Citrus Sinensis ID: 012946

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450--

MLDNGVVGILAETSNKWERRAPLTPSHCSRLLLAGRQKSGVARILVQPSTKRIFNDAQYEEAGCEITSDLSECGLILGIKKPKLEMILPDRAYAFFSHTHKAQPENMALLDKILAQRVSLFDYELVEGNQGKRRLIAFGKFAGRAAIIDLLKGLGQRYLNLGYSTPFLTLGAAYMYPSLAAAKAAIISVGEEIATEGLPSGICPLVFVFTGSGHASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEILNQTTTIDSPFFRYDPKNDSYHHDMEGDGIICSVVDNLPTEFPKEASQHFGGLLSQFIGSLASVADIAKLPGNLRRACIAHGGALTSLYEYIPTMRNSG

cccccEEEEEccccccccccccccHHHHHHHHHccccccccEEEEEEccccccccHHHHHHcccEEccccccccEEEEEcccccccccccccEEEHHHHHccccccHHHHHHHHHcccEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccHHHHHHHHHHHHccccEEcccccHHHHHHHccccccccccccccccEEEEEEcccccccccccccccccccHHccccccccccHHccccccccEEEEcccccccccccccHHHHHHHHccccccEEEEEEEEccccccccccccccccccEEEEcccccccccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHcHHccccccccccccHHHHHHcc

cccccEEEEEEccccccHccccccHHHHHHHHHcccccccEEEEEEEccccEEccHHHHHHcccEEEcccccccEEEEEEcccHHHcccccEEEEEEHHHcccHcHHHHHHHHHHcccEEEEHHHEEccccccEEEEEcHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccHHHHHHHHHHHcccEEccHHHHHHHHHccccccccccccccccEEEEEEEEEcHHHHcEEccccccccHHHHHHcHHHHHHHHHHHHHHHHHEEEEcccccccccccccHHHHHHHHcccccEEEEEEEEccccccEEEEEccccccccEEEEcccccccccccccccEEEEEEcccccHccHHHHHHHHHHHHHHHHHHccccccccccHHHHEEEEEccccccHHHHHHHHHHHcc

MLDNGVVGILAEtsnkwerrapltpshcsRLLLAGRQKSGVarilvqpstkrifndaqyEEAGCEITSDLSEcglilgikkpklemilpdrayaffshthkaqpENMALLDKILAQRVSLFDYELVEGNQGKRRLIAFGKFAGRAAIIDLLKGLGQRylnlgystpflTLGAAYMYPSLAAAKAAIISVGEeiateglpsgicplvfvftgsghaSIAAQELFKllphtfvdpsrlpelfekagdssqstcssstkRVFQVYGCVvtsenmvepkdssrafdkndyyehpeqynpifhekiaPYASAIINCIYWekqfprllSTQQLRDLAqkgcplvgisdltcdmegSIEILnqtttidspffrydpkndsyhhdmegdgiicsvvdnlptefpkeasqHFGGLLSQFIGSLASVADIAKLPGNLRRACIAHGGALTSLYEYiptmrnsg

MLDNGVVGILAetsnkwerraplTPSHCSRLLLAGRQKSgvarilvqpstkriFNDAQYEEAGCEITSDLSECGLILGIKKPKLEMILPDRAYAFFSHTHKAQPENMALLDKILAQRVSLFDYELVEGNQGKRRLIAFGKFAGRAAIIDLLKGLGQRYLNLGYSTPFLTLGAAYMYPSLAAAKAAIISVGEEIATEGLPSGICPLVFVFTGSGHASIAAQELFKLLPHTFVDPSRLPELFEKAGDssqstcssstkrvFQVYGCVVtsenmvepkdssrAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEILNqtttidspffRYDPKNDSYHHDMEGDGIICSVVDNLPTEFPKEASQHFGGLLSQFIGSLASVADIAKLPGNLRRACIAHGgaltslyeyiptmrnsg

MLDNGVVGILAETSNKWERRAPLTPSHCSRLLLAGRQKSGVARILVQPSTKRIFNDAQYEEAGCEITSDLSECGLILGIKKPKLEMILPDRAYAFFSHTHKAQPENMALLDKILAQRVSLFDYELVEGNQGKRRLIAFGKFAGRAAIIDLLKGLGQRYLNLGYSTPFLTLGAAYMYPSLAAAKAAIISVGEEIATEGLPSGICPLVFVFTGSGHASIAAQELFKLLPHTFVDPSRLPELFEKAGDssqstcssstKRVFQVYGCVVTSENMVEPKDSSRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEILNQTTTIDSPFFRYDPKNDSYHHDMEGDGIICSVVDNLPTEFPKEASQHFGGLLSQFIGSLASVADIAKLPGNLRRACIAHGGALTSLYEYIPTMRNSG

*****VVGILAE****W*****LTPSHCSRLLLAGRQKSGVARILVQPSTKRIFNDAQYEEAGCEITSDLSECGLILGIKKPKLEMILPDRAYAFFSHTHKAQPENMALLDKILAQRVSLFDYELVEGNQGKRRLIAFGKFAGRAAIIDLLKGLGQRYLNLGYSTPFLTLGAAYMYPSLAAAKAAIISVGEEIATEGLPSGICPLVFVFTGSGHASIAAQELFKLLPHTFVDP***********************RVFQVYGCVVTS****************DYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEILNQTTTIDSPFFRYDPKNDSYHHDMEGDGIICSVVDNLPTEFPKEASQHFGGLLSQFIGSLASVADIAKLPGNLRRACIAHGGALTSLYEYIP******

**DNGVVGILAETSNKWERRAPLTPSHCSRLLLAGRQKSGVARILVQPSTKRIFNDAQYEEAGCEITSDLSECGLILGIKKPKLEMILPDRAYAFFSHTHKAQPENMALLDKILAQRVSLFDYELVEGNQGKRRLIAFGKFAGRAAIIDLLKGLGQRYLNLGYSTPFLTLGAAYMYPSLAAAKAAIISVGEEIATEGLPSGICPLVFVFTGSGHASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRD***KGCPLVGISDLTCDMEGSIEILNQTTTIDSPFFRYDPKNDSYHHDMEGDGIICSVVDNLPTEFPKEASQHFGGLLSQFIGSLASVADIAKLPGNLRRACIAHGGALTSLYEYIPTMRN**

MLDNGVVGILAETSNKWERRAPLTPSHCSRLLLAGRQKSGVARILVQPSTKRIFNDAQYEEAGCEITSDLSECGLILGIKKPKLEMILPDRAYAFFSHTHKAQPENMALLDKILAQRVSLFDYELVEGNQGKRRLIAFGKFAGRAAIIDLLKGLGQRYLNLGYSTPFLTLGAAYMYPSLAAAKAAIISVGEEIATEGLPSGICPLVFVFTGSGHASIAAQELFKLLPHTFVDPSRLPELFE**************KRVFQVYGCVVTSENMVEPKDSSRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEILNQTTTIDSPFFRYDPKNDSYHHDMEGDGIICSVVDNLPTEFPKEASQHFGGLLSQFIGSLASVADIAKLPGNLRRACIAHGGALTSLYEYIPTMRNSG

*LDNGVVGILAETSNKWERRAPLTPSHCSRLLLAGRQKSGVARILVQPSTKRIFNDAQYEEAGCEITSDLSECGLILGIKKPKLEMILPDRAYAFFSHTHKAQPENMALLDKILAQRVSLFDYELVEGNQGKRRLIAFGKFAGRAAIIDLLKGLGQRYLNLGYSTPFLTLGAAYMYPSLAAAKAAIISVGEEIATEGLPSGICPLVFVFTGSGHASIAAQELFKLLPHTFVDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEILNQTTTIDSPFFRYDPKNDSYHHDMEGDGIICSVVDNLPTEFPKEASQHFGGLLSQFIGSLASVADIAKLPGNLRRACIAHGGALTSLYEYIPTMRNS*

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		452	2.2.26 [Sep-21-2011]
Q9SMZ4		1064	Alpha-aminoadipic semiald	yes	no	0.988	0.420	0.697	0.0
Q99K67		926	Alpha-aminoadipic semiald	yes	no	0.940	0.458	0.380	2e-84
A8E657		926	Alpha-aminoadipic semiald	yes	no	0.940	0.458	0.378	2e-84
A2VCW9		926	Alpha-aminoadipic semiald	yes	no	0.938	0.457	0.381	3e-84
Q9UDR5		926	Alpha-aminoadipic semiald	yes	no	0.940	0.458	0.380	7e-84
P38997		369	Saccharopine dehydrogenas	yes	no	0.267	0.327	0.308	1e-06
P43065		382	Saccharopine dehydrogenas	N/A	no	0.269	0.319	0.325	4e-06
P38998		373	Saccharopine dehydrogenas	yes	no	0.267	0.324	0.305	1e-05
Q870G1		375	Saccharopine dehydrogenas	yes	no	0.267	0.322	0.291	4e-05
Q6FU27		372	Saccharopine dehydrogenas	yes	no	0.269	0.327	0.303	0.0004

>sp\|Q9SMZ4\|AASS_ARATH Alpha-aminoadipic semialdehyde synthase OS=Arabidopsis thaliana GN=LKR/SDH PE=1 SV=1	Back alignment and function desciption

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/450 (69%), Positives = 384/450 (85%), Gaps = 3/450 (0%)

Query: 2   LDNGVVGILAETSNKWERRAPLTPSHCSRLLLAGRQKSGVARILVQPSTKRIFNDAQYEE 61
           L NGVVGILAET NKWERR PLTPSHC+RLL  G+ ++G++RI+VQPS KRI +DA YE+
Sbjct: 12  LGNGVVGILAETVNKWERRTPLTPSHCARLLHGGKDRTGISRIVVQPSAKRIHHDALYED 71

Query: 62  AGCEITSDLSECGLILGIKKPKLEMILPDRAYAFFSHTHKAQPENMALLDKILAQRVSLF 121
            GCEI+ DLS+CGLILGIK+P+LEMILP+RAYAFFSHTHKAQ ENM LLDKIL++RV+L 
Sbjct: 72  VGCEISDDLSDCGLILGIKQPELEMILPERAYAFFSHTHKAQKENMPLLDKILSERVTLC 131

Query: 122 DYELVEGNQGKRRLIAFGKFAGRAAIIDLLKGLGQRYLNLGYSTPFLTLGAAYMYPSLAA 181
           DYEL+ G+ GKR L+AFGK+AGRA ++D L GLGQR L LGYSTPFL+LGA+YMY SLAA
Sbjct: 132 DYELIVGDHGKR-LLAFGKYAGRAGLVDFLHGLGQRKLILGYSTPFLSLGASYMYSSLAA 190

Query: 182 AKAAIISVGEEIATEGLPSGICPLVFVFTGSGHASIAAQELFKLLPHTFVDPSRLPELFE 241
           AKAA+ISVGEEIA++GLP GICPLVFVFTG+G+ S+ AQE+FKLLPHTFV+PS+LPELF 
Sbjct: 191 AKAAVISVGEEIASQGLPLGICPLVFVFTGTGNVSLGAQEIFKLLPHTFVEPSKLPELFV 250

Query: 242 KAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSRAFDKNDYYEHPEQYNPIFHEKI 301
           K  D   S    STKRV+QVYGC++TS++MVE KD S++FDK DYY HPE YNP+FHEKI
Sbjct: 251 K--DKGISQNGISTKRVYQVYGCIITSQDMVEHKDPSKSFDKADYYAHPEHYNPVFHEKI 308

Query: 302 APYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEILNQTTTID 361
           +PY S ++NC+YWEK+FP LLST+QL+DL +KG PLVGI D+TCD+ GSIE +N+ T ID
Sbjct: 309 SPYTSVLVNCMYWEKRFPCLLSTKQLQDLTKKGLPLVGICDITCDIGGSIEFVNRATLID 368

Query: 362 SPFFRYDPKNDSYHHDMEGDGIICSVVDNLPTEFPKEASQHFGGLLSQFIGSLASVADIA 421
           SPFFR++P N+SY+ DM+GDG++C  VD LPTEF KEASQHFG +LS F+GSLAS+ +I+
Sbjct: 369 SPFFRFNPSNNSYYDDMDGDGVLCMAVDILPTEFAKEASQHFGDILSGFVGSLASMTEIS 428

Query: 422 KLPGNLRRACIAHGGALTSLYEYIPTMRNS 451
            LP +L+RACI++ G LTSLYEYIP MR S
Sbjct: 429 DLPAHLKRACISYRGELTSLYEYIPRMRKS 458

Bifunctional enzyme that catalyzes the first two steps in lysine degradation. The N-terminal and the C-terminal contain lysine-oxoglutarate reductase and saccharopine dehydrogenase activity, respectively. Negatively regulates free Lys accumulation in seeds.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 5EC: .EC: 1EC: .EC: 9

>sp\|Q99K67\|AASS_MOUSE Alpha-aminoadipic semialdehyde synthase, mitochondrial OS=Mus musculus GN=Aass PE=2 SV=1	Back alignment and function description

>sp\|A8E657\|AASS_BOVIN Alpha-aminoadipic semialdehyde synthase, mitochondrial OS=Bos taurus GN=AASS PE=2 SV=1	Back alignment and function description

>sp\|A2VCW9\|AASS_RAT Alpha-aminoadipic semialdehyde synthase, mitochondrial OS=Rattus norvegicus GN=Aass PE=2 SV=1	Back alignment and function description

>sp\|Q9UDR5\|AASS_HUMAN Alpha-aminoadipic semialdehyde synthase, mitochondrial OS=Homo sapiens GN=AASS PE=1 SV=1	Back alignment and function description

>sp\|P38997\|LYS1_YARLI Saccharopine dehydrogenase [NAD(+), L-lysine-forming] OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=LYS5 PE=3 SV=1	Back alignment and function description

>sp\|P43065\|LYS1_CANAX Saccharopine dehydrogenase [NAD(+), L-lysine-forming] OS=Candida albicans GN=LYS1 PE=3 SV=1	Back alignment and function description

>sp\|P38998\|LYS1_YEAST Saccharopine dehydrogenase [NAD(+), L-lysine-forming] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LYS1 PE=1 SV=3	Back alignment and function description

>sp\|Q870G1\|LYS1_EMENI Saccharopine dehydrogenase [NAD(+), L-lysine-forming] OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=lysA PE=3 SV=2	Back alignment and function description

>sp\|Q6FU27\|LYS1_CANGA Saccharopine dehydrogenase [NAD(+), L-lysine-forming] OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=LYS1 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		452
255550277		448	aminoadipic semialdehyde synthase, putat	0.984	0.993	0.780	0.0
359484440		1052	PREDICTED: alpha-aminoadipic semialdehyd	0.991	0.425	0.747	0.0
255550269		1050	aminoadipic semialdehyde synthase, putat	0.991	0.426	0.749	0.0
23193176		518	monofunctional lysine-ketoglutarate redu	0.980	0.855	0.727	0.0
23193174		1052	bifunctional lysine-ketoglutarate reduct	0.980	0.421	0.720	0.0
449452622		1050	PREDICTED: alpha-aminoadipic semialdehyd	0.991	0.426	0.711	0.0
356547992		1048	PREDICTED: alpha-aminoadipic semialdehyd	0.980	0.422	0.720	0.0
2052508		1064	lysine-ketoglutarate reductase/saccharop	0.988	0.420	0.7	0.0
2052510		1064	lysine-ketoglutarate reductase/saccharop	0.988	0.420	0.7	0.0
18418158		1064	lysine-ketoglutarate reductase/saccharop	0.988	0.420	0.7	0.0

>gi\|255550277\|ref\|XP_002516189.1\| aminoadipic semialdehyde synthase, putative [Ricinus communis] gi\|223544675\|gb\|EEF46191.1\| aminoadipic semialdehyde synthase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  743 bits (1917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/451 (78%), Positives = 400/451 (88%), Gaps = 6/451 (1%)

Query: 1   MLDNGVVGILAETSNKWERRAPLTPSHCSRLLLAGRQKSGVARILVQPSTKRIFNDAQYE 60
           ML NGVVGILAE+SNKWERRAPLTP++C+ LLL GR K+GV+RI+VQPS KRI++DA Y+
Sbjct: 1   MLGNGVVGILAESSNKWERRAPLTPTNCATLLLHGRNKAGVSRIIVQPSPKRIYHDALYQ 60

Query: 61  EAGCEITSDLSECGLILGIKKPKLEMILPDRAYAFFSHTHKAQPENMALLDKILAQRVSL 120
           +AGCEI+ DLSECGLILGIKKPKLEMILPDRAYAFFSHTHKAQ ENM LLD+ILA+RVSL
Sbjct: 61  QAGCEISDDLSECGLILGIKKPKLEMILPDRAYAFFSHTHKAQQENMLLLDEILAKRVSL 120

Query: 121 FDYELVEGNQGKRRLIAFGKFAGRAAIIDLLKGLGQRYLNLGYSTPFLTLGAAYMYPSLA 180
           FDYELV+G Q ++RLIAFGKFAG AA++DL+ GLG+RYLNLGYSTPFL+LGAAYMY S+A
Sbjct: 121 FDYELVDGEQ-RKRLIAFGKFAGEAAMVDLMSGLGKRYLNLGYSTPFLSLGAAYMYTSVA 179

Query: 181 AAKAAIISVGEEIATEGLPSGICPLVFVFTGSGHASIAAQELFKLLPHTFVDPSRLPELF 240
           AAKAA+ISVGEEIA  GLP GICPLVFVFTGSG+AS+AAQE+FKLLPH FVDPSR PEL 
Sbjct: 180 AAKAAVISVGEEIAANGLPPGICPLVFVFTGSGNASVAAQEIFKLLPHAFVDPSRCPELL 239

Query: 241 EKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSRAFDKNDYYEHPEQYNPIFHEK 300
                + +   ++S+ RVFQVYGCVVT ++MVE KD+++ FDK DYY +PE Y PIFHEK
Sbjct: 240 -----AGKDMPAASSGRVFQVYGCVVTCKDMVEHKDTTKEFDKADYYANPEHYKPIFHEK 294

Query: 301 IAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEILNQTTTI 360
           IAPYAS IINCIYWEK+FPRLLST+QLRDLA KGCPL  I+DLTCDMEGSIEILNQTTTI
Sbjct: 295 IAPYASVIINCIYWEKRFPRLLSTRQLRDLASKGCPLTAITDLTCDMEGSIEILNQTTTI 354

Query: 361 DSPFFRYDPKNDSYHHDMEGDGIICSVVDNLPTEFPKEASQHFGGLLSQFIGSLASVADI 420
           D+PFFRYDP NDSYHHD+EG G+ICSVVDNLPTEFPKEA QHFG LLSQFIG+LAS ADI
Sbjct: 355 DTPFFRYDPLNDSYHHDIEGSGLICSVVDNLPTEFPKEACQHFGALLSQFIGTLASTADI 414

Query: 421 AKLPGNLRRACIAHGGALTSLYEYIPTMRNS 451
           AKLP +LRRACIAH GALT L+EYI  MRN+
Sbjct: 415 AKLPAHLRRACIAHEGALTPLFEYIKQMRNT 445

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359484440\|ref\|XP_003633109.1\| PREDICTED: alpha-aminoadipic semialdehyde synthase-like [Vitis vinifera] gi\|297738495\|emb\|CBI27740.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255550269\|ref\|XP_002516185.1\| aminoadipic semialdehyde synthase, putative [Ricinus communis] gi\|223544671\|gb\|EEF46187.1\| aminoadipic semialdehyde synthase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|23193176\|gb\|AAN14411.1\| monofunctional lysine-ketoglutarate reductase 1 [Gossypium hirsutum] gi\|23193178\|gb\|AAN14412.1\| monofunctional lysine-ketoglutarate reductase 2 [Gossypium hirsutum]	Back alignment and taxonomy information

>gi\|23193174\|gb\|AAN14410.1\| bifunctional lysine-ketoglutarate reductase/saccharopine dehydrogenase [Gossypium hirsutum]	Back alignment and taxonomy information

>gi\|449452622\|ref\|XP_004144058.1\| PREDICTED: alpha-aminoadipic semialdehyde synthase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356547992\|ref\|XP_003542388.1\| PREDICTED: alpha-aminoadipic semialdehyde synthase-like [Glycine max]	Back alignment and taxonomy information

>gi\|2052508\|gb\|AAB96826.1\| lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|2052510\|gb\|AAB96825.1\| lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi|18418158|ref|NP_567914.1| lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme [Arabidopsis thaliana] gi|30689619|ref|NP_849486.1| lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme [Arabidopsis thaliana] gi|332660782|gb|AEE86182.1| lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme [Arabidopsis thaliana] gi|332660783|gb|AEE86183.1| lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme [Arabidopsis thaliana]

Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		452
TAIR\|locus:2125964		1064	AT4G33150 [Arabidopsis thalian	0.988	0.420	0.693	2e-175
DICTYBASE\|DDB_G0284835		909	aass "lysine-ketoglutarate red	0.933	0.464	0.433	5.5e-93
WB\|WBGene00019819		934	R02D3.1 [Caenorhabditis elegan	0.926	0.448	0.398	7.4e-82
UNIPROTKB\|E1BWX4		930	AASS "Uncharacterized protein"	0.942	0.458	0.407	2e-81
UNIPROTKB\|Q6GN76		927	aass "MGC82978 protein" [Xenop	0.940	0.458	0.389	2.7e-77
MGI\|MGI:1353573		926	Aass "aminoadipate-semialdehyd	0.938	0.457	0.384	1.5e-76
RGD\|1310811		926	Aass "aminoadipate-semialdehyd	0.938	0.457	0.384	2.4e-76
UNIPROTKB\|F1SLX5		926	AASS "Uncharacterized protein"	0.938	0.457	0.381	3.1e-76
UNIPROTKB\|A8E657		926	AASS "Alpha-aminoadipic semial	0.938	0.457	0.381	6.3e-76
ZFIN\|ZDB-GENE-061220-8		935	aass "aminoadipate-semialdehyd	0.933	0.451	0.387	6.3e-76

TAIR\|locus:2125964 AT4G33150 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1704 (604.9 bits), Expect = 2.0e-175, P = 2.0e-175
 Identities = 312/450 (69%), Positives = 383/450 (85%)

Query:     2 LDNGVVGILAETSNKWERRAPLTPSHCSRLLLAGRQKSGVARILVQPSTKRIFNDAQYEE 61
             L NGVVGILAET NKWERR PLTPSHC+RLL  G+ ++G++RI+VQPS KRI +DA YE+
Sbjct:    12 LGNGVVGILAETVNKWERRTPLTPSHCARLLHGGKDRTGISRIVVQPSAKRIHHDALYED 71

Query:    62 AGCEITSDLSECGLILGIKKPKLEMILPDRAYAFFSHTHKAQPENMALLDKILAQRVSLF 121
              GCEI+ DLS+CGLILGIK+P+LEMILP+RAYAFFSHTHKAQ ENM LLDKIL++RV+L 
Sbjct:    72 VGCEISDDLSDCGLILGIKQPELEMILPERAYAFFSHTHKAQKENMPLLDKILSERVTLC 131

Query:   122 DYELVEGNQGKRRLIAFGKFAGRAAIIDLLKGLGQRYLNLGYSTPFLTLGAAYMYPSLAA 181
             DYEL+ G+ GKR L+AFGK+AGRA ++D L GLGQRYL+LGYSTPFL+LGA+YMY SLAA
Sbjct:   132 DYELIVGDHGKR-LLAFGKYAGRAGLVDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAA 190

Query:   182 AKAAIISVGEEIATEGLPSGICPLVFVFTGSGHASIAAQELFKLLPHTFVDPSRLPELFE 241
             AKAA+ISVGEEIA++GLP GICPLVFVFTG+G+ S+ AQE+FKLLPHTFV+PS+LPELF 
Sbjct:   191 AKAAVISVGEEIASQGLPLGICPLVFVFTGTGNVSLGAQEIFKLLPHTFVEPSKLPELFV 250

Query:   242 KAGDXXXXXXXXXXKRVFQVYGCVVTSENMVEPKDSSRAFDKNDYYEHPEQYNPIFHEKI 301
             K  D          KRV+QVYGC++TS++MVE KD S++FDK DYY HPE YNP+FHEKI
Sbjct:   251 K--DKGISQNGISTKRVYQVYGCIITSQDMVEHKDPSKSFDKADYYAHPEHYNPVFHEKI 308

Query:   302 APYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEILNQTTTID 361
             +PY S ++NC+YWEK+FP LLST+QL+DL +KG PLVGI D+TCD+ GSIE +N+ T ID
Sbjct:   309 SPYTSVLVNCMYWEKRFPCLLSTKQLQDLTKKGLPLVGICDITCDIGGSIEFVNRATLID 368

Query:   362 SPFFRYDPKNDSYHHDMEGDGIICSVVDNLPTEFPKEASQHFGGLLSQFIGSLASVADIA 421
             SPFFR++P N+SY+ DM+GDG++C  VD LPTEF KEASQHFG +LS F+GSLAS+ +I+
Sbjct:   369 SPFFRFNPSNNSYYDDMDGDGVLCMAVDILPTEFAKEASQHFGDILSGFVGSLASMTEIS 428

Query:   422 KLPGNLRRACIAHGGALTSLYEYIPTMRNS 451
              LP +L+RACI++ G LTSLYEYIP MR S
Sbjct:   429 DLPAHLKRACISYRGELTSLYEYIPRMRKS 458

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0047130 "saccharopine dehydrogenase (NADP+, L-lysine-forming) activity" evidence=IDA

GO:0004753 "saccharopine dehydrogenase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0019477 "L-lysine catabolic process" evidence=IMP;IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

DICTYBASE\|DDB_G0284835 aass "lysine-ketoglutarate reductase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

WB\|WBGene00019819 R02D3.1 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BWX4 AASS "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6GN76 aass "MGC82978 protein" [Xenopus laevis (taxid:8355)]	Back alignment and assigned GO terms

MGI\|MGI:1353573 Aass "aminoadipate-semialdehyde synthase" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1310811 Aass "aminoadipate-semialdehyde synthase" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SLX5 AASS "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|A8E657 AASS "Alpha-aminoadipic semialdehyde synthase, mitochondrial" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-061220-8 aass "aminoadipate-semialdehyde synthase" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.5.1.8	LOW CONFIDENCE prediction!
4th Layer	1.5.1.9	LOW CONFIDENCE prediction!
3rd Layer	1.5.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		452
PLN02819		1042	PLN02819, PLN02819, lysine-ketoglutarate reductase	0.0
cd12189		433	cd12189, LKR_SDH_like, bifunctional lysine ketoglu	0.0
cd05199		319	cd05199, SDH_like, Saccharopine Dehydrogenase like	6e-74
cd05199		319	cd05199, SDH_like, Saccharopine Dehydrogenase like	6e-32
pfam05222		135	pfam05222, AlaDh_PNT_N, Alanine dehydrogenase/PNT,	1e-26
smart01003		133	smart01003, AlaDh_PNT_N, Alanine dehydrogenase/PNT	1e-25
pfam01262		150	pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT,	8e-22
cd12188		351	cd12188, SDH, Saccharopine Dehydrogenase NAD-bindi	7e-18
smart01002		149	smart01002, AlaDh_PNT_C, Alanine dehydrogenase/PNT	2e-13
cd05304		363	cd05304, Rubrum_tdh, Rubrum transdehydrogenase NAD	4e-09
cd01620		317	cd01620, Ala_dh_like, Alanine dehydrogenase and re	1e-07
cd05305		359	cd05305, L-AlaDH, Alanine dehydrogenase NAD-bindin	4e-07
cd12181		295	cd12181, ceo_syn, N(5)-(carboxyethyl)ornithine syn	4e-05
COG0686		371	COG0686, Ald, Alanine dehydrogenase [Amino acid tr	5e-05
cd12188		351	cd12188, SDH, Saccharopine Dehydrogenase NAD-bindi	4e-04
cd01620		317	cd01620, Ala_dh_like, Alanine dehydrogenase and re	5e-04
cd12181		295	cd12181, ceo_syn, N(5)-(carboxyethyl)ornithine syn	8e-04
TIGR00518		370	TIGR00518, alaDH, alanine dehydrogenase	0.001

>gnl\|CDD\|215439 PLN02819, PLN02819, lysine-ketoglutarate reductase/saccharopine dehydrogenase	Back alignment and domain information

 Score =  778 bits (2010), Expect = 0.0
 Identities = 327/452 (72%), Positives = 389/452 (86%), Gaps = 9/452 (1%)

Query: 1   MLDNGVVGILAETSNKWERRAPLTPSHCSRLLLAGRQKSGVARILVQPSTKRIFNDAQYE 60
            L NGVVGILAET NKWERRAPLTPSHC+RLL +G+    V+RI+VQPS+KRI +DAQYE
Sbjct: 2   KLGNGVVGILAETVNKWERRAPLTPSHCARLLHSGKD-RTVSRIIVQPSSKRIHHDAQYE 60

Query: 61  EAGCEITSDLSECGLILGIKKPKLEMILPDRAYAFFSHTHKAQPENMALLDKILAQRVSL 120
           + GCEI+ DLS+CGLILG+K+PKLEM+LPDRAYAFFSHTHKAQPENM LLDKIL +RVSL
Sbjct: 61  DVGCEISEDLSDCGLILGVKQPKLEMLLPDRAYAFFSHTHKAQPENMPLLDKILEERVSL 120

Query: 121 FDYELVEGNQGKRRLIAFGKFAGRAAIIDLLKGLGQRYLNLGYSTPFLTLGAAYMYPSLA 180
           FDYEL+ G+ GKR L+AFGK+AGRA +ID  +GLGQR L+LGYSTPFL+LG++YMY SLA
Sbjct: 121 FDYELIVGDHGKR-LVAFGKYAGRAGMIDFFRGLGQRLLSLGYSTPFLSLGSSYMYSSLA 179

Query: 181 AAKAAIISVGEEIATEGLPSGICPLVFVFTGSGHASIAAQELFKLLPHTFVDPSRLPELF 240
           AAKAA+ISVGEEIA+ GLP GICPLVFVFTGSG+ S  AQE+FKLLPHTFV+PS+LPEL 
Sbjct: 180 AAKAAVISVGEEIASSGLPLGICPLVFVFTGSGNVSQGAQEIFKLLPHTFVEPSKLPEL- 238

Query: 241 EKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSRAFDKNDYYEHPEQYNPIFHEK 300
                 SQ+    STKRV+QVYGCVVTS++MVE KD S+ FDK DYY HPE YNP+FHEK
Sbjct: 239 ---KGISQN--KISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKADYYAHPEHYNPVFHEK 293

Query: 301 IAPYASAIINCIYWEKQFPRLLSTQQLRDLAQK-GCPLVGISDLTCDMEGSIEILNQTTT 359
           IAPYAS I+NC+YWEK+FPRLL+T+QL+DL +K GCPLVG+ D+TCD+ GSIE LN+TT+
Sbjct: 294 IAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDITCDIGGSIEFLNKTTS 353

Query: 360 IDSPFFRYDPKNDSYHHDMEGDGIICSVVDNLPTEFPKEASQHFGGLLSQFIGSLASVAD 419
           I+ PFFRY+P N+SYH DM+GDGI+C  VD LPTEF KEASQHFG +LS F+GSLAS+ +
Sbjct: 354 IEKPFFRYNPSNNSYHDDMDGDGILCMAVDILPTEFAKEASQHFGNILSPFVGSLASMKE 413

Query: 420 IAKLPGNLRRACIAHGGALTSLYEYIPTMRNS 451
           +A+LP +LRRACIAH G+LT L+EYIP MRNS
Sbjct: 414 LAELPSHLRRACIAHRGSLTPLFEYIPRMRNS 445

Length = 1042

>gnl\|CDD\|240665 cd12189, LKR_SDH_like, bifunctional lysine ketoglutarate reductase /saccharopine dehydrogenase enzyme	Back alignment and domain information

>gnl\|CDD\|240623 cd05199, SDH_like, Saccharopine Dehydrogenase like proteins	Back alignment and domain information

>gnl\|CDD\|240623 cd05199, SDH_like, Saccharopine Dehydrogenase like proteins	Back alignment and domain information

>gnl\|CDD\|218508 pfam05222, AlaDh_PNT_N, Alanine dehydrogenase/PNT, N-terminal domain	Back alignment and domain information

>gnl\|CDD\|214967 smart01003, AlaDh_PNT_N, Alanine dehydrogenase/PNT, N-terminal domain	Back alignment and domain information

>gnl\|CDD\|216396 pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal domain	Back alignment and domain information

>gnl\|CDD\|240664 cd12188, SDH, Saccharopine Dehydrogenase NAD-binding and catalytic domains	Back alignment and domain information

>gnl\|CDD\|214966 smart01002, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal domain	Back alignment and domain information

>gnl\|CDD\|240629 cd05304, Rubrum_tdh, Rubrum transdehydrogenase NAD-binding and catalytic domains	Back alignment and domain information

>gnl\|CDD\|240621 cd01620, Ala_dh_like, Alanine dehydrogenase and related dehydrogenases	Back alignment and domain information

>gnl\|CDD\|240630 cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	Back alignment and domain information

>gnl\|CDD\|240658 cd12181, ceo_syn, N(5)-(carboxyethyl)ornithine synthase	Back alignment and domain information

>gnl\|CDD\|223758 COG0686, Ald, Alanine dehydrogenase [Amino acid transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|240664 cd12188, SDH, Saccharopine Dehydrogenase NAD-binding and catalytic domains	Back alignment and domain information

>gnl\|CDD\|240621 cd01620, Ala_dh_like, Alanine dehydrogenase and related dehydrogenases	Back alignment and domain information

>gnl\|CDD\|240658 cd12181, ceo_syn, N(5)-(carboxyethyl)ornithine synthase	Back alignment and domain information

>gnl\|CDD\|129609 TIGR00518, alaDH, alanine dehydrogenase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		452
PLN02819		1042	lysine-ketoglutarate reductase/saccharopine dehydr	100.0
COG0686		371	Ald Alanine dehydrogenase [Amino acid transport an	100.0
TIGR00561		511	pntA NAD(P) transhydrogenase, alpha subunit. In so	100.0
TIGR00518		370	alaDH alanine dehydrogenase. The family of known L	100.0
PRK09424		509	pntA NAD(P) transhydrogenase subunit alpha; Provis	100.0
COG3288		356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	100.0
PF05222		136	AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal	100.0
PF01262		168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	99.97
PRK08306		296	dipicolinate synthase subunit A; Reviewed	99.92
TIGR02853		287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.16
KOG0172		445	consensus Lysine-ketoglutarate reductase/saccharop	99.09
PF00670		162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.98
PF02826		178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.67
cd01080		168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	97.56
PTZ00075		476	Adenosylhomocysteinase; Provisional	97.53
PF01488		135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.48
PRK14178		279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.43
PLN02928		347	oxidoreductase family protein	97.39
PLN00203		519	glutamyl-tRNA reductase	97.23
PRK14191		285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.19
PRK14192		283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.18
TIGR00936		406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	97.17
PRK14175		286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.13
PRK05476		425	S-adenosyl-L-homocysteine hydrolase; Provisional	97.1
TIGR01035		417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.01
PRK13243		333	glyoxylate reductase; Reviewed	97.01
PRK08410		311	2-hydroxyacid dehydrogenase; Provisional	96.97
cd05311		226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	96.95
PRK00045		423	hemA glutamyl-tRNA reductase; Reviewed	96.94
PRK06487		317	glycerate dehydrogenase; Provisional	96.92
PRK06932		314	glycerate dehydrogenase; Provisional	96.89
PRK07574		385	formate dehydrogenase; Provisional	96.88
PRK06436		303	glycerate dehydrogenase; Provisional	96.82
PRK15438		378	erythronate-4-phosphate dehydrogenase PdxB; Provis	96.82
COG0499		420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	96.81
cd00401		413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	96.76
COG0111		324	SerA Phosphoglycerate dehydrogenase and related de	96.76
PRK14184		286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.72
PLN03139		386	formate dehydrogenase; Provisional	96.69
cd00762		254	NAD_bind_malic_enz NAD(P) binding domain of malic	96.66
PRK15409		323	bifunctional glyoxylate/hydroxypyruvate reductase	96.65
PRK08605		332	D-lactate dehydrogenase; Validated	96.61
PRK00257		381	erythronate-4-phosphate dehydrogenase; Validated	96.59
PLN02306		386	hydroxypyruvate reductase	96.58
COG1052		324	LdhA Lactate dehydrogenase and related dehydrogena	96.54
PLN02494		477	adenosylhomocysteinase	96.51
PRK13940		414	glutamyl-tRNA reductase; Provisional	96.3
TIGR01327		525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	96.22
PRK12480		330	D-lactate dehydrogenase; Provisional	96.2
PRK11790		409	D-3-phosphoglycerate dehydrogenase; Provisional	96.2
PRK14174		295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.2
PRK15469		312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	96.19
PRK14176		287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.16
PRK14189		285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.15
PRK14190		284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.14
PRK13581		526	D-3-phosphoglycerate dehydrogenase; Provisional	96.08
cd05191		86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	96.05
PRK12549		284	shikimate 5-dehydrogenase; Reviewed	96.04
PRK00258		278	aroE shikimate 5-dehydrogenase; Reviewed	96.02
PRK10792		285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.91
PRK14183		281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.9
COG0281		432	SfcA Malic enzyme [Energy production and conversio	95.84
cd01075		200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	95.81
COG0373		414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	95.76
cd01078		194	NAD_bind_H4MPT_DH NADP binding domain of methylene	95.76
cd05312		279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	95.72
PF02882		160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	95.61
cd05213		311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	95.6
cd01065		155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	95.46
PRK14182		282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.45
PLN02516		299	methylenetetrahydrofolate dehydrogenase (NADP+)	95.45
PRK14180		282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.43
PRK14171		288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.38
PF03949		255	Malic_M: Malic enzyme, NAD binding domain; InterPr	95.29
KOG1370		434	consensus S-adenosylhomocysteine hydrolase [Coenzy	95.29
PRK14194		301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.26
PRK12861		764	malic enzyme; Reviewed	95.18
PRK14173		287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.1
PRK14170		284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.03
PRK14169		282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.98
PRK14172		278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.85
PRK07232		752	bifunctional malic enzyme oxidoreductase/phosphotr	94.83
PRK14179		284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.76
PLN02477		410	glutamate dehydrogenase	94.7
PRK14166		282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.59
PRK14186		297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.55
TIGR00507		270	aroE shikimate 5-dehydrogenase. This model finds p	94.54
cd05212		140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	94.51
PRK12862		763	malic enzyme; Reviewed	94.48
PLN02616		364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	94.43
PRK14181		287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.34
COG0190		283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	94.33
PLN02897		345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	94.29
PRK14193		284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.28
PRK14982		340	acyl-ACP reductase; Provisional	94.27
PRK14177		284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.18
cd01076		227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	94.17
PLN03129		581	NADP-dependent malic enzyme; Provisional	94.1
PRK14168		297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.0
cd01079		197	NAD_bind_m-THF_DH NAD binding domain of methylene-	93.93
COG0169		283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	93.71
PRK12749		288	quinate/shikimate dehydrogenase; Reviewed	93.68
COG0334		411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	93.67
PRK14187		294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.67
PRK12548		289	shikimate 5-dehydrogenase; Provisional	93.64
KOG0069		336	consensus Glyoxylate/hydroxypyruvate reductase (D-	93.59
PRK14167		297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.52
PRK14030		445	glutamate dehydrogenase; Provisional	93.18
PRK13529		563	malate dehydrogenase; Provisional	92.67
PRK14185		293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.65
PRK14031		444	glutamate dehydrogenase; Provisional	92.63
TIGR01809		282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	92.53
KOG0068		406	consensus D-3-phosphoglycerate dehydrogenase, D-is	92.46
PRK14188		296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.1
PF03807		96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	92.05
TIGR02992		326	ectoine_eutC ectoine utilization protein EutC. Mem	91.92
COG2084		286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	91.28
PF03446		163	NAD_binding_2: NAD binding domain of 6-phosphogluc	91.26
PTZ00317		559	NADP-dependent malic enzyme; Provisional	91.2
COG1748		389	LYS9 Saccharopine dehydrogenase and related protei	91.12
PRK05579		399	bifunctional phosphopantothenoylcysteine decarboxy	91.11
COG2910		211	Putative NADH-flavin reductase [General function p	90.92
PRK14027		283	quinate/shikimate dehydrogenase; Provisional	90.48
cd05211		217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	90.23
PRK00676		338	hemA glutamyl-tRNA reductase; Validated	90.21
COG1064		339	AdhP Zn-dependent alcohol dehydrogenases [General	89.66
PRK13403		335	ketol-acid reductoisomerase; Provisional	89.58
PRK08618		325	ornithine cyclodeaminase; Validated	89.55
PRK08291		330	ectoine utilization protein EutC; Validated	89.52
PLN02712		667	arogenate dehydrogenase	89.49
PRK11559		296	garR tartronate semialdehyde reductase; Provisiona	89.29
PRK12550		272	shikimate 5-dehydrogenase; Reviewed	89.25
KOG0029		501	consensus Amine oxidase [Secondary metabolites bio	88.9
TIGR01505		291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	88.64
PRK05479		330	ketol-acid reductoisomerase; Provisional	88.49
cd05313		254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	87.89
COG0604		326	Qor NADPH:quinone reductase and related Zn-depende	87.88
PRK11199		374	tyrA bifunctional chorismate mutase/prephenate deh	87.74
PF01118		121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	87.69
COG5322		351	Predicted dehydrogenase [General function predicti	86.98
PF13460		183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	86.47
PTZ00082		321	L-lactate dehydrogenase; Provisional	86.31
PF03435		386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	86.26
PLN02256		304	arogenate dehydrogenase	86.2
PRK15461		296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	85.6
KOG1201		300	consensus Hydroxysteroid 17-beta dehydrogenase 11	85.1
PRK09414		445	glutamate dehydrogenase; Provisional	85.03
PRK12490		299	6-phosphogluconate dehydrogenase-like protein; Rev	84.77
PTZ00079		454	NADP-specific glutamate dehydrogenase; Provisional	84.66
PRK09880		343	L-idonate 5-dehydrogenase; Provisional	84.36
PRK08655		437	prephenate dehydrogenase; Provisional	84.32
PF00070		80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	84.21
TIGR00872		298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	84.12
PF01210		157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	83.87
TIGR02371		325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	83.76
PRK09599		301	6-phosphogluconate dehydrogenase-like protein; Rev	83.67
PF13241		103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	82.48
PRK15182		425	Vi polysaccharide biosynthesis protein TviB; Provi	82.46
PLN02520		529	bifunctional 3-dehydroquinate dehydratase/shikimat	82.38
TIGR03026		411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	82.21
PLN00106		323	malate dehydrogenase	82.09
PRK00066		315	ldh L-lactate dehydrogenase; Reviewed	81.82
PF07992		201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	81.35
PRK06046		326	alanine dehydrogenase; Validated	81.19
COG2085		211	Predicted dinucleotide-binding enzymes [General fu	81.1
PRK14874		334	aspartate-semialdehyde dehydrogenase; Provisional	80.47
KOG2250		514	consensus Glutamate/leucine/phenylalanine/valine d	80.33
TIGR01470		205	cysG_Nterm siroheme synthase, N-terminal domain. T	80.1
PLN02172		461	flavin-containing monooxygenase FMO GS-OX	80.07

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase	Back alignment and domain information

Probab=100.00  E-value=2.4e-102  Score=873.48  Aligned_cols=442  Identities=72%  Similarity=1.244  Sum_probs=411.5

Q ss_pred             CCCcEEEEeeccCCCCCcceecChHHHHHHHHcCCCCCCeeEEEEcCCCCCCCCchhhhhcCcEEccccccccEEEEecC
Q 012946            2 LDNGVVGILAETSNKWERRAPLTPSHCSRLLLAGRQKSGVARILVQPSTKRIFNDAQYEEAGCEITSDLSECGLILGIKK   81 (452)
Q Consensus         2 ~~~~~IGi~kE~~~~~ErRvaLtP~~v~~L~~~G~~~~~~~~V~VE~gag~~FsD~eY~~aGa~I~~~~~~~diIl~Vke   81 (452)
                      ....+|||+||++++|||||||||++|++|+++||. .+.++|+||+|++|+|+|++|++|||+|++++++||||||||+
T Consensus         3 ~~~~~IgI~kE~~~~~E~RVaLtP~~v~~L~~~G~~-~~~~~V~VE~gA~a~f~D~~Y~~AGA~I~~~~~~adiIl~Vke   81 (1042)
T PLN02819          3 LGNGVVGILAETVNKWERRAPLTPSHCARLLHSGKD-RTVSRIIVQPSSKRIHHDAQYEDVGCEISEDLSDCGLILGVKQ   81 (1042)
T ss_pred             cCCcEEEEEecCCCCCCCccCcCHHHHHHHHHCCCC-CCCCEEEEcCCCCCCCChHHHHHCCCEEECCCCCCCEEEEECC
Confidence            356789999999966999999999999999999941 1235999999999999999999999999998899999999999


Q ss_pred             CCcccccCCCceEEEecccCCCCCCHHHHHHHHHcCCeEEEeecccccCCCccccchhHHHHHHHHHHHHHHHHHHHhhc
Q 012946           82 PKLEMILPDRAYAFFSHTHKAQPENMALLDKILAQRVSLFDYELVEGNQGKRRLIAFGKFAGRAAIIDLLKGLGQRYLNL  161 (452)
Q Consensus        82 p~~~~l~~~~~~~~fs~~~~~q~~n~~ll~~l~~k~it~i~~E~i~~~~g~~~L~s~~~~AG~~avi~al~~~g~~~l~~  161 (452)
                      |+++++++++++++|+|+||+|++|++++++|+++|+|+||||.|+|++|+| |.+||+|||++|++++|+++|+++|.+
T Consensus        82 P~~eell~~~~~i~fs~~~~aq~~n~~ll~~l~~k~it~~ayE~i~~~~G~r-l~~fg~~AG~~g~~~~l~~~g~~~L~~  160 (1042)
T PLN02819         82 PKLEMLLPDRAYAFFSHTHKAQPENMPLLDKILEERVSLFDYELIVGDHGKR-LVAFGKYAGRAGMIDFFRGLGQRLLSL  160 (1042)
T ss_pred             CCHHHhcCCCEEEEEecccccccCCHHHHHHHHHcCCeEEEEeceECCCCCE-EeechHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999998888889999999999999999999999999999999999999999 999999999999999999999999999


Q ss_pred             CCCCCcccccccccCccHHHHHHHHHHhhHHHHhcCCCCCCCCceEEEEcCcHHHHHHHHHHhcCCCEEeCCCChhhHHh
Q 012946          162 GYSTPFLTLGAAYMYPSLAAAKAAIISVGEEIATEGLPSGICPLVFVFTGSGHASIAAQELFKLLPHTFVDPSRLPELFE  241 (452)
Q Consensus       162 ~~~~P~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~G~~~~i~p~kv~V~G~G~vg~gAi~~a~~LGa~vv~~~~l~~~~e  241 (452)
                      ++.+|||.++++|+|+|+++++++|++.|++|+.+|+|.+++|++|+|+|+|+||.||+++|..|||+.++|.+|+++.+
T Consensus       161 ~~~~pf~~l~~~~~y~~~~~~~~a~~~~G~~i~~~g~p~gv~P~~vVi~G~G~Vg~gA~~i~~~lg~~~v~~~~l~~l~~  240 (1042)
T PLN02819        161 GYSTPFLSLGSSYMYSSLAAAKAAVISVGEEIASSGLPLGICPLVFVFTGSGNVSQGAQEIFKLLPHTFVEPSKLPELKG  240 (1042)
T ss_pred             cCCCcccccccccccCCHHHHHHHHHhccceeeccCCCCCCCCeEEEEeCCchHHHHHHHHHhhcCCCccCHHHHHHHHH
Confidence            99999999999999999999999999999999999998899999999999999999999999999999999999998863


Q ss_pred             hhCCCCCccccCCCCceeEEEeeeeecccccccCCCCCCCcccccccCcCCcCcchHhhhcCCCcEEEeccccCCCCCcc
Q 012946          242 KAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINCIYWEKQFPRL  321 (452)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~a~~~~~~P~L  321 (452)
                      .++   + .  ....+++++|+|.+..||++++++.++.|+++|||+|||.|.+.|++++++++||||||++|..++|+|
T Consensus       241 ~~~---~-~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~l  314 (1042)
T PLN02819        241 ISQ---N-K--ISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKADYYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRL  314 (1042)
T ss_pred             hhc---C-C--ccccccceeeeeecChHHHhhccCCccccchhhhccCchhccchhHHHhHhhCCEEEeeeecCCCCCce
Confidence            210   0 0  111334458999999999999998677999999999999999999999999999999999999999999


Q ss_pred             cCHH-HHHHhhcCCCCeEEEEEeeecCCCCeeeecccccCCCCEEEeCCCCCCCCCCCCCCCeEEEeeCCcCCcchHHHH
Q 012946          322 LSTQ-QLRDLAQKGCPLVGISDLTCDMEGSIEILNQTTTIDSPFFRYDPKNDSYHHDMEGDGIICSVVDNLPTEFPKEAS  400 (452)
Q Consensus       322 it~e-~l~~mk~gs~~l~vIvDvs~D~gG~iE~~~~~Tt~~~P~~~~~~~~~~~~~~~~~~gV~~~~vdnLPs~lp~~AS  400 (452)
                      ||++ |++.||+|++||+||||||||+||||||+.++|||++|+|.|||.+++.+|++..+||+||||||||++||++||
T Consensus       315 vt~~~~~~~mk~G~~~l~vI~DVs~D~gG~ie~~~~~Tt~~~P~~~~~~~~~~~~~~~~~~gv~~~~VdNlP~~lPr~AS  394 (1042)
T PLN02819        315 LTTKQLQDLTRKGGCPLVGVCDITCDIGGSIEFLNKTTSIEKPFFRYNPSNNSYHDDMDGDGILCMAVDILPTEFAKEAS  394 (1042)
T ss_pred             eCHHHHHHhhcCCCccceEEEEEccCCCCCeeecccCCCCcCCeEeecccccccccccCCCCeEEEEECCccccCHHHHH
Confidence            9999 777889999999999999999999999988999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcccccccCCHHHHhchhhcCCeecCCCCchHHhhhC
Q 012946          401 QHFGGLLSQFIGSLASVADIAKLPGNLRRACIAHGGALTSLYEYIPTMRNS  451 (452)
Q Consensus       401 ~~fs~~l~~~l~~l~~~~~~~~~~~~l~~a~i~~~G~lt~~~~yl~~~~~~  451 (452)
                      ++||++|+|||..|++.+.....++.|++|+++++|+||++|+||++||+.
T Consensus       395 ~~f~n~llpyv~~la~~g~~~~~~~~l~~a~~~~~G~lT~~~~yi~~~~~~  445 (1042)
T PLN02819        395 QHFGNILSPFVGSLASMKELAELPSHLRRACIAHRGSLTPLFEYIPRMRNS  445 (1042)
T ss_pred             HHHHHHHHHHHHHHHhCCchhccCHHHhcceeeeCCEecCchHHHHHHHhc
Confidence            999999999999999776422679999999999999999999999999985

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit	Back alignment and domain information

>TIGR00518 alaDH alanine dehydrogenase	Back alignment and domain information

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional	Back alignment and domain information

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]	Back alignment and domain information

>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1	Back alignment and domain information

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1	Back alignment and domain information

>PRK08306 dipicolinate synthase subunit A; Reviewed	Back alignment and domain information

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit	Back alignment and domain information

>KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism]	Back alignment and domain information

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3	Back alignment and domain information

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related	Back alignment and domain information

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase	Back alignment and domain information

>PTZ00075 Adenosylhomocysteinase; Provisional	Back alignment and domain information

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases	Back alignment and domain information

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PLN02928 oxidoreductase family protein	Back alignment and domain information

>PLN00203 glutamyl-tRNA reductase	Back alignment and domain information

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>TIGR00936 ahcY adenosylhomocysteinase	Back alignment and domain information

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional	Back alignment and domain information

>TIGR01035 hemA glutamyl-tRNA reductase	Back alignment and domain information

>PRK13243 glyoxylate reductase; Reviewed	Back alignment and domain information

>PRK08410 2-hydroxyacid dehydrogenase; Provisional	Back alignment and domain information

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2	Back alignment and domain information

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed	Back alignment and domain information

>PRK06487 glycerate dehydrogenase; Provisional	Back alignment and domain information

>PRK06932 glycerate dehydrogenase; Provisional	Back alignment and domain information

>PRK07574 formate dehydrogenase; Provisional	Back alignment and domain information

>PRK06436 glycerate dehydrogenase; Provisional	Back alignment and domain information

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional	Back alignment and domain information

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]	Back alignment and domain information

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)	Back alignment and domain information

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]	Back alignment and domain information

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PLN03139 formate dehydrogenase; Provisional	Back alignment and domain information

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme	Back alignment and domain information

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional	Back alignment and domain information

>PRK08605 D-lactate dehydrogenase; Validated	Back alignment and domain information

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated	Back alignment and domain information

>PLN02306 hydroxypyruvate reductase	Back alignment and domain information

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]	Back alignment and domain information

>PLN02494 adenosylhomocysteinase	Back alignment and domain information

>PRK13940 glutamyl-tRNA reductase; Provisional	Back alignment and domain information

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase	Back alignment and domain information

>PRK12480 D-lactate dehydrogenase; Provisional	Back alignment and domain information

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional	Back alignment and domain information

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional	Back alignment and domain information

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional	Back alignment and domain information

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins	Back alignment and domain information

>PRK12549 shikimate 5-dehydrogenase; Reviewed	Back alignment and domain information

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed	Back alignment and domain information

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>COG0281 SfcA Malic enzyme [Energy production and conversion]	Back alignment and domain information

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase	Back alignment and domain information

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	Back alignment and domain information

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase	Back alignment and domain information

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1	Back alignment and domain information

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)	Back alignment and domain information

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase	Back alignment and domain information

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase	Back alignment and domain information

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)	Back alignment and domain information

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e	Back alignment and domain information

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]	Back alignment and domain information

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK12861 malic enzyme; Reviewed	Back alignment and domain information

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	Back alignment and domain information

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PLN02477 glutamate dehydrogenase	Back alignment and domain information

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>TIGR00507 aroE shikimate 5-dehydrogenase	Back alignment and domain information

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase	Back alignment and domain information

>PRK12862 malic enzyme; Reviewed	Back alignment and domain information

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative	Back alignment and domain information

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]	Back alignment and domain information

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative	Back alignment and domain information

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK14982 acyl-ACP reductase; Provisional	Back alignment and domain information

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1	Back alignment and domain information

>PLN03129 NADP-dependent malic enzyme; Provisional	Back alignment and domain information

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase	Back alignment and domain information

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]	Back alignment and domain information

>PRK12749 quinate/shikimate dehydrogenase; Reviewed	Back alignment and domain information

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	Back alignment and domain information

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK12548 shikimate 5-dehydrogenase; Provisional	Back alignment and domain information

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]	Back alignment and domain information

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK14030 glutamate dehydrogenase; Provisional	Back alignment and domain information

>PRK13529 malate dehydrogenase; Provisional	Back alignment and domain information

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PRK14031 glutamate dehydrogenase; Provisional	Back alignment and domain information

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type	Back alignment and domain information

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]	Back alignment and domain information

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	Back alignment and domain information

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain	Back alignment and domain information

>TIGR02992 ectoine_eutC ectoine utilization protein EutC	Back alignment and domain information

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	Back alignment and domain information

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1	Back alignment and domain information

>PTZ00317 NADP-dependent malic enzyme; Provisional	Back alignment and domain information

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]	Back alignment and domain information

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	Back alignment and domain information

>COG2910 Putative NADH-flavin reductase [General function prediction only]	Back alignment and domain information

>PRK14027 quinate/shikimate dehydrogenase; Provisional	Back alignment and domain information

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase	Back alignment and domain information

>PRK00676 hemA glutamyl-tRNA reductase; Validated	Back alignment and domain information

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]	Back alignment and domain information

>PRK13403 ketol-acid reductoisomerase; Provisional	Back alignment and domain information

>PRK08618 ornithine cyclodeaminase; Validated	Back alignment and domain information

>PRK08291 ectoine utilization protein EutC; Validated	Back alignment and domain information

>PLN02712 arogenate dehydrogenase	Back alignment and domain information

>PRK11559 garR tartronate semialdehyde reductase; Provisional	Back alignment and domain information

>PRK12550 shikimate 5-dehydrogenase; Reviewed	Back alignment and domain information

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase	Back alignment and domain information

>PRK05479 ketol-acid reductoisomerase; Provisional	Back alignment and domain information

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2	Back alignment and domain information

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]	Back alignment and domain information

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional	Back alignment and domain information

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate	Back alignment and domain information

>COG5322 Predicted dehydrogenase [General function prediction only]	Back alignment and domain information

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B	Back alignment and domain information

>PTZ00082 L-lactate dehydrogenase; Provisional	Back alignment and domain information

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase	Back alignment and domain information

>PLN02256 arogenate dehydrogenase	Back alignment and domain information

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional	Back alignment and domain information

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>PRK09414 glutamate dehydrogenase; Provisional	Back alignment and domain information

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed	Back alignment and domain information

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional	Back alignment and domain information

>PRK09880 L-idonate 5-dehydrogenase; Provisional	Back alignment and domain information

>PRK08655 prephenate dehydrogenase; Provisional	Back alignment and domain information

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Back alignment and domain information

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)	Back alignment and domain information

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate	Back alignment and domain information

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type	Back alignment and domain information

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed	Back alignment and domain information

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B	Back alignment and domain information

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional	Back alignment and domain information

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase	Back alignment and domain information

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase	Back alignment and domain information

>PLN00106 malate dehydrogenase	Back alignment and domain information

>PRK00066 ldh L-lactate dehydrogenase; Reviewed	Back alignment and domain information

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Back alignment and domain information

>PRK06046 alanine dehydrogenase; Validated	Back alignment and domain information

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]	Back alignment and domain information

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional	Back alignment and domain information

>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain	Back alignment and domain information

>PLN02172 flavin-containing monooxygenase FMO GS-OX	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		452
2q99_A		381	Crystal Structure Of Saccharopine Dehydrogenase Fro		7e-07
3ugk_A		373	Crystal Structure Of C205s Mutant And Saccharopine		1e-06
2qrj_A		394	Crystal Structure Of Sulfate-Bound Saccharopine Deh		1e-06

>pdb|2Q99|A Chain A, Crystal Structure Of Saccharopine Dehydrogenase From Saccharomyces Cerevisiae Length = 381

Back alignment and structure

Iteration: 1

Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 13/134 (9%) Query: 18 ERRAPLTPSHCSRLLLAGRQKSGVARILVQPSTKRIFNDAQYEEAGCEITSDLS-----E 72 E RA LTP+ +L+ G +I V+ S + FN +Y +AG I S Sbjct: 24 EARAALTPTTVKKLIAKG------FKIYVEDSPQSTFNINEYRQAGAIIVPAGSWKTAPR 77 Query: 73 CGLILGIKK-PKLEMILPDRAYAFFSHTHKAQPENMALLDKILAQRVSLFDYELVEGNQG 131 +I+G+K+ P+ + + F+H +K Q +L + + +L+D E +E +QG Sbjct: 78 DRIIIGLKEXPETDTFPLVHEHIQFAHCYKDQAGWQNVLXRFIKGHGTLYDLEFLENDQG 137 Query: 132 KRRLIAFGKFAGRA 145 RR+ AFG +AG A Sbjct: 138 -RRVAAFGFYAGFA 150

PyMOL of 2q99

>pdb|3UGK|A Chain A, Crystal Structure Of C205s Mutant And Saccharopine Dehydrogenase From Saccharomyces Cerevisiae. Length = 373

Back alignment and structure

>pdb|2QRJ|A Chain A, Crystal Structure Of Sulfate-Bound Saccharopine Dehydrogenase (L-Lys Forming) From Saccharomyces Cerevisiae Length = 394

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		452
2qrj_A		394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	5e-72
1x13_A		401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	2e-07
3p2y_A		381	Alanine dehydrogenase/pyridine nucleotide transhy;	2e-07
4dio_A		405	NAD(P) transhydrogenase subunit alpha PART 1; stru	4e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1l7d_A		384	Nicotinamide nucleotide transhydrogenase, subunit	1e-06

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* Length = 394	Back alignment and structure

 Score =  231 bits (590), Expect = 5e-72
 Identities = 86/435 (19%), Positives = 138/435 (31%), Gaps = 91/435 (20%)

Query: 6   VVGILAETSNKWERRAPLTPSHCSRLLLAGRQKSGVARILVQPSTKRIFNDAQYEEAGCE 65
            + + AET    E RA LTP+   +L+  G       +I V+ S +  FN  +Y +AG  
Sbjct: 26  TLHLRAETKP-LEARAALTPTTVKKLIAKG------FKIYVEDSPQSTFNINEYRQAGAI 78

Query: 66  ITSDLSE-----CGLILGIKK-PKLEMILPDRAYAFFSHTHKAQPENMALLDKILAQRVS 119
           I    S        +I+G+K+ P+ +       +  F+H +K Q     +L + +    +
Sbjct: 79  IVPAGSWKTAPRDRIIIGLKEMPETDTFPLVHEHIQFAHCYKDQAGWQNVLMRFIKGHGT 138

Query: 120 LFDYELVEGNQGKRRLIAFGKFAGRAAIIDLLKGLGQRYLNLGYSTPFLTLGAAYMYPSL 179
           L+D E +E N   RR+ AFG +AG A     ++    +  +         L A   YP+ 
Sbjct: 139 LYDLEFLE-NDQGRRVAAFGFYAGFAGAALGVRDWAFKQTHSD----DEDLPAVSPYPN- 192

Query: 180 AAAKAAIISVGEEIATEGLPSGICPLVFVFTGSGHASIAAQELFKLLPHTFVDPSRLPEL 239
              KA +  V ++           P V +    G     A +L   +             
Sbjct: 193 --EKALVKDVTKDYKEALATGARKPTVLIIGALGRCGSGAIDLLHKVGIPDA-------- 242

Query: 240 FEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSRAFDKNDYYEHPEQYNPIFHE 299
                                           +   D         + E           
Sbjct: 243 -------------------------------NILKWDIKETSRGGPFDEI---------- 261

Query: 300 KIAPYASAIINCIYWEKQFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEG---SIEILNQ 356
              P A   INCIY  K      +      L      L  + D++ D       I I   
Sbjct: 262 ---PQADIFINCIYLSKPIAPFTNM---EKLNNPNRRLRTVVDVSADTTNPHNPIPIYTV 315

Query: 357 TTTIDSPFFRYDPKNDSYHHDMEGDGIICSVVDNLPTEFPKEASQHFGGLLSQFIGSLAS 416
            T  + P                G  +    +D+LP+  P+EAS+ F   L   +  L  
Sbjct: 316 ATVFNKPTVLV--------PTTAGPKLSVISIDHLPSLLPREASEFFSHDLLPSLELLPQ 367

Query: 417 VADIAKLPGNLRRAC 431
                       RA 
Sbjct: 368 RKT----APVWVRAK 378

PyMOL of 2qrj

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* Length = 401	Back alignment and structure

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} Length = 381	Back alignment and structure

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} Length = 405	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* Length = 384	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		452
2qrj_A		394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	100.0
3p2y_A		381	Alanine dehydrogenase/pyridine nucleotide transhy;	100.0
4dio_A		405	NAD(P) transhydrogenase subunit alpha PART 1; stru	100.0
1pjc_A		361	Protein (L-alanine dehydrogenase); oxidoreductase,	100.0
1l7d_A		384	Nicotinamide nucleotide transhydrogenase, subunit	100.0
2eez_A		369	Alanine dehydrogenase; TTHA0216, structural genomi	100.0
2vhw_A		377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	100.0
1x13_A		401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	100.0
2rir_A		300	Dipicolinate synthase, A chain; structural genomic	99.75
3d4o_A		293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.64
2a9f_A		398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	99.3
1vl6_A		388	Malate oxidoreductase; TM0542, NAD-dependent malic	99.19
1v8b_A		479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	98.11
1a4i_A		301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.09
3d64_A		494	Adenosylhomocysteinase; structural genomics, ssgci	97.97
3l07_A		285	Bifunctional protein fold; structural genomics, ID	97.95
1b0a_A		288	Protein (fold bifunctional protein); folate, dehyd	97.95
3p2o_A		285	Bifunctional protein fold; structural genomics, ce	97.88
4a5o_A		286	Bifunctional protein fold; oxidoreductase, hydrola	97.87
3gvp_A		435	Adenosylhomocysteinase 3; protein CO-factor comple	97.76
2c2x_A		281	Methylenetetrahydrofolate dehydrogenase- methenylt	97.71
3ngx_A		276	Bifunctional protein fold; methylenetetrahydrofola	97.63
4a26_A		300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	97.59
3n58_A		464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.57
3jtm_A		351	Formate dehydrogenase, mitochondrial; mitochondrio	97.52
3h9u_A		436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.51
3gg9_A		352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	97.5
1edz_A		320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	97.43
3gvx_A		290	Glycerate dehydrogenase related protein; NYSGXRC,	97.24
4hy3_A		365	Phosphoglycerate oxidoreductase; PSI-biology, stru	97.18
2yq5_A		343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	97.13
4e5n_A		330	Thermostable phosphite dehydrogenase; D-2-hydroxya	97.12
2pi1_A		334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	97.11
4g2n_A		345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	97.11
3evt_A		324	Phosphoglycerate dehydrogenase; structural genomic	97.08
1wwk_A		307	Phosphoglycerate dehydrogenase; riken structural g	97.08
2g76_A		335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	97.04
4dgs_A		340	Dehydrogenase; structural genomics, PSI-biology, N	97.01
2ekl_A		313	D-3-phosphoglycerate dehydrogenase; structural gen	97.01
3oet_A		381	Erythronate-4-phosphate dehydrogenase; structural	96.99
1qp8_A		303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	96.98
1xdw_A		331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	96.95
3hg7_A		324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	96.94
3k5p_A		416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	96.9
1mx3_A		347	CTBP1, C-terminal binding protein 1; nuclear prote	96.85
3pp8_A		315	Glyoxylate/hydroxypyruvate reductase A; structural	96.8
3ce6_A		494	Adenosylhomocysteinase; protein-substrate complex,	96.8
2o4c_A		380	Erythronate-4-phosphate dehydrogenase; erythronate	96.8
2dvm_A		439	Malic enzyme, 439AA long hypothetical malate oxido	96.75
1sc6_A		404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	96.75
3kb6_A		334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	96.73
1dxy_A		333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	96.71
1gdh_A		320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	96.69
1gpj_A		404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	96.68
2cuk_A		311	Glycerate dehydrogenase/glyoxylate reductase; stru	96.67
2j6i_A		364	Formate dehydrogenase; oxidoreductase, D-specific-	96.67
2dbq_A		334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	96.66
2nac_A		393	NAD-dependent formate dehydrogenase; oxidoreductas	96.66
3ba1_A		333	HPPR, hydroxyphenylpyruvate reductase; two domain	96.64
1j4a_A		333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	96.58
2gcg_A		330	Glyoxylate reductase/hydroxypyruvate reductase; NA	96.36
2w2k_A		348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	96.31
3nv9_A		487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	96.26
2hk9_A		275	Shikimate dehydrogenase; shikimate pathway, drug d	96.23
1ygy_A		529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	96.18
3ond_A		488	Adenosylhomocysteinase; plant protein, enzyme-subs	96.14
3don_A		277	Shikimate dehydrogenase; alpha-beta structure, ros	96.11
3phh_A		269	Shikimate dehydrogenase; shikimate pathway, helico	95.93
3oj0_A		144	Glutr, glutamyl-tRNA reductase; structural genomic	95.9
3ic5_A		118	Putative saccharopine dehydrogenase; structural ge	95.89
3u62_A		253	Shikimate dehydrogenase; shikimate pathway, oxidor	95.83
3jyo_A		283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	95.81
2egg_A		297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	95.75
3tnl_A		315	Shikimate dehydrogenase; structural genomics, cent	95.67
3fbt_A		282	Chorismate mutase and shikimate 5-dehydrogenase fu	95.59
1c1d_A		355	L-phenylalanine dehydrogenase; amino acid dehydrog	95.58
3o8q_A		281	Shikimate 5-dehydrogenase I alpha; structural geno	95.56
3tum_A		269	Shikimate dehydrogenase family protein; rossmann-f	95.47
2d0i_A		333	Dehydrogenase; structural genomics, NPPSFA, nation	95.41
3t4e_A		312	Quinate/shikimate dehydrogenase; structural genomi	95.33
2d5c_A		263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	95.15
3pwz_A		272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	95.14
1nyt_A		271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	94.88
1leh_A		364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	94.69
1p77_A		272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	94.62
1pj3_A		564	NAD-dependent malic enzyme, mitochondrial; oxidati	94.51
1gq2_A		555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	94.49
1o0s_A		605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	94.36
1nvt_A		287	Shikimate 5'-dehydrogenase; structural genomics, P	94.31
4b4u_A		303	Bifunctional protein fold; oxidoreductase; HET: NA	94.3
3aog_A		440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	93.66
1v9l_A		421	Glutamate dehydrogenase; protein-NAD complex, oxid	93.61
3l6d_A		306	Putative oxidoreductase; structural genomics, prot	93.56
3abi_A		365	Putative uncharacterized protein PH1688; L-lysine	93.24
1yqd_A		366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	93.24
2tmg_A		415	Protein (glutamate dehydrogenase); metabolic role,	93.19
4gbj_A		297	6-phosphogluconate dehydrogenase NAD-binding; stru	93.12
3pef_A		287	6-phosphogluconate dehydrogenase, NAD-binding; gam	93.02
2bma_A		470	Glutamate dehydrogenase (NADP+); malaria, drug des	92.97
3qha_A		296	Putative oxidoreductase; seattle structural genomi	92.91
1bgv_A		449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	92.56
4dll_A		320	2-hydroxy-3-oxopropionate reductase; structural ge	92.49
3doj_A		310	AT3G25530, dehydrogenase-like protein; gamma-hydro	92.46
3g0o_A		303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	92.3
3k92_A		424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	92.29
1npy_A		271	Hypothetical shikimate 5-dehydrogenase-like protei	92.16
1uuf_A		369	YAHK, zinc-type alcohol dehydrogenase-like protein	91.78
2i99_A		312	MU-crystallin homolog; thyroid hormine binding pro	91.07
3ggo_A		314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	90.71
3ew7_A		221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	90.48
3hdj_A		313	Probable ornithine cyclodeaminase; APC62486, borde	90.42
1e3i_A		376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	90.13
2h78_A		302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	90.11
2vns_A		215	Metalloreductase steap3; metal-binding, transmembr	90.01
2cf5_A		357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	89.94
4e21_A		358	6-phosphogluconate dehydrogenase (decarboxylating;	89.79
1cdo_A		374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	89.67
3kkj_A		336	Amine oxidase, flavin-containing; oxidoreductase,	89.53
3qvo_A		236	NMRA family protein; structural genomics, PSI-biol	89.4
3pdu_A		287	3-hydroxyisobutyrate dehydrogenase family protein;	89.26
3nx4_A		324	Putative oxidoreductase; csgid, structural genomic	89.24
1lu9_A		287	Methylene tetrahydromethanopterin dehydrogenase; a	89.18
4ezb_A		317	Uncharacterized conserved protein; structural geno	88.9
3qsg_A		312	NAD-binding phosphogluconate dehydrogenase-like P;	88.67
2cvz_A		289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	88.22
1vpd_A		299	Tartronate semialdehyde reductase; structural geno	88.12
4e12_A		283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	88.06
3cky_A		301	2-hydroxymethyl glutarate dehydrogenase; rossmann	87.93
4eye_A		342	Probable oxidoreductase; structural genomics, niai	87.93
2ahr_A		259	Putative pyrroline carboxylate reductase; pyrrolin	87.89
3d1l_A		266	Putative NADP oxidoreductase BF3122; structural ge	87.84
2g1u_A		155	Hypothetical protein TM1088A; structural genomics,	87.78
1piw_A		360	Hypothetical zinc-type alcohol dehydrogenase- like	87.72
2yjz_A		201	Metalloreductase steap4; oxidoreductase, metabolic	87.52
3dtt_A		245	NADP oxidoreductase; structural genomics, joint ce	87.28
2e1m_A		376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	87.24
2z2v_A		365	Hypothetical protein PH1688; L-lysine dehydrogenas	86.81
3e8x_A		236	Putative NAD-dependent epimerase/dehydratase; stru	86.8
4huj_A		220	Uncharacterized protein; PSI-biology, nysgrc, stru	86.58
3r6d_A		221	NAD-dependent epimerase/dehydratase; structural ge	86.45
3aoe_E		419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	86.37
2o23_A		265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	86.19
3tpc_A		257	Short chain alcohol dehydrogenase-related dehydro;	85.99
2uyy_A		316	N-PAC protein; long-chain dehydrogenase, cytokine;	85.95
3uko_A		378	Alcohol dehydrogenase class-3; alcohol dehydrogena	85.79
3obb_A		300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	85.78
3gvi_A		324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	85.74
1p0f_A		373	NADP-dependent alcohol dehydrogenase; ADH topology	85.73
3g79_A		478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	85.52
2hcy_A		347	Alcohol dehydrogenase 1; tetramer of asymmetric di	85.17
3h2s_A		224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	85.03
3fpf_A		298	Mtnas, putative uncharacterized protein; thermonic	85.01
2pv7_A		298	T-protein [includes: chorismate mutase (EC 5.4.99	84.39
3pi7_A		349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	84.27
3qwb_A		334	Probable quinone oxidoreductase; rossmann fold, qu	83.87
2zcu_A		286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	83.82
2yfq_A		421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	83.73
4b7c_A		336	Probable oxidoreductase; NADP cofactor, rossmann f	83.65
4fn4_A		254	Short chain dehydrogenase; NADH-binding, rossmann	83.64
4dup_A		353	Quinone oxidoreductase; PSI-biology, structural ge	83.63
4hb9_A		412	Similarities with probable monooxygenase; flavin,	83.5
4a7p_A		446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	83.34
1z82_A		335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	82.99
1x7d_A		350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	82.78
2iid_A		498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	82.72
3gqv_A		371	Enoyl reductase; medium-chain reductase (MDR super	82.64
3ged_A		247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	82.41
3dhn_A		227	NAD-dependent epimerase/dehydratase; reductase, PF	82.39
3ius_A		286	Uncharacterized conserved protein; APC63810, silic	81.75
3c24_A		286	Putative oxidoreductase; YP_511008.1, structural g	81.64
3mw9_A		501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	81.6
2gf2_A		296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	81.59
3pgx_A		280	Carveol dehydrogenase; structural genomics, seattl	81.39
3gg2_A		450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	81.16
1pg5_A		299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	81.14
3dqp_A		219	Oxidoreductase YLBE; alpha-beta protein., structur	80.98
1omo_A		322	Alanine dehydrogenase; two-domain, beta-sandwich-d	80.9
2ph5_A		480	Homospermidine synthase; alpha-beta protein, struc	80.88
1t2d_A		322	LDH-P, L-lactate dehydrogenase; ternary complex, o	80.77
1yb4_A		295	Tartronic semialdehyde reductase; structural genom	80.75
3ktd_A		341	Prephenate dehydrogenase; structural genomics, joi	80.69
4fcc_A		450	Glutamate dehydrogenase; protein complex, rossmann	80.62
2i6u_A		307	Otcase, ornithine carbamoyltransferase; X-RAY crys	80.62
1mv8_A		436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	80.54
2j8z_A		354	Quinone oxidoreductase; medium-chain dehydrogenase	80.43
4hp8_A		247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	80.36
3e48_A		289	Putative nucleoside-diphosphate-sugar epimerase; a	80.35
1y6j_A		318	L-lactate dehydrogenase; southeast collaboratory f	80.34
3two_A		348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	80.33
3l4b_C		218	TRKA K+ channel protien TM1088B; potassium channel	80.03
4b79_A		242	PA4098, probable short-chain dehydrogenase; oxidor	80.01
3dfz_A		223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	80.01

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*	Back alignment and structure

Probab=100.00  E-value=1.6e-76  Score=608.39  Aligned_cols=347  Identities=23%  Similarity=0.299  Sum_probs=290.6

Q ss_pred             CCCcEEEEeeccCCCCCcceecChHHHHHHHHcCCCCCCeeEEEEcCCCCCCCCchhhhhcCcEEccc-cc-c--ccE-E
Q 012946            2 LDNGVVGILAETSNKWERRAPLTPSHCSRLLLAGRQKSGVARILVQPSTKRIFNDAQYEEAGCEITSD-LS-E--CGL-I   76 (452)
Q Consensus         2 ~~~~~IGi~kE~~~~~ErRvaLtP~~v~~L~~~G~~~~~~~~V~VE~gag~~FsD~eY~~aGa~I~~~-~~-~--~di-I   76 (452)
                      |++|+||||||++ +||+||||||++|++|+++||      +|+||+|++++|+|++|++|||+|+++ +| +  ||+ |
T Consensus        22 m~~m~IGvpkE~k-~~E~RValtP~~V~~L~~~G~------~V~VE~gA~a~f~D~~Y~~AGA~I~~~~~~~~a~aDi~I   94 (394)
T 2qrj_A           22 MAAVTLHLRAETK-PLEARAALTPTTVKKLIAKGF------KIYVEDSPQSTFNINEYRQAGAIIVPAGSWKTAPRDRII   94 (394)
T ss_dssp             --CCEEEECCCCS-TTCCCCSSCHHHHHHHHHTTC------EEEEECCSSCSSCHHHHHHTTCEEECTTGGGGSCTTSEE
T ss_pred             CcceEEEEEcCCC-CCCceeccCHHHHHHHHhCCC------EEEEeCCCCCCCCHHHHHhCCcEEechhhhhcCCCCeEE
Confidence            3568999999999 599999999999999999995      999999999999999999999999975 44 3  886 9


Q ss_pred             EEecCCCc-ccccCCCceEEEecccCCCCCCHHHHHHHHHcCCeEEEeecccccCCCccccchhHHHHHHHHHHHHHHHH
Q 012946           77 LGIKKPKL-EMILPDRAYAFFSHTHKAQPENMALLDKILAQRVSLFDYELVEGNQGKRRLIAFGKFAGRAAIIDLLKGLG  155 (452)
Q Consensus        77 l~Vkep~~-~~l~~~~~~~~fs~~~~~q~~n~~ll~~l~~k~it~i~~E~i~~~~g~~~L~s~~~~AG~~avi~al~~~g  155 (452)
                      ||||||++ +++.+++++++|+|+|++|++|++++++|+++|+|+||||.|++++|+| |++||+||||+|+++|++.||
T Consensus        95 lkVkeP~~~~e~~~~~~~i~f~~~~~~q~~~~~l~~~l~~~~it~ia~E~v~~~~g~r-L~sf~~iAG~~av~~a~~~lg  173 (394)
T 2qrj_A           95 IGLKEMPETDTFPLVHEHIQFAHCYKDQAGWQNVLMRFIKGHGTLYDLEFLENDQGRR-VAAFGFYAGFAGAALGVRDWA  173 (394)
T ss_dssp             ECSSCCCTTCCSCCCSEEEECCCCSSCCTTHHHHHHHHHHHTCEEEEGGGCBCTTSCB-SCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCcHHhhccCCcEEEEechhhccccCHHHHHHHHHCCCeEEEeeccCcCCCCE-EeehhhHhHHHHHHHHHHHHH
Confidence            99999999 9998899999999999998889999999999999999999999999988 999999999999999999999


Q ss_pred             HHHhhcCCCCCcccccccccCccHHHHHHHHHHhhHHHHhcCCCCCCCCceEEEEcC-cHHHHHHHHHHhcCCC---EEe
Q 012946          156 QRYLNLGYSTPFLTLGAAYMYPSLAAAKAAIISVGEEIATEGLPSGICPLVFVFTGS-GHASIAAQELFKLLPH---TFV  231 (452)
Q Consensus       156 ~~~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~G~~~~i~p~kv~V~G~-G~vg~gAi~~a~~LGa---~vv  231 (452)
                      .+++..+. .+|   +....|.|..++++++++.   +..++. .+.+|+||+|||+ |+||++|+++|++|||   .| 
T Consensus       174 ~~~~g~~g-~~l---~~~~pm~s~~al~q~~~~~---l~~~~~-~g~~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V-  244 (394)
T 2qrj_A          174 FKQTHSDD-EDL---PAVSPYPNEKALVKDVTKD---YKEALA-TGARKPTVLIIGALGRCGSGAIDLLHKVGIPDANI-  244 (394)
T ss_dssp             HHHHSCTT-CCC---CCCCCCSSHHHHHHHHHHH---HHHHHT-TTCCCCCEEEETTTSHHHHHHHHHHHHTTCCGGGE-
T ss_pred             HhhcCCcc-ccC---CCccCccCHHHHHHHHHHH---Hhhhhc-cCCCCCeEEEEcCCCHHHHHHHHHHHhCCCCcCce-
Confidence            99876532 132   2333477877766666654   332111 2448999999999 9999999999999997   33 


Q ss_pred             CCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCCCCcccccccCcCCcCcchHhhhcCCCcEEEec
Q 012946          232 DPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSRAFDKNDYYEHPEQYNPIFHEKIAPYASAIINC  311 (452)
Q Consensus       232 ~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~e~y~~~f~~~~~~~~DIvIn~  311 (452)
                                                         ..+|+.++..|+ +|                  +.++++||||||
T Consensus       245 -----------------------------------~v~D~~~~~~g~-~~------------------~~i~~aDivIn~  270 (394)
T 2qrj_A          245 -----------------------------------LKWDIKETSRGG-PF------------------DEIPQADIFINC  270 (394)
T ss_dssp             -----------------------------------EEECHHHHTTCS-CC------------------THHHHSSEEEEC
T ss_pred             -----------------------------------EEeeccccccCC-ch------------------hhHhhCCEEEEC
Confidence                                               112332222221 22                  235589999999


Q ss_pred             cccCCCCCcccCHHHHHHh-hcCCCCeEEEEEeeecCCCCeeee---cccccCCCCEEEeCCCCCCCCCCCCCCCeEEEe
Q 012946          312 IYWEKQFPRLLSTQQLRDL-AQKGCPLVGISDLTCDMEGSIEIL---NQTTTIDSPFFRYDPKNDSYHHDMEGDGIICSV  387 (452)
Q Consensus       312 a~~~~~~P~Lit~e~l~~m-k~gs~~l~vIvDvs~D~gG~iE~~---~~~Tt~~~P~~~~~~~~~~~~~~~~~~gV~~~~  387 (452)
                      ++|..++|+|||+||+++| |||+    ||||||||+|||||++   +++||+++|+|.++..+        +++|+|||
T Consensus       271 vlig~~aP~Lvt~e~v~~m~k~gs----VIVDVA~D~GG~~et~~f~~~~Tt~~~P~~~~~g~~--------~~~V~~~~  338 (394)
T 2qrj_A          271 IYLSKPIAPFTNMEKLNNPNRRLR----TVVDVSADTTNPHNPIPIYTVATVFNKPTVLVPTTA--------GPKLSVIS  338 (394)
T ss_dssp             CCCCSSCCCSCCHHHHCCTTCCCC----EEEETTCCTTCTTCSSCSCCCCCBTTBCCEEECCSS--------SSCEEEEC
T ss_pred             cCcCCCCCcccCHHHHhcCcCCCe----EEEEEecCCCCCcCcccccccCCccCCCEEEECCCC--------CCCEEEEE
Confidence            9997799999999999999 9999    9999999999999973   29999999999987321        35699999


Q ss_pred             eCCcCCcchHHHHHHHHHHHHHHHHHhhcccccccCCHHHHhchhhcC
Q 012946          388 VDNLPTEFPKEASQHFGGLLSQFIGSLASVADIAKLPGNLRRACIAHG  435 (452)
Q Consensus       388 vdnLPs~lp~~AS~~fs~~l~~~l~~l~~~~~~~~~~~~l~~a~i~~~  435 (452)
                      |||||++||++||++||++++|||..|++.    ..+.++++|.+..+
T Consensus       339 v~nlP~~lPrtAS~~~sn~llp~l~~l~~~----~~~~v~~~A~~~~~  382 (394)
T 2qrj_A          339 IDHLPSLLPREASEFFSHDLLPSLELLPQR----KTAPVWVRAKKLFD  382 (394)
T ss_dssp             CTTGGGGSHHHHHHHHHHHHHHHHHTCTTT----TTCHHHHHHHHHHH
T ss_pred             eCChhhhhHHHHHHHHHHHHHHHHHHHhcc----CccHHHHHHHHHhh
Confidence            999999999999999999999999999876    45778888876644

PyMOL of 2qrj

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}	Back alignment and structure

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}	Back alignment and structure

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A	Back alignment and structure

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*	Back alignment and structure

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}	Back alignment and structure

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*	Back alignment and structure

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*	Back alignment and structure

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}	Back alignment and structure

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}	Back alignment and structure

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}	Back alignment and structure

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*	Back alignment and structure

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3	Back alignment and structure

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*	Back alignment and structure

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*	Back alignment and structure

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}	Back alignment and structure

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2	Back alignment and structure

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}	Back alignment and structure

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}	Back alignment and structure

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*	Back alignment and structure

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A	Back alignment and structure

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A	Back alignment and structure

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}	Back alignment and structure

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}	Back alignment and structure

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A	Back alignment and structure

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*	Back alignment and structure

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}	Back alignment and structure

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*	Back alignment and structure

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}	Back alignment and structure

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}	Back alignment and structure

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*	Back alignment and structure

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*	Back alignment and structure

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}	Back alignment and structure

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}	Back alignment and structure

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}	Back alignment and structure

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}	Back alignment and structure

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}	Back alignment and structure

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}	Back alignment and structure

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}	Back alignment and structure

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1	Back alignment and structure

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}	Back alignment and structure

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}	Back alignment and structure

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}	Back alignment and structure

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*	Back alignment and structure

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A	Back alignment and structure

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*	Back alignment and structure

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}	Back alignment and structure

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*	Back alignment and structure

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*	Back alignment and structure

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}	Back alignment and structure

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1	Back alignment and structure

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1	Back alignment and structure

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1	Back alignment and structure

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}	Back alignment and structure

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A	Back alignment and structure

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*	Back alignment and structure

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A	Back alignment and structure

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*	Back alignment and structure

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*	Back alignment and structure

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A	Back alignment and structure

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B	Back alignment and structure

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}	Back alignment and structure

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A	Back alignment and structure

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*	Back alignment and structure

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*	Back alignment and structure

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*	Back alignment and structure

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*	Back alignment and structure

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}	Back alignment and structure

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}	Back alignment and structure

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}	Back alignment and structure

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A	Back alignment and structure

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}	Back alignment and structure

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*	Back alignment and structure

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}	Back alignment and structure

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*	Back alignment and structure

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*	Back alignment and structure

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}	Back alignment and structure

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*	Back alignment and structure

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*	Back alignment and structure

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}	Back alignment and structure

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5	Back alignment and structure

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1	Back alignment and structure

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*	Back alignment and structure

>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*	Back alignment and structure

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A	Back alignment and structure

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*	Back alignment and structure

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5	Back alignment and structure

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*	Back alignment and structure

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A	Back alignment and structure

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1	Back alignment and structure

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}	Back alignment and structure

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}	Back alignment and structure

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*	Back alignment and structure

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A	Back alignment and structure

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}	Back alignment and structure

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}	Back alignment and structure

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}	Back alignment and structure

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}	Back alignment and structure

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A	Back alignment and structure

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}	Back alignment and structure

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}	Back alignment and structure

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}	Back alignment and structure

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A	Back alignment and structure

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5	Back alignment and structure

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1	Back alignment and structure

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}	Back alignment and structure

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*	Back alignment and structure

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}	Back alignment and structure

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}	Back alignment and structure

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*	Back alignment and structure

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*	Back alignment and structure

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*	Back alignment and structure

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}	Back alignment and structure

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1	Back alignment and structure

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}	Back alignment and structure

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}	Back alignment and structure

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}	Back alignment and structure

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*	Back alignment and structure

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*	Back alignment and structure

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}	Back alignment and structure

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}	Back alignment and structure

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*	Back alignment and structure

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6	Back alignment and structure

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*	Back alignment and structure

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}	Back alignment and structure

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}	Back alignment and structure

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A	Back alignment and structure

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}	Back alignment and structure

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*	Back alignment and structure

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A	Back alignment and structure

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}	Back alignment and structure

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}	Back alignment and structure

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}	Back alignment and structure

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}	Back alignment and structure

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}	Back alignment and structure

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*	Back alignment and structure

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}	Back alignment and structure

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*	Back alignment and structure

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}	Back alignment and structure

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}	Back alignment and structure

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}	Back alignment and structure

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*	Back alignment and structure

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*	Back alignment and structure

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*	Back alignment and structure

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}	Back alignment and structure

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}	Back alignment and structure

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}	Back alignment and structure

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*	Back alignment and structure

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6	Back alignment and structure

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}	Back alignment and structure

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*	Back alignment and structure

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*	Back alignment and structure

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}	Back alignment and structure

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*	Back alignment and structure

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}	Back alignment and structure

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}	Back alignment and structure

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}	Back alignment and structure

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}	Back alignment and structure

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}	Back alignment and structure

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*	Back alignment and structure

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*	Back alignment and structure

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*	Back alignment and structure

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*	Back alignment and structure

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}	Back alignment and structure

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}	Back alignment and structure

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*	Back alignment and structure

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*	Back alignment and structure

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0	Back alignment and structure

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}	Back alignment and structure

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*	Back alignment and structure

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}	Back alignment and structure

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A	Back alignment and structure

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}	Back alignment and structure

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*	Back alignment and structure

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}	Back alignment and structure

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}	Back alignment and structure

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E	Back alignment and structure

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A	Back alignment and structure

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*	Back alignment and structure

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*	Back alignment and structure

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}	Back alignment and structure

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}	Back alignment and structure

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1	Back alignment and structure

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}	Back alignment and structure

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}	Back alignment and structure

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}	Back alignment and structure

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		452
d1pjca2		193	c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogen	1e-08

>d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} Length = 193	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

 Score = 52.7 bits (126), Expect = 1e-08
 Identities = 30/165 (18%), Positives = 54/165 (32%), Gaps = 20/165 (12%)

Query: 7   VGILAETSNKWERRAPLTPSHCSRLLLAGRQKSGVARILVQ--PSTKRIFNDAQYEEAGC 64
           +G+  E  N+ E R  L+PS    L+ AG        + ++        F D  Y +AG 
Sbjct: 3   IGVPKEIKNQ-EFRVGLSPSSVRTLVEAG------HTVFIETQAGIGAGFADQDYVQAGA 55

Query: 65  EITSDLSECGLILGIKKPK------LEMILPDRAYAFFSHTHKAQPENMALLDKILAQRV 118
           ++     +      + K K       +++  D+    + H   A+     L+       +
Sbjct: 56  QVVPSAKDAWSREMVVKVKEPLPAEYDLMQKDQLLFTYLHLAAARELTEQLMRV----GL 111

Query: 119 SLFDYELVEGNQGKRRLI-AFGKFAGRAAIIDLLKGLGQRYLNLG 162
           +   YE VE       L+          A   L        + L 
Sbjct: 112 TAIAYETVELPNRSLPLLTPMSIIVPWTATQALNNSTLPYVVKLA 156

PyMOL of d1pjca2

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		452
d1pjca1		168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	100.0
d1l7da2		194	Nicotinamide nucleotide transhydrogenase dI compon	100.0
d1pjca2		193	L-alanine dehydrogenase {Phormidium lapideum [TaxI	100.0
d1l7da1		183	Nicotinamide nucleotide transhydrogenase dI compon	100.0
d1v8ba1		163	S-adenosylhomocystein hydrolase {Plasmodium falcip	97.8
d1li4a1		163	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.8
d1qp8a1		181	Putative formate dehydrogenase {Archaeon Pyrobacul	97.74
d1j4aa1		197	D-lactate dehydrogenase {Lactobacillus helveticus	97.57
d1gpja2		159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.47
d1mx3a1		193	Transcription corepressor CtbP {Human (Homo sapien	97.38
d1ygya1		184	Phosphoglycerate dehydrogenase {Mycobacterium tube	97.36
d1dxya1		199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	97.36
d1sc6a1		188	Phosphoglycerate dehydrogenase {Escherichia coli [	97.21
d2naca1		188	Formate dehydrogenase {Pseudomonas sp., strain 101	97.13
d1gdha1		191	D-glycerate dehydrogenase {Hyphomicrobium methylov	97.0
d1vi2a1		182	Putative shikimate dehydrogenase YdiB {Escherichia	96.71
d1nyta1		170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.66
d1luaa1		191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.25
d1c1da1		201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	95.6
d1vj0a2		182	Hypothetical protein TM0436 {Thermotoga maritima [	95.47
d1edza1		171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.44
d1p77a1		171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	95.23
d2iida1		370	L-aminoacid oxidase {Malayan pit viper (Calloselas	95.12
d1nvta1		177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	95.07
d1pj3a1		294	Mitochondrial NAD(P)-dependent malic enzyme {Human	94.99
d1v9la1		242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	94.68
d1npya1		167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	94.64
d2dw4a2		449	Lysine-specific histone demethylase 1, LSD1 {Human	94.56
d2jfga1		93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	94.41
d1gtea4		196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	94.24
d1b0aa1		166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.19
d1piwa2		168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.05
d1a4ia1		170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	93.91
d1xa0a2		176	B. subtilis YhfP homologue {Bacillus stearothermop	93.68
d1vpda2		161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	93.57
d1nhpa2		123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	93.52
d1hwxa1		293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	93.31
d1tt7a2		167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	93.25
d1uufa2		168	Hypothetical protein YahK {Escherichia coli [TaxId	93.12
d1bg6a2		184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	93.03
d1gq2a1		298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	92.73
d2f1ka2		165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	92.72
d1seza1		373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	92.56
d1ps9a3		179	2,4-dienoyl-CoA reductase, middle domain {Escheric	92.53
d1llda1		143	Lactate dehydrogenase {Bifidobacterium longum, str	92.52
d1vl6a1		222	Malate oxidoreductase (malic enzyme) {Thermotoga m	92.44
d3c96a1		288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	92.33
d1gesa2		116	Glutathione reductase {Escherichia coli [TaxId: 56	91.95
d1ebda2		117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	91.6
d1v59a2		122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	91.53
d1lqta2		239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	91.43
d1o0sa1		308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	91.4
d1leha1		230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	91.14
d2ivda1		347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	91.05
d2ahra2		152	Pyrroline-5-carboxylate reductase ProC {Streptococ	90.81
d1q1ra2		133	Putidaredoxin reductase {Pseudomonas putida [TaxId	90.77
d1h6va2		122	Mammalian thioredoxin reductase {Rat (Rattus norve	90.76
d1d7ya2		121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	90.7
d1b5qa1		347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	90.61
d1mlda1		144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	90.39
d3lada2		119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	90.36
d1xhca2		122	NADH oxidase /nitrite reductase {Pyrococcus furios	90.26
d1c0pa1		268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	90.15
d2voua1		265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	90.08
d1onfa2		117	Glutathione reductase {Plasmodium falciparum [TaxI	90.05
d2hjsa1		144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	89.56
d1llua2		166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	89.52
d1lvla2		115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	89.42
d1djqa3		233	Trimethylamine dehydrogenase, middle domain {Methy	89.3
d1e3ja2		170	Ketose reductase (sorbitol dehydrogenase) {Silverl	88.85
d3grsa2		125	Glutathione reductase {Human (Homo sapiens) [TaxId	88.76
d1yb1a_		244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	88.63
d2pv7a2		152	Prephenate dehydrogenase TyrA {Haemophilus influen	88.59
d1dxla2		123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	88.11
d1v3va2		182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	87.78
d1pjqa1		113	Siroheme synthase CysG, domain 1 {Salmonella typhi	87.46
d1gtea3		153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	87.43
d2bi7a1		314	UDP-galactopyranose mutase, N-terminal domain {Kle	87.35
d1hdoa_		205	Biliverdin IX beta reductase {Human (Homo sapiens)	87.34
d1ulsa_		242	beta-keto acyl carrier protein reductase {Thermus	87.26
d1o5ia_		234	beta-keto acyl carrier protein reductase {Thermoto	87.17
d1trba1		190	Thioredoxin reductase {Escherichia coli [TaxId: 56	87.11
d1vdca1		192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	86.99
d1d5ta1		336	Guanine nucleotide dissociation inhibitor, GDI {Co	86.71
d3cuma2		162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	86.7
d1cjca2		230	Adrenodoxin reductase of mitochondrial p450 system	86.23
d1vl8a_		251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	85.84
d1fmca_		255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	85.58
d1ez4a1		146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	85.39
d1bgva1		255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	85.38
d1ojta2		125	Dihydrolipoamide dehydrogenase {Neisseria meningit	85.37
d1mb4a1		147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	85.34
d2pgda2		176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	85.15
d1fl2a1		184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	84.59
d2bcgg1		297	Guanine nucleotide dissociation inhibitor, GDI {Ba	84.53
d2v5za1		383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	84.37
d1kyqa1		150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	84.16
d1yqga2		152	Pyrroline-5-carboxylate reductase ProC {Neisseria	84.14
d2a4ka1		241	beta-keto acyl carrier protein reductase {Thermus	84.12
d1cyda_		242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	83.93
d1gesa1		217	Glutathione reductase {Escherichia coli [TaxId: 56	83.92
d1h2ba2		172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	83.91
d1fcda1		186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	83.75
d1bdba_		276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	83.73
d1o8ca2		77	Hypothetical protein YhdH {Escherichia coli [TaxId	83.71
d1mo9a2		121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	83.35
d1lssa_		132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	83.34
d2fzwa2		176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	83.12
d1h5qa_		260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	83.1
d1hdca_		254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	82.95
d1pr9a_		244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	82.93
d1ydea1		250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	82.77
d1o89a2		177	Hypothetical protein YhdH {Escherichia coli [TaxId	82.66
d1i36a2		152	Conserved hypothetical protein MTH1747 {Archaeon M	82.64
d1kifa1		246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	82.61
d1ebda1		223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	82.16
d1xg5a_		257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	82.14
d2hmva1		134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	82.14
d1m6ia2		137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	81.99
d1zema1		260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	81.78
d1d7ya1		183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	81.63
d1yb5a2		174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	81.45
d1v59a1		233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	81.45
d1k2wa_		256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	81.44
d1nffa_		244	Putative oxidoreductase Rv2002 {Mycobacterium tube	81.35
d1dxla1		221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	81.24
d1l7da2		194	Nicotinamide nucleotide transhydrogenase dI compon	81.15
d1gtma1		239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	80.97
d2ag5a1		245	Dehydrogenase/reductase SDR family member 6, DHRS6	80.79
d1jqba2		174	Bacterial secondary alcohol dehydrogenase {Clostri	80.72
d1pvva2		163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	80.61
d1rjwa2		168	Alcohol dehydrogenase {Bacillus stearothermophilus	80.57
d1gega_		255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	80.52
d1nhpa1		198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	80.44
d1lvla1		220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	80.26
d1w4xa1		298	Phenylacetone monooxygenase {Thermobifida fusca [T	80.2
d1obba1		171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	80.11

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=100.00  E-value=1.6e-40  Score=301.88  Aligned_cols=163  Identities=23%  Similarity=0.332  Sum_probs=135.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCcccccccccCccHHHHHHHHHHhhHHHHhcCCCCCCCCceEEEEcCcHHHHHHHH
Q 012946          142 AGRAAIIDLLKGLGQRYLNLGYSTPFLTLGAAYMYPSLAAAKAAIISVGEEIATEGLPSGICPLVFVFTGSGHASIAAQE  221 (452)
Q Consensus       142 AG~~avi~al~~~g~~~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~G~~~~i~p~kv~V~G~G~vg~gAi~  221 (452)
                      |||.+++     +|+++|.+.++                         |++++.+|+| +++|++|+|+|+|+||++|++
T Consensus         1 AG~~av~-----~ga~~L~~~~g-------------------------G~G~Llgg~~-gv~pa~V~ViGaGvaG~~A~~   49 (168)
T d1pjca1           1 AGRLSVQ-----FGARFLERQQG-------------------------GRGVLLGGVP-GVKPGKVVILGGGVVGTEAAK   49 (168)
T ss_dssp             HHHHHHH-----HHHHHTSGGGT-------------------------SCCCCTTCBT-TBCCCEEEEECCSHHHHHHHH
T ss_pred             CcHHHHH-----HHHHHhhhhcC-------------------------CcEEEecCCC-CCCCcEEEEECCChHHHHHHH
Confidence            8999999     58888876554                         6778888885 799999999999999999999


Q ss_pred             HHhcCCCEE----eCCCChhhHHhhhCCCCCccccCCCCceeEEEeeeeecccccccCCCCCCCcccccccCcCCcCcch
Q 012946          222 LFKLLPHTF----VDPSRLPELFEKAGDSSQSTCSSSTKRVFQVYGCVVTSENMVEPKDSSRAFDKNDYYEHPEQYNPIF  297 (452)
Q Consensus       222 ~a~~LGa~v----v~~~~l~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~e~y~~~f  297 (452)
                      +|++|||+|    +++++++++...           ++.+...                         .+.+++     .
T Consensus        50 ~A~~lGA~V~~~D~~~~~l~~l~~~-----------~~~~~~~-------------------------~~~~~~-----~   88 (168)
T d1pjca1          50 MAVGLGAQVQIFDINVERLSYLETL-----------FGSRVEL-------------------------LYSNSA-----E   88 (168)
T ss_dssp             HHHHTTCEEEEEESCHHHHHHHHHH-----------HGGGSEE-------------------------EECCHH-----H
T ss_pred             HHhhCCCEEEEEeCcHHHHHHHHHh-----------hccccee-------------------------ehhhhh-----h
Confidence            999999988    455556666622           1222111                         112222     2


Q ss_pred             HhhhcCCCcEEEeccccCC-CCCcccCHHHHHHhhcCCCCeEEEEEeeecCCCCeeeecccccCCCCEEEeCCCCCCCCC
Q 012946          298 HEKIAPYASAIINCIYWEK-QFPRLLSTQQLRDLAQKGCPLVGISDLTCDMEGSIEILNQTTTIDSPFFRYDPKNDSYHH  376 (452)
Q Consensus       298 ~~~~~~~~DIvIn~a~~~~-~~P~Lit~e~l~~mk~gs~~l~vIvDvs~D~gG~iE~~~~~Tt~~~P~~~~~~~~~~~~~  376 (452)
                      +++.++++||||+|++||+ ++|+|||++||++|||||    ||||||||+|||||+ ++|||+++|+|.++        
T Consensus        89 l~~~~~~aDivI~aalipG~~aP~lIt~~mv~~Mk~GS----VIVDvaidqGG~~Et-s~ptt~~~p~~~~~--------  155 (168)
T d1pjca1          89 IETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGS----VIVDVAVDQGGCVET-LHPTSHTQPTYEVF--------  155 (168)
T ss_dssp             HHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTC----EEEETTCTTCCSBTT-CCCCCSSSCEEEET--------
T ss_pred             HHHhhccCcEEEEeeecCCcccCeeecHHHHhhcCCCc----EEEEeecCCCCcccc-CCCCcccCCeEEEC--------
Confidence            3778899999999999995 999999999999999999    999999999999999 79999999999975        


Q ss_pred             CCCCCCeEEEeeCCcCCc
Q 012946          377 DMEGDGIICSVVDNLPTE  394 (452)
Q Consensus       377 ~~~~~gV~~~~vdnLPs~  394 (452)
                           ||+|||++|||+.
T Consensus       156 -----gV~~y~v~N~Pga  168 (168)
T d1pjca1         156 -----GVVHYGVPNMPGA  168 (168)
T ss_dssp             -----TEEEECCSCGGGG
T ss_pred             -----CEEEEecCCCCCC
Confidence                 9999999999973

PyMOL of d1pjca1

>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}	Back information, alignment and structure

>d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}	Back information, alignment and structure

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}	Back information, alignment and structure

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}	Back information, alignment and structure

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}	Back information, alignment and structure

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}	Back information, alignment and structure

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}	Back information, alignment and structure

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}	Back information, alignment and structure

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}	Back information, alignment and structure

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}	Back information, alignment and structure

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}	Back information, alignment and structure

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}	Back information, alignment and structure

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}	Back information, alignment and structure

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}	Back information, alignment and structure

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}	Back information, alignment and structure

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}	Back information, alignment and structure

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}	Back information, alignment and structure

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}	Back information, alignment and structure

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}	Back information, alignment and structure

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}	Back information, alignment and structure

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}	Back information, alignment and structure

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}	Back information, alignment and structure

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}	Back information, alignment and structure

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}	Back information, alignment and structure

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}	Back information, alignment and structure

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}	Back information, alignment and structure

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}	Back information, alignment and structure

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}	Back information, alignment and structure

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}	Back information, alignment and structure

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}	Back information, alignment and structure

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}	Back information, alignment and structure

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}	Back information, alignment and structure

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}	Back information, alignment and structure

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}	Back information, alignment and structure

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}	Back information, alignment and structure

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}	Back information, alignment and structure

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}	Back information, alignment and structure

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}	Back information, alignment and structure

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}	Back information, alignment and structure

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}	Back information, alignment and structure

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}	Back information, alignment and structure

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}	Back information, alignment and structure

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}	Back information, alignment and structure

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}	Back information, alignment and structure

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}	Back information, alignment and structure

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}	Back information, alignment and structure

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}	Back information, alignment and structure

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}	Back information, alignment and structure

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}	Back information, alignment and structure

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}	Back information, alignment and structure

>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}	Back information, alignment and structure

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}	Back information, alignment and structure

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}	Back information, alignment and structure

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}	Back information, alignment and structure

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure