Citrus Sinensis ID: 012927

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450---
MVLSSADKNHETPLLPAQDPEPFIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
cccccccccccccccccccccccccccccHHHHHHHHHHHHccHHHcHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHEEEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHcccccccccccccccccEEHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
cccccccccccHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccEEEEEHHHHHHHHHHHEEEHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcHHHHHHEHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
mvlssadknhetpllpaqdpepfikrtGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLcdchrgpdpeygpgrnrsyLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILsqapdfhniQSLSVIAAVMSFAYSFIGFGLGVAKVIGngfvmgsfsgvstTTSIEKMWLVAQALGDIAFAYPYSLILIEIQdtlkspppanqtmkkastmSIITTTIFYLFCggfgyaafgdntpgnlltgfgfyepywlidLANAFIVIHLVGgyqvysqpiFAHFEKWIcekfpengflnnefflkpplmpafrwnplrlcfRTVYVVSVTAIAMSFPYFNQVLGVIggvifwpltiyfpVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
mvlssadknhetpllpaqdpepFIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
MVLSSADKNHETPLLPAQDPEPFIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
**********************FIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDT****************MSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII*****
************************KRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLK******QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKL*
***********TPLLPAQDPEPFIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
*****************QDPEPFIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISA***
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MVLSSADKNHETPLLPAQDPEPFIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query453 2.2.26 [Sep-21-2011]
Q9FF99467 Probable amino acid perme yes no 0.995 0.965 0.541 1e-136
Q38967493 Amino acid permease 2 OS= no no 0.982 0.902 0.501 1e-132
Q39134476 Amino acid permease 3 OS= no no 0.942 0.897 0.505 1e-124
Q8GUM3480 Amino acid permease 5 OS= no no 0.964 0.910 0.501 1e-124
O80592475 Amino acid permease 8 OS= no no 0.949 0.905 0.502 1e-123
Q9FN04466 Amino acid permease 4 OS= no no 0.960 0.933 0.483 1e-122
Q42400485 Amino acid permease 1 OS= no no 0.951 0.888 0.483 1e-121
P92934481 Amino acid permease 6 OS= no no 0.951 0.896 0.489 1e-116
Q9FKS8446 Lysine histidine transpor no no 0.891 0.905 0.287 4e-41
Q9C733453 Lysine histidine transpor no no 0.849 0.849 0.293 7e-39
>sp|Q9FF99|AAP7_ARATH Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=1 SV=1 Back     alignment and function desciption
 Score =  486 bits (1250), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 252/465 (54%), Positives = 323/465 (69%), Gaps = 14/465 (3%)

Query: 1   MVLSSADKNHETPLLPAQDPEPFIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIA 60
           M +   D++        Q  +    RTGTLWTAVAHIITGVIG+GVLSLAW+ A+LGWIA
Sbjct: 1   MDIKEDDESRVITPTELQLHDSVTARTGTLWTAVAHIITGVIGAGVLSLAWATAELGWIA 60

Query: 61  GPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHV 120
           GP A++ FA VTL + FLL DC+R PDP  GP R  SY +AV + LGK N   C   V++
Sbjct: 61  GPAALIAFAGVTLLSAFLLSDCYRFPDPNNGPLRLNSYSQAVKLYLGKKNEIVCGVVVYI 120

Query: 121 GLYGTAIAYTVTSAIS----------MREGHEAACEYSDT--YYMLIFGAVQLILSQAPD 168
            L+G  IAYT+  A             R GH A C Y D   Y+M++FG  Q+ +SQ P+
Sbjct: 121 SLFGCGIAYTIVIATCSRAIMKSNCYHRNGHNATCSYGDNNNYFMVLFGLTQIFMSQIPN 180

Query: 169 FHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALG 228
           FHN+  LS++AA+MSF YSFIG GL + K+I N  + GS  G+      EK+W+V QALG
Sbjct: 181 FHNMVWLSLVAAIMSFTYSFIGIGLALGKIIENRKIEGSIRGIPAENRGEKVWIVFQALG 240

Query: 229 DIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTP 288
           +IAF+YP+S+IL+EIQDTL+SPP   QTMKKAST+++   T F+  CG FGYAAFGD+TP
Sbjct: 241 NIAFSYPFSIILLEIQDTLRSPPAEKQTMKKASTVAVFIQTFFFFCCGCFGYAAFGDSTP 300

Query: 289 GNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEF 348
           GNLLTGFGFYEP+WL+D ANA IV+HLVGGYQVYSQPIFA  E+ + +K+PEN F+   +
Sbjct: 301 GNLLTGFGFYEPFWLVDFANACIVLHLVGGYQVYSQPIFAAAERSLTKKYPENKFIARFY 360

Query: 349 FLKPPLM--PAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPV 406
             K PL+     R NP+R+C RT+YV+  T +A+ FPYFN+VLGV+G + FWPL +YFPV
Sbjct: 361 GFKLPLLRGETVRLNPMRMCLRTMYVLITTGVAVMFPYFNEVLGVVGALAFWPLAVYFPV 420

Query: 407 EMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAK 451
           EM   Q  I +WTR W++LR FS+VC +V    LVGSI G++ AK
Sbjct: 421 EMCILQKKIRSWTRPWLLLRGFSFVCLLVCLLSLVGSIYGLVGAK 465
Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q38967|AAP2_ARATH Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1 Back     alignment and function description
>sp|Q39134|AAP3_ARATH Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2 Back     alignment and function description
>sp|Q8GUM3|AAP5_ARATH Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1 Back     alignment and function description
>sp|O80592|AAP8_ARATH Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1 Back     alignment and function description
>sp|Q9FN04|AAP4_ARATH Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1 Back     alignment and function description
>sp|Q42400|AAP1_ARATH Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1 Back     alignment and function description
>sp|P92934|AAP6_ARATH Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1 Back     alignment and function description
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9C733|LHTL1_ARATH Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query453
255586130461 amino acid transporter, putative [Ricinu 0.980 0.963 0.691 0.0
225462048472 PREDICTED: probable amino acid permease 0.982 0.942 0.663 0.0
224146569431 amino acid permease [Populus trichocarpa 0.929 0.976 0.670 1e-173
224122284458 amino acid permease [Populus trichocarpa 0.955 0.945 0.644 1e-166
359494348 623 PREDICTED: probable amino acid permease 0.955 0.695 0.616 1e-162
296089993458 unnamed protein product [Vitis vinifera] 0.955 0.945 0.616 1e-162
356569591447 PREDICTED: probable amino acid permease 0.949 0.961 0.636 1e-161
224122276471 amino acid permease [Populus trichocarpa 0.982 0.944 0.626 1e-161
357495243467 Amino acid permease [Medicago truncatula 0.980 0.950 0.608 1e-161
255586132456 amino acid transporter, putative [Ricinu 0.951 0.945 0.626 1e-159
>gi|255586130|ref|XP_002533727.1| amino acid transporter, putative [Ricinus communis] gi|223526365|gb|EEF28658.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/454 (69%), Positives = 373/454 (82%), Gaps = 10/454 (2%)

Query: 10  HETPLLPAQDPEPFIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFA 69
            ETPLL  Q  E  ++RTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPL M+ FA
Sbjct: 8   QETPLLQKQAAETALERTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLTMMCFA 67

Query: 70  SVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAY 129
            VTL +T+LLCDC+R P PE GP RNRSYL+AVD+ LGK  +W C  FV + LYGT IAY
Sbjct: 68  LVTLLSTYLLCDCYRFPHPELGPSRNRSYLQAVDVSLGKKASWICGIFVELSLYGTGIAY 127

Query: 130 TVTSAISMR----------EGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIA 179
           T+TSAISMR          EGH AACE+SDT YMLIFGA Q+I+SQ PDFHN++ LS++A
Sbjct: 128 TITSAISMRAIRKSNCYHKEGHSAACEFSDTSYMLIFGAFQIIVSQIPDFHNMEWLSILA 187

Query: 180 AVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLI 239
           AVMSF YS IGFGLG+A+VI NG+ MGS +GVS +++ +K+W ++QALGDIAFAYPYSLI
Sbjct: 188 AVMSFTYSSIGFGLGLAQVIENGYAMGSITGVSASSAADKVWNISQALGDIAFAYPYSLI 247

Query: 240 LIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYE 299
           L+EIQDTLKSPP  N+TM+KAST++++ TT FYL CG FGYAAFG++TPGNLLTGFGFYE
Sbjct: 248 LLEIQDTLKSPPTENETMRKASTIALVVTTFFYLCCGAFGYAAFGEDTPGNLLTGFGFYE 307

Query: 300 PYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFR 359
           PYWLID ANA IV+HLVGGYQVYSQP+FA  EKW  E+ P + F+NN + LK PL+PAF 
Sbjct: 308 PYWLIDFANACIVLHLVGGYQVYSQPVFATIEKWFAERHPASRFINNNYSLKLPLLPAFG 367

Query: 360 WNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWT 419
            N  R+CFRT+YVVS TAI+M FPYFNQV+G++G + FWPLTIYFPVEMYF+Q NIEAWT
Sbjct: 368 LNAFRICFRTLYVVSTTAISMIFPYFNQVIGLLGALNFWPLTIYFPVEMYFRQRNIEAWT 427

Query: 420 RKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS 453
            KW+MLR FS V F+V+   LVGS++G+ISAKLS
Sbjct: 428 IKWIMLRAFSIVVFLVAAIALVGSVEGVISAKLS 461

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225462048|ref|XP_002268936.1| PREDICTED: probable amino acid permease 7 [Vitis vinifera] gi|296089992|emb|CBI39811.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224146569|ref|XP_002336318.1| amino acid permease [Populus trichocarpa] gi|222834652|gb|EEE73115.1| amino acid permease [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122284|ref|XP_002330585.1| amino acid permease [Populus trichocarpa] gi|222872143|gb|EEF09274.1| amino acid permease [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359494348|ref|XP_002268981.2| PREDICTED: probable amino acid permease 7-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296089993|emb|CBI39812.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356569591|ref|XP_003552982.1| PREDICTED: probable amino acid permease 7-like [Glycine max] Back     alignment and taxonomy information
>gi|224122276|ref|XP_002330583.1| amino acid permease [Populus trichocarpa] gi|222872141|gb|EEF09272.1| amino acid permease [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357495243|ref|XP_003617910.1| Amino acid permease [Medicago truncatula] gi|355519245|gb|AET00869.1| Amino acid permease [Medicago truncatula] Back     alignment and taxonomy information
>gi|255586132|ref|XP_002533728.1| amino acid transporter, putative [Ricinus communis] gi|223526366|gb|EEF28659.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query453
TAIR|locus:2172868467 AAP7 "amino acid permease 7" [ 0.940 0.912 0.565 3.2e-136
TAIR|locus:2184707493 AAP2 "amino acid permease 2" [ 0.960 0.882 0.507 1.7e-123
TAIR|locus:2031402476 AAP3 "amino acid permease 3" [ 0.933 0.888 0.518 2.9e-119
TAIR|locus:2163981466 AAP4 "amino acid permease 4" [ 0.960 0.933 0.487 1.2e-115
TAIR|locus:2201871475 AAP8 "amino acid permease 8" [ 0.935 0.892 0.506 2.4e-115
TAIR|locus:2168912481 AAP6 "amino acid permease 6" [ 0.938 0.883 0.494 3.5e-114
TAIR|locus:2016600485 AAP1 "amino acid permease 1" [ 0.938 0.876 0.487 1.1e-112
TAIR|locus:2205876480 AAP5 "amino acid permease 5" [ 0.706 0.666 0.516 1.1e-85
UNIPROTKB|Q85V22441 ht "Histidine amino acid trans 0.668 0.687 0.340 2.3e-52
TAIR|locus:2008605441 AT1G67640 "AT1G67640" [Arabido 0.706 0.725 0.312 1.4e-48
TAIR|locus:2172868 AAP7 "amino acid permease 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1334 (474.7 bits), Expect = 3.2e-136, P = 3.2e-136
 Identities = 249/440 (56%), Positives = 316/440 (71%)

Query:    26 RTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRG 85
             RTGTLWTAVAHIITGVIG+GVLSLAW+ A+LGWIAGP A++ FA VTL + FLL DC+R 
Sbjct:    26 RTGTLWTAVAHIITGVIGAGVLSLAWATAELGWIAGPAALIAFAGVTLLSAFLLSDCYRF 85

Query:    86 PDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMR------- 138
             PDP  GP R  SY +AV + LGK N   C   V++ L+G  IAYT+  A   R       
Sbjct:    86 PDPNNGPLRLNSYSQAVKLYLGKKNEIVCGVVVYISLFGCGIAYTIVIATCSRAIMKSNC 145

Query:   139 ---EGHEAACEYSDT--YYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGL 193
                 GH A C Y D   Y+M++FG  Q+ +SQ P+FHN+  LS++AA+MSF YSFIG GL
Sbjct:   146 YHRNGHNATCSYGDNNNYFMVLFGLTQIFMSQIPNFHNMVWLSLVAAIMSFTYSFIGIGL 205

Query:   194 GVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPA 253
              + K+I N  + GS  G+      EK+W+V QALG+IAF+YP+S+IL+EIQDTL+SPP  
Sbjct:   206 ALGKIIENRKIEGSIRGIPAENRGEKVWIVFQALGNIAFSYPFSIILLEIQDTLRSPPAE 265

Query:   254 NQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVI 313
              QTMKKAST+++   T F+  CG FGYAAFGD+TPGNLLTGFGFYEP+WL+D ANA IV+
Sbjct:   266 KQTMKKASTVAVFIQTFFFFCCGCFGYAAFGDSTPGNLLTGFGFYEPFWLVDFANACIVL 325

Query:   314 HLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLM--PAFRWNPLRLCFRTVY 371
             HLVGGYQVYSQPIFA  E+ + +K+PEN F+   +  K PL+     R NP+R+C RT+Y
Sbjct:   326 HLVGGYQVYSQPIFAAAERSLTKKYPENKFIARFYGFKLPLLRGETVRLNPMRMCLRTMY 385

Query:   372 VVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYV 431
             V+  T +A+ FPYFN+VLGV+G + FWPL +YFPVEM   Q  I +WTR W++LR FS+V
Sbjct:   386 VLITTGVAVMFPYFNEVLGVVGALAFWPLAVYFPVEMCILQKKIRSWTRPWLLLRGFSFV 445

Query:   432 CFIVSTFGLVGSIQGIISAK 451
             C +V    LVGSI G++ AK
Sbjct:   446 CLLVCLLSLVGSIYGLVGAK 465
GO:0005886 "plasma membrane" evidence=ISM
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IDA
GO:0006865 "amino acid transport" evidence=ISS
GO:0016020 "membrane" evidence=ISS
TAIR|locus:2184707 AAP2 "amino acid permease 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031402 AAP3 "amino acid permease 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163981 AAP4 "amino acid permease 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201871 AAP8 "amino acid permease 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168912 AAP6 "amino acid permease 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016600 AAP1 "amino acid permease 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205876 AAP5 "amino acid permease 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FF99AAP7_ARATHNo assigned EC number0.54190.99550.9657yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query453
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 2e-88
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 2e-11
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  275 bits (705), Expect = 2e-88
 Identities = 115/432 (26%), Positives = 193/432 (44%), Gaps = 34/432 (7%)

Query: 26  RTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRG 85
            T + W AV ++I  +IG+GVLSL ++  QLGWI G + +VI   ++L+   LL  C + 
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 86  PDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMR---EGHE 142
            D   G  R +SY +      G        F + V L+G  I+Y + +  ++    +   
Sbjct: 61  VDKVKGK-RRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFF 119

Query: 143 AACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNG 202
             C  S  Y+++IFG + + LS  P+   +  LS++AAV S           +  ++ + 
Sbjct: 120 DTCHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLY---------IVILVLSV 170

Query: 203 FVMGSFSGVS----TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMK 258
             +G  +          +  K+  +  A+G I FA+    +L+ IQ+T+KS P   + M 
Sbjct: 171 AELGVLTAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKS-PSKFKAMT 229

Query: 259 KASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGG 318
           K    +II  T+ Y+  G  GY AFG+N  GN+L         WLID+AN  +V+HL+  
Sbjct: 230 KVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPK--SDWLIDIANLLLVLHLLLS 287

Query: 319 YQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAI 378
           Y + + PI    E  +  K       +N                LR+  R+  VV    I
Sbjct: 288 YPLQAFPIRQIVENLLFRKG--ASGKHNPKSKL-----------LRVVIRSGLVVITYLI 334

Query: 379 AMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRV-FSYVCFIVST 437
           A+S P+    L ++G     PLT   P   + K    +  + + +        +C ++  
Sbjct: 335 AISVPFLGDFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGL 394

Query: 438 FGLVGSIQGIIS 449
             +   + G+I 
Sbjct: 395 LLMAYGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 453
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
PLN03074473 auxin influx permease; Provisional 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PRK10483414 tryptophan permease; Provisional 99.94
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.94
PRK09664415 tryptophan permease TnaB; Provisional 99.94
PRK15132403 tyrosine transporter TyrP; Provisional 99.93
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.91
PRK13629443 threonine/serine transporter TdcC; Provisional 99.9
TIGR00814397 stp serine transporter. The HAAAP family includes 99.85
PRK10655438 potE putrescine transporter; Provisional 99.64
PRK10644445 arginine:agmatin antiporter; Provisional 99.6
PRK15049499 L-asparagine permease; Provisional 99.59
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.58
PRK10249458 phenylalanine transporter; Provisional 99.57
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.55
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.55
PRK10238456 aromatic amino acid transporter; Provisional 99.53
PRK10746461 putative transport protein YifK; Provisional 99.52
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.52
PRK11387471 S-methylmethionine transporter; Provisional 99.51
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.51
PRK11021410 putative transporter; Provisional 99.49
TIGR00906557 2A0303 cationic amino acid transport permease. 99.48
PRK10580457 proY putative proline-specific permease; Provision 99.47
TIGR00909429 2A0306 amino acid transporter. 99.46
PRK10836489 lysine transporter; Provisional 99.45
TIGR00911501 2A0308 L-type amino acid transporter. 99.45
TIGR00913478 2A0310 amino acid permease (yeast). 99.44
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.41
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.4
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.39
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.37
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.36
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.35
TIGR00930 953 2a30 K-Cl cotransporter. 99.34
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.2
COG0531466 PotE Amino acid transporters [Amino acid transport 99.2
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.13
TIGR00907482 2A0304 amino acid permease (GABA permease). 99.06
PRK15238496 inner membrane transporter YjeM; Provisional 99.04
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 99.04
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 99.02
PF03845320 Spore_permease: Spore germination protein; InterPr 98.91
KOG3832319 consensus Predicted amino acid transporter [Genera 98.86
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 98.82
COG0833541 LysP Amino acid transporters [Amino acid transport 98.77
KOG1286554 consensus Amino acid transporters [Amino acid tran 98.45
KOG1289550 consensus Amino acid transporters [Amino acid tran 98.35
COG3949349 Uncharacterized membrane protein [Function unknown 98.33
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.31
PRK11375484 allantoin permease; Provisional 98.18
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.15
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.06
COG1457442 CodB Purine-cytosine permease and related proteins 98.04
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 97.93
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 97.93
TIGR00813407 sss transporter, SSS family. have different number 97.9
COG0591493 PutP Na+/proline symporter [Amino acid transport a 97.84
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 97.82
PRK12488549 acetate permease; Provisional 97.66
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 97.59
PRK11017404 codB cytosine permease; Provisional 97.56
PRK00701439 manganese transport protein MntH; Reviewed 97.2
TIGR00835425 agcS amino acid carrier protein. Members of the AG 97.2
PRK15015 701 carbon starvation protein A; Provisional 97.11
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 96.96
PRK09395551 actP acetate permease; Provisional 96.95
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 96.94
COG1966 575 CstA Carbon starvation protein, predicted membrane 96.79
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 96.78
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 96.64
PRK10484523 putative transporter; Provisional 96.31
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 96.11
PF01566358 Nramp: Natural resistance-associated macrophage pr 96.01
PRK15419502 proline:sodium symporter PutP; Provisional 95.62
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 95.35
COG4147529 DhlC Predicted symporter [General function predict 94.58
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 94.29
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 93.95
PRK15433439 branched-chain amino acid transport system 2 carri 93.8
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 93.22
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 92.71
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 92.06
KOG1288 945 consensus Amino acid transporters [Amino acid tran 91.64
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 91.11
COG0814415 SdaC Amino acid permeases [Amino acid transport an 86.76
PRK15433439 branched-chain amino acid transport system 2 carri 85.31
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 84.34
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 83.29
PHA02764399 hypothetical protein; Provisional 81.53
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=6.4e-59  Score=446.30  Aligned_cols=388  Identities=21%  Similarity=0.318  Sum_probs=339.7

Q ss_pred             cccchHHHHHHHHHhhhhchhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHH
Q 012927           25 KRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM  104 (453)
Q Consensus        25 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~  104 (453)
                      ++..|..++..|+.|+++|+|+|++|+||+++|++.|.+..+++++++.|+++.+++|.++...+.+. ...+|+|.++.
T Consensus        44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~-~~~~y~~~~~~  122 (449)
T KOG1304|consen   44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRG-PSLDYAETAES  122 (449)
T ss_pred             CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-ccccHHHHHHH
Confidence            34578899999999999999999999999999999999999999999999999999998765444333 55788888875


Q ss_pred             H----------hccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccc--cccccccchhHHHHHHHHHHhhcCCCCCch
Q 012927          105 C----------LGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHE--AACEYSDTYYMLIFGAVQLILSQAPDFHNI  172 (453)
Q Consensus       105 ~----------~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~--~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l  172 (453)
                      +          +|+++|.++++.+.++++|.|++|++++++++++..+  .....+.+.|+.+..+++++++++||+|.|
T Consensus       123 a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~lll~~Ir~Lk~L  202 (449)
T KOG1304|consen  123 AMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLLLLNLIRNLKIL  202 (449)
T ss_pred             HHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            4          4788899999999999999999999999999999876  234677889999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCC
Q 012927          173 QSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPP  252 (453)
Q Consensus       173 ~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~  252 (453)
                      ..+|.++.++.++    .+++..++..++.+.      .++.....++.+++..+|+.+|||+++..+.|+.++||+|  
T Consensus       203 sp~Sl~Anv~~~~----g~~ii~~y~~~~~~~------~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P--  270 (449)
T KOG1304|consen  203 SPFSLFANVFILV----GLAIIMYYLVQDLPP------TSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKP--  270 (449)
T ss_pred             hHHHHHHHHHHHH----HHHHHHHHHHhccCC------ccccccccchhhhHHHHHHHHHHhccceEEEehhhcccCh--
Confidence            9999999987763    344445555555431      2222333446678899999999999999999999999999  


Q ss_pred             chhhHH---HHHHHHHHHHHHHHHHHHhHHhhhcCCCccccccccccccCChhHHHHHHHHHHHHHHhhhcccccchHHH
Q 012927          253 ANQTMK---KASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAH  329 (453)
Q Consensus       253 ~~~~~~---~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~l~~~~~~~~~i~~~~s~pl~~~p~~~~  329 (453)
                        ++++   +++..++.++.++|..+|++||+.|||++++.++.|+|  + +++.+.+++++++.++++||+|++|..++
T Consensus       271 --~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP--~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eI  345 (449)
T KOG1304|consen  271 --QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLP--Q-EILSQTVKLLLAIAIFLTYPLQFYVPIEI  345 (449)
T ss_pred             --hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCC--c-cHHHHHHHHHHHHHHHHcCchhhhhhHHH
Confidence              8999   99999999999999999999999999999999999998  5 99999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCCccccccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHcCChHHHHHHhhhhhcchhhhhhhHHHH
Q 012927          330 FEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMY  409 (453)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~v~~l~Ga~~~~~l~~ilP~l~~  409 (453)
                      +|+.+.+|.++                 .+.++..+.+|+.+++++..+|..+||++.+++++||++++.+.+++|++++
T Consensus       346 i~~~i~~k~~~-----------------~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~lie  408 (449)
T KOG1304|consen  346 IEPGIRKKFSE-----------------NRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIE  408 (449)
T ss_pred             HHHhHHHhcCc-----------------chhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHH
Confidence            99988765432                 2344788999999999999999999999999999999999999999999999


Q ss_pred             HHhhccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012927          410 FKQMNIE---AWTRKWVMLRVFSYVCFIVSTFGLVGSIQGI  447 (453)
Q Consensus       410 ~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~gt~~si~~i  447 (453)
                      ++..+++   +++++++.+..++++|++.++.|||.|+.++
T Consensus       409 l~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i  449 (449)
T KOG1304|consen  409 LITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI  449 (449)
T ss_pred             HHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence            9987543   4457788888999999999999999999864

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query453
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.71
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.59
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 99.43
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.65
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 97.97
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 97.67
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.71  E-value=4.9e-15  Score=148.73  Aligned_cols=364  Identities=10%  Similarity=0.026  Sum_probs=205.3

Q ss_pred             ccccchHHHHHHHHHhhhhchhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHH
Q 012927           24 IKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD  103 (453)
Q Consensus        24 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~  103 (453)
                      ++|+-+.++.....+++++|+|++.+|....++|.. +++..++.++..........|...+ .|+.|     ...+..+
T Consensus         6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~-~p~~G-----g~y~~~~   78 (445)
T 3l1l_A            6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFL-DPSPG-----GSYAYAR   78 (445)
T ss_dssp             -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHH-CCCTT-----THHHHHH
T ss_pred             CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHcc-CCCCC-----CchhhHH
Confidence            467889999999999999999999999998889964 7778888888888888888886654 23333     5666779


Q ss_pred             HHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHH-HHHHHhhcCCCCCchhhHHHHHHHH
Q 012927          104 MCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFG-AVQLILSQAPDFHNIQSLSVIAAVM  182 (453)
Q Consensus       104 ~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~-~i~~pl~~~~~l~~l~~~s~~~~~~  182 (453)
                      +.+||+.+++..+...+........+....++.+....+.. ......+++... +++......+..|....++......
T Consensus        79 ~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~  157 (445)
T 3l1l_A           79 RCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-KDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVL  157 (445)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGG-GSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             hHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc-cccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence            99999999999998888877777788888888777654321 111112222211 2222223333444444544433332


Q ss_pred             HHHHHHHHHHHHHHHHHhCCccccccccccccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchhhHHHHHH
Q 012927          183 SFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKAST  262 (453)
Q Consensus       183 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~  262 (453)
                      .+..   .+...+.-....++ +.-.+++. ........++..++....|+|.+........+|+|||   +|+.+|++.
T Consensus       158 ~i~~---~~~~~i~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p---~r~ip~a~~  229 (445)
T 3l1l_A          158 ALIP---IVGIAVFGWFWFRG-ETYMAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNP---KRNVPIATI  229 (445)
T ss_dssp             HHHH---HHHHHHTTSTTCCC-CCCCCC------------HHHHHHHHHHTTTTTTHHHHGGGGBSSH---HHHHHHHHH
T ss_pred             HHHH---HHHHHHHHHHHhCh-hhcccccC-ccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCc---cccccHHHH
Confidence            2221   11111111111111 00001111 1111224567889999999999999999999999998   678999999


Q ss_pred             HHHHHHHHHHHHHHhHHhhhcCCCccc----cccccccccCChhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHh-h
Q 012927          263 MSIITTTIFYLFCGGFGYAAFGDNTPG----NLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICE-K  337 (453)
Q Consensus       263 ~a~~~~~~~y~~~g~~gy~~fg~~~~~----~il~~~~~~~~~~l~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~-~  337 (453)
                      .+..+..++|...........+.+...    ....-+.....++...+..+...++.+.+.-......-+.+...-.. .
T Consensus       230 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~  309 (445)
T 3l1l_A          230 GGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGL  309 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999999998887766666543211    11111110012334455555555555555433333333333332221 1


Q ss_pred             cCCCCCCccccccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHcC----ChHHHHHHhhhhhcchhhhhhhHHHHHHhh
Q 012927          338 FPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFP----YFNQVLGVIGGVIFWPLTIYFPVEMYFKQM  413 (453)
Q Consensus       338 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp----~~~~v~~l~Ga~~~~~l~~ilP~l~~~~~~  413 (453)
                      .|  ++..+.++.+.         +.+-.+.+..+.....+....|    .++.+.++.+-  +..+.|.++.+.+++.+
T Consensus       310 lP--~~~~~~~~~~~---------P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~y~~~~~~~~~~r  376 (445)
T 3l1l_A          310 FP--PIFARVNKAGT---------PVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVI--FTLVPYLYTCAALLLLG  376 (445)
T ss_dssp             SC--GGGGCCCTTCC---------CHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred             Cc--HHHHhcCCCCC---------CHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh
Confidence            22  11111111111         2332222222121111111122    35556555542  34688889999888877


Q ss_pred             ccc
Q 012927          414 NIE  416 (453)
Q Consensus       414 ~~~  416 (453)
                      +++
T Consensus       377 ~~~  379 (445)
T 3l1l_A          377 HGH  379 (445)
T ss_dssp             SSS
T ss_pred             hcC
Confidence            544
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00