Citrus Sinensis ID: 012948

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450--
MSANTDLDNTTSPLLEAGGDDDHGEEEATSSRRRWWKRVLDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSDADASELMAQGWQEDVVGSTWLCGLIWQHSISLACQLQQFLDLS
cccccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccc
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHcccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHccEEcccccccccHHEEEEEEEEHHHHHHHHHHHHHHHHHEEccc
msantdldnttsplleaggdddhgeeeaTSSRRRWWKRVLDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLcgqgfgakHYRMLGIYLQASWITSLFFSIIISFLWIYTEPIlillhqdpsiSKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFehtwegfsfeSFSFILTILKLALPSAAMVCLEYWAFEILVFLAglmpnselTTSLIAMCVNTESVAYMITYGLSAAASTrvsnelgagnpdqakNAMAVTVKLSVLLALVVVLALGfghniwagffsnsPEIIKEFASLTPLLALSITLDSVQGVLSDADASELMAQGWQEDVVGSTWLCGLIWQHSISLACQLQQFLDLS
msantdldnttsplleaggdddhgeeeatssrrrWWKRVLDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSDADASELMAQGWQEDVVGSTWLCGLIWQHSISLACQLQQFLDLS
MSANTDLDNTTSPLLEAggdddhgeeeATSSRRRWWKRVLDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQAswitslffsiiisflwiYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMavtvklsvllalvvvlalGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSDADASELMAQGWQEDVVGSTWLCGLIWQHSISLACQLQQFLDLS
*********************************RWWKRVLDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAAST***************NAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSDADASELMAQGWQEDVVGSTWLCGLIWQHSISLACQLQQFL***
**********************************WWKRVLDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSDADASELMAQGWQEDVVGSTWLCGLIWQHSISLACQLQQFLDLS
********NTTSPLLEAGG**************RWWKRVLDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSDADASELMAQGWQEDVVGSTWLCGLIWQHSISLACQLQQFLDLS
*******************************RRRWWKRVLDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSDADASELMAQGWQEDVVGSTWLCGLIWQHSISLACQLQQFLDLS
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MSANTDLDNTTSPLLEAGGDDDHGEEEATSSRRRWWKRVLDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSDADASELMAQGWQEDVVGSTWLCGLIWQHSISLACQLQQFLDLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query452 2.2.26 [Sep-21-2011]
Q9LUH2477 MATE efflux family protei yes no 0.902 0.855 0.642 1e-150
Q9LUH3469 MATE efflux family protei no no 0.882 0.850 0.642 1e-145
Q9SIA5476 MATE efflux family protei no no 0.867 0.823 0.406 2e-74
Q9SIA1477 MATE efflux family protei no no 0.873 0.828 0.394 2e-70
Q8RWF5483 MATE efflux family protei no no 0.823 0.770 0.397 2e-69
Q9SIA4476 MATE efflux family protei no no 0.871 0.827 0.391 2e-69
Q9SIA3476 MATE efflux family protei no no 0.858 0.815 0.384 5e-69
Q8GXM8476 MATE efflux family protei no no 0.867 0.823 0.373 3e-68
Q9LYT3507 Protein TRANSPARENT TESTA no no 0.904 0.806 0.324 1e-53
Q9USK3539 Uncharacterized transport yes no 0.871 0.730 0.314 2e-52
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function desciption
 Score =  530 bits (1366), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 268/417 (64%), Positives = 326/417 (78%), Gaps = 9/417 (2%)

Query: 10  TTSPLLE--AGGDDDHGEEEATSSRRRWWKRVLDLEEAKNQVVFSLPMILANVFYYAIPL 67
           T+SPLL+   GG+D+ G    +S+     ++V+D+EEAK Q+++SLPMIL NVFYY IP+
Sbjct: 6   TSSPLLDDHVGGEDERGRRSRSSTLV---QKVIDVEEAKAQMIYSLPMILTNVFYYCIPI 62

Query: 68  VSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQ 127
            SVM A HLGQLELAGATLANSWATV+GFAFM+GLSG+LETLCGQGFGAK YRMLG++LQ
Sbjct: 63  TSVMFASHLGQLELAGATLANSWATVSGFAFMVGLSGSLETLCGQGFGAKRYRMLGVHLQ 122

Query: 128 ASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRF 187
           +S I SL FSI+I+  W +TE I  LL QDPSISKQAALYMKY  PGL+AYG +QNILRF
Sbjct: 123 SSCIVSLVFSILITIFWFFTESIFGLLRQDPSISKQAALYMKYQAPGLLAYGFLQNILRF 182

Query: 188 LQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLC 247
            QTQSI+ PL+ FS +P+ I+   AY  VY+  LGF GA +A S+SLWI+ L L TYV+C
Sbjct: 183 CQTQSIIAPLVIFSFVPLVINIATAYVLVYVAGLGFIGAPIATSISLWIAFLSLGTYVMC 242

Query: 248 AKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLI 307
           ++KF+ TW GFS ESF +I+  L L+LPSAAMVCLEYWAFEILVFLAG+MPN E+ TSL+
Sbjct: 243 SEKFKETWTGFSLESFRYIVINLTLSLPSAAMVCLEYWAFEILVFLAGVMPNPEINTSLV 302

Query: 308 AMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALVVVLALG 367
           A+CVNTE+++YM+TYGLSAAASTRVSNELGAGN   AK A +V+VKLS++LAL VV+ L 
Sbjct: 303 AICVNTEAISYMLTYGLSAAASTRVSNELGAGNVKGAKKATSVSVKLSLVLALGVVIVLL 362

Query: 368 FGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSDADASELMAQGWQEDV 424
            GH+ W G FS+S  I +EFASL   LA SITLDS+QGVLS          GWQ  V
Sbjct: 363 VGHDGWVGLFSDSYVIKEEFASLRFFLAASITLDSIQGVLSGVA----RGCGWQRLV 415
Required for protection of the roots from inhibitory compounds. When expressed in an heterologous system, confers resistance to tetramethylammonium chloride.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function description
>sp|Q9USK3|YJ2D_SCHPO Uncharacterized transporter C4B3.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4B3.13 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query452
224114908485 predicted protein [Populus trichocarpa] 0.918 0.855 0.736 1e-166
225461494487 PREDICTED: MATE efflux family protein AL 0.909 0.843 0.731 1e-162
255574668484 TRANSPARENT TESTA 12 protein, putative [ 0.915 0.855 0.670 1e-156
147858860 1134 hypothetical protein VITISV_039558 [Viti 0.873 0.348 0.693 1e-150
297835374476 hypothetical protein ARALYDRAFT_479865 [ 0.900 0.855 0.642 1e-149
18403810477 mate efflux domain-containing protein [A 0.902 0.855 0.642 1e-148
302142981438 unnamed protein product [Vitis vinifera] 0.811 0.837 0.746 1e-144
15229468469 mate efflux domain-containing protein [A 0.882 0.850 0.642 1e-143
297835372469 mate efflux family protein [Arabidopsis 0.882 0.850 0.645 1e-143
356549709491 PREDICTED: MATE efflux family protein AL 0.920 0.847 0.667 1e-143
>gi|224114908|ref|XP_002316890.1| predicted protein [Populus trichocarpa] gi|222859955|gb|EEE97502.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 313/425 (73%), Positives = 352/425 (82%), Gaps = 10/425 (2%)

Query: 1   MSANTDLDNTTSPLLEAGGDDDHGEEEATSSRRRWWKRVLDLEEAKNQVVFSLPMILANV 60
           M +NT  +   +PLLE     +   EE  + R RW K+VLD+EEAKNQ++FSLPMIL NV
Sbjct: 1   MLSNTSFE--AAPLLE---RSNSSVEEGENKRLRW-KKVLDVEEAKNQILFSLPMILTNV 54

Query: 61  FYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYR 120
           FYY I LVSVM AGHLG+LELAGATLANSWATVTGFAFM+GLSGALETLCGQGFGAK YR
Sbjct: 55  FYYLITLVSVMFAGHLGELELAGATLANSWATVTGFAFMVGLSGALETLCGQGFGAKMYR 114

Query: 121 MLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGV 180
           MLGIYLQAS I S  F I IS +W YTEPIL+LLHQD  +S  AALYMKYLIPGL AYG+
Sbjct: 115 MLGIYLQASCIISFIFCITISVIWFYTEPILLLLHQDAHVSMTAALYMKYLIPGLFAYGI 174

Query: 181 IQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLM 240
           +QNILRFLQTQS+V+P + FS +P+ IH GIAYA V+ T+LGFKGA LAAS+SLWIS LM
Sbjct: 175 MQNILRFLQTQSVVMPPVVFSLVPLCIHIGIAYALVHYTALGFKGAPLAASISLWISFLM 234

Query: 241 LVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNS 300
           L  YV+CAKKFEHTW GFSFESF +IL  LKLALPSAAMVCLEYWAFEILVFLAGLMP+S
Sbjct: 235 LAIYVICAKKFEHTWAGFSFESFHYILHDLKLALPSAAMVCLEYWAFEILVFLAGLMPSS 294

Query: 301 ELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLAL 360
           E++TSLIA+CVNTE+VAYM+TYGLSAAASTRVSNELG GNP++AKNAMAVT+KLSVLLAL
Sbjct: 295 EISTSLIAICVNTETVAYMLTYGLSAAASTRVSNELGEGNPERAKNAMAVTLKLSVLLAL 354

Query: 361 VVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSDADASELMAQGW 420
           +VVLAL FGHNIWAG FS+SP I KEFAS+ P LA+SITLDSVQGV S          GW
Sbjct: 355 LVVLALAFGHNIWAGLFSSSPTIAKEFASMAPFLAISITLDSVQGVFSGVA----RGCGW 410

Query: 421 QEDVV 425
           Q   V
Sbjct: 411 QHLAV 415

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225461494|ref|XP_002282547.1| PREDICTED: MATE efflux family protein ALF5 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255574668|ref|XP_002528243.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223532329|gb|EEF34128.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147858860|emb|CAN78689.1| hypothetical protein VITISV_039558 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297835374|ref|XP_002885569.1| hypothetical protein ARALYDRAFT_479865 [Arabidopsis lyrata subsp. lyrata] gi|297331409|gb|EFH61828.1| hypothetical protein ARALYDRAFT_479865 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18403810|ref|NP_566730.1| mate efflux domain-containing protein [Arabidopsis thaliana] gi|75274226|sp|Q9LUH2.1|ALF5_ARATH RecName: Full=MATE efflux family protein ALF5; AltName: Full=Protein ABERRANT LATERAL ROOT FORMATION 5; AltName: Full=Protein DTX19 gi|13384114|gb|AAK21273.1|AF337954_1 aberrant lateral root formation 5 [Arabidopsis thaliana] gi|9294512|dbj|BAB02774.1| unnamed protein product [Arabidopsis thaliana] gi|17064870|gb|AAL32589.1| Unknown protein [Arabidopsis thaliana] gi|332643256|gb|AEE76777.1| mate efflux domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|302142981|emb|CBI20276.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|15229468|ref|NP_188997.1| mate efflux domain-containing protein [Arabidopsis thaliana] gi|75274227|sp|Q9LUH3.1|LAL5_ARATH RecName: Full=MATE efflux family protein LAL5; AltName: Full=Protein DTX18; AltName: Full=Protein LIKE ALF5 gi|9294511|dbj|BAB02773.1| unnamed protein product [Arabidopsis thaliana] gi|17979043|gb|AAL49789.1| unknown protein [Arabidopsis thaliana] gi|20465841|gb|AAM20025.1| unknown protein [Arabidopsis thaliana] gi|332643255|gb|AEE76776.1| mate efflux domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297835372|ref|XP_002885568.1| mate efflux family protein [Arabidopsis lyrata subsp. lyrata] gi|297331408|gb|EFH61827.1| mate efflux family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356549709|ref|XP_003543234.1| PREDICTED: MATE efflux family protein ALF5-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query452
TAIR|locus:2088020477 ALF5 "AT3G23560" [Arabidopsis 0.900 0.853 0.592 5.8e-121
TAIR|locus:2088010469 AT3G23550 "AT3G23550" [Arabido 0.880 0.848 0.592 4.7e-119
TAIR|locus:2156737486 AT5G52450 "AT5G52450" [Arabido 0.856 0.796 0.412 1.1e-76
TAIR|locus:2027834476 AT1G73700 "AT1G73700" [Arabido 0.831 0.789 0.423 9.3e-75
TAIR|locus:2040839480 AT2G34360 "AT2G34360" [Arabido 0.816 0.768 0.393 1e-68
TAIR|locus:2037858481 AT1G15170 "AT1G15170" [Arabido 0.889 0.835 0.372 2.7e-68
TAIR|locus:2050190476 DTX1 "AT2G04040" [Arabidopsis 0.862 0.819 0.392 5.6e-68
TAIR|locus:2037723487 AT1G15150 "AT1G15150" [Arabido 0.907 0.841 0.353 8.2e-67
TAIR|locus:2050180476 AT2G04050 "AT2G04050" [Arabido 0.845 0.802 0.383 1.3e-66
TAIR|locus:2037868482 AT1G15180 "AT1G15180" [Arabido 0.907 0.850 0.348 1.8e-64
TAIR|locus:2088020 ALF5 "AT3G23560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1190 (424.0 bits), Expect = 5.8e-121, P = 5.8e-121
 Identities = 244/412 (59%), Positives = 290/412 (70%)

Query:    10 TTSPLLEAXXXXXXXXXXATSSRRRWWKRVLDLEEAKNQVVFSLPMILANVFYYAIPLVS 69
             T+SPLL+            + S     K V+D+EEAK Q+++SLPMIL NVFYY IP+ S
Sbjct:     6 TSSPLLDDHVGGEDERGRRSRSSTLVQK-VIDVEEAKAQMIYSLPMILTNVFYYCIPITS 64

Query:    70 VMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQAX 129
             VM A HLGQLELAGATLANSWATV+GFAFM+GLSG+LETLCGQGFGAK YRMLG++LQ+ 
Sbjct:    65 VMFASHLGQLELAGATLANSWATVSGFAFMVGLSGSLETLCGQGFGAKRYRMLGVHLQSS 124

Query:   130 XXXXXXXXXXXXXXXXYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQ 189
                             +TE I  LL QDPSISKQAALYMKY  PGL+AYG +QNILRF Q
Sbjct:   125 CIVSLVFSILITIFWFFTESIFGLLRQDPSISKQAALYMKYQAPGLLAYGFLQNILRFCQ 184

Query:   190 TQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAK 249
             TQSI+ PL+ FS +P+ I+   AY  VY+  LGF GA +A S+SLWI+ L L TYV+C++
Sbjct:   185 TQSIIAPLVIFSFVPLVINIATAYVLVYVAGLGFIGAPIATSISLWIAFLSLGTYVMCSE 244

Query:   250 KFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAM 309
             KF+ TW GFS ESF +I+  L L+LPSAAMVCLEYWAFEILVFLAG+MPN E+ TSL+A+
Sbjct:   245 KFKETWTGFSLESFRYIVINLTLSLPSAAMVCLEYWAFEILVFLAGVMPNPEINTSLVAI 304

Query:   310 CVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMXXXXXXXXXXXXXXXXXXGFG 369
             CVNTE+++YM+TYGLSAAASTRVSNELGAGN   AK A                     G
Sbjct:   305 CVNTEAISYMLTYGLSAAASTRVSNELGAGNVKGAKKATSVSVKLSLVLALGVVIVLLVG 364

Query:   370 HNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSDADASELMAQGWQ 421
             H+ W G FS+S  I +EFASL   LA SITLDS+QGVLS          GWQ
Sbjct:   365 HDGWVGLFSDSYVIKEEFASLRFFLAASITLDSIQGVLSGV----ARGCGWQ 412
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009636 "response to toxic substance" evidence=ISS
TAIR|locus:2088010 AT3G23550 "AT3G23550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156737 AT5G52450 "AT5G52450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027834 AT1G73700 "AT1G73700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040839 AT2G34360 "AT2G34360" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037858 AT1G15170 "AT1G15170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050190 DTX1 "AT2G04040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037723 AT1G15150 "AT1G15150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050180 AT2G04050 "AT2G04050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037868 AT1G15180 "AT1G15180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LUH2ALF5_ARATHNo assigned EC number0.64260.90260.8553yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query452
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-133
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 2e-57
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 8e-49
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 1e-42
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 2e-31
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 2e-31
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 4e-27
pfam01554161 pfam01554, MatE, MatE 4e-27
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 1e-26
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 3e-24
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 2e-21
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 1e-19
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 2e-16
pfam01554161 pfam01554, MatE, MatE 5e-16
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 8e-16
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 3e-14
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 1e-13
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 7e-13
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 1e-09
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 2e-09
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 2e-09
cd13149434 cd13149, MATE_like_2, Uncharacterized subfamily of 8e-09
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 1e-07
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 2e-07
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 5e-07
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 6e-07
cd13147441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 3e-05
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 2e-04
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 3e-04
cd13141443 cd13141, MATE_like_13, Uncharacterized subfamily o 6e-04
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 0.001
cd13134 438 cd13134, MATE_like_8, Uncharacterized subfamily of 0.002
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  391 bits (1007), Expect = e-133
 Identities = 175/394 (44%), Positives = 263/394 (66%), Gaps = 9/394 (2%)

Query: 44  EAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLS 103
           EAK  +  + P++L ++  Y++ +VSV+  GHLG+LELA A+LA+S+A VTGF+ ++GL+
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 104 GALETLCGQGFGAKHYRMLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQ 163
            AL+TLCGQ FGAK+Y+++G+YLQ + +  L   + IS LW+ TEPIL+LL QDP I++ 
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 164 AALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGF 223
           A  Y+++LIPGL AY + + + R+LQ Q IV+PL++ S + + ++  + Y  V++  LGF
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 224 KGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLE 283
            GA+LA S+S W+ +++L+ Y+  +K  + TW GFS E+F      LKLA+PSA M+CLE
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 284 YWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQ 343
           +WAFEILV LAGL+P   +  +  ++C+ T S+ YMI  G+S AAS RV NELGAGNP +
Sbjct: 241 WWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPKR 299

Query: 344 AKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSV 403
           AK A  V + LS+++ +VV + L    ++WA  F++  E+I   A L P+LAL    D +
Sbjct: 300 AKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFDGL 359

Query: 404 QGVLSDADASELMAQGWQEDV----VGSTWLCGL 433
           Q VLS      L   G Q+      + + +L GL
Sbjct: 360 QAVLS----GVLRGCGRQKLGAYVNLVAYYLIGL 389

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 452
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.96
COG0728 518 MviN Uncharacterized membrane protein, putative vi 99.94
PRK10459 492 colanic acid exporter; Provisional 99.94
COG2244480 RfbX Membrane protein involved in the export of O- 99.92
PRK00187464 multidrug efflux protein NorA; Provisional 99.91
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 99.9
PRK10189478 MATE family multidrug exporter; Provisional 99.89
PRK01766456 multidrug efflux protein; Reviewed 99.89
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 99.88
TIGR01695502 mviN integral membrane protein MviN. This model re 99.85
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 99.8
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.79
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.79
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.79
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.76
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.74
PRK10459492 colanic acid exporter; Provisional 99.74
PRK15099416 O-antigen translocase; Provisional 99.74
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.7
COG2244480 RfbX Membrane protein involved in the export of O- 99.65
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.64
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.46
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 99.1
KOG1347473 consensus Uncharacterized membrane protein, predic 98.98
PF04506 549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.76
KOG2864 530 consensus Nuclear division RFT1 protein [Cell cycl 98.6
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.59
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.52
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.27
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 97.6
COG4267467 Predicted membrane protein [Function unknown] 97.31
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 96.74
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 96.68
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=4.1e-52  Score=408.22  Aligned_cols=393  Identities=24%  Similarity=0.341  Sum_probs=375.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccchhhHH
Q 012948           43 EEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRML  122 (452)
Q Consensus        43 ~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~  122 (452)
                      +..|+++++++|++++++...+++.+|+.++||+|++++++.+++.++..+. ..+..|++.+..+.+||++|+||++++
T Consensus        14 ~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~~~   92 (455)
T COG0534          14 KILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRKKA   92 (455)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchHHH
Confidence            4899999999999999999999999999999999999999999999999999 999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 012948          123 GIYLQASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFS  201 (452)
Q Consensus       123 ~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~  201 (452)
                      ++..++++.++++++++..++ +.+.++++.+++.++|+.+.+.+|+++..++.++..+.....+.+|+.||+|.+++.+
T Consensus        93 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~~  172 (455)
T COG0534          93 KRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYIL  172 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHH
Confidence            999999999999999888877 9999999999999888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHhhcc-cc-cccchhHHHHHHHHHHHHHHHHHHHHhccc-ccccccCCChhhHHHHHHHHHHHhHHHH
Q 012948          202 ALPMAIHFGIAYAFVYL-TS-LGFKGASLAASVSLWISMLMLVTYVLCAKK-FEHTWEGFSFESFSFILTILKLALPSAA  278 (452)
Q Consensus       202 ~~~~~v~i~l~~~li~~-~~-~gi~G~~~a~~i~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~p~~~  278 (452)
                      ++++++|+++|++|+++ ++ +|+.|+++||++++.+.+++.+++++++++ ......+..+.+++.+|++++.|+|.++
T Consensus       173 ~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~~  252 (455)
T COG0534         173 LLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFL  252 (455)
T ss_pred             HHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHHH
Confidence            99999999999999998 46 999999999999999999999999987765 2333334445668999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 012948          279 MVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLL  358 (452)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~  358 (452)
                      ++..+...+...+.+++++|  ++.+|+|+++.++.++.++++.|++++..|++++++|+||+|++++..+.+.++++.+
T Consensus       253 ~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~  330 (455)
T COG0534         253 ESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLI  330 (455)
T ss_pred             HHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998  8899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhcccccccccccchh----hhhhhhccch
Q 012948          359 ALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSDADASELMAQGWQEDV----VGSTWLCGLI  434 (452)
Q Consensus       359 ~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~----~~~~~~~~i~  434 (452)
                      ++..+++++++++++.++|++|+|+.+.+..++++..+..++++.+.+..+++    ||.||+|.+    ++++|.+++|
T Consensus       331 ~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~l----rg~g~~~~~~~~~~~~~~~~~lp  406 (455)
T COG0534         331 ALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVL----RGAGDAKIPFIISLLSYWGFRLP  406 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCCcHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999    999999999    8889999999


Q ss_pred             HHHHHHHH
Q 012948          435 WQHSISLA  442 (452)
Q Consensus       435 ~~~~l~~~  442 (452)
                      +++.+.+.
T Consensus       407 ~~~~l~~~  414 (455)
T COG0534         407 LAYLLGFF  414 (455)
T ss_pred             HHHHHhhh
Confidence            99999886

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query452
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 2e-12
4huk_A459 Mate Transporter Norm-ng In Complex With Tpp And Mo 4e-05
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/312 (21%), Positives = 138/312 (44%), Gaps = 11/312 (3%)
Query: 43  EEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANS-WATVTGFAFMIG 101
           +EA N +  + P+++A+V    +  V  + AG +  +++A  ++A S W  +    F +G
Sbjct: 9   KEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIW--LPSILFGVG 66
Query: 102 LSGALETLCGQGFGAKHYRMLGIYLQAXXXXXXXXXXXXXXXXXYTEPILILLHQDPSIS 161
           L  AL  +  Q  GA     +   +                    T+ I+  +  + +++
Sbjct: 67  LLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMA 126
Query: 162 KQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVY---- 217
            +   YM  +I  + AY + Q +  F    S+  P +    + + ++  + + FVY    
Sbjct: 127 TKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFG 186
Query: 218 LTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEH--TWEGFSFESFSFILTILKLALP 275
              LG  G  +A ++  WI +L+L+ Y++ +K+  H   +E F       ++ + +L  P
Sbjct: 187 APELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFP 246
Query: 276 SAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNE 335
            AA +  E   F ++  L   + ++ +    +A+  N  S+ +M    + AA S RV ++
Sbjct: 247 VAAALFFEVTLFAVVALLVAPLGSTVVAAHQVAL--NFSSLVFMFPMSIGAAVSIRVGHK 304
Query: 336 LGAGNPDQAKNA 347
           LG  +   A  A
Sbjct: 305 LGEQDTKGAAIA 316
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody Length = 459 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query452
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 5e-77
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 9e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  246 bits (630), Expect = 5e-77
 Identities = 81/372 (21%), Positives = 166/372 (44%), Gaps = 9/372 (2%)

Query: 43  EEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGL 102
           +EA N +  + P+++A+V    +  V  + AG +  +++A  ++A S   +    F +GL
Sbjct: 9   KEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASI-WLPSILFGVGL 67

Query: 103 SGALETLCGQGFGAKHYRMLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISK 162
             AL  +  Q  GA     +   +    I +L  S+ I  +   T+ I+  +  + +++ 
Sbjct: 68  LMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMAT 127

Query: 163 QAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVY----L 218
           +   YM  +I  + AY + Q +  F    S+  P +    + + ++  + + FVY     
Sbjct: 128 KTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGA 187

Query: 219 TSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEH--TWEGFSFESFSFILTILKLALPS 276
             LG  G  +A ++  WI +L+L+ Y++ +K+  H   +E F       ++ + +L  P 
Sbjct: 188 PELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPV 247

Query: 277 AAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNEL 336
           AA +  E   F ++  L   + ++ +    +A+  N  S+ +M    + AA S RV ++L
Sbjct: 248 AAALFFEVTLFAVVALLVAPLGSTVVAAHQVAL--NFSSLVFMFPMSIGAAVSIRVGHKL 305

Query: 337 GAGNPDQAKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLAL 396
           G  +   A  A  V +   +  A +  L         A  ++ +  ++     L    A+
Sbjct: 306 GEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAI 365

Query: 397 SITLDSVQGVLS 408
              +D+VQ V +
Sbjct: 366 YQCMDAVQVVAA 377
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query452
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.87
3o7q_A438 L-fucose-proton symporter; transporter, multi-PASS 90.15
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=2.9e-44  Score=356.99  Aligned_cols=393  Identities=21%  Similarity=0.321  Sum_probs=363.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccchhhHH
Q 012948           43 EEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRML  122 (452)
Q Consensus        43 ~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~  122 (452)
                      +..|++++.++|..++++...+.+.+|+.+++++|++++|+++++.++..+. ..+..|++.+..+.+++++|++|+++.
T Consensus         9 ~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~~~~~   87 (460)
T 3mkt_A            9 KEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGRQHKI   87 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSSTTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCChhHH
Confidence            5889999999999999999999999999999999999999999999998887 888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 012948          123 GIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSA  202 (452)
Q Consensus       123 ~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  202 (452)
                      ++.++.++.+.++++++.+++..+.++++.+++.+++..+.+..|+++..++.++..+.....+.+|+.||++.++..++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  167 (460)
T 3mkt_A           88 PFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGF  167 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            99999999999999998776677888998888889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHhhcc----cccccchhHHHHHHHHHHHHHHHHHHHHhcccccc-c-ccCCChhhHHHHHHHHHHHhHH
Q 012948          203 LPMAIHFGIAYAFVYL----TSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEH-T-WEGFSFESFSFILTILKLALPS  276 (452)
Q Consensus       203 ~~~~v~i~l~~~li~~----~~~gi~G~~~a~~i~~~i~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~p~  276 (452)
                      ++.++|+++++++++.    +++|+.|+++|+.+++.+..++..++.+++++.++ + ++++.+.+++.+|++++.++|.
T Consensus       168 ~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~  247 (460)
T 3mkt_A          168 IGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPV  247 (460)
T ss_dssp             HHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhhHH
Confidence            9999999999999975    37999999999999999999988888876554322 1 1233344567899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 012948          277 AAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSV  356 (452)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~  356 (452)
                      .+.+....+...+++.+++++|  ++++++|++++++.++..++..+++++..|.+++++|++|.+++++..+++.++..
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~  325 (460)
T 3mkt_A          248 AAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGL  325 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999996  78999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhcccccccccccchh----hhhhhhcc
Q 012948          357 LLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSDADASELMAQGWQEDV----VGSTWLCG  432 (452)
Q Consensus       357 ~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~----~~~~~~~~  432 (452)
                      .++++.+++++++++++.++|++|+++++.+..++++++++.++++++.+..+++    ++.||+|.+    +++.|++.
T Consensus       326 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l----~~~g~~~~~~~~~~~~~~~~~  401 (460)
T 3mkt_A          326 ATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSL----RGYKDMTAIFHRTFISYWVLG  401 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH----GGGSTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998889999999999999999999999999999    999999999    66677888


Q ss_pred             chHHHHHHHH
Q 012948          433 LIWQHSISLA  442 (452)
Q Consensus       433 i~~~~~l~~~  442 (452)
                      +|+.+.+.+.
T Consensus       402 i~l~~~l~~~  411 (460)
T 3mkt_A          402 LPTGYILGMT  411 (460)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            8888887765
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00