Consensus       186 ~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~----~v~~~~~~~-------------~g~-  247 (410)
T 1vyh_C          186 RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE----WVRMVRPNQ-------------DGT-  247 (410)
T ss_dssp             ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS----CEEEEEECT-------------TSS-
T ss_pred             EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCc----cEEEEEECC-------------CCC-
Confidence            34556667899999999999999999999999999999999999999988    665543321             111 


Q ss_pred             EEEEEcCCCCeEEEeecCCCCeEEEEEecCC
Q 012917          381 CLAIHAPRKGIIEVWQMRTGPRLLTIQCAKG  411 (453)
Q Consensus       381 ~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~  411 (453)
                       +++-+..+|.|.||+++++..+..+..+.+
T Consensus       248 -~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~  277 (410)
T 1vyh_C          248 -LIASCSNDQTVRVWVVATKECKAELREHRH  277 (410)
T ss_dssp             -EEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred             -EEEEEcCCCeEEEEECCCCceeeEecCCCc
Confidence             456677899999999999998887765443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=97.27  E-value=0.097  Score=48.43  Aligned_cols=44  Identities=16%  Similarity=0.175  Sum_probs=39.7

Q ss_pred             CCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEeccc-cc
Q 012917          307 PRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGY-RD  350 (453)
Q Consensus       307 ~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGy-Rd  350 (453)
                      ...+.+++.+|+++++++.+..|+|.++|+.++..++.++++ .+
T Consensus       251 ~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~  295 (342)
T 1yfq_A          251 AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED  295 (342)
T ss_dssp             CCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSS
T ss_pred             ceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCC
Confidence            346789999999999999999999999999999999999998 54

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=97.24  E-value=0.0019  Score=61.87  Aligned_cols=116  Identities=17%  Similarity=0.202  Sum_probs=80.3

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (453)
                      +......+.+++.+|+++++|++...|.|.++|+.++..++.++|+.+    ++....-.+             +..  +
T Consensus       202 ~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~----~v~~~~~sp-------------~~~--~  262 (321)
T 3ow8_A          202 LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS----WVLNVAFCP-------------DDT--H  262 (321)
T ss_dssp             ECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS----CEEEEEECT-------------TSS--E
T ss_pred             EcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC----ceEEEEECC-------------CCC--E
Confidence            444445678899999999999999999999999999999999999987    443322111             111  3


Q ss_pred             EEEcCCCCeEEEeecCCCCeEEEEEecCCeEEeccccccCccCCCCCCcCc-EEEEEeCCCCceEEEe
Q 012917          383 AIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGSSMASSPYVPL-EVFLLNGDSGQLSVLN  449 (453)
Q Consensus       383 vIyaprRg~lEVW~~~~G~RV~a~~v~~~~~Ll~~~~~~~g~~~~~~~~~~-~~~lld~~~g~l~~i~  449 (453)
                      ++-+..+|.|.||+++++..+..+.-+.+.        +.+.    .|++. +.++--.+||.++..+
T Consensus       263 l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~--------v~~v----~~s~~g~~l~s~~~d~~i~vwd  318 (321)
T 3ow8_A          263 FVSSSSDKSVKVWDVGTRTCVHTFFDHQDQ--------VWGV----KYNGNGSKIVSVGDDQEIHIYD  318 (321)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSC--------EEEE----EECTTSSEEEEEETTCCEEEEE
T ss_pred             EEEEeCCCcEEEEeCCCCEEEEEEcCCCCc--------EEEE----EECCCCCEEEEEeCCCeEEEEe
Confidence            456778999999999999988877533221        1111    13332 2344445678887765

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.23  E-value=0.17  Score=49.07  Aligned_cols=50  Identities=24%  Similarity=0.377  Sum_probs=42.1

Q ss_pred             CCcEEEEEEEEeCCcEEEEEeccccEEEEEe-cCCcEeeecccCccceeEEEE
Q 012917           76 SEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGDLVHRQLIHPGRILKLRV  127 (453)
Q Consensus        76 ~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt-e~G~LL~sQ~lh~~pV~~ik~  127 (453)
                      .+.|+++.|-|  |-..+++|..+|.|++|+ ++|..+..-.-|..+|..+..
T Consensus       134 ~~~v~~v~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  184 (401)
T 4aez_A          134 STYVASVKWSH--DGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW  184 (401)
T ss_dssp             TCCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             CCCEEEEEECC--CCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE
Confidence            56799998876  667899999999999999 668877777788899988876

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=97.22  E-value=0.0019  Score=61.87  Aligned_cols=86  Identities=19%  Similarity=0.186  Sum_probs=66.5

Q ss_pred             cCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccc--eeeEEEEEecccccccccccCCCCCCccEE
Q 012917          304 KDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA--SCVFMEMLVNKDAATSSAYYAPVKSDYCLC  381 (453)
Q Consensus       304 ~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdA--qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~  381 (453)
                      ......+.+++.+|+|+++|+....|.|.++|+.++..++.++|+...  .+.|-      +             +..  
T Consensus       161 ~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s------p-------------d~~--  219 (321)
T 3ow8_A          161 DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFS------P-------------DSQ--  219 (321)
T ss_dssp             ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEEC------T-------------TSC--
T ss_pred             cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEc------C-------------CCC--
Confidence            334456788999999999999999999999999999999999998763  11221      0             111  


Q ss_pred             EEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917          382 LAIHAPRKGIIEVWQMRTGPRLLTIQCAK  410 (453)
Q Consensus       382 LvIyaprRg~lEVW~~~~G~RV~a~~v~~  410 (453)
                      +++.+..+|.|.||+++++..+..+.-+.
T Consensus       220 ~l~s~s~dg~i~iwd~~~~~~~~~~~~h~  248 (321)
T 3ow8_A          220 LLVTASDDGYIKIYDVQHANLAGTLSGHA  248 (321)
T ss_dssp             EEEEECTTSCEEEEETTTCCEEEEECCCS
T ss_pred             EEEEEcCCCeEEEEECCCcceeEEEcCCC
Confidence            45678889999999999998877765443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=97.16  E-value=0.003  Score=60.01  Aligned_cols=86  Identities=12%  Similarity=0.130  Sum_probs=63.7

Q ss_pred             CCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEE
Q 012917          306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH  385 (453)
Q Consensus       306 ~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIy  385 (453)
                      ....+..++.+|+++++|++...|.|.++| .++..++.++++.+.    +....-.+             +..  +++.
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~----v~~~~~~~-------------~~~--~l~~  166 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAP----IVSVKWNK-------------DGT--HIIS  166 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSC----EEEEEECT-------------TSS--EEEE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCcc----EEEEEECC-------------CCC--EEEE
Confidence            445789999999999999999999999999 788888999887762    22211111             111  3346


Q ss_pred             cCCCCeEEEeecCCCCeEEEEEecCC
Q 012917          386 APRKGIIEVWQMRTGPRLLTIQCAKG  411 (453)
Q Consensus       386 aprRg~lEVW~~~~G~RV~a~~v~~~  411 (453)
                      +-.+|.|.+|+++++..+..+.....
T Consensus       167 ~~~d~~i~iwd~~~~~~~~~~~~~~~  192 (425)
T 1r5m_A          167 MDVENVTILWNVISGTVMQHFELKET  192 (425)
T ss_dssp             EETTCCEEEEETTTTEEEEEECCC--
T ss_pred             EecCCeEEEEECCCCcEEEEeecccc
Confidence            67799999999999999988876554

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.15  E-value=0.0018  Score=63.21  Aligned_cols=90  Identities=12%  Similarity=0.236  Sum_probs=67.8

Q ss_pred             CCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEec-ccccceeeEEEEEecccccccccccCCCCCCccEEEEE
Q 012917          306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWK-GYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI  384 (453)
Q Consensus       306 ~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWK-GyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI  384 (453)
                      ....+.+++.+|++++++++...|.|.++|+.++..++.|+ +... .+.-+.....-.            .+.  .+++
T Consensus       213 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~s------------~~~--~~l~  277 (437)
T 3gre_A          213 RHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHA-PITHVEVCQFYG------------KNS--VIVV  277 (437)
T ss_dssp             GGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCE-EEEEEEECTTTC------------TTE--EEEE
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCC-ceEEEEeccccC------------CCc--cEEE
Confidence            34578899999999999999999999999999999999997 5554 222222211100            011  3556


Q ss_pred             EcCCCCeEEEeecCCCCeEEEEEecC
Q 012917          385 HAPRKGIIEVWQMRTGPRLLTIQCAK  410 (453)
Q Consensus       385 yaprRg~lEVW~~~~G~RV~a~~v~~  410 (453)
                      -+-.+|.|.||++++|..+..+..+.
T Consensus       278 s~~~dg~i~iwd~~~~~~~~~~~~~~  303 (437)
T 3gre_A          278 GGSSKTFLTIWNFVKGHCQYAFINSD  303 (437)
T ss_dssp             EESTTEEEEEEETTTTEEEEEEESSS
T ss_pred             EEcCCCcEEEEEcCCCcEEEEEEcCC
Confidence            78889999999999999999988554

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=97.13  E-value=0.0045  Score=60.61  Aligned_cols=86  Identities=17%  Similarity=0.207  Sum_probs=65.9

Q ss_pred             CCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEE
Q 012917          306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH  385 (453)
Q Consensus       306 ~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIy  385 (453)
                      ....+.+++.+|+|+++|++...|.|.|+|+.++..++.++|+.+.    |....-.+             +..  +++.
T Consensus       122 ~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~----v~~~~~~p-------------~~~--~l~s  182 (393)
T 1erj_A          122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQD----IYSLDYFP-------------SGD--KLVS  182 (393)
T ss_dssp             CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC----EEEEEECT-------------TSS--EEEE
T ss_pred             CceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCC----EEEEEEcC-------------CCC--EEEE
Confidence            3445789999999999999999999999999999999999999873    32211111             011  3467


Q ss_pred             cCCCCeEEEeecCCCCeEEEEEecC
Q 012917          386 APRKGIIEVWQMRTGPRLLTIQCAK  410 (453)
Q Consensus       386 aprRg~lEVW~~~~G~RV~a~~v~~  410 (453)
                      +-.+|.|.||++++|..+..+....
T Consensus       183 ~s~d~~v~iwd~~~~~~~~~~~~~~  207 (393)
T 1erj_A          183 GSGDRTVRIWDLRTGQCSLTLSIED  207 (393)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECSS
T ss_pred             ecCCCcEEEEECCCCeeEEEEEcCC
Confidence            7889999999999998877766443

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=97.05  E-value=0.0031  Score=61.70  Aligned_cols=79  Identities=10%  Similarity=0.117  Sum_probs=61.5

Q ss_pred             cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEE-ecccccceeeEEEEEecccccccccccCCCCCCccE
Q 012917          302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRL-WKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (453)
Q Consensus       302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRm-WKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (453)
                      .+......+.+++.||+|+++|+....|.|.|+|+.++..++. .+|+.+    +|....=.+             +.. 
T Consensus       264 ~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~----~V~~v~fSp-------------dg~-  325 (365)
T 4h5i_A          264 QVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSF----AITEVTISP-------------DST-  325 (365)
T ss_dssp             EEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSS----CEEEEEECT-------------TSC-
T ss_pred             eecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccC----CEEEEEECC-------------CCC-
Confidence            3566667789999999999999999999999999999999985 589988    443322111             111 


Q ss_pred             EEEEEcCCCCeEEEeecCC
Q 012917          381 CLAIHAPRKGIIEVWQMRT  399 (453)
Q Consensus       381 ~LvIyaprRg~lEVW~~~~  399 (453)
                       +++-+..+|.|.||+++.
T Consensus       326 -~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          326 -YVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             -EEEEEETTSEEEEEECCT
T ss_pred             -EEEEEeCCCeEEEEEcCC
Confidence             456788999999999964

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=97.00  E-value=0.0071  Score=59.93  Aligned_cols=100  Identities=12%  Similarity=0.017  Sum_probs=60.8

Q ss_pred             cCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecc---cccccccccCCCCCCccE
Q 012917          304 KDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNK---DAATSSAYYAPVKSDYCL  380 (453)
Q Consensus       304 ~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~---~~~~~~~~~~~~k~~~~l  380 (453)
                      ..+...+.+++.+|+|++++++...|.|.|+|+.++..+....++-.....++......   +.........+   +.. 
T Consensus       293 ~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~-  368 (435)
T 4e54_B          293 LPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYP---DPN-  368 (435)
T ss_dssp             CBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCC---CTT-
T ss_pred             eeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcC---CCC-
Confidence            34456688899999999999999999999999999988888777655333222111000   00000000000   000 


Q ss_pred             EEEEEcCCCCeEEEeecCCCCeEEEEE
Q 012917          381 CLAIHAPRKGIIEVWQMRTGPRLLTIQ  407 (453)
Q Consensus       381 ~LvIyaprRg~lEVW~~~~G~RV~a~~  407 (453)
                      +++......+.|+||+..+|+.+..+.
T Consensus       369 ~~~~~~~~~~~i~iwd~~~g~~~~~l~  395 (435)
T 4e54_B          369 FKSCTPYELRTIDVFDGNSGKMMCQLY  395 (435)
T ss_dssp             SCCSSTTCCCCEEEECSSSCCEEEEEC
T ss_pred             eEEEEecCCCEEEEEECCCCcEEEEEe
Confidence            111222234679999999999887764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=96.99  E-value=0.0041  Score=60.42  Aligned_cols=80  Identities=13%  Similarity=0.124  Sum_probs=59.6

Q ss_pred             CCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEe-cccccceeeEEEEEecccccccccccCCCCCCccEEEE
Q 012917          305 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLW-KGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLA  383 (453)
Q Consensus       305 D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmW-KGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~Lv  383 (453)
                      .....+.+++.+|++++++++...|.|.++|+.++..++.+ +++.+..+.-+....                +..  ++
T Consensus       174 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~--~l  235 (402)
T 2aq5_A          174 VHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS----------------EGK--IL  235 (402)
T ss_dssp             TCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECS----------------TTE--EE
T ss_pred             CCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcC----------------CCc--EE
Confidence            34567889999999999999999999999999999999998 788765332222211                111  22


Q ss_pred             EEc---CCCCeEEEeecCCCCe
Q 012917          384 IHA---PRKGIIEVWQMRTGPR  402 (453)
Q Consensus       384 Iya---prRg~lEVW~~~~G~R  402 (453)
                      +.+   ...|.|.||+++++..
T Consensus       236 ~~g~~~~~d~~i~iwd~~~~~~  257 (402)
T 2aq5_A          236 TTGFSRMSERQVALWDTKHLEE  257 (402)
T ss_dssp             EEEECTTCCEEEEEEETTBCSS
T ss_pred             EEeccCCCCceEEEEcCccccC
Confidence            333   6789999999998765

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=96.98  E-value=0.0048  Score=58.65  Aligned_cols=88  Identities=19%  Similarity=0.265  Sum_probs=67.6

Q ss_pred             CccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCcc
Q 012917          300 LTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYC  379 (453)
Q Consensus       300 l~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~  379 (453)
                      +..|..+...+..++.+|+|++++++...|.|-|+|+.++..++.++|+.+.    +....-.+             +. 
T Consensus        58 ~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~----v~~~~~~~-------------~~-  119 (319)
T 3frx_A           58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD----VMSVDIDK-------------KA-  119 (319)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC----EEEEEECT-------------TS-
T ss_pred             ceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCc----EEEEEEcC-------------CC-
Confidence            3457777888999999999999999999999999999999999999999873    22211111             11 


Q ss_pred             EEEEEEcCCCCeEEEeecCCCCeEEEEE
Q 012917          380 LCLAIHAPRKGIIEVWQMRTGPRLLTIQ  407 (453)
Q Consensus       380 l~LvIyaprRg~lEVW~~~~G~RV~a~~  407 (453)
                       -+++-+..+|.|.||+++ +.++..+.
T Consensus       120 -~~l~s~s~D~~i~vwd~~-~~~~~~~~  145 (319)
T 3frx_A          120 -SMIISGSRDKTIKVWTIK-GQCLATLL  145 (319)
T ss_dssp             -CEEEEEETTSCEEEEETT-SCEEEEEC
T ss_pred             -CEEEEEeCCCeEEEEECC-CCeEEEEe
Confidence             155778899999999996 55555443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=96.95  E-value=0.0027  Score=60.64  Aligned_cols=84  Identities=11%  Similarity=0.009  Sum_probs=62.3

Q ss_pred             CCeeeEEEECC--CCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEE
Q 012917          307 PRKGERLTLSP--SGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI  384 (453)
Q Consensus       307 ~R~~~~i~lsP--~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI  384 (453)
                      ...+..++.+|  ++++++++...|.|.|+|+.++..+++.++..+..+.-+....                +.  -+++
T Consensus       125 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p----------------dg--~~la  186 (343)
T 3lrv_A          125 ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK----------------DS--LLLA  186 (343)
T ss_dssp             SSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT----------------TS--CEEE
T ss_pred             CCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC----------------CC--CEEE
Confidence            35688999999  9999999999999999999999998888666554432222211                11  1445


Q ss_pred             EcCCCCeEEEeecCCCCeE-EEEEe
Q 012917          385 HAPRKGIIEVWQMRTGPRL-LTIQC  408 (453)
Q Consensus       385 yaprRg~lEVW~~~~G~RV-~a~~v  408 (453)
                      -+-.+|.|.||+++++..+ ..+..
T Consensus       187 sg~~dg~i~iwd~~~~~~~~~~~~~  211 (343)
T 3lrv_A          187 LYSPDGILDVYNLSSPDQASSRFPV  211 (343)
T ss_dssp             EECTTSCEEEEESSCTTSCCEECCC
T ss_pred             EEcCCCEEEEEECCCCCCCccEEec
Confidence            5678999999999998877 66655

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=96.94  E-value=0.0076  Score=54.93  Aligned_cols=82  Identities=10%  Similarity=0.070  Sum_probs=61.0

Q ss_pred             cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCc----eEEEEecccccceeeEEEEEecccccccccccCCCCCC
Q 012917          302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQAL----VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSD  377 (453)
Q Consensus       302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~----~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~  377 (453)
                      .+..++..+.+|+.+|+++++|++...|.|.++|+.++    ..++.++|+.+.    |....-.+          . .+
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~----v~~~~~~~----------~-~d   70 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSS----IVAIDWAS----------P-EY   70 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSC----EEEEEECC----------G-GG
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCc----EEEEEEcC----------C-CC
Confidence            36677788999999999999999999999999999987    688888888773    22211110          0 00


Q ss_pred             ccEEEEEEcCCCCeEEEeecCCC
Q 012917          378 YCLCLAIHAPRKGIIEVWQMRTG  400 (453)
Q Consensus       378 ~~l~LvIyaprRg~lEVW~~~~G  400 (453)
                      ..  +++-+-.+|.|.||+++++
T Consensus        71 ~~--~l~s~~~dg~v~vwd~~~~   91 (351)
T 3f3f_A           71 GR--IIASASYDKTVKLWEEDPD   91 (351)
T ss_dssp             CS--EEEEEETTSCEEEEEECTT
T ss_pred             CC--EEEEEcCCCeEEEEecCCC
Confidence            11  3456677999999999887

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=96.94  E-value=0.012  Score=57.33  Aligned_cols=89  Identities=16%  Similarity=0.140  Sum_probs=65.8

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (453)
                      +......+..++.+|++++++++...|.|.++|+.++..++.++++.++    +....-.+          .  ...  |
T Consensus       213 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~----v~~~~~~p----------~--~~~--l  274 (401)
T 4aez_A          213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAA----VKAVAWCP----------W--QSN--L  274 (401)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSC----CCEEEECT----------T--STT--E
T ss_pred             EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcce----EEEEEECC----------C--CCC--E
Confidence            4455677889999999999999999999999999999999998887663    22111111          0  011  3


Q ss_pred             EEEc--CCCCeEEEeecCCCCeEEEEEec
Q 012917          383 AIHA--PRKGIIEVWQMRTGPRLLTIQCA  409 (453)
Q Consensus       383 vIya--prRg~lEVW~~~~G~RV~a~~v~  409 (453)
                      ++-+  -.+|.|.+|++++|..+..+..+
T Consensus       275 l~~~~gs~d~~i~i~d~~~~~~~~~~~~~  303 (401)
T 4aez_A          275 LATGGGTMDKQIHFWNAATGARVNTVDAG  303 (401)
T ss_dssp             EEEECCTTTCEEEEEETTTCCEEEEEECS
T ss_pred             EEEecCCCCCEEEEEECCCCCEEEEEeCC
Confidence            3333  37999999999999988877644

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=96.92  E-value=0.23  Score=45.17  Aligned_cols=85  Identities=22%  Similarity=0.346  Sum_probs=57.4

Q ss_pred             eeeccCcceeeeeecceEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEe-cCCcEee
Q 012917           35 LLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGDLVH  113 (453)
Q Consensus        35 ~~~sp~~~~la~A~~~~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt-e~G~LL~  113 (453)
                      ++=|+++ +||+|....+-+  |+-... .+.-.-.+.. .++.|+++.+-|  +-..++.|..+|.|++|+ ++|.++.
T Consensus        31 l~WS~~~-~lAvg~D~tV~i--Wd~~tg-~~~~~~~~~~-~~~~V~~v~~~~--~~~~l~sgs~Dg~v~iw~~~~~~~~~  103 (318)
T 4ggc_A           31 VDWSSGN-VLAVALDNSVYL--WSASSG-DILQLLQMEQ-PGEYISSVAWIK--EGNYLAVGTSSAEVQLWDVQQQKRLR  103 (318)
T ss_dssp             EEECTTS-EEEEEETTEEEE--EETTTC-CEEEEEECCS-TTCCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             EEECCCC-EEEEEeCCEEEE--EECCCC-CEEEEEEecC-CCCeEEEEEECC--CCCEEEEEECCCcEEEeecCCceeEE
Confidence            5567776 889998876544  654432 2211112222 356799887765  556889999999999999 6688877


Q ss_pred             ecccCccceeEEE
Q 012917          114 RQLIHPGRILKLR  126 (453)
Q Consensus       114 sQ~lh~~pV~~ik  126 (453)
                      ...-|..++..+.
T Consensus       104 ~~~~h~~~~~~~~  116 (318)
T 4ggc_A          104 NMTSHSARVGSLS  116 (318)
T ss_dssp             EEECCSSCEEEEE
T ss_pred             EecCccceEEEee
Confidence            7777777766554

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=96.89  E-value=0.18  Score=54.25  Aligned_cols=68  Identities=6%  Similarity=-0.024  Sum_probs=47.9

Q ss_pred             CCCEEEEEcCCCcEEEEEcCCc----eEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEE
Q 012917          318 SGSLAAITDSLGRILLLDTQAL----VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIE  393 (453)
Q Consensus       318 ~~~laa~tDslGRV~LiD~~~~----~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lE  393 (453)
                      ++++++++...|.|.++|+.++    ..++..+|+.+.    +....-.+          .....  -+++.+..+|.|.
T Consensus       169 d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~----V~~l~~sp----------~~~~~--~~l~s~s~Dg~I~  232 (753)
T 3jro_A          169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW----VRDVAWSP----------TVLLR--SYLASVSQDRTCI  232 (753)
T ss_dssp             GGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC----EEEEEECC----------CCSSS--EEEEEEESSSCEE
T ss_pred             CCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc----EEEEEecc----------CCCCC--CEEEEEecCCEEE
Confidence            6899999999999999999887    777888887762    22211111          00001  2556778899999


Q ss_pred             EeecCCCC
Q 012917          394 VWQMRTGP  401 (453)
Q Consensus       394 VW~~~~G~  401 (453)
                      ||+++++.
T Consensus       233 iwd~~~~~  240 (753)
T 3jro_A          233 IWTQDNEQ  240 (753)
T ss_dssp             EEEESSSS
T ss_pred             EecCCCCC
Confidence            99999874

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=96.87  E-value=0.0053  Score=59.66  Aligned_cols=89  Identities=17%  Similarity=0.140  Sum_probs=67.3

Q ss_pred             CCccccCCCCeeeEEEECCCC-CEEEEEcCCCcEEEEEcCCceEEEEe--cccccceeeEEEEEecccccccccccCCCC
Q 012917          299 PLTCLKDHPRKGERLTLSPSG-SLAAITDSLGRILLLDTQALVVVRLW--KGYRDASCVFMEMLVNKDAATSSAYYAPVK  375 (453)
Q Consensus       299 pl~~l~D~~R~~~~i~lsP~~-~laa~tDslGRV~LiD~~~~~ivRmW--KGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k  375 (453)
                      ++..+..+...+..|+.+|++ +++++++..|.|.++|+.++..++.+  +++.+    .+....-.+            
T Consensus       123 ~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~v~~~~~~~------------  186 (402)
T 2aq5_A          123 PVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD----TIYSVDWSR------------  186 (402)
T ss_dssp             CSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCS----CEEEEEECT------------
T ss_pred             ceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCC----ceEEEEECC------------
Confidence            344577778889999999998 69999999999999999999999999  77766    222211111            


Q ss_pred             CCccEEEEEEcCCCCeEEEeecCCCCeEEEE
Q 012917          376 SDYCLCLAIHAPRKGIIEVWQMRTGPRLLTI  406 (453)
Q Consensus       376 ~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~  406 (453)
                       +..  +++.+-.+|.|.||+++++..+..+
T Consensus       187 -~~~--~l~~~~~d~~i~iwd~~~~~~~~~~  214 (402)
T 2aq5_A          187 -DGA--LICTSCRDKRVRVIEPRKGTVVAEK  214 (402)
T ss_dssp             -TSS--CEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             -CCC--EEEEEecCCcEEEEeCCCCceeeee
Confidence             011  2345668999999999999888877

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=96.83  E-value=0.014  Score=56.48  Aligned_cols=89  Identities=16%  Similarity=0.177  Sum_probs=63.7

Q ss_pred             ccCCCCeeeEEEECCCC-CEEEEEcCCCcEEEEEcCCceE----EEEecccccc-----------eeeEEEEEecccccc
Q 012917          303 LKDHPRKGERLTLSPSG-SLAAITDSLGRILLLDTQALVV----VRLWKGYRDA-----------SCVFMEMLVNKDAAT  366 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~-~laa~tDslGRV~LiD~~~~~i----vRmWKGyRdA-----------qc~Wi~~~~~~~~~~  366 (453)
                      +......+.+++.+|++ +++|+....|.|.++|+.++..    ++.+++..+-           .+.-+....      
T Consensus       222 ~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------  295 (447)
T 3dw8_B          222 MEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH------  295 (447)
T ss_dssp             GGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECT------
T ss_pred             ccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECC------
Confidence            44455678999999998 9999999999999999999998    8999998762           232222211      


Q ss_pred             cccccCCCCCCccEEEEEEcCCCCeEEEeecCC-CCeEEEEEecC
Q 012917          367 SSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRT-GPRLLTIQCAK  410 (453)
Q Consensus       367 ~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~-G~RV~a~~v~~  410 (453)
                                +.. +|+. +-. |.|.||++++ +..+..+..+.
T Consensus       296 ----------~g~-~l~~-~~~-~~v~iwd~~~~~~~~~~~~~~~  327 (447)
T 3dw8_B          296 ----------SGR-YMMT-RDY-LSVKVWDLNMENRPVETYQVHE  327 (447)
T ss_dssp             ----------TSS-EEEE-EES-SEEEEEETTCCSSCSCCEESCG
T ss_pred             ----------CCC-EEEE-eeC-CeEEEEeCCCCccccceeeccc
Confidence                      111 4444 344 9999999998 88887777553

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=96.77  E-value=0.0076  Score=54.93  Aligned_cols=85  Identities=16%  Similarity=0.192  Sum_probs=64.7

Q ss_pred             CCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEE
Q 012917          306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH  385 (453)
Q Consensus       306 ~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIy  385 (453)
                      ....+..++.+|+++ +++....|.|.++|+.++..++.++++.+    .+....-.+             +. .  ++.
T Consensus       183 ~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~i~~~~~~~-------------~~-~--l~~  241 (313)
T 3odt_A          183 HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHES----FVYCIKLLP-------------NG-D--IVS  241 (313)
T ss_dssp             CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSS----CEEEEEECT-------------TS-C--EEE
T ss_pred             CcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCc----eEEEEEEec-------------CC-C--EEE
Confidence            456688999999999 66778889999999999999999998876    333221111             11 1  345


Q ss_pred             cCCCCeEEEeecCCCCeEEEEEecCC
Q 012917          386 APRKGIIEVWQMRTGPRLLTIQCAKG  411 (453)
Q Consensus       386 aprRg~lEVW~~~~G~RV~a~~v~~~  411 (453)
                      +-.+|.|.||+++++..+..+..+.+
T Consensus       242 ~~~dg~v~iwd~~~~~~~~~~~~~~~  267 (313)
T 3odt_A          242 CGEDRTVRIWSKENGSLKQVITLPAI  267 (313)
T ss_dssp             EETTSEEEEECTTTCCEEEEEECSSS
T ss_pred             EecCCEEEEEECCCCceeEEEeccCc
Confidence            67899999999999999988876543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=96.75  E-value=0.016  Score=53.71  Aligned_cols=89  Identities=10%  Similarity=0.169  Sum_probs=66.1

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccc--eeeEEEEEecccccccccccCCCCCCccE
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA--SCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdA--qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (453)
                      +......+.+++.+|+++++++++..|.|.++|+.++..+++. ++.+.  .+.|..   ..              +.  
T Consensus        82 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~---~~--------------~~--  141 (368)
T 3mmy_A           82 QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIA-QHDAPVKTIHWIK---AP--------------NY--  141 (368)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEEEE---CS--------------SC--
T ss_pred             eccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeec-cccCceEEEEEEe---CC--------------CC--
Confidence            4445567889999999999999999999999999999988854 44432  122221   11              11  


Q ss_pred             EEEEEcCCCCeEEEeecCCCCeEEEEEecCC
Q 012917          381 CLAIHAPRKGIIEVWQMRTGPRLLTIQCAKG  411 (453)
Q Consensus       381 ~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~  411 (453)
                      -+++.+-.+|.|.||+++++..+..+..+..
T Consensus       142 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  172 (368)
T 3mmy_A          142 SCVMTGSWDKTLKFWDTRSSNPMMVLQLPER  172 (368)
T ss_dssp             EEEEEEETTSEEEEECSSCSSCSEEEECSSC
T ss_pred             CEEEEccCCCcEEEEECCCCcEEEEEecCCC
Confidence            2456778899999999999998888876654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=96.74  E-value=0.0047  Score=60.07  Aligned_cols=85  Identities=13%  Similarity=0.168  Sum_probs=63.4

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (453)
                      +......+.+++.+|+|+++++....|.|.++|+.++..++.++|+.+.    +....-...           .+ .  +
T Consensus       135 ~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~----v~~v~~s~~-----------~~-~--~  196 (357)
T 4g56_B          135 KYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSE----VNCVAACPG-----------KD-T--I  196 (357)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC----EEEEEECTT-----------CS-S--C
T ss_pred             cCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCC----EEEEEEccC-----------CC-c--e
Confidence            3455667899999999999999999999999999999999999998873    322211110           01 1  3


Q ss_pred             EEEcCCCCeEEEeecCCCCeEEE
Q 012917          383 AIHAPRKGIIEVWQMRTGPRLLT  405 (453)
Q Consensus       383 vIyaprRg~lEVW~~~~G~RV~a  405 (453)
                      ++.+..+|.|.||+++++..+..
T Consensus       197 ~~s~~~dg~v~~wd~~~~~~~~~  219 (357)
T 4g56_B          197 FLSCGEDGRILLWDTRKPKPATR  219 (357)
T ss_dssp             EEEEETTSCEEECCTTSSSCBCB
T ss_pred             eeeeccCCceEEEECCCCceeee
Confidence            35667789999999988765443

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=96.72  E-value=0.0067  Score=57.81  Aligned_cols=82  Identities=23%  Similarity=0.271  Sum_probs=63.1

Q ss_pred             CCeeeEEEECCCCCEEEEEcCC---CcEEEEEcCCceEEEEecc-------------cccceeeEEEEEecccccccccc
Q 012917          307 PRKGERLTLSPSGSLAAITDSL---GRILLLDTQALVVVRLWKG-------------YRDASCVFMEMLVNKDAATSSAY  370 (453)
Q Consensus       307 ~R~~~~i~lsP~~~laa~tDsl---GRV~LiD~~~~~ivRmWKG-------------yRdAqc~Wi~~~~~~~~~~~~~~  370 (453)
                      ...+.+++.+|++++++++...   |.|.++|+.++..++.+++             +.+    ++....-.+       
T Consensus       233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~-------  301 (397)
T 1sq9_A          233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS----WVMSLSFND-------  301 (397)
T ss_dssp             CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS----CEEEEEECS-------
T ss_pred             CCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCC----cEEEEEECC-------
Confidence            5668899999999999998777   9999999999999999998             554    222211111       


Q ss_pred             cCCCCCCccEEEEEEcCCCCeEEEeecCCCCeEEEEE
Q 012917          371 YAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQ  407 (453)
Q Consensus       371 ~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~  407 (453)
                            +..  +++-+..+|.|.||+++++..+..+.
T Consensus       302 ------~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          302 ------SGE--TLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             ------SSS--EEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             ------CCC--EEEEEeCCCeEEEEEcCCCceeEEEe
Confidence                  111  33456689999999999999999888

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=96.69  E-value=0.014  Score=57.47  Aligned_cols=76  Identities=16%  Similarity=0.126  Sum_probs=57.7

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (453)
                      +......+.+|+.+|+|+++|+....|.|.|+|+.++..++.++|+...-..+-.   + .                 .+
T Consensus       143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~---~-~-----------------~~  201 (420)
T 4gga_A          143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---N-S-----------------YI  201 (420)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE---E-T-----------------TE
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee---C-C-----------------CE
Confidence            4455667899999999999999999999999999999999999999874433211   1 0                 13


Q ss_pred             EEEcCCCCeEEEeecCC
Q 012917          383 AIHAPRKGIIEVWQMRT  399 (453)
Q Consensus       383 vIyaprRg~lEVW~~~~  399 (453)
                      ++-+.+++.+.+|+.+.
T Consensus       202 l~sgs~d~~i~~~d~~~  218 (420)
T 4gga_A          202 LSSGSRSGHIHHHDVRV  218 (420)
T ss_dssp             EEEEETTSEEEEEETTS
T ss_pred             EEEEeCCCceeEeeecc
Confidence            34556677777777665

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=96.69  E-value=0.0072  Score=60.89  Aligned_cols=127  Identities=15%  Similarity=0.142  Sum_probs=78.0

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (453)
                      +......+.+++.+|+|+++|+.+..|+|.++|+.++..++..+|.-...+.-+........   ..+.  .+ +.  -+
T Consensus       484 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~---~~~~--~~-~~--~~  555 (615)
T 1pgu_A          484 KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG---ANEE--EI-EE--DL  555 (615)
T ss_dssp             SSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC-----------CC-SC--CE
T ss_pred             cCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcccc---cccc--cc-CC--CE
Confidence            45566778999999999999999999999999999999999998833333333332110000   0000  00 11  14


Q ss_pred             EEEcCCCCeEEEeecCCC-CeEEEEEecCCeEEeccccccCccCCCCCCcC-cEEEEEeCCCCceEEEec
Q 012917          383 AIHAPRKGIIEVWQMRTG-PRLLTIQCAKGSKILQPTYRFGSSMASSPYVP-LEVFLLNGDSGQLSVLNR  450 (453)
Q Consensus       383 vIyaprRg~lEVW~~~~G-~RV~a~~v~~~~~Ll~~~~~~~g~~~~~~~~~-~~~~lld~~~g~l~~i~~  450 (453)
                      ++-+-.+|.|.||+++++ ..+..+..+.+            ...+-.|.| .+ ++--..||.|+..+-
T Consensus       556 l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~------------~v~~l~~s~~~~-l~s~~~d~~v~iw~~  612 (615)
T 1pgu_A          556 VATGSLDTNIFIYSVKRPMKIIKALNAHKD------------GVNNLLWETPST-LVSSGADACIKRWNV  612 (615)
T ss_dssp             EEEEETTSCEEEEESSCTTCCEEETTSSTT------------CEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred             EEEEcCCCcEEEEECCCCceechhhhcCcc------------ceEEEEEcCCCC-eEEecCCceEEEEee
Confidence            456778999999999998 45544321111            001111443 33 555556788877653

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=96.68  E-value=0.0065  Score=56.85  Aligned_cols=84  Identities=13%  Similarity=0.102  Sum_probs=62.7

Q ss_pred             ccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcC--CceEEEEecccccceeeEEEEEecccccccccccCCCCCCc
Q 012917          301 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQ--ALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDY  378 (453)
Q Consensus       301 ~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~--~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~  378 (453)
                      ..+..+...+.+++.+|+++++|++...|.|.++|+.  ++..++.++|+.+.    +....-..          .+ +.
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~----v~~~~~~~----------~~-~~   69 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGP----VWRVDWAH----------PK-FG   69 (379)
T ss_dssp             CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC----EEEEEECC----------GG-GC
T ss_pred             EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCc----EEEEEeCC----------CC-CC
Confidence            3466777889999999999999999999999999998  88899999998763    22211100          00 01


Q ss_pred             cEEEEEEcCCCCeEEEeecCCCC
Q 012917          379 CLCLAIHAPRKGIIEVWQMRTGP  401 (453)
Q Consensus       379 ~l~LvIyaprRg~lEVW~~~~G~  401 (453)
                      .  +++-+-.+|.|.||+++++.
T Consensus        70 ~--~l~s~~~dg~v~iwd~~~~~   90 (379)
T 3jrp_A           70 T--ILASCSYDGKVLIWKEENGR   90 (379)
T ss_dssp             S--EEEEEETTSCEEEEEEETTE
T ss_pred             C--EEEEeccCCEEEEEEcCCCc
Confidence            1  34566778999999999886

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.65  E-value=0.014  Score=61.67  Aligned_cols=90  Identities=13%  Similarity=0.133  Sum_probs=68.5

Q ss_pred             cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEE
Q 012917          302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC  381 (453)
Q Consensus       302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~  381 (453)
                      .|......+..|+.+|+|+++|++...|.|.|+|+.++..++.++|+...    +....=.+             +..  
T Consensus         8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~----v~~~~~s~-------------~~~--   68 (814)
T 3mkq_A            8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETP----VRAGKFIA-------------RKN--   68 (814)
T ss_dssp             EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC----EEEEEEEG-------------GGT--
T ss_pred             eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCc----EEEEEEeC-------------CCC--
Confidence            46666777999999999999999999999999999999999999988763    22111111             011  


Q ss_pred             EEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917          382 LAIHAPRKGIIEVWQMRTGPRLLTIQCAK  410 (453)
Q Consensus       382 LvIyaprRg~lEVW~~~~G~RV~a~~v~~  410 (453)
                      +++.+..+|.|.||++++|..+..+..+.
T Consensus        69 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~   97 (814)
T 3mkq_A           69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHP   97 (814)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEecCC
Confidence            23445669999999999999888877543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=96.64  E-value=0.063  Score=51.12  Aligned_cols=84  Identities=15%  Similarity=0.185  Sum_probs=61.4

Q ss_pred             eeeEEEECCCCCEEEEEc-CCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917          309 KGERLTLSPSGSLAAITD-SLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP  387 (453)
Q Consensus       309 ~~~~i~lsP~~~laa~tD-slGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap  387 (453)
                      ....++.+|+|++++++. ..|+|.++|+.++..++..++.....  -+..  ..+             ..  +|++-..
T Consensus        75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~--~~~~--s~d-------------g~--~l~~~~~  135 (391)
T 1l0q_A           75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPL--GLAL--SPD-------------GK--KLYVTNN  135 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEE--EEEE--CTT-------------SS--EEEEEET
T ss_pred             CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcc--eEEE--CCC-------------CC--EEEEEeC
Confidence            678999999998776655 45999999999999999888755421  1111  111             11  3545567


Q ss_pred             CCCeEEEeecCCCCeEEEEEecCC
Q 012917          388 RKGIIEVWQMRTGPRLLTIQCAKG  411 (453)
Q Consensus       388 rRg~lEVW~~~~G~RV~a~~v~~~  411 (453)
                      ..|.|.+|++++|..+..+..+.+
T Consensus       136 ~~~~v~~~d~~~~~~~~~~~~~~~  159 (391)
T 1l0q_A          136 GDKTVSVINTVTKAVINTVSVGRS  159 (391)
T ss_dssp             TTTEEEEEETTTTEEEEEEECCSS
T ss_pred             CCCEEEEEECCCCcEEEEEecCCC
Confidence            789999999999998888776544

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=96.55  E-value=0.066  Score=50.98  Aligned_cols=83  Identities=13%  Similarity=0.073  Sum_probs=59.1

Q ss_pred             eeeEEEECCCCCEEE-EEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917          309 KGERLTLSPSGSLAA-ITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP  387 (453)
Q Consensus       309 ~~~~i~lsP~~~laa-~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap  387 (453)
                      ....++.+|+|++++ +....|.|.++|+.++.+++.+++..  .+.-+...  .+             ..  +|++-..
T Consensus        33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~--~v~~~~~s--pd-------------g~--~l~~~~~   93 (391)
T 1l0q_A           33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS--SPQGVAVS--PD-------------GK--QVYVTNM   93 (391)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS--SEEEEEEC--TT-------------SS--EEEEEET
T ss_pred             CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC--CccceEEC--CC-------------CC--EEEEEEC
Confidence            468899999998764 45578999999999999999887654  22222211  01             11  4555566


Q ss_pred             CCCeEEEeecCCCCeEEEEEecC
Q 012917          388 RKGIIEVWQMRTGPRLLTIQCAK  410 (453)
Q Consensus       388 rRg~lEVW~~~~G~RV~a~~v~~  410 (453)
                      ..|.|.+|++.+|+.+..+..+.
T Consensus        94 ~~~~v~v~d~~~~~~~~~~~~~~  116 (391)
T 1l0q_A           94 ASSTLSVIDTTSNTVAGTVKTGK  116 (391)
T ss_dssp             TTTEEEEEETTTTEEEEEEECSS
T ss_pred             CCCEEEEEECCCCeEEEEEeCCC
Confidence            77999999999998887776544

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=96.49  E-value=0.071  Score=49.60  Aligned_cols=87  Identities=17%  Similarity=0.192  Sum_probs=59.9

Q ss_pred             eeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEE-EEecccccccccccCCCCCCccEEEEEEcCC
Q 012917          310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFME-MLVNKDAATSSAYYAPVKSDYCLCLAIHAPR  388 (453)
Q Consensus       310 ~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~-~~~~~~~~~~~~~~~~~k~~~~l~LvIyapr  388 (453)
                      ...++++|+|+++++++..|+|.++|+.++.+++.++.-.+..-.+.. +.-..+             ..  +|.+-...
T Consensus       187 ~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-------------g~--~l~~~~~~  251 (353)
T 3vgz_A          187 STGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTA-------------RQ--RAFITDSK  251 (353)
T ss_dssp             CCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETT-------------TT--EEEEEESS
T ss_pred             cceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCC-------------CC--EEEEEeCC
Confidence            456789999999999999999999999999999887652221111111 110111             11  34444556


Q ss_pred             CCeEEEeecCCCCeEEEEEecCC
Q 012917          389 KGIIEVWQMRTGPRLLTIQCAKG  411 (453)
Q Consensus       389 Rg~lEVW~~~~G~RV~a~~v~~~  411 (453)
                      .+.|-+|++++|..+..+.++..
T Consensus       252 ~~~v~~~d~~~~~~~~~~~~~~~  274 (353)
T 3vgz_A          252 AAEVLVVDTRNGNILAKVAAPES  274 (353)
T ss_dssp             SSEEEEEETTTCCEEEEEECSSC
T ss_pred             CCEEEEEECCCCcEEEEEEcCCC
Confidence            69999999999999988887653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=96.46  E-value=0.022  Score=52.36  Aligned_cols=87  Identities=7%  Similarity=-0.049  Sum_probs=60.3

Q ss_pred             CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917          308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP  387 (453)
Q Consensus       308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap  387 (453)
                      .....++++|+|++++++|  |+|.++|+.++..++.++.-..  ..-+..  ..              +.. +|++ +-
T Consensus       241 ~~~~~~~~s~dg~~l~~~~--~~v~~~d~~~~~~~~~~~~~~~--~~~~~~--s~--------------dg~-~l~~-~~  298 (337)
T 1pby_B          241 VFYFSTAVNPAKTRAFGAY--NVLESFDLEKNASIKRVPLPHS--YYSVNV--ST--------------DGS-TVWL-GG  298 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEE--SEEEEEETTTTEEEEEEECSSC--CCEEEE--CT--------------TSC-EEEE-ES
T ss_pred             CceeeEEECCCCCEEEEeC--CeEEEEECCCCcCcceecCCCc--eeeEEE--CC--------------CCC-EEEE-Ec
Confidence            4556799999999888884  9999999999998887763211  111111  00              111 2333 35


Q ss_pred             CCCeEEEeecCCCCeEEEEEecCCeEEec
Q 012917          388 RKGIIEVWQMRTGPRLLTIQCAKGSKILQ  416 (453)
Q Consensus       388 rRg~lEVW~~~~G~RV~a~~v~~~~~Ll~  416 (453)
                      ..|.|.||++.+|..+..+.++.+..++.
T Consensus       299 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~  327 (337)
T 1pby_B          299 ALGDLAAYDAETLEKKGQVDLPGNASMSL  327 (337)
T ss_dssp             BSSEEEEEETTTCCEEEEEECGGGCCCBT
T ss_pred             CCCcEEEEECcCCcEEEEEEcCCCCceeE
Confidence            68999999999999999999876544333

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=96.44  E-value=0.019  Score=55.49  Aligned_cols=91  Identities=12%  Similarity=0.161  Sum_probs=67.5

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (453)
                      +.-+...+..++.+|+++.++++...|.|.|+|+.++..++.++|+... +.-+......              +.  -+
T Consensus       150 ~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~-v~~~~~~~~~--------------~g--~~  212 (354)
T 2pbi_B          150 VAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGAD-VLCLDLAPSE--------------TG--NT  212 (354)
T ss_dssp             EEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC-EEEEEECCCS--------------SC--CE
T ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC-eEEEEEEeCC--------------CC--CE
Confidence            4445667889999999999999999999999999999999999998762 1111111010              11  14


Q ss_pred             EEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917          383 AIHAPRKGIIEVWQMRTGPRLLTIQCAK  410 (453)
Q Consensus       383 vIyaprRg~lEVW~~~~G~RV~a~~v~~  410 (453)
                      ++-+..+|.|.+|++++|..+..+..+.
T Consensus       213 l~sgs~Dg~v~~wd~~~~~~~~~~~~h~  240 (354)
T 2pbi_B          213 FVSGGCDKKAMVWDMRSGQCVQAFETHE  240 (354)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence            4667789999999999998887776443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=96.43  E-value=0.017  Score=64.55  Aligned_cols=90  Identities=11%  Similarity=0.069  Sum_probs=70.4

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (453)
                      +..+...+..++.+|+|+++|+....|.|.++|+.++..++.++|+.+    +|....-.+.             .. +|
T Consensus       611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~----~v~~~~~s~~-------------~~-~l  672 (1249)
T 3sfz_A          611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHED----EVLCCAFSSD-------------DS-YI  672 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS----CEEEEEECTT-------------SS-EE
T ss_pred             EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCC----CEEEEEEecC-------------CC-EE
Confidence            556677889999999999999999999999999999999999999887    4433222111             11 33


Q ss_pred             EEEcCCCCeEEEeecCCCCeEEEEEecCC
Q 012917          383 AIHAPRKGIIEVWQMRTGPRLLTIQCAKG  411 (453)
Q Consensus       383 vIyaprRg~lEVW~~~~G~RV~a~~v~~~  411 (453)
                       +-+-.+|.|.||++.+|..+..+..+.+
T Consensus       673 -~s~~~d~~v~vwd~~~~~~~~~~~~~~~  700 (1249)
T 3sfz_A          673 -ATCSADKKVKIWDSATGKLVHTYDEHSE  700 (1249)
T ss_dssp             -EEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             -EEEeCCCeEEEEECCCCceEEEEcCCCC
Confidence             4456799999999999999988876543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=96.43  E-value=0.053  Score=52.71  Aligned_cols=90  Identities=13%  Similarity=0.172  Sum_probs=64.0

Q ss_pred             cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccce---eeEEEEEecccccccccccCCCCCCc
Q 012917          302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDAS---CVFMEMLVNKDAATSSAYYAPVKSDY  378 (453)
Q Consensus       302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAq---c~Wi~~~~~~~~~~~~~~~~~~k~~~  378 (453)
                      .+..+...+.+|+.+|+|+++|++...|.|-|+|+.++..++++++..+..   ..++....          -.|   +.
T Consensus       244 ~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~----------~s~---~g  310 (380)
T 3iz6_a          244 TYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVA----------FSI---SG  310 (380)
T ss_dssp             EECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEE----------ECS---SS
T ss_pred             EECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEE----------ECC---CC
Confidence            355566678899999999999999999999999999999999997754321   11111000          001   11


Q ss_pred             cEEEEEEcCCCCeEEEeecCCCCeEEEE
Q 012917          379 CLCLAIHAPRKGIIEVWQMRTGPRLLTI  406 (453)
Q Consensus       379 ~l~LvIyaprRg~lEVW~~~~G~RV~a~  406 (453)
                      .  +++-+-..|.|.||++.++.++..+
T Consensus       311 ~--~l~~g~~dg~i~vwd~~~~~~~~~~  336 (380)
T 3iz6_a          311 R--LLFAGYSNGDCYVWDTLLAEMVLNL  336 (380)
T ss_dssp             S--EEEEECTTSCEEEEETTTCCEEEEE
T ss_pred             C--EEEEEECCCCEEEEECCCCceEEEE
Confidence            1  3344667999999999999888765

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=96.41  E-value=0.043  Score=52.33  Aligned_cols=78  Identities=17%  Similarity=0.172  Sum_probs=60.5

Q ss_pred             cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEE
Q 012917          302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC  381 (453)
Q Consensus       302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~  381 (453)
                      .|..+...+..++.+|++++++++...|.|.|+|+.++..++.++|+.+.    +....-.+             +..  
T Consensus        71 ~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~----v~~v~~sp-------------~~~--  131 (343)
T 2xzm_R           71 ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSE----VYSVAFSP-------------DNR--  131 (343)
T ss_dssp             EECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSC----EEEEEECS-------------STT--
T ss_pred             hhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCc----EEEEEECC-------------CCC--
Confidence            45666677899999999999999999999999999999999999998873    32221111             111  


Q ss_pred             EEEEcCCCCeEEEeecC
Q 012917          382 LAIHAPRKGIIEVWQMR  398 (453)
Q Consensus       382 LvIyaprRg~lEVW~~~  398 (453)
                      +++-+..+|.|.||+++
T Consensus       132 ~l~s~~~d~~i~~wd~~  148 (343)
T 2xzm_R          132 QILSAGAEREIKLWNIL  148 (343)
T ss_dssp             EEEEEETTSCEEEEESS
T ss_pred             EEEEEcCCCEEEEEecc
Confidence            33567789999999997

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=96.40  E-value=0.046  Score=51.91  Aligned_cols=84  Identities=15%  Similarity=0.188  Sum_probs=62.2

Q ss_pred             CCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecc---c---ccceeeEEEEEecccccccccccCCCCCCc
Q 012917          305 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKG---Y---RDASCVFMEMLVNKDAATSSAYYAPVKSDY  378 (453)
Q Consensus       305 D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKG---y---RdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~  378 (453)
                      .....+.+++.+|++ ++++....|.|.++|+.++..++.+++   +   .. .+.-+...   +             +.
T Consensus       184 ~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~-~i~~i~~~---~-------------~~  245 (397)
T 1sq9_A          184 TPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN-SIRSVKFS---P-------------QG  245 (397)
T ss_dssp             SSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC-CEEEEEEC---S-------------ST
T ss_pred             CCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCC-ccceEEEC---C-------------CC
Confidence            345668899999999 999999999999999999999999998   5   32 22222211   0             11


Q ss_pred             cEEEEEEcCCC---CeEEEeecCCCCeEEEEEe
Q 012917          379 CLCLAIHAPRK---GIIEVWQMRTGPRLLTIQC  408 (453)
Q Consensus       379 ~l~LvIyaprR---g~lEVW~~~~G~RV~a~~v  408 (453)
                      .  +++.+-.+   |.|.||+++++..+..+..
T Consensus       246 ~--~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~  276 (397)
T 1sq9_A          246 S--LLAIAHDSNSFGCITLYETEFGERIGSLSV  276 (397)
T ss_dssp             T--EEEEEEEETTEEEEEEEETTTCCEEEEECB
T ss_pred             C--EEEEEecCCCCceEEEEECCCCcccceecc
Confidence            1  33455567   9999999999999988875

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=96.39  E-value=0.035  Score=50.78  Aligned_cols=53  Identities=13%  Similarity=0.075  Sum_probs=46.5

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeE
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVF  355 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~W  355 (453)
                      +..+...+.+++.+|+|+++|+....|.|.|+|+.++..++.++|+......+
T Consensus        63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~  115 (318)
T 4ggc_A           63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL  115 (318)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEe
Confidence            44566778999999999999999999999999999999999999998865543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=96.33  E-value=0.024  Score=53.83  Aligned_cols=91  Identities=19%  Similarity=0.184  Sum_probs=68.7

Q ss_pred             ccccCCCCeeeEEEECCCC-CEEEEEcCCCcEEEEEcCC-----ceEEEEecccccceeeEEEEEecccccccccccCCC
Q 012917          301 TCLKDHPRKGERLTLSPSG-SLAAITDSLGRILLLDTQA-----LVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPV  374 (453)
Q Consensus       301 ~~l~D~~R~~~~i~lsP~~-~laa~tDslGRV~LiD~~~-----~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~  374 (453)
                      ..|.-+...+.+|+.+|++ ++++++...|.|.++|+..     +..++.++|+.+    .+....-.+           
T Consensus        11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~----~v~~~~~s~-----------   75 (319)
T 3frx_A           11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH----IVQDCTLTA-----------   75 (319)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSS----CEEEEEECT-----------
T ss_pred             EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcc----cEEEEEECC-----------
Confidence            4577888889999999965 8999999999999999864     567889999987    333221111           


Q ss_pred             CCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917          375 KSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAK  410 (453)
Q Consensus       375 k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~  410 (453)
                        +..  +++-+..+|.|.||++++|..+..+..++
T Consensus        76 --dg~--~l~s~s~D~~v~~wd~~~~~~~~~~~~h~  107 (319)
T 3frx_A           76 --DGA--YALSASWDKTLRLWDVATGETYQRFVGHK  107 (319)
T ss_dssp             --TSS--EEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             --CCC--EEEEEeCCCEEEEEECCCCCeeEEEccCC
Confidence              111  44677889999999999998877776444

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=96.30  E-value=0.043  Score=53.40  Aligned_cols=78  Identities=17%  Similarity=0.399  Sum_probs=59.8

Q ss_pred             ECCCCCEEEEEcCCCcEEEEEcCCceEEEEecc--cccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeE
Q 012917          315 LSPSGSLAAITDSLGRILLLDTQALVVVRLWKG--YRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGII  392 (453)
Q Consensus       315 lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKG--yRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~l  392 (453)
                      .+|+++++++....|.|.++|+.++..++.+++  +.+    .+....-.+             +.  -+++-+-.+|.|
T Consensus       178 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~----~v~~~~~s~-------------~~--~~l~s~~~dg~i  238 (437)
T 3gre_A          178 VNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG----AVSSICIDE-------------EC--CVLILGTTRGII  238 (437)
T ss_dssp             ECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGC----CEEEEEECT-------------TS--CEEEEEETTSCE
T ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC----ceEEEEECC-------------CC--CEEEEEcCCCeE
Confidence            778999999999999999999999999999998  444    333222111             11  144667789999


Q ss_pred             EEeecCCCCeEEEEEecCC
Q 012917          393 EVWQMRTGPRLLTIQCAKG  411 (453)
Q Consensus       393 EVW~~~~G~RV~a~~v~~~  411 (453)
                      .||+++++..+..+..+..
T Consensus       239 ~iwd~~~~~~~~~~~~~~~  257 (437)
T 3gre_A          239 DIWDIRFNVLIRSWSFGDH  257 (437)
T ss_dssp             EEEETTTTEEEEEEBCTTC
T ss_pred             EEEEcCCccEEEEEecCCC
Confidence            9999999999988875444

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=96.25  E-value=0.033  Score=52.58  Aligned_cols=90  Identities=18%  Similarity=0.145  Sum_probs=63.5

Q ss_pred             ccCCCCeeeEEEECC-CCCEEEEEcCCCcEEEEEcCCceEEEEec-------------ccccceeeEEEEEecccccccc
Q 012917          303 LKDHPRKGERLTLSP-SGSLAAITDSLGRILLLDTQALVVVRLWK-------------GYRDASCVFMEMLVNKDAATSS  368 (453)
Q Consensus       303 l~D~~R~~~~i~lsP-~~~laa~tDslGRV~LiD~~~~~ivRmWK-------------GyRdAqc~Wi~~~~~~~~~~~~  368 (453)
                      +.-+...+.+++.+| +++++|++...|.|.++|+.++...+..+             |+.+    .+....-       
T Consensus        39 ~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~-------  107 (408)
T 4a11_B           39 ERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY----SVETVQW-------  107 (408)
T ss_dssp             CCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS----CEEEEEE-------
T ss_pred             eeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC----cEEEEEE-------
Confidence            444667899999999 99999999999999999999988776653             2222    1111110       


Q ss_pred             cccCCCCCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917          369 AYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAK  410 (453)
Q Consensus       369 ~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~  410 (453)
                         .+.  +..  +++.+-.+|.|.||+++++..+..+....
T Consensus       108 ---~~~--~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  142 (408)
T 4a11_B          108 ---YPH--DTG--MFTSSSFDKTLKVWDTNTLQTADVFNFEE  142 (408)
T ss_dssp             ---CTT--CTT--CEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred             ---ccC--CCc--EEEEEeCCCeEEEeeCCCCccceeccCCC
Confidence               010  111  34556779999999999999888887544

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=96.20  E-value=0.016  Score=57.53  Aligned_cols=87  Identities=17%  Similarity=0.189  Sum_probs=66.5

Q ss_pred             ccCCCCeeeEEEECCC---CCEEEEEcCCCcEEEEEcCCceEEEE-ecccccceeeEEEEEecccccccccccCCCCCCc
Q 012917          303 LKDHPRKGERLTLSPS---GSLAAITDSLGRILLLDTQALVVVRL-WKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDY  378 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~---~~laa~tDslGRV~LiD~~~~~ivRm-WKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~  378 (453)
                      +......+.+|+.+|+   ++++++++..|.|.++|+.++..++. ..|+.+    ++....-.+          .    
T Consensus       191 ~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~----~v~~~~~sd----------~----  252 (450)
T 2vdu_B          191 ILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH----FVSSICCGK----------D----  252 (450)
T ss_dssp             SEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS----CEEEEEECS----------T----
T ss_pred             eecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC----ceEEEEECC----------C----
Confidence            4455667889999999   99999999999999999999988877 457765    333221111          1    


Q ss_pred             cEEEEEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917          379 CLCLAIHAPRKGIIEVWQMRTGPRLLTIQCA  409 (453)
Q Consensus       379 ~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~  409 (453)
                      .  +++.+-.+|.|.||++++|..+..+..+
T Consensus       253 ~--~l~s~~~d~~v~vwd~~~~~~~~~~~~~  281 (450)
T 2vdu_B          253 Y--LLLSAGGDDKIFAWDWKTGKNLSTFDYN  281 (450)
T ss_dssp             T--EEEEEESSSEEEEEETTTCCEEEEEECH
T ss_pred             C--EEEEEeCCCeEEEEECCCCcEeeeecch
Confidence            1  3456678999999999999999988754

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=96.13  E-value=0.048  Score=51.99  Aligned_cols=91  Identities=13%  Similarity=0.232  Sum_probs=68.1

Q ss_pred             ccccCCCCeeeEEEE-----CC-CCCEEEEEcCCCcEEEEEcCC-------ceEEEEecccccceeeEEEEEeccccccc
Q 012917          301 TCLKDHPRKGERLTL-----SP-SGSLAAITDSLGRILLLDTQA-------LVVVRLWKGYRDASCVFMEMLVNKDAATS  367 (453)
Q Consensus       301 ~~l~D~~R~~~~i~l-----sP-~~~laa~tDslGRV~LiD~~~-------~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~  367 (453)
                      ..|..+...+.+|+.     +| +++++|++...|.|.|+|+.+       +..++..+|+.+    .|....-.+    
T Consensus        15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~----~V~~~~~~~----   86 (343)
T 2xzm_R           15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNH----FVSDLALSQ----   86 (343)
T ss_dssp             EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSS----CEEEEEECS----
T ss_pred             eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCC----ceEEEEECC----
Confidence            457778888999998     77 899999999999999999974       567788888887    333222111    


Q ss_pred             ccccCCCCCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917          368 SAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAK  410 (453)
Q Consensus       368 ~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~  410 (453)
                               +..  +++-+..+|.|.||++++|..+..+..++
T Consensus        87 ---------~~~--~l~s~s~D~~v~lwd~~~~~~~~~~~~h~  118 (343)
T 2xzm_R           87 ---------ENC--FAISSSWDKTLRLWDLRTGTTYKRFVGHQ  118 (343)
T ss_dssp             ---------STT--EEEEEETTSEEEEEETTSSCEEEEEECCC
T ss_pred             ---------CCC--EEEEEcCCCcEEEEECCCCcEEEEEcCCC
Confidence                     111  45678889999999999998887776443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=96.05  E-value=0.04  Score=51.10  Aligned_cols=80  Identities=13%  Similarity=-0.006  Sum_probs=58.1

Q ss_pred             CeeeEEEECC-CCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEc
Q 012917          308 RKGERLTLSP-SGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA  386 (453)
Q Consensus       308 R~~~~i~lsP-~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya  386 (453)
                      .....++++| +|++++++  .|+|.++|+.++.+++.++.-...  ..+..  ..+             ..  +|++ +
T Consensus       255 ~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~--~~~~~--s~d-------------g~--~l~~-~  312 (349)
T 1jmx_B          255 ELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTY--YCVAF--DKK-------------GD--KLYL-G  312 (349)
T ss_dssp             SCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCC--CEEEE--CSS-------------SS--CEEE-E
T ss_pred             CcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCc--cceEE--CCC-------------CC--EEEE-e
Confidence            4567899999 99988888  789999999999999887632221  11111  101             01  2334 5


Q ss_pred             CCCCeEEEeecCCCCeEEEEEec
Q 012917          387 PRKGIIEVWQMRTGPRLLTIQCA  409 (453)
Q Consensus       387 prRg~lEVW~~~~G~RV~a~~v~  409 (453)
                      -..|.|.||++.++..+..+.++
T Consensus       313 ~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          313 GTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             SBSSEEEEEETTTTEEEEEEECS
T ss_pred             cCCCeEEEEeccccceeeeeecC
Confidence            66799999999999999999877

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.03  E-value=0.032  Score=53.21  Aligned_cols=80  Identities=9%  Similarity=0.159  Sum_probs=55.7

Q ss_pred             cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCC----ceEEEEecccccceeeEEEEEecccccccccccCCCCCC
Q 012917          302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQA----LVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSD  377 (453)
Q Consensus       302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~----~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~  377 (453)
                      .|..+...+.+++.+|+|+++|++...|.|.++|+..    ...++..+|+.+    .+....-.+             +
T Consensus       102 ~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~----~v~~v~~~p-------------~  164 (330)
T 2hes_X          102 IIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ----DVKHVIWHP-------------S  164 (330)
T ss_dssp             EEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSS----CEEEEEECS-------------S
T ss_pred             EEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCC----ceEEEEECC-------------C
Confidence            3556667789999999999999999999999999942    367888888876    232221111             1


Q ss_pred             ccEEEEEEcCCCCeEEEeecCCC
Q 012917          378 YCLCLAIHAPRKGIIEVWQMRTG  400 (453)
Q Consensus       378 ~~l~LvIyaprRg~lEVW~~~~G  400 (453)
                      ..  +++-+..+|.|.||+++++
T Consensus       165 ~~--~l~s~s~D~~i~iW~~~~~  185 (330)
T 2hes_X          165 EA--LLASSSYDDTVRIWKDYDD  185 (330)
T ss_dssp             SS--EEEEEETTSCEEEEEEETT
T ss_pred             CC--EEEEEcCCCeEEEEECCCC
Confidence            11  4567788999999998766

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=95.93  E-value=0.15  Score=49.18  Aligned_cols=87  Identities=9%  Similarity=-0.084  Sum_probs=61.5

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (453)
                      +......+..++.+|++++.++....|+|.++|+.++..++.+++.... ...+.....               ..  .|
T Consensus       165 ~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~---------------~~--~l  226 (433)
T 3bws_A          165 YKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKW-SKILLYDPI---------------RD--LV  226 (433)
T ss_dssp             HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSS-EEEEEEETT---------------TT--EE
T ss_pred             ccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCC-eeEEEEcCC---------------CC--EE
Confidence            4455567888999999999999988999999999999999998865442 222222111               01  34


Q ss_pred             EEEcCCCCeEEEeecCCCCeEEEEE
Q 012917          383 AIHAPRKGIIEVWQMRTGPRLLTIQ  407 (453)
Q Consensus       383 vIyaprRg~lEVW~~~~G~RV~a~~  407 (453)
                      ++-....|.|.+|++++|..+..+.
T Consensus       227 ~~~~~~~~~i~~~d~~~~~~~~~~~  251 (433)
T 3bws_A          227 YCSNWISEDISVIDRKTKLEIRKTD  251 (433)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECC
T ss_pred             EEEecCCCcEEEEECCCCcEEEEec
Confidence            3445568899999998877665544

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=95.88  E-value=1.2  Score=41.86  Aligned_cols=91  Identities=12%  Similarity=0.069  Sum_probs=56.1

Q ss_pred             eeeccCcceeeeeecceEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEec-CCc--E
Q 012917           35 LLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDL-KGD--L  111 (453)
Q Consensus        35 ~~~sp~~~~la~A~~~~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte-~G~--L  111 (453)
                      ++.+|+|+.||.+-....|-. |+-..+ .......+.. -...|+++.|-|-.+-..++.|-.+|.|++|+. +|.  .
T Consensus        19 v~~s~~g~~lasgs~D~~v~l-wd~~~~-~~~~~~~l~g-H~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~   95 (316)
T 3bg1_A           19 AQMDYYGTRLATCSSDRSVKI-FDVRNG-GQILIADLRG-HEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEK   95 (316)
T ss_dssp             EEECGGGCEEEEEETTTEEEE-EEEETT-EEEEEEEEEC-CSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCE
T ss_pred             eeEcCCCCEEEEEeCCCeEEE-EEecCC-CcEEEEEEcC-CCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceE
Confidence            667899999888776644321 322211 1111122221 235699988865333457888999999999995 453  4


Q ss_pred             eeecccCccceeEEEEe
Q 012917          112 VHRQLIHPGRILKLRVR  128 (453)
Q Consensus       112 L~sQ~lh~~pV~~ik~r  128 (453)
                      ++...-|..+|..+.+-
T Consensus        96 ~~~~~~h~~~V~~v~~~  112 (316)
T 3bg1_A           96 SHEHAGHDSSVNSVCWA  112 (316)
T ss_dssp             EEEECCCSSCCCEEEEC
T ss_pred             EEEccCCCCceEEEEEC
Confidence            44444588888888754

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=95.82  E-value=0.07  Score=51.59  Aligned_cols=81  Identities=16%  Similarity=0.131  Sum_probs=58.8

Q ss_pred             eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEE-----EecccccceeeEEEEEecccccccccccCCCCCCccEEEE
Q 012917          309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVR-----LWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLA  383 (453)
Q Consensus       309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivR-----mWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~Lv  383 (453)
                      ....++.+|+++++++....|.|.++|+.++..++     .++|+..    ++....-.+             +.  .++
T Consensus       124 ~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~----~v~~~~~~~-------------~~--~~~  184 (433)
T 3bws_A          124 QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLG----FVETISIPE-------------HN--ELW  184 (433)
T ss_dssp             CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCC----EEEEEEEGG-------------GT--EEE
T ss_pred             CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCC----ceeEEEEcC-------------CC--EEE
Confidence            34578999988888888888999999999999998     4555544    333221111             11  244


Q ss_pred             EEcCCCCeEEEeecCCCCeEEEEEe
Q 012917          384 IHAPRKGIIEVWQMRTGPRLLTIQC  408 (453)
Q Consensus       384 IyaprRg~lEVW~~~~G~RV~a~~v  408 (453)
                      +-...+|.|.+|+++++..+..+..
T Consensus       185 ~s~~~d~~v~~~d~~~~~~~~~~~~  209 (433)
T 3bws_A          185 VSQMQANAVHVFDLKTLAYKATVDL  209 (433)
T ss_dssp             EEEGGGTEEEEEETTTCCEEEEEEC
T ss_pred             EEECCCCEEEEEECCCceEEEEEcC
Confidence            5667789999999999988887763

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=95.80  E-value=0.061  Score=50.26  Aligned_cols=82  Identities=12%  Similarity=0.112  Sum_probs=59.6

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCC--ceEEEEecccccceeeEEEEEecccccccccccCCCCCCccE
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQA--LVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~--~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (453)
                      +.-+...+.+++.+|+|+++|++...|.|.|+|+..  +..++.++|+.+.    |....-..          .+ +.. 
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~----V~~v~~s~----------~~-~g~-   68 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGP----VWRVDWAH----------PK-FGT-   68 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSC----EEEEEECC----------GG-GCS-
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCC----eEEEEecC----------CC-cCC-
Confidence            444567788999999999999999999999999974  4778899999873    32221100          00 011 


Q ss_pred             EEEEEcCCCCeEEEeecCCCC
Q 012917          381 CLAIHAPRKGIIEVWQMRTGP  401 (453)
Q Consensus       381 ~LvIyaprRg~lEVW~~~~G~  401 (453)
                       +++-+..+|.|.||++++|.
T Consensus        69 -~l~s~s~D~~v~iWd~~~~~   88 (297)
T 2pm7_B           69 -ILASCSYDGKVMIWKEENGR   88 (297)
T ss_dssp             -EEEEEETTTEEEEEEBSSSC
T ss_pred             -EEEEEcCCCEEEEEEcCCCc
Confidence             45667789999999998773

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=95.75  E-value=0.056  Score=57.01  Aligned_cols=79  Identities=24%  Similarity=0.246  Sum_probs=60.7

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (453)
                      +..+...+.+++++|+|+++++....|.|.|+|+.++..++.++|+.+.    |....-.+             +..  +
T Consensus       426 ~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~----v~~~~~s~-------------~~~--~  486 (694)
T 3dm0_A          426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKD----VLSVAFSL-------------DNR--Q  486 (694)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC----EEEEEECT-------------TSS--C
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCC----EEEEEEeC-------------CCC--E
Confidence            5556667889999999999999999999999999999999999999873    22211111             011  3


Q ss_pred             EEEcCCCCeEEEeecCCC
Q 012917          383 AIHAPRKGIIEVWQMRTG  400 (453)
Q Consensus       383 vIyaprRg~lEVW~~~~G  400 (453)
                      ++-+..+|.|.||++...
T Consensus       487 l~s~s~D~~i~iwd~~~~  504 (694)
T 3dm0_A          487 IVSASRDRTIKLWNTLGE  504 (694)
T ss_dssp             EEEEETTSCEEEECTTSC
T ss_pred             EEEEeCCCEEEEEECCCC
Confidence            467788999999998643

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=95.73  E-value=0.2  Score=46.53  Aligned_cols=81  Identities=16%  Similarity=0.114  Sum_probs=57.2

Q ss_pred             eeeEEEECCCCCEEEEEcCC-CcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917          309 KGERLTLSPSGSLAAITDSL-GRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP  387 (453)
Q Consensus       309 ~~~~i~lsP~~~laa~tDsl-GRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap  387 (453)
                      ....++++|+|+++.+++.. |+|.++|+.++.+++..+.-....+.|-     .              +.. +|.+-..
T Consensus       232 ~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s-----~--------------dg~-~l~v~~~  291 (353)
T 3vgz_A          232 FFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFN-----P--------------ARN-EAYVTHR  291 (353)
T ss_dssp             CEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEE-----T--------------TTT-EEEEEET
T ss_pred             ccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEEC-----C--------------CCC-EEEEEEC
Confidence            45679999999877776655 9999999999999988775332222221     0              111 3445556


Q ss_pred             CCCeEEEeecCCCCeEEEEEec
Q 012917          388 RKGIIEVWQMRTGPRLLTIQCA  409 (453)
Q Consensus       388 rRg~lEVW~~~~G~RV~a~~v~  409 (453)
                      ..|.|.+|++.+|..+..+..+
T Consensus       292 ~~~~v~~~d~~~~~~~~~~~~~  313 (353)
T 3vgz_A          292 QAGKVSVIDAKSYKVVKTFDTP  313 (353)
T ss_dssp             TTTEEEEEETTTTEEEEEEECC
T ss_pred             CCCeEEEEECCCCeEEEEEecC
Confidence            6799999999999888777654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=95.71  E-value=0.026  Score=54.96  Aligned_cols=79  Identities=15%  Similarity=0.092  Sum_probs=56.6

Q ss_pred             eeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCC
Q 012917          310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRK  389 (453)
Q Consensus       310 ~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprR  389 (453)
                      ..+++.+|+|+++++....|.|.++|+.++..++..+....+.-++|....-.+             +..  +++-+..+
T Consensus       301 v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~-------------dg~--~l~sgs~D  365 (380)
T 3iz6_a          301 VTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS-------------DGS--ALCTGSWD  365 (380)
T ss_dssp             CSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECS-------------SSS--EEEEECTT
T ss_pred             eEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECC-------------CCC--EEEEeeCC
Confidence            678999999999999999999999999999988877433222222333221111             111  45678899


Q ss_pred             CeEEEeecCCCCeE
Q 012917          390 GIIEVWQMRTGPRL  403 (453)
Q Consensus       390 g~lEVW~~~~G~RV  403 (453)
                      |.|.||++..++++
T Consensus       366 ~~i~iW~~~~~~~i  379 (380)
T 3iz6_a          366 KNLKIWAFSGHRKI  379 (380)
T ss_dssp             SCEEEEECCSSSSC
T ss_pred             CCEEEEecCCCccc
Confidence            99999999877654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=95.70  E-value=0.047  Score=51.66  Aligned_cols=87  Identities=9%  Similarity=0.042  Sum_probs=59.0

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCce--EEEEecccccceeeEEEEEecccccccccccCCCCCCccE
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALV--VVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~--ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (453)
                      +..+...+.+++.+|+|+++|++...|.|.|+|+.++.  .++.++|+.+    .|....-...         .  +.. 
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~----~V~~v~~~~~---------~--~~~-   72 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEG----PVWQVAWAHP---------M--YGN-   72 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSS----CEEEEEECCG---------G--GSS-
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCc----cEEEEEeCCC---------C--CCC-
Confidence            45566778999999999999999999999999998874  5778899887    3332211000         0  001 


Q ss_pred             EEEEEcCCCCeEEEeecCCCC--eEEEE
Q 012917          381 CLAIHAPRKGIIEVWQMRTGP--RLLTI  406 (453)
Q Consensus       381 ~LvIyaprRg~lEVW~~~~G~--RV~a~  406 (453)
                       +++-+..+|.|.||++++|.  ++..+
T Consensus        73 -~l~s~s~D~~v~iWd~~~~~~~~~~~~   99 (316)
T 3bg1_A           73 -ILASCSYDRKVIIWREENGTWEKSHEH   99 (316)
T ss_dssp             -CEEEEETTSCEEEECCSSSCCCEEEEE
T ss_pred             -EEEEEECCCEEEEEECCCCcceEEEEc
Confidence             34567789999999999874  44443

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=95.68  E-value=0.18  Score=47.81  Aligned_cols=32  Identities=13%  Similarity=0.242  Sum_probs=26.6

Q ss_pred             eeEEEECCCCCEEEEEc-CCCcEEEEEcCCceE
Q 012917          310 GERLTLSPSGSLAAITD-SLGRILLLDTQALVV  341 (453)
Q Consensus       310 ~~~i~lsP~~~laa~tD-slGRV~LiD~~~~~i  341 (453)
                      ...++++|+|+++++++ ..++|.++|+.++.+
T Consensus       213 ~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~  245 (361)
T 3scy_A          213 PRHLIFNSDGKFAYLINEIGGTVIAFRYADGML  245 (361)
T ss_dssp             EEEEEECTTSSEEEEEETTTCEEEEEEEETTEE
T ss_pred             CeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce
Confidence            45799999999887776 689999999987754

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=95.68  E-value=0.064  Score=52.76  Aligned_cols=76  Identities=20%  Similarity=0.225  Sum_probs=57.9

Q ss_pred             EEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeE
Q 012917          313 LTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGII  392 (453)
Q Consensus       313 i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~l  392 (453)
                      .+++++++++++....|.|.++|+.++..++..+|+.+.    |....- +.              .  +++-+-.+|.|
T Consensus       137 ~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~----v~~l~~-~~--------------~--~l~sg~~dg~i  195 (435)
T 1p22_A          137 YCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGS----VLCLQY-DE--------------R--VIITGSSDSTV  195 (435)
T ss_dssp             EEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSC----EEEEEC-CS--------------S--EEEEEETTSCE
T ss_pred             EEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCc----EEEEEE-CC--------------C--EEEEEcCCCeE
Confidence            466779999999999999999999999999999998873    322211 10              1  44566778899


Q ss_pred             EEeecCCCCeEEEEEec
Q 012917          393 EVWQMRTGPRLLTIQCA  409 (453)
Q Consensus       393 EVW~~~~G~RV~a~~v~  409 (453)
                      .||++++|..+..+..+
T Consensus       196 ~vwd~~~~~~~~~~~~h  212 (435)
T 1p22_A          196 RVWDVNTGEMLNTLIHH  212 (435)
T ss_dssp             EEEESSSCCEEEEECCC
T ss_pred             EEEECCCCcEEEEEcCC
Confidence            99999888887776544

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=95.68  E-value=0.042  Score=52.28  Aligned_cols=75  Identities=8%  Similarity=0.033  Sum_probs=55.5

Q ss_pred             eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEE-EEecc-cccceeeEEEEEecccccccccccCCCCCCccEEEEEEc
Q 012917          309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVV-RLWKG-YRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA  386 (453)
Q Consensus       309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~iv-RmWKG-yRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya  386 (453)
                      .+.+++.+|+|+++|+....|.|.++|+.++..+ +.+++ +.+    .|....-.+             + ..+|+.-.
T Consensus       172 ~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~----~v~~l~fs~-------------~-g~~l~s~~  233 (343)
T 3lrv_A          172 EYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEA----KIKEVKFAD-------------N-GYWMVVEC  233 (343)
T ss_dssp             CCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTS----CEEEEEECT-------------T-SSEEEEEE
T ss_pred             ceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCC----CEEEEEEeC-------------C-CCEEEEEe
Confidence            3678999999999999999999999999999988 88888 654    333222111             1 11444444


Q ss_pred             CCCCeEEEeecCCCCeE
Q 012917          387 PRKGIIEVWQMRTGPRL  403 (453)
Q Consensus       387 prRg~lEVW~~~~G~RV  403 (453)
                        .+.|.||+++++..+
T Consensus       234 --~~~v~iwd~~~~~~~  248 (343)
T 3lrv_A          234 --DQTVVCFDLRKDVGT  248 (343)
T ss_dssp             --SSBEEEEETTSSTTC
T ss_pred             --CCeEEEEEcCCCCcc
Confidence              569999999998765

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=95.62  E-value=0.049  Score=53.47  Aligned_cols=87  Identities=11%  Similarity=0.102  Sum_probs=63.2

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (453)
                      |..+...... +++++++++++....|.|.++|+.++..++.++|+.+.    |....-.+             +.   +
T Consensus       117 l~~h~~~v~~-~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~----V~~l~~~~-------------~~---~  175 (464)
T 3v7d_B          117 LRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGG----VWALKYAH-------------GG---I  175 (464)
T ss_dssp             EECCSSSCEE-EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC----EEEEEECS-------------TT---E
T ss_pred             EcCCCCCcEE-EEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcC----EEEEEEcC-------------CC---E
Confidence            4444333322 56677889999999999999999999999999998873    33221111             11   4


Q ss_pred             EEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917          383 AIHAPRKGIIEVWQMRTGPRLLTIQCAK  410 (453)
Q Consensus       383 vIyaprRg~lEVW~~~~G~RV~a~~v~~  410 (453)
                      ++-+..+|.|.||++++|..+..+..+.
T Consensus       176 l~s~s~dg~i~vwd~~~~~~~~~~~~h~  203 (464)
T 3v7d_B          176 LVSGSTDRTVRVWDIKKGCCTHVFEGHN  203 (464)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             EEEEeCCCCEEEEECCCCcEEEEECCCC
Confidence            5667789999999999998887776443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=95.58  E-value=0.032  Score=54.91  Aligned_cols=38  Identities=11%  Similarity=0.024  Sum_probs=35.1

Q ss_pred             EECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccc
Q 012917          314 TLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA  351 (453)
Q Consensus       314 ~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdA  351 (453)
                      +++|+|+++++.+..|.|.++|+.++..++.++|+.+.
T Consensus       124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~  161 (445)
T 2ovr_B          124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG  161 (445)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSC
T ss_pred             EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCC
Confidence            67788999999999999999999999999999999874

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=95.45  E-value=0.12  Score=49.44  Aligned_cols=79  Identities=15%  Similarity=0.190  Sum_probs=58.3

Q ss_pred             CCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCc--eEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917          305 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQAL--VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (453)
Q Consensus       305 D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~--~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (453)
                      .+...+.+|+.+|+|+++|++...|.|.|+|+.++  ..++..+|+.+.    |....-.+             +..  +
T Consensus        59 ~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~----v~~v~~sp-------------~~~--~  119 (345)
T 3fm0_A           59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENE----VKSVAWAP-------------SGN--L  119 (345)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSC----EEEEEECT-------------TSS--E
T ss_pred             ccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCC----ceEEEEeC-------------CCC--E
Confidence            45667899999999999999999999999999876  467888888773    32221111             011  4


Q ss_pred             EEEcCCCCeEEEeecCCCCe
Q 012917          383 AIHAPRKGIIEVWQMRTGPR  402 (453)
Q Consensus       383 vIyaprRg~lEVW~~~~G~R  402 (453)
                      ++-+-.+|.|.||+++.+..
T Consensus       120 l~s~s~D~~v~iwd~~~~~~  139 (345)
T 3fm0_A          120 LATCSRDKSVWVWEVDEEDE  139 (345)
T ss_dssp             EEEEETTSCEEEEEECTTSC
T ss_pred             EEEEECCCeEEEEECCCCCC
Confidence            45677899999999987643

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=95.43  E-value=0.078  Score=55.28  Aligned_cols=85  Identities=12%  Similarity=0.144  Sum_probs=65.7

Q ss_pred             ccCCCCeeeEEEECCCCC-EEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEE
Q 012917          303 LKDHPRKGERLTLSPSGS-LAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC  381 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~-laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~  381 (453)
                      |..+.+.+.+++.+|++. ++|++...|.|.|+|..++..++.++|+.+    +|....-.+             +..  
T Consensus       143 l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~----~V~~v~fsp-------------dg~--  203 (611)
T 1nr0_A          143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK----FVHSVRYNP-------------DGS--  203 (611)
T ss_dssp             CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSS----CEEEEEECT-------------TSS--
T ss_pred             ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccC----ceEEEEECC-------------CCC--
Confidence            455667899999999986 577888889999999999999999999988    554433221             111  


Q ss_pred             EEEEcCCCCeEEEeecCCCCeEEEE
Q 012917          382 LAIHAPRKGIIEVWQMRTGPRLLTI  406 (453)
Q Consensus       382 LvIyaprRg~lEVW~~~~G~RV~a~  406 (453)
                      +++-+..+|.|.||++++|..+..+
T Consensus       204 ~las~s~D~~i~lwd~~~g~~~~~~  228 (611)
T 1nr0_A          204 LFASTGGDGTIVLYNGVDGTKTGVF  228 (611)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEC
T ss_pred             EEEEEECCCcEEEEECCCCcEeeee
Confidence            4567888999999999888776655

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=95.40  E-value=0.23  Score=45.56  Aligned_cols=78  Identities=19%  Similarity=0.172  Sum_probs=52.8

Q ss_pred             eeEEEECCCCCEEEEEc------------CCCcEEEEEcCCceEEEEeccccc-ceeeEEEEEecccccccccccCCCCC
Q 012917          310 GERLTLSPSGSLAAITD------------SLGRILLLDTQALVVVRLWKGYRD-ASCVFMEMLVNKDAATSSAYYAPVKS  376 (453)
Q Consensus       310 ~~~i~lsP~~~laa~tD------------slGRV~LiD~~~~~ivRmWKGyRd-Aqc~Wi~~~~~~~~~~~~~~~~~~k~  376 (453)
                      ...++++|+|+++++++            .-++|.++|+.++.+++..+.-.. ..+.|-     .+             
T Consensus        84 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s-----~d-------------  145 (337)
T 1pby_B           84 LFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWA-----RD-------------  145 (337)
T ss_dssp             TTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEEC-----TT-------------
T ss_pred             ccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEEC-----CC-------------
Confidence            34688999998888875            469999999999999887764221 111110     01             


Q ss_pred             CccEEEEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917          377 DYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAK  410 (453)
Q Consensus       377 ~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~  410 (453)
                      ...++..     .+.|.+|++.+|..+..+..+.
T Consensus       146 g~~l~~~-----~~~i~~~d~~~~~~~~~~~~~~  174 (337)
T 1pby_B          146 GSKLYGL-----GRDLHVMDPEAGTLVEDKPIQS  174 (337)
T ss_dssp             SSCEEEE-----SSSEEEEETTTTEEEEEECSTT
T ss_pred             CCEEEEe-----CCeEEEEECCCCcEeeeeeccc
Confidence            1112222     6889999999998887776554

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=95.33  E-value=0.053  Score=51.41  Aligned_cols=77  Identities=16%  Similarity=-0.004  Sum_probs=52.5

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCce---EEEEecc-cccceeeEEEEEecccccccccccCCCCCCc
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALV---VVRLWKG-YRDASCVFMEMLVNKDAATSSAYYAPVKSDY  378 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~---ivRmWKG-yRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~  378 (453)
                      +......+..++.+|+++++++....|.|.++|+.++.   +++.+++ +.+    .+....-.+             +.
T Consensus        96 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~----~v~~~~~~~-------------~~  158 (377)
T 3dwl_C           96 LLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS----TILSLDWHP-------------NN  158 (377)
T ss_dssp             CCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCS----CEEEEEECT-------------TS
T ss_pred             ecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCC----CeEEEEEcC-------------CC
Confidence            44556778999999999999999999999999999988   5778877 654    222211111             11


Q ss_pred             cEEEEEEcCCCCeEEEeecC
Q 012917          379 CLCLAIHAPRKGIIEVWQMR  398 (453)
Q Consensus       379 ~l~LvIyaprRg~lEVW~~~  398 (453)
                      .  +++.+-.+|.|.||+++
T Consensus       159 ~--~l~~~~~d~~i~iwd~~  176 (377)
T 3dwl_C          159 V--LLAAGCADRKAYVLSAY  176 (377)
T ss_dssp             S--EEEEEESSSCEEEEEEC
T ss_pred             C--EEEEEeCCCEEEEEEEE
Confidence            1  44667788999999984

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=95.29  E-value=0.13  Score=49.58  Aligned_cols=88  Identities=8%  Similarity=0.058  Sum_probs=55.9

Q ss_pred             cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEE
Q 012917          302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC  381 (453)
Q Consensus       302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~  381 (453)
                      .+..+...+.+++.+|+|+++|+....| +.++|+.++..+.....- .  ...+.....               ..  +
T Consensus        14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~-~--~~~~~~~~~---------------~~--~   72 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR-H--LSKVRMLHR---------------TN--Y   72 (355)
T ss_dssp             -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS-C--CCEEEECTT---------------SS--E
T ss_pred             ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC-C--eEEEEEcCC---------------CC--E
Confidence            3566778899999999999988876556 679999888766543211 1  122221100               01  4


Q ss_pred             EEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917          382 LAIHAPRKGIIEVWQMRTGPRLLTIQCAK  410 (453)
Q Consensus       382 LvIyaprRg~lEVW~~~~G~RV~a~~v~~  410 (453)
                      +++-.-.++.|.||++++|..+..+....
T Consensus        73 ~~~~~~~d~~v~iWd~~~~~~~~~~~~~~  101 (355)
T 3vu4_A           73 VAFVTGVKEVVHIWDDVKKQDVSRIKVDA  101 (355)
T ss_dssp             EEEECSSTTEEEEEETTTTEEEEEEECSS
T ss_pred             EEEEECCccEEEEEECCCCcEEEEEECCC
Confidence            55666677899999999998888776443

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=95.23  E-value=0.13  Score=48.83  Aligned_cols=80  Identities=13%  Similarity=0.135  Sum_probs=57.9

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCc--eEEEEecccccceeeEEEEEecccccccccccCCCCCCccE
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQAL--VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~--~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (453)
                      +......+.+++.+|+++++|++...|.|-|+|+.++  ..++.++|+.+    ++....-.+          .. ..  
T Consensus       149 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~----~v~~~~~~~----------~~-~~--  211 (330)
T 2hes_X          149 LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG----TVWSSDFDK----------TE-GV--  211 (330)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS----CEEEEEECC----------SS-SS--
T ss_pred             eccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCC----cEEEEEecC----------CC-Ce--
Confidence            4455567889999999999999999999999999876  67888999887    343221111          00 01  


Q ss_pred             EEEEEcCCCCeEEEeecCC
Q 012917          381 CLAIHAPRKGIIEVWQMRT  399 (453)
Q Consensus       381 ~LvIyaprRg~lEVW~~~~  399 (453)
                      .+++-+..+|.|.||+++.
T Consensus       212 ~~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          212 FRLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             CEEEEEETTSCEEEEEEEE
T ss_pred             eEEEEEeCCCeEEEEEecC
Confidence            2445677889999998754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=95.17  E-value=0.14  Score=50.44  Aligned_cols=80  Identities=15%  Similarity=0.143  Sum_probs=54.8

Q ss_pred             ccCCCCeeeEEEECC-CCCEEEEEcCCCcEEEEEcCCceEEEE--ecccccceeeEEEEEecccccccccccCCCCCCcc
Q 012917          303 LKDHPRKGERLTLSP-SGSLAAITDSLGRILLLDTQALVVVRL--WKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYC  379 (453)
Q Consensus       303 l~D~~R~~~~i~lsP-~~~laa~tDslGRV~LiD~~~~~ivRm--WKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~  379 (453)
                      ..-..+.+.+|+.+| +++++|+.+..|.|.|+|+.++....+  .+|+.++    |....=.          |.  +..
T Consensus       115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~----V~~l~f~----------p~--~~~  178 (435)
T 4e54_B          115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGS----ITGLKFN----------PL--NTN  178 (435)
T ss_dssp             EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCC----CCEEEEC----------SS--CTT
T ss_pred             CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCC----EEEEEEe----------CC--CCC
Confidence            334457899999999 568999999999999999987765444  4566652    2111100          00  111


Q ss_pred             EEEEEEcCCCCeEEEeecCCC
Q 012917          380 LCLAIHAPRKGIIEVWQMRTG  400 (453)
Q Consensus       380 l~LvIyaprRg~lEVW~~~~G  400 (453)
                        +++-+..+|.|.||+++++
T Consensus       179 --~l~s~s~D~~v~iwd~~~~  197 (435)
T 4e54_B          179 --QFYASSMEGTTRLQDFKGN  197 (435)
T ss_dssp             --EEEEECSSSCEEEEETTSC
T ss_pred             --EEEEEeCCCEEEEeeccCC
Confidence              3467788999999999754

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=95.08  E-value=0.17  Score=56.32  Aligned_cols=81  Identities=16%  Similarity=0.114  Sum_probs=60.2

Q ss_pred             CCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEE
Q 012917          306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH  385 (453)
Q Consensus       306 ~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIy  385 (453)
                      ....+.+++.+|+++++|+....|.|.|+|..++..+...++  ...+.-+...             +.    .  +++-
T Consensus        16 h~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~--~~~V~~l~fs-------------pg----~--~L~S   74 (902)
T 2oaj_A           16 MSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLED--RSAIKEMRFV-------------KG----I--YLVV   74 (902)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSS--CCCEEEEEEE-------------TT----T--EEEE
T ss_pred             CCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCC--CCCEEEEEEc-------------CC----C--EEEE
Confidence            456689999999999999999999999999999887776553  2222222221             11    1  3455


Q ss_pred             cCCCCeEEEeecCCCCeEEEEE
Q 012917          386 APRKGIIEVWQMRTGPRLLTIQ  407 (453)
Q Consensus       386 aprRg~lEVW~~~~G~RV~a~~  407 (453)
                      +-.+|.|.||++++|..+..+.
T Consensus        75 ~s~D~~v~lWd~~~~~~~~~~~   96 (902)
T 2oaj_A           75 INAKDTVYVLSLYSQKVLTTVF   96 (902)
T ss_dssp             EETTCEEEEEETTTCSEEEEEE
T ss_pred             EECcCeEEEEECCCCcEEEEEc
Confidence            6789999999999999887775

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=95.01  E-value=0.18  Score=46.47  Aligned_cols=83  Identities=17%  Similarity=0.201  Sum_probs=61.7

Q ss_pred             ccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccE
Q 012917          301 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (453)
Q Consensus       301 ~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (453)
                      ..|......+..++.+|+|+++++....|.|.++|..........+...+........  . +             . . 
T Consensus        80 ~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~-------------~-~-  141 (340)
T 4aow_A           80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS--S-D-------------N-R-  141 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC--T-T-------------S-S-
T ss_pred             EEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEe--e-c-------------C-c-
Confidence            3455666789999999999999999999999999999999999888777644433221  0 0             0 1 


Q ss_pred             EEEEEcCCCCeEEEeecCCCCe
Q 012917          381 CLAIHAPRKGIIEVWQMRTGPR  402 (453)
Q Consensus       381 ~LvIyaprRg~lEVW~~~~G~R  402 (453)
                       +++-+..+|.+.+|+++...+
T Consensus       142 -~l~s~s~d~~~~~~d~~~~~~  162 (340)
T 4aow_A          142 -QIVSGSRDKTIKLWNTLGVCK  162 (340)
T ss_dssp             -CEEEEETTSCEEEECTTSCEE
T ss_pred             -cceeecCCCeEEEEEeCCCce
Confidence             235567788999998875544

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=94.85  E-value=0.075  Score=59.08  Aligned_cols=97  Identities=12%  Similarity=0.141  Sum_probs=65.6

Q ss_pred             CccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEE-----Eec-ccccceeeEEEEEecccccccccccCC
Q 012917          300 LTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVR-----LWK-GYRDASCVFMEMLVNKDAATSSAYYAP  373 (453)
Q Consensus       300 l~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivR-----mWK-GyRdAqc~Wi~~~~~~~~~~~~~~~~~  373 (453)
                      +..|..+.-.+.+|+.||+| ++|+.+..|.|.|+|+.++.++.     -|+ |+.+    ||...+=.-     ...++
T Consensus       568 ~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~----~V~sv~Fs~-----~~~~~  637 (902)
T 2oaj_A          568 STAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSA----CVTCIEFVI-----MEYGD  637 (902)
T ss_dssp             EEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCC----CEEEEEEEE-----EECTT
T ss_pred             eEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhcccccc----ceEEEEEEE-----EecCC
Confidence            34466677789999999999 99999999999999999988874     343 5554    443222110     00001


Q ss_pred             CCCCccEEEEEEcCCCCeEEEeec---CCCCeEEEEEe
Q 012917          374 VKSDYCLCLAIHAPRKGIIEVWQM---RTGPRLLTIQC  408 (453)
Q Consensus       374 ~k~~~~l~LvIyaprRg~lEVW~~---~~G~RV~a~~v  408 (453)
                      ...+ . -.++-+..+|.|.+|++   ++|..++.+.-
T Consensus       638 Dg~~-~-~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~  673 (902)
T 2oaj_A          638 DGYS-S-ILMVCGTDMGEVITYKILPASGGKFDVQLMD  673 (902)
T ss_dssp             SSSE-E-EEEEEEETTSEEEEEEEEECGGGCEEEEEEE
T ss_pred             CCCc-c-eEEEEEecCCcEEEEEEecCCCCcEEEEecC
Confidence            1000 1 24466788999999999   89998877753

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=94.81  E-value=0.2  Score=49.47  Aligned_cols=92  Identities=16%  Similarity=0.182  Sum_probs=61.0

Q ss_pred             CCccccCCCCeeeEEEECCCCC-EEEEEcCCCcEEEEEcCCceE-------EEEecccccceeeEEEEEecccccccccc
Q 012917          299 PLTCLKDHPRKGERLTLSPSGS-LAAITDSLGRILLLDTQALVV-------VRLWKGYRDASCVFMEMLVNKDAATSSAY  370 (453)
Q Consensus       299 pl~~l~D~~R~~~~i~lsP~~~-laa~tDslGRV~LiD~~~~~i-------vRmWKGyRdAqc~Wi~~~~~~~~~~~~~~  370 (453)
                      ++..+..+...+..|+.+|+++ ++++++..|.|.|+|+.++..       .+.++++... +.-+..   .+       
T Consensus       173 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~-v~~v~~---~p-------  241 (430)
T 2xyi_A          173 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAV-VEDVAW---HL-------  241 (430)
T ss_dssp             CSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSC-EEEEEE---CS-------
T ss_pred             CcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCC-EeeeEE---eC-------
Confidence            3445667777899999999988 999999999999999998321       4566665542 111111   00       


Q ss_pred             cCCCCCCccEEEEEEcCCCCeEEEeecCCC---CeEEEEEe
Q 012917          371 YAPVKSDYCLCLAIHAPRKGIIEVWQMRTG---PRLLTIQC  408 (453)
Q Consensus       371 ~~~~k~~~~l~LvIyaprRg~lEVW~~~~G---~RV~a~~v  408 (453)
                         .  +..  +++-+-..|.|.||+++++   ..+..+..
T Consensus       242 ---~--~~~--~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~  275 (430)
T 2xyi_A          242 ---L--HES--LFGSVADDQKLMIWDTRNNNTSKPSHTVDA  275 (430)
T ss_dssp             ---S--CTT--EEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred             ---C--CCC--EEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence               0  111  3445667899999999987   34445443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=94.47  E-value=0.57  Score=48.89  Aligned_cols=82  Identities=16%  Similarity=-0.033  Sum_probs=56.7

Q ss_pred             eeEEEECCCCCEEEEEcCCCcEEEEEc--CCceEEEEecccccceeeEEEEEec-c-cccccccccCCCCCCccEEEEEE
Q 012917          310 GERLTLSPSGSLAAITDSLGRILLLDT--QALVVVRLWKGYRDASCVFMEMLVN-K-DAATSSAYYAPVKSDYCLCLAIH  385 (453)
Q Consensus       310 ~~~i~lsP~~~laa~tDslGRV~LiD~--~~~~ivRmWKGyRdAqc~Wi~~~~~-~-~~~~~~~~~~~~k~~~~l~LvIy  385 (453)
                      ...+.+||+|+++++++..|.|.+||+  .++.+++..+.-.+.  .-+.+..- . +             ..  +|++-
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p--~~va~sp~~~~d-------------g~--~l~v~  243 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEA--RSVESSKFKGYE-------------DR--YTIAG  243 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEE--EEEEECCSTTCT-------------TT--EEEEE
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCc--ceEEeCCCcCCC-------------CC--EEEEE
Confidence            567889999999999888899999999  899998887754331  11111100 0 1             11  23333


Q ss_pred             cCCCCeEEEeecCCCCeEEEEEe
Q 012917          386 APRKGIIEVWQMRTGPRLLTIQC  408 (453)
Q Consensus       386 aprRg~lEVW~~~~G~RV~a~~v  408 (453)
                      .-..+.|.||+.+++..+..+.+
T Consensus       244 ~~~~~~v~v~D~~t~~~~~~i~~  266 (543)
T 1nir_A          244 AYWPPQFAIMDGETLEPKQIVST  266 (543)
T ss_dssp             EEESSEEEEEETTTCCEEEEEEC
T ss_pred             EccCCeEEEEeccccccceeecc
Confidence            33468899999999988888775

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=94.44  E-value=0.2  Score=52.34  Aligned_cols=107  Identities=15%  Similarity=0.295  Sum_probs=67.9

Q ss_pred             ECCCCCEEEEEcCCCcEEEEEcCCceEEEEec-ccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEE
Q 012917          315 LSPSGSLAAITDSLGRILLLDTQALVVVRLWK-GYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIE  393 (453)
Q Consensus       315 lsP~~~laa~tDslGRV~LiD~~~~~ivRmWK-GyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lE  393 (453)
                      ++|++++.++....|.|.+||..++.+++.++ |+.   . +.-.... +              .. +|++- -+.|.|.
T Consensus       145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~---~-~~v~~sp-d--------------g~-~l~v~-~~d~~V~  203 (543)
T 1nir_A          145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA---V-HISRMSA-S--------------GR-YLLVI-GRDARID  203 (543)
T ss_dssp             CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT---E-EEEEECT-T--------------SC-EEEEE-ETTSEEE
T ss_pred             cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc---c-ceEEECC-C--------------CC-EEEEE-CCCCeEE
Confidence            78999888888778999999999999999999 765   2 2221211 1              11 23222 3459999


Q ss_pred             Eeec--CCCCeEEEEEecCCeEEe--cc----ccccCccCCCCCCcCcEEEEEeCCCCce
Q 012917          394 VWQM--RTGPRLLTIQCAKGSKIL--QP----TYRFGSSMASSPYVPLEVFLLNGDSGQL  445 (453)
Q Consensus       394 VW~~--~~G~RV~a~~v~~~~~Ll--~~----~~~~~g~~~~~~~~~~~~~lld~~~g~l  445 (453)
                      +|++  .++..+..+.++.+-+=+  .+    .-+..-   ...+.+.++.++|..++++
T Consensus       204 v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~---v~~~~~~~v~v~D~~t~~~  260 (543)
T 1nir_A          204 MIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTI---AGAYWPPQFAIMDGETLEP  260 (543)
T ss_dssp             EEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEE---EEEEESSEEEEEETTTCCE
T ss_pred             EEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEE---EEEccCCeEEEEecccccc
Confidence            9999  889888888866543222  11    111000   1114456777777766654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=94.43  E-value=0.078  Score=54.41  Aligned_cols=119  Identities=18%  Similarity=0.102  Sum_probs=71.4

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCC--cEEEEEcCCceEEEEecccccc--eee-EEEEEecccccccccccCCCCCC
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLG--RILLLDTQALVVVRLWKGYRDA--SCV-FMEMLVNKDAATSSAYYAPVKSD  377 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslG--RV~LiD~~~~~ivRmWKGyRdA--qc~-Wi~~~~~~~~~~~~~~~~~~k~~  377 (453)
                      |.+.......++.||||+++|.+|..|  +|.++|+.++... +..++...  ... |-...         ..-.   .+
T Consensus       190 l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~s---pd  256 (582)
T 3o4h_A          190 FDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITW---------LGYL---PD  256 (582)
T ss_dssp             ECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEE---------EEEC---TT
T ss_pred             eecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccc---------eeEc---CC
Confidence            444455668899999999988888888  9999999999887 76665321  011 00000         0000   12


Q ss_pred             ccEEEEEEcCCCCeEEEeecCCCCeE-------EEEEecCCeEEeccccccCccCCCCCCcCcEEEEEeCCCCceEEE
Q 012917          378 YCLCLAIHAPRKGIIEVWQMRTGPRL-------LTIQCAKGSKILQPTYRFGSSMASSPYVPLEVFLLNGDSGQLSVL  448 (453)
Q Consensus       378 ~~l~LvIyaprRg~lEVW~~~~G~RV-------~a~~v~~~~~Ll~~~~~~~g~~~~~~~~~~~~~lld~~~g~l~~i  448 (453)
                      .  .+++.+-++|.+.||.+  |..+       ..+... +++++...        ++.-.|.+++++|.+ |.++.+
T Consensus       257 g--~~~~~~~~~g~~~l~~~--g~~~~~~~~~v~~~~~s-dg~~l~~~--------s~~~~p~~l~~~d~~-~~~~~l  320 (582)
T 3o4h_A          257 G--RLAVVARREGRSAVFID--GERVEAPQGNHGRVVLW-RGKLVTSH--------TSLSTPPRIVSLPSG-EPLLEG  320 (582)
T ss_dssp             S--CEEEEEEETTEEEEEET--TEEECCCSSEEEEEEEE-TTEEEEEE--------EETTEEEEEEEETTC-CEEECC
T ss_pred             C--cEEEEEEcCCcEEEEEE--CCeeccCCCceEEEEec-CCEEEEEE--------cCCCCCCeEEEEcCC-CceEEE
Confidence            2  35566677899999998  5433       333333 33433221        223456788888874 355443

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=94.37  E-value=0.76  Score=45.57  Aligned_cols=47  Identities=15%  Similarity=0.156  Sum_probs=35.5

Q ss_pred             cccCCCCeeeEEEECCCCCEEEEEcCC---CcEEEEEcCCceEEEEecccc
Q 012917          302 CLKDHPRKGERLTLSPSGSLAAITDSL---GRILLLDTQALVVVRLWKGYR  349 (453)
Q Consensus       302 ~l~D~~R~~~~i~lsP~~~laa~tDsl---GRV~LiD~~~~~ivRmWKGyR  349 (453)
                      .|.........++.||+|+++|.+...   .+|.++|+.++...++ .++.
T Consensus       173 ~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l-~~~~  222 (415)
T 2hqs_A          173 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFP  222 (415)
T ss_dssp             EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEE-ECCS
T ss_pred             EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEe-ecCC
Confidence            355555678899999999888776544   4999999999988764 4443

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=94.32  E-value=0.54  Score=43.73  Aligned_cols=67  Identities=6%  Similarity=0.024  Sum_probs=47.7

Q ss_pred             CCEEEEEcCCCcEEEEEcCCce----EEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEE
Q 012917          319 GSLAAITDSLGRILLLDTQALV----VVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEV  394 (453)
Q Consensus       319 ~~laa~tDslGRV~LiD~~~~~----ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEV  394 (453)
                      ++++|+....|.|.|+|+.++.    .++.++|+.+    ||....-.+.         . ...  .+++-+..+|.|.|
T Consensus       170 ~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~----~V~~v~~sp~---------~-~~~--~~las~s~D~~v~i  233 (297)
T 2pm7_B          170 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD----WVRDVAWSPT---------V-LLR--SYMASVSQDRTCII  233 (297)
T ss_dssp             CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS----CEEEEEECCC---------C-SSS--EEEEEEETTSCEEE
T ss_pred             cceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC----ceEEEEECCC---------C-CCc--eEEEEEECCCcEEE
Confidence            6788998899999999998876    7778899987    5543322110         0 001  24567888999999


Q ss_pred             eecCCCC
Q 012917          395 WQMRTGP  401 (453)
Q Consensus       395 W~~~~G~  401 (453)
                      |+++++.
T Consensus       234 Wd~~~~~  240 (297)
T 2pm7_B          234 WTQDNEQ  240 (297)
T ss_dssp             EEESSTT
T ss_pred             EEeCCCC
Confidence            9998753

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=94.21  E-value=1.9  Score=39.33  Aligned_cols=29  Identities=7%  Similarity=0.130  Sum_probs=23.0

Q ss_pred             eeEEEECCCCCEEEEEc-CCCcEEEEEcCC
Q 012917          310 GERLTLSPSGSLAAITD-SLGRILLLDTQA  338 (453)
Q Consensus       310 ~~~i~lsP~~~laa~tD-slGRV~LiD~~~  338 (453)
                      ...++.+|+|+++++++ ..|+|.++|+..
T Consensus       180 ~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~  209 (343)
T 1ri6_A          180 PRHMVFHPNEQYAYCVNELNSSVDVWELKD  209 (343)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred             cceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence            34699999998766654 789999999943

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=94.18  E-value=0.49  Score=49.62  Aligned_cols=43  Identities=12%  Similarity=-0.011  Sum_probs=36.2

Q ss_pred             CCeeeEEEECCCCCEEEEEcC-CC-----cEEEEEcCCceEEEEecccc
Q 012917          307 PRKGERLTLSPSGSLAAITDS-LG-----RILLLDTQALVVVRLWKGYR  349 (453)
Q Consensus       307 ~R~~~~i~lsP~~~laa~tDs-lG-----RV~LiD~~~~~ivRmWKGyR  349 (453)
                      .+....++.||+|+++|.+.. .|     .|.++|+.++...++..+..
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~   84 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKV   84 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGG
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhh
Confidence            456789999999998887665 77     99999999999999887654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=94.07  E-value=0.36  Score=42.74  Aligned_cols=46  Identities=17%  Similarity=0.203  Sum_probs=37.9

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCC-ceEEEEecccc
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQA-LVVVRLWKGYR  349 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~-~~ivRmWKGyR  349 (453)
                      +.........++.+|+|+++|++. .|.|.++|+.+ +...++.++..
T Consensus        37 ~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~   83 (297)
T 2ojh_A           37 VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFA   83 (297)
T ss_dssp             EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTC
T ss_pred             eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccc
Confidence            334456788999999999888865 68999999999 99998887764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=94.01  E-value=0.38  Score=46.75  Aligned_cols=91  Identities=9%  Similarity=0.009  Sum_probs=58.9

Q ss_pred             eeeeccCcceeeeeecc---eEEEEeecCCCCCc-eeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEe-cC
Q 012917           34 NLLCALDMHTIALANRY---QTVIINWADPEGLV-AKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LK  108 (453)
Q Consensus        34 ~~~~sp~~~~la~A~~~---~~v~~~w~~~~~~~-~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt-e~  108 (453)
                      .++.+|++..++.+-..   .+.+..|+...... ..-...+.. ....|+++.+=  ||-..||+|..+|.|++|+ ++
T Consensus       224 ~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~V~~~~~S--pdg~~lasgs~D~~V~iwd~~~  300 (365)
T 4h5i_A          224 KINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTN-RFKGITSMDVD--MKGELAVLASNDNSIALVKLKD  300 (365)
T ss_dssp             EEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEES-SCSCEEEEEEC--TTSCEEEEEETTSCEEEEETTT
T ss_pred             EEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecC-CCCCeEeEEEC--CCCCceEEEcCCCEEEEEECCC
Confidence            35667888887776433   34444554332111 111122222 23557776553  6888999999999999999 56


Q ss_pred             CcEeee-cccCccceeEEEE
Q 012917          109 GDLVHR-QLIHPGRILKLRV  127 (453)
Q Consensus       109 G~LL~s-Q~lh~~pV~~ik~  127 (453)
                      |.++.. ..-|..+|..|.+
T Consensus       301 ~~~~~~~~~gH~~~V~~v~f  320 (365)
T 4h5i_A          301 LSMSKIFKQAHSFAITEVTI  320 (365)
T ss_dssp             TEEEEEETTSSSSCEEEEEE
T ss_pred             CcEEEEecCcccCCEEEEEE
Confidence            888776 3579999999996

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=93.95  E-value=0.37  Score=52.11  Aligned_cols=77  Identities=10%  Similarity=0.063  Sum_probs=59.6

Q ss_pred             CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCce-------EEEEecccccceeeEEEEEecccccccccccCCCCCCccE
Q 012917          308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALV-------VVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (453)
Q Consensus       308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~-------ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (453)
                      |.+.+++.||+|++.|++...|.|-|+|+.++.       .++.++++...+-.||....-.+             + . 
T Consensus       130 ~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-------------d-g-  194 (588)
T 2j04_A          130 RTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-------------D-V-  194 (588)
T ss_dssp             TCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-------------T-E-
T ss_pred             ccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-------------C-c-
Confidence            457799999999999999999999999999995       58898666544445887654321             2 2 


Q ss_pred             EEEEEcCCCCeEEEeecCCCC
Q 012917          381 CLAIHAPRKGIIEVWQMRTGP  401 (453)
Q Consensus       381 ~LvIyaprRg~lEVW~~~~G~  401 (453)
                        ++-+..++.+.+|+++.+.
T Consensus       195 --Laass~D~tVrlWd~~~~~  213 (588)
T 2j04_A          195 --LVAALSNNSVFSMTVSASS  213 (588)
T ss_dssp             --EEEEETTCCEEEECCCSSS
T ss_pred             --EEEEeCCCeEEEEECCCCc
Confidence              3446669999999998766

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=93.89  E-value=0.51  Score=44.71  Aligned_cols=77  Identities=17%  Similarity=0.074  Sum_probs=53.0

Q ss_pred             EEECCCCCEEEE-EcCCC--cEEEEEcCCceEEEEecccccce--eeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917          313 LTLSPSGSLAAI-TDSLG--RILLLDTQALVVVRLWKGYRDAS--CVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP  387 (453)
Q Consensus       313 i~lsP~~~laa~-tDslG--RV~LiD~~~~~ivRmWKGyRdAq--c~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap  387 (453)
                      .+.||+|+++|. ++..|  +|.++|+.++.+.++-.|..+..  ..|-    + +              ..  .++|+.
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~s----p-d--------------g~--~l~~~~   99 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLS----P-D--------------DD--ALFYVK   99 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEEC----T-T--------------SS--EEEEEE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEc----C-C--------------CC--EEEEEe
Confidence            678999986666 45467  59999999999999998876543  2221    1 1              11  234555


Q ss_pred             CCCeEEEeecCCCCeEEEEEecC
Q 012917          388 RKGIIEVWQMRTGPRLLTIQCAK  410 (453)
Q Consensus       388 rRg~lEVW~~~~G~RV~a~~v~~  410 (453)
                      .++.|-+|++.+|........+.
T Consensus       100 ~~~~l~~~d~~~g~~~~~~~~~~  122 (388)
T 3pe7_A          100 DGRNLMRVDLATLEENVVYQVPA  122 (388)
T ss_dssp             TTTEEEEEETTTCCEEEEEECCT
T ss_pred             CCCeEEEEECCCCcceeeeechh
Confidence            66789999999988765554443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=93.89  E-value=0.44  Score=44.09  Aligned_cols=84  Identities=10%  Similarity=-0.007  Sum_probs=51.4

Q ss_pred             CCeeeEEEECCCCCEEEEEc-CCCcEEEEEcCCceE-EEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEE
Q 012917          307 PRKGERLTLSPSGSLAAITD-SLGRILLLDTQALVV-VRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI  384 (453)
Q Consensus       307 ~R~~~~i~lsP~~~laa~tD-slGRV~LiD~~~~~i-vRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI  384 (453)
                      .+.. .++++|+|+++.+++ ..++|.++|+.++.+ ++..........+ +..  ..              +.. +|+.
T Consensus        40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~--s~--------------dg~-~l~~  100 (331)
T 3u4y_A           40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMAD-VDI--TP--------------DDQ-FAVT  100 (331)
T ss_dssp             CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCC-EEE--CT--------------TSS-EEEE
T ss_pred             CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccc-eEE--CC--------------CCC-EEEE
Confidence            3445 899999998666654 488999999999987 6666554332110 111  00              111 2332


Q ss_pred             EcCCCC--eEEEeecCCCCeEEEEEec
Q 012917          385 HAPRKG--IIEVWQMRTGPRLLTIQCA  409 (453)
Q Consensus       385 yaprRg--~lEVW~~~~G~RV~a~~v~  409 (453)
                      .....+  .|.+|++.+|..+..+..+
T Consensus       101 ~~~~~~~~~i~v~d~~~~~~~~~~~~~  127 (331)
T 3u4y_A          101 VTGLNHPFNMQSYSFLKNKFISTIPIP  127 (331)
T ss_dssp             CCCSSSSCEEEEEETTTTEEEEEEECC
T ss_pred             ecCCCCcccEEEEECCCCCeEEEEECC
Confidence            222222  8999999888877766543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=93.88  E-value=0.38  Score=47.44  Aligned_cols=89  Identities=12%  Similarity=0.172  Sum_probs=60.7

Q ss_pred             ccCCCCeeeEEEECC-CCCEEEEEcCCCcEEEEEcCCc---eEEEEecccccceeeEEEEEecccccccccccCCCCCCc
Q 012917          303 LKDHPRKGERLTLSP-SGSLAAITDSLGRILLLDTQAL---VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDY  378 (453)
Q Consensus       303 l~D~~R~~~~i~lsP-~~~laa~tDslGRV~LiD~~~~---~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~  378 (453)
                      +......+..|+.+| ++.++|+....|.|.++|+.++   ..+...+++...    +....-.+          . .. 
T Consensus       227 ~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----v~~i~~~p----------~-~~-  290 (430)
T 2xyi_A          227 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE----VNCLSFNP----------Y-SE-  290 (430)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSC----EEEEEECS----------S-CT-
T ss_pred             ecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCC----eEEEEeCC----------C-CC-
Confidence            444556789999999 6789999999999999999987   566666666542    22211111          0 01 


Q ss_pred             cEEEEEEcCCCCeEEEeecCC-CCeEEEEEec
Q 012917          379 CLCLAIHAPRKGIIEVWQMRT-GPRLLTIQCA  409 (453)
Q Consensus       379 ~l~LvIyaprRg~lEVW~~~~-G~RV~a~~v~  409 (453)
                        ++++-+-.+|.|.||++++ +..+..+..+
T Consensus       291 --~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h  320 (430)
T 2xyi_A          291 --FILATGSADKTVALWDLRNLKLKLHSFESH  320 (430)
T ss_dssp             --TEEEEEETTSEEEEEETTCTTSCSEEEECC
T ss_pred             --CEEEEEeCCCeEEEEeCCCCCCCeEEeecC
Confidence              2445566789999999998 4556666543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=93.82  E-value=0.52  Score=44.26  Aligned_cols=34  Identities=18%  Similarity=0.209  Sum_probs=25.7

Q ss_pred             CeeeEEEECCCCCEEEEEc--CCCcEEEEEcCCceE
Q 012917          308 RKGERLTLSPSGSLAAITD--SLGRILLLDTQALVV  341 (453)
Q Consensus       308 R~~~~i~lsP~~~laa~tD--slGRV~LiD~~~~~i  341 (453)
                      .....+++||+|+++++.+  .-|+|.++|+.++..
T Consensus        40 ~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~   75 (347)
T 3hfq_A           40 QNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTA   75 (347)
T ss_dssp             SCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEE
T ss_pred             CCcceEEEccCCeEEEEEecCCCceEEEEEecCCcE
Confidence            3445699999999665553  369999999987764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=93.74  E-value=1.3  Score=41.74  Aligned_cols=31  Identities=13%  Similarity=0.178  Sum_probs=24.6

Q ss_pred             eeeEEEECCCCCEEEEEcC-CCcEEEEEcCCc
Q 012917          309 KGERLTLSPSGSLAAITDS-LGRILLLDTQAL  339 (453)
Q Consensus       309 ~~~~i~lsP~~~laa~tDs-lGRV~LiD~~~~  339 (453)
                      +...++++|+|++++++|. .++|.++|+...
T Consensus       156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~  187 (361)
T 3scy_A          156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPN  187 (361)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEEeCCCCEEEEEEEcCC
Confidence            4677999999997777765 688999987643

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=93.65  E-value=1.2  Score=41.02  Aligned_cols=74  Identities=14%  Similarity=0.055  Sum_probs=47.8

Q ss_pred             eeEEEECCCCCEEEEEc-CCCcEEEEEcCCceE---EEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEE
Q 012917          310 GERLTLSPSGSLAAITD-SLGRILLLDTQALVV---VRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH  385 (453)
Q Consensus       310 ~~~i~lsP~~~laa~tD-slGRV~LiD~~~~~i---vRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIy  385 (453)
                      ...++++|+|+++.+++ ..++|.++|+.++..   ++.+.+-..  ..-+.+             .|   +.. +|++-
T Consensus       178 ~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~--~~~~~~-------------sp---dg~-~l~v~  238 (331)
T 3u4y_A          178 PFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNL--PGTIVV-------------SR---DGS-TVYVL  238 (331)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSC--CCCEEE-------------CT---TSS-EEEEE
T ss_pred             ccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCC--CceEEE-------------CC---CCC-EEEEE
Confidence            47889999998666654 578999999999987   665543211  111111             01   111 34444


Q ss_pred             cCCCCeEEEeecCCCCe
Q 012917          386 APRKGIIEVWQMRTGPR  402 (453)
Q Consensus       386 aprRg~lEVW~~~~G~R  402 (453)
                      ....+.|.+|++.+|..
T Consensus       239 ~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          239 TESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             CSSEEEEEEEETTTTEE
T ss_pred             EcCCCEEEEEECCCCce
Confidence            45678899999998876

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=93.59  E-value=0.71  Score=46.94  Aligned_cols=95  Identities=12%  Similarity=0.055  Sum_probs=55.4

Q ss_pred             CCCeeeEEEECCC----CCEEEEEcCCCcEEEEEcCCceEEEE-ecccccceeeEEEEEeccccc----ccccccCCCC-
Q 012917          306 HPRKGERLTLSPS----GSLAAITDSLGRILLLDTQALVVVRL-WKGYRDASCVFMEMLVNKDAA----TSSAYYAPVK-  375 (453)
Q Consensus       306 ~~R~~~~i~lsP~----~~laa~tDslGRV~LiD~~~~~ivRm-WKGyRdAqc~Wi~~~~~~~~~----~~~~~~~~~k-  375 (453)
                      +.|.+.+|+.||+    +++.+.+...  +-++++.++..+.- ..||-.    +|++..-.+.+    +...+..... 
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~----~V~~~~~s~dG~~~~s~~~~~~~v~~  183 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQ----QVEVMTFAEDGGGKENQFLMPPEETI  183 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEESSSTTC----EEEEEEECTTSCEEEEEEECCCSSCE
T ss_pred             cccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEecccCCCC----cEEEEEECCCCceeeeeccCCCceee
Confidence            3478889999999    8888775444  44467777877776 456544    44433321111    0000000000 


Q ss_pred             -------CCccEEEEEEcCCCCeEEEeecCCCCeEEEEEe
Q 012917          376 -------SDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQC  408 (453)
Q Consensus       376 -------~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v  408 (453)
                             .+.  -+++-+..++.|.||++++|+.+.+++-
T Consensus       184 l~fs~~~g~~--~~LaSgS~D~TIkIWDl~TGk~l~tL~g  221 (356)
T 2w18_A          184 LTFAEVQGMQ--EALLGTTIMNNIVIWNLKTGQLLKKMHI  221 (356)
T ss_dssp             EEEEEEETST--TEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EEeeccCCCC--ceEEEecCCCcEEEEECCCCcEEEEEcC
Confidence                   011  1456778899999999999999999974

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=93.52  E-value=1.1  Score=41.90  Aligned_cols=122  Identities=18%  Similarity=0.224  Sum_probs=60.9

Q ss_pred             eEEEECCCCCEEEEE-cCCCcEEEEEcCC--ceEEE--Eeccccc-----ceeeEEEEEecccccccccccCCCCCCccE
Q 012917          311 ERLTLSPSGSLAAIT-DSLGRILLLDTQA--LVVVR--LWKGYRD-----ASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (453)
Q Consensus       311 ~~i~lsP~~~laa~t-DslGRV~LiD~~~--~~ivR--mWKGyRd-----Aqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (453)
                      ..++++|+|++++++ ...++|.++|+..  +....  .......     ....-+..             .|   +.. 
T Consensus       190 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~-------------sp---dG~-  252 (347)
T 3hfq_A          190 RHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRL-------------SH---DGH-  252 (347)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEE-------------CT---TSC-
T ss_pred             ceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEE-------------CC---CCC-
Confidence            469999999966664 5678898988774  54322  2222111     01111111             01   111 


Q ss_pred             EEEEEcCCCCeEEEeecCC-C--CeEEEEEec---CCeEEeccccccCccCCCCCCcCcEEEEEeCCCCceEEEec
Q 012917          381 CLAIHAPRKGIIEVWQMRT-G--PRLLTIQCA---KGSKILQPTYRFGSSMASSPYVPLEVFLLNGDSGQLSVLNR  450 (453)
Q Consensus       381 ~LvIyaprRg~lEVW~~~~-G--~RV~a~~v~---~~~~Ll~~~~~~~g~~~~~~~~~~~~~lld~~~g~l~~i~~  450 (453)
                      +|++-....+.|.||++.. |  ..+..+..+   +.+.-+.+.-+.+-.. ...-..-.+|-+|+.+|+|+.+..
T Consensus       253 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~-~~~~~~v~v~~~d~~tg~l~~~~~  327 (347)
T 3hfq_A          253 FLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVV-NQNTDNATLYARDLTSGKLSLLQK  327 (347)
T ss_dssp             EEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEE-ETTTTEEEEEEECTTTCCEEEEEE
T ss_pred             EEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEE-EcCCCcEEEEEEeCCCCeEEeccc
Confidence            4444455578999999972 3  444444441   1122222222111100 000112445555998999997765

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=93.49  E-value=2.1  Score=42.41  Aligned_cols=40  Identities=20%  Similarity=0.244  Sum_probs=30.0

Q ss_pred             CCCeeeEEEECCCCCEEE-EE--cCCCcEEEEEcCCceEEEEe
Q 012917          306 HPRKGERLTLSPSGSLAA-IT--DSLGRILLLDTQALVVVRLW  345 (453)
Q Consensus       306 ~~R~~~~i~lsP~~~laa-~t--DslGRV~LiD~~~~~ivRmW  345 (453)
                      .......++.+|+|+++| +.  |...+|.++|+.++...++-
T Consensus       221 ~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~  263 (415)
T 2hqs_A          221 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT  263 (415)
T ss_dssp             CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECC
T ss_pred             CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCc
Confidence            344678999999998766 44  33456999999999876554

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=93.46  E-value=0.94  Score=40.03  Aligned_cols=120  Identities=18%  Similarity=0.196  Sum_probs=63.3

Q ss_pred             eeEEEECCCCCEEE-EEcCCC--cEEEEEcCCceEEEEecccccc-eeeEEEEEecccccccccccCCCCCCccEEEEEE
Q 012917          310 GERLTLSPSGSLAA-ITDSLG--RILLLDTQALVVVRLWKGYRDA-SCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH  385 (453)
Q Consensus       310 ~~~i~lsP~~~laa-~tDslG--RV~LiD~~~~~ivRmWKGyRdA-qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIy  385 (453)
                      ...++.+|+|++++ +.+..|  +|..+|+.++...++...-... .+.|-     .+             ..  +|++-
T Consensus       131 ~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s-----~d-------------g~--~l~~~  190 (297)
T 2ojh_A          131 SYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYS-----PD-------------GR--WIYFN  190 (297)
T ss_dssp             EEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEEC-----TT-------------SS--EEEEE
T ss_pred             ccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceEC-----CC-------------CC--EEEEE
Confidence            56789999998776 455556  5666667778776665433221 11110     01             01  34555


Q ss_pred             cCCCCeEEEeecC-CCCeEEEEE----------ecCCeEEeccccccCccCCCCCCcCcEEEEEeCCCCceEEEe
Q 012917          386 APRKGIIEVWQMR-TGPRLLTIQ----------CAKGSKILQPTYRFGSSMASSPYVPLEVFLLNGDSGQLSVLN  449 (453)
Q Consensus       386 aprRg~lEVW~~~-~G~RV~a~~----------v~~~~~Ll~~~~~~~g~~~~~~~~~~~~~lld~~~g~l~~i~  449 (453)
                      +.+.+.++||.+. .+..+..+.          ..+.++.|.....-.+......+...+++++|..+|.++.+.
T Consensus       191 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~  265 (297)
T 2ojh_A          191 SSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF  265 (297)
T ss_dssp             ECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred             ecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence            5567888888876 454444333          222222111111110000000123478999999888876554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=93.15  E-value=0.95  Score=41.43  Aligned_cols=82  Identities=12%  Similarity=0.097  Sum_probs=48.7

Q ss_pred             CCeeeEEEECCCCCEEEEEc-CCCcEEEEEcC----CceEEEEecccccc-eeeEEEEEecccccccccccCCCCCCccE
Q 012917          307 PRKGERLTLSPSGSLAAITD-SLGRILLLDTQ----ALVVVRLWKGYRDA-SCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (453)
Q Consensus       307 ~R~~~~i~lsP~~~laa~tD-slGRV~LiD~~----~~~ivRmWKGyRdA-qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (453)
                      .+....|+.+|+|+++++++ ..|+|.++|+.    +...+......... .++|-                +   +.. 
T Consensus       230 ~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s----------------~---dg~-  289 (343)
T 1ri6_A          230 TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVD----------------H---SGK-  289 (343)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEEC----------------T---TSS-
T ss_pred             cCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEEC----------------C---CCC-
Confidence            35667899999998777655 68999999998    34444444332211 11110                0   111 


Q ss_pred             EEEEEcCCCCeEEEeec--CCC--CeEEEEEe
Q 012917          381 CLAIHAPRKGIIEVWQM--RTG--PRLLTIQC  408 (453)
Q Consensus       381 ~LvIyaprRg~lEVW~~--~~G--~RV~a~~v  408 (453)
                      +|++-....|.|.||++  ++|  .++..+.+
T Consensus       290 ~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~  321 (343)
T 1ri6_A          290 YLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV  321 (343)
T ss_dssp             EEEEECTTTCEEEEEEEETTTTEEEEEEEEEC
T ss_pred             EEEEecCCCCeEEEEEEcCCCceeeEcccccc
Confidence            45555556799999954  455  34444443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=93.12  E-value=0.41  Score=44.20  Aligned_cols=80  Identities=11%  Similarity=-0.030  Sum_probs=54.9

Q ss_pred             EEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeE
Q 012917          313 LTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGII  392 (453)
Q Consensus       313 i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~l  392 (453)
                      +++++++++.++....|.|.++|+.++.+++.++.-..-...-+.+.  .              +.. ++++-....+.|
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s--~--------------dg~-~~~v~~~~~~~i   67 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMA--P--------------DNR-TAYVLNNHYGDI   67 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEEC--T--------------TSS-EEEEEETTTTEE
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEEC--C--------------CCC-EEEEEeCCCCcE
Confidence            45778888888888889999999999999988875431011111111  0              111 344555678999


Q ss_pred             EEeecCCCCeEEEEEec
Q 012917          393 EVWQMRTGPRLLTIQCA  409 (453)
Q Consensus       393 EVW~~~~G~RV~a~~v~  409 (453)
                      .+|++.+|..+..+..+
T Consensus        68 ~~~d~~t~~~~~~~~~~   84 (349)
T 1jmx_B           68 YGIDLDTCKNTFHANLS   84 (349)
T ss_dssp             EEEETTTTEEEEEEESC
T ss_pred             EEEeCCCCcEEEEEEcc
Confidence            99999999888777753

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=92.66  E-value=3.3  Score=39.67  Aligned_cols=36  Identities=8%  Similarity=0.013  Sum_probs=29.5

Q ss_pred             CCeeeEEEECCCCCEEEEEcC-CCcEEEEEcC-CceEE
Q 012917          307 PRKGERLTLSPSGSLAAITDS-LGRILLLDTQ-ALVVV  342 (453)
Q Consensus       307 ~R~~~~i~lsP~~~laa~tDs-lGRV~LiD~~-~~~iv  342 (453)
                      ......++++|+|++++++|. .++|.++|+. +|.+.
T Consensus       144 ~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~  181 (365)
T 1jof_A          144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVE  181 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEE
T ss_pred             CCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEE
Confidence            356788999999998888875 5799999998 77654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=92.59  E-value=1.6  Score=41.16  Aligned_cols=129  Identities=12%  Similarity=0.008  Sum_probs=66.5

Q ss_pred             CCeeeEEEECC-CCCEEEEEcC------CCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCcc
Q 012917          307 PRKGERLTLSP-SGSLAAITDS------LGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYC  379 (453)
Q Consensus       307 ~R~~~~i~lsP-~~~laa~tDs------lGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~  379 (453)
                      ......+..|| +|+++|.+..      ..+|.++|+..+.+.++..+.....+.-.. ..+ +          +   ..
T Consensus       187 ~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~-~sp-d----------g---~~  251 (388)
T 3pe7_A          187 NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEF-WVP-D----------G---SA  251 (388)
T ss_dssp             SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEE-ECT-T----------S---SC
T ss_pred             CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccce-ECC-C----------C---CE
Confidence            34567899999 9977666433      349999999988877776544221111111 111 1          1   12


Q ss_pred             EEEEEEcCCC--CeEEEeecCCCCeEEEEEecC--------CeEEeccccccCccCCC-----CCCcCcEEEEEeCCCCc
Q 012917          380 LCLAIHAPRK--GIIEVWQMRTGPRLLTIQCAK--------GSKILQPTYRFGSSMAS-----SPYVPLEVFLLNGDSGQ  444 (453)
Q Consensus       380 l~LvIyaprR--g~lEVW~~~~G~RV~a~~v~~--------~~~Ll~~~~~~~g~~~~-----~~~~~~~~~lld~~~g~  444 (453)
                      +.++-+....  +.|-+|++.+|.+..-...+.        .+..+.+.-+.+-....     +.....+++++|.++|+
T Consensus       252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~  331 (388)
T 3pe7_A          252 LVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT  331 (388)
T ss_dssp             EEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred             EEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence            2222222222  248999999987433222111        11111111111110000     01234689999999998


Q ss_pred             eEEEec
Q 012917          445 LSVLNR  450 (453)
Q Consensus       445 l~~i~~  450 (453)
                      ++.+..
T Consensus       332 ~~~l~~  337 (388)
T 3pe7_A          332 QHRVAR  337 (388)
T ss_dssp             EEEEEE
T ss_pred             eEEecc
Confidence            887653

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=92.49  E-value=0.93  Score=49.00  Aligned_cols=73  Identities=11%  Similarity=0.229  Sum_probs=47.5

Q ss_pred             CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEeccccc----ceeeEEEEEecccccccccccCCCCCCccEEEE
Q 012917          308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD----ASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLA  383 (453)
Q Consensus       308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRd----Aqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~Lv  383 (453)
                      ..+..++-||+|++.|++++.|.|.|+|..+  .+...+ .-.    .++.=+..             +|. .+   +| 
T Consensus        86 ~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svaf-------------SPD-G~---~L-  144 (588)
T 2j04_A           86 CYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEW-------------NPI-ES---SI-  144 (588)
T ss_dssp             CCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEE-------------CSS-SS---CE-
T ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEE-------------cCC-CC---EE-
Confidence            5689999999999999999999999999655  333333 110    01111111             111 11   23 


Q ss_pred             EEcCCCCeEEEeecCCCC
Q 012917          384 IHAPRKGIIEVWQMRTGP  401 (453)
Q Consensus       384 IyaprRg~lEVW~~~~G~  401 (453)
                      .-+..+|.|+||+++.|.
T Consensus       145 Asgs~DGtVkIWd~~~~~  162 (588)
T 2j04_A          145 VVGNEDGELQFFSIRKNS  162 (588)
T ss_dssp             EEEETTSEEEEEECCCCT
T ss_pred             EEEcCCCEEEEEECCCCc
Confidence            345779999999999874

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=91.94  E-value=0.65  Score=46.81  Aligned_cols=84  Identities=19%  Similarity=0.073  Sum_probs=55.9

Q ss_pred             ccCCCCeeeEEEECCC-CCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEE
Q 012917          303 LKDHPRKGERLTLSPS-GSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC  381 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~-~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~  381 (453)
                      +..+...+..|+.+|+ ++++|++...|.|.++|+.++..+...+|+++.    +....=.+             +.. +
T Consensus       145 ~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~----v~~v~wsp-------------dg~-~  206 (434)
T 2oit_A          145 LKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA----VTSVCWSP-------------KGK-Q  206 (434)
T ss_dssp             CCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC----EEEEEECT-------------TSS-C
T ss_pred             cCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc----eeEEEEcC-------------CCC-E
Confidence            3344567899999997 789999889999999999999777666666542    21111111             011 2


Q ss_pred             EEEEcCCCCeEEEeecCCCCeEEEE
Q 012917          382 LAIHAPRKGIIEVWQMRTGPRLLTI  406 (453)
Q Consensus       382 LvIyaprRg~lEVW~~~~G~RV~a~  406 (453)
                      |+ -+-.+|.|.||+++ |.....+
T Consensus       207 la-sgs~dg~v~iwd~~-~~~~~~~  229 (434)
T 2oit_A          207 LA-VGKQNGTVVQYLPT-LQEKKVI  229 (434)
T ss_dssp             EE-EEETTSCEEEECTT-CCEEEEE
T ss_pred             EE-EEcCCCcEEEEccC-Ccccccc
Confidence            33 34578999999998 5444433

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=91.84  E-value=4.6  Score=38.99  Aligned_cols=116  Identities=14%  Similarity=0.076  Sum_probs=73.5

Q ss_pred             cccCCCCe-eeEEEECCCCCEEEEEc--CCCcEEEEEcCCceEEEEec---ccccceeeEEEEEecccccccccccCCCC
Q 012917          302 CLKDHPRK-GERLTLSPSGSLAAITD--SLGRILLLDTQALVVVRLWK---GYRDASCVFMEMLVNKDAATSSAYYAPVK  375 (453)
Q Consensus       302 ~l~D~~R~-~~~i~lsP~~~laa~tD--slGRV~LiD~~~~~ivRmWK---GyRdAqc~Wi~~~~~~~~~~~~~~~~~~k  375 (453)
                      .++-.++. -+-|.++|+++|.+++-  .-++|..+|+.++.+++-..   +++-..+.+.     .             
T Consensus        14 ~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~-----g-------------   75 (266)
T 2iwa_A           14 EFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL-----N-------------   75 (266)
T ss_dssp             EEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-----T-------------
T ss_pred             EEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe-----C-------------
Confidence            34444443 47788999987777763  35799999999999999754   3333222221     0             


Q ss_pred             CCccEEEEEEcCCCCeEEEeecCCCCeEEEEEec-C-CeEEeccccccCccCCCCCCcCcEEEEEeCCCCc
Q 012917          376 SDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCA-K-GSKILQPTYRFGSSMASSPYVPLEVFLLNGDSGQ  444 (453)
Q Consensus       376 ~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~-~-~~~Ll~~~~~~~g~~~~~~~~~~~~~lld~~~g~  444 (453)
                       + .  |.+-.-+.+.+.|++..++..+..|.++ + |.-|-+.+.++.-+   .  ..+.+.+||+.+.+
T Consensus        76 -~-~--lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs---~--gs~~l~viD~~t~~  137 (266)
T 2iwa_A           76 -E-K--LYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGS---D--GTSILYEIDPHTFK  137 (266)
T ss_dssp             -T-E--EEEEETTCSEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEE---C--SSSEEEEECTTTCC
T ss_pred             -C-E--EEEEEecCCEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEE---C--CCCeEEEEECCCCc
Confidence             1 2  4455667899999999999999999886 3 22233222222111   1  14677788776644

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=91.76  E-value=0.44  Score=46.59  Aligned_cols=86  Identities=7%  Similarity=-0.009  Sum_probs=58.3

Q ss_pred             ccCCCCeeeEEEECC--------CCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCC
Q 012917          303 LKDHPRKGERLTLSP--------SGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPV  374 (453)
Q Consensus       303 l~D~~R~~~~i~lsP--------~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~  374 (453)
                      +.-+...+.+|+.+|        +++++|..-..+.|.|+|+.++..+...+++++.-.. +.. .+.            
T Consensus       132 ~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~-v~~-~p~------------  197 (393)
T 4gq1_A          132 KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGIS-VQF-RPS------------  197 (393)
T ss_dssp             TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEE-EEE-ETT------------
T ss_pred             cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEE-EEE-CCC------------
Confidence            445566788999988        7899999888999999999887766666666663211 111 010            


Q ss_pred             CCCccEEEEEEcCCCCeEEEeecCCCCeEEEE
Q 012917          375 KSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTI  406 (453)
Q Consensus       375 k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~  406 (453)
                        +.  .+++-+..+|.|.||+++++......
T Consensus       198 --~~--~~l~~~~~d~~v~~wd~~t~~~~~~~  225 (393)
T 4gq1_A          198 --NP--NQLIVGERNGNIRIFDWTLNLSAEEN  225 (393)
T ss_dssp             --EE--EEEEEEETTSEEEEEETTCCC-----
T ss_pred             --CC--ceEEecCCCCEEEEEECCCCcccccc
Confidence              11  35567888999999999998765443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=91.73  E-value=0.34  Score=48.84  Aligned_cols=81  Identities=14%  Similarity=0.049  Sum_probs=54.7

Q ss_pred             CCeeeEEEECCCCCEEE----EEcCCCcEEEEEcCCc-----------eEEEEecccccceeeEEEEEeccccccccccc
Q 012917          307 PRKGERLTLSPSGSLAA----ITDSLGRILLLDTQAL-----------VVVRLWKGYRDASCVFMEMLVNKDAATSSAYY  371 (453)
Q Consensus       307 ~R~~~~i~lsP~~~laa----~tDslGRV~LiD~~~~-----------~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~  371 (453)
                      +..+.+++.+|+|+++|    .....|.|.++|+.++           ..+++++|+.+.    +....-.+        
T Consensus        92 ~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~----V~~v~~~p--------  159 (434)
T 2oit_A           92 KFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGM----VIDMKWNP--------  159 (434)
T ss_dssp             SSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGS----EEEEEECS--------
T ss_pred             CCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCc----eEEEEECC--------
Confidence            45689999999999888    4567899999999876           136777777652    21111111        


Q ss_pred             CCCCCCccEEEEEEcCCCCeEEEeecCCCCeEEE
Q 012917          372 APVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLT  405 (453)
Q Consensus       372 ~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a  405 (453)
                        .  ...  +++-+..+|.|.||+++++..+..
T Consensus       160 --~--~~~--~las~s~Dg~v~iwD~~~~~~~~~  187 (434)
T 2oit_A          160 --T--VPS--MVAVCLADGSIAVLQVTETVKVCA  187 (434)
T ss_dssp             --S--CTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred             --C--CCC--EEEEEECCCeEEEEEcCCCcceee
Confidence              0  011  334566799999999998865543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=91.49  E-value=1.5  Score=42.83  Aligned_cols=103  Identities=14%  Similarity=0.087  Sum_probs=51.9

Q ss_pred             CCCCeeeEEEECCCC-CEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccc---cccccCCC------
Q 012917          305 DHPRKGERLTLSPSG-SLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAAT---SSAYYAPV------  374 (453)
Q Consensus       305 D~~R~~~~i~lsP~~-~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~---~~~~~~~~------  374 (453)
                      .....+.+++.+|++ +++++.+..|.|.|+|+.++....--.+..+....|...........   ...+....      
T Consensus       184 ~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~  263 (393)
T 4gq1_A          184 PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI  263 (393)
T ss_dssp             ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEE
T ss_pred             CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeee
Confidence            334557789999987 58888999999999999999988877777777766765544322110   00010000      


Q ss_pred             CCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917          375 KSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCA  409 (453)
Q Consensus       375 k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~  409 (453)
                      ..+..  .++-+...+.+.||+++.++....+..+
T Consensus       264 ~~dg~--~l~s~s~d~~i~vwd~~~~~~~~~l~~~  296 (393)
T 4gq1_A          264 GSDGS--GILAMCKSGAWLRWNLFANNDYNEISDS  296 (393)
T ss_dssp             TTTTC--EEEEECTTSEEEEEEC------------
T ss_pred             cCCCC--EEEEEeCCCCEEEEECccCCCCceEeee
Confidence            01111  3455677899999999998877666543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=91.44  E-value=0.82  Score=47.28  Aligned_cols=128  Identities=16%  Similarity=0.143  Sum_probs=71.1

Q ss_pred             CCeeeEEEECCCCCEEEEEcCCC--cEEEEEcCCceEEEEecccccce-eeEEEEEecccccccccccCCCCCCccEEEE
Q 012917          307 PRKGERLTLSPSGSLAAITDSLG--RILLLDTQALVVVRLWKGYRDAS-CVFMEMLVNKDAATSSAYYAPVKSDYCLCLA  383 (453)
Q Consensus       307 ~R~~~~i~lsP~~~laa~tDslG--RV~LiD~~~~~ivRmWKGyRdAq-c~Wi~~~~~~~~~~~~~~~~~~k~~~~l~Lv  383 (453)
                      ......+..+|+|++++++|..|  +|.++|+.++...++..+..+.. ..|..    .  . ....-.+   +..  ++
T Consensus       241 ~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~----~--~-~~~~~~~---~~~--~~  308 (662)
T 3azo_A          241 EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTP----G--M-RWFAPLA---NGL--IA  308 (662)
T ss_dssp             TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCST----T--C-CSEEECT---TSC--EE
T ss_pred             CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccc----c--C-ceEeEeC---CCE--EE
Confidence            35567889999999988888778  89999998888888776544321 11110    0  0 0000000   111  33


Q ss_pred             EEcCCCCeEEEeecCC-CCeEEEEEecCCeEEeccccccCccC----CCCCCcCcEEEEEeCCCCceEEEe
Q 012917          384 IHAPRKGIIEVWQMRT-GPRLLTIQCAKGSKILQPTYRFGSSM----ASSPYVPLEVFLLNGDSGQLSVLN  449 (453)
Q Consensus       384 IyaprRg~lEVW~~~~-G~RV~a~~v~~~~~Ll~~~~~~~g~~----~~~~~~~~~~~lld~~~g~l~~i~  449 (453)
                      +.+-+ |..+||.+.. +.++..+..+.+..  ..-..+.+..    .++.-.+.+++.+|.++|+++.+.
T Consensus       309 ~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~--~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~  376 (662)
T 3azo_A          309 VVHGK-GAAVLGILDPESGELVDAAGPWTEW--AATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIG  376 (662)
T ss_dssp             EEEBS-SSCEEEEEETTTTEEEECCSSCCEE--EEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred             EEEEc-CccEEEEEECCCCcEEEecCCCCeE--EEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEee
Confidence            44445 8899994432 33455544333211  1000111100    022345678999999889888774

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=91.31  E-value=0.63  Score=48.61  Aligned_cols=87  Identities=8%  Similarity=-0.091  Sum_probs=60.2

Q ss_pred             cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCc-eEEEEecccccceeeEEEEEe--cccccccccccCCCCCCc
Q 012917          302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQAL-VVVRLWKGYRDASCVFMEMLV--NKDAATSSAYYAPVKSDY  378 (453)
Q Consensus       302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~-~ivRmWKGyRdAqc~Wi~~~~--~~~~~~~~~~~~~~k~~~  378 (453)
                      .|.-....+.+++.+|++ .+|+....|.|.|+|+.++ ..+..++|+.+    .|....  -.+             +.
T Consensus       261 ~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~----~V~sv~~~~s~-------------~g  322 (524)
T 2j04_B          261 TLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDS----YILSVSTAYSD-------------FE  322 (524)
T ss_dssp             EECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSS----CEEEEEEECCT-------------TS
T ss_pred             EEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccc----cEEEEEEEcCC-------------CC
Confidence            344455678889999876 5677778899999999987 45566888876    343321  111             10


Q ss_pred             cEEEEEEcCCCCeEEEeecCCCCeEEEEE
Q 012917          379 CLCLAIHAPRKGIIEVWQMRTGPRLLTIQ  407 (453)
Q Consensus       379 ~l~LvIyaprRg~lEVW~~~~G~RV~a~~  407 (453)
                      . .+++-+..+|.|.||+++++..+..+.
T Consensus       323 ~-~~laS~S~D~tvklWD~~~~~~~~~~~  350 (524)
T 2j04_B          323 D-TVVSTVAVDGYFYIFNPKDIATTKTTV  350 (524)
T ss_dssp             C-CEEEEEETTSEEEEECGGGHHHHCEEE
T ss_pred             C-eEEEEeccCCeEEEEECCCCCcccccc
Confidence            0 256788999999999999887665554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=90.81  E-value=1.2  Score=43.46  Aligned_cols=77  Identities=17%  Similarity=0.152  Sum_probs=53.0

Q ss_pred             EEECCCCCEEEEEcC-----------CCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEE
Q 012917          313 LTLSPSGSLAAITDS-----------LGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC  381 (453)
Q Consensus       313 i~lsP~~~laa~tDs-----------lGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~  381 (453)
                      ++++|+++.+-++..           -++|.+||+.++.+++-+++-.   ..-|.+. . +              .. +
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~---p~~ia~s-p-d--------------g~-~  318 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD---ALSMTID-Q-Q--------------RN-L  318 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT---CCEEEEE-T-T--------------TT-E
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC---eeEEEEC-C-C--------------CC-E
Confidence            678998766655532           3589999999999999998776   2223221 1 1              11 3


Q ss_pred             EEEEcCCCCeEEEeecCCC--CeEEEE-EecCC
Q 012917          382 LAIHAPRKGIIEVWQMRTG--PRLLTI-QCAKG  411 (453)
Q Consensus       382 LvIyaprRg~lEVW~~~~G--~RV~a~-~v~~~  411 (453)
                      |  |+..++.|-||++++|  +.+..+ .++++
T Consensus       319 l--~v~n~~~v~v~D~~t~~l~~~~~i~~~G~~  349 (361)
T 2oiz_A          319 M--LTLDGGNVNVYDISQPEPKLLRTIEGAAEA  349 (361)
T ss_dssp             E--EEECSSCEEEEECSSSSCEEEEEETTSCSS
T ss_pred             E--EEeCCCeEEEEECCCCcceeeEEeccCCCC
Confidence            3  3333499999999999  888886 55554

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=90.77  E-value=7.9  Score=36.51  Aligned_cols=83  Identities=16%  Similarity=0.197  Sum_probs=49.7

Q ss_pred             eeeEEEECC-CCCEEEEEc--CCCcEEEEEcCCceEEEEeccccc------ceeeEEEEEecccccccccccCCCCCCcc
Q 012917          309 KGERLTLSP-SGSLAAITD--SLGRILLLDTQALVVVRLWKGYRD------ASCVFMEMLVNKDAATSSAYYAPVKSDYC  379 (453)
Q Consensus       309 ~~~~i~lsP-~~~laa~tD--slGRV~LiD~~~~~ivRmWKGyRd------Aqc~Wi~~~~~~~~~~~~~~~~~~k~~~~  379 (453)
                      .-..|+++| +|++.+ +|  .-+||.++| ..|..++.+.+.-+      +++.+..-..-.+          .  .. 
T Consensus       144 ~P~~ia~~~~~g~lyv-~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~----------~--~g-  208 (329)
T 3fvz_A          144 QPTDVAVEPSTGAVFV-SDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVP----------H--LD-  208 (329)
T ss_dssp             SEEEEEECTTTCCEEE-EECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEET----------T--TT-
T ss_pred             CCcEEEEeCCCCeEEE-EeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEEC----------C--CC-
Confidence            456899999 666554 45  479999999 67888887753322      2333322111110          0  01 


Q ss_pred             EEEEEEcCCCCeEEEeecCCCCeEEEEE
Q 012917          380 LCLAIHAPRKGIIEVWQMRTGPRLLTIQ  407 (453)
Q Consensus       380 l~LvIyaprRg~lEVW~~~~G~RV~a~~  407 (453)
                       .|.|=....+.|.+|+..+|..+..+.
T Consensus       209 -~l~v~d~~~~~I~~~~~~~G~~~~~~~  235 (329)
T 3fvz_A          209 -QLCVADRENGRIQCFKTDTKEFVREIK  235 (329)
T ss_dssp             -EEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             -EEEEEECCCCEEEEEECCCCcEEEEEe
Confidence             244555566788888887776666553

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=90.59  E-value=2.2  Score=43.55  Aligned_cols=81  Identities=16%  Similarity=0.132  Sum_probs=57.0

Q ss_pred             EECCCCCEEEEEcC-----CCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEE-EEcC
Q 012917          314 TLSPSGSLAAITDS-----LGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLA-IHAP  387 (453)
Q Consensus       314 ~lsP~~~laa~tDs-----lGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~Lv-Iyap  387 (453)
                      ...|+++++-++|.     .|+|.+||+.++.+++..+.=+..  . +-+.  .+             ...+|.. -|.+
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~-va~s--pD-------------G~~lyVan~~~~  100 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--N-PVVA--DD-------------GSFIAHASTVFS  100 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--E-EEEC--TT-------------SSCEEEEEEEEE
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--c-EEEC--CC-------------CCEEEEEccccc
Confidence            45688988888887     589999999999999999854444  2 3221  11             1233332 1333


Q ss_pred             ------CCCeEEEeecCCCCeEEEEEecCCe
Q 012917          388 ------RKGIIEVWQMRTGPRLLTIQCAKGS  412 (453)
Q Consensus       388 ------rRg~lEVW~~~~G~RV~a~~v~~~~  412 (453)
                            +.+.|.|||+.++.-+..+.++.|.
T Consensus       101 r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~  131 (386)
T 3sjl_D          101 RIARGERTDYVEVFDPVTLLPTADIELPDAP  131 (386)
T ss_dssp             ETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred             ccccCCCCCEEEEEECCCCeEEEEEECCCcc
Confidence                  2468999999999999999987643

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=90.54  E-value=6.1  Score=37.56  Aligned_cols=120  Identities=8%  Similarity=0.024  Sum_probs=67.8

Q ss_pred             CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccc----eeeEEEEEecccccccccccCCCCCCccEEEE
Q 012917          308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA----SCVFMEMLVNKDAATSSAYYAPVKSDYCLCLA  383 (453)
Q Consensus       308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdA----qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~Lv  383 (453)
                      .....|+++|+|++.++.-..|+|.++|+.++.+++.++.-+.+    +-.-+.+  .               ...+|  
T Consensus        84 ~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~---------------~~~ly--  144 (328)
T 3dsm_A           84 TSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y---------------GKYVY--  144 (328)
T ss_dssp             SSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E---------------TTEEE--
T ss_pred             CCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E---------------CCEEE--
Confidence            45678899999965444426799999999999999876532210    1001111  0               11223  


Q ss_pred             EEcC-CCCeEEEeecCCCCeEEEEEecCC--eEEecc-ccccCccCC---CCCCc--CcEEEEEeCCCCceE
Q 012917          384 IHAP-RKGIIEVWQMRTGPRLLTIQCAKG--SKILQP-TYRFGSSMA---SSPYV--PLEVFLLNGDSGQLS  446 (453)
Q Consensus       384 Iyap-rRg~lEVW~~~~G~RV~a~~v~~~--~~Ll~~-~~~~~g~~~---~~~~~--~~~~~lld~~~g~l~  446 (453)
                      +-.. ..+.|-++++.++..+..+.++..  +..+.+ +.-+.++..   ..+|.  ...++.||+.++++.
T Consensus       145 v~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~  216 (328)
T 3dsm_A          145 VNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVE  216 (328)
T ss_dssp             EEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE
T ss_pred             EEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEE
Confidence            2233 467899999999888887776532  111111 111111100   01111  267888888878765

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=90.39  E-value=2.4  Score=44.07  Aligned_cols=40  Identities=20%  Similarity=0.071  Sum_probs=31.4

Q ss_pred             CeeeEEEECCCCCEEEEEc---------------------------------CCCcEEEEEcCCceEEEEecc
Q 012917          308 RKGERLTLSPSGSLAAITD---------------------------------SLGRILLLDTQALVVVRLWKG  347 (453)
Q Consensus       308 R~~~~i~lsP~~~laa~tD---------------------------------slGRV~LiD~~~~~ivRmWKG  347 (453)
                      .....++.||+|+++|.+.                                 ..++|.++|+.++...++..+
T Consensus       181 ~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~  253 (706)
T 2z3z_A          181 GIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG  253 (706)
T ss_dssp             TCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC
T ss_pred             CCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC
Confidence            3456788999998877763                                 457899999999998877644

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=90.17  E-value=1.9  Score=44.85  Aligned_cols=42  Identities=12%  Similarity=0.100  Sum_probs=32.7

Q ss_pred             CeeeEEEECCCCCEEEEEcCCCcEEEEEcCC-----ceEEEEeccccc
Q 012917          308 RKGERLTLSPSGSLAAITDSLGRILLLDTQA-----LVVVRLWKGYRD  350 (453)
Q Consensus       308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~-----~~ivRmWKGyRd  350 (453)
                      .....++.||+|+++|.+. .+.|.++|+.+     +...++..+-..
T Consensus       121 ~~~~~~~~SpdG~~la~~~-~~~i~v~~~~~~~~~~g~~~~~~~~~~~  167 (706)
T 2z3z_A          121 EETASLDFSPVGDRVAYVR-NHNLYIARGGKLGEGMSRAIAVTIDGTE  167 (706)
T ss_dssp             TCCTTCEECTTSSEEEEEE-TTEEEEEECBCTTSCCCCCEESCSCCBT
T ss_pred             ccccCCcCCCCCCEEEEEE-CCeEEEEecCcccccCCCcEEeccCCCC
Confidence            3456688999998877763 38999999999     988887665443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=89.21  E-value=0.21  Score=52.16  Aligned_cols=40  Identities=10%  Similarity=0.083  Sum_probs=34.2

Q ss_pred             eeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEeccccc
Q 012917          310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD  350 (453)
Q Consensus       310 ~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRd  350 (453)
                      ..+++.+|+|++++. +..|.|.++|+.++...++..+...
T Consensus        19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~   58 (723)
T 1xfd_A           19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKI   58 (723)
T ss_dssp             CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTT
T ss_pred             ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccc
Confidence            567788999998765 7789999999999999999988764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=88.87  E-value=1.1  Score=50.01  Aligned_cols=46  Identities=9%  Similarity=0.083  Sum_probs=39.5

Q ss_pred             CCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEeccccc
Q 012917          305 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD  350 (453)
Q Consensus       305 D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRd  350 (453)
                      ........++.||+|+++|.+...++|.++|+.++.+.++.+++..
T Consensus       376 ~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~  421 (1045)
T 1k32_A          376 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA  421 (1045)
T ss_dssp             CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS
T ss_pred             CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCC
Confidence            3445678899999999999998999999999999999999877544

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=88.86  E-value=4  Score=38.25  Aligned_cols=41  Identities=12%  Similarity=0.125  Sum_probs=29.3

Q ss_pred             CCCeeeEEEECC-CCC-EEEEEcCC-----CcEEEEEcCCceEEEEec
Q 012917          306 HPRKGERLTLSP-SGS-LAAITDSL-----GRILLLDTQALVVVRLWK  346 (453)
Q Consensus       306 ~~R~~~~i~lsP-~~~-laa~tDsl-----GRV~LiD~~~~~ivRmWK  346 (453)
                      ..+....+..+| +++ ++.+++.-     .+|.++|+..+.+.++..
T Consensus       186 ~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~  233 (396)
T 3c5m_A          186 DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE  233 (396)
T ss_dssp             ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC
T ss_pred             CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec
Confidence            445667889999 776 55555432     589999998887666655

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=88.64  E-value=2.6  Score=43.86  Aligned_cols=37  Identities=11%  Similarity=0.038  Sum_probs=30.6

Q ss_pred             eeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecc
Q 012917          310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKG  347 (453)
Q Consensus       310 ~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKG  347 (453)
                      ...++.||+|+++|.+.. +.|.++|+.++...++-.+
T Consensus       116 ~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~  152 (723)
T 1xfd_A          116 LQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVST  152 (723)
T ss_dssp             CSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred             ccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecC
Confidence            567889999976666544 8999999999999998775

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=88.58  E-value=9.2  Score=35.86  Aligned_cols=39  Identities=3%  Similarity=-0.107  Sum_probs=31.9

Q ss_pred             eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEeccccc
Q 012917          309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD  350 (453)
Q Consensus       309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRd  350 (453)
                      +..++.++|+|++.+.  .-++|..+|. +|.++.-++.-++
T Consensus        38 ~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~   76 (276)
T 3no2_A           38 ECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAPAG   76 (276)
T ss_dssp             CCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCTT
T ss_pred             CCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCC
Confidence            4578899999998883  3578999999 8999999987543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=88.38  E-value=3.1  Score=42.88  Aligned_cols=44  Identities=20%  Similarity=0.033  Sum_probs=32.0

Q ss_pred             CCCCeeeEEEECCCCCEEEEEc--C------CCcEEEEEcC-Cc---eEEEEeccc
Q 012917          305 DHPRKGERLTLSPSGSLAAITD--S------LGRILLLDTQ-AL---VVVRLWKGY  348 (453)
Q Consensus       305 D~~R~~~~i~lsP~~~laa~tD--s------lGRV~LiD~~-~~---~ivRmWKGy  348 (453)
                      +.......+..||||+++|.+.  .      ..+|.++|+. +|   ...++..+.
T Consensus       185 ~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~  240 (662)
T 3azo_A          185 DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP  240 (662)
T ss_dssp             SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred             cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC
Confidence            3345667789999998877643  2      2489999999 67   777777654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=88.38  E-value=12  Score=35.20  Aligned_cols=39  Identities=13%  Similarity=0.170  Sum_probs=31.5

Q ss_pred             CeeeEEEECCCCCEEEEEcCC------------------------CcEEEEEcCCceEEEEec
Q 012917          308 RKGERLTLSPSGSLAAITDSL------------------------GRILLLDTQALVVVRLWK  346 (453)
Q Consensus       308 R~~~~i~lsP~~~laa~tDsl------------------------GRV~LiD~~~~~ivRmWK  346 (453)
                      .....|+++|+|++.++....                        |+|+++|..++.+++.|.
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~   86 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG   86 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC
Confidence            457889999999988654333                        479999999999998775

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=88.16  E-value=1.4  Score=44.86  Aligned_cols=68  Identities=18%  Similarity=0.101  Sum_probs=47.4

Q ss_pred             EEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCe
Q 012917          312 RLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGI  391 (453)
Q Consensus       312 ~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~  391 (453)
                      .+..+.++.++|+....|.|-|+|+.+|..++..+|+.+.-+.-+.. .+ +              ..  +++-+-.+|.
T Consensus       288 ~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vaf-SP-D--------------G~--~LaSGS~D~T  349 (356)
T 2w18_A          288 FLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKW-SG-T--------------DS--HLLAGQKDGN  349 (356)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEE-CS-S--------------SS--EEEEECTTSC
T ss_pred             eEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEE-CC-C--------------CC--EEEEEECCCc
Confidence            34445557788988888999999999999999999998743222211 11 1              11  3457889999


Q ss_pred             EEEeec
Q 012917          392 IEVWQM  397 (453)
Q Consensus       392 lEVW~~  397 (453)
                      |.||++
T Consensus       350 IklWd~  355 (356)
T 2w18_A          350 IFVYHY  355 (356)
T ss_dssp             EEEEEE
T ss_pred             EEEecC
Confidence            999985

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=88.13  E-value=16  Score=33.71  Aligned_cols=44  Identities=16%  Similarity=0.202  Sum_probs=35.7

Q ss_pred             cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEe
Q 012917          302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLW  345 (453)
Q Consensus       302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmW  345 (453)
                      .+.+.....+.++.+|+|++.++.-..|+|.++|..++.+.++.
T Consensus        39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~   82 (333)
T 2dg1_A           39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF   82 (333)
T ss_dssp             EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred             EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence            46666667789999999997776656789999999999887765

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=88.01  E-value=5.6  Score=37.34  Aligned_cols=116  Identities=11%  Similarity=-0.048  Sum_probs=64.0

Q ss_pred             eeeEEEECCCCCEEEEE-cCCCcEEEEEcCCceEEEEeccccc--ceeeEEEEEecccccccccccCCCCCCccEEEEEE
Q 012917          309 KGERLTLSPSGSLAAIT-DSLGRILLLDTQALVVVRLWKGYRD--ASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH  385 (453)
Q Consensus       309 ~~~~i~lsP~~~laa~t-DslGRV~LiD~~~~~ivRmWKGyRd--Aqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIy  385 (453)
                      +..++...|+|+++++. +.-+||+.+|. .|.+++-|+--.+  .+..+...          ..  +. .+.. +||. 
T Consensus        78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~----------v~--~~-~~G~-~lv~-  141 (276)
T 3no2_A           78 EMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQ----------IN--KN-KKGN-YLVP-  141 (276)
T ss_dssp             EEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSC----------CE--EC-TTSC-EEEE-
T ss_pred             cccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccC----------ce--EC-CCCC-EEEE-
Confidence            45678899999887774 43899999996 7888877752111  00000000          00  00 0111 3333 


Q ss_pred             cCCCCeEEEeecCCCCeEEEEEecCC---eEEeccccccCccCCCCCCcCcEEEEEeCCCCceE
Q 012917          386 APRKGIIEVWQMRTGPRLLTIQCAKG---SKILQPTYRFGSSMASSPYVPLEVFLLNGDSGQLS  446 (453)
Q Consensus       386 aprRg~lEVW~~~~G~RV~a~~v~~~---~~Ll~~~~~~~g~~~~~~~~~~~~~lld~~~g~l~  446 (453)
                      .-..|.|-+|+.+ |+.+-.+..+..   .-.+..+..+..     .....+++.||+++|++.
T Consensus       142 ~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~-----~~~~~~v~~~d~~tG~~~  199 (276)
T 3no2_A          142 LFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVA-----CGDAHCFVQLNLESNRIV  199 (276)
T ss_dssp             ETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEE-----CBTTSEEEEECTTTCCEE
T ss_pred             ecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEE-----eCCCCeEEEEeCcCCcEE
Confidence            3357888899987 998888876421   111111111111     122357888888778764

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=87.03  E-value=7.1  Score=36.15  Aligned_cols=40  Identities=18%  Similarity=0.287  Sum_probs=30.2

Q ss_pred             eeeEEEECCCCCEEEEE-cC----CCcEEEEEcCCceEEEEeccc
Q 012917          309 KGERLTLSPSGSLAAIT-DS----LGRILLLDTQALVVVRLWKGY  348 (453)
Q Consensus       309 ~~~~i~lsP~~~laa~t-Ds----lGRV~LiD~~~~~ivRmWKGy  348 (453)
                      ....+..||+|+++|.+ +.    -.+|.++|+.++...++..+-
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~  104 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK  104 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC
Confidence            45678999999877664 32    235999999999988887653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=86.97  E-value=4.9  Score=42.73  Aligned_cols=49  Identities=18%  Similarity=0.264  Sum_probs=35.6

Q ss_pred             CeeeEEEECCCCCEEEE-EcCCC----cEEEEEcCCceEEEE-ecccccceeeEE
Q 012917          308 RKGERLTLSPSGSLAAI-TDSLG----RILLLDTQALVVVRL-WKGYRDASCVFM  356 (453)
Q Consensus       308 R~~~~i~lsP~~~laa~-tDslG----RV~LiD~~~~~ivRm-WKGyRdAqc~Wi  356 (453)
                      .....+++||||+++|. .|.-|    .|.++|+.+|..++. .++.+.....|.
T Consensus       129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws  183 (693)
T 3iuj_A          129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL  183 (693)
T ss_dssp             CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE
T ss_pred             EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe
Confidence            45677899999987776 56666    489999999998763 444444455564

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=86.75  E-value=1.6  Score=45.59  Aligned_cols=84  Identities=7%  Similarity=0.014  Sum_probs=58.1

Q ss_pred             ccCCCCeeeEE--EECCCC-CEEEEEcCCCcEEEEEcCCceEEEEecccc-cc---eeeEEEEEecccccccccccCCCC
Q 012917          303 LKDHPRKGERL--TLSPSG-SLAAITDSLGRILLLDTQALVVVRLWKGYR-DA---SCVFMEMLVNKDAATSSAYYAPVK  375 (453)
Q Consensus       303 l~D~~R~~~~i--~lsP~~-~laa~tDslGRV~LiD~~~~~ivRmWKGyR-dA---qc~Wi~~~~~~~~~~~~~~~~~~k  375 (453)
                      +.-+...+.+|  .-+|+| +++|++...|.|-|+|+.++..++...|+- +.   .++|-.                  
T Consensus       304 ~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp------------------  365 (524)
T 2j04_B          304 DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP------------------  365 (524)
T ss_dssp             EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET------------------
T ss_pred             eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC------------------
Confidence            44455667788  457888 899999999999999999988877777653 21   233321                  


Q ss_pred             CCccEEEEEEcCCCCeEEEeecCCCCeEEEEE
Q 012917          376 SDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQ  407 (453)
Q Consensus       376 ~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~  407 (453)
                       +..  .++-+-..+.|.+|+++++..+.++.
T Consensus       366 -~~~--~l~s~~~d~tv~lwd~~~~~~~~~l~  394 (524)
T 2j04_B          366 -QIY--SYIYSDGASSLRAVPSRAAFAVHPLV  394 (524)
T ss_dssp             -TTT--EEEEECSSSEEEEEETTCTTCCEEEE
T ss_pred             -CcC--eEEEeCCCCcEEEEECcccccceeee
Confidence             011  23456678899999999988655544

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=86.73  E-value=5.7  Score=41.45  Aligned_cols=77  Identities=10%  Similarity=0.066  Sum_probs=47.2

Q ss_pred             eeEEEECCCCCEEEEEcCCC---------------------------------cEEEEEcCC-ceEEEEeccc-cc---c
Q 012917          310 GERLTLSPSGSLAAITDSLG---------------------------------RILLLDTQA-LVVVRLWKGY-RD---A  351 (453)
Q Consensus       310 ~~~i~lsP~~~laa~tDslG---------------------------------RV~LiD~~~-~~ivRmWKGy-Rd---A  351 (453)
                      ...+..||||+++|.+...+                                 +|.++|+.+ +...++-.+. .+   .
T Consensus       211 ~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~  290 (741)
T 2ecf_A          211 HTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLA  290 (741)
T ss_dssp             CCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEE
T ss_pred             ccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEE
Confidence            35789999998777653222                                 889999999 8887776541 11   2


Q ss_pred             eeeEEEEEecccccccccccCCCCCCccEEEEEEc----CCCCeEEEeecCCCCeEEEEE
Q 012917          352 SCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA----PRKGIIEVWQMRTGPRLLTIQ  407 (453)
Q Consensus       352 qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya----prRg~lEVW~~~~G~RV~a~~  407 (453)
                      .+.| .   ++              +   +|++-.    ..++.|.+|++.+|.....+.
T Consensus       291 ~~~~-p---Dg--------------~---~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~  329 (741)
T 2ecf_A          291 RVNW-R---DP--------------Q---HLSFQRQSRDQKKLDLVEVTLASNQQRVLAH  329 (741)
T ss_dssp             EEEE-E---ET--------------T---EEEEEEEETTSSEEEEEEEETTTCCEEEEEE
T ss_pred             EEEe-C---CC--------------C---EEEEEEecccCCeEEEEEEECCCCceEEEEE
Confidence            2333 2   11              1   233222    235678889988887655544

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=86.58  E-value=4.1  Score=43.01  Aligned_cols=35  Identities=11%  Similarity=-0.008  Sum_probs=28.0

Q ss_pred             CeeeEEEECCCCCEEEE-EcCCC----cEEEEEcCCceEE
Q 012917          308 RKGERLTLSPSGSLAAI-TDSLG----RILLLDTQALVVV  342 (453)
Q Consensus       308 R~~~~i~lsP~~~laa~-tDslG----RV~LiD~~~~~iv  342 (453)
                      .....+..||+|+++|. .|.-|    .|.++|+.+|..+
T Consensus       121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~  160 (695)
T 2bkl_A          121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWS  160 (695)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBC
T ss_pred             EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCc
Confidence            35778999999988776 45444    6999999999876

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=86.21  E-value=15  Score=33.54  Aligned_cols=46  Identities=13%  Similarity=-0.066  Sum_probs=36.0

Q ss_pred             CccccCCCCeeeEEEECCCCC-EEEEEcCCCcEEEEEcCCceEEEEecc
Q 012917          300 LTCLKDHPRKGERLTLSPSGS-LAAITDSLGRILLLDTQALVVVRLWKG  347 (453)
Q Consensus       300 l~~l~D~~R~~~~i~lsP~~~-laa~tDslGRV~LiD~~~~~ivRmWKG  347 (453)
                      +..+.+...-.+.++.+|+|+ +.++.-..|+|..+|..++  ++.|+.
T Consensus        20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~   66 (296)
T 3e5z_A           20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMH   66 (296)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEES
T ss_pred             EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEEC
Confidence            344667778899999999998 6666556789999999988  666654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=85.50  E-value=17  Score=38.30  Aligned_cols=85  Identities=15%  Similarity=-0.047  Sum_probs=54.8

Q ss_pred             eeEEEECCCCCEEEEEcCCCcEEEEEcC--CceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917          310 GERLTLSPSGSLAAITDSLGRILLLDTQ--ALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP  387 (453)
Q Consensus       310 ~~~i~lsP~~~laa~tDslGRV~LiD~~--~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap  387 (453)
                      ...+.+||+|+++.+++..|.|.+||+.  ++.+++-.+.-.+..  =+.+  ..      .   +....+.+|..=|. 
T Consensus       199 p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~--~ia~--s~------~---~~pDGk~l~v~n~~-  264 (567)
T 1qks_A          199 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR--SIET--SK------M---EGWEDKYAIAGAYW-  264 (567)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE--EEEE--CC------S---TTCTTTEEEEEEEE-
T ss_pred             ccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc--eeEE--cc------c---cCCCCCEEEEEEcc-
Confidence            4579999999999998889999999996  888776555322211  0111  00      0   00001233444444 


Q ss_pred             CCCeEEEeecCCCCeEEEEEec
Q 012917          388 RKGIIEVWQMRTGPRLLTIQCA  409 (453)
Q Consensus       388 rRg~lEVW~~~~G~RV~a~~v~  409 (453)
                       .+.|-|++..++..+..+.++
T Consensus       265 -~~~v~ViD~~t~~~~~~i~~~  285 (567)
T 1qks_A          265 -PPQYVIMDGETLEPKKIQSTR  285 (567)
T ss_dssp             -TTEEEEEETTTCCEEEEEECC
T ss_pred             -CCeEEEEECCCCcEEEEEecc
Confidence             488899999999888888764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=85.16  E-value=20  Score=33.86  Aligned_cols=81  Identities=12%  Similarity=0.111  Sum_probs=53.6

Q ss_pred             eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCC
Q 012917          309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPR  388 (453)
Q Consensus       309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyapr  388 (453)
                      ..+.|+++ ++++.+++..-|+|.++|..++.+++.+++-.+  ..-+.+..+                .  .|.+-...
T Consensus        45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~--p~~i~~~~~----------------g--~lyv~~~~  103 (328)
T 3dsm_A           45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTS--PRYIHFLSD----------------E--KAYVTQIW  103 (328)
T ss_dssp             CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSS--EEEEEEEET----------------T--EEEEEEBS
T ss_pred             cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCC--CcEEEEeCC----------------C--eEEEEECC
Confidence            34567775 455666666679999999999999988764322  222222111                1  23344445


Q ss_pred             CCeEEEeecCCCCeEEEEEecC
Q 012917          389 KGIIEVWQMRTGPRLLTIQCAK  410 (453)
Q Consensus       389 Rg~lEVW~~~~G~RV~a~~v~~  410 (453)
                      .+.|-+|+..++..+..+.++.
T Consensus       104 ~~~v~~iD~~t~~~~~~i~~g~  125 (328)
T 3dsm_A          104 DYRIFIINPKTYEITGYIECPD  125 (328)
T ss_dssp             CSEEEEEETTTTEEEEEEECTT
T ss_pred             CCeEEEEECCCCeEEEEEEcCC
Confidence            7899999999998888888766

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=84.38  E-value=13  Score=33.82  Aligned_cols=81  Identities=14%  Similarity=0.057  Sum_probs=47.3

Q ss_pred             CeeeEEEECCCCCEEEEEcC-CCcEEEEEcC-CceE---EEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917          308 RKGERLTLSPSGSLAAITDS-LGRILLLDTQ-ALVV---VRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (453)
Q Consensus       308 R~~~~i~lsP~~~laa~tDs-lGRV~LiD~~-~~~i---vRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (453)
                      .....|+++|+|++. ++|+ -++|.++|+. .|.+   .+.+ ........-+.+  .              .+..++.
T Consensus       172 ~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~--d--------------~~G~l~v  233 (296)
T 3e5z_A          172 VKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRV--D--------------AGGLIWA  233 (296)
T ss_dssp             SSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEE--B--------------TTSCEEE
T ss_pred             CCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEE--C--------------CCCCEEE
Confidence            445679999999988 7665 5799999997 5655   4444 111100000100  0              0112222


Q ss_pred             EEEcCCCCeEEEeecCCCCeEEEEEecCC
Q 012917          383 AIHAPRKGIIEVWQMRTGPRLLTIQCAKG  411 (453)
Q Consensus       383 vIyaprRg~lEVW~~~~G~RV~a~~v~~~  411 (453)
                      .  .  .+.|-+|+.+ |..+..+..+.+
T Consensus       234 ~--~--~~~v~~~~~~-g~~~~~~~~~~~  257 (296)
T 3e5z_A          234 S--A--GDGVHVLTPD-GDELGRVLTPQT  257 (296)
T ss_dssp             E--E--TTEEEEECTT-SCEEEEEECSSC
T ss_pred             E--c--CCeEEEECCC-CCEEEEEECCCC
Confidence            2  2  6778888886 888777776543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=83.91  E-value=7.9  Score=40.92  Aligned_cols=108  Identities=10%  Similarity=0.213  Sum_probs=65.1

Q ss_pred             ECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEE
Q 012917          315 LSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEV  394 (453)
Q Consensus       315 lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEV  394 (453)
                      .+|.+.++++.-..|+|.+||+.++.+++..+.-...+  .+.+  ..+              .. +|.+ +-+.|.|-+
T Consensus       163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~--~v~~--SpD--------------Gr-~lyv-~~~dg~V~v  222 (567)
T 1qks_A          163 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVH--ISRL--SAS--------------GR-YLFV-IGRDGKVNM  222 (567)
T ss_dssp             CCGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEE--EEEE--CTT--------------SC-EEEE-EETTSEEEE
T ss_pred             cCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCcc--ceEE--CCC--------------CC-EEEE-EcCCCeEEE
Confidence            45666666666778999999999999998775322211  2221  111              11 2222 236899999


Q ss_pred             eecC--CCCeEEEEEecCCeEEeccc------cccCccCCCCCCcCcEEEEEeCCCCce
Q 012917          395 WQMR--TGPRLLTIQCAKGSKILQPT------YRFGSSMASSPYVPLEVFLLNGDSGQL  445 (453)
Q Consensus       395 W~~~--~G~RV~a~~v~~~~~Ll~~~------~~~~g~~~~~~~~~~~~~lld~~~g~l  445 (453)
                      |++.  ++..+..+.++.+-+=+.-+      -+..=   ...+.+.++.+||..++++
T Consensus       223 iD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~---v~n~~~~~v~ViD~~t~~~  278 (567)
T 1qks_A          223 IDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAI---AGAYWPPQYVIMDGETLEP  278 (567)
T ss_dssp             EETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEE---EEEEETTEEEEEETTTCCE
T ss_pred             EECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEE---EEEccCCeEEEEECCCCcE
Confidence            9995  88888888877654322111      00000   1125578888888766554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=83.83  E-value=12  Score=39.57  Aligned_cols=36  Identities=14%  Similarity=0.105  Sum_probs=29.3

Q ss_pred             eeeEEEECCCCCEEEEE-cCCC----cEEEEEcCCceEEEE
Q 012917          309 KGERLTLSPSGSLAAIT-DSLG----RILLLDTQALVVVRL  344 (453)
Q Consensus       309 ~~~~i~lsP~~~laa~t-DslG----RV~LiD~~~~~ivRm  344 (453)
                      ....++.||+|+++|.+ |.-|    .|.++|+.+|..++.
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~  166 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD  166 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc
Confidence            46789999999887764 5555    799999999998874

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=83.79  E-value=23  Score=31.46  Aligned_cols=38  Identities=11%  Similarity=0.059  Sum_probs=30.4

Q ss_pred             CCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEE
Q 012917          306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRL  344 (453)
Q Consensus       306 ~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRm  344 (453)
                      .......|+.+|+|++.+++..-|+|..+|.. +.+.+.
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~   50 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEY   50 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEE
T ss_pred             cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEe
Confidence            33567889999999988887778999999998 665543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=83.49  E-value=1.4  Score=46.18  Aligned_cols=38  Identities=5%  Similarity=-0.076  Sum_probs=31.7

Q ss_pred             EEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEeccccc
Q 012917          312 RLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD  350 (453)
Q Consensus       312 ~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRd  350 (453)
                      .+.-+|+|++++.+ ..|.|.++|+.++...++..+...
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~   57 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTM   57 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHH
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccc
Confidence            56788999877655 579999999999999999887654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=83.22  E-value=18  Score=34.81  Aligned_cols=118  Identities=11%  Similarity=-0.018  Sum_probs=76.3

Q ss_pred             CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917          308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP  387 (453)
Q Consensus       308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap  387 (453)
                      -.++.++++ ++++.+++-.-++|.++|..++.+++..+ |- ..-+|--....                ..||  +-- 
T Consensus        66 ~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~v~~~i~-~g-~~~g~glt~Dg----------------~~l~--vs~-  123 (266)
T 2iwa_A           66 YFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLSNIKNFT-HQ-MKDGWGLATDG----------------KILY--GSD-  123 (266)
T ss_dssp             CCEEEEEEE-TTEEEEEETTCSEEEEEETTTTEEEEEEE-CC-SSSCCEEEECS----------------SSEE--EEC-
T ss_pred             cceEEEEEe-CCEEEEEEecCCEEEEEECCCCcEEEEEE-CC-CCCeEEEEECC----------------CEEE--EEC-
Confidence            455667776 35788888888999999999999999875 11 22345433211                1223  333 


Q ss_pred             CCCeEEEeecCCCCeEEEEEecCCeEEecc-cc-ccCccCC--CCCCcCcEEEEEeCCCCceE-EE
Q 012917          388 RKGIIEVWQMRTGPRLLTIQCAKGSKILQP-TY-RFGSSMA--SSPYVPLEVFLLNGDSGQLS-VL  448 (453)
Q Consensus       388 rRg~lEVW~~~~G~RV~a~~v~~~~~Ll~~-~~-~~~g~~~--~~~~~~~~~~lld~~~g~l~-~i  448 (453)
                      -.+.|-+.+..+...+..+.|+.+.+-+.. +. -+.. +.  ..-+..+++..||+.+|++. .|
T Consensus       124 gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~d-g~lyvn~~~~~~V~vID~~tg~V~~~I  188 (266)
T 2iwa_A          124 GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYIN-GEVWANIWQTDCIARISAKDGTLLGWI  188 (266)
T ss_dssp             SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEET-TEEEEEETTSSEEEEEETTTCCEEEEE
T ss_pred             CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEEC-CEEEEecCCCCeEEEEECCCCcEEEEE
Confidence            478999999999999999999876443211 10 0000 00  11255789999999999763 44

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=83.21  E-value=4.9  Score=37.63  Aligned_cols=80  Identities=13%  Similarity=0.025  Sum_probs=50.8

Q ss_pred             eeEEEECCCCCEEEEE-cC--CCcEEEEEcCCceEEEEecccccce--eeEEEEEecccccccccccCCCCCCccEEEEE
Q 012917          310 GERLTLSPSGSLAAIT-DS--LGRILLLDTQALVVVRLWKGYRDAS--CVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI  384 (453)
Q Consensus       310 ~~~i~lsP~~~laa~t-Ds--lGRV~LiD~~~~~ivRmWKGyRdAq--c~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI  384 (453)
                      ...+++||+|+++|.+ +.  ..+|.++|+.++...++-.+.....  +.|-                |   +..  .++
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~s----------------p---dg~--~l~   96 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIS----------------T---DER--AFF   96 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEEC----------------T---TSS--EEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceEC----------------C---CCC--EEE
Confidence            3456899999886664 43  3479999999999877765543211  2221                0   111  234


Q ss_pred             EcCCCCeEEEeecCCCCeEEEEEecC
Q 012917          385 HAPRKGIIEVWQMRTGPRLLTIQCAK  410 (453)
Q Consensus       385 yaprRg~lEVW~~~~G~RV~a~~v~~  410 (453)
                      |.-.++.|-+|++.+|........+.
T Consensus        97 ~~~~~~~l~~~d~~~~~~~~~~~~~~  122 (396)
T 3c5m_A           97 YVKNELNLMKVDLETLEEQVIYTVDE  122 (396)
T ss_dssp             EEETTTEEEEEETTTCCEEEEEECCT
T ss_pred             EEEcCCcEEEEECCCCCcEEEEeccc
Confidence            55566789999999887665555443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=82.79  E-value=5.3  Score=40.62  Aligned_cols=80  Identities=11%  Similarity=0.035  Sum_probs=53.0

Q ss_pred             EEEECCCCCEEEEEcC----------CCcEEEEEcCCceEEEEec-c--ccccee----eEEEEEecccccccccccCCC
Q 012917          312 RLTLSPSGSLAAITDS----------LGRILLLDTQALVVVRLWK-G--YRDASC----VFMEMLVNKDAATSSAYYAPV  374 (453)
Q Consensus       312 ~i~lsP~~~laa~tDs----------lGRV~LiD~~~~~ivRmWK-G--yRdAqc----~Wi~~~~~~~~~~~~~~~~~~  374 (453)
                      .|.+||+|+++.++++          -+.|.+||+.++.+++-+. |  -| ++.    .-+.+             .  
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r-~~~g~~P~~~a~-------------s--  145 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR-FLVGTYPWMTSL-------------T--  145 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC-CCBSCCGGGEEE-------------C--
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccc-cccCCCCceEEE-------------c--
Confidence            4999999998888774          3569999999999998763 1  11 110    00110             0  


Q ss_pred             CCCccEEEEEEcC-CCCeEEEeecCCCCeEEEEEec
Q 012917          375 KSDYCLCLAIHAP-RKGIIEVWQMRTGPRLLTIQCA  409 (453)
Q Consensus       375 k~~~~l~LvIyap-rRg~lEVW~~~~G~RV~a~~v~  409 (453)
                       .+.. +|.+..- ..+.|-|+++.++..+..+.++
T Consensus       146 -pDGk-~lyVan~~~~~~VsVID~~t~~vv~tI~v~  179 (386)
T 3sjl_D          146 -PDGK-TLLFYQFSPAPAVGVVDLEGKAFKRMLDVP  179 (386)
T ss_dssp             -TTSS-EEEEEECSSSCEEEEEETTTTEEEEEEECC
T ss_pred             -CCCC-EEEEEEcCCCCeEEEEECCCCcEEEEEECC
Confidence             0111 3444443 3689999999999999998764

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=82.06  E-value=5.1  Score=38.30  Aligned_cols=35  Identities=11%  Similarity=0.040  Sum_probs=26.9

Q ss_pred             eeeEEE-ECCCCCEEEEEcCCC------cEEEEEcC-CceEEE
Q 012917          309 KGERLT-LSPSGSLAAITDSLG------RILLLDTQ-ALVVVR  343 (453)
Q Consensus       309 ~~~~i~-lsP~~~laa~tDslG------RV~LiD~~-~~~ivR  343 (453)
                      ....++ +||+|+++++++..+      +|.++|+. +|.+.+
T Consensus       255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~  297 (365)
T 1jof_A          255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEK  297 (365)
T ss_dssp             EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEE
T ss_pred             ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEE
Confidence            567899 999999887775433      89999986 676554

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=81.70  E-value=9.1  Score=37.75  Aligned_cols=86  Identities=8%  Similarity=0.031  Sum_probs=55.2

Q ss_pred             eEEEECCCCCEEEE-EcC---------CCcEEEEEcCCceEEEEecccc-cceeeEEEEEecccccccccccCCCCCCcc
Q 012917          311 ERLTLSPSGSLAAI-TDS---------LGRILLLDTQALVVVRLWKGYR-DASCVFMEMLVNKDAATSSAYYAPVKSDYC  379 (453)
Q Consensus       311 ~~i~lsP~~~laa~-tDs---------lGRV~LiD~~~~~ivRmWKGyR-dAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~  379 (453)
                      .-+.++|+++.+-+ .++         -++|.+||+.++.+++-++.=. -..++|-    .               +..
T Consensus       270 ~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s----~---------------Dg~  330 (373)
T 2mad_H          270 QQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVA----Q---------------DGG  330 (373)
T ss_pred             EeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEEC----C---------------CCC
Confidence            34778998764444 332         3689999999999999876422 2222221    1               111


Q ss_pred             EEEEEEcCCCCeEEEeecCCCCeEEE-EEecCCeEEe
Q 012917          380 LCLAIHAPRKGIIEVWQMRTGPRLLT-IQCAKGSKIL  415 (453)
Q Consensus       380 l~LvIyaprRg~lEVW~~~~G~RV~a-~~v~~~~~Ll  415 (453)
                      ..|++-.-..+.|-|+++.+++.+.. +.++++-..|
T Consensus       331 ~~l~v~~~~~~~V~ViD~~t~~vv~~i~~vG~~P~~~  367 (373)
T 2mad_H          331 PDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVL  367 (373)
T ss_pred             eEEEEEcCCCCeEEEEECCCCCEEeeecCCCCCCcEE
Confidence            12333333469999999999999998 5777764433

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=81.22  E-value=5.8  Score=41.67  Aligned_cols=37  Identities=19%  Similarity=0.333  Sum_probs=28.8

Q ss_pred             eeeEEEECCCCCEEEEEcC------CCcEEEEEcCCceEEEEec
Q 012917          309 KGERLTLSPSGSLAAITDS------LGRILLLDTQALVVVRLWK  346 (453)
Q Consensus       309 ~~~~i~lsP~~~laa~tDs------lGRV~LiD~~~~~ivRmWK  346 (453)
                      .-..+.++|+| +.+.+..      -|+|+++|..++.+++-|+
T Consensus       139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~  181 (462)
T 2ece_A          139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWE  181 (462)
T ss_dssp             EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECC
T ss_pred             cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEc
Confidence            34567888998 5554333      2899999999999999998

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=80.82  E-value=33  Score=33.35  Aligned_cols=114  Identities=11%  Similarity=-0.007  Sum_probs=77.0

Q ss_pred             eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCC
Q 012917          309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPR  388 (453)
Q Consensus       309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyapr  388 (453)
                      -++-|++.. +++-.++=.-+++.++|..++.+++-.+-  .. -+|=-+...                .  .|++-. .
T Consensus        97 FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~--~~-eGwGLt~Dg----------------~--~L~vSd-G  153 (268)
T 3nok_A           97 FAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRY--SG-EGWGLCYWN----------------G--KLVRSD-G  153 (268)
T ss_dssp             CEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEEC--SS-CCCCEEEET----------------T--EEEEEC-S
T ss_pred             ceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeC--CC-ceeEEecCC----------------C--EEEEEC-C
Confidence            356677664 46666676779999999999999998863  11 144333211                1  244555 4


Q ss_pred             CCeEEEeecCCCCeEEEEEecCCeEEec-------cccccCccCCCCCCcCcEEEEEeCCCCceE-EEe
Q 012917          389 KGIIEVWQMRTGPRLLTIQCAKGSKILQ-------PTYRFGSSMASSPYVPLEVFLLNGDSGQLS-VLN  449 (453)
Q Consensus       389 Rg~lEVW~~~~G~RV~a~~v~~~~~Ll~-------~~~~~~g~~~~~~~~~~~~~lld~~~g~l~-~i~  449 (453)
                      .+.|-++|.+++..+..+.|+.+++-+.       ....+..+    -|..+.+..|||.+|++. .|+
T Consensus       154 s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyan----vw~s~~I~vIDp~TG~V~~~Id  218 (268)
T 3nok_A          154 GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYAN----IWHSSDVLEIDPATGTVVGVID  218 (268)
T ss_dssp             SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEE----ETTCSEEEEECTTTCBEEEEEE
T ss_pred             CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEE----ECCCCeEEEEeCCCCcEEEEEE
Confidence            8899999999999999999987554332       11122211    277889999999999874 443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=80.27  E-value=21  Score=35.15  Aligned_cols=78  Identities=17%  Similarity=0.070  Sum_probs=49.0

Q ss_pred             EECCCCCEEEEEcC--CC---cEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEc--
Q 012917          314 TLSPSGSLAAITDS--LG---RILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA--  386 (453)
Q Consensus       314 ~lsP~~~laa~tDs--lG---RV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya--  386 (453)
                      ..+|+++++-++|.  .+   .|.+||..++.++...+.=....+++-                |.  .+.+|..=..  
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p~i~~s----------------pD--g~~lyv~n~~~~   88 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAA----------------HS--GSEFALASTSFS   88 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCCCeEEC----------------CC--CCEEEEEecccc
Confidence            44577888888885  44   899999999999876653211111111                11  1222322111  


Q ss_pred             -----CCCCeEEEeecCCCCeEEEEEec
Q 012917          387 -----PRKGIIEVWQMRTGPRLLTIQCA  409 (453)
Q Consensus       387 -----prRg~lEVW~~~~G~RV~a~~v~  409 (453)
                           .+.+.|.+|+..++..+..+.++
T Consensus        89 ~~~rg~~~~~v~viD~~t~~~~~~i~~~  116 (373)
T 2mad_H           89 RIAKGKRTDYVEVFDPVTFLPIADIELP  116 (373)
T ss_pred             ccccCCCCCeEEEEECCCCcEEEEEECC
Confidence                 23578999999999988888876

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=80.09  E-value=21  Score=32.11  Aligned_cols=38  Identities=8%  Similarity=0.099  Sum_probs=30.4

Q ss_pred             CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEec
Q 012917          308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWK  346 (453)
Q Consensus       308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWK  346 (453)
                      .....|+++|+|++.++....|+|.++|.. +..++.+.
T Consensus        30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~   67 (286)
T 1q7f_A           30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFG   67 (286)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEEC
T ss_pred             CCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEec
Confidence            446789999999987776677999999987 66667664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	453
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.78
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	98.61
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	98.41
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	98.04
d1tbga_	340	beta1-subunit of the signal-transducing G protein	98.01
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	97.49
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	97.46
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	97.34
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.32
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.27
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	97.03
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	96.96
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	96.95
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	96.92
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	96.77
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	96.54
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	96.52
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	96.46
d1tbga_	340	beta1-subunit of the signal-transducing G protein	96.44
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	96.32
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	96.29
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	96.27
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	96.19
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	96.12
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	96.09
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	96.04
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	96.02
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	95.29
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	95.25
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	94.7
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	94.54
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	94.46
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	94.23
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	94.18
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	94.01
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	93.98
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	93.68
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	93.59
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	93.35
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	93.08
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	93.05
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	92.59
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	92.15
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	89.24
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	87.74
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	86.0
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	81.24

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.78  E-value=3.8e-06  Score=78.04  Aligned_cols=281  Identities=14%  Similarity=0.103  Sum_probs=157.5

Q ss_pred             CeeeeccCcceeeeeecceEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEe-cCCcE
Q 012917           33 PNLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGDL  111 (453)
Q Consensus        33 ~~~~~sp~~~~la~A~~~~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt-e~G~L  111 (453)
                      ..++.+|+|+.||.+.+..+++-...... ..-.+.|     -.+.||++.|-  ||-..+|+|..+|.|++|+ .++..
T Consensus        21 ~~~a~~~~g~~l~~~~~~~v~i~~~~~~~-~~~~~~~-----H~~~v~~~~~s--p~g~~latg~~dg~i~iwd~~~~~~   92 (311)
T d1nr0a1          21 VVLGNTPAGDKIQYCNGTSVYTVPVGSLT-DTEIYTE-----HSHQTTVAKTS--PSGYYCASGDVHGNVRIWDTTQTTH   92 (311)
T ss_dssp             CCCEECTTSSEEEEEETTEEEEEETTCSS-CCEEECC-----CSSCEEEEEEC--TTSSEEEEEETTSEEEEEESSSTTC
T ss_pred             EEEEEcCCCCEEEEEeCCEEEEEECCCCc-eeEEEcC-----CCCCEEEEEEe--CCCCeEeccccCceEeeeeeecccc
Confidence            57899999999999998886653322111 1112222     23569999885  4677899999999999998 44555


Q ss_pred             eeec--ccCccceeEEEEeeccCCCCcCCCCCeEEEEeCCe--EEEEeChhHHHHHHHHHHhccccccCCCCccCCCccc
Q 012917          112 VHRQ--LIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGV--LARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDL  187 (453)
Q Consensus       112 L~sQ--~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~~--i~~idG~~L~~~L~~c~~~~~~~~w~~~~~~~~~~~~  187 (453)
                      ++..  ..|..+|..++....         ...|.+...+.  .+.+                    |+-...+.     
T Consensus        93 ~~~~~~~~~~~~v~~v~~s~d---------~~~l~~~~~~~~~~~~v--------------------~~~~~~~~-----  138 (311)
T d1nr0a1          93 ILKTTIPVFSGPVKDISWDSE---------SKRIAAVGEGRERFGHV--------------------FLFDTGTS-----  138 (311)
T ss_dssp             CEEEEEECSSSCEEEEEECTT---------SCEEEEEECCSSCSEEE--------------------EETTTCCB-----
T ss_pred             ccccccccccCcccccccccc---------ccccccccccccccccc--------------------cccccccc-----
Confidence            5443  458889988875221         22233332111  1111                    10000000     


Q ss_pred             cCccCCccceecccC-CCCceeeEEEeCcCCCCchhhcccccceEEEEeCCCceeEEEEeccCCCcchhhhhhhhhhhHH
Q 012917          188 ENSYERLPHQLWNVS-KYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPAT  266 (453)
Q Consensus       188 ~~~~~~L~ykKW~l~-~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P~la~y~~~e~~~~s~~~a~~S~va~av  266 (453)
                         .       ..+. ..+.+.++++-    |        .+.+.+++.+.+-.+-+|......                
T Consensus       139 ---~-------~~l~~h~~~v~~v~~~----~--------~~~~~l~sgs~d~~i~i~d~~~~~----------------  180 (311)
T d1nr0a1         139 ---N-------GNLTGQARAMNSVDFK----P--------SRPFRIISGSDDNTVAIFEGPPFK----------------  180 (311)
T ss_dssp             ---C-------BCCCCCSSCEEEEEEC----S--------SSSCEEEEEETTSCEEEEETTTBE----------------
T ss_pred             ---c-------cccccccccccccccc----c--------cceeeecccccccccccccccccc----------------
Confidence               0       1111 11234444431    1        122234444444444444222100                


Q ss_pred             HHHHhhhhhccccCCCCCCCCCCCCCccccCCCCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEec
Q 012917          267 FSTISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWK  346 (453)
Q Consensus       267 ~S~~~s~ak~~W~~~~~~~~~e~~p~~~~~a~pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWK  346 (453)
                                                      .+..+.+....+.++..+|++++++++...|.|.|+|..++..++.++
T Consensus       181 --------------------------------~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~  228 (311)
T d1nr0a1         181 --------------------------------FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE  228 (311)
T ss_dssp             --------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECB
T ss_pred             --------------------------------cccccccccccccccccCcccccccccccccccccccccccccccccc
Confidence                                            011233345668899999999999999999999999999999888876


Q ss_pred             ccccc---eeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEecCCeEEeccccccCc
Q 012917          347 GYRDA---SCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGS  423 (453)
Q Consensus       347 GyRdA---qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~~~Ll~~~~~~~g  423 (453)
                      ..+.-   .-++|....-.+             +.. +|+. +-.+|.|.||++++|..+..++.+....     ....+
T Consensus       229 ~~~~~~~~h~~~V~~~~~s~-------------~~~-~l~t-gs~Dg~v~iwd~~t~~~~~~l~~~~~~~-----~~~~~  288 (311)
T d1nr0a1         229 DDSLKNVAHSGSVFGLTWSP-------------DGT-KIAS-ASADKTIKIWNVATLKVEKTIPVGTRIE-----DQQLG  288 (311)
T ss_dssp             CTTSSSCSSSSCEEEEEECT-------------TSS-EEEE-EETTSEEEEEETTTTEEEEEEECCSSGG-----GCEEE
T ss_pred             ccccccccccccccccccCC-------------CCC-EEEE-EeCCCeEEEEECCCCcEEEEEECCCCcc-----ceEEE
Confidence            44321   112332211110             111 3443 6679999999999999888777543210     00001


Q ss_pred             cCCCCCCcCcEEEEEeCCCCceEEEec
Q 012917          424 SMASSPYVPLEVFLLNGDSGQLSVLNR  450 (453)
Q Consensus       424 ~~~~~~~~~~~~~lld~~~g~l~~i~~  450 (453)
                      .    .|.+...+... .||.|+..|+
T Consensus       289 ~----~~~~~~l~s~s-~dG~i~~wd~  310 (311)
T d1nr0a1         289 I----IWTKQALVSIS-ANGFINFVNP  310 (311)
T ss_dssp             E----EECSSCEEEEE-TTCCEEEEET
T ss_pred             E----EecCCEEEEEE-CCCEEEEEeC
Confidence            0    13444555554 4899998886

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.61  E-value=2.2e-05  Score=72.56  Aligned_cols=257  Identities=16%  Similarity=0.164  Sum_probs=147.8

Q ss_pred             CeeeeccCcceeeeeecceEEEEeecCCCCC---ceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEecC-
Q 012917           33 PNLLCALDMHTIALANRYQTVIINWADPEGL---VAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLK-  108 (453)
Q Consensus        33 ~~~~~sp~~~~la~A~~~~~v~~~w~~~~~~---~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~-  108 (453)
                      ..++.+|.|+.||+|.+...++-.|+.....   .....|.    .+..||++.+-|..+-..|+-|-.+|.|++++.. 
T Consensus        21 t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh----~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~   96 (325)
T d1pgua1          21 THLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGH----GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF   96 (325)
T ss_dssp             CCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTT----TTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCC----CCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecC
Confidence            4678899999999999988877777654421   2344443    3466999999988777789999999999999842 


Q ss_pred             CcEeeec--------ccCccceeEEEEeeccCCCCcCCCCCeEEEEeCCe---EEEEeChhHHHHHHHHHHhccccccCC
Q 012917          109 GDLVHRQ--------LIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGV---LARFDGSEIQKMLQRWFQDSNSNFWDQ  177 (453)
Q Consensus       109 G~LL~sQ--------~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~~---i~~idG~~L~~~L~~c~~~~~~~~w~~  177 (453)
                      +..+...        ..|..||..|....         ..+.|.++-.+.   +..++                   |+ 
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~---------~~~~l~~~~~~~~~~~~~~~-------------------~~-  147 (325)
T d1pgua1          97 DKESNSVEVNVKSEFQVLAGPISDISWDF---------EGRRLCVVGEGRDNFGVFIS-------------------WD-  147 (325)
T ss_dssp             EGGGTEEEEEEEEEEECCSSCEEEEEECT---------TSSEEEEEECCSSCSEEEEE-------------------TT-
T ss_pred             CcceeeeecccccccccccCcEEEEEECC---------CCCccceeeccccceEEEEe-------------------ec-
Confidence            3322221        24555666655311         122232222110   00000                   00 


Q ss_pred             CCccCCCccccCccCCccceecccC-CCCceeeEEEeCcCCCCchhhcccccceEEEEeCCCceeEEEEeccCCCcchhh
Q 012917          178 KPKQRDSEDLENSYERLPHQLWNVS-KYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVG  256 (453)
Q Consensus       178 ~~~~~~~~~~~~~~~~L~ykKW~l~-~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P~la~y~~~e~~~~s~~~  256 (453)
                            ..   .       ....+. ....+...++.-            .+.+.++++|.+-.+-+|........    
T Consensus       148 ------~~---~-------~~~~~~~h~~~v~~~~~~~------------~~~~~~~~~~~d~~v~~~d~~~~~~~----  195 (325)
T d1pgua1         148 ------SG---N-------SLGEVSGHSQRINACHLKQ------------SRPMRSMTVGDDGSVVFYQGPPFKFS----  195 (325)
T ss_dssp             ------TC---C-------EEEECCSCSSCEEEEEECS------------SSSCEEEEEETTTEEEEEETTTBEEE----
T ss_pred             ------cc---c-------cceeeeecccccccccccc------------cccceEEEeecccccccccccccccc----
Confidence                  00   0       001111 112344433321            12223566666666655532211000    


Q ss_pred             hhhhhhhhHHHHHHhhhhhccccCCCCCCCCCCCCCccccCCCCccccCCCCeeeEEEECCC-CCEEEEEcCCCcEEEEE
Q 012917          257 AILSKVVPATFSTISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSPS-GSLAAITDSLGRILLLD  335 (453)
Q Consensus       257 a~~S~va~av~S~~~s~ak~~W~~~~~~~~~e~~p~~~~~a~pl~~l~D~~R~~~~i~lsP~-~~laa~tDslGRV~LiD  335 (453)
                                                               .....+......+.+++.+|+ ++++|+....|.|.++|
T Consensus       196 -----------------------------------------~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd  234 (325)
T d1pgua1         196 -----------------------------------------ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD  234 (325)
T ss_dssp             -----------------------------------------EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEE
T ss_pred             -----------------------------------------eecccccCCCCccEEeeeccccceeccccccccceeeee
Confidence                                                     000011222334678999996 68888888889999999


Q ss_pred             cCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEecCC
Q 012917          336 TQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKG  411 (453)
Q Consensus       336 ~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~  411 (453)
                      +.++..++.++|..++-.+-+....-.+              .. + ++-+-.+|.|.||++++|+.+..+.++++
T Consensus       235 ~~~~~~~~~l~~~~~~v~~~~~s~~~~d--------------g~-~-l~s~s~D~~i~iwd~~~~~~~~~~~~~~~  294 (325)
T d1pgua1         235 GKSGEFLKYIEDDQEPVQGGIFALSWLD--------------SQ-K-FATVGADATIRVWDVTTSKCVQKWTLDKQ  294 (325)
T ss_dssp             TTTCCEEEECCBTTBCCCSCEEEEEESS--------------SS-E-EEEEETTSEEEEEETTTTEEEEEEECCTT
T ss_pred             eccccccccccccccccccceeeeeccC--------------CC-E-EEEEeCCCeEEEEECCCCCEEEEEEecCC
Confidence            9999999999988764322111111111              11 2 34567899999999999999998886654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.41  E-value=2.5e-05  Score=71.65  Aligned_cols=83  Identities=10%  Similarity=0.166  Sum_probs=60.5

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (453)
                      .......+.+++.+|+++++++....|.|.++|+.++..++.+||+++.    |.........    .-.|   +.  -+
T Consensus       304 ~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~----V~~~~~~~~~----~~sp---d~--~~  370 (388)
T d1erja_         304 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS----VISVAVANGS----SLGP---EY--NV  370 (388)
T ss_dssp             EECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSC----EEEEEECSSC----TTCT---TC--EE
T ss_pred             cccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCC----EEEEEEecCc----ccCC---CC--CE
Confidence            4455667889999999999999999999999999999999999999873    2211110000    0001   11  24


Q ss_pred             EEEcCCCCeEEEeecC
Q 012917          383 AIHAPRKGIIEVWQMR  398 (453)
Q Consensus       383 vIyaprRg~lEVW~~~  398 (453)
                      ++-+..+|.|.||+++
T Consensus       371 l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         371 FATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEEETTSEEEEEEEE
T ss_pred             EEEEeCCCEEEEEeee
Confidence            5668899999999985

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=0.0029  Score=54.12  Aligned_cols=104  Identities=13%  Similarity=0.090  Sum_probs=68.2

Q ss_pred             CCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEeccccc-cccc-ccC--CCCCCccE
Q 012917          305 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAA-TSSA-YYA--PVKSDYCL  380 (453)
Q Consensus       305 D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~-~~~~-~~~--~~k~~~~l  380 (453)
                      ........++.+|+++++++++..|.|.++|+.++..++.++++++.-.. +......... .... ...  ......  
T Consensus       141 ~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--  217 (317)
T d1vyhc1         141 GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC-ISWAPESSYSSISEATGSETKKSGKPG--  217 (317)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE-EEECCSCGGGGGGGCCSCC-------C--
T ss_pred             cCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceE-EEEeeccccceeeccccceeeeeccCC--
Confidence            34445677899999999999999999999999999999999999884322 2211111100 0000 000  000011  


Q ss_pred             EEEEEcCCCCeEEEeecCCCCeEEEEEecCC
Q 012917          381 CLAIHAPRKGIIEVWQMRTGPRLLTIQCAKG  411 (453)
Q Consensus       381 ~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~  411 (453)
                      .+++-+..+|.|.+|++++|..+..+..+.+
T Consensus       218 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~  248 (317)
T d1vyhc1         218 PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN  248 (317)
T ss_dssp             CEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             ceeEeccCCCEEEEEECCCCcEEEEEeCCCC
Confidence            1334566789999999999999888876544

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.01  E-value=0.0002  Score=63.21  Aligned_cols=91  Identities=13%  Similarity=0.069  Sum_probs=64.9

Q ss_pred             cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEeccccc-ceeeEEEEEecccccccccccCCCCCCccE
Q 012917          302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD-ASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (453)
Q Consensus       302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRd-Aqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (453)
                      .+......+.+|+.+|+++++|++...|.|.++|+.....++.+..... ..+..+...  .              +.. 
T Consensus       221 ~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--~--------------~~~-  283 (340)
T d1tbga_         221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS--K--------------SGR-  283 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC--S--------------SSC-
T ss_pred             EEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEEC--C--------------CCC-
Confidence            3445556688999999999999999999999999999988877644332 222222211  0              111 


Q ss_pred             EEEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917          381 CLAIHAPRKGIIEVWQMRTGPRLLTIQCAK  410 (453)
Q Consensus       381 ~LvIyaprRg~lEVW~~~~G~RV~a~~v~~  410 (453)
                       +++-+-.+|.|.||++++|..+..+..+.
T Consensus       284 -~l~~g~~dg~i~iwd~~~~~~~~~~~~H~  312 (340)
T d1tbga_         284 -LLLAGYDDFNCNVWDALKADRAGVLAGHD  312 (340)
T ss_dssp             -EEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             -EEEEEECCCEEEEEECCCCcEEEEEcCCC
Confidence             33456778999999999999998876443

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.033  Score=50.21  Aligned_cols=81  Identities=11%  Similarity=0.103  Sum_probs=57.4

Q ss_pred             CCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEc
Q 012917          307 PRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA  386 (453)
Q Consensus       307 ~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya  386 (453)
                      ...+.+++.+|+++++++....|.|.++|+.++...+. +++.+    .+....-.+             +..  +++-+
T Consensus       224 ~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~----~i~~v~~s~-------------~g~--~l~s~  283 (337)
T d1gxra_         224 TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL-HLHES----CVLSLKFAY-------------CGK--WFVST  283 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE-CCCSS----CEEEEEECT-------------TSS--EEEEE
T ss_pred             ccceEEEEEcccccccceeccccccccccccccccccc-ccccc----ccceEEECC-------------CCC--EEEEE
Confidence            34577899999999999999999999999999987654 44444    222111111             111  23446


Q ss_pred             CCCCeEEEeecCCCCeEEEEE
Q 012917          387 PRKGIIEVWQMRTGPRLLTIQ  407 (453)
Q Consensus       387 prRg~lEVW~~~~G~RV~a~~  407 (453)
                      -.+|.|.||+..+|.++..+.
T Consensus       284 s~Dg~i~iwd~~~~~~~~~~~  304 (337)
T d1gxra_         284 GKDNLLNAWRTPYGASIFQSK  304 (337)
T ss_dssp             ETTSEEEEEETTTCCEEEEEE
T ss_pred             eCCCeEEEEECCCCCEEEEcc
Confidence            678999999999999887654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.46  E-value=0.00025  Score=66.68  Aligned_cols=90  Identities=22%  Similarity=0.282  Sum_probs=66.4

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEE--c-CCCcEEEEEcCCceEEEEec-------------ccccceeeEEEEEecccccc
Q 012917          303 LKDHPRKGERLTLSPSGSLAAIT--D-SLGRILLLDTQALVVVRLWK-------------GYRDASCVFMEMLVNKDAAT  366 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~t--D-slGRV~LiD~~~~~ivRmWK-------------GyRdAqc~Wi~~~~~~~~~~  366 (453)
                      +..+...+.+|+.+|+|+++|+.  | +.|.|-|+|+.++..++.++             |+++    ||....=.+   
T Consensus       227 l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~----~V~~l~fsp---  299 (393)
T d1sq9a_         227 MINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS----WVMSLSFND---  299 (393)
T ss_dssp             --CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS----CEEEEEECS---
T ss_pred             cccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccC----ceeeeccCC---
Confidence            44556678999999999888875  3 45789999999999998875             5555    443322111   


Q ss_pred             cccccCCCCCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEecCC
Q 012917          367 SSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKG  411 (453)
Q Consensus       367 ~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~  411 (453)
                                +..  +++-+..+|.|.||++++|.++.+++-+.+
T Consensus       300 ----------d~~--~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~  332 (393)
T d1sq9a_         300 ----------SGE--TLCSAGWDGKLRFWDVKTKERITTLNMHCD  332 (393)
T ss_dssp             ----------SSS--EEEEEETTSEEEEEETTTTEEEEEEECCGG
T ss_pred             ----------CCC--eeEEECCCCEEEEEECCCCCEEEEECCcCC
Confidence                      111  457889999999999999999999986654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.34  E-value=0.012  Score=54.33  Aligned_cols=48  Identities=15%  Similarity=0.010  Sum_probs=41.5

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEeccccc
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD  350 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRd  350 (453)
                      .....-.+.+++.+|+|+++|+....|.|.++|+.++..+..++++..
T Consensus       197 ~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  244 (371)
T d1k8kc_         197 SSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL  244 (371)
T ss_dssp             CCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC
T ss_pred             ccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccc
Confidence            445556678999999999888888889999999999999999998776

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.0012  Score=56.25  Aligned_cols=87  Identities=18%  Similarity=0.225  Sum_probs=64.5

Q ss_pred             ccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccE
Q 012917          301 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (453)
Q Consensus       301 ~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (453)
                      .++.+..+.+.  |++|+|+++|+....|.|.|+|+.++..++.++|+.+.    |..... +             . . 
T Consensus         9 ~~~~~~~~~V~--c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~----V~~v~~-~-------------~-~-   66 (293)
T d1p22a2           9 HCRSETSKGVY--CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGS----VLCLQY-D-------------E-R-   66 (293)
T ss_dssp             ECCCSSCCCEE--EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSC----EEEEEC-C-------------S-S-
T ss_pred             eccCCCCCCEE--EEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCC----Eeeeec-c-------------c-c-
Confidence            44555555554  57899999999999999999999999999999999884    332221 1             0 1 


Q ss_pred             EEEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917          381 CLAIHAPRKGIIEVWQMRTGPRLLTIQCAK  410 (453)
Q Consensus       381 ~LvIyaprRg~lEVW~~~~G~RV~a~~v~~  410 (453)
                       +++-+..+|.+.+|+++.+..........
T Consensus        67 -~l~s~s~D~~i~~~~~~~~~~~~~~~~~~   95 (293)
T d1p22a2          67 -VIITGSSDSTVRVWDVNTGEMLNTLIHHC   95 (293)
T ss_dssp             -EEEEEETTSCEEEEESSSCCEEEEECCCC
T ss_pred             -eeecccccccccccccccccccccccccc
Confidence             34567789999999998887776665443

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.27  E-value=0.0034  Score=53.68  Aligned_cols=51  Identities=22%  Similarity=0.178  Sum_probs=46.7

Q ss_pred             ccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccc
Q 012917          301 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA  351 (453)
Q Consensus       301 ~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdA  351 (453)
                      ..|.-++..+.+|+.+|+++++|++...|.|.|+|+.++..++.++|+.+.
T Consensus        11 ~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~   61 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDS   61 (317)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSC
T ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCc
Confidence            457778888999999999999999988999999999999999999998873

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.03  E-value=0.0012  Score=57.72  Aligned_cols=86  Identities=13%  Similarity=0.096  Sum_probs=62.5

Q ss_pred             ccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccE
Q 012917          301 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (453)
Q Consensus       301 ~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (453)
                      ..|.-+...+.. |++|+++++|+....|.|.|+|+.++..++.++|+.+    .|....-.+             +.  
T Consensus         6 ~tL~GH~~~vit-c~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~----~V~~l~~s~-------------~~--   65 (355)
T d1nexb2           6 TTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDG----GVWALKYAH-------------GG--   65 (355)
T ss_dssp             EEEECCSSSCEE-EEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSS----CEEEEEEET-------------TT--
T ss_pred             EEECCcCCCcEE-EEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCC----CEEEEEEcC-------------CC--
Confidence            346666565544 6889999999999999999999999999999999987    343322111             11  


Q ss_pred             EEEEEcCCCCeEEEeecCCCCeEEEEE
Q 012917          381 CLAIHAPRKGIIEVWQMRTGPRLLTIQ  407 (453)
Q Consensus       381 ~LvIyaprRg~lEVW~~~~G~RV~a~~  407 (453)
                       +++-+..+|.|.+|++..+..+....
T Consensus        66 -~l~s~s~D~~i~iw~~~~~~~~~~~~   91 (355)
T d1nexb2          66 -ILVSGSTDRTVRVWDIKKGCCTHVFE   91 (355)
T ss_dssp             -EEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred             -EEEEEecccccccccccccccccccc
Confidence             23567789999999998876654443

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.96  E-value=0.088  Score=44.79  Aligned_cols=89  Identities=10%  Similarity=0.042  Sum_probs=56.1

Q ss_pred             eeeeccCcceeeeeecceEEEEeecCCC-CCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEecC-CcE
Q 012917           34 NLLCALDMHTIALANRYQTVIINWADPE-GLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLK-GDL  111 (453)
Q Consensus        34 ~~~~sp~~~~la~A~~~~~v~~~w~~~~-~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~-G~L  111 (453)
                      .++.||++++||.|-...-|-. |+-.. .........+.-  ...|+++.|.|- +-..++.|..+|.|+++... +..
T Consensus        16 ~l~fsp~~~~L~s~s~Dg~v~i-wd~~~~~~~~~~~~~~~h--~~~V~~v~f~~~-~~~~l~sg~~d~~v~~w~~~~~~~   91 (342)
T d1yfqa_          16 DIKIIPSKSLLLITSWDGSLTV-YKFDIQAKNVDLLQSLRY--KHPLLCCNFIDN-TDLQIYVGTVQGEILKVDLIGSPS   91 (342)
T ss_dssp             EEEEEGGGTEEEEEETTSEEEE-EEEETTTTEEEEEEEEEC--SSCEEEEEEEES-SSEEEEEEETTSCEEEECSSSSSS
T ss_pred             EEEEeCCCCEEEEEECCCeEEE-EEccCCCcceEEEEecCC--CCCEEEEEEeCC-CCCEEEEcccccceeeeecccccc
Confidence            5788999999999876644321 43222 122333333321  356999998874 55789999999999999954 444


Q ss_pred             eeecccCccceeEEE
Q 012917          112 VHRQLIHPGRILKLR  126 (453)
Q Consensus       112 L~sQ~lh~~pV~~ik  126 (453)
                      ......|...+....
T Consensus        92 ~~~~~~~~~~~~~~~  106 (342)
T d1yfqa_          92 FQALTNNEANLGICR  106 (342)
T ss_dssp             EEECBSCCCCSCEEE
T ss_pred             ccccccccccccccc
Confidence            444444544444443

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.005  Score=53.38  Aligned_cols=78  Identities=10%  Similarity=0.238  Sum_probs=56.7

Q ss_pred             EEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeE
Q 012917          313 LTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGII  392 (453)
Q Consensus       313 i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~l  392 (453)
                      .+++|+++++++....|+|.++|+......+..++...-...-..+.-.               ..   +++-+..+|.|
T Consensus       221 ~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~---~~~s~s~Dg~i  282 (342)
T d2ovrb2         221 SGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---------------KN---FVITSSDDGTV  282 (342)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---------------SS---EEEEEETTSEE
T ss_pred             eEEecCCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC---------------CC---eeEEEcCCCEE
Confidence            3556667788888889999999999999999988866522211111111               01   44667789999


Q ss_pred             EEeecCCCCeEEEEEe
Q 012917          393 EVWQMRTGPRLLTIQC  408 (453)
Q Consensus       393 EVW~~~~G~RV~a~~v  408 (453)
                      .||++++|+.+..+..
T Consensus       283 ~iwd~~tg~~i~~~~~  298 (342)
T d2ovrb2         283 KLWDLKTGEFIRNLVT  298 (342)
T ss_dssp             EEEETTTCCEEEEEEE
T ss_pred             EEEECCCCCEEEEEec
Confidence            9999999999988864

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=96.92  E-value=0.0017  Score=57.38  Aligned_cols=80  Identities=11%  Similarity=-0.030  Sum_probs=59.0

Q ss_pred             EEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeE
Q 012917          313 LTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGII  392 (453)
Q Consensus       313 i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~l  392 (453)
                      ++++|+++|++++...+.|.+||+.++.+++..|.--.-...-+...  .              |.. +|.+-..+.|.|
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~s--p--------------DG~-~l~v~~~~~~~v   64 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMA--P--------------DNR-TAYVLNNHYGDI   64 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEEC--T--------------TSS-EEEEEETTTTEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEEC--C--------------CCC-EEEEEECCCCcE
Confidence            46799999999999999999999999999998873211112222221  1              111 455677889999


Q ss_pred             EEeecCCCCeEEEEEec
Q 012917          393 EVWQMRTGPRLLTIQCA  409 (453)
Q Consensus       393 EVW~~~~G~RV~a~~v~  409 (453)
                      .+|++.+|..+..+..+
T Consensus        65 ~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_          65 YGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             EEEETTTTEEEEEEESC
T ss_pred             EEEeCccCeeeeeeccc
Confidence            99999999999887754

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.77  E-value=0.0062  Score=53.05  Aligned_cols=86  Identities=13%  Similarity=0.134  Sum_probs=66.9

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (453)
                      +.........+..+|++.++++....|.|.++|+.++..+...+|+.+.- .-+..   .              +.   +
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v-~~~~~---~--------------~~---~  255 (355)
T d1nexb2         197 LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALV-GLLRL---S--------------DK---F  255 (355)
T ss_dssp             ECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCC-CEEEE---C--------------SS---E
T ss_pred             eeccccccccccccccceeeecccccceEEeeeccccccccccccccccc-ccccc---c--------------cc---e
Confidence            44455667788999999999999999999999999999999999987632 22211   1              01   4


Q ss_pred             EEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917          383 AIHAPRKGIIEVWQMRTGPRLLTIQCA  409 (453)
Q Consensus       383 vIyaprRg~lEVW~~~~G~RV~a~~v~  409 (453)
                      ++.+..+|.|.+|+++++.+....+-.
T Consensus       256 l~~~~~dg~i~iwd~~~~~~~~~~~~~  282 (355)
T d1nexb2         256 LVSAAADGSIRGWDANDYSRKFSYHHT  282 (355)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECT
T ss_pred             eeeeecccccccccccccceecccccC
Confidence            567888999999999999988777643

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.54  E-value=0.014  Score=53.14  Aligned_cols=84  Identities=10%  Similarity=0.103  Sum_probs=62.0

Q ss_pred             CCCeeeEEEECCCCCE-EEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEE
Q 012917          306 HPRKGERLTLSPSGSL-AAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI  384 (453)
Q Consensus       306 ~~R~~~~i~lsP~~~l-aa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI  384 (453)
                      ....+.+++.+|++++ +++....|.|.++|+.++..+..++++...    |....-.+             +..  +++
T Consensus       145 h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~----i~~v~~~p-------------~~~--~l~  205 (311)
T d1nr0a1         145 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKF----VHSVRYNP-------------DGS--LFA  205 (311)
T ss_dssp             CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSC----EEEEEECT-------------TSS--EEE
T ss_pred             cccccccccccccceeeeccccccccccccccccccccccccccccc----ccccccCc-------------ccc--ccc
Confidence            3445788999999975 566678899999999999999999998773    32221111             111  234


Q ss_pred             EcCCCCeEEEeecCCCCeEEEEEe
Q 012917          385 HAPRKGIIEVWQMRTGPRLLTIQC  408 (453)
Q Consensus       385 yaprRg~lEVW~~~~G~RV~a~~v  408 (453)
                      .+-.+|.|.+|+++++.++..+..
T Consensus       206 ~~~~d~~v~~~d~~~~~~~~~~~~  229 (311)
T d1nr0a1         206 STGGDGTIVLYNGVDGTKTGVFED  229 (311)
T ss_dssp             EEETTSCEEEEETTTCCEEEECBC
T ss_pred             cccccccccccccccccccccccc
Confidence            466799999999999998887653

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.029  Score=50.58  Aligned_cols=88  Identities=18%  Similarity=0.245  Sum_probs=66.1

Q ss_pred             cCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEE
Q 012917          304 KDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLA  383 (453)
Q Consensus       304 ~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~Lv  383 (453)
                      ......+..++.+|++.+++++...+.|.++|+.++...+..+++.+.    +....-..             +..  ++
T Consensus       138 ~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~----v~~l~~s~-------------~~~--~~  198 (337)
T d1gxra_         138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG----ASCIDISN-------------DGT--KL  198 (337)
T ss_dssp             ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC----EEEEEECT-------------TSS--EE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccc----cccccccc-------------ccc--cc
Confidence            334455678899999999999999999999999999999999988773    32221111             011  34


Q ss_pred             EEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917          384 IHAPRKGIIEVWQMRTGPRLLTIQCAK  410 (453)
Q Consensus       384 IyaprRg~lEVW~~~~G~RV~a~~v~~  410 (453)
                      +.+-.+|.+.+|+++++..+..+....
T Consensus       199 ~~~~~d~~v~i~d~~~~~~~~~~~~~~  225 (337)
T d1gxra_         199 WTGGLDNTVRSWDLREGRQLQQHDFTS  225 (337)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred             ccccccccccccccccceeeccccccc
Confidence            567789999999999999887776443

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.013  Score=50.53  Aligned_cols=49  Identities=14%  Similarity=0.064  Sum_probs=41.7

Q ss_pred             cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccc
Q 012917          302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA  351 (453)
Q Consensus       302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdA  351 (453)
                      .|.-+...+.+ +++|+|+++|++...|.|.|+|+.++..++.++|+.+.
T Consensus        11 ~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~   59 (342)
T d2ovrb2          11 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG   59 (342)
T ss_dssp             EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSC
T ss_pred             EECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCC
Confidence            46655555655 68999999999999999999999999999999999874

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.44  E-value=0.012  Score=51.29  Aligned_cols=51  Identities=14%  Similarity=0.102  Sum_probs=46.8

Q ss_pred             CccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEeccccc
Q 012917          300 LTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD  350 (453)
Q Consensus       300 l~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRd  350 (453)
                      ...|.-++..+.+|+.+|+++++|++...|.|.++|+.++..++.++++-+
T Consensus        48 ~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~   98 (340)
T d1tbga_          48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSS   98 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCS
T ss_pred             eEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccc
Confidence            356888999999999999999999999999999999999999999998765

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.32  E-value=0.023  Score=51.18  Aligned_cols=88  Identities=17%  Similarity=0.192  Sum_probs=64.0

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (453)
                      .......+.+|+.+|+|++++++...|.|.++|...+..++.++|+.+.    +....-..             +.  ..
T Consensus       117 ~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~----v~~~~~~~-------------~~--~~  177 (388)
T d1erja_         117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQD----IYSLDYFP-------------SG--DK  177 (388)
T ss_dssp             --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC----EEEEEECT-------------TS--SE
T ss_pred             ccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccccccc----cccccccc-------------cc--cc
Confidence            3445566889999999999999999999999999999999999998873    22221111             01  13


Q ss_pred             EEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917          383 AIHAPRKGIIEVWQMRTGPRLLTIQCA  409 (453)
Q Consensus       383 vIyaprRg~lEVW~~~~G~RV~a~~v~  409 (453)
                      ++.+-..|.+.+|+++++..+......
T Consensus       178 ~~~~~~~~~i~~~d~~~~~~~~~~~~~  204 (388)
T d1erja_         178 LVSGSGDRTVRIWDLRTGQCSLTLSIE  204 (388)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred             ccccccceeeeeeeccccccccccccc
Confidence            355667888999998887766655543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.29  E-value=0.011  Score=54.61  Aligned_cols=78  Identities=9%  Similarity=-0.030  Sum_probs=55.3

Q ss_pred             eeEEEECCCCCEEEEEcCCCcEEEEEcCCce--EEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917          310 GERLTLSPSGSLAAITDSLGRILLLDTQALV--VVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP  387 (453)
Q Consensus       310 ~~~i~lsP~~~laa~tDslGRV~LiD~~~~~--ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap  387 (453)
                      +.+++.+|+|+++|++...|.|.|+|+.++.  .++.+||+.++    |....-.+          .   ..  +++-+.
T Consensus        10 It~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~----V~~l~fsp----------~---~~--~l~s~s   70 (371)
T d1k8kc_          10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ----VTGVDWAP----------D---SN--RIVTCG   70 (371)
T ss_dssp             CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSC----EEEEEEET----------T---TT--EEEEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCC----EEEEEECC----------C---CC--EEEEEE
Confidence            7899999999999999888999999998775  66778999873    32221111          0   01  234467


Q ss_pred             CCCeEEEeecCCCCeEEEE
Q 012917          388 RKGIIEVWQMRTGPRLLTI  406 (453)
Q Consensus       388 rRg~lEVW~~~~G~RV~a~  406 (453)
                      .+|.|.||+++++.....+
T Consensus        71 ~D~~i~vWd~~~~~~~~~~   89 (371)
T d1k8kc_          71 TDRNAYVWTLKGRTWKPTL   89 (371)
T ss_dssp             TTSCEEEEEEETTEEEEEE
T ss_pred             CCCeEEEEeeccccccccc
Confidence            7899999998766543333

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=96.27  E-value=0.026  Score=48.52  Aligned_cols=83  Identities=12%  Similarity=0.106  Sum_probs=59.7

Q ss_pred             eeeEEEECCCCCEEEEE-cCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917          309 KGERLTLSPSGSLAAIT-DSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP  387 (453)
Q Consensus       309 ~~~~i~lsP~~~laa~t-DslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap  387 (453)
                      ....|++||+|++++++ ...|+|.++|+.++..++.+++..+..  .+..  ..+               .-++++...
T Consensus        33 ~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~--~~~~--~~~---------------~~~~~~~~~   93 (301)
T d1l0qa2          33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQ--GVAV--SPD---------------GKQVYVTNM   93 (301)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEE--EEEE--CTT---------------SSEEEEEET
T ss_pred             CceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccc--cccc--ccc---------------ccccccccc
Confidence            35679999999977665 467899999999999999998876532  1211  111               114556777


Q ss_pred             CCCeEEEeecCCCCeEEEEEecC
Q 012917          388 RKGIIEVWQMRTGPRLLTIQCAK  410 (453)
Q Consensus       388 rRg~lEVW~~~~G~RV~a~~v~~  410 (453)
                      ..+.+.+|+.+++..+..+....
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~  116 (301)
T d1l0qa2          94 ASSTLSVIDTTSNTVAGTVKTGK  116 (301)
T ss_dssp             TTTEEEEEETTTTEEEEEEECSS
T ss_pred             ccceeeecccccceeeeeccccc
Confidence            77888888888888777776554

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=96.19  E-value=0.031  Score=48.05  Aligned_cols=84  Identities=15%  Similarity=0.113  Sum_probs=60.6

Q ss_pred             eeeEEEECCCCCEEEEE--c-CCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEE
Q 012917          309 KGERLTLSPSGSLAAIT--D-SLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH  385 (453)
Q Consensus       309 ~~~~i~lsP~~~laa~t--D-slGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIy  385 (453)
                      ....++++|+++.+.++  | ..++|.++|+.++.+++.+..-.+  ...+.+.  .+          +   .  +|.+-
T Consensus       201 ~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~--~~~va~s--pd----------g---~--~l~va  261 (301)
T d1l0qa2         201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD--PAGIAVT--PD----------G---K--KVYVA  261 (301)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS--EEEEEEC--TT----------S---S--EEEEE
T ss_pred             CcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCC--EEEEEEe--CC----------C---C--EEEEE
Confidence            34568899998766553  3 458899999999999887765333  2223221  11          1   1  46677


Q ss_pred             cCCCCeEEEeecCCCCeEEEEEecCC
Q 012917          386 APRKGIIEVWQMRTGPRLLTIQCAKG  411 (453)
Q Consensus       386 aprRg~lEVW~~~~G~RV~a~~v~~~  411 (453)
                      ....|.|.||++.+|..+.++.++++
T Consensus       262 ~~~~~~i~v~D~~t~~~~~~~~vg~~  287 (301)
T d1l0qa2         262 LSFCNTVSVIDTATNTITATMAVGKN  287 (301)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred             ECCCCeEEEEECCCCeEEEEEeCCCC
Confidence            78899999999999999999998775

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.12  E-value=0.02  Score=49.85  Aligned_cols=87  Identities=22%  Similarity=0.239  Sum_probs=56.2

Q ss_pred             CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEE-EecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEc
Q 012917          308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVR-LWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA  386 (453)
Q Consensus       308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivR-mWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya  386 (453)
                      -.+.+++.+|+|+++|+.+..|+|.++|+.++..+. .|.++.+    .+....-.+.... .... . .+.  -+++-+
T Consensus       163 ~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~----~v~~~~~~p~~~~-~~~~-~-~~~--~~l~sg  233 (287)
T d1pgua2         163 AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTS----KINAISWKPAEKG-ANEE-E-IEE--DLVATG  233 (287)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSS----CEEEEEECCCC--------C-CSC--CEEEEE
T ss_pred             CceeEEEeccCccccccccccccccceeeccccccccccccccc----ccceeeecccccc-cccc-c-CCC--CeeEee
Confidence            347889999999999999999999999999998765 5777655    2222111110000 0000 0 111  134567


Q ss_pred             CCCCeEEEeecCCCCeE
Q 012917          387 PRKGIIEVWQMRTGPRL  403 (453)
Q Consensus       387 prRg~lEVW~~~~G~RV  403 (453)
                      -.+|.|.||+++++.+.
T Consensus       234 s~D~~i~iw~~~~~~~~  250 (287)
T d1pgua2         234 SLDTNIFIYSVKRPMKI  250 (287)
T ss_dssp             ETTSCEEEEESSCTTCC
T ss_pred             cCCCeEEEEECCCCCeE
Confidence            78999999999875543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.09  E-value=0.025  Score=50.33  Aligned_cols=87  Identities=21%  Similarity=0.201  Sum_probs=59.2

Q ss_pred             CCCCeeeEEEECCCCCEEEEEc-----CCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCcc
Q 012917          305 DHPRKGERLTLSPSGSLAAITD-----SLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYC  379 (453)
Q Consensus       305 D~~R~~~~i~lsP~~~laa~tD-----slGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~  379 (453)
                      |++|...  +++|+|+.+.++|     ..+.|.++|..++.+++..++-....++|-     .|          +   ..
T Consensus         1 ~~p~~~~--a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~~~a~S-----pD----------g---~~   60 (355)
T d2bbkh_           1 DEPRILE--APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVA-----DD----------G---SF   60 (355)
T ss_dssp             CCCCBCC--CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEEC-----TT----------S---SC
T ss_pred             CCCcEeE--eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCCceEEc-----CC----------C---CE
Confidence            4455544  5689998888875     245699999999999999886555444441     11          0   11


Q ss_pred             EEEEEE-------cCCCCeEEEeecCCCCeEEEEEecCC
Q 012917          380 LCLAIH-------APRKGIIEVWQMRTGPRLLTIQCAKG  411 (453)
Q Consensus       380 l~LvIy-------aprRg~lEVW~~~~G~RV~a~~v~~~  411 (453)
                      ++.+-.       ..+.|.|.||++.+|..+..+..+.+
T Consensus        61 l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~   99 (355)
T d2bbkh_          61 IAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDA   99 (355)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC
T ss_pred             EEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCc
Confidence            222211       24568999999999999999887654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.04  E-value=0.02  Score=50.03  Aligned_cols=48  Identities=19%  Similarity=0.122  Sum_probs=41.5

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEec-cccc
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWK-GYRD  350 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWK-GyRd  350 (453)
                      +.=+.+.+.+|+.+|+|+++|+++..|.|.++|+.++..++.+. ++.+
T Consensus         8 ~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~   56 (299)
T d1nr0a2           8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHAT   56 (299)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSS
T ss_pred             cCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCC
Confidence            44466779999999999999999999999999999999999985 4554

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=96.02  E-value=0.018  Score=52.03  Aligned_cols=84  Identities=15%  Similarity=0.079  Sum_probs=56.7

Q ss_pred             eeEEEECCCCCEEEEE-----cCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEE-
Q 012917          310 GERLTLSPSGSLAAIT-----DSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLA-  383 (453)
Q Consensus       310 ~~~i~lsP~~~laa~t-----DslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~Lv-  383 (453)
                      ...++++|+|+.++++     +..++|.++|..++.+++...+--...++|-.     |          +   ..++.+ 
T Consensus        23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~~~a~Sp-----D----------G---~~l~va~   84 (373)
T d2madh_          23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAH-----S----------G---SEFALAS   84 (373)
T ss_pred             ccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCccEEEcC-----C----------C---CEEEEEe
Confidence            3455688999877765     56689999999999999887654443333321     1          0   111111 


Q ss_pred             ------EEcCCCCeEEEeecCCCCeEEEEEecCC
Q 012917          384 ------IHAPRKGIIEVWQMRTGPRLLTIQCAKG  411 (453)
Q Consensus       384 ------IyaprRg~lEVW~~~~G~RV~a~~v~~~  411 (453)
                            ....+.|.|.||+.++++.+..+..+..
T Consensus        85 ~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~  118 (373)
T d2madh_          85 TSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDA  118 (373)
T ss_pred             ecCCcccccccceEEEEEECCCCcEEEEEecCCc
Confidence                  1235678999999999999888776644

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.29  E-value=0.066  Score=46.47  Aligned_cols=77  Identities=14%  Similarity=0.123  Sum_probs=53.3

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCce--EEEEecccccceeeEEEEEecccccccccccCCCCCCccE
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALV--VVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~--ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (453)
                      +......+.+++.+|+++++|+....|.|.++|+.++.  .+...+++....+.-+... +               + . 
T Consensus       220 ~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~---------------~-~-  281 (299)
T d1nr0a2         220 WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-N---------------E-T-  281 (299)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEE-E---------------T-T-
T ss_pred             ccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEEC-C---------------C-C-
Confidence            33445678889999999999999889999999998764  3445555555443322211 1               1 1 


Q ss_pred             EEEEEcCCCCeEEEeecC
Q 012917          381 CLAIHAPRKGIIEVWQMR  398 (453)
Q Consensus       381 ~LvIyaprRg~lEVW~~~  398 (453)
                       .+|-+..+|.|.||++.
T Consensus       282 -~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         282 -TIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             -EEEEEETTSCEEEEECC
T ss_pred             -EEEEEeCCCEEEEEecc
Confidence             33557789999999985

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.25  E-value=0.057  Score=51.86  Aligned_cols=114  Identities=11%  Similarity=0.147  Sum_probs=66.3

Q ss_pred             ECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEE
Q 012917          315 LSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEV  394 (453)
Q Consensus       315 lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEV  394 (453)
                      .++.+-++++....|+|.|+|..++.+++..++-..    -..+.-..|              .. +|++ +-++|.|.+
T Consensus        28 ~~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~----~~~v~fSpD--------------G~-~l~~-~s~dg~v~~   87 (432)
T d1qksa2          28 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA----VHISRLSAS--------------GR-YLFV-IGRDGKVNM   87 (432)
T ss_dssp             CCGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSC----EEEEEECTT--------------SC-EEEE-EETTSEEEE
T ss_pred             CCCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCCC----eeEEEECCC--------------CC-EEEE-EcCCCCEEE
Confidence            344444456667889999999999999999987642    111111111              11 3433 567899999


Q ss_pred             eecCCCC--eEEEEEecCCeE--EeccccccCccCC-CCCCcCcEEEEEeCCCCceEEE
Q 012917          395 WQMRTGP--RLLTIQCAKGSK--ILQPTYRFGSSMA-SSPYVPLEVFLLNGDSGQLSVL  448 (453)
Q Consensus       395 W~~~~G~--RV~a~~v~~~~~--Ll~~~~~~~g~~~-~~~~~~~~~~lld~~~g~l~~i  448 (453)
                      |++.++.  .+..+.++.+.+  .+.+....-|.-- .+.+.+..+.++|..+|++...
T Consensus        88 ~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~  146 (432)
T d1qksa2          88 IDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKI  146 (432)
T ss_dssp             EETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEE
T ss_pred             EEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceee
Confidence            9999877  455555544322  2222211111000 1124467788888877776644

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.70  E-value=0.14  Score=46.10  Aligned_cols=92  Identities=12%  Similarity=0.111  Sum_probs=61.8

Q ss_pred             ccCCCCeeeEEEECCCCCE-EEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEE
Q 012917          303 LKDHPRKGERLTLSPSGSL-AAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC  381 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~l-aa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~  381 (453)
                      +......+.++..+|++.+ +++....|.|.++|..++......+..+.. -.++....-.          |..  .  -
T Consensus       155 ~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~-~~~v~~v~~~----------pd~--~--~  219 (325)
T d1pgua1         155 VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ-GSFVRDVEFS----------PDS--G--E  219 (325)
T ss_dssp             CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCT-TCCEEEEEEC----------STT--C--C
T ss_pred             eeecccccccccccccccceEEEeecccccccccccccccceecccccCC-CCccEEeeec----------ccc--c--e
Confidence            4445677888999998864 555667899999999998888777664432 1133222111          111  1  1


Q ss_pred             EEEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917          382 LAIHAPRKGIIEVWQMRTGPRLLTIQCA  409 (453)
Q Consensus       382 LvIyaprRg~lEVW~~~~G~RV~a~~v~  409 (453)
                      +++-+-.+|.|.+|+++++..+..+..+
T Consensus       220 ~l~s~~~d~~i~iwd~~~~~~~~~l~~~  247 (325)
T d1pgua1         220 FVITVGSDRKISCFDGKSGEFLKYIEDD  247 (325)
T ss_dssp             EEEEEETTCCEEEEETTTCCEEEECCBT
T ss_pred             eccccccccceeeeeecccccccccccc
Confidence            3455667999999999999998887643

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.54  E-value=0.097  Score=45.28  Aligned_cols=45  Identities=13%  Similarity=0.084  Sum_probs=35.5

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEE-cCCCcEEEEEcCCceEEEEecc
Q 012917          303 LKDHPRKGERLTLSPSGSLAAIT-DSLGRILLLDTQALVVVRLWKG  347 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~t-DslGRV~LiD~~~~~ivRmWKG  347 (453)
                      +.+......+|++||+|+++.++ ...|.|.++|+.++.+++..+.
T Consensus        29 ~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~   74 (337)
T d1pbyb_          29 IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL   74 (337)
T ss_dssp             CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred             CCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEec
Confidence            34555566789999999987655 4569999999999999987754

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.46  E-value=0.041  Score=47.00  Aligned_cols=81  Identities=17%  Similarity=0.182  Sum_probs=55.5

Q ss_pred             CCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCce---EEEEecccccc--eeeEEEEEecccccccccccCCCCCCccEE
Q 012917          307 PRKGERLTLSPSGSLAAITDSLGRILLLDTQALV---VVRLWKGYRDA--SCVFMEMLVNKDAATSSAYYAPVKSDYCLC  381 (453)
Q Consensus       307 ~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~---ivRmWKGyRdA--qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~  381 (453)
                      +..+.+|+.+|+++++|++...|.|-|+|+.++.   .++.-.|+.++  .++|..   ..               .  .
T Consensus        11 ~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~---~~---------------~--~   70 (342)
T d1yfqa_          11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID---NT---------------D--L   70 (342)
T ss_dssp             SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE---SS---------------S--E
T ss_pred             CCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeC---CC---------------C--C
Confidence            3458899999999999999899999999986543   23333355553  223332   10               1  2


Q ss_pred             EEEEcCCCCeEEEeecCCCCeEEEEE
Q 012917          382 LAIHAPRKGIIEVWQMRTGPRLLTIQ  407 (453)
Q Consensus       382 LvIyaprRg~lEVW~~~~G~RV~a~~  407 (453)
                      +++-+-.+|.|.+|+++.+.......
T Consensus        71 ~l~sg~~d~~v~~w~~~~~~~~~~~~   96 (342)
T d1yfqa_          71 QIYVGTVQGEILKVDLIGSPSFQALT   96 (342)
T ss_dssp             EEEEEETTSCEEEECSSSSSSEEECB
T ss_pred             EEEEcccccceeeeeccccccccccc
Confidence            55667789999999998776655444

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=94.23  E-value=0.12  Score=44.84  Aligned_cols=89  Identities=12%  Similarity=-0.009  Sum_probs=60.2

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (453)
                      +.+..+....+..+|++.+.+..+ .++|.++|+.++..++.-+--..  ..-+.+..  |          +   .  .|
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~~--~~~va~s~--D----------G---~--~l  306 (346)
T d1jmxb_         247 FADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHT--YYCVAFDK--K----------G---D--KL  306 (346)
T ss_dssp             EEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSC--CCEEEECS--S----------S---S--CE
T ss_pred             eecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcCCCC--EEEEEEcC--C----------C---C--EE
Confidence            445566777888899876655433 47899999999999887653211  11222211  1          1   1  23


Q ss_pred             EEEcCCCCeEEEeecCCCCeEEEEEecCCe
Q 012917          383 AIHAPRKGIIEVWQMRTGPRLLTIQCAKGS  412 (453)
Q Consensus       383 vIyaprRg~lEVW~~~~G~RV~a~~v~~~~  412 (453)
                      ++ +-..|.|.||++++++.|..++++.|-
T Consensus       307 ~v-~~~d~~v~v~D~~t~~~i~~i~~p~g~  335 (346)
T d1jmxb_         307 YL-GGTFNDLAVFNPDTLEKVKNIKLPGGD  335 (346)
T ss_dssp             EE-ESBSSEEEEEETTTTEEEEEEECSSSC
T ss_pred             EE-EeCCCcEEEEECccCCEEEEEECCCCC
Confidence            33 356899999999999999999987653

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.18  E-value=0.2  Score=43.12  Aligned_cols=88  Identities=7%  Similarity=-0.061  Sum_probs=61.0

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL  382 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L  382 (453)
                      +....+....+..+|+++++++.|  +.|.++|+.++..++-.+--..  ...+.+.  .              +.. +|
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~--~~i~v~d~~~~~~~~~~~~~~~--~~~~~~s--~--------------dG~-~l  294 (337)
T d1pbyb_         236 VRIMDVFYFSTAVNPAKTRAFGAY--NVLESFDLEKNASIKRVPLPHS--YYSVNVS--T--------------DGS-TV  294 (337)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEEE--SEEEEEETTTTEEEEEEECSSC--CCEEEEC--T--------------TSC-EE
T ss_pred             ecCCCcceEEEEecccceEEEEcc--ccEEEEECCCCcEEEEEcCCCC--EEEEEEC--C--------------CCC-EE
Confidence            334456677788999999999887  7899999999998876543221  1122221  1              111 33


Q ss_pred             EEEcCCCCeEEEeecCCCCeEEEEEecCCe
Q 012917          383 AIHAPRKGIIEVWQMRTGPRLLTIQCAKGS  412 (453)
Q Consensus       383 vIyaprRg~lEVW~~~~G~RV~a~~v~~~~  412 (453)
                      ++ +-..|.|.||+.++++++..++++-++
T Consensus       295 ~v-~~~~~~i~v~D~~t~~~v~~i~~~g~~  323 (337)
T d1pbyb_         295 WL-GGALGDLAAYDAETLEKKGQVDLPGNA  323 (337)
T ss_dssp             EE-ESBSSEEEEEETTTCCEEEEEECGGGC
T ss_pred             EE-EeCCCcEEEEECCCCcEEEEEECCCCC
Confidence            33 467899999999999999999975443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.01  E-value=0.13  Score=48.29  Aligned_cols=81  Identities=12%  Similarity=-0.050  Sum_probs=53.5

Q ss_pred             eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEe-----cccccceeeEEEEEecccccccccccCCCCCCccEEEE
Q 012917          309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLW-----KGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLA  383 (453)
Q Consensus       309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmW-----KGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~Lv  383 (453)
                      ....|+.||||+++++++..|.|.++|+.++....+.     .|.+.    ++....-          .|   |.. +|+
T Consensus        63 ~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~----~~~s~~~----------sp---DG~-~l~  124 (426)
T d1hzua2          63 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARS----VESSKFK----------GY---EDR-YTI  124 (426)
T ss_dssp             SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEE----EEECCST----------TC---TTT-EEE
T ss_pred             CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcc----eEEeeee----------cC---CCC-EEE
Confidence            4678999999999999988899999999988644333     23322    2221111          01   111 344


Q ss_pred             EEcCCCCeEEEeecCCCCeEEEEE
Q 012917          384 IHAPRKGIIEVWQMRTGPRLLTIQ  407 (453)
Q Consensus       384 IyaprRg~lEVW~~~~G~RV~a~~  407 (453)
                      +-....+.+.+|+..++..+....
T Consensus       125 v~~~~~~~v~i~d~~~~~~~~~~~  148 (426)
T d1hzua2         125 AGAYWPPQFAIMDGETLEPKQIVS  148 (426)
T ss_dssp             EEEEESSEEEEEETTTCCEEEEEE
T ss_pred             EeecCCCeEEEEcCCccceeEEee
Confidence            555567899999999887766554

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.98  E-value=0.045  Score=50.67  Aligned_cols=48  Identities=15%  Similarity=0.055  Sum_probs=43.9

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEeccccc
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD  350 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRd  350 (453)
                      +.-+...+.+|+.+|+|+++|.+...|.|.|+|+.+|..++..+|+.+
T Consensus       285 ~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~  332 (393)
T d1sq9a_         285 EFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD  332 (393)
T ss_dssp             CBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGG
T ss_pred             eecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCC
Confidence            444566789999999999999999999999999999999999999988

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.68  E-value=0.33  Score=45.31  Aligned_cols=107  Identities=12%  Similarity=0.147  Sum_probs=59.7

Q ss_pred             CEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeecCC
Q 012917          320 SLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRT  399 (453)
Q Consensus       320 ~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~  399 (453)
                      -++++....|+|.|+|+.++.+++-.++...  ..=+..  ..|              .. +|+ -+-+.|.|.+|++.+
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~--~~~vaf--SPD--------------Gk-~l~-~~~~d~~v~vwd~~t   92 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRM--SAS--------------GR-YLL-VIGRDARIDMIDLWA   92 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSEEEEEECCSS--EEEEEE--CTT--------------SC-EEE-EEETTSEEEEEETTS
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCCC--eeEEEE--CCC--------------CC-EEE-EEeCCCCEEEEEccC
Confidence            3445566789999999999999999988642  211211  111              11 222 245789999999999


Q ss_pred             CCeEEE--EEecCCeE--EeccccccCccCC-CCCCcCcEEEEEeCCCCceE
Q 012917          400 GPRLLT--IQCAKGSK--ILQPTYRFGSSMA-SSPYVPLEVFLLNGDSGQLS  446 (453)
Q Consensus       400 G~RV~a--~~v~~~~~--Ll~~~~~~~g~~~-~~~~~~~~~~lld~~~g~l~  446 (453)
                      +.....  +..+.+-+  .+.+....-|.-- ...+.+..+.++|...+.+.
T Consensus        93 ~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~  144 (426)
T d1hzua2          93 KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK  144 (426)
T ss_dssp             SSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEE
T ss_pred             CceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCcccee
Confidence            885544  44433321  2222111111000 11134566667777666654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.59  E-value=0.88  Score=39.39  Aligned_cols=82  Identities=11%  Similarity=0.031  Sum_probs=54.3

Q ss_pred             eeeEEEECCCCCEEEE-EcCC-CcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEc
Q 012917          309 KGERLTLSPSGSLAAI-TDSL-GRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA  386 (453)
Q Consensus       309 ~~~~i~lsP~~~laa~-tDsl-GRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya  386 (453)
                      .+..++.||+|+++++ ++.- ..|.++|+.++.+.++..+-..-.  -+..  ..+              ..  .+++.
T Consensus        44 ~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~--~~~~--spd--------------g~--~l~~~  103 (360)
T d1k32a3          44 RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVF--AMGV--DRN--------------GK--FAVVA  103 (360)
T ss_dssp             CEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEE--EEEE--CTT--------------SS--EEEEE
T ss_pred             CEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEE--eeee--ccc--------------cc--cccee
Confidence            4688999999987765 4444 468899999999887654333211  1111  111              11  34566


Q ss_pred             CCCCeEEEeecCCCCeEEEEEecC
Q 012917          387 PRKGIIEVWQMRTGPRLLTIQCAK  410 (453)
Q Consensus       387 prRg~lEVW~~~~G~RV~a~~v~~  410 (453)
                      -.++.+.+|++.++.....+..+.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~  127 (360)
T d1k32a3         104 NDRFEIMTVDLETGKPTVIERSRE  127 (360)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECSS
T ss_pred             ccccccccccccccceeeeeeccc
Confidence            778999999999998887776543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=93.35  E-value=0.16  Score=48.55  Aligned_cols=87  Identities=13%  Similarity=-0.050  Sum_probs=57.8

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCce--EE---EEecccccceeeEEEEEecccccccccccCCCCCC
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALV--VV---RLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSD  377 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~--iv---RmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~  377 (453)
                      |+-+ .....++.||||++++++...|.|.++|+.++.  .+   ++-++.|+    .+....-.+             |
T Consensus        58 ~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~----~~~s~~~Sp-------------D  119 (432)
T d1qksa2          58 LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS----IETSKMEGW-------------E  119 (432)
T ss_dssp             EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE----EEECCSTTC-------------T
T ss_pred             EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCC----eEEecccCC-------------C
Confidence            4433 357899999999999999888999999988764  22   23333333    222111110             1


Q ss_pred             ccEEEEEEcCCCCeEEEeecCCCCeEEEEEe
Q 012917          378 YCLCLAIHAPRKGIIEVWQMRTGPRLLTIQC  408 (453)
Q Consensus       378 ~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v  408 (453)
                      .. +|++-+-..+.|.||+..+|.-+..+..
T Consensus       120 G~-~l~vs~~~~~~v~i~d~~t~~~~~~~~~  149 (432)
T d1qksa2         120 DK-YAIAGAYWPPQYVIMDGETLEPKKIQST  149 (432)
T ss_dssp             TT-EEEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred             CC-EEEEEcCCCCeEEEEeCccccceeeecc
Confidence            11 4556666789999999999888777653

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.08  E-value=0.37  Score=41.91  Aligned_cols=48  Identities=8%  Similarity=0.102  Sum_probs=41.3

Q ss_pred             ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEeccccc
Q 012917          303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD  350 (453)
Q Consensus       303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRd  350 (453)
                      +.........++.+|+|++++++...+.+.++|+.++...+..++...
T Consensus        81 ~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (360)
T d1k32a3          81 FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA  128 (360)
T ss_dssp             CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS
T ss_pred             eeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccc
Confidence            334556678999999999999999999999999999999999887654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=93.05  E-value=0.24  Score=43.59  Aligned_cols=83  Identities=8%  Similarity=0.049  Sum_probs=57.0

Q ss_pred             eEEEECCCCCEEEEEcCC----------CcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccE
Q 012917          311 ERLTLSPSGSLAAITDSL----------GRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL  380 (453)
Q Consensus       311 ~~i~lsP~~~laa~tDsl----------GRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l  380 (453)
                      ..+..+|+++++.++-..          .+|.++|+.++..++.++.-+.  ...+.+..                +...
T Consensus       252 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~--~~~~a~sp----------------DG~~  313 (355)
T d2bbkh_         252 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE--IDSINVSQ----------------DEKP  313 (355)
T ss_dssp             SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE--ECEEEECC----------------SSSC
T ss_pred             EEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCC--EEEEEEcC----------------CCCe
Confidence            347889988776654222          4799999999999998875332  22222211                1111


Q ss_pred             EEEEEcCCCCeEEEeecCCCCeEEEEE-ecCC
Q 012917          381 CLAIHAPRKGIIEVWQMRTGPRLLTIQ-CAKG  411 (453)
Q Consensus       381 ~LvIyaprRg~lEVW~~~~G~RV~a~~-v~~~  411 (453)
                      +|++-+...|.|.||++++|+.+..+. ++++
T Consensus       314 ~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~  345 (355)
T d2bbkh_         314 LLYALSTGDKTLYIHDAESGEELRSVNQLGHG  345 (355)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEECCCCSS
T ss_pred             EEEEEECCCCEEEEEECCCCCEEEEEeCcCCC
Confidence            466778889999999999999999886 4443

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.59  E-value=0.45  Score=40.74  Aligned_cols=53  Identities=17%  Similarity=0.204  Sum_probs=40.1

Q ss_pred             CCcEEEEEEEEeCCcEEEEEeccccEEEEEec-CCcEeee-cccCccceeEEEEeec
Q 012917           76 SEYITAIEWLVFEEMRALAVGTSRGYFLVYDL-KGDLVHR-QLIHPGRILKLRVRGS  130 (453)
Q Consensus        76 ~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte-~G~LL~s-Q~lh~~pV~~ik~r~~  130 (453)
                      ...||++.+=  +|-..+++|..+|.|++|+. ++..+.. ...|..+|..|.....
T Consensus       162 ~~~v~~~~~s--~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~  216 (287)
T d1pgua2         162 RAKPSYISIS--PSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPA  216 (287)
T ss_dssp             SSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCC
T ss_pred             CCceeEEEec--cCccccccccccccccceeecccccccccccccccccceeeeccc
Confidence            3567777653  56678999999999999994 4665554 4688999999986543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.15  E-value=0.21  Score=45.42  Aligned_cols=83  Identities=5%  Similarity=-0.062  Sum_probs=56.7

Q ss_pred             eEEEECCCCCEEEEE-c--------CCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEE
Q 012917          311 ERLTLSPSGSLAAIT-D--------SLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC  381 (453)
Q Consensus       311 ~~i~lsP~~~laa~t-D--------slGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~  381 (453)
                      +.++++|+++.+.++ +        ...+|.++|..++..++-+..=+  ....+.+..                |...+
T Consensus       267 ~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~--~~~~~a~sp----------------DG~~~  328 (368)
T d1mdah_         267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQ----------------DGASD  328 (368)
T ss_dssp             SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECC----------------SSSCE
T ss_pred             eeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCC--ceeEEEECC----------------CCCEE
Confidence            347788887655443 2        23479999999999998876432  222232211                11114


Q ss_pred             EEEEcCCCCeEEEeecCCCCeEEEEEecCC
Q 012917          382 LAIHAPRKGIIEVWQMRTGPRLLTIQCAKG  411 (453)
Q Consensus       382 LvIyaprRg~lEVW~~~~G~RV~a~~v~~~  411 (453)
                      |++.....+.|.||+..+|+.+..+.++++
T Consensus       329 ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~  358 (368)
T d1mdah_         329 NYANSAGTEVLDIYDAASDQDQSSVELDKG  358 (368)
T ss_dssp             EEEEETTTTEEEEEESSSCEEEEECCCCSC
T ss_pred             EEEEeCCCCeEEEEECCCCCEEEEEECCCC
Confidence            567778889999999999999999998754

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=89.24  E-value=1.5  Score=38.68  Aligned_cols=76  Identities=8%  Similarity=-0.034  Sum_probs=50.7

Q ss_pred             CCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeec
Q 012917          318 SGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQM  397 (453)
Q Consensus       318 ~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~  397 (453)
                      .+...+.....+.|.++|+.++..++..+.=+.  ...+.+..                |....|++-....|.|.||++
T Consensus       287 ~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~--~~~~a~sp----------------DG~~~l~vt~~~d~~v~v~D~  348 (373)
T d2madh_         287 EQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHD--VDAISVAQ----------------DGGPDLYALSAGTEVLHIYDA  348 (373)
T ss_pred             CCceEEeecCCCeEEEEECCCCcEEEEecCCCC--eeEEEECC----------------CCCEEEEEEeCCCCeEEEEEC
Confidence            344445567778899999999998876653222  22333211                111135566788999999999


Q ss_pred             CCCCeEEEEE-ecCC
Q 012917          398 RTGPRLLTIQ-CAKG  411 (453)
Q Consensus       398 ~~G~RV~a~~-v~~~  411 (453)
                      .+|+++..+. +++.
T Consensus       349 ~tg~~~~~~~~~g~~  363 (373)
T d2madh_         349 GAGDQDQSTVELGSG  363 (373)
T ss_pred             CCCCEEEEECCCCCC
Confidence            9999999886 4443

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.74  E-value=1.5  Score=35.92  Aligned_cols=45  Identities=16%  Similarity=0.221  Sum_probs=35.5

Q ss_pred             EEEEEEeCCcEEEEEeccccEEEEEe-cCCcEeeecccCccceeEEE
Q 012917           81 AIEWLVFEEMRALAVGTSRGYFLVYD-LKGDLVHRQLIHPGRILKLR  126 (453)
Q Consensus        81 s~~~lp~~dw~~I~VG~ssG~vrfyt-e~G~LL~sQ~lh~~pV~~ik  126 (453)
                      .|.|+.+ |-..+|.|-.+|.|++|+ ++|.++..-.-|..+|..|.
T Consensus        17 ~V~c~~~-d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~   62 (293)
T d1p22a2          17 GVYCLQY-DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ   62 (293)
T ss_dssp             CEEEEEC-CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEE
T ss_pred             CEEEEEE-cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeee
Confidence            3445555 556899999999999999 66888877677888988876

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=86.00  E-value=0.92  Score=40.91  Aligned_cols=87  Identities=9%  Similarity=-0.020  Sum_probs=52.7

Q ss_pred             EEEECCCCCEEEEEcC----------CCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEE
Q 012917          312 RLTLSPSGSLAAITDS----------LGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC  381 (453)
Q Consensus       312 ~i~lsP~~~laa~tDs----------lGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~  381 (453)
                      .+.++|+|+.++++..          .+.|.+||..++..+.-...-+.....   +   ... .....-++   |.. +
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~---~---g~~-p~~~a~Sp---DGk-~  137 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS---V---GPR-VHIIGNCA---SSA-C  137 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC---B---SCC-TTSEEECT---TSS-C
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceec---c---cCC-ccceEECC---CCC-E
Confidence            5889999987777543          244999999999887765433221110   0   000 00000000   111 3


Q ss_pred             EEEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917          382 LAIHAPRKGIIEVWQMRTGPRLLTIQCA  409 (453)
Q Consensus       382 LvIyaprRg~lEVW~~~~G~RV~a~~v~  409 (453)
                      |++.....|.+-+|++.++..+..+.++
T Consensus       138 l~va~~~~~~v~~~d~~~~~~~~~~~~~  165 (368)
T d1mdah_         138 LLFFLFGSSAAAGLSVPGASDDQLTKSA  165 (368)
T ss_dssp             EEEEECSSSCEEEEEETTTEEEEEEECS
T ss_pred             EEEEeCCCCeEEEEECCCCcEeEEeecc
Confidence            5567777899999999998888877654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=81.24  E-value=2.6  Score=35.99  Aligned_cols=36  Identities=17%  Similarity=0.157  Sum_probs=28.0

Q ss_pred             cCCCCeeeEEEECCCCCEEEEE-cCCCcEEEEEcCCc
Q 012917          304 KDHPRKGERLTLSPSGSLAAIT-DSLGRILLLDTQAL  339 (453)
Q Consensus       304 ~D~~R~~~~i~lsP~~~laa~t-DslGRV~LiD~~~~  339 (453)
                      .+.......|++||+|+++.++ ...|+|.++|+...
T Consensus        33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~   69 (333)
T d1ri6a_          33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD   69 (333)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCC
Confidence            4566778899999999877555 45799999988654