Citrus Sinensis ID: 012919

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450---
Protein Sequence
MMTGDSGVNGSSSLRVVPSTLLAAEKEEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVENFPNAPPPAKQKAVAPVSPPVSTLDSKKLKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFENVLKKKIEKALSDGGHENGKLKKFGIGST
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHccccHHHHHHHHHHHHHcccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHcccccccccccHHHHHHHHHHccccHHHHHHHHHHccccccccccccHHHHHHHHHHcccccccHHHHHHHccccccccccccHHHHHHHHHHHcccHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccHHHHHHHHHHccccHHHHHHcccEEEcccccHHHHHHHHHHHHcccccHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHHHccHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccccHHHccccccHHcccccHHHHHHHccccccccccccHHHHHHHHHccccHHHHHHHHHHccHHccccHHHccHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHcHHHHHHHHHccccHHHHHHHHHHccHHccccHHHHHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHcHHHHHHHHHccccHHHHHHHcHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHcccEEEccHHHHcHHHHHHHHHccccHHHHHHccHHHcccHHHHccHHHHHHHHccccccHHHHHcccHHHHHHHHHHHHHHHcccccccccccEEEccccc
Coil and Loop (DISEMBL)
mmtgdsgvngssslrvVPSTLLAAEKEEAKAVLTLFLKKqglskgvaartinksdLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVenfpnapppakqkavapvsppvstldskklKAISRVSeldssgdlrpQILYLIELGMDLEKIKLITrrfpafsyyslegkiKPVVEFLLdlgipkaqiptilgkrpqlcgislsenliptmtflenlgvdktQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVltrcpniiSYSIEEKLRPTAEYFRSLGVDVSVLLQrcpqslgcsieanlKPVTEFFLERGFTVEEIGTMISRFGalytfsltenlipkweffltmdydkselvkfpqyfgysleerikpryarvKVHGVKLLLNQVLSLSGSNFENVLKKKIEKALsdgghengklkkfgigst
Flexible Loop (DISEMBL)
mmtgdsgvngssslrvVPSTLLAAEKEEAKAVLTLFlkkqglskgvAARTINKSDLFIDHLVSrlhsvhksrylvgrelttleIRDALTPYLESLLEEYGNVLVDLVENFPNAPPPAkqkavapvsppvstldskklkaisrvseldssgdlrpQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFpavltysrqKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFENVLKKKIEkalsdgghengklkkfgigst
Low Complexity Region (SEG)
MMTGDSGVNGSSSLRVVPStllaaekeeakavltlFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVENFpnapppakqkavapvsppvsTLDSKKLKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFENVLKKKIEKALSDGGHENGKLKKFGIGST
Disordered region (IsUnstruct)
***************************EAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVENF*****************************************LRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFENVLK*************************
Disordered Region (DISOPRED)
**************RVVPSTLLAAEKEEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVENFPNAPPPAKQKAVAPVSPPVSTLDS**L******SE*DSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFENVLKKKIEKALSD**HENGKL*KFGI***
Disordered Region (DISEMBL)
***********SSLRVVPSTLLAAEKEEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVENFPNAP*********************KLKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFENVLKKKIEKALSDGGHENGKLKKFGIGST
Disordered Region (DISPRO)
**************RVVPSTLLAAEKEEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVENFPNAPPPAKQKAVAPVSPPVSTLDSKKLKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFENVLKKKIEKALSDGGHENGKLK*F*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMTGDSGVNGSSSLRVVPSTLLAAEKEEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVENFPNAPPPAKQKAVAPVSPPVSTLDSKKLKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFENVLKKKIEKALSDGGHENGKLKKFGIGST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	453	2.2.26 [Sep-21-2011]
Q49AM1	385	mTERF domain-containing p	yes	no	0.560	0.659	0.265	1e-05
Q96E29	417	mTERF domain-containing p	no	no	0.395	0.429	0.241	1e-05
Q8R3J4	412	mTERF domain-containing p	yes	no	0.434	0.478	0.232	3e-05
Q6P6Q6	409	mTERF domain-containing p	yes	no	0.437	0.484	0.228	0.0002
Q5R6G1	385	mTERF domain-containing p	no	no	0.560	0.659	0.255	0.0003
Q5ZJC8	405	mTERF domain-containing p	yes	no	0.390	0.437	0.226	0.0004

>sp|Q49AM1|MTER3_HUMAN mTERF domain-containing protein 3, mitochondrial OS=Homo sapiens GN=MTERFD3 PE=1 SV=2

 Score = 52.0 bits (123), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 126/282 (44%), Gaps = 28/282 (9%)

Query: 137 LKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLL 196
           L   +  ++  SS +    +  L +  +D+ KI    RR   +     E  ++ +   L 
Sbjct: 30  LACFTYTTDKQSSKENTRTVEKLYKCSVDIRKI----RRLKGWVLLEDETYVEEIANILQ 85

Query: 197 DLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGV-DKTQWAKVIQRFP-AVLTY 254
           +LG  +  + +IL + P+   I  S   + T   L  L   ++ +  K+I++FP +  T 
Sbjct: 86  ELGADETAVASILERCPE--AIVCSPTAVNTQRKLWQLVCKNEEELIKLIEQFPESFFTI 143

Query: 255 SRQK-VKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEK---LRPTAEYFRSLG---- 306
             Q+  K  V F  E+GL    I ++LT  PN+    +E+    +R   E +  +G    
Sbjct: 144 KDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNPVEKNKQMVRILQESYLDVGGSEA 203

Query: 307 ---VDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRF-GALYTF---S 359
              V +  LL + P  L  S  A +K   EF  E+GFT  EI  ++S+  G L+     S
Sbjct: 204 NMKVWLLKLLSQNPFILLNSPTA-IKETLEFLQEQGFTSFEILQLLSKLKGFLFQLCPRS 262

Query: 360 LTENLIPKWEFFLTMDYDKSELV-KFPQYFGYS---LEERIK 397
           +  ++      F   D+D  +LV K P    YS   LEER++
Sbjct: 263 IQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVPVLEERMQ 304

Binds promoter DNA and regulates mitochondrial transcription. Required for normal levels of transcription, both for mRNA and tRNA. Required for normal mitochondrial protein synthesis, assembly of respiratory complexes and normal mitochondrial function.
Homo sapiens (taxid: 9606)

>sp|Q96E29|MTER1_HUMAN mTERF domain-containing protein 1, mitochondrial OS=Homo sapiens GN=MTERFD1 PE=1 SV=2

 Score = 52.0 bits (123), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 95/195 (48%), Gaps = 16/195 (8%)

Query: 215 LCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAE 274
           L  +   +++   + FL+++G++  Q    + +  A+ +   + +K  V +L+    S  
Sbjct: 179 LLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKA 238

Query: 275 SIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSV-----LLQRCPQSLGCSIEANLK 329
            + +++ + P ++++S+ E+L     +F+   +++SV     L+ R P+ L  S+E   +
Sbjct: 239 DVAQMVRKAPFLLNFSV-ERLDNRLGFFQK-ELELSVKKTRDLVVRLPRLLTGSLEPVKE 296

Query: 330 PVTEFFLERGFTVEEIGTMISRFGALYT---FSLTENLIPKWEFFLT-MDYDKSELVKFP 385
            +  + LE GF   EI  MI+R   + T     LTE     ++F    M      +VKFP
Sbjct: 297 NMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTET----FDFVHNVMSIPHHIIVKFP 352

Query: 386 QYFGYSLEERIKPRY 400
           Q F   L  ++K R+
Sbjct: 353 QVFNTRL-FKVKERH 366

Binds promoter DNA and regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.

Homo sapiens (taxid: 9606)

>sp|Q8R3J4|MTER1_MOUSE mTERF domain-containing protein 1, mitochondrial OS=Mus musculus GN=Mterfd1 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 94/211 (44%), Gaps = 14/211 (6%)

Query: 195 LLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTY 254
           L+ LG+  ++I         L  +   +++   + FL++LG++  Q    + +  A+ + 
Sbjct: 154 LVQLGVDLSKIEKHPDAANLLLRLDFEKHIKQILLFLKDLGLEDNQLGPFLTKNYAIFSE 213

Query: 255 SRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSV--- 311
             + +K  V +L     S   I +++   P ++S+S+E        + + L ++V     
Sbjct: 214 DLENLKTRVAYLQSKNFSKTDIARMVKNAPFLLSFSVERLDNRLGFFQKELELNVKKTRD 273

Query: 312 LLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFF 371
           L+ R P+ L  S+E   + +  + LE GF   EI  M+ +   +    LT N     E F
Sbjct: 274 LVVRLPRLLTGSLEPVKENMKVYHLELGFKHNEIQHMVIKIPKM----LTANKRKLTEIF 329

Query: 372 ----LTMDYDKSELVKFPQYFG---YSLEER 395
                 M+     +VKFPQ F    + ++ER
Sbjct: 330 DYVHNVMNIPHHIIVKFPQLFNTRVFKIKER 360

Binds promoter DNA (By similarity). Regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.

Mus musculus (taxid: 10090)

>sp|Q6P6Q6|MTER1_RAT mTERF domain-containing protein 1, mitochondrial OS=Rattus norvegicus GN=Mterfd1 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 100/210 (47%), Gaps = 12/210 (5%)

Query: 195 LLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTY 254
           L+ LG+  ++I         L  ++  +++   + FL++LG++  Q    + +  A+ + 
Sbjct: 151 LVQLGVDLSKIEKHPDVANLLLRLNFEKDIKQILLFLKDLGLEDNQLGPFLTKNYAIFSE 210

Query: 255 SRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSV--- 311
             + +K  V +L     S   I  ++   P ++S+S+ E+L     +F+   +++SV   
Sbjct: 211 DLENLKTRVAYLQSKNFSKTDIACMVKNAPFLLSFSV-ERLDNRLGFFQK-ELELSVKKT 268

Query: 312 --LLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWE 369
             L+ R P+ L  S+E   + +  + LE GF   EI  M+++   + T +    L   ++
Sbjct: 269 RDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMVTKIPKMLTAN-KRKLTETFD 327

Query: 370 FFLT-MDYDKSELVKFPQYFG---YSLEER 395
           +    M+     +VKFPQ F    + ++ER
Sbjct: 328 YVHNVMNIPHHIIVKFPQVFNTRVFKIKER 357

Binds promoter DNA and regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.

Rattus norvegicus (taxid: 10116)

>sp|Q5R6G1|MTER3_PONAB mTERF domain-containing protein 3, mitochondrial OS=Pongo abelii GN=MTERFD3 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 125/282 (44%), Gaps = 28/282 (9%)

Query: 137 LKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLL 196
           L   +  ++  SS +    +  L +  +D+ KI    RR   +     E  ++ +   L 
Sbjct: 30  LACFTYTTDRQSSKENTRTVEKLYKCSVDIRKI----RRLKGWVLLEDETYVEEIANILQ 85

Query: 197 DLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGV-DKTQWAKVIQRFP-AVLTY 254
           +LG  +  +  IL + P+   I      + T   L  L   ++ +  K+I++FP +  T 
Sbjct: 86  ELGADETAVANILERCPE--AIVCRPTAVNTQRKLWQLVCKNEEELIKLIEQFPESFFTI 143

Query: 255 SRQKVKQ-TVDFLYEMGLSAESIGKVLTRCPNIISYSIEEK---LRPTAEYFRSLG---- 306
             Q+ ++  V F  E+GL    I ++LT   N+    +E+    +R   E + ++G    
Sbjct: 144 KDQENQKLNVQFFQELGLKNVVISRLLTAASNVFHNPVEKNKQMVRILQESYLNVGGSEA 203

Query: 307 ---VDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRF-GALYTF---S 359
              V +  LL + P  L  S  A +K   EF  E+GFT  EI  ++S+  G L+     S
Sbjct: 204 NMKVWLLKLLSQNPFILLNSPTA-IKETLEFLQEQGFTSFEILQLLSKLKGFLFQLCPRS 262

Query: 360 LTENLIPKWEFFLTMDYDKSELV-KFPQYFGYS---LEERIK 397
           +  ++      F   D+D  +LV K P    YS   LEER++
Sbjct: 263 IQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVPVLEERMQ 304

Binds promoter DNA and regulates mitochondrial transcription. Required for normal levels of transcription, both for mRNA and tRNA. Required for normal mitochondrial protein synthesis, assembly of respiratory complexes and normal mitochondrial function.

Pongo abelii (taxid: 9601)

>sp|Q5ZJC8|MTER1_CHICK mTERF domain-containing protein 1, mitochondrial OS=Gallus gallus GN=MTERFD1 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 89/194 (45%), Gaps = 17/194 (8%)

Query: 106 LVENFPNAPPPA------KQKAVAPVSPPVSTLDSKKLKAISRVSELDSSGDLRPQILYL 159
           L E++ + PP +      +++AV  ++ P+    S  L+     SE          +  L
Sbjct: 97  LCEDWDDVPPSSALEEISEEEAVKIIADPLLPPQSSTLRDYVDHSE---------TLTKL 147

Query: 160 IELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGIS 219
           + LG+DL +++   +          E  I  ++ FL D+GI   Q+   L K P + G  
Sbjct: 148 VHLGVDLSQVEKRQKAGQLLLTLDFEKDITKILLFLKDVGIEDNQLGPFLTKNPYILGEE 207

Query: 220 LSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFL-YEMGLSAESIGK 278
           L E L   + +L++      +  +++ R P +L +S +++   + F   E+GLS +    
Sbjct: 208 L-EALETRVAYLKSKKFGNAEITQMVSRAPYLLLFSVERLDNRLGFFKNELGLSVKKTKD 266

Query: 279 VLTRCPNIISYSIE 292
           ++ R P +++  +E
Sbjct: 267 LVIRFPRLLTGKLE 280

Binds promoter DNA and regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	453
255536969	436	conserved hypothetical protein [Ricinus	0.942	0.979	0.811	0.0
356511822	480	PREDICTED: uncharacterized protein LOC10	0.940	0.887	0.745	0.0
356511824	471	PREDICTED: uncharacterized protein LOC10	0.944	0.908	0.742	0.0
359488599	460	PREDICTED: uncharacterized protein LOC10	0.955	0.941	0.728	0.0
296090243	464	unnamed protein product [Vitis vinifera]	0.929	0.907	0.75	1e-180
356573958	581	PREDICTED: uncharacterized protein LOC10	0.940	0.733	0.729	1e-180
357449019	567	mTERF domain-containing protein [Medicag	0.953	0.761	0.697	1e-173
449487899	469	PREDICTED: uncharacterized protein LOC10	0.949	0.916	0.722	1e-171
449448552	566	PREDICTED: uncharacterized protein LOC10	0.949	0.759	0.722	1e-171
297804838	498	hypothetical protein ARALYDRAFT_915404 [	0.905	0.823	0.716	1e-168

>gi|255536969|ref|XP_002509551.1| conserved hypothetical protein [Ricinus communis] gi|223549450|gb|EEF50938.1| conserved hypothetical protein [Ricinus communis]

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/429 (81%), Positives = 378/429 (88%), Gaps = 2/429 (0%)

Query: 9   NGSSSLRVVPSTLLAAEKEEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSV 68
           NGS  LRVVP TLLAAEKEEAKAVLTLFLKKQGLS  VAART   SDLFIDHLV+RLHSV
Sbjct: 5   NGSVGLRVVPPTLLAAEKEEAKAVLTLFLKKQGLSNAVAARTTKSSDLFIDHLVARLHSV 64

Query: 69  HKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVENFPNAPPPAKQKAVAPVSPP 128
           HKSRYLVGRELTTLEIRDAL PYLESLLEE+G+VLVDLVENF N  PP K K VA V+PP
Sbjct: 65  HKSRYLVGRELTTLEIRDALIPYLESLLEEHGSVLVDLVENFSN--PPDKGKPVALVTPP 122

Query: 129 VSTLDSKKLKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKI 188
             T++SKKLKA+SRVSE   +G L P ILYL++LGMDLE+IK IT RFPAF+YYSLEGKI
Sbjct: 123 KVTVNSKKLKAVSRVSETGPAGQLPPHILYLMDLGMDLEQIKGITSRFPAFAYYSLEGKI 182

Query: 189 KPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRF 248
           KPVVEFLLDLGI K  +PTI  +RPQLCGISLSENL PTMTFLENLGVDK QWAKVI RF
Sbjct: 183 KPVVEFLLDLGIRKTDLPTIFVRRPQLCGISLSENLKPTMTFLENLGVDKRQWAKVIYRF 242

Query: 249 PAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVD 308
           PA+LTYSRQKV+ TVDFL EMGLSAESIGK+LTRCPNIISYS+ +KLRPTAEYFRSLGVD
Sbjct: 243 PALLTYSRQKVELTVDFLNEMGLSAESIGKILTRCPNIISYSVNDKLRPTAEYFRSLGVD 302

Query: 309 VSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKW 368
           V+VLL RCPQ+ G S+EANLKPVTEFFLERG+++EEIGTMI R+GALYTFSL ENLIPKW
Sbjct: 303 VAVLLYRCPQTFGLSLEANLKPVTEFFLERGYSIEEIGTMIQRYGALYTFSLAENLIPKW 362

Query: 369 EFFLTMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFENVLK 428
           +FFLTMDY K ELVKFPQYFGYSLEERIKPRYA VK  GVKLLLNQVLSLS  NF+ VLK
Sbjct: 363 DFFLTMDYSKEELVKFPQYFGYSLEERIKPRYALVKEAGVKLLLNQVLSLSYCNFDKVLK 422

Query: 429 KKIEKALSD 437
           KKI+K LS+
Sbjct: 423 KKIQKMLSE 431

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511822|ref|XP_003524621.1| PREDICTED: uncharacterized protein LOC100781900 isoform 1 [Glycine max]

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/429 (74%), Positives = 365/429 (85%), Gaps = 3/429 (0%)

Query: 6   SGVNGSSSLRVVPSTLLAAEKEEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRL 65
           SG++GS +L+VV  TLL AEKEEAKAVLTLFLKKQGLS  +AART  KSD FIDHLVSRL
Sbjct: 50  SGIDGSLNLKVVSPTLLVAEKEEAKAVLTLFLKKQGLSNAIAARTSKKSDHFIDHLVSRL 109

Query: 66  HSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVENFPNAPPPAKQKAVAPV 125
           HS HKS YL GRELTTLEIRDAL PYLESL EE+G++LVD+VEN+PN  PP K K+   V
Sbjct: 110 HSKHKSWYLAGRELTTLEIRDALIPYLESLFEEHGDILVDVVENYPN--PPGKDKSAVLV 167

Query: 126 SPPVSTLDSKKLKAISRVSELD-SSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSL 184
            P    LDSKKLKA+SRVSE D   G+LRP I+YL+ELGMD+E+I+ ITRRFP+F+YYSL
Sbjct: 168 PPSNPVLDSKKLKAVSRVSETDPDGGNLRPHIVYLMELGMDIEQIRSITRRFPSFAYYSL 227

Query: 185 EGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKV 244
           EGKIKPVVEF L+LG+PK  IPTIL KRPQLCGISLSENL PTM F E+LGVDK QW KV
Sbjct: 228 EGKIKPVVEFFLELGVPKENIPTILTKRPQLCGISLSENLKPTMKFFESLGVDKNQWPKV 287

Query: 245 IQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRS 304
           I RFPA+LTYSR KV +++DFL E+GLS E IGK+LTRCPNI+SYS+E+ LRPTA+YFRS
Sbjct: 288 IYRFPALLTYSRPKVMESIDFLLELGLSEEGIGKILTRCPNIVSYSVEDNLRPTAKYFRS 347

Query: 305 LGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENL 364
           LGVDV +LL RCPQ+ G SIE NLKPVTEFFLERG+T+EEIGTMISR+GALYTFSLTENL
Sbjct: 348 LGVDVGILLFRCPQNFGLSIETNLKPVTEFFLERGYTLEEIGTMISRYGALYTFSLTENL 407

Query: 365 IPKWEFFLTMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFE 424
           IPKW+FFLT  Y KSELVKFPQYFGY+LEERIKPR+  +   GVKLLLNQVLSLS SNF+
Sbjct: 408 IPKWDFFLTTGYPKSELVKFPQYFGYNLEERIKPRFEIMTKSGVKLLLNQVLSLSSSNFD 467

Query: 425 NVLKKKIEK 433
             LKKK++K
Sbjct: 468 EALKKKMKK 476

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511824|ref|XP_003524622.1| PREDICTED: uncharacterized protein LOC100781900 isoform 2 [Glycine max]

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/431 (74%), Positives = 365/431 (84%), Gaps = 3/431 (0%)

Query: 4   GDSGVNGSSSLRVVPSTLLAAEKEEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVS 63
             SG++GS +L+VV  TLL AEKEEAKAVLTLFLKKQGLS  +AART  KSD FIDHLVS
Sbjct: 39  AKSGIDGSLNLKVVSPTLLVAEKEEAKAVLTLFLKKQGLSNAIAARTSKKSDHFIDHLVS 98

Query: 64  RLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVENFPNAPPPAKQKAVA 123
           RLHS HKS YL GRELTTLEIRDAL PYLESL EE+G++LVD+VEN+PN  PP K K+  
Sbjct: 99  RLHSKHKSWYLAGRELTTLEIRDALIPYLESLFEEHGDILVDVVENYPN--PPGKDKSAV 156

Query: 124 PVSPPVSTLDSKKLKAISRVSELD-SSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYY 182
            V P    LDSKKLKA+SRVSE D   G+LRP I+YL+ELGMD+E+I+ ITRRFP+F+YY
Sbjct: 157 LVPPSNPVLDSKKLKAVSRVSETDPDGGNLRPHIVYLMELGMDIEQIRSITRRFPSFAYY 216

Query: 183 SLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWA 242
           SLEGKIKPVVEF L+LG+PK  IPTIL KRPQLCGISLSENL PTM F E+LGVDK QW 
Sbjct: 217 SLEGKIKPVVEFFLELGVPKENIPTILTKRPQLCGISLSENLKPTMKFFESLGVDKNQWP 276

Query: 243 KVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYF 302
           KVI RFPA+LTYSR KV +++DFL E+GLS E IGK+LTRCPNI+SYS+E+ LRPTA+YF
Sbjct: 277 KVIYRFPALLTYSRPKVMESIDFLLELGLSEEGIGKILTRCPNIVSYSVEDNLRPTAKYF 336

Query: 303 RSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTE 362
           RSLGVDV +LL RCPQ+ G SIE NLKPVTEFFLERG+T+EEIGTMISR+GALYTFSLTE
Sbjct: 337 RSLGVDVGILLFRCPQNFGLSIETNLKPVTEFFLERGYTLEEIGTMISRYGALYTFSLTE 396

Query: 363 NLIPKWEFFLTMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSN 422
           NLIPKW+FFLT  Y KSELVKFPQYFGY+LEERIKPR+  +   GVKLLLNQVLSLS SN
Sbjct: 397 NLIPKWDFFLTTGYPKSELVKFPQYFGYNLEERIKPRFEIMTKSGVKLLLNQVLSLSSSN 456

Query: 423 FENVLKKKIEK 433
           F+  LKKK++K
Sbjct: 457 FDEALKKKMKK 467

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488599|ref|XP_003633786.1| PREDICTED: uncharacterized protein LOC100262724 [Vitis vinifera]

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/457 (72%), Positives = 383/457 (83%), Gaps = 24/457 (5%)

Query: 3   TGDSGVNGSS-SLRVVPSTLLAAEKEEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHL 61
           + +SGV+GSS SLRVVP +LLAAEKEEAKAVL+LFLKKQGLS  VAARTINKS+LFIDHL
Sbjct: 5   SAESGVDGSSISLRVVPPSLLAAEKEEAKAVLSLFLKKQGLSNAVAARTINKSELFIDHL 64

Query: 62  VSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVENFPNAPPPAKQKA 121
           VSRLHSVHKSRYLVGRELTTLEIRDAL PYLE+L EE+G++LVD VENFPN P   K+  
Sbjct: 65  VSRLHSVHKSRYLVGRELTTLEIRDALIPYLETLFEEHGDILVDAVENFPNQP--DKEIP 122

Query: 122 VAPVSPPVST--------------------LDSKKLKAISRVSELDSSGDLRPQILYLIE 161
           VAPVS    +                    LDSKK+KA++RVSE+  SG+L P ILYL+E
Sbjct: 123 VAPVSSSSLSSSSSSSSLSSSSSSSSSNPKLDSKKIKAMARVSEVGPSGELPPNILYLLE 182

Query: 162 LGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLS 221
           LG++L++IK +TRRFPAF YYSLEGKI PVV+FLLDLG+PK+ IP IL KRPQLCG+SLS
Sbjct: 183 LGLELDQIKAMTRRFPAFPYYSLEGKIMPVVQFLLDLGVPKSGIPMILYKRPQLCGVSLS 242

Query: 222 ENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLT 281
           EN+IPTM FLENLGVDK QWAKVI RFP  LTYSRQKVK TVDFL EMGLSAESIGKVLT
Sbjct: 243 ENIIPTMAFLENLGVDKKQWAKVIHRFPGFLTYSRQKVKATVDFLEEMGLSAESIGKVLT 302

Query: 282 RCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFT 341
           RCPNIISYS+E+KLRPTAEYFRSLGVDV++LL R P + G SIEANLKP+TEFFLE+GF+
Sbjct: 303 RCPNIISYSVEDKLRPTAEYFRSLGVDVAILLHRSPPTFGLSIEANLKPITEFFLEKGFS 362

Query: 342 VEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSELVKFPQYFGYSLEERIKPRYA 401
           +EE+ TMISR+G LYTFSL ++L PKWEFFLTMDY ++ELVKFPQYFGYSLEERIKPRYA
Sbjct: 363 IEEVSTMISRYGPLYTFSLADSLGPKWEFFLTMDYPRTELVKFPQYFGYSLEERIKPRYA 422

Query: 402 RVKVHGVKLLLNQVLSLSGSNFENVLKKKIEKALSDG 438
            V+  GV+LLLNQVLSLS S F+  LK+K++K + DG
Sbjct: 423 TVRESGVRLLLNQVLSLSESEFDKALKRKMKK-MHDG 458

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090243|emb|CBI40062.3| unnamed protein product [Vitis vinifera]

 Score =  638 bits (1645), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 327/436 (75%), Positives = 375/436 (86%), Gaps = 15/436 (3%)

Query: 4   GDSGVNGSS-SLRVVPSTLLAAEKEEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLV 62
            +SGV+GSS SLRVVP +LLAAEKEEAKAVL+LFLKKQGLS  VAARTINKS+LFIDHLV
Sbjct: 41  AESGVDGSSISLRVVPPSLLAAEKEEAKAVLSLFLKKQGLSNAVAARTINKSELFIDHLV 100

Query: 63  SRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVENFPNAPPPAKQKAV 122
           SRLHSVHKSRYLVGRELTTLEIRDAL PYLE+L EE+G++LVD VENFPN P   K+  V
Sbjct: 101 SRLHSVHKSRYLVGRELTTLEIRDALIPYLETLFEEHGDILVDAVENFPNQP--DKEIPV 158

Query: 123 APVSPPVSTLDSKKLKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYY 182
           AP           K+KA++RVSE+  SG+L P ILYL+ELG++L++IK +TRRFPAF YY
Sbjct: 159 AP-----------KIKAMARVSEVGPSGELPPNILYLLELGLELDQIKAMTRRFPAFPYY 207

Query: 183 SLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWA 242
           SLEGKI PVV+FLLDLG+PK+ IP IL KRPQLCG+SLSEN+IPTM FLENLGVDK QWA
Sbjct: 208 SLEGKIMPVVQFLLDLGVPKSGIPMILYKRPQLCGVSLSENIIPTMAFLENLGVDKKQWA 267

Query: 243 KVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYF 302
           KVI RFP  LTYSRQKVK TVDFL EMGLSAESIGKVLTRCPNIISYS+E+KLRPTAEYF
Sbjct: 268 KVIHRFPGFLTYSRQKVKATVDFLEEMGLSAESIGKVLTRCPNIISYSVEDKLRPTAEYF 327

Query: 303 RSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTE 362
           RSLGVDV++LL R P + G SIEANLKP+TEFFLE+GF++EE+ TMISR+G LYTFSL +
Sbjct: 328 RSLGVDVAILLHRSPPTFGLSIEANLKPITEFFLEKGFSIEEVSTMISRYGPLYTFSLAD 387

Query: 363 NLIPKWEFFLTMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSN 422
           +L PKWEFFLTMDY ++ELVKFPQYFGYSLEERIKPRYA V+  GV+LLLNQVLSLS S 
Sbjct: 388 SLGPKWEFFLTMDYPRTELVKFPQYFGYSLEERIKPRYATVRESGVRLLLNQVLSLSESE 447

Query: 423 FENVLKKKIEKALSDG 438
           F+  LK+K++K + DG
Sbjct: 448 FDKALKRKMKK-MHDG 462

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573958|ref|XP_003555121.1| PREDICTED: uncharacterized protein LOC100775277 [Glycine max]

 Score =  636 bits (1641), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 313/429 (72%), Positives = 361/429 (84%), Gaps = 3/429 (0%)

Query: 6   SGVNGSSSLRVVPSTLLAAEKEEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRL 65
           SG +GS +L VV  TLL AEKEEAKAVLTLFLKKQGLS  +A RT  KSD FIDHLVSRL
Sbjct: 151 SGTDGSLNLEVVSPTLLVAEKEEAKAVLTLFLKKQGLSNAIATRTSKKSDHFIDHLVSRL 210

Query: 66  HSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVENFPNAPPPAKQKAVAPV 125
           HS HKS YL GRELTTLEIRD L PYLESL EE+G++LV++VEN+PN  PP K K+  P+
Sbjct: 211 HSKHKSWYLAGRELTTLEIRDTLIPYLESLFEEHGDILVNVVENYPN--PPGKDKSAVPI 268

Query: 126 SPPVSTLDSKKLKAISRVSELD-SSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSL 184
            P     DSKKLKA+SRVSE D   G+LRP I+YL++LGMD+E+I+ ITRRFP+F+YYSL
Sbjct: 269 PPSNPVSDSKKLKAVSRVSETDPDGGNLRPHIVYLMDLGMDIEQIRSITRRFPSFAYYSL 328

Query: 185 EGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKV 244
           EGKIKPVVEF L+LG+PK  I TIL KRPQLCGISLSENL PTM F E+LGVDK QW KV
Sbjct: 329 EGKIKPVVEFFLELGVPKENILTILTKRPQLCGISLSENLKPTMKFFESLGVDKNQWPKV 388

Query: 245 IQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRS 304
           I RFPA+LTYSR KV +++DFL E+GLS ESIGK+LTRCPNI+SYS+E+ LRPTA+YF S
Sbjct: 389 IYRFPALLTYSRPKVMESIDFLLELGLSEESIGKILTRCPNIVSYSVEDNLRPTAKYFHS 448

Query: 305 LGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENL 364
           LGV+V VLL RCPQ+ G SIE NLKP TEFFLERG+T+EEIGTMISR+GALYTFSLTENL
Sbjct: 449 LGVEVGVLLFRCPQNFGLSIENNLKPATEFFLERGYTLEEIGTMISRYGALYTFSLTENL 508

Query: 365 IPKWEFFLTMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFE 424
           IPKW+FFLT  Y KSELVKFPQYFGY+LEER+KPR+  +K +GVKLLLNQVLSLS SNF+
Sbjct: 509 IPKWDFFLTTGYPKSELVKFPQYFGYNLEERVKPRFTIMKKYGVKLLLNQVLSLSSSNFD 568

Query: 425 NVLKKKIEK 433
             LKKK++K
Sbjct: 569 EALKKKMKK 577

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357449019|ref|XP_003594785.1| mTERF domain-containing protein [Medicago truncatula] gi|355483833|gb|AES65036.1| mTERF domain-containing protein [Medicago truncatula]

 Score =  615 bits (1587), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 302/433 (69%), Positives = 359/433 (82%), Gaps = 1/433 (0%)

Query: 6   SGVNGSSSLRVVPSTLLAAEKEEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRL 65
           S  + S S++++P TLLAAEKEEAKAVLTLFLKK+GLS   AARTINKSD FIDHL+S+L
Sbjct: 135 SDTDESLSVKLLPPTLLAAEKEEAKAVLTLFLKKRGLSNANAARTINKSDPFIDHLLSKL 194

Query: 66  HSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVENFPNAPPPAKQKAVAPV 125
           HS HK+ YL GRELTTLEIRDAL  YLESL EE+G +LVD VEN+PN P   K  A  P 
Sbjct: 195 HSKHKTWYLSGRELTTLEIRDALISYLESLYEEHGEILVDAVENYPNPPVKDKSDAPIPP 254

Query: 126 SPPVSTLDSKKLKAISRVSELD-SSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSL 184
             P   +DSKK+KA+SRVS +D + G+LRP I YL+ELGM+ ++++ I RRFPAF+YYSL
Sbjct: 255 PNPSPAVDSKKVKAVSRVSGIDPAEGNLRPHIAYLMELGMNTDQVRSIMRRFPAFAYYSL 314

Query: 185 EGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKV 244
           EGKIKPVVEF L+LG+PK +I  IL KRPQLCGISLS+NL PTM F E+LGVDK QWAKV
Sbjct: 315 EGKIKPVVEFFLELGVPKEKIIIILTKRPQLCGISLSKNLKPTMKFFESLGVDKEQWAKV 374

Query: 245 IQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRS 304
           I RFPA+LTYS QK+ +++DFL E G+S E+IGK+LTRCP I+SYS+E+ LRPTA YFRS
Sbjct: 375 IYRFPALLTYSTQKINESLDFLREFGVSEENIGKILTRCPTIVSYSVEDNLRPTAMYFRS 434

Query: 305 LGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENL 364
           LGVDV +LL  CPQ+ G SIEAN+KPVT+FFLERG+T+EEIG MI R+G LYTFSLTENL
Sbjct: 435 LGVDVGLLLFNCPQNFGLSIEANIKPVTQFFLERGYTMEEIGIMIKRYGMLYTFSLTENL 494

Query: 365 IPKWEFFLTMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFE 424
           +PKW++FLTMDY KSELVKFPQ+FGYSLE+RIKPRY RVK+ GV+LLLNQVLSLS SNFE
Sbjct: 495 MPKWDYFLTMDYPKSELVKFPQFFGYSLEQRIKPRYTRVKISGVRLLLNQVLSLSSSNFE 554

Query: 425 NVLKKKIEKALSD 437
            +L+KKI K   D
Sbjct: 555 EILRKKIMKMQVD 567

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487899|ref|XP_004157856.1| PREDICTED: uncharacterized protein LOC101228690 [Cucumis sativus]

 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 312/432 (72%), Positives = 365/432 (84%), Gaps = 2/432 (0%)

Query: 4   GDSGVNGSSSLRVVPSTLLAAEKEEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVS 63
            DS ++GS++L+VV   LL AEKEEAKAVLTLFLKKQGLS  +AARTINKSD FIDHL+ 
Sbjct: 37  SDSEIDGSANLKVVSPALLTAEKEEAKAVLTLFLKKQGLSNAIAARTINKSDSFIDHLLL 96

Query: 64  RLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVENFPNAPPPAKQKAVA 123
           RLH +HKSRYLVGRELTTLEIRDAL PYLESL EE+G  LV  VENFP+  P  K+K   
Sbjct: 97  RLHLIHKSRYLVGRELTTLEIRDALNPYLESLFEEHGTHLVHAVENFPS--PSIKEKTAT 154

Query: 124 PVSPPVSTLDSKKLKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYS 183
           PV    ST+D+KKLKAISRVSEL  +GDLRP+ILYLIE G++L++IK ITRRFP+F+YYS
Sbjct: 155 PVPVSNSTIDTKKLKAISRVSELGPTGDLRPEILYLIEHGLNLDQIKEITRRFPSFAYYS 214

Query: 184 LEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAK 243
           LEGKIKPV+EF LDLG+PK+ IP IL KRPQLCGISLSENL PTM FLENLGVDK +WAK
Sbjct: 215 LEGKIKPVIEFFLDLGVPKSDIPIILYKRPQLCGISLSENLKPTMKFLENLGVDKKKWAK 274

Query: 244 VIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFR 303
           VI RFPA+LTYS+QKV+ T+ FLYE+GLS E +GKVLTRCPNI SYS+EEKLRPTAEYF 
Sbjct: 275 VIYRFPAILTYSKQKVETTISFLYELGLSEERVGKVLTRCPNITSYSVEEKLRPTAEYFH 334

Query: 304 SLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTEN 363
           +LGVDV+VLL RCPQ+ G SIEANLKPVT+FFLERG+++E++GTM SR+ ALY+FSL +N
Sbjct: 335 TLGVDVAVLLYRCPQTFGLSIEANLKPVTQFFLERGYSMEDVGTMTSRYAALYSFSLADN 394

Query: 364 LIPKWEFFLTMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNF 423
           L+PKW+FFLTM Y K+EL+KFPQYFGYSLE RIKPRYA +K   V LLLNQ+L+LS SNF
Sbjct: 395 LVPKWDFFLTMGYSKAELIKFPQYFGYSLEGRIKPRYAIMKNSQVMLLLNQLLTLSESNF 454

Query: 424 ENVLKKKIEKAL 435
              + KK+ K L
Sbjct: 455 NKAVIKKVNKLL 466

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448552|ref|XP_004142030.1| PREDICTED: uncharacterized protein LOC101203240 [Cucumis sativus]

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 312/432 (72%), Positives = 365/432 (84%), Gaps = 2/432 (0%)

Query: 4   GDSGVNGSSSLRVVPSTLLAAEKEEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVS 63
            DS ++GS++L+VV   LL AEKEEAKAVLTLFLKKQGLS  +AARTINKSD FIDHL+ 
Sbjct: 134 SDSEIDGSANLKVVSPALLTAEKEEAKAVLTLFLKKQGLSNAIAARTINKSDSFIDHLLL 193

Query: 64  RLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVENFPNAPPPAKQKAVA 123
           RLH +HKSRYLVGRELTTLEIRDAL PYLESL EE+G  LV  VENFP+  P  K+K   
Sbjct: 194 RLHLIHKSRYLVGRELTTLEIRDALNPYLESLFEEHGTHLVHAVENFPS--PSIKEKTAT 251

Query: 124 PVSPPVSTLDSKKLKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYS 183
           PV    ST+D+KKLKAISRVSEL  +GDLRP+ILYLIE G++L++IK ITRRFP+F+YYS
Sbjct: 252 PVPVSNSTIDTKKLKAISRVSELGPTGDLRPEILYLIEHGLNLDQIKEITRRFPSFAYYS 311

Query: 184 LEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAK 243
           LEGKIKPV+EF LDLG+PK+ IP IL KRPQLCGISLSENL PTM FLENLGVDK +WAK
Sbjct: 312 LEGKIKPVIEFFLDLGVPKSDIPIILYKRPQLCGISLSENLKPTMKFLENLGVDKKKWAK 371

Query: 244 VIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFR 303
           VI RFPA+LTYS+QKV+ T+ FLYE+GLS E +GKVLTRCPNI SYS+EEKLRPTAEYF 
Sbjct: 372 VIYRFPAILTYSKQKVETTISFLYELGLSEERVGKVLTRCPNITSYSVEEKLRPTAEYFH 431

Query: 304 SLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTEN 363
           +LGVDV+VLL RCPQ+ G SIEANLKPVT+FFLERG+++E++GTM SR+ ALY+FSL +N
Sbjct: 432 TLGVDVAVLLYRCPQTFGLSIEANLKPVTQFFLERGYSMEDVGTMTSRYAALYSFSLADN 491

Query: 364 LIPKWEFFLTMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNF 423
           L+PKW+FFLTM Y K+EL+KFPQYFGYSLE RIKPRYA +K   V LLLNQ+L+LS SNF
Sbjct: 492 LVPKWDFFLTMGYSKAELIKFPQYFGYSLEGRIKPRYAIMKNSQVMLLLNQLLTLSESNF 551

Query: 424 ENVLKKKIEKAL 435
              + KK+ K L
Sbjct: 552 NKAVIKKVNKLL 563

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804838|ref|XP_002870303.1| hypothetical protein ARALYDRAFT_915404 [Arabidopsis lyrata subsp. lyrata] gi|297316139|gb|EFH46562.1| hypothetical protein ARALYDRAFT_915404 [Arabidopsis lyrata subsp. lyrata]

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 301/420 (71%), Positives = 355/420 (84%), Gaps = 10/420 (2%)

Query: 13  SLRVVPSTLLAAEKEEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSR 72
           S R VP  L+AAEKEEAKAVLTLF KKQGLS  V++R INKSD FIDHLVSRLHSVHK+R
Sbjct: 56  SPRPVPPNLIAAEKEEAKAVLTLFFKKQGLSNSVSSRLINKSDQFIDHLVSRLHSVHKAR 115

Query: 73  YLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVENFPNAPPPAKQKAVA----PVSPP 128
           YLVGRELTTLEIRD+L PYLE L EE+G++L +LV ++P+  PPA+ + VA    PVSPP
Sbjct: 116 YLVGRELTTLEIRDSLIPYLEELHEEHGDLLSELVVSYPD--PPAETRLVASSSVPVSPP 173

Query: 129 VSTLDS----KKLKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSL 184
               DS    +KL+A+SRVSELD+ G LRPQ LYL++LG++LE+IK ITR+F AF YYSL
Sbjct: 174 RGDTDSAAETRKLRAVSRVSELDTEGALRPQTLYLLDLGLNLEQIKTITRKFAAFPYYSL 233

Query: 185 EGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKV 244
           +GKIKPVVEFLLDLGIPK+ IPTIL KRPQ+CGISL++NL PTM FLE LG+DK QWAK+
Sbjct: 234 DGKIKPVVEFLLDLGIPKSDIPTILCKRPQICGISLTDNLKPTMAFLETLGIDKNQWAKI 293

Query: 245 IQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRS 304
           I RFPA+LTYSRQK+  TV+FL + GL+ E IG++LTRCPNI+SYS+E+KLRPT EYFRS
Sbjct: 294 IYRFPAILTYSRQKLTSTVEFLSQTGLTEEQIGRILTRCPNIMSYSVEDKLRPTMEYFRS 353

Query: 305 LGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENL 364
           L VDV+VLL RCPQ+ G SIE+NLKPVTEFFLE+GF ++EIG MISR+GALYTFSL ENL
Sbjct: 354 LNVDVAVLLHRCPQTFGLSIESNLKPVTEFFLEKGFGLDEIGIMISRYGALYTFSLKENL 413

Query: 365 IPKWEFFLTMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFE 424
           +PKW++F TMDY KSELVKFPQ+FGYSL+ERIKPRY  VK  GV+LLLNQVLSLSG  FE
Sbjct: 414 MPKWDYFQTMDYPKSELVKFPQFFGYSLQERIKPRYELVKRSGVRLLLNQVLSLSGIEFE 473

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	453
TAIR|locus:505006461	493	MDA1 "AT4G14605" [Arabidopsis	0.938	0.862	0.649	4.5e-146
TAIR|locus:2056745	283	EMB93 "EMBRYO DEFECTIVE 93" [A	0.523	0.837	0.323	3.4e-29
TAIR|locus:2049329	641	EMB2219 "embryo defective 2219	0.644	0.455	0.264	3.6e-29
TAIR|locus:2051814	507	AT2G44020 "AT2G44020" [Arabido	0.602	0.538	0.289	1.2e-28
TAIR|locus:2062328	303	AT2G34620 "AT2G34620" [Arabido	0.481	0.719	0.318	2.3e-24
TAIR|locus:2207420	591	AT1G78930 "AT1G78930" [Arabido	0.556	0.426	0.282	2.7e-24
TAIR|locus:2139394	541	BSM "AT4G02990" [Arabidopsis t	0.598	0.500	0.263	6.4e-23
TAIR|locus:2039240	333	EMB3114 "AT2G36000" [Arabidops	0.527	0.717	0.277	5.2e-22
TAIR|locus:2087926	274	AT3G18870 "AT3G18870" [Arabido	0.439	0.726	0.307	8.8e-22
TAIR|locus:2162092	496	AT5G55580 "AT5G55580" [Arabido	0.470	0.429	0.272	1.5e-18

TAIR|locus:505006461 MDA1 "AT4G14605" [Arabidopsis thaliana (taxid:3702)]

 Score = 1427 (507.4 bits), Expect = 4.5e-146, P = 4.5e-146
 Identities = 280/431 (64%), Positives = 337/431 (78%)

Query:    13 SLRVVPSXXXXXXXXXXXXXXXXFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSR 72
             S R VP                 F KKQGLS  +++R INKSDLFIDHLVSRLHSVHK+R
Sbjct:    51 SPRPVPPNLIAAEKEEAKAVLTLFFKKQGLSNSLSSRLINKSDLFIDHLVSRLHSVHKAR 110

Query:    73 YLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVENFXXXXXXXXXXXXXXXXX----- 127
             YLVGRELTTLEIRD+L PYLE L EE+G++L +LV +F                      
Sbjct:   111 YLVGRELTTLEIRDSLIPYLEQLHEEHGDLLAELVVSFPDPPAEPRLVASSPVSVLPPRG 170

Query:   128 -XXXTLDSKKLKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEG 186
                   D++KL+A+SRVSELD+ G LRPQ LYL++LG++LE+IK ITR+F AF YYSL+G
Sbjct:   171 DTDSAADTRKLRAVSRVSELDTEGALRPQTLYLLDLGLNLEQIKTITRKFAAFPYYSLDG 230

Query:   187 KIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQ 246
             KIKPVVEFLLDLGIPK+ IPTIL KRPQ+CGISL++NL PTM FLE LG+DK QWAK+I 
Sbjct:   231 KIKPVVEFLLDLGIPKSDIPTILCKRPQICGISLTDNLKPTMAFLETLGIDKNQWAKIIS 290

Query:   247 RFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLG 306
             RFPA+LTYSRQK+  TV+FL + GL+ E IG++LTRCPNI+SYS+E+KLRPT EYFRSL 
Sbjct:   291 RFPAILTYSRQKLTSTVEFLSQTGLTEEQIGRILTRCPNIMSYSVEDKLRPTMEYFRSLN 350

Query:   307 VDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIP 366
             VDV+VLL RCPQ+ G SIE+NLKPVTEFFLE+GF ++EIG MISR+GALYTFSL EN++P
Sbjct:   351 VDVAVLLHRCPQTFGLSIESNLKPVTEFFLEKGFGLDEIGIMISRYGALYTFSLKENVMP 410

Query:   367 KWEFFLTMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFENV 426
             KW++F TMDY KSELVKFPQ+FGYSL+ERIKPRY  V+  GV+LLLNQVLSLSG  FE V
Sbjct:   411 KWDYFQTMDYPKSELVKFPQFFGYSLQERIKPRYELVQRSGVRLLLNQVLSLSGIEFEKV 470

Query:   427 LKKKIEKALSD 437
             +KKK+ K +S+
Sbjct:   471 VKKKMMKLVSN 481

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

TAIR|locus:2056745 EMB93 "EMBRYO DEFECTIVE 93" [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 80/247 (32%), Positives = 137/247 (55%)

Query:   194 FLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLT 253
             +L DL +   +    L   P L    +S +++   T L + G+ +    +++  FP +LT
Sbjct:    38 YLQDLNVDPHKA---LRVNPSLRSAPIS-SVVSVETLLSSTGLSRPAVGRILDMFPDLLT 93

Query:   254 YSRQ-KVKQTVDFLY-EMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLG-VDVS 310
                + ++   + FL  E+ +S + I K ++RCP ++  S++ +LRP   + ++LG V   
Sbjct:    94 SDPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVGRD 153

Query:   311 VLLQRCPQSLGCSIEANLKPVTEFFLER-GFTVEEIGTMISRFGALYTFSLTENLIPKWE 369
              +  R    L  ++E  L P  E+  E  GFT EE+  M+ R  AL T+S+  NL+PK E
Sbjct:   154 TITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPKVE 213

Query:   370 FFLT-MDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFEN-VL 427
             FF+  M  D  EL +FPQYF +SLE +IKPR+  +K HG+ + L+++L +S   F + +L
Sbjct:   214 FFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSDGQFNHWLL 273

Query:   428 KKKIEKA 434
             + ++  A
Sbjct:   274 ELRLRSA 280

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0071452 "cellular response to singlet oxygen" evidence=IGI

TAIR|locus:2049329 EMB2219 "embryo defective 2219" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 3.6e-29, P = 3.6e-29
 Identities = 80/303 (26%), Positives = 158/303 (52%)

Query:   140 ISRVSELDSSG--DLRPQILYLIELGMDLEKIKLITRRFPAF-SYYSLEGKIKPVVEFLL 196
             + R  EL S    +++ ++ + +++GM+      +   +P    ++S +   K +  +L 
Sbjct:   302 VGRCPELLSFSMEEVKSRVDFFLKMGMNQNDFGTMVYDYPKIIGFFSFQVMEKKI-NYLK 360

Query:   197 DLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSR 256
             + G+   ++  +L  +P L G S+ E   P + +   LG+ K    +++   P +     
Sbjct:   361 EFGLSTEEVGRLLAYKPHLMGCSIEERWKPLVKYFYYLGIPKEGMKRILVVKPILYCIDL 420

Query:   257 QK-VKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRS-LGV---DVSV 311
             +K +   V FL EMG+  E+IG +L + P++++ S+ +K+RP   +  +  GV   D+  
Sbjct:   421 EKTIAPKVRFLQEMGIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFLLTRAGVTQKDIGK 480

Query:   312 LLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFF 371
             ++   P  LGCSI   L+P   +++  G    ++G MI+ F  L  +++ +NL PK+ + 
Sbjct:   481 VIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNV-DNLRPKYRYL 539

Query:   372 L-TMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFENVLKKK 430
               TM     +L++FP++F YSLE RI PR+  +  + V   L  +L+ +   FE  ++ K
Sbjct:   540 RRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENRVNFKLRYMLACTDEEFERRVRDK 599

Query:   431 IEK 433
             +E+
Sbjct:   600 VER 602

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2051814 AT2G44020 "AT2G44020" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 83/287 (28%), Positives = 153/287 (53%)

Query:   151 DLRPQILYLIELGMDLEKIKL--ITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTI 208
             +L P + +L   G+D+EK  L  +  ++P    + LEG +   V +L+ +G+    I  +
Sbjct:   179 ELAPVVKFL--RGLDVEKQDLGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPM 236

Query:   209 LGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQK-VKQTVDFLY 267
             + + P L G+ +   + P + +L ++G+ K   A+++++   ++ Y+ ++ VK  VD L 
Sbjct:   237 VTQYPYLLGMRVGTMIKPLVDYLISIGLPKKIVARMLEKRSYIVGYNLEETVKPNVDCLI 296

Query:   268 EMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSV-----LLQRCPQSLGC 322
               G+  E +  ++ + P I+   ++ K+  T +YF SL + +       ++++ PQ +  
Sbjct:   297 SFGVKKELLPLLIAQYPQILGLPVKAKMS-TQQYFFSLKLKIDPEGFARVVEKMPQIVSL 355

Query:   323 SIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLT-MDYDKSEL 381
                  +KP+ EF L R F VE+I  M+ R   +   S  E +   + F+ T M     EL
Sbjct:   356 KQNVIMKPI-EFLLGRAFQVEDIAKMVVRCPQILC-SRVELMKNSYYFYKTEMGRPMKEL 413

Query:   382 VKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFENVLK 428
             V++P+YF YSLE RIKPRY +++  G++  LN  L+ S   FE  L+
Sbjct:   414 VEYPEYFTYSLESRIKPRYQKLQSKGIRSSLNWFLNCSDQRFEERLQ 460

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2062328 AT2G34620 "AT2G34620" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.3e-24, P = 2.3e-24
 Identities = 71/223 (31%), Positives = 119/223 (53%)

Query:   209 LGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYS-RQKVKQTVDFLY 267
             L   P LC   L +++   + FL++ G+      +++   P +LT   R ++     FL 
Sbjct:    73 LSLNPCLCSAPL-DSIQSVLHFLQSKGIYPNDLPRILGMCPKILTSDVRTELYPVFMFLS 131

Query:   268 -EMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGV-DVSVLLQRCPQSLGCSIE 325
              ++ +   +  +V+ +CP ++  S+E++L+P   Y + LG+ D+  L  + P  L  S+E
Sbjct:   132 NDLHVPENAFRRVIKKCPRLLISSVEDQLKPALFYLQRLGLKDLEALAYQDPILLVSSVE 191

Query:   326 ANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSELVK-F 384
               L P   F    GF+  E   MI R  AL+TFS+  N  PK ++F++    K E +K F
Sbjct:   192 HTLIPKLRFLESIGFSRPEAIGMILRCPALFTFSIENNFKPKLDYFMSEIKGKLENLKEF 251

Query:   385 PQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFENVL 427
             PQYF +SLE+RIKPR+      G++L L+ +L  +   FE +L
Sbjct:   252 PQYFAFSLEKRIKPRHLESMERGLELPLSLMLKSTDEEFEQLL 294

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

TAIR|locus:2207420 AT1G78930 "AT1G78930" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 2.7e-24, P = 2.7e-24
 Identities = 73/258 (28%), Positives = 132/258 (51%)

Query:   170 KLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMT 229
             KL+ + +P     S++     +  F     + K  I   + + P L G S S N+   + 
Sbjct:   319 KLLLK-YPWILSPSIQENYSHIGSFFYSESVLKMDIDHAIRRWPLLLGCSAS-NMEMMVK 376

Query:   230 FLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISY 289
               + LGV   +  KVI + P +L    Q+  + V FL ++G   E +G++L RCP I   
Sbjct:   377 EFDKLGVRDKRMGKVIPKMPQLLLCKPQEFLKVVCFLEDLGFQKEIVGQILCRCPEIFGC 436

Query:   290 SIEEKLRPTAEYFRSLGVDVSV---LLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIG 346
             SIE+ L+    +    GV  +    ++++ P+ L    +  + P  ++ +E G +  EI 
Sbjct:   437 SIEKTLQKKLIFLTRFGVSTTHFPRIIKKYPEFLIYDADKTVLPRLKYLMEIGISEREIA 496

Query:   347 TMISRFGALYTFSLTENLIPKWEFFL-TMDYDKSELVKFPQYFGYSLEERIKPRYARVKV 405
              MI +F  +  +S+ + L PK+EF + +M+    E++++P+YF YSLE+RIKPR+  +K 
Sbjct:   497 FMIRKFSPILGYSIDKVLRPKFEFLVNSMEKPVREVIEYPRYFSYSLEKRIKPRFRVLKG 556

Query:   406 HGVKLLLNQVLSLSGSNF 423
               ++  L ++L  +   F
Sbjct:   557 RNIECTLQEMLGKNDEEF 574

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2139394 BSM "AT4G02990" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 6.4e-23, P = 6.4e-23
 Identities = 74/281 (26%), Positives = 139/281 (49%)

Query:   151 DLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILG 210
             DL P + YL  L +    +  +  R+P    + LEG +   V +L+ +G+ + +I  IL 
Sbjct:   214 DLAPVVKYLQGLDIKPSDVPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVARREIGGILT 273

Query:   211 KRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQK-VKQTVDFLYEM 269
             + P++ G+ ++  + P + +LE LG+ +   A++I++ P +L +     VK  V  L + 
Sbjct:   274 RYPEILGMRVARIIKPLVEYLEVLGIPRLAAARLIEKRPHILGFELDDTVKPNVQILQDF 333

Query:   270 GLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSL----GVDVSVLLQRCPQSLGCSIE 325
              +   S+  ++ + P II   ++ KL    +   S       D+  L++R PQ +  S  
Sbjct:   334 NVRETSLPSIIAQYPEIIGIDLKPKLDTQRKLLCSAIHLNPEDLGSLIERMPQFVSLSES 393

Query:   326 ANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIP-KWEFFLT-MDYDKSELVK 383
               LK + +F  + GF++++   M+   G     +L   ++   +E+F   M     +LV 
Sbjct:   394 PMLKHI-DFLTKCGFSIDQTREMV--IGCPQVLALNLGIMKLSFEYFQKEMKRPLQDLVD 450

Query:   384 FPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFE 424
             FP +F Y LE  +KPR+ ++   G+K  L  +L+ S   FE
Sbjct:   451 FPAFFTYGLESTVKPRHKKIIKKGIKCSLAWMLNCSDEKFE 491

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008380 "RNA splicing" evidence=IMP

GO:0009536 "plastid" evidence=IDA

GO:0009790 "embryo development" evidence=IMP

GO:0032502 "developmental process" evidence=IMP

GO:0042793 "transcription from plastid promoter" evidence=IMP

GO:0042794 "rRNA transcription from plastid promoter" evidence=IMP

TAIR|locus:2039240 EMB3114 "AT2G36000" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 5.2e-22, P = 5.2e-22
 Identities = 70/252 (27%), Positives = 127/252 (50%)

Query:   183 SLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLS--ENLIPTMTFLENLGVDKTQ 240
             +LE  I   + +L  LGI      T++ + P L   +LS  E+++  MT    +      
Sbjct:    68 TLESSIHEKLIYLDSLGI---DFLTLINRHPPLLSTALSAVESVVDYMT-TPPINFTLQD 123

Query:   241 WAKVIQRFPAVLT--YSRQKVKQTVDFLYEMGL-SAESIGKVLTRCPNIISYSIEEKLRP 297
             + +++   P +LT   +   +      L E+G+ S   + + L R P +++ S++ +LRP
Sbjct:   124 FRRLVSMCPELLTSPLTSHTIPVITFLLREVGVDSIFDLRQALRRRPRLLACSVDHQLRP 183

Query:   298 TAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYT 357
             T  + + +G+   +   +    L CS++  L P  ++F + GF+      M  RF  L+ 
Sbjct:   184 TLYFLQRIGI---LDPHKHTYLLSCSVDNKLVPRIDYFEKLGFSRRSATAMFKRFPQLFN 240

Query:   358 FSLTENLIPKWEFFLT-MDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVL 416
             +S+ EN  PK ++ +  M  D  E+++FPQYF +SLE RIKPR+      GV+  L  +L
Sbjct:   241 YSIAENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPLPVML 300

Query:   417 SLSGSNFENVLK 428
               + + F + L+
Sbjct:   301 KTNEAGFRDTLE 312

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2087926 AT3G18870 "AT3G18870" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 8.8e-22, P = 8.8e-22
 Identities = 63/205 (30%), Positives = 108/205 (52%)

Query:   224 LIPTMTFLENLGVDKTQWAKVIQRFPAVL--TYSRQKVKQTVDFLY-EMGLSAESIGKVL 280
             ++  +  L++ G+    + +++   P +   T+   K+    DFL  E+G SAE    ++
Sbjct:    65 ILSAVNLLKSKGISDEDFPRLVFLCPQLFSPTFDISKLDPVFDFLTGELGASAEESRGLI 124

Query:   281 TRCPNIISYSIEEKLRPTAEYFRSLGV-DVSVLLQRCPQSLGCSIEANLKPVTEFFLERG 339
               CPNI+   +E  LRPT  Y + LGV +++   +     L   +E  L+    F    G
Sbjct:   125 VNCPNILFSDVEYCLRPTLVYLKELGVRNLNRASKTNAHVLNTRVE-KLRAKMRFLKSIG 183

Query:   340 FTVEEIGTMISRFGALYTFSLTENLIPKWEFFL-TMDYDKSELVKFPQYFGYSLEERIKP 398
             F  EE   +  R  A++ +S+ +NL PK+EF +  M+ +  EL KFPQYF +SL +RI+P
Sbjct:   184 FEHEEAARVCGRIPAIFGYSVEDNLRPKFEFLVYDMERELEELKKFPQYFAFSLGKRIRP 243

Query:   399 RYARVKVHGVKLLLNQVLSLSGSNF 423
             R+  +K   V++ L+++L      F
Sbjct:   244 RHWHLKKKNVRVSLSRMLMWGDQKF 268

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2162092 AT5G55580 "AT5G55580" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 1.5e-18, P = 1.5e-18
 Identities = 61/224 (27%), Positives = 116/224 (51%)

Query:   158 YLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCG 217
             YL+ +G+    IK +  R P    Y++E  +K  + FL+ LGIP ++I  I+   P L  
Sbjct:   225 YLLSVGVKHRDIKRMLLRQPQILQYTVENNLKAHISFLMGLGIPNSKIGQIVAATPSLFS 284

Query:   218 ISLSENLIPTMTFL-ENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLY---EMGLSA 273
              S+  +L PT+ +L E +G+ +T   KV+Q  P +L   R  +     +++   E+G   
Sbjct:   285 YSVENSLRPTIRYLIEEVGIKETDVGKVVQLSPQILV-QRLDITWNTRYMFLSKELGAPR 343

Query:   274 ESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGV---DVSVLLQRCPQSLGCSIEANLKP 330
             +S+ K++ + P ++ YSI++   P   + RS+G+   D+  +L    Q L  S+E NLKP
Sbjct:   344 DSVVKMVKKHPQLLHYSIDDGFLPRINFLRSIGMCNSDILKVLTSLTQVLSLSLEDNLKP 403

Query:   331 VTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTM 374
                + +       E+  +++++    + SL + + P+  F + +
Sbjct:   404 KYMYLVNE--LNNEVH-ILTKYPMYLSLSLDQRIRPRHRFLVEL 444

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	453
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	3e-36
pfam02536	345	pfam02536, mTERF, mTERF	9e-35
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	5e-19
smart00733	31	smart00733, Mterf, Mitochondrial termination facto	3e-04
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	4e-04
smart00733	31	smart00733, Mterf, Mitochondrial termination facto	0.003

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score =  139 bits (351), Expect = 3e-36
 Identities = 87/280 (31%), Positives = 147/280 (52%), Gaps = 8/280 (2%)

Query: 151 DLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILG 210
           DL P + YL  L +  + I  +  R+P    + LEG +   V +L+ +G+    I  +L 
Sbjct: 159 DLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLT 218

Query: 211 KRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQ-KVKQTVDFLYEM 269
           + P++ G+ +  N+ P + +LE+LG+ +   A+++++ P +L +  +  VK  V+ L E 
Sbjct: 219 RFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEF 278

Query: 270 GLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRS-LGV---DVSVLLQRCPQSLGCSIE 325
           G+  E++  V+ + P+I+   ++ KL     +  S L +   D   ++++ PQ +  +  
Sbjct: 279 GVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLNRN 338

Query: 326 ANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLT-MDYDKSELVKF 384
             LK V EF   RGF+ +++  M+ R   +   +L E + P  EFF   M     ELV+F
Sbjct: 339 VALKHV-EFLRGRGFSAQDVAKMVVRCPQILALNL-EIMKPSLEFFKKEMKRPLKELVEF 396

Query: 385 PQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFE 424
           P YF Y LE RIKPRY RV   G+K  L   L+ S   FE
Sbjct: 397 PAYFTYGLESRIKPRYERVAKKGIKCSLAWFLNCSDDKFE 436

Length = 487

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score =  132 bits (333), Expect = 9e-35
 Identities = 88/338 (26%), Positives = 148/338 (43%), Gaps = 45/338 (13%)

Query: 130 STLDSKKLKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIK 189
            +L S  ++    +   D+  +L+P++ +L   G    ++  I    P          I 
Sbjct: 11  DSLISTIIRDYPLLLGADAEKNLQPKLQFLQSRGASKSELTKIVSTVPKILGKKGVKSIS 70

Query: 190 PVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGV-DKTQWAKVIQRF 248
            V +FL  + +      + L K P+      + N I  ++ L  LGV  K  ++ +I R 
Sbjct: 71  SVYDFLKKIIVADLDKSSKLEKYPESLPQGNNGNKIRNVSVLRELGVPPKLLFSLLISRP 130

Query: 249 PAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGV- 307
             V    ++  ++++  + EMG    +  +V+ + P ++ YS ++ ++P  E+ +SLG  
Sbjct: 131 RPVC--GKEVFEESLKKVVEMGFDPTTFKRVIAKRPRLLLYSSDKTIKPNVEFLKSLGFS 188

Query: 308 --DVSVLLQRCPQSLGCSIEANLK--------------------------------PVTE 333
             DV  +L++CP+ LG S +  L+                                   E
Sbjct: 189 VEDVWAILKKCPELLGSSEKKKLQTQEILKTCGLLEFLSVIKKMPQFVSYSEQKILNKIE 248

Query: 334 FFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLT-MDYDKSELVKFPQYFGYSL 392
           F L  GF+ EEI  M+ R   L   S  E +  K EF +  M++   ELV+FPQ FGYSL
Sbjct: 249 FLLGLGFSREEIAKMVKRCPQLLGLS-VEKVKKKTEFLVKEMNWPLKELVEFPQVFGYSL 307

Query: 393 EERIKPRYARVKV---HGVKLL--LNQVLSLSGSNFEN 425
           E+RIKPR   VK     G  +L  L+ +L  +   F  
Sbjct: 308 EKRIKPRCNVVKALMSKGKSILPSLSSMLKCTDEEFLQ 345

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 89.0 bits (221), Expect = 5e-19
 Identities = 61/213 (28%), Positives = 119/213 (55%), Gaps = 9/213 (4%)

Query: 145 ELDSSGD-LRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKA 203
           EL S+ D +R ++ +L +LG+ +E I      +P     S++  + PV+++L  LG+ ++
Sbjct: 84  ELPSTVDVMRERVEFLHKLGLTIEDIN----EYPLVLGCSVKKNMIPVLDYLEKLGVTRS 139

Query: 204 QIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQT- 262
            +P +L + PQ+   S+  +L P + +L+ L V +    +V++R+P +L +  +    T 
Sbjct: 140 SLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTS 199

Query: 263 VDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGV---DVSVLLQRCPQS 319
           V +L  +G++   IG +LTR P I+   +   ++P  +Y  SLG+    V+ +L++ P  
Sbjct: 200 VAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYI 259

Query: 320 LGCSIEANLKPVTEFFLERGFTVEEIGTMISRF 352
           LG  +E  +KP  E  LE G   E + ++I+++
Sbjct: 260 LGFDLEETVKPNVECLLEFGVRKEALPSVIAQY 292

Length = 487

>gnl|CDD|197848 smart00733, Mterf, Mitochondrial termination factor repeats

 Score = 37.8 bits (89), Expect = 3e-04
 Identities = 14/30 (46%), Positives = 23/30 (76%)

Query: 243 KVIQRFPAVLTYSRQKVKQTVDFLYEMGLS 272
           K++++FP +L YS +K+K  V+FL E+G S
Sbjct: 2   KIVKKFPQILGYSEKKLKPKVEFLKELGFS 31

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins. Length = 31

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 24/105 (22%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 293 EKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRF 352
           + +R   E+   LG+ +  +    P  LGCS++ N+ PV ++  + G T   +  ++ R+
Sbjct: 90  DVMRERVEFLHKLGLTIEDIN-EYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRY 148

Query: 353 GALYTFSLTENLIPKWEFFLTMDYDKSE----LVKFPQYFGYSLE 393
             +   S+  +L P  ++   +D  + +    L ++P+  G+ LE
Sbjct: 149 PQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLE 193

Length = 487

>gnl|CDD|197848 smart00733, Mterf, Mitochondrial termination factor repeats

 Score = 35.1 bits (82), Expect = 0.003
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 278 KVLTRCPNIISYSIEEKLRPTAEYFRSLGVD 308
           K++ + P I+ YS E+KL+P  E+ + LG  
Sbjct: 2   KIVKKFPQILGYS-EKKLKPKVEFLKELGFS 31

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins. Length = 31

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	453
PLN03196	487	MOC1-like protein; Provisional	100.0
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
KOG1267	413	consensus Mitochondrial transcription termination	99.91
KOG1267	413	consensus Mitochondrial transcription termination	99.74
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	96.81
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	96.78
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	90.66
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	90.41

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=7.6e-57  Score=470.72  Aligned_cols=382  Identities=26%  Similarity=0.450  Sum_probs=331.0

Q ss_pred             HHHHHHHHHHHHHHHcCCChHHHHHHhhcChHHHHHHHhhhHhhhhhhhcccCccchHHHHHhhHHHHHHhhhhhhhhHH
Q 012919           25 EKEEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLV  104 (453)
Q Consensus        25 ~~~~a~~~~~~~l~~~g~~~~~a~~i~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lEslg~~~~~~l~  104 (453)
                      ++.+.++.+.+||..-|+....++..-  -|..++.+-                        ..+.||+|+|++... + 
T Consensus        58 ~~~~~~~~~~~~L~~lgi~~~~l~~~~--~p~~~~~~~------------------------~~l~~L~s~G~~~~~-i-  109 (487)
T PLN03196         58 EKLVNREKVLDFLRGIGIDPDELDGLE--LPSTVDVMR------------------------ERVEFLHKLGLTIED-I-  109 (487)
T ss_pred             hhhhhHHHHHHHHHHcCCCchhhhccC--CCccHHHHH------------------------HHHHHHHHcCCChHH-h-
Confidence            566788999999999999988876633  233333222                        334566666665333 2 


Q ss_pred             HHHHcCCCCCCcccccccccCCCCCCCCChH------HHhhccccccCCCCCChHHHHHHHHhcCCCHHHHHHHHHhCCC
Q 012919          105 DLVENFPNAPPPAKQKAVAPVSPPVSTLDSK------KLKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPA  178 (453)
Q Consensus       105 ~~v~~~p~~~~~~~~~~~~~~~~~~~~~d~~------~~~a~~r~l~~~~~~~l~~~l~~L~~lGls~~~i~~iv~~~P~  178 (453)
                         .+||.+++.+......|+..|+..++..      .+..-++++..+.+.++.|+++||+++|++.++|.+++.++|+
T Consensus       110 ---~~~P~iL~~~v~~~l~Pvl~fL~~lG~s~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~lGvs~~~i~~~l~r~P~  186 (487)
T PLN03196        110 ---NEYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPE  186 (487)
T ss_pred             ---ccCcHHhhcCHhhhhHHHHHHHHHcCCCHHHHHHHHHhCCceecccHHHHHHHHHHHHHHcCCCHHHHHHHHHhCch
Confidence               1456666555555555555554322211      1122344556677889999999999999999999999999999


Q ss_pred             ccccCcCCChHHHHHHHHhCCCCCCCHHHHHhhCCCcccCCcccchHHHHHHHHHhCCChhhHHHHHHhcccccccchh-
Q 012919          179 FSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQ-  257 (453)
Q Consensus       179 lL~~~~~~~l~~~v~fL~~lG~~~~~I~~ii~~~P~lL~~s~e~~l~~~l~fL~~lGvs~~~i~~il~~~P~iL~~s~~-  257 (453)
                      +|++++++++.|+++||.++|+++++|++++.++|++|+++++++++|+++||+++|++.+++++++.++|++|+++.+ 
T Consensus       187 LL~~~~e~~l~p~v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I~~il~~~P~iL~~sle~  266 (487)
T PLN03196        187 LLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEE  266 (487)
T ss_pred             hhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEcCHHH
Confidence            9999999899999999999999999999999999999999999999999999999999999999999999999999997 


Q ss_pred             hHHHHHHHHHHcCCChHHHHHHhhhCCceeEechhhcHHHHHHHHh-hcCCChh---HHHhhcccccccccccccchhHH
Q 012919          258 KVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFR-SLGVDVS---VLLQRCPQSLGCSIEANLKPVTE  333 (453)
Q Consensus       258 ~l~~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~-~lG~~~~---~ii~~~P~iL~~s~e~~l~~~~~  333 (453)
                      +++++++||.++|++++.++.++.++|.++++++++++.++++|+. ++|++..   .++.++|++++++. +++.++++
T Consensus       267 ~lkp~v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~il~lSe-~kl~~kve  345 (487)
T PLN03196        267 TVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLNR-NVALKHVE  345 (487)
T ss_pred             hHHHHHHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchhhcccH-HHHHHHHH
Confidence            6999999999999999999999999999999999889999999996 6999865   46889999999994 78999999


Q ss_pred             HHHHhCCChHHHHHHhhhccccccccchhhHhHHHHHHH-HcCCChHHHhhcCccccccccccchhhHHHHHHhCcccCh
Q 012919          334 FFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFL-TMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLL  412 (453)
Q Consensus       334 ~L~~~G~s~eev~~mi~~~P~lL~~sl~~~L~~k~~fL~-~~g~~~~~l~~~P~~L~~Sle~rIkpR~~~L~~lg~~~~L  412 (453)
                      ||.++|++.+++..||.++|++|++|+ ++|++|++||. +||++.++|++||+||+||+|+||+|||++|++.|.++++
T Consensus       346 fL~~~Gls~edI~~mv~k~P~lL~~S~-~~l~~k~dFlvneMg~~~~~Iv~fP~~LsySLEkRI~PR~~~L~~kGl~~sL  424 (487)
T PLN03196        346 FLRGRGFSAQDVAKMVVRCPQILALNL-EIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYERVAKKGIKCSL  424 (487)
T ss_pred             HHHHcCCCHHHHHHHHHhCCceeeccH-HHHHHHHHHHHHHhCCCHHHHHhChHHhccChhhhhHHHHHHHHHcCCCCCH
Confidence            999999999999999999999999995 99999999999 8999999999999999999999999999999999999999


Q ss_pred             hhhhccchHhHHHHHHHHHHhhhccCC
Q 012919          413 NQVLSLSGSNFENVLKKKIEKALSDGG  439 (453)
Q Consensus       413 ~~~L~~sd~~F~~~~~~~~~~~~~~~~  439 (453)
                      .++|++||++|+++|+.+|++....++
T Consensus       425 ~~~L~~sd~~F~~r~v~~y~e~~~~~~  451 (487)
T PLN03196        425 AWFLNCSDDKFEQRMSGDFIEGEEMEP  451 (487)
T ss_pred             HHHhccCHHHHHHHHhhhcccccccCC
Confidence            999999999999999999999887776

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=2.7e-44  Score=376.15  Aligned_cols=341  Identities=21%  Similarity=0.409  Sum_probs=295.8

Q ss_pred             HHhhHHHHHHhhhhhhhhHHHHHHcCCCCCCcccccccccCCCCC--CCCChHHHhhccccccCCCCCChHHHHHHHHhc
Q 012919           85 RDALTPYLESLLEEYGNVLVDLVENFPNAPPPAKQKAVAPVSPPV--STLDSKKLKAISRVSELDSSGDLRPQILYLIEL  162 (453)
Q Consensus        85 ~~~~~~~lEslg~~~~~~l~~~v~~~p~~~~~~~~~~~~~~~~~~--~~~d~~~~~a~~r~l~~~~~~~l~~~l~~L~~l  162 (453)
                      |..++.||++||+...+.     .+++.  +.+++ .+.+.+.++  .|++.+.+...+.++..+.+.++.|+++||.++
T Consensus        63 ~~~~~~~L~~lgi~~~~l-----~~~~~--p~~~~-~~~~~l~~L~s~G~~~~~i~~~P~iL~~~v~~~l~Pvl~fL~~l  134 (487)
T PLN03196         63 REKVLDFLRGIGIDPDEL-----DGLEL--PSTVD-VMRERVEFLHKLGLTIEDINEYPLVLGCSVKKNMIPVLDYLEKL  134 (487)
T ss_pred             HHHHHHHHHHcCCCchhh-----hccCC--CccHH-HHHHHHHHHHHcCCChHHhccCcHHhhcCHhhhhHHHHHHHHHc
Confidence            446788999999986662     11221  22232 333444453  455555555667888889999999999999999


Q ss_pred             CCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhCCCCCCCHHHHHhhCCCcccCCcccchHHHHHHHHHhCCChhhHH
Q 012919          163 GMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWA  242 (453)
Q Consensus       163 Gls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~I~~ii~~~P~lL~~s~e~~l~~~l~fL~~lGvs~~~i~  242 (453)
                      |++..+|++++.++|.+|.++++.++.|+++||+++|++.++|++++.++|++|+++++.++.++++||+++|+++++++
T Consensus       135 G~s~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~lGvs~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~~i~  214 (487)
T PLN03196        135 GVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIG  214 (487)
T ss_pred             CCCHHHHHHHHHhCCceecccHHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhcCCHHHHHHHHHHHHHHcCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccccccchhh-HHHHHHHHHHcCCChHHHHHHhhhCCceeEechhhcHHHHHHHHhhcCCCh---hHHHhhccc
Q 012919          243 KVIQRFPAVLTYSRQK-VKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDV---SVLLQRCPQ  318 (453)
Q Consensus       243 ~il~~~P~iL~~s~~~-l~~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~~lG~~~---~~ii~~~P~  318 (453)
                      +++.++|+||+++.++ ++++++||+++|++.++|++++.++|++|+++++++++|++++|+++|++.   ..++.++|.
T Consensus       215 ~il~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I~~il~~~P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~  294 (487)
T PLN03196        215 PMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPD  294 (487)
T ss_pred             HHHHhCcHHhhcChhhhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCc
Confidence            9999999999999975 999999999999999999999999999999999889999999999999985   568899999


Q ss_pred             ccccccccccchhHHHHH-HhCCChHHHHHHhhhccccccccchhhHhHHHHHHHHcCCChHHH----hhcCcccccccc
Q 012919          319 SLGCSIEANLKPVTEFFL-ERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSEL----VKFPQYFGYSLE  393 (453)
Q Consensus       319 iL~~s~e~~l~~~~~~L~-~~G~s~eev~~mi~~~P~lL~~sl~~~L~~k~~fL~~~g~~~~~l----~~~P~~L~~Sle  393 (453)
                      ++++++++++.++++||. ++|++.+++..++.++|.++++| ++++++|++||.++|++.+++    .++|++|+||. 
T Consensus       295 iL~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~il~lS-e~kl~~kvefL~~~Gls~edI~~mv~k~P~lL~~S~-  372 (487)
T PLN03196        295 ILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLN-RNVALKHVEFLRGRGFSAQDVAKMVVRCPQILALNL-  372 (487)
T ss_pred             eeEecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchhhccc-HHHHHHHHHHHHHcCCCHHHHHHHHHhCCceeeccH-
Confidence            999999999999999996 79999999999999999999999 799999999999999999987    69999999998 


Q ss_pred             ccchhhHHHHHH-hCcccC----hhhhhccchHhHHHHHHHHHHhhhccC
Q 012919          394 ERIKPRYARVKV-HGVKLL----LNQVLSLSGSNFENVLKKKIEKALSDG  438 (453)
Q Consensus       394 ~rIkpR~~~L~~-lg~~~~----L~~~L~~sd~~F~~~~~~~~~~~~~~~  438 (453)
                      ++|+++++|+.. +|....    ..++|+.|=   .++++.||.-+.+.|
T Consensus       373 ~~l~~k~dFlvneMg~~~~~Iv~fP~~LsySL---EkRI~PR~~~L~~kG  419 (487)
T PLN03196        373 EIMKPSLEFFKKEMKRPLKELVEFPAYFTYGL---ESRIKPRYERVAKKG  419 (487)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHhChHHhccCh---hhhhHHHHHHHHHcC
Confidence            589999999874 665421    245666652   256677777666555

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=9.8e-46  Score=374.43  Aligned_cols=302  Identities=35%  Similarity=0.627  Sum_probs=197.8

Q ss_pred             HHHHhhhhhhhhHHHHHHcCCCCCCcccccccccCCCCCCCCChHHHhhccccccCCCCCChHHHHHHHHhcCCCHHHHH
Q 012919           91 YLESLLEEYGNVLVDLVENFPNAPPPAKQKAVAPVSPPVSTLDSKKLKAISRVSELDSSGDLRPQILYLIELGMDLEKIK  170 (453)
Q Consensus        91 ~lEslg~~~~~~l~~~v~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~a~~r~l~~~~~~~l~~~l~~L~~lGls~~~i~  170 (453)
                      +|++.|.+. ..+..+++++|.++                              ..+++.++.|+++||.+.|++..+++
T Consensus         3 ~~~~~gf~~-~~i~~~i~~~P~~l------------------------------~~~~~~~l~pk~~fl~s~G~s~~~i~   51 (345)
T PF02536_consen    3 LLKNHGFSD-SQISKLIRRYPRLL------------------------------LCDPEKTLLPKLEFLRSLGFSSSDIA   51 (345)
T ss_dssp             HHHHHHHHT-S-HHHHHH-H-HHH------------------------------HT-SS-HHHHHHHHHHHTT--HHHHH
T ss_pred             HHHHcCCCH-HHHHHHHHhCCceE------------------------------EecCccchhHHHHHHHHCCCCHHHHH
Confidence            567777763 33666778777753                              34566666666666666666666666


Q ss_pred             HHHHhCCCccccCcCCChHHHHHHHHhCCCCCCCHHHHHhhCCCcccCCcccchHHHHHHHHHhCCChhhHHHHHHhccc
Q 012919          171 LITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPA  250 (453)
Q Consensus       171 ~iv~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~I~~ii~~~P~lL~~s~e~~l~~~l~fL~~lGvs~~~i~~il~~~P~  250 (453)
                      +++.++|.++..++++++.|.++||+++|++++++.+++.++|++|..+.+.++.+++.||+++|++.+.+.+++...|.
T Consensus        52 ~il~~~P~il~~s~~~~i~p~~~~L~~~~~s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~  131 (345)
T PF02536_consen   52 KILSKNPQILSRSLEKNIIPVFDFLKSIGLSDEDIVKVLKRYPRILSFSVEENLSPNVAFLRSLGVPPSQIISLLISRPP  131 (345)
T ss_dssp             HHHHH-GGGGGS--HHHHHHHHHHHTTTSS-HHHHHHHHHH-SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHHH-CH
T ss_pred             HHHHhChHHHhccchhhHHHHHHHHHHHcCCHHHHHHHHHhcchhhccchHhhhhhhhhHHhhcCCcHHHHHHHHHhcCc
Confidence            66666666666665566666666666666666666666666666666655456666666666666666655666666655


Q ss_pred             ccccchhhHHHHHHHHHHcCCChHHHHHHhhhCCceeEechhhcHHHHHHHHhhcCCCh---hHHHhhcccccccccc--
Q 012919          251 VLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDV---SVLLQRCPQSLGCSIE--  325 (453)
Q Consensus       251 iL~~s~~~l~~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~~lG~~~---~~ii~~~P~iL~~s~e--  325 (453)
                      ++... +++.+.++++.++|++++++++++.++|+++....+++++++++||+++|++.   .+++.++|.++.++.+  
T Consensus       132 ~~~~~-~~~~~~v~~l~~lG~~~~~~~~vi~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~  210 (345)
T PF02536_consen  132 LFLSS-EKIKERVEFLKELGFDPEKIGRVIAKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKI  210 (345)
T ss_dssp             HHHS--HHHHCHHHHHCCCTSSHHHHCCCHHHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC-
T ss_pred             cccch-hHHHHHHHHHHHhCCCchhhcccccccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceeccccccc
Confidence            44444 55666666666666666666666666665555555556666666666666642   3445555555555543  


Q ss_pred             ------------------------------cccchhHHHHHHhCCChHHHHHHhhhccccccccchhhHhHHHHHHH-Hc
Q 012919          326 ------------------------------ANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFL-TM  374 (453)
Q Consensus       326 ------------------------------~~l~~~~~~L~~~G~s~eev~~mi~~~P~lL~~sl~~~L~~k~~fL~-~~  374 (453)
                                                    +++.++++||.++|++.+|+++|+.++|.+|++|. +++++|++||. +|
T Consensus       211 l~~~~~l~~~~~~~~~~~i~~~p~il~~~~~~l~~~i~~L~~lG~s~~ei~~mv~~~P~iL~~s~-e~l~~k~~fl~~~m  289 (345)
T PF02536_consen  211 LEPVLYLLSSGGVEEERVIKKFPQILSLSEEKLKPKIEFLQSLGFSEEEIAKMVRRFPQILSYSI-EKLKPKFEFLVKEM  289 (345)
T ss_dssp             --------------------------THHHHHHHHHHHHHHTTT--HHHHHHHHHHSGGGGGS-H-HHHHHHHHHHHHCC
T ss_pred             ccccccccccccccccccccccccccccchHhHHHHHHHHHHhcCcHHHHHHHHHhCcchhhcch-hhhhHHHHHHHHHh
Confidence                                          36889999999999999999999999999999995 67999999999 79


Q ss_pred             CCChHHHhhcCccccccccccchhh---HHHHHHhC--cccChhhhhccchHhHHH
Q 012919          375 DYDKSELVKFPQYFGYSLEERIKPR---YARVKVHG--VKLLLNQVLSLSGSNFEN  425 (453)
Q Consensus       375 g~~~~~l~~~P~~L~~Sle~rIkpR---~~~L~~lg--~~~~L~~~L~~sd~~F~~  425 (453)
                      |++.++|++||++|+||+|+||+||   +++++..|  .++++.+||.+||++|++
T Consensus       290 ~~~~~~i~~~P~~l~~sLe~ri~PR~~~~~~l~~~g~~~~~sl~~~l~~s~~~F~~  345 (345)
T PF02536_consen  290 GLPLEEIVEFPQYLSYSLEKRIKPRYEVLKVLKSKGLIINPSLSSMLSCSDEEFLK  345 (345)
T ss_dssp             T--HHHHHHSCHHHCS-HHHHHHHHHHHHHTT--TTTGGGGGS-HHHHHHHHHHT-
T ss_pred             CcCHHHHhhCCceeEechhhhhhhHHHHHHHHHHCcCCCCCCHHHHhhccHHHhcC
Confidence            9999999999999999999999999   55566678  778899999999999974

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=3.1e-34  Score=290.36  Aligned_cols=276  Identities=31%  Similarity=0.582  Sum_probs=221.2

Q ss_pred             HHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhCCCCCCCHHHHHhhCCCcccCCcccchHHHHHHHHHhCC
Q 012919          157 LYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGV  236 (453)
Q Consensus       157 ~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~I~~ii~~~P~lL~~s~e~~l~~~l~fL~~lGv  236 (453)
                      ++|+++|+++++|.++++++|.++.++.++++.|+++||.+.|++..+++++++++|++|..++++++.|.++||+++|+
T Consensus         2 ~~~~~~gf~~~~i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~   81 (345)
T PF02536_consen    2 DLLKNHGFSDSQISKLIRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGL   81 (345)
T ss_dssp             HHHHHHHHHTS-HHHHHH-H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS
T ss_pred             hHHHHcCCCHHHHHHHHHhCCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcC
Confidence            57899999999999999999999999999999999999999999999999999999999999988999999999999999


Q ss_pred             ChhhHHHHHHhcccccccchh-hHHHHHHHHHHcCCChHHHHHHhhhCCceeEechhhcHHHHHHHHhhcCCChh---HH
Q 012919          237 DKTQWAKVIQRFPAVLTYSRQ-KVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVS---VL  312 (453)
Q Consensus       237 s~~~i~~il~~~P~iL~~s~~-~l~~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~~lG~~~~---~i  312 (453)
                      +++++.+++.++|++|+.+.+ ++.+++.||+++|++++.+.+++..+|..+...  +++++.++++.++|++..   ++
T Consensus        82 s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~--~~~~~~v~~l~~lG~~~~~~~~v  159 (345)
T PF02536_consen   82 SDEDIVKVLKRYPRILSFSVEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSS--EKIKERVEFLKELGFDPEKIGRV  159 (345)
T ss_dssp             -HHHHHHHHHH-SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS---HHHHCHHHHHCCCTSSHHHHCCC
T ss_pred             CHHHHHHHHHhcchhhccchHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccch--hHHHHHHHHHHHhCCCchhhccc
Confidence            999999999999999998775 699999999999999998888888888877665  589999999999999964   56


Q ss_pred             HhhcccccccccccccchhHHHHHHhCCChHHHHHHhhhccccccccchh------------------------------
Q 012919          313 LQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTE------------------------------  362 (453)
Q Consensus       313 i~~~P~iL~~s~e~~l~~~~~~L~~~G~s~eev~~mi~~~P~lL~~sl~~------------------------------  362 (453)
                      +.++|.++..+.+++++++++||+++|++.+++.+++.++|.++.+|+++                              
T Consensus       160 i~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~~~i~~~p~il~~~  239 (345)
T PF02536_consen  160 IAKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEERVIKKFPQILSLS  239 (345)
T ss_dssp             HHHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC---------------------------THH
T ss_pred             ccccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceecccccccccccccccccccccccccccccccccccc
Confidence            88999988888889999999999999999999999999999999999754                              


Q ss_pred             --hHhHHHHHHHHcCCChHHH----hhcCccccccccccchhhHHHHHH-hCcccC----hhhhhccchHhHHHHHHHH-
Q 012919          363 --NLIPKWEFFLTMDYDKSEL----VKFPQYFGYSLEERIKPRYARVKV-HGVKLL----LNQVLSLSGSNFENVLKKK-  430 (453)
Q Consensus       363 --~L~~k~~fL~~~g~~~~~l----~~~P~~L~~Sle~rIkpR~~~L~~-lg~~~~----L~~~L~~sd~~F~~~~~~~-  430 (453)
                        ++.++++||.++|++.+++    .++|++|.+|.|+ ++|+++|+.. .|....    ...+|+.|   ..++++.| 
T Consensus       240 ~~~l~~~i~~L~~lG~s~~ei~~mv~~~P~iL~~s~e~-l~~k~~fl~~~m~~~~~~i~~~P~~l~~s---Le~ri~PR~  315 (345)
T PF02536_consen  240 EEKLKPKIEFLQSLGFSEEEIAKMVRRFPQILSYSIEK-LKPKFEFLVKEMGLPLEEIVEFPQYLSYS---LEKRIKPRY  315 (345)
T ss_dssp             HHHHHHHHHHHHTTT--HHHHHHHHHHSGGGGGS-HHH-HHHHHHHHHHCCT--HHHHHHSCHHHCS----HHHHHHHHH
T ss_pred             hHhHHHHHHHHHHhcCcHHHHHHHHHhCcchhhcchhh-hhHHHHHHHHHhCcCHHHHhhCCceeEec---hhhhhhhHH
Confidence              5899999999999999886    6899999999985 9999999875 444311    12345544   34667777 


Q ss_pred             --HHhhhccC
Q 012919          431 --IEKALSDG  438 (453)
Q Consensus       431 --~~~~~~~~  438 (453)
                        |..+.+.|
T Consensus       316 ~~~~~l~~~g  325 (345)
T PF02536_consen  316 EVLKVLKSKG  325 (345)
T ss_dssp             HHHHTT--TT
T ss_pred             HHHHHHHHCc
Confidence              66676666

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.91  E-value=1.4e-24  Score=224.85  Aligned_cols=272  Identities=33%  Similarity=0.525  Sum_probs=210.8

Q ss_pred             CChHHHhhccccccCCCCCChHHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhCCCCCCCHHHHHhh
Q 012919          132 LDSKKLKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGK  211 (453)
Q Consensus       132 ~d~~~~~a~~r~l~~~~~~~l~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~I~~ii~~  211 (453)
                      .+...+....+-+......+...++++|.++|++..+|.+++..+|.++..+.++.+.|+..+|...|++...+.+++..
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g~~~s~l~~i~s~  150 (413)
T KOG1267|consen   71 LSIKLARKLSREVSSEDSVNPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLGLPSSELSSIVSV  150 (413)
T ss_pred             cchhhHHHHHHHHHhhhccCcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhccCccccccchhhhc
Confidence            33444444444455567788999999999999999999999999999998888888888888888999999999999888


Q ss_pred             CCCcccCCcccchHHHHHHHH-----------------------------------HhCCChhhHHHHHHhcccccc---
Q 012919          212 RPQLCGISLSENLIPTMTFLE-----------------------------------NLGVDKTQWAKVIQRFPAVLT---  253 (453)
Q Consensus       212 ~P~lL~~s~e~~l~~~l~fL~-----------------------------------~lGvs~~~i~~il~~~P~iL~---  253 (453)
                      .|.+|+.+..+++.+.++|++                                   ++|+..+++...+..+|+.+.   
T Consensus       151 ~~~il~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~lg~~~~~L~~~l~~~~~~~~~~~  230 (413)
T KOG1267|consen  151 VPKILLKSKGESLSTFIEFLKSIPPELLSSVVERLLTPVPSFLLNENSVERLDIRRELGVKPRLLKSLLESQPRPVLLYL  230 (413)
T ss_pred             cHHHHHhhcCCchhhHHHHhhccchhhhhhHHHHhccccccccccccccccchhhHHhCCCHHHHHHHHhcCccceeeeh
Confidence            888776554445555554444                                   455555556544444444332   


Q ss_pred             -----------c------------------ch-hhHHHHHHHHHHcCCChHHHHHHhhhCCceeEechhhcHHHHHHHHh
Q 012919          254 -----------Y------------------SR-QKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFR  303 (453)
Q Consensus       254 -----------~------------------s~-~~l~~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~  303 (453)
                                 +                  +. +.+++++++|+++|++.++|.+++.++|++|+++.+ ++..+++|+.
T Consensus       231 ~l~~~~~~i~~~g~~p~~~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l~~s~~-~~~~~~~~~~  309 (413)
T KOG1267|consen  231 KLKARLPFLLTLGFDPKTREFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCPQILGYSVK-KNLKTTEYLL  309 (413)
T ss_pred             hhhhhhhhHHHhccCCchhHHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHHHHHhCchheEeehh-hhhHHHHHHH
Confidence                       1                  22 347777777777777777777777777777777764 4555666666


Q ss_pred             hcCCChhHHHhhcccccccccccccchhHHHHHHhCCChHHHHHHhhhccccccccchhhHhHHHHHHH-HcCCChHHHh
Q 012919          304 SLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFL-TMDYDKSELV  382 (453)
Q Consensus       304 ~lG~~~~~ii~~~P~iL~~s~e~~l~~~~~~L~~~G~s~eev~~mi~~~P~lL~~sl~~~L~~k~~fL~-~~g~~~~~l~  382 (453)
                      +.   ..+ +.++|+++.++ +..+.++++|+...|++..++..|+.++|+++.+|+++.++++.+|+. .|+++.++++
T Consensus       310 ~~---~~~-~~k~p~~l~~s-~~~l~~~ie~l~~~g~~~~q~~~~~~~~Pq~l~~s~~~~~~~~~~~~~~~~~~p~~~~~  384 (413)
T KOG1267|consen  310 KN---PKH-ILKFPQLLRSS-EDKLKPRIEFLLSLGFSDVQILEMVKRFPQYLSFSLEKILKRKYEYLLKGLLRPLSALV  384 (413)
T ss_pred             hc---chh-hhhhhhhhhcc-chhhhhhHHHHHHcCCcHHHHHHHHhhccHHhhhhHHhhhhhhHHHHHHHcCchHHHHh
Confidence            55   222 66777777555 567999999999999999999999999999999997558999999998 7999999999


Q ss_pred             hcCccccccccccchhhHHHHHHhCcc
Q 012919          383 KFPQYFGYSLEERIKPRYARVKVHGVK  409 (453)
Q Consensus       383 ~~P~~L~~Sle~rIkpR~~~L~~lg~~  409 (453)
                      .+|+++.|++|+|+.||+....+++.+
T Consensus       385 ~~p~~~~y~le~ri~pr~~~~~~~~~~  411 (413)
T KOG1267|consen  385 SFPAFFGYSLEKRIRPRFNVIKKLGVK  411 (413)
T ss_pred             ccchhhccchhhcchhHHHHHHHHhcc
Confidence            999999999999999999999888765

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.74  E-value=2.9e-17  Score=170.44  Aligned_cols=308  Identities=23%  Similarity=0.348  Sum_probs=235.8

Q ss_pred             HHHHHHHHHcCCChHHHHHHhhcChHHHHHHHhhhHhhhhhhhcccCccchHHHHH---hhHH--HHHHhhhhhhhhHHH
Q 012919           31 AVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGRELTTLEIRD---ALTP--YLESLLEEYGNVLVD  105 (453)
Q Consensus        31 ~~~~~~l~~~g~~~~~a~~i~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~lEslg~~~~~~l~~  105 (453)
                      ..+.++|+..|++.+.-+.|...+|..+..=.+++-..|. +.+...+++.+.+.+   + +|  ++.++|.+ ....++
T Consensus        92 ~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~-~~l~~~g~~~s~l~~i~s~-~~~il~~~~~~~-~~~~~~  168 (413)
T KOG1267|consen   92 SSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKL-RLLDSLGLPSSELSSIVSV-VPKILLKSKGES-LSTFIE  168 (413)
T ss_pred             HHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhh-hhhhccCccccccchhhhc-cHHHHHhhcCCc-hhhHHH
Confidence            4456789999999999999999998888666666655444 334444555544433   3 34  66677744 334677


Q ss_pred             HHHcCCCCCCcccccccccCCCCCCCCChHHHhhcccccc-CCCCCChHHHHHHHHhcCCCHHHHHHHHHhCCCccccCc
Q 012919          106 LVENFPNAPPPAKQKAVAPVSPPVSTLDSKKLKAISRVSE-LDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSL  184 (453)
Q Consensus       106 ~v~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~a~~r~l~-~~~~~~l~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~  184 (453)
                      +|.+.|.-+..++.      .....           .+.. ......+. .++++..+|....++..++..+|.......
T Consensus       169 ~l~~~~~~~~~s~~------~~~~~-----------~~~~~~~~~~~v~-~~~~~~~lg~~~~~L~~~l~~~~~~~~~~~  230 (413)
T KOG1267|consen  169 FLKSIPPELLSSVV------ERLLT-----------PVPSFLLNENSVE-RLDIRRELGVKPRLLKSLLESQPRPVLLYL  230 (413)
T ss_pred             HhhccchhhhhhHH------HHhcc-----------ccccccccccccc-cchhhHHhCCCHHHHHHHHhcCccceeeeh
Confidence            88876531111000      00000           1111 12233444 789999999999999999999998776542


Q ss_pred             CCChHHHHHHHHhCCCCCCCHHHHHhhCCCcccCCcccchHHHHHHHHHhCCChhhHHHHHHhcccccccchhhHHHHHH
Q 012919          185 EGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVD  264 (453)
Q Consensus       185 ~~~l~~~v~fL~~lG~~~~~I~~ii~~~P~lL~~s~e~~l~~~l~fL~~lGvs~~~i~~il~~~P~iL~~s~~~l~~~v~  264 (453)
                        .+...+.++..+|+.+..  +++.+.|.++.++.++.+++++++|+++|++.+++..++.++|++|+++.+++..+++
T Consensus       231 --~l~~~~~~i~~~g~~p~~--~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l~~s~~~~~~~~~  306 (413)
T KOG1267|consen  231 --KLKARLPFLLTLGFDPKT--REFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCPQILGYSVKKNLKTTE  306 (413)
T ss_pred             --hhhhhhhhHHHhccCCch--hHHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHHHHHhCchheEeehhhhhHHHH
Confidence              577788999999988766  8889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCChHHHHHHhhhCCceeEechhhcHHHHHHHHhhcCCChh---HHHhhcccccccccccccchhHHHHH-HhCC
Q 012919          265 FLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVS---VLLQRCPQSLGCSIEANLKPVTEFFL-ERGF  340 (453)
Q Consensus       265 fL~~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~~lG~~~~---~ii~~~P~iL~~s~e~~l~~~~~~L~-~~G~  340 (453)
                      |+.+.  +++     +.++|+++.++ +.++.++++|+..+|++..   .++.++|++++++++..++...+|+. .++.
T Consensus       307 ~~~~~--~~~-----~~k~p~~l~~s-~~~l~~~ie~l~~~g~~~~q~~~~~~~~Pq~l~~s~~~~~~~~~~~~~~~~~~  378 (413)
T KOG1267|consen  307 YLLKN--PKH-----ILKFPQLLRSS-EDKLKPRIEFLLSLGFSDVQILEMVKRFPQYLSFSLEKILKRKYEYLLKGLLR  378 (413)
T ss_pred             HHHhc--chh-----hhhhhhhhhcc-chhhhhhHHHHHHcCCcHHHHHHHHhhccHHhhhhHHhhhhhhHHHHHHHcCc
Confidence            99877  333     78999999777 5799999999999999754   45667999999998767788888887 5788


Q ss_pred             ChHHHHHHhhhccccccccchhhHhHHHHHHHHcC
Q 012919          341 TVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMD  375 (453)
Q Consensus       341 s~eev~~mi~~~P~lL~~sl~~~L~~k~~fL~~~g  375 (453)
                      +.+.+    ..+|..+.|+++.++.|+.......+
T Consensus       379 p~~~~----~~~p~~~~y~le~ri~pr~~~~~~~~  409 (413)
T KOG1267|consen  379 PLSAL----VSFPAFFGYSLEKRIRPRFNVIKKLG  409 (413)
T ss_pred             hHHHH----hccchhhccchhhcchhHHHHHHHHh
Confidence            75554    48999999999999999998877543

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=96.81  E-value=0.001  Score=41.88  Aligned_cols=25  Identities=48%  Similarity=0.967  Sum_probs=9.6

Q ss_pred             HhcccccccchhhHHHHHHHHHHcC
Q 012919          246 QRFPAVLTYSRQKVKQTVDFLYEMG  270 (453)
Q Consensus       246 ~~~P~iL~~s~~~l~~~v~fL~~lG  270 (453)
                      .++|++|+++.++++++++||+++|
T Consensus         5 ~~~P~il~~~~~~l~~~~~~l~~~g   29 (31)
T smart00733        5 KKFPQILGYSEKKLKPKVEFLKELG   29 (31)
T ss_pred             hhCcCcccccHHHhhHHHHHHHHcC
Confidence            3333333333333333333333333

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=96.78  E-value=0.00094  Score=42.02  Aligned_cols=28  Identities=25%  Similarity=0.628  Sum_probs=18.5

Q ss_pred             HhhhccccccccchhhHhHHHHHHHHcCC
Q 012919          348 MISRFGALYTFSLTENLIPKWEFFLTMDY  376 (453)
Q Consensus       348 mi~~~P~lL~~sl~~~L~~k~~fL~~~g~  376 (453)
                      ++.++|.+++++ +++++++++||.++|+
T Consensus         3 ~~~~~P~il~~~-~~~l~~~~~~l~~~g~   30 (31)
T smart00733        3 ILKKFPQILGYS-EKKLKPKVEFLKELGF   30 (31)
T ss_pred             hhhhCcCccccc-HHHhhHHHHHHHHcCC
Confidence            456666666666 5666666666666665

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=90.66  E-value=2.9  Score=42.31  Aligned_cols=40  Identities=18%  Similarity=0.281  Sum_probs=18.8

Q ss_pred             cccccccccc-chhHHHHH-HhCCChHHHHHHhhhcccccccc
Q 012919          319 SLGCSIEANL-KPVTEFFL-ERGFTVEEIGTMISRFGALYTFS  359 (453)
Q Consensus       319 iL~~s~e~~l-~~~~~~L~-~~G~s~eev~~mi~~~P~lL~~s  359 (453)
                      +|++.+++++ ...+..|. ++|++ +.+..|+.+||.|+..|
T Consensus       250 lLSLTveKr~~~~~L~~fr~ef~lp-~k~~~~l~rHPgIFYvS  291 (335)
T PF11955_consen  250 LLSLTVEKRTEVDHLTHFRKEFGLP-QKFRRLLLRHPGIFYVS  291 (335)
T ss_pred             HHHhhhhhhccHHHHHHHHHHhCCc-HHHHHHHHhCCCeEEEe
Confidence            4444443322 22333443 45554 44555555556555555

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=90.41  E-value=0.84  Score=41.67  Aligned_cols=114  Identities=18%  Similarity=0.247  Sum_probs=62.3

Q ss_pred             HHHHHHhcCCCHHHHHHHHHhCCC----ccccCcCCChHHHHHHHHhCCCCCCCHHHHHhhCCCcccCCcccchHHHHHH
Q 012919          155 QILYLIELGMDLEKIKLITRRFPA----FSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTF  230 (453)
Q Consensus       155 ~l~~L~~lGls~~~i~~iv~~~P~----lL~~~~~~~l~~~v~fL~~lG~~~~~I~~ii~~~P~lL~~s~e~~l~~~l~f  230 (453)
                      .+..|++.|++.++|..++.....    ++.... ..++..++-|..   ....+..++...+.. ...-.-+....++.
T Consensus        50 ~I~~lr~~G~sL~eI~~ll~~~~~~~~~~L~~~~-~~l~~ei~~L~~---~~~~l~~ll~~~~~~-~~~~~V~~~~w~~l  124 (172)
T cd04790          50 QICAYRSAGVSLEDIRSLLQQPGDDATDVLRRRL-AELNREIQRLRQ---QQRAIATLLKQPTLL-KEQRLVTKEKWVAI  124 (172)
T ss_pred             HHHHHHHcCCCHHHHHHHHhcCChhHHHHHHHHH-HHHHHHHHHHHH---HHHHHHHHHHHHhhc-cccccCCHHHHHHH
Confidence            456789999999999998865432    111111 112222222221   122344444433332 11111234556666


Q ss_pred             HHHhCCChhhHHHHHHhcccccccchhhHHHHHHHHHHcCCChHHHHHH
Q 012919          231 LENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKV  279 (453)
Q Consensus       231 L~~lGvs~~~i~~il~~~P~iL~~s~~~l~~~v~fL~~lG~~~~~i~~i  279 (453)
                      ++..|+++.++.+.=..+    .  ...-..-.+||.++|++++++..+
T Consensus       125 ~~~~g~~~~~m~~wh~~f----e--~~~p~~h~~~l~~~g~~~~~~~~i  167 (172)
T cd04790         125 LKAAGMDEADMRRWHIEF----E--KMEPEAHQEFLQSLGIPEDEIERI  167 (172)
T ss_pred             HHHcCCChHHHHHHHHHH----H--HhCcHHHHHHHHHcCCCHHHHHHH
Confidence            778898888765432221    1  123455678999999999998654

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	453
3m66_A	270	Crystal Structure Of Human Mitochondrial Transcript		2e-07
3opg_A	298	Crystal Structure Of Human Mitochondrial Transcript		3e-07

>pdb|3M66|A Chain A, Crystal Structure Of Human Mitochondrial Transcription Termination Factor 3 Length = 270

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 95/195 (48%), Gaps = 16/195 (8%)
Query: 215 LCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAE 274
           L  +   +++   + FL+++G++  Q    + +  A+ +   + +K  V +L+    S  
Sbjct: 32  LLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKA 91
Query: 275 SIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSV-----LLQRCPQSLGCSIEANLK 329
            + +++ + P ++++S+ E+L     +F+   +++SV     L+ R P+ L  S+E   +
Sbjct: 92  DVAQMVRKAPFLLNFSV-ERLDNRLGFFQK-ELELSVKKTRDLVVRLPRLLTGSLEPVKE 149
Query: 330 PVTEFFLERGFTVEEIGTMISRFGALYT---FSLTENLIPKWEFFLT-MDYDKSELVKFP 385
            +  + LE GF   EI  MI+R   + T     LTE     ++F    M      +VKFP
Sbjct: 150 NMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTET----FDFVHNVMSIPHHIIVKFP 205
Query: 386 QYFGYSLEERIKPRY 400
           Q F   L  ++K R+
Sbjct: 206 QVFNTRL-FKVKERH 219

>pdb|3OPG|A Chain A, Crystal Structure Of Human Mitochondrial Transcription Termination Factor 3 Length = 298

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 95/195 (48%), Gaps = 16/195 (8%)
Query: 215 LCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAE 274
           L  +   +++   + FL+++G++  Q    + +  A+ +   + +K  V +L+    S  
Sbjct: 60  LLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKA 119
Query: 275 SIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSV-----LLQRCPQSLGCSIEANLK 329
            + +++ + P ++++S+ E+L     +F+   +++SV     L+ R P+ L  S+E   +
Sbjct: 120 DVAQMVRKAPFLLNFSV-ERLDNRLGFFQK-ELELSVKKTRDLVVRLPRLLTGSLEPVKE 177
Query: 330 PVTEFFLERGFTVEEIGTMISRFGALYT---FSLTENLIPKWEFFLT-MDYDKSELVKFP 385
            +  + LE GF   EI  MI+R   + T     LTE     ++F    M      +VKFP
Sbjct: 178 NMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTET----FDFVHNVMSIPHHIIVKFP 233
Query: 386 QYFGYSLEERIKPRY 400
           Q F   L  ++K R+
Sbjct: 234 QVFNTRL-FKVKERH 247

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	453
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	5e-57
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	6e-22
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	2e-06
3mva_O	343	Transcription termination factor, mitochondrial; a	3e-46
3mva_O	343	Transcription termination factor, mitochondrial; a	1e-25
3mva_O	343	Transcription termination factor, mitochondrial; a	2e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score =  188 bits (479), Expect = 5e-57
 Identities = 52/258 (20%), Positives = 113/258 (43%), Gaps = 16/258 (6%)

Query: 189 KPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRF 248
              ++ L+ LG+  ++I         L  +   +++   + FL+++G++  Q    + + 
Sbjct: 6   SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKN 65

Query: 249 PAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGV- 307
            A+ +   + +K  V +L+    S   + +++ + P ++++S+E        + + L + 
Sbjct: 66  HAIFSEDLENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELS 125

Query: 308 --DVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLI 365
                 L+ R P+ L  S+E   + +  + LE GF   EI  MI+R   + T +    L 
Sbjct: 126 VKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANK-MKLT 184

Query: 366 PKWEFFL-TMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLL---------LNQV 415
             ++F    M      +VKFPQ F   L  ++K R+  +   G             L+++
Sbjct: 185 ETFDFVHNVMSIPHHIIVKFPQVFNTRL-FKVKERHLFLTYLGRAQYDPAKPNYISLDKL 243

Query: 416 LSLSGSNF-ENVLKKKIE 432
           +S+    F E + K  ++
Sbjct: 244 VSIPDEIFCEEIAKASVQ 261

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score = 94.1 bits (234), Expect = 6e-22
 Identities = 32/175 (18%), Positives = 70/175 (40%), Gaps = 8/175 (4%)

Query: 148 SSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLL-DLGIPKAQIP 206
              +L+ ++ YL         +  + R+ P    +S+E ++   + F   +L +   +  
Sbjct: 72  DLENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTR 130

Query: 207 TILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFL 266
            ++ + P+L   SL         +   LG    +   +I R P +LT ++ K+ +T DF+
Sbjct: 131 DLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFV 190

Query: 267 Y-EMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSL 320
           +  M +    I     + P + +  +  K++    +   LG       +    SL
Sbjct: 191 HNVMSIPHHII----VKFPQVFNTRL-FKVKERHLFLTYLGRAQYDPAKPNYISL 240

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 17/131 (12%), Positives = 39/131 (29%), Gaps = 12/131 (9%)

Query: 326 ANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSELVKF- 384
            +     +  +  G  + +I         L      +++     F   +  + ++L  F 
Sbjct: 3   VDHSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFL 62

Query: 385 ---PQYFGYSLEERIKPRYARVKVHGV-----KLLLNQVLSLSGSNFENVLKK--KIEKA 434
                 F   L E +K R A +            ++ +   L   + E +  +    +K 
Sbjct: 63  TKNHAIFSEDL-ENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKE 121

Query: 435 LSDGGHENGKL 445
           L     +   L
Sbjct: 122 LELSVKKTRDL 132

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score =  162 bits (412), Expect = 3e-46
 Identities = 59/315 (18%), Positives = 121/315 (38%), Gaps = 21/315 (6%)

Query: 132 LDSKKLKAISRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPV 191
           +D    +            + +   ++L+  G   E I  I  R+P     + E  +   
Sbjct: 31  VDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKR 89

Query: 192 VEFLLDLGIPKAQIPTILGKRPQLCGISLSE-NLIPTMTFLENLGVDKTQWAKVIQRFPA 250
            +    +     +I  IL + P+    S +  NL   + FL ++G+ +    +++   P 
Sbjct: 90  WDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPR 149

Query: 251 VLTYSRQKVKQTVDFLYEMGLS------AESIGKVLTRCPNIISYSIEEKLRPTAEYFRS 304
             + S    KQ V+FL   GLS      A+ + K++ + P I+  S  ++++   E+ RS
Sbjct: 150 TFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRS 208

Query: 305 LGVD-----VSVLLQRCPQSLGCS---IEANLKPVTEFFLERGFTVEEIGTMISRFGALY 356
                    + ++     + L  S      +   + E     G T EE+   +  +  + 
Sbjct: 209 TFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVI 268

Query: 357 TFSLTENLIPKWEFFLTMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVL 416
             +  +    K +  +  +   S++++ P+    S+   +K R   +   G  L    + 
Sbjct: 269 FLAE-KKFNDKIDCLMEENISISQIIENPRVLDSSI-STLKSRIKELVNAGCNLSTLNIT 326

Query: 417 SLSGS--NFENVLKK 429
            LS S   +E  LKK
Sbjct: 327 LLSWSKKRYEAKLKK 341

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score =  106 bits (265), Expect = 1e-25
 Identities = 42/251 (16%), Positives = 92/251 (36%), Gaps = 25/251 (9%)

Query: 174 RRFPAFSYYSLEGK---IKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTF 230
                   ++ + +    + +++ LL +G+    I     ++P +    +  N      F
Sbjct: 2   HMLFGVKCHNTDSEPLKNEDLLKNLLTMGVD---IDMARKRQPGVFHRMI-TNEQDLKMF 57

Query: 231 LENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYS 290
           L + G  K   A +I R+P  +T + + + +  D   ++  S   I  +L R P     S
Sbjct: 58  LLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRS 117

Query: 291 IEEK-LRPTAEYFRSLGV---DVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFT----- 341
                L    ++  S+G+    +  LL   P++   S++   K + EF    G +     
Sbjct: 118 NNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLD-LNKQMVEFLQAAGLSLGHND 176

Query: 342 -VEEIGTMISRFGALYTFSLTENLIPKWEFFL-TMDYDKSELVKF-----PQYFGYSLEE 394
             + +  +I +   +   S T+ +    EF   T + +  EL+        +    S + 
Sbjct: 177 PADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDY 235

Query: 395 RIKPRYARVKV 405
             +      + 
Sbjct: 236 ARRSYANIKEK 246

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score = 79.3 bits (195), Expect = 2e-16
 Identities = 52/315 (16%), Positives = 108/315 (34%), Gaps = 34/315 (10%)

Query: 7   GVNGSSSLRVVPSTLLAAEKEEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLH 66
           GV+   + +  P  +        + +   FL  +G SK V A  I++    I      L 
Sbjct: 30  GVDIDMARKRQPG-VFHRMITNEQDLKM-FLLSKGASKEVIASIISRYPRAITRTPENLS 87

Query: 67  SVHKSRYLVGRELTTLEIRDALTPYLESLLEEYGNVLVDLVENFPNAPPPAKQKAVAPVS 126
              +         + LEI + L    ES      N+ ++    F               S
Sbjct: 88  K--RWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFL-------------YS 132

Query: 127 PPVSTLDSKKLKAISRVSELDSSGDLRPQILYLIELGMDL------EKIKLITRRFPAFS 180
             ++     +L   +  +  +S    +  + +L   G+ L      + ++ I  + P   
Sbjct: 133 VGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFIL 192

Query: 181 YYSLEGKIKPVVEFLLD-LGIPKAQIPTILGKRP----QLCGISLSENLIPTMTFLENLG 235
             S + ++K  +EFL     +   ++  ++         L       +       L +LG
Sbjct: 193 IQSTK-RVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLG 251

Query: 236 VDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKL 295
             + +  K +  +P V+  + +K    +D L E  +S   I       P ++  S    L
Sbjct: 252 CTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQI----IENPRVLDSS-ISTL 306

Query: 296 RPTAEYFRSLGVDVS 310
           +   +   + G ++S
Sbjct: 307 KSRIKELVNAGCNLS 321

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 5e-10
 Identities = 72/540 (13%), Positives = 145/540 (26%), Gaps = 202/540 (37%)

Query: 9   NGSSSLRVVPSTLLAAEKEEAKAVLTLFLKK--QGLSKGVAARTINKS---DLFIDHLVS 63
           +  S    +  TLL+ ++E  +  +   L+   + L   +       S    ++I+    
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ-RD 117

Query: 64  RLHSVHK--SRYLVGRELTTLEIRDALT-----PYLESLLEEYG------NVLV------ 104
           RL++ ++  ++Y V R    L++R AL        +  L+   G        +       
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV--LI--DGVLGSGKTWVALDVCLS 173

Query: 105 -DLVENFPN--------------------------APPPAKQKAVAPVSPPVSTLDSKKL 137
             +                                  P    ++    +  +     +  
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA- 232

Query: 138 KAISRVSELDSSGDLRPQILYL--------IELGMDLE-KIKLITRRF---------PAF 179
                +  L  S      +L L             +L  KI L+T RF            
Sbjct: 233 ----ELRRLLKSKPYENCLLVLLNVQNAKAWN-AFNLSCKI-LLTTRFKQVTDFLSAATT 286

Query: 180 SYYSLEGKIKPVVE------FLLDLGIPKAQIPTILGKRPQLCGIS-LSENLIPTMTFLE 232
           ++ SL+     +         L  L      +P       ++   +    ++I       
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP------REVLTTNPRRLSII------- 333

Query: 233 NLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIE 292
                    A+ I+   A     +      +                      II  S+ 
Sbjct: 334 ---------AESIRDGLATWDNWKHVNCDKLT--------------------TIIESSLN 364

Query: 293 EKLRPTA--EYFRSLGV---DVSV----------------------------LLQRCPQS 319
             L P    + F  L V      +                            L+++ P+ 
Sbjct: 365 V-LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 320 LGCSI-----EANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTM 374
              SI     E  +K   E+ L R        +++  +    TF  +++LIP +      
Sbjct: 424 STISIPSIYLELKVKLENEYALHR--------SIVDHYNIPKTFD-SDDLIPPYLD---- 470

Query: 375 DYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLLLNQVLSLSGSNFENVLKKKIEKA 434
            Y       F  + G+ L+      +         + L+         F   L++KI   
Sbjct: 471 QY-------FYSHIGHHLK---NIEHPERMTLFRMVFLD-------FRF---LEQKIRHD 510

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 8e-08
 Identities = 76/492 (15%), Positives = 157/492 (31%), Gaps = 127/492 (25%)

Query: 30  KAVLTLFLKK----------QGLSKGVAARTINKSDLFIDHLVSRLHSVHKSRYLVGREL 79
           K +L++F             Q + K +    ++K +  IDH++    +V  +  L     
Sbjct: 19  KDILSVFEDAFVDNFDCKDVQDMPKSI----LSKEE--IDHIIMSKDAVSGTLRL----F 68

Query: 80  TTLEIR--DALTPYLESLLE-EYGNVLVDLVENFPNAPPPAKQKAVAPVSPPVSTLDSKK 136
            TL  +  + +  ++E +L   Y   L+  ++     P    +  +       +      
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYK-FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 137 LKAISR---VSELDSS-GDLRPQ---ILYLIELGM----------DLEKIKLITRRFPAF 179
              +SR     +L  +  +LRP    ++     G+          D+     +  +    
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLID----GVLGSGKTWVALDVCLSYKVQCKMDFK 183

Query: 180 SYY-SLEGKIKP--VVEFLLDLGIPKAQIPTILGKRP-QLCGISLSEN--------LIPT 227
            ++ +L+    P  V+E L  L     QI      R      I L  +        L+ +
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKL---LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 228 MTFLENLGV-DKTQWAKVIQRF----PAVLTYSRQK-VKQTVDFLYEMGLSAESIGKVLT 281
             +   L V    Q AK    F      +LT +R K V   +       +S +     LT
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLT-TRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 282 RCPNIISYSIEEKLRPTAEYFRSLGVDVSVL-LQRC---PQSLGCSIEANLK--PVT-EF 334
                     +E      +Y   L      L  +     P+ L   I  +++    T + 
Sbjct: 300 P---------DEVKSLLLKY---LDCRPQDLPREVLTTNPRRLS-IIAESIRDGLATWDN 346

Query: 335 FLERGFTVEEIGTMIS-------------RFGALYTFSLTENL-IPK------W------ 368
           +       +++ T+I               F  L  F    +  IP       W      
Sbjct: 347 WKH--VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP--PSAHIPTILLSLIWFDVIKS 402

Query: 369 --EFFLTMDYDKSELVKFPQYFGYS-----LEERIKPRYARVKVHGVKLLLNQVLSLSGS 421
                +   +  S + K P+    S     LE ++K       +H  + +++        
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE-NEYALH--RSIVDHYNIPKTF 459

Query: 422 NFENVLKKKIEK 433
           + ++++   +++
Sbjct: 460 DSDDLIPPYLDQ 471

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 4e-05
 Identities = 54/397 (13%), Positives = 121/397 (30%), Gaps = 112/397 (28%)

Query: 2   MTGDSGVNGSSSLRVVPSTLLAAEKEEAKAVLTLFLKKQGLSKGV---AARTINKSDLFI 58
           + G SG            T +A +   +  V             +     +  N  +  +
Sbjct: 158 VLG-SG-----------KTWVALDVCLSYKVQCKM------DFKIFWLNLKNCNSPETVL 199

Query: 59  DHLVSRLHSVHKSRYLVGRELTTLEIR-DALTPYLESLLEE--YGNVLVDL--------V 107
           + L   L+ +  +        + +++R  ++   L  LL+   Y N L+ L         
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259

Query: 108 ENF---------------PNAPPPAKQKAVAPVSPPVSTLDSKKLKAI-SRVSELDSSGD 151
             F                +    A    +  +     TL   ++K++  +  +     D
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHI-SLDHHSMTLTPDEVKSLLLKYLDCRPQ-D 317

Query: 152 LRPQILYLIELGMDLEKIKLITRRFPA-FSYY------SLEGKIKPVVEFL--------- 195
           L  ++L      + +  I    R   A +  +       L   I+  +  L         
Sbjct: 318 LPREVLTTNPRRLSI--IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 196 LDLGI-PK-AQIPTILGKRPQLC---GISLSENLIPTMTFLENLGVDKTQW--------- 241
             L + P  A IPTIL     L       +  +++  +  L    + + Q          
Sbjct: 376 DRLSVFPPSAHIPTIL-----LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430

Query: 242 ----------------AKVIQRFPAVLTY-SRQKVKQTVD---FLYEMG--LSAESIGKV 279
                             ++  +    T+ S   +   +D   + + +G  L      + 
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH-IGHHLKNIEHPER 489

Query: 280 LTRCPNI-ISYS-IEEKLRPTAEYFRSLGVDVSVLLQ 314
           +T    + + +  +E+K+R  +  + + G  ++ L Q
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 43/258 (16%), Positives = 83/258 (32%), Gaps = 82/258 (31%)

Query: 17  VPSTLLA-----AEKEEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRLH--SVH 69
           +P+ LL+       K +   V+    K   + K     TI+   ++++  V   +  ++H
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446

Query: 70  KS---RYLVGRELTTLEIRDALTPYLES-----------------LLEEYGNVLVDLVEN 109
           +S    Y + +   T +  D + PYL+                   +  +  V +D    
Sbjct: 447 RSIVDHYNIPK---TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF--R 501

Query: 110 FPNAPPPAKQKAVAPVSPPVSTLDSKKLKAISRVSELDSSGDLRPQILYLIELGMDLEKI 169
           F       +QK           +        +  S L++   L+    Y           
Sbjct: 502 F------LEQK-----------IRHDSTAWNASGSILNTLQQLK---FYK---------- 531

Query: 170 KLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMT 229
             I    P +     E  +  +++FL     PK +   I  K   L  I+L         
Sbjct: 532 PYICDNDPKY-----ERLVNAILDFL-----PKIEENLICSKYTDLLRIALMA------- 574

Query: 230 FLENLGVDKTQWAKVIQR 247
             E+  + +    K +QR
Sbjct: 575 --EDEAIFEEA-HKQVQR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	453
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	99.97
4fp9_B	335	Mterf domain-containing protein 2; modification en	99.94
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	99.3
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	98.89
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	91.2
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	90.89

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=1.6e-47  Score=385.92  Aligned_cols=304  Identities=19%  Similarity=0.265  Sum_probs=270.3

Q ss_pred             HhhHHHHHHhhhhhhhhHHHHHHcCCCCCCcccccccccCCCCCCCCChHHHhhccccccCCCCCChHHHHHHHHhcCCC
Q 012919           86 DALTPYLESLLEEYGNVLVDLVENFPNAPPPAKQKAVAPVSPPVSTLDSKKLKAISRVSELDSSGDLRPQILYLIELGMD  165 (453)
Q Consensus        86 ~~~~~~lEslg~~~~~~l~~~v~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~a~~r~l~~~~~~~l~~~l~~L~~lGls  165 (453)
                      +.++.||.++|++..    ..++.+|.+                               .+.+.++++++++||.++|++
T Consensus        20 ~~~v~~L~s~Gl~~~----~~~~~~p~l-------------------------------~~~s~~~~~~vl~fL~~~G~s   64 (343)
T 3mva_O           20 EDLLKNLLTMGVDID----MARKRQPGV-------------------------------FHRMITNEQDLKMFLLSKGAS   64 (343)
T ss_dssp             CCHHHHHHHHTCCHH----HHHHHCGGG-------------------------------GGCSCCCHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCCHH----HHHHhCchh-------------------------------hccCcccHHHHHHHHHHcCCC
Confidence            457789999999833    345556553                               134567889999999999999


Q ss_pred             HHHHHHHHHhCCCccccCcCCChHHHHHHHHhCCCCCCCHHHHHhhCCCc-ccCCcccchHHHHHHHHHhCCChhhHHHH
Q 012919          166 LEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQL-CGISLSENLIPTMTFLENLGVDKTQWAKV  244 (453)
Q Consensus       166 ~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~I~~ii~~~P~l-L~~s~e~~l~~~l~fL~~lGvs~~~i~~i  244 (453)
                      .++|++++.++|.+|.+++ +++.|+++||+++|++++++++++.++|++ ++.+.+++++|+++||+++|++.++++++
T Consensus        65 ~~~i~~iv~~~P~lL~~~~-~~l~p~l~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~l  143 (343)
T 3mva_O           65 KEVIASIISRYPRAITRTP-ENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRL  143 (343)
T ss_dssp             HHHHHHHHHHCGGGGGCCH-HHHHHHHHHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHhCcHHHhCCH-HHHHHHHHHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHH
Confidence            9999999999999999996 489999999999999999999999999995 55443248999999999999999999999


Q ss_pred             HHhcccccccchhhHHHHHHHHHHcCCC------hHHHHHHhhhCCceeEechhhcHHHHHHHHhh-cCCChhH---HHh
Q 012919          245 IQRFPAVLTYSRQKVKQTVDFLYEMGLS------AESIGKVLTRCPNIISYSIEEKLRPTAEYFRS-LGVDVSV---LLQ  314 (453)
Q Consensus       245 l~~~P~iL~~s~~~l~~~v~fL~~lG~~------~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~~-lG~~~~~---ii~  314 (453)
                      +.++|++|+++.+++++++++|+++|++      .+.|.+++.++|++++++ +++++++++||++ +|++..+   ++.
T Consensus       144 l~~~P~il~~~~e~~~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~  222 (343)
T 3mva_O          144 LTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLIC  222 (343)
T ss_dssp             HHHCGGGGTSCHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             HHhCChhheeCHHHhhHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence            9999999999999889999999977664      778999999999999999 6799999999995 9998643   444


Q ss_pred             h-cccccccccccccchhHHHHH----HhCCChHHHHHHhhhccccccccchhhHhHHHHHHHHcCCChHHHhhcCcccc
Q 012919          315 R-CPQSLGCSIEANLKPVTEFFL----ERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSELVKFPQYFG  389 (453)
Q Consensus       315 ~-~P~iL~~s~e~~l~~~~~~L~----~~G~s~eev~~mi~~~P~lL~~sl~~~L~~k~~fL~~~g~~~~~l~~~P~~L~  389 (453)
                      + .|.+++.+. +.+++++.++.    ++|++.+|+..|+.++|.++++| +++|++|++||.+||++.++|+++|++|+
T Consensus       223 ~~~~~~l~~s~-~~l~~~~~~l~e~~~~lG~s~~ev~~~v~~~P~il~~s-~~~l~~k~~fl~~mg~~~~~i~~~P~~l~  300 (343)
T 3mva_O          223 GPGAEILDLSN-DYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLA-EKKFNDKIDCLMEENISISQIIENPRVLD  300 (343)
T ss_dssp             TTTGGGGGCCT-THHHHHHHHHHHHHHTTTCCHHHHHHHHHTCGGGGGSC-HHHHHHHHHHHHTTTCCHHHHHHSGGGGG
T ss_pred             cCChHHhhccH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCchhccc-HHHHHHHHHHHHHcCCCHHHHHhCCHHHh
Confidence            5 468899985 67888887766    68999999999999999999999 57899999999999999999999999999


Q ss_pred             ccccccchhhHHHHHHhCcccChh--hhhccchHhHHHHHHH
Q 012919          390 YSLEERIKPRYARVKVHGVKLLLN--QVLSLSGSNFENVLKK  429 (453)
Q Consensus       390 ~Sle~rIkpR~~~L~~lg~~~~L~--~~L~~sd~~F~~~~~~  429 (453)
                      ||+| ||+|||++|++.|.++.+.  +||++||++|+++|.+
T Consensus       301 ~sle-ri~~R~~~L~~~g~~~~~~~~~~l~~s~~~F~~~~~~  341 (343)
T 3mva_O          301 SSIS-TLKSRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKK  341 (343)
T ss_dssp             SCHH-HHHHHHHHHHTTTCCSSSSCGGGGGSCHHHHHHHHHH
T ss_pred             cCHH-HHHHHHHHHHHCCCCCCCCcchhhcCCHHHHHHHHhc
Confidence            9999 9999999999999998888  9999999999998875

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=5.2e-43  Score=341.67  Aligned_cols=243  Identities=25%  Similarity=0.408  Sum_probs=218.2

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhCCCCCCCHHHHHhhCCCcccCCcccchHHHHHHHH
Q 012919          153 RPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLE  232 (453)
Q Consensus       153 ~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~I~~ii~~~P~lL~~s~e~~l~~~l~fL~  232 (453)
                      .++++||.++|++.++|.+....+|.+|+++++++++|+++||.++|+++++|++++.++|++|++++++ ++|+++||+
T Consensus         6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~   84 (270)
T 3m66_A            6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH   84 (270)
T ss_dssp             HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence            5789999999999999988777777779999888899999999999999999999999999999999965 999999999


Q ss_pred             HhCCChhhHHHHHHhcccccccchhhHHHHHHHH-HHcCCChHHHHHHhhhCCceeEechhhcHHHHHHHHhhcCCChhH
Q 012919          233 NLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFL-YEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSV  311 (453)
Q Consensus       233 ~lGvs~~~i~~il~~~P~iL~~s~~~l~~~v~fL-~~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~~lG~~~~~  311 (453)
                      ++|++++++++++.++|++|+++.++++++++|| +++|++.+++.+++.++|++++++.+ +++               
T Consensus        85 ~~Gls~~~i~~~l~~~P~lL~~s~~~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-~~~---------------  148 (270)
T 3m66_A           85 SKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE-PVK---------------  148 (270)
T ss_dssp             HTTCCHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-HHH---------------
T ss_pred             HcCCCHHHHHHHHHhCCHHHcCCHHHHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-HHH---------------
Confidence            9999999999999999999999999999999999 58999999999999999999988864 333               


Q ss_pred             HHhhcccccccccccccchhHHHH-HHhCCChHHHHHHhhhccccccccchhhHhHHHHHHH-HcCCChHHHhhcCcccc
Q 012919          312 LLQRCPQSLGCSIEANLKPVTEFF-LERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFL-TMDYDKSELVKFPQYFG  389 (453)
Q Consensus       312 ii~~~P~iL~~s~e~~l~~~~~~L-~~~G~s~eev~~mi~~~P~lL~~sl~~~L~~k~~fL~-~~g~~~~~l~~~P~~L~  389 (453)
                                        ++++++ .++|++.+|+..|+.++|.++++| ++++++|++||. +||++.++|+++|++|+
T Consensus       149 ------------------~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s-~~~l~~k~~fL~~~mg~~~~~i~~~P~~l~  209 (270)
T 3m66_A          149 ------------------ENMKVYRLELGFKHNEIQHMITRIPKMLTAN-KMKLTETFDFVHNVMSIPHHIIVKFPQVFN  209 (270)
T ss_dssp             ------------------HHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC-HHHHHHHHHHHHTTSCCCHHHHHHCGGGGG
T ss_pred             ------------------HHHHHHHHHcCCCHHHHHHHHHhCChhheec-HHHHHHHHHHHHHHhCCCHHHHHhCchHhh
Confidence                              445654 589999999999999999999999 599999999998 89999999999999999


Q ss_pred             ccccccchhhHHHHHHhCcc---------cChhhhhccchHhHHHHHHHHHH
Q 012919          390 YSLEERIKPRYARVKVHGVK---------LLLNQVLSLSGSNFENVLKKKIE  432 (453)
Q Consensus       390 ~Sle~rIkpR~~~L~~lg~~---------~~L~~~L~~sd~~F~~~~~~~~~  432 (453)
                      ||+| ||+|||.+++.+|.+         ++|.+++.+||++|++++++.+.
T Consensus       210 ~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~L~~~l~~sd~~F~~~~~~~~~  260 (270)
T 3m66_A          210 TRLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASV  260 (270)
T ss_dssp             SCHH-HHHHHHHHHHHHTCCCCCTTSSSCCCHHHHHHSCHHHHHHHTTCSCH
T ss_pred             CCHH-HHHHHHHHHHHhhccCCCCCCCCCCCHHHHhcCCHHHHHHHHhcCCH
Confidence            9999 999999999998753         46788999999999999866543

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=1e-35  Score=299.68  Aligned_cols=278  Identities=18%  Similarity=0.321  Sum_probs=243.7

Q ss_pred             CChHHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhCCCCCCCHHHHHhhCCCcccCCcccchHHHHH
Q 012919          150 GDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMT  229 (453)
Q Consensus       150 ~~l~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~I~~ii~~~P~lL~~s~e~~l~~~l~  229 (453)
                      ...+.+++||.++|++.+++   +..+|.++..+++ +.+++++||+++|+++++|++++.++|.+|.+++ +++.|+++
T Consensus        17 ~~~~~~v~~L~s~Gl~~~~~---~~~~p~l~~~s~~-~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~-~~l~p~l~   91 (343)
T 3mva_O           17 LKNEDLLKNLLTMGVDIDMA---RKRQPGVFHRMIT-NEQDLKMFLLSKGASKEVIASIISRYPRAITRTP-ENLSKRWD   91 (343)
T ss_dssp             ---CCHHHHHHHHTCCHHHH---HHHCGGGGGCSCC-CHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCH-HHHHHHHH
T ss_pred             cccHHHHHHHHHcCCCHHHH---HHhCchhhccCcc-cHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCH-HHHHHHHH
Confidence            45678999999999997765   5579999988875 7999999999999999999999999999999996 79999999


Q ss_pred             HHHHhCCChhhHHHHHHhccc-ccccchh-hHHHHHHHHHHcCCChHHHHHHhhhCCceeEechhhcHHHHHHHHhhcCC
Q 012919          230 FLENLGVDKTQWAKVIQRFPA-VLTYSRQ-KVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGV  307 (453)
Q Consensus       230 fL~~lGvs~~~i~~il~~~P~-iL~~s~~-~l~~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~~lG~  307 (453)
                      ||+++|++++++.+++.++|+ +++.+.+ ++.++++||+++|++.++|++++.++|++|+++++ ++++++++|+++|+
T Consensus        92 fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e-~~~~~v~~L~~lgv  170 (343)
T 3mva_O           92 LWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLD-LNKQMVEFLQAAGL  170 (343)
T ss_dssp             HHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHH-HHHHHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHH-HhhHHHHHHHHhCC
Confidence            999999999999999999999 5555554 79999999999999999999999999999999997 55999999998765


Q ss_pred             C---------hhHHHhhcccccccccccccchhHHHHH-HhCCChHHHHHHhhhcc-ccccccchhhHhHHHHHHH----
Q 012919          308 D---------VSVLLQRCPQSLGCSIEANLKPVTEFFL-ERGFTVEEIGTMISRFG-ALYTFSLTENLIPKWEFFL----  372 (453)
Q Consensus       308 ~---------~~~ii~~~P~iL~~s~e~~l~~~~~~L~-~~G~s~eev~~mi~~~P-~lL~~sl~~~L~~k~~fL~----  372 (453)
                      +         +.+++.++|.+++++ +++++++++||+ ++|++.+++..++.+.| .+++++ .+.++++++|+.    
T Consensus       171 ~~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s-~~~l~~~~~~l~e~~~  248 (343)
T 3mva_O          171 SLGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLS-NDYARRSYANIKEKLF  248 (343)
T ss_dssp             HTTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCC-TTHHHHHHHHHHHHHH
T ss_pred             CcCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhcc-HHHHHHHHHHHHHHHH
Confidence            3         356899999999999 789999999999 59999999999998864 789999 589999998887    


Q ss_pred             HcCCChHHH----hhcCccccccccccchhhHHHHHHhCcccC----hhhhhccchHhHHHHHHHHHHhhhccCCC
Q 012919          373 TMDYDKSEL----VKFPQYFGYSLEERIKPRYARVKVHGVKLL----LNQVLSLSGSNFENVLKKKIEKALSDGGH  440 (453)
Q Consensus       373 ~~g~~~~~l----~~~P~~L~~Sle~rIkpR~~~L~~lg~~~~----L~~~L~~sd~~F~~~~~~~~~~~~~~~~~  440 (453)
                      ++|++.+++    .++|++|.+|.| +|+++++|+..+|....    ..++|..|-    ++++.||+.+.+.|+.
T Consensus       249 ~lG~s~~ev~~~v~~~P~il~~s~~-~l~~k~~fl~~mg~~~~~i~~~P~~l~~sl----eri~~R~~~L~~~g~~  319 (343)
T 3mva_O          249 SLGCTEEEVQKFVLSYPDVIFLAEK-KFNDKIDCLMEENISISQIIENPRVLDSSI----STLKSRIKELVNAGCN  319 (343)
T ss_dssp             TTTCCHHHHHHHHHTCGGGGGSCHH-HHHHHHHHHHTTTCCHHHHHHSGGGGGSCH----HHHHHHHHHHHTTTCC
T ss_pred             HcCCCHHHHHHHHHhCCchhcccHH-HHHHHHHHHHHcCCCHHHHHhCCHHHhcCH----HHHHHHHHHHHHCCCC
Confidence            589999886    799999999988 59999999998776532    235677665    4889999999999874

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=100.00  E-value=2e-33  Score=279.98  Aligned_cols=200  Identities=22%  Similarity=0.397  Sum_probs=165.8

Q ss_pred             hHHHHHHHHhCCCCCCCHHHHHhhCCCcccCCcccchHHHHHHHHHhCCChhhHHHHHHhcccccccchhhHHHHHHHHH
Q 012919          188 IKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLY  267 (453)
Q Consensus       188 l~~~v~fL~~lG~~~~~I~~ii~~~P~lL~~s~e~~l~~~l~fL~~lGvs~~~i~~il~~~P~iL~~s~~~l~~~v~fL~  267 (453)
                      ++..+..|.++|+++++|+++++++|.++.    +++.+.+.||..+|++.++|+++|.++|++|+++.++++++++||+
T Consensus        46 ~e~~l~~L~d~Gfs~~~i~~il~~~P~il~----~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~L~~~l~fL~  121 (335)
T 4fp9_B           46 LERVMSSLLDMGFSNAHINELLSVRRGASL----QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQ  121 (335)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHCSSCCH----HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHhCcccch----hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHHHHHHHHHHH
Confidence            566777777888888888888888887753    4567777788778888888888888888888887777888888888


Q ss_pred             HcCCChHHHHHHhhhCCceeEechhhcHHHHHHHHhhcCCChhHHHhhcccccccccccccchhHHHHH-HhCCChHHHH
Q 012919          268 EMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFL-ERGFTVEEIG  346 (453)
Q Consensus       268 ~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~~lG~~~~~ii~~~P~iL~~s~e~~l~~~~~~L~-~~G~s~eev~  346 (453)
                      ++|++.+++++++.+||++|+++.+ ++                                 ..++.+|. ++||+.+++.
T Consensus       122 ~lGl~~~~i~~ll~~~P~lL~~s~e-~i---------------------------------~~~v~~L~~~lGfS~~ev~  167 (335)
T 4fp9_B          122 KLGLGEGKLKRVLYCCPEIFTMRQQ-DI---------------------------------NDTVRLLKEKCLFTVQQVT  167 (335)
T ss_dssp             HTTCTTTTHHHHHHHCGGGGTSCHH-HH---------------------------------HHHHHHHHHTSCCCHHHHH
T ss_pred             HcCCCHHHHHHHHHhCchhhccChH-HH---------------------------------HHHHHHHHHHcCCCHHHHH
Confidence            8888877777777777777777753 33                                 34455664 7899999999


Q ss_pred             HHhhhccccccccchhhHhHHHHHHH-HcCCChHHHhhcCccccccccccchhhHHHHHHhCc-------------ccCh
Q 012919          347 TMISRFGALYTFSLTENLIPKWEFFL-TMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGV-------------KLLL  412 (453)
Q Consensus       347 ~mi~~~P~lL~~sl~~~L~~k~~fL~-~~g~~~~~l~~~P~~L~~Sle~rIkpR~~~L~~lg~-------------~~~L  412 (453)
                      .||.++|.+|++| +++|++|++||. +||++..+|++ |++|+||++ ||+|||.||+.+|.             +++|
T Consensus       168 ~mv~r~P~lL~~S-~e~L~~K~efLv~~Mgl~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~npsL  244 (335)
T 4fp9_B          168 KILHSCPSVLRED-LGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLL  244 (335)
T ss_dssp             HHHHHCGGGGTSC-HHHHHHHHHHHHTTTCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCCH
T ss_pred             HHHHhCChhhhCC-HHHHHHHHHHHHHHhCCCHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCccH
Confidence            9999999999999 689999999999 89999999998 999999998 99999999999986             2458


Q ss_pred             hhhhccchHhHHHHHH
Q 012919          413 NQVLSLSGSNFENVLK  428 (453)
Q Consensus       413 ~~~L~~sd~~F~~~~~  428 (453)
                      .+++.+||++||.+++
T Consensus       245 ~~il~~sd~~F~~~vA  260 (335)
T 4fp9_B          245 KDILRVSEAEFLARTA  260 (335)
T ss_dssp             HHHTTSCHHHHHHHTS
T ss_pred             HHHHcCCHHHHHHHHH
Confidence            9999999999998863

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=99.97  E-value=2.7e-31  Score=258.82  Aligned_cols=193  Identities=21%  Similarity=0.367  Sum_probs=177.4

Q ss_pred             cccccCCCCCChHHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhCCCCCCCHHHHHhhCCCcccCCc
Q 012919          141 SRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISL  220 (453)
Q Consensus       141 ~r~l~~~~~~~l~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~I~~ii~~~P~lL~~s~  220 (453)
                      +.++.++.++++.++++||.++|++.++|++++.++|.++++++++ ++|+++||+++|++.++|++++.++|++|++++
T Consensus        30 p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~~~Gls~~~i~~~l~~~P~lL~~s~  108 (270)
T 3m66_A           30 NLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSV  108 (270)
T ss_dssp             HHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHHHTTCCHHHHHHHHHHSTTGGGSCH
T ss_pred             hhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHHHcCCCHHHHHHHHHhCCHHHcCCH
Confidence            3446777888999999999999999999999999999999999986 999999999999999999999999999999999


Q ss_pred             ccchHHHHHHH-HHhCCChhhHHHHHHhcccccccchhhHHHHHHHH-HHcCCChHHHHHHhhhCCceeEechhhcHHHH
Q 012919          221 SENLIPTMTFL-ENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFL-YEMGLSAESIGKVLTRCPNIISYSIEEKLRPT  298 (453)
Q Consensus       221 e~~l~~~l~fL-~~lGvs~~~i~~il~~~P~iL~~s~~~l~~~v~fL-~~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~  298 (453)
                      + +++++++|| +++|++.+++.+++.++|++++++.++++++++++ +++|++.++|.+++.++|+++++|. ++++++
T Consensus       109 ~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~-~~l~~k  186 (270)
T 3m66_A          109 E-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANK-MKLTET  186 (270)
T ss_dssp             H-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCH-HHHHHH
T ss_pred             H-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecH-HHHHHH
Confidence            5 799999999 58999999999999999999999999999999976 6999999999999999999999997 699999


Q ss_pred             HHHHh-hcCCChhHHHhhcccccccccccccchhHHHHHHh
Q 012919          299 AEYFR-SLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLER  338 (453)
Q Consensus       299 v~~L~-~lG~~~~~ii~~~P~iL~~s~e~~l~~~~~~L~~~  338 (453)
                      ++||. ++|++...+ .++|.+|++|++ +++||+.|++.+
T Consensus       187 ~~fL~~~mg~~~~~i-~~~P~~l~~Sle-ri~pR~~~l~~L  225 (270)
T 3m66_A          187 FDFVHNVMSIPHHII-VKFPQVFNTRLF-KVKERHLFLTYL  225 (270)
T ss_dssp             HHHHHTTSCCCHHHH-HHCGGGGGSCHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHH-HhCchHhhCCHH-HHHHHHHHHHHh
Confidence            99995 589987764 578999999987 888888887754

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=99.94  E-value=5.5e-27  Score=233.55  Aligned_cols=181  Identities=18%  Similarity=0.364  Sum_probs=168.3

Q ss_pred             ChHHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhCCCCCCCHHHHHhhCCCcccCCcccchHHHHHH
Q 012919          151 DLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTF  230 (453)
Q Consensus       151 ~l~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~I~~ii~~~P~lL~~s~e~~l~~~l~f  230 (453)
                      .+..++..|.++|+++++|++++..+|.++.    .++.+++.+|..+|++.++|+++|.++|++|++++ ++++++++|
T Consensus        45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~----~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~-e~L~~~l~f  119 (335)
T 4fp9_B           45 ELERVMSSLLDMGFSNAHINELLSVRRGASL----QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPI-MQMRKRSSY  119 (335)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCH----HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCH-HHHHHHHHH
T ss_pred             cHHHHHHHHHHCCCCHHHHHHHHHhCcccch----hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCH-HHHHHHHHH
Confidence            4678889999999999999999999999864    35789999999999999999999999999999998 689999999


Q ss_pred             HHHhCCChhhHHHHHHhcccccccchhhHHHHHHHHH-HcCCChHHHHHHhhhCCceeEechhhcHHHHHHHHh-hcCCC
Q 012919          231 LENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLY-EMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFR-SLGVD  308 (453)
Q Consensus       231 L~~lGvs~~~i~~il~~~P~iL~~s~~~l~~~v~fL~-~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~-~lG~~  308 (453)
                      |+++|++.+++.+++.++|++|+++.+++..++.+|+ ++|++.++|.+|+.+||++|++|. ++|+++++||. .||++
T Consensus       120 L~~lGl~~~~i~~ll~~~P~lL~~s~e~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~-e~L~~K~efLv~~Mgl~  198 (335)
T 4fp9_B          120 LQKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIK  198 (335)
T ss_dssp             HHHTTCTTTTHHHHHHHCGGGGTSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCH-HHHHHHHHHHHTTTCCC
T ss_pred             HHHcCCCHHHHHHHHHhCchhhccChHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCH-HHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999996 899999999999999999999996 58999999997 59999


Q ss_pred             hhHHHhhcccccccccccccchhHHHHHHhCC
Q 012919          309 VSVLLQRCPQSLGCSIEANLKPVTEFFLERGF  340 (453)
Q Consensus       309 ~~~ii~~~P~iL~~s~e~~l~~~~~~L~~~G~  340 (453)
                      +..|+.  |++|++|++ +|++|+.||..+|.
T Consensus       199 ~~eIvk--P~~l~ySLe-RIkpRH~fL~~lG~  227 (335)
T 4fp9_B          199 HPDIVK--SEYLQYSLT-KIKQRHIYLERLGR  227 (335)
T ss_dssp             HHHHHH--TTGGGSCHH-HHHHHHHHHHHHTS
T ss_pred             HHHccc--cchhhccHH-HHHHHHHHHHHcCC
Confidence            888763  899999986 89999999998887

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=99.30  E-value=3.2e-11  Score=103.30  Aligned_cols=159  Identities=23%  Similarity=0.429  Sum_probs=125.8

Q ss_pred             HHHHHHcCCChHHHHHHhhhCCceeEechhhcHHHHHHHHhhcCCCh---hHHHhhcccccccccccccchhHHHHH-Hh
Q 012919          263 VDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDV---SVLLQRCPQSLGCSIEANLKPVTEFFL-ER  338 (453)
Q Consensus       263 v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~~lG~~~---~~ii~~~P~iL~~s~e~~l~~~~~~L~-~~  338 (453)
                      +.-+--+|+.++-++-++.+.|+++...+. .++.+-.||+++|+..   .+++..||.+++..- ..+.+.+..|+ .+
T Consensus        37 isefillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrq-qdindtvrllkekc  114 (239)
T 4fzv_B           37 ISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQ-QDINDTVRLLKEKC  114 (239)
T ss_dssp             HHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCH-HHHHHHHHHHHHHS
T ss_pred             HHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHH-hhHhHHHHHHHHhH
Confidence            333444677777777777777777776664 5666677777766653   356667777777763 45666777777 47


Q ss_pred             CCChHHHHHHhhhccccccccchhhHhHHHHHHH-HcCCChHHHhhcCccccccccccchhhHHHHHHhCc---------
Q 012919          339 GFTVEEIGTMISRFGALYTFSLTENLIPKWEFFL-TMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGV---------  408 (453)
Q Consensus       339 G~s~eev~~mi~~~P~lL~~sl~~~L~~k~~fL~-~~g~~~~~l~~~P~~L~~Sle~rIkpR~~~L~~lg~---------  408 (453)
                      =|+.+++.+++..+|.++.-++ ..+.-|++|-. .||....+|++ ..||.||+. +|+.|+-+++.+|.         
T Consensus       115 lftvqqvtkilhscpsvlredl-gqleykfqyayfrmgikhpdivk-seylqyslt-kikqrhiylerlgryqtpdkkgq  191 (239)
T 4fzv_B          115 LFTVQQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQ  191 (239)
T ss_dssp             CCCHHHHHHHHHHCGGGGTSCT-THHHHHHHHHHHTSCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSC
T ss_pred             HhhHHHHHHHHHhCcHHHHHHH-hhhhhhHhHHHHHccCCCcchhH-HHHHHHHHH-HHHHHHhHHHHhcccCCCCccCC
Confidence            8999999999999999999996 89999999987 99999999997 478999996 89999999999985         


Q ss_pred             ----ccChhhhhccchHhHHHH
Q 012919          409 ----KLLLNQVLSLSGSNFENV  426 (453)
Q Consensus       409 ----~~~L~~~L~~sd~~F~~~  426 (453)
                          +..+.++|..|+.+|..+
T Consensus       192 tqipnpllkdilrvseaeflar  213 (239)
T 4fzv_B          192 TQIPNPLLKDILRVSEAEFLAR  213 (239)
T ss_dssp             CSSCCCCHHHHHTSCHHHHHHH
T ss_pred             ccCCChHHHHHHHHhHHHHHHH
Confidence                345889999999999876

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=98.89  E-value=1.2e-08  Score=87.44  Aligned_cols=148  Identities=19%  Similarity=0.400  Sum_probs=122.7

Q ss_pred             hHHHHHHHHhCCCCCCCHHHHHhhCCCcccCCcccchHHHHHHHHHhCCChhhHHHHHHhcccccccchhhHHHHHHHHH
Q 012919          188 IKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLY  267 (453)
Q Consensus       188 l~~~v~fL~~lG~~~~~I~~ii~~~P~lL~~s~e~~l~~~l~fL~~lGvs~~~i~~il~~~P~iL~~s~~~l~~~v~fL~  267 (453)
                      +-..+.-+.-+|++++-++-++.+.|++|...+ -.++.+-.||+.+|+....+.+++..+|.||++..+++...+..|+
T Consensus        33 lldiisefillglnpepvcvvlkkspqllklpi-mqmrkrssylqklglgegklkrvlyccpeiftmrqqdindtvrllk  111 (239)
T 4fzv_B           33 LLDIISEFILLGLNPEPVCVVLKKSPQLLKLPI-MQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLLK  111 (239)
T ss_dssp             TTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCH-HHHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCceEEEecCCHHHhcChH-HHHHHHHHHHHHhCCCccchhhheecCcHHHHHHHhhHhHHHHHHH
Confidence            444556666689999999999999999998887 6888999999999999999999999999999999999999999998


Q ss_pred             -HcCCChHHHHHHhhhCCceeEechhhcHHHHHHHHh-hcCCChhHHHhhcccccccccccccchhHHHHHHhCC
Q 012919          268 -EMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFR-SLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGF  340 (453)
Q Consensus       268 -~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~-~lG~~~~~ii~~~P~iL~~s~e~~l~~~~~~L~~~G~  340 (453)
                       .+-++..++.+++..||.++.-+.. .++-+++|.- .||+....++..  ..+.+|+ .+++.+.-||.++|.
T Consensus       112 ekclftvqqvtkilhscpsvlredlg-qleykfqyayfrmgikhpdivks--eylqysl-tkikqrhiylerlgr  182 (239)
T 4fzv_B          112 EKCLFTVQQVTKILHSCPSVLREDLG-QLEYKFQYAYFRMGIKHPDIVKS--EYLQYSL-TKIKQRHIYLERLGR  182 (239)
T ss_dssp             HHSCCCHHHHHHHHHHCGGGGTSCTT-HHHHHHHHHHHTSCCCHHHHHHT--TGGGSCH-HHHHHHHHHHHHHTC
T ss_pred             HhHHhhHHHHHHHHHhCcHHHHHHHh-hhhhhHhHHHHHccCCCcchhHH--HHHHHHH-HHHHHHHhHHHHhcc
Confidence             5889999999999999999988874 7888877764 688765555432  3456665 567777777777765

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=91.20  E-value=0.32  Score=48.43  Aligned_cols=45  Identities=22%  Similarity=0.410  Sum_probs=35.3

Q ss_pred             CCChHHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhCCCCC
Q 012919          149 SGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPK  202 (453)
Q Consensus       149 ~~~l~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~lG~~~  202 (453)
                      .......|+.|.++||++.++.+.++..-        ++.+.-++||.+ |++.
T Consensus       165 g~~~~~~i~~l~~MGf~~~~~~~AL~a~~--------nn~~~A~e~L~~-gip~  209 (368)
T 1oqy_A          165 GSEYETMLTEIMSMGYERERVVAALRASY--------NNPHRAVEYLLT-GIPG  209 (368)
T ss_dssp             TTTHHHHHHHHHTTTCCSHHHHHHHHHSC--------SSTTHHHHTTTT-SSTT
T ss_pred             CcchHHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHh-CCCc
Confidence            34678899999999999999999987752        356678899864 5554

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=90.89  E-value=5.3  Score=32.90  Aligned_cols=101  Identities=18%  Similarity=0.241  Sum_probs=55.9

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhCCCCCCCHHHHHhhCCCcccCCcccchHHHHHHHH
Q 012919          153 RPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLE  232 (453)
Q Consensus       153 ~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~I~~ii~~~P~lL~~s~e~~l~~~l~fL~  232 (453)
                      +..++.|.+.||+...+.+.+..+-        ++.+..++||....                              -|.
T Consensus         9 ~~~v~~l~~MGFp~~~~~kAl~~~g--------~~~e~amewL~~h~------------------------------~L~   50 (118)
T 4ae4_A            9 RQCVETVVNMGYSYECVLRAMKAAG--------ANIEQILDYLFAHG------------------------------QLC   50 (118)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHC--------SCHHHHHHHHHHHH------------------------------HHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHC--------cCHHHHHHHHHHhc------------------------------hhc
Confidence            3456777778888888877776651        24666777775320                              011


Q ss_pred             HhCCChhhHHHHHHhcccccccch---hhHHHHHHHHHHcCCChHHHHHHhhhCCceeEechhhcHHHHHHHHh
Q 012919          233 NLGVDKTQWAKVIQRFPAVLTYSR---QKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFR  303 (453)
Q Consensus       233 ~lGvs~~~i~~il~~~P~iL~~s~---~~l~~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~  303 (453)
                      +-|++..++-..+..+.    .+.   ......+.-|.++||+.+.+.+.+..+        ..++..-++||.
T Consensus        51 d~~~d~~~~e~~l~~~~----~~~~~~~~~~~~v~~L~eMGF~~~~a~~AL~~~--------~nd~erAlewL~  112 (118)
T 4ae4_A           51 EKGFDPLLVEEALEMHQ----CSEEKMMEFLQLMSKFKEMGFELKDIKEVLLLH--------NNDQDNALEDLM  112 (118)
T ss_dssp             HTTCCHHHHHHHHHHCS----SCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHT--------TTCHHHHHHHHH
T ss_pred             ccCCChhhhHHHHHhcc----CCccccccCHHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHH
Confidence            22333333333332211    011   012345677778888888887777664        246666777764

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00