Citrus Sinensis ID: 012955

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450--
Protein Sequence
MATLSPFLSKTPLSNTPTISFSSSISTPLKWKSITSFSPSGSSSSRSRRRIFIVQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLISIS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEEcccccccccccEEEEEEcccccccccccEEEEEEcccEEEEEEccccEEEEEEEcccccccccccEEEEEEcccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEccHHHHHHHHHcccccccccccccccEEcHHHHHHHHccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHccccEEEEEEEEEccHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccEEEccccEEEcccccEEEEEEccccEEcccccccccccHHHHHHHHHHHHHHHHcccccccccccccEEEEcccccccccccccccccccEEEEccccEEEEEEcccccEEEEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEcccccccccccccccEEEEEccccccccccccccccccccEEEEEcccccccccHcEEEEEEEccccccccccEEEEEEccEEEEEEccccccEEEEEEEccccEEEEcEEEEEEcccccccHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHccccccccEEEHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccEEEEEccccHHHcHHHHHHcccccccHHHHHHHHHHHHHHcHHHHEEEccccccEEEcccccEEEcEEEccEEEccEEccHHHccHHHHHHHHHHHHHHHHcccccHHHHccccEEEEEccccccccccccccccccEEEEEcccEEEEEEccccEEEEHHHHHHHHHHcc
Coil and Loop (DISEMBL)
matlspflsktplsntptisfsssistplkwksitsfspsgssssrsrRRIFIVQSKIREIFMpalsstmteGKIVSWIKSEGDVLSKGESVVVvesdkadmdvetFYDGILAAIvvpegesapvgAAIGILAETEAEVAQAKAKAAsagaaapashpvtstpvpavsppepkkvaesapsgprktvaTPYAKKLLKQHKVdinsvvgtgpfgritpedvekaagiapsksvapsaapaalpkpapaaapaapllpgstvvpftTMQAAVSKNMIEslsvptfrvgyPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHpvvnasckdgksftyNANINIAVAVAINgglitpvlqdadkLDLYLLSQKWKELVEKARskqlqpheynsgtftlsnlgmfgvdrfdailppgqgaimavgaskptvvadadgffgVKSKMLVSLISIS
Flexible Loop (DISEMBL)
matlspflsktplsntptisfsssistplkwksitsfspsgssssrsrrRIFIVQSKIREifmpalsstmteGKIVSWIksegdvlskGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKkvaesapsgprktVATPYAKKLlkqhkvdinsvvgtgpfgrITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKArskqlqpheynsGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLISIS
Low Complexity Region (SEG)
MATLSPFLSKTPLsntptisfsssistpLKWKsitsfspsgssssrsrrrIFIVQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILaeteaevaqakakaasagaaapaSHpvtstpvpavsppepkkvaESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIapsksvapsaapaalpkpapaaapaapllpGSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTallakaaamalVQHPVVNASCKDGKSFTYnaniniavavainGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLISIS
Disordered region (IsUnstruct)
*************************************************RIFIVQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE**********************************************************KKLLKQHKVDINSVVGTGPFGR*******************************************STVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKA*******HEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLI***
Disordered Region (DISOPRED)
****************************************************IVQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE*****************************************************PYAKKLLKQHKVDINSVVGTGPFGRITPEDVE*************************************TVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLISI*
Disordered Region (DISEMBL)
MATLSPFLSKTPLSNTPTISFSSSISTPLKWKSI**************RRIFIVQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA************************************************TVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKA*************************APAAPLLPGSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLISIS
Disordered Region (DISPRO)
**********************SSISTPLKWKSITSFSPSGS********IFIVQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET******************************************************P*AKK****HKVDINSVVGTGPFGRITPEDVEKAAGI***********************************PFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLISIS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATLSPFLSKTPLSNTPTISFSSSISTPLKWKSITSFSPSGSSSSRSRRRIFIVQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIxxxxxxxxxxxxxxxxxxxxxAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLISIS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	452	2.2.26 [Sep-21-2011]
Q1RJT3	418	Dihydrolipoyllysine-resid	yes	no	0.792	0.856	0.330	2e-52
Q4ULG1	412	Dihydrolipoyllysine-resid	yes	no	0.789	0.866	0.327	2e-51
Q92HK7	412	Dihydrolipoyllysine-resid	yes	no	0.789	0.866	0.329	3e-51
Q5M729	539	Dihydrolipoyllysine-resid	no	no	0.834	0.699	0.353	2e-50
O66119	440	Dihydrolipoyllysine-resid	yes	no	0.811	0.834	0.330	5e-50
P22439	501	Pyruvate dehydrogenase pr	yes	no	0.840	0.758	0.337	3e-48
Q68WK6	404	Dihydrolipoyllysine-resid	yes	no	0.772	0.863	0.322	2e-46
Q8RWN9	539	Dihydrolipoyllysine-resid	no	no	0.845	0.708	0.355	5e-46
Q9ZD20	408	Dihydrolipoyllysine-resid	yes	no	0.769	0.852	0.310	1e-45
Q19749	507	Dihydrolipoyllysine-resid	yes	no	0.823	0.733	0.344	3e-45

>sp|Q1RJT3|ODP2_RICBR Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia bellii (strain RML369-C) GN=pdhC PE=3 SV=1

 Score =  206 bits (525), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 128/387 (33%), Positives = 204/387 (52%), Gaps = 29/387 (7%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           ++ MPALS TMTEG +  W+K EGD ++ GE +  +E+DKA M+VE   +G LA I++P+
Sbjct: 4   KLLMPALSPTMTEGNLARWLKKEGDKINPGEVIAEIETDKATMEVEAVDEGTLAKIIIPQ 63

Query: 120 G-ESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKK--VA 176
           G ++ PV + I +L E   E++  +   A   + +P    + S P   ++P   K+  + 
Sbjct: 64  GSQNVPVNSLIAVLIEEGEELSGIEEFIAKNNSNSPKKEEI-SKPAETIAPQNVKEENIT 122

Query: 177 ESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSA 236
            ++     K  A+P AK+L K   V I  + G+GP GRI  +DV           ++   
Sbjct: 123 TASDQNNIKVFASPLAKRLAKIQNVRIEEIKGSGPHGRIIKQDV-----------LSHKG 171

Query: 237 APAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALD 295
              AL     +  P    L      P   ++  ++K ++ES  +VP F +      D L 
Sbjct: 172 GSKALSNKIVSRNPEEYRL-----APNNNIRKIIAKRLLESKQTVPHFYLSIECNVDKLL 226

Query: 296 ALYEKV-------KPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAV 348
            + E +       K   +++   +  A A AL + P  NAS  D     YN N++I+VAV
Sbjct: 227 DIREDINKSFGDDKSAKISVNDFIILAVAKALQEVPNANASWGDDAIRYYN-NVDISVAV 285

Query: 349 AINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDR 408
           AI  GL+TP++++AD+ ++  LS + K L++KAR  +L P E+  G FT+SNLGM+G+  
Sbjct: 286 AIENGLVTPIIRNADQKNIVDLSSEMKGLIKKARENKLTPEEFQGGGFTISNLGMYGIKN 345

Query: 409 FDAILPPGQGAIMAVGASKPTVVADAD 435
           F+AI+ P Q  IM VG+S    +   D
Sbjct: 346 FNAIINPPQSCIMGVGSSSKRAIVKND 372

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
Rickettsia bellii (strain RML369-C) (taxid: 336407)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 1EC: 2

>sp|Q4ULG1|ODP2_RICFE Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=pdhC PE=3 SV=1

 Score =  203 bits (516), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 126/385 (32%), Positives = 202/385 (52%), Gaps = 28/385 (7%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           +I MP LS TMTEG +  W+K EGD ++ GE +  +E+DKA M+VE   +GILA IV+P+
Sbjct: 4   KILMPVLSPTMTEGNLARWLKKEGDKVNPGEVIAEIETDKATMEVEAVDEGILAKIVIPQ 63

Query: 120 G-ESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAES 178
             ++ PV + I +L+E   E     A  A     +P+     + P P  +  + ++    
Sbjct: 64  NSQNVPVNSLIAVLSEEGEEKTDIDAFIAKNNNVSPSPKTDANLPKPHENIAKVEEQVAV 123

Query: 179 APSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAP 238
                 K  A+P AK+L K   + + SV G+GP GRI  +D+          S  PS   
Sbjct: 124 IKHDASKIFASPLAKRLAKMGNIRLESVKGSGPHGRIVKQDI---------LSYTPSTVH 174

Query: 239 AALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDAL 297
             +    P             +VP   ++  ++K ++ES  +VP F +      D L  +
Sbjct: 175 NKIVSRNPEEY---------RLVPNNNIRKIIAKRLLESKQTVPHFYLSIECNVDKLLDI 225

Query: 298 YEKV-------KPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAI 350
            E +       K   +++   +  A A AL + P  NAS  +  +  Y+ N++I+VAVAI
Sbjct: 226 REDINKSFSEDKSTRISVNDFIILAVAKALQELPNANASWGED-AIRYHNNVDISVAVAI 284

Query: 351 NGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFD 410
             GL+TP++++A++ ++  LS++ KEL++KA+  +L P E+  G FT+SNLGM+G+  F+
Sbjct: 285 ENGLVTPIVKNANQKNIIELSREMKELIKKAKDNKLTPEEFQGGGFTISNLGMYGIKNFN 344

Query: 411 AILPPGQGAIMAVGASKPTVVADAD 435
           AI+ P Q  IM VGAS    +   D
Sbjct: 345 AIINPPQSCIMGVGASAKRAIVKND 369

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q92HK7|ODP2_RICCN Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=pdhC PE=3 SV=1

 Score =  203 bits (516), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 127/385 (32%), Positives = 201/385 (52%), Gaps = 28/385 (7%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           +I MPALS TMTEG +  W+K EGD ++ GE +  +E+DKA M+VE   +GILA IV+P+
Sbjct: 4   KILMPALSPTMTEGNLARWLKKEGDKVNPGEVIAEIETDKATMEVEAVDEGILAKIVIPQ 63

Query: 120 G-ESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAES 178
             ++ PV + I +L+E   E     A  A   + +P+     + P P  +    ++    
Sbjct: 64  NSQNVPVNSLIAVLSEEGEEKTDIDAFIAKNNSVSPSPKTDANLPKPHENIANVEEQVTV 123

Query: 179 APSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAP 238
                 +  A+P AK+L K   +   SV G+GP GRI  +D+          S  PS A 
Sbjct: 124 IKHDVSRIFASPLAKRLAKMRNIRFESVKGSGPHGRIVKQDI---------LSYTPSTAH 174

Query: 239 AALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDAL 297
             +    P             +VP   ++  ++K ++ES  +VP F +      D L  +
Sbjct: 175 NKIVSRNPEEY---------RLVPNNNIRKIIAKRLLESKQTVPHFYLSIECNVDKLLDI 225

Query: 298 YEKV-------KPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAI 350
            E +       K   +++   +  A A AL + P  NAS  +     YN N++I+VAVAI
Sbjct: 226 REDINKFFSEDKSTRISVNDFIILAVAKALQEVPNANASWGEDAIRYYN-NVDISVAVAI 284

Query: 351 NGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFD 410
             GL+TP++++A++ ++  LS++ K L++KA+  +L P E+  G FT+SNLGM+G+  F+
Sbjct: 285 ENGLVTPIVKNANQKNILELSREMKALIKKAKDNKLTPEEFQGGGFTISNLGMYGIKNFN 344

Query: 411 AILPPGQGAIMAVGASKPTVVADAD 435
           AI+ P Q  IM VGAS    +   D
Sbjct: 345 AIINPPQSCIMGVGASAKRAIVKND 369

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Rickettsia conorii (strain ATCC VR-613 / Malish 7) (taxid: 272944)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q5M729|OPD23_ARATH Dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=At1g54220 PE=1 SV=1

 Score =  200 bits (509), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 145/410 (35%), Positives = 213/410 (51%), Gaps = 33/410 (8%)

Query: 59  REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVP 118
           +EI MP+LS TMTEG I  W+K EGD ++ GE +  VE+DKA +++E   +G LA IV  
Sbjct: 112 QEIGMPSLSPTMTEGNIARWLKKEGDKVAPGEVLCEVETDKATVEMECMEEGYLAKIVKA 171

Query: 119 EG-ESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPA----------V 167
           EG +   VG  I I  E E ++ + K    S+ A A    P  + P PA           
Sbjct: 172 EGSKEIQVGEVIAITVEDEEDIGKFKDYTPSSTADA---APTKAEPTPAPPKEEKVKQPS 228

Query: 168 SPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIA 227
           SPPEPK    S P    +  A+P A+KL + + V ++ + GTGP GRI   D+++     
Sbjct: 229 SPPEPKASKPSTPPTGDRVFASPLARKLAEDNNVPLSDIEGTGPEGRIVKADIDEYLA-- 286

Query: 228 PSKSVAPSAAPAALPKPAPAAAPAAPLL-----PGSTVVPFTTMQAAVSKNMIES--LSV 280
                  S+   A  KP+ +    AP L     P S +   T  + A SK  I    L+V
Sbjct: 287 -------SSGKGATAKPSKSTDSKAPALDYVDIPHSQIRKVTASRLAFSKQTIPHYYLTV 339

Query: 281 PTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNA 340
            T       +   L++  E    K +++  L+ KAAA+AL + P  N+S  D     +  
Sbjct: 340 DTCVDKLMALRSQLNSFKEASGGKRISVNDLVVKAAALALRKVPQCNSSWTDDYIRQFK- 398

Query: 341 NINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSN 400
           N+NI VAV    GL  PV++DAD+  L  + ++ + L +KA+   L+P +Y  GTFT+SN
Sbjct: 399 NVNINVAVQTENGLYVPVVKDADRKGLSTIGEEVRLLAQKAKENSLKPEDYEGGTFTVSN 458

Query: 401 LGM-FGVDRFDAILPPGQGAIMAVGASKPTVV-ADADGFFGVKSKMLVSL 448
           LG  FG+ +F A++ P Q AI+AVG+++  VV  +    F   S M V+L
Sbjct: 459 LGGPFGIKQFCAVVNPPQAAILAVGSAEKRVVPGNGPDQFNFASYMPVTL 508

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O66119|ODP2_ZYMMO Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=pdhC PE=3 SV=2

 Score =  199 bits (505), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 133/402 (33%), Positives = 213/402 (52%), Gaps = 35/402 (8%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           E+ MPALS TMTEG +  W+  EGD +  G+ +  +E+DKA M+ ET   GI+A I+VPE
Sbjct: 4   EVKMPALSPTMTEGTLAKWLVKEGDAVKAGDILAEIETDKAIMEFETVDAGIIAKILVPE 63

Query: 120 G-ESAPVGAAIGILAETEAEVAQAKAKAAS-----AGAAAPASHPVTSTPVPAVSPPEPK 173
           G E+  VG  I ++AE   +V+Q  A A+S     +  A  A      +   ++     K
Sbjct: 64  GSENIAVGQVIAVMAEAGEDVSQVAASASSQISEPSEKADVAQKETADSETISIDASLDK 123

Query: 174 KVAESAPSGPRKTV------------ATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVE 221
            ++ +      + +            A+P AK+L K++ VD+  V G+GP GRI   D+E
Sbjct: 124 AISNAGYGNKTENMTASYQEKAGRIKASPLAKRLAKKNHVDLKQVNGSGPHGRIIKADIE 183

Query: 222 KAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSV 280
                A   S  PS +    P+ +       P       +  + M+  +++ + ES  ++
Sbjct: 184 AFIAEANQASSNPSVST---PEASGKITHDTP----HNSIKLSNMRRVIARRLTESKQNI 236

Query: 281 PTFRVGYPIITDALDALYEK------VKPKGVTMTALLAKAAAMALVQHPVVNASCKDGK 334
           P   +   +  DAL  L  +      V+   +++  +L KA A+AL   P VN +  DG 
Sbjct: 237 PHIYLTVDVQMDALLKLRSELNESLAVQNIKISVNDMLIKAQALALKATPNVNVAF-DGD 295

Query: 335 SFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSG 394
                +  +I+VAV++ GGLITP+L+ AD   L  LS + KEL+ +AR  +LQP EY  G
Sbjct: 296 QMLQFSQADISVAVSVEGGLITPILKQADTKSLSALSVEMKELIARAREGRLQPQEYQGG 355

Query: 395 TFTLSNLGMFGVDRFDAILPPGQGAIMAVGA--SKPTVVADA 434
           T ++SN+GMFG+ +F+A++ P Q +I+A+G+   +P V+ DA
Sbjct: 356 TSSISNMGMFGIKQFNAVINPPQASILAIGSGERRPWVIDDA 397

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Zymomonas mobilis (strain ATCC 31821 / ZM4 / CP4) (taxid: 264203)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P22439|ODPX_BOVIN Pyruvate dehydrogenase protein X component OS=Bos taurus GN=PDHX PE=1 SV=3

 Score =  193 bits (490), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 142/421 (33%), Positives = 224/421 (53%), Gaps = 41/421 (9%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           +I MP+LS TM EG IV W+K EG+ +S G+++  +E+DKA + ++   DGILA IVV E
Sbjct: 58  KILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVAE 117

Query: 120 G-ESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAES 178
           G ++  +G+ IG+L E E E  +        G   PA+ P  S P P+  P     V + 
Sbjct: 118 GSKNIRLGSLIGLLVE-EGEDWKHVEIPKDTGPPPPAAKP--SVPPPSAEPQIATPVKKE 174

Query: 179 APSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAP---- 234
            P G  +   +P A+ +L++H +D N    TGP G  T ED  K   +  +  +      
Sbjct: 175 HPPGKVQFRLSPAARNILEKHALDANQGTATGPRGIFTKEDALKLVQLKQTGKITEPRPT 234

Query: 235 --------------SAAPAALPKPA--PAAAPAAPLLPGS-TVVPFTTMQAAVSKNMIES 277
                         +AA A+ P+P   P + P  P + G+ T +P + ++  ++K + ES
Sbjct: 235 AALPTTPAAPLPPQAAATASYPRPMIPPVSTPGQPNVEGTFTEIPASNIRRVIAKRLTES 294

Query: 278 LSVPTFRVGYP--------IITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNAS 329
            S  T    Y         ++T   + + + +K   V++   + KAAA+ L Q P VNAS
Sbjct: 295 KS--TIPHAYATTDCDLGAVLTARQNLVRDDIK---VSVNDFIIKAAAVTLKQMPNVNAS 349

Query: 330 CKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPH 389
             DG+      +I+I+VAVA + GLITPV++DA    L  ++   K L +KAR  +L P 
Sbjct: 350 W-DGEGAKQLPSIDISVAVATDRGLITPVIKDAAAKGLQEIADSVKALSKKARDGKLLPE 408

Query: 390 EYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPT--VVADADGFFGVKSKMLVS 447
           EY  G+F++SNLGMFG+D F A++ P Q  I+AVG  +P   +  D +G   ++ + L++
Sbjct: 409 EYQGGSFSISNLGMFGIDEFTAVINPPQACILAVGRFRPVLKLTQDEEGNAQLQQRQLIT 468

Query: 448 L 448
           +
Sbjct: 469 V 469

Required for anchoring dihydrolipoamide dehydrogenase (E3) to the dihydrolipoamide transacetylase (E2) core of the pyruvate dehydrogenase complexes of eukaryotes. This specific binding is essential for a functional PDH complex.

Bos taurus (taxid: 9913)

>sp|Q68WK6|ODP2_RICTY Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=pdhC PE=3 SV=1

 Score =  186 bits (473), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/385 (32%), Positives = 196/385 (50%), Gaps = 36/385 (9%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           +I MPALS TM +G +  W+K EGD ++ GE +  +E+DKA M+VE+  +GILA I++P+
Sbjct: 4   KILMPALSPTMKDGNLARWLKKEGDKVNPGEVIAEIETDKATMEVESVDEGILAKIIIPQ 63

Query: 120 G-ESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAES 178
             ++ PV + I +L+E     A   A  A   + + +      T        E     E 
Sbjct: 64  NSQNVPVNSLIAVLSEEGESTADIDAFIAKNNSVSLS----LKTDTTLKKANESITNVEV 119

Query: 179 APSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAP 238
                 K  A+P AK+L K   + + SV G+GP GRI  +D+          S +PS A 
Sbjct: 120 VKHDLSKIFASPLAKRLAKIRNIRLESVQGSGPHGRIVKQDI---------LSYSPSTAY 170

Query: 239 AALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDAL 297
               +   +             VP   ++  ++K ++ES  +VP F +      D L  +
Sbjct: 171 NRDTEEYRS-------------VPNNNIRQIIAKRLLESKQTVPHFYLSIECNVDKLLDI 217

Query: 298 YEKV-------KPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAI 350
            E +       K   +++   +  A A AL + P  NAS  +     YN N++I+VAVAI
Sbjct: 218 REDINKSFSEDKLTKISVNDFIILAVAKALQEVPNANASWAEDAIRYYN-NVDISVAVAI 276

Query: 351 NGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFD 410
             G++TP+++DA+K ++  LS + K L++KA+  +L P E+  G FT+SNLGM+G+  F+
Sbjct: 277 ENGIVTPIIKDANKKNIIELSHEMKILIKKAKDNKLTPVEFQGGGFTISNLGMYGIKNFN 336

Query: 411 AILPPGQGAIMAVGASKPTVVADAD 435
           AI+   Q  IM VGAS    +   D
Sbjct: 337 AIINTPQSCIMGVGASTKRAIVKND 361

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Rickettsia typhi (strain ATCC VR-144 / Wilmington) (taxid: 257363)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q8RWN9|OPD22_ARATH Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=At3g13930 PE=1 SV=2

 Score =  186 bits (471), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 144/405 (35%), Positives = 211/405 (52%), Gaps = 23/405 (5%)

Query: 59  REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVP 118
           +EI MP+LS TMTEG I  W+K EGD ++ GE +  VE+DKA +++E   +G LA IV  
Sbjct: 112 QEIGMPSLSPTMTEGNIARWLKKEGDKVAPGEVLCEVETDKATVEMECMEEGFLAKIVKE 171

Query: 119 EG-ESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPA-------VSPP 170
           EG +   VG  I I  E E ++ + K    S+     A     +  +P         S P
Sbjct: 172 EGAKEIQVGEVIAITVEDEDDIQKFKDYTPSSDTGPAAPEAKPAPSLPKEEKVEKPASAP 231

Query: 171 EPK-KVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPS 229
           E K     SAPS  R   A+P A+KL + + V ++S+ GTGP GRI   DVE       S
Sbjct: 232 EAKISKPSSAPSEDR-IFASPLARKLAEDNNVPLSSIKGTGPEGRIVKADVED---FLAS 287

Query: 230 KSVAPSAAPAALPKPAPAAAPAAPL--LPGSTVVPFTTMQAAVSKNMI--ESLSVPTFRV 285
            S   +A P+   K   +  PA     +P + +   T  + A SK  I    L+V T   
Sbjct: 288 GSKETTAKPS---KQVDSKVPALDYVDIPHTQIRKVTASRLAFSKQTIPHYYLTVDTCVD 344

Query: 286 GYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIA 345
               +   L++  E    K +++  L+ KAAA+AL + P  N+S  D     +  N+NI 
Sbjct: 345 KMMGLRSQLNSFQEASGGKRISVNDLVIKAAALALRKVPQCNSSWTDEYIRQFK-NVNIN 403

Query: 346 VAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGM-F 404
           VAV    GL  PV++DADK  L  + ++ + L +KA+   L+P +Y  GTFT+SNLG  F
Sbjct: 404 VAVQTENGLYVPVVKDADKKGLSTIGEEVRFLAQKAKENSLKPEDYEGGTFTVSNLGGPF 463

Query: 405 GVDRFDAILPPGQGAIMAVGASKPTVV-ADADGFFGVKSKMLVSL 448
           G+ +F A++ P Q AI+A+G+++  VV       + V S M V+L
Sbjct: 464 GIKQFCAVINPPQAAILAIGSAEKRVVPGTGPDQYNVASYMSVTL 508

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q9ZD20|ODP2_RICPR Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia prowazekii (strain Madrid E) GN=pdhC PE=3 SV=1

 Score =  184 bits (467), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 121/390 (31%), Positives = 196/390 (50%), Gaps = 42/390 (10%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           +I MPALS TM EG +  W+K EGD ++ GE +  +E+DKA M+VE+  +GILA I++P+
Sbjct: 4   KILMPALSPTMREGNLARWLKKEGDKVNPGEVIAEIETDKATMEVESVDEGILAKIIIPQ 63

Query: 120 G-ESAPVGAAIGILAETEAEVAQ-----AKAKAASAGAAAPASHPVTSTPVPAVSPPEPK 173
             ++ PV + I +L+E   + A      A+  + S      A+   ++  +  V      
Sbjct: 64  NSQNVPVNSLIAVLSEEGEDKADIDSFIAQNNSVSLSLKTDATLKKSNDSITNV------ 117

Query: 174 KVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVA 233
              E       K  A+P AK+L K   + + +V G+GP GRI  +D+        S  + 
Sbjct: 118 ---EGIKHDSNKIFASPLAKRLAKIGDIRLENVQGSGPHGRIVKQDILSYDSSTSSNKIV 174

Query: 234 PSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITD 292
                                      VP   ++  ++K ++ES  +VP F +      D
Sbjct: 175 YRDTEEYRS------------------VPNNNIRKIIAKRLLESKQTVPHFYLSIECNVD 216

Query: 293 ALDALYEKV-------KPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIA 345
            L  + E +       K   +++   +  A A AL + P  NAS  +     YN N++I+
Sbjct: 217 KLLDVREDINKSFSEDKVTKISVNDFIILAVAKALQEVPNANASWSEDAIRYYN-NVDIS 275

Query: 346 VAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFG 405
           VAVAI  G++TP+++DA+K ++  LS++ K L++KA+  +L P E+  G FT+SNLGM+G
Sbjct: 276 VAVAIENGIVTPIVKDANKKNIIELSREMKTLIKKAKDNKLTPIEFQGGGFTISNLGMYG 335

Query: 406 VDRFDAILPPGQGAIMAVGASKPTVVADAD 435
           +  F+AI+   Q  IM VGAS    +   D
Sbjct: 336 IKNFNAIINTPQSCIMGVGASTKRAIVKND 365

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Rickettsia prowazekii (strain Madrid E) (taxid: 272947)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q19749|ODP2_CAEEL Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Caenorhabditis elegans GN=F23B12.5 PE=1 SV=1

 Score =  183 bits (464), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 145/421 (34%), Positives = 226/421 (53%), Gaps = 49/421 (11%)

Query: 57  KIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV 116
           K   + +PALS TM  G +VSW K EGD LS+G+ +  +E+DKA M  ET  +G LA I+
Sbjct: 76  KHNRVALPALSPTMELGTVVSWQKKEGDQLSEGDLLCEIETDKATMGFETPEEGYLAKIL 135

Query: 117 VPEG-ESAPVGAAIGILAETEAEVA---QAKAKAASAGAAAPASHPVTSTPVPAVS-PPE 171
           + EG +  P+G  + I+ + EA+VA     K   AS+G +APA+        PA S  P 
Sbjct: 136 IQEGSKDVPIGKLLCIIVDNEADVAAFKDFKDDGASSGGSAPAAEKAPEPAKPAASSQPS 195

Query: 172 PKKVAESAPSGPR----------KTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVE 221
           P      APS P+          +  A+P+AKKL  ++ +D++ V G+GP GRI   D+ 
Sbjct: 196 PPAQMYQAPSVPKSAPIPHSSSGRVSASPFAKKLAAENGLDLSGVSGSGPGGRILASDLS 255

Query: 222 KAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESLS-V 280
           +A    P+K    +   A   +               T +P + M+  ++K + ES S +
Sbjct: 256 QA----PAKGATSTTTQAVSGQ-------------DYTDIPLSNMRKTIAKRLTESKSTI 298

Query: 281 PTFRVGYPIITDALDALYEKVK---PKG-------VTMTALLAKAAAMALVQHPVVNASC 330
           P + +   I  D L  + EK+     KG       +++   + KA+A+A  + P  N+  
Sbjct: 299 PHYYLTSEIQLDTLLQVREKLNGLLAKGTSGQATKISINDFIIKASALACQRVPEANSYW 358

Query: 331 KDGKSFTY-NANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPH 389
            D  SF   N +++++VAV+   GLITP++ +A    L  ++ +  EL ++AR  +LQPH
Sbjct: 359 MD--SFIRENHHVDVSVAVSTPAGLITPIIFNAHAKGLATIASEIVELAQRAREGKLQPH 416

Query: 390 EYNSGTFTLSNLGMFG-VDRFDAILPPGQGAIMAVGASKPTVVAD-ADGFFGVKSKMLVS 447
           E+  GTFT+SNLGMFG V  F AI+ P Q  I+A+G +   +V D A+G+  +K+ M V+
Sbjct: 417 EFQGGTFTVSNLGMFGSVSDFTAIINPPQSCILAIGGASDKLVPDEAEGYKKIKT-MKVT 475

Query: 448 L 448
           L
Sbjct: 476 L 476

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	452
449434630	487	PREDICTED: dihydrolipoyllysine-residue a	0.953	0.885	0.743	1e-165
15230922	480	2-oxoacid dehydrogenases acyltransferase	0.953	0.897	0.741	1e-164
225423947	488	PREDICTED: dihydrolipoyllysine-residue a	0.969	0.897	0.728	1e-163
255576459	483	Dihydrolipoyllysine-residue acetyltransf	0.969	0.906	0.761	1e-162
297814808	482	hypothetical protein ARALYDRAFT_904762 [	0.942	0.883	0.739	1e-161
9279589	432	dihydrolipoamide S-acetyltransferase [Ar	0.873	0.914	0.784	1e-159
224099359	467	predicted protein [Populus trichocarpa]	0.949	0.918	0.734	1e-159
224111700	435	predicted protein [Populus trichocarpa]	0.858	0.891	0.805	1e-157
356498274	461	PREDICTED: dihydrolipoyllysine-residue a	0.940	0.921	0.742	1e-156
356575530	472	PREDICTED: dihydrolipoyllysine-residue a	0.882	0.845	0.756	1e-156

>gi|449434630|ref|XP_004135099.1| PREDICTED: dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex-like [Cucumis sativus] gi|449523744|ref|XP_004168883.1| PREDICTED: dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex-like [Cucumis sativus]

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 347/467 (74%), Positives = 376/467 (80%), Gaps = 36/467 (7%)

Query: 5   SPFLSKTPLSNTPT---ISFSSSISTPLKWKSITSFSPSGSSSSRSRRRIFIVQSKIREI 61
           SPFLS+  LS+  T    SFS S+S+ L W S  S +   S  +  RRR+ ++QSKIREI
Sbjct: 3   SPFLSRAALSSNTTSVPFSFSYSVSSRLPWSSSRSHT---SVPANYRRRLPVIQSKIREI 59

Query: 62  FMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGE 121
           FMPALSSTMTEGKIVSW+KSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVV EGE
Sbjct: 60  FMPALSSTMTEGKIVSWVKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVGEGE 119

Query: 122 SAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKK-VAESAP 180
           +APVGA IG+LAETE EVA+AKAKAAS   +APA+     +P P      P   +++S+P
Sbjct: 120 TAPVGAPIGLLAETEEEVAEAKAKAASKSTSAPAAPAAAVSPSPPPPSSSPAPAISQSSP 179

Query: 181 --SGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSK-------- 230
              GP+K VATP AKKL KQHKVDI SV GTGPFGRITP DVE AAGIAPSK        
Sbjct: 180 PSDGPKKIVATPQAKKLAKQHKVDIGSVTGTGPFGRITPADVEAAAGIAPSKPAVSNVAS 239

Query: 231 ---------SVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESLSVP 281
                        SAAP+ LP P          +PGSTVVPFTTMQAAVSKNM+ESLSVP
Sbjct: 240 PVAAEAAAVPSKASAAPSNLPPP----------VPGSTVVPFTTMQAAVSKNMVESLSVP 289

Query: 282 TFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNAN 341
           TFRVGYP+ TDALDALYEKVKPKGVTMTALLAKAAAMAL QHPVVNASCKDGKSFTYN+N
Sbjct: 290 TFRVGYPVSTDALDALYEKVKPKGVTMTALLAKAAAMALAQHPVVNASCKDGKSFTYNSN 349

Query: 342 INIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNL 401
           INIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNL
Sbjct: 350 INIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNL 409

Query: 402 GMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSL 448
           GMFGVD+FDAILPPGQGAIMAVGASKPTVV DADGFF VKSKMLV++
Sbjct: 410 GMFGVDKFDAILPPGQGAIMAVGASKPTVVTDADGFFSVKSKMLVNV 456

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230922|ref|NP_189215.1| 2-oxoacid dehydrogenases acyltransferase family protein [Arabidopsis thaliana] gi|5881963|gb|AAD55139.1|AF066079_1 dihydrolipoamide S-acetyltransferase [Arabidopsis thaliana] gi|14335166|gb|AAK59863.1| AT3g25860/MPE11_1 [Arabidopsis thaliana] gi|26983848|gb|AAN86176.1| putative dihydrolipoamide S-acetyltransferase [Arabidopsis thaliana] gi|332643559|gb|AEE77080.1| 2-oxoacid dehydrogenases acyltransferase family protein [Arabidopsis thaliana]

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 327/441 (74%), Positives = 358/441 (81%), Gaps = 10/441 (2%)

Query: 13  LSNTPT-ISFSSSISTPLKWKSITSFSPSGSSSSRSRRRIFIVQSKIREIFMPALSSTMT 71
           L+N+ + ISF+SS+S  L+     S +P+      S RR   V+SKIREIFMPALSSTMT
Sbjct: 14  LTNSKSNISFASSVSPSLRSVVFRSTTPA-----TSHRRSMTVRSKIREIFMPALSSTMT 68

Query: 72  EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGI 131
           EGKIVSWIK+EG+ L+KGESVVVVESDKADMDVETFYDG LAAIVV EGE+APVGAAIG+
Sbjct: 69  EGKIVSWIKTEGEKLAKGESVVVVESDKADMDVETFYDGYLAAIVVGEGETAPVGAAIGL 128

Query: 132 LAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAE---SAPSGPRKTVA 188
           LAETEAE+ +AK+KAAS  +++ A   V S P    SP           +   GPRKTVA
Sbjct: 129 LAETEAEIEEAKSKAASKSSSSVAEAVVPSPPPVTSSPAPAIAQPAPVTAVSDGPRKTVA 188

Query: 189 TPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAA 248
           TPYAKKL KQHKVDI SV GTGPFGRIT  DVE AAGIAPSKS      P   P  A A 
Sbjct: 189 TPYAKKLAKQHKVDIESVAGTGPFGRITASDVETAAGIAPSKSSIAPPPPPPPPVTAKAT 248

Query: 249 APAAP-LLPGSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVT 307
               P LLP S++VPFT MQ+AVSKNMIESLSVPTFRVGYP+ TDALDALYEKVKPKGVT
Sbjct: 249 TTNLPPLLPDSSIVPFTAMQSAVSKNMIESLSVPTFRVGYPVNTDALDALYEKVKPKGVT 308

Query: 308 MTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDL 367
           MTALLAKAA MAL QHPVVNASCKDGKSF+YN++INIAVAVAINGGLITPVLQDADKLDL
Sbjct: 309 MTALLAKAAGMALAQHPVVNASCKDGKSFSYNSSINIAVAVAINGGLITPVLQDADKLDL 368

Query: 368 YLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASK 427
           YLLSQKWKELV KARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASK
Sbjct: 369 YLLSQKWKELVGKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASK 428

Query: 428 PTVVADADGFFGVKSKMLVSL 448
           PTVVAD DGFF VK+ MLV++
Sbjct: 429 PTVVADKDGFFSVKNTMLVNV 449

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423947|ref|XP_002282287.1| PREDICTED: dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [Vitis vinifera]

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 336/461 (72%), Positives = 372/461 (80%), Gaps = 23/461 (4%)

Query: 5   SPFLSKTPLSNTP---TISFSSSISTPLKWKSITSFSPSGSSSSRSRRRIFIVQSKIREI 61
           SP LS+  +SN     TISFSSS+S  L W+   +F        +S R++  VQ+KIREI
Sbjct: 3   SPLLSRVSISNATAGNTISFSSSVSNGLLWRRSIAFP------DKSSRKVSTVQAKIREI 56

Query: 62  FMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGE 121
           FMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVV +GE
Sbjct: 57  FMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVGDGE 116

Query: 122 SAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAES--- 178
            APVGA IG+LAETE E+A+AKAKA+ +G++AP   P  +    + + P       +   
Sbjct: 117 VAPVGAPIGLLAETEEEIAEAKAKASKSGSSAPPPPPAPAAASASPAAPAVAPPKSAASA 176

Query: 179 -APSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAA 237
             P GP+K VATP+AKKL KQHKVDI SVVGTGPFGRITP DVE AAGI+PSKS   +  
Sbjct: 177 AVPDGPKKIVATPFAKKLAKQHKVDIGSVVGTGPFGRITPADVEAAAGISPSKSTGVNVV 236

Query: 238 PAALPKPAPAAAPAAPL----------LPGSTVVPFTTMQAAVSKNMIESLSVPTFRVGY 287
            +    PAPA   AA            +PGSTVVPFTTMQAAVSKNM+ESLSVPTFRVGY
Sbjct: 237 SSVAAAPAPAPVAAAAPKAAASPAPPPIPGSTVVPFTTMQAAVSKNMVESLSVPTFRVGY 296

Query: 288 PIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVA 347
           P++TD LDALYEKVKPKGVTMTALLAKAAAMAL QHPVVNASCKDGK+FTYN++INIAVA
Sbjct: 297 PVLTDKLDALYEKVKPKGVTMTALLAKAAAMALAQHPVVNASCKDGKTFTYNSSINIAVA 356

Query: 348 VAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVD 407
           VAINGGLITPVLQDADKLDLYLLSQKWKELVEKAR+KQLQPHEYNSGTFTLSNLGMFGVD
Sbjct: 357 VAINGGLITPVLQDADKLDLYLLSQKWKELVEKARAKQLQPHEYNSGTFTLSNLGMFGVD 416

Query: 408 RFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSL 448
           RFDAILPPGQGAIMAVGASKPTVV D DGFF VKSKMLV++
Sbjct: 417 RFDAILPPGQGAIMAVGASKPTVVTDKDGFFSVKSKMLVNV 457

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576459|ref|XP_002529121.1| Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis] gi|223531400|gb|EEF33234.1| Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 352/462 (76%), Positives = 376/462 (81%), Gaps = 24/462 (5%)

Query: 1   MATLSPFLSKTPLSNTPTISFSSSISTPLKWKSITSFSPSGSSSSRSRR-RIFIVQSKIR 59
           MA  SPFLSK P+SN  TISFSSS+S        T  S S    + +RR     VQSKIR
Sbjct: 1   MAASSPFLSKIPISNK-TISFSSSLSPS---FPPTFPSKSHHRQNHARRSNALRVQSKIR 56

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           EIFMPALSSTMTEGKIVSWIK+EGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE
Sbjct: 57  EIFMPALSSTMTEGKIVSWIKAEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 116

Query: 120 GESAPVGAAIGILAETEAEVAQAK---------AKAASAGAAAPASHPVTSTPVPAVSPP 170
           GESAPVGA IG+LAETE E+A+AK         + + +  A AP   PV+ST  PA++  
Sbjct: 117 GESAPVGAPIGLLAETEDEIAEAKAKANANTNASSSQTTAAVAPTPPPVSSTRAPAIAQ- 175

Query: 171 EPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSK 230
                A SAP GP+K VATPYA+KL KQH VDIN +VG+GP GRITP DVE AAGI   K
Sbjct: 176 --PAPAASAPEGPKKIVATPYARKLAKQHTVDINKLVGSGPNGRITPADVEAAAGI---K 230

Query: 231 SVAPSAAPAALPKPAPAAAPAAPLLP----GSTVVPFTTMQAAVSKNMIESLSVPTFRVG 286
           SVA +   AA P  APA AP A   P    GSTVVPFTTMQ+AVSKNM+ESLSVPTFRVG
Sbjct: 231 SVASAPVAAAAPAAAPAKAPPAAAAPPPLPGSTVVPFTTMQSAVSKNMVESLSVPTFRVG 290

Query: 287 YPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAV 346
           YPI TDALDALYEKVKPKGVTMTALLAKAAAMAL QHPVVNASCKDGKSFTYN+NINIAV
Sbjct: 291 YPISTDALDALYEKVKPKGVTMTALLAKAAAMALAQHPVVNASCKDGKSFTYNSNINIAV 350

Query: 347 AVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGV 406
           AVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGV
Sbjct: 351 AVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGV 410

Query: 407 DRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSL 448
           DRFDAILPPGQGAIMAVGASKPTVVAD DGFF VKSKMLV++
Sbjct: 411 DRFDAILPPGQGAIMAVGASKPTVVADKDGFFSVKSKMLVNV 452

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814808|ref|XP_002875287.1| hypothetical protein ARALYDRAFT_904762 [Arabidopsis lyrata subsp. lyrata] gi|297321125|gb|EFH51546.1| hypothetical protein ARALYDRAFT_904762 [Arabidopsis lyrata subsp. lyrata]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 323/437 (73%), Positives = 347/437 (79%), Gaps = 11/437 (2%)

Query: 18  TISFSSSISTPLKWKSITSFSPSGSSSSRSRRRIFIVQSKIREIFMPALSSTMTEGKIVS 77
            ISF+SSIS  L+     S  P+      S RR   V+SKIREIFMPALSSTMTEGKIVS
Sbjct: 20  NISFASSISPSLRSVVFRSSIPA-----TSHRRSMTVRSKIREIFMPALSSTMTEGKIVS 74

Query: 78  WIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA 137
           WIK+EG+ L+KGESVVVVESDKADMDVETFYDG LAAIVV EGE+APVG AIG+LAETEA
Sbjct: 75  WIKTEGEKLAKGESVVVVESDKADMDVETFYDGYLAAIVVGEGETAPVGTAIGLLAETEA 134

Query: 138 EVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAE---SAPSGPRKTVATPYAKK 194
           E+ +AK KAAS  +++     V S P    SP           +   GPRKTVATPYAKK
Sbjct: 135 EIEEAKTKAASKSSSSVVEAVVPSPPPVTSSPAPAIAQPAPVTAVADGPRKTVATPYAKK 194

Query: 195 LLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPL 254
           L KQHKVDI S+ GTGPFGRIT  DVE AAGIAPSKS      P   P  A A      L
Sbjct: 195 LAKQHKVDIGSIAGTGPFGRITASDVETAAGIAPSKSSVAQPPPPPTPVAAKATTTTTNL 254

Query: 255 LP---GSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTAL 311
            P    S++VPFT MQ+AVSKNMIESLSVPTFRVGYP+ TDALDALYEKVKPKGVTMTAL
Sbjct: 255 PPLLPDSSIVPFTAMQSAVSKNMIESLSVPTFRVGYPVNTDALDALYEKVKPKGVTMTAL 314

Query: 312 LAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLS 371
           LAKAA MAL QHPVVNASCKDGKSF+YNANINIAVAVAINGGLITPVLQDADKLDLYLLS
Sbjct: 315 LAKAAGMALAQHPVVNASCKDGKSFSYNANINIAVAVAINGGLITPVLQDADKLDLYLLS 374

Query: 372 QKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVV 431
           QKWKELV KARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVV
Sbjct: 375 QKWKELVGKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVV 434

Query: 432 ADADGFFGVKSKMLVSL 448
           AD DGFF VK+ MLV++
Sbjct: 435 ADKDGFFSVKNTMLVNV 451

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9279589|dbj|BAB01047.1| dihydrolipoamide S-acetyltransferase [Arabidopsis thaliana]

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 313/399 (78%), Positives = 336/399 (84%), Gaps = 4/399 (1%)

Query: 54  VQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILA 113
           V+SKIREIFMPALSSTMTEGKIVSWIK+EG+ L+KGESVVVVESDKADMDVETFYDG LA
Sbjct: 3   VRSKIREIFMPALSSTMTEGKIVSWIKTEGEKLAKGESVVVVESDKADMDVETFYDGYLA 62

Query: 114 AIVVPEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPK 173
           AIVV EGE+APVGAAIG+LAETEAE+ +AK+KAAS  +++ A   V S P    SP    
Sbjct: 63  AIVVGEGETAPVGAAIGLLAETEAEIEEAKSKAASKSSSSVAEAVVPSPPPVTSSPAPAI 122

Query: 174 KVAE---SAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSK 230
                  +   GPRKTVATPYAKKL KQHKVDI SV GTGPFGRIT  DVE AAGIAPSK
Sbjct: 123 AQPAPVTAVSDGPRKTVATPYAKKLAKQHKVDIESVAGTGPFGRITASDVETAAGIAPSK 182

Query: 231 SVAPSAAPAALPKPAPAAAPAAP-LLPGSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPI 289
           S      P   P  A A     P LLP S++VPFT MQ+AVSKNMIESLSVPTFRVGYP+
Sbjct: 183 SSIAPPPPPPPPVTAKATTTNLPPLLPDSSIVPFTAMQSAVSKNMIESLSVPTFRVGYPV 242

Query: 290 ITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVA 349
            TDALDALYEKVKPKGVTMTALLAKAA MAL QHPVVNASCKDGKSF+YN++INIAVAVA
Sbjct: 243 NTDALDALYEKVKPKGVTMTALLAKAAGMALAQHPVVNASCKDGKSFSYNSSINIAVAVA 302

Query: 350 INGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRF 409
           INGGLITPVLQDADKLDLYLLSQKWKELV KARSKQLQPHEYNSGTFTLSNLGMFGVDRF
Sbjct: 303 INGGLITPVLQDADKLDLYLLSQKWKELVGKARSKQLQPHEYNSGTFTLSNLGMFGVDRF 362

Query: 410 DAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSL 448
           DAILPPGQGAIMAVGASKPTVVAD DGFF VK+ MLV++
Sbjct: 363 DAILPPGQGAIMAVGASKPTVVADKDGFFSVKNTMLVNV 401

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099359|ref|XP_002311453.1| predicted protein [Populus trichocarpa] gi|222851273|gb|EEE88820.1| predicted protein [Populus trichocarpa]

 Score =  567 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 329/448 (73%), Positives = 370/448 (82%), Gaps = 19/448 (4%)

Query: 5   SPFLSKTPLSNTPTISFSSSISTPLKWKSITSFSPSGSSSSRSRRRIFIVQSKIREIFMP 64
           +PFLSKTP++N  +    S               PS  S  ++    F V +KIREIFMP
Sbjct: 4   TPFLSKTPINNFSSSLSPSLPL-----------LPSTLSHRKTNPNSFRVNAKIREIFMP 52

Query: 65  ALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAP 124
           ALSSTMTEGKIVSWIKSEGD+LSKGESVVVVESDKADMDVETFYDGILAAIVVPEGE+AP
Sbjct: 53  ALSSTMTEGKIVSWIKSEGDLLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGETAP 112

Query: 125 VGAAIGILAETEAEVAQAKAKAAS--AGAAAPASHPVTSTPVPAVSPPEPKKVAES--AP 180
           VGA IG+LAETE E+A+AKAKAAS  +G+  P +  VT TP P  +      ++++  AP
Sbjct: 113 VGAPIGLLAETEEEIAEAKAKAASKASGSTPPVAETVTPTPPPPATSTPAPAISQTPAAP 172

Query: 181 SGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAA 240
            GPRKT  TP+AKKL KQHKVDI+ VVGTGP+GR+TP DVE AAGIA SK   PS + AA
Sbjct: 173 EGPRKTTVTPFAKKLAKQHKVDISKVVGTGPYGRVTPADVEAAAGIAVSK---PSESLAA 229

Query: 241 LPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEK 300
             K A A++   P LPGS +VPFTTMQAAVSKNM+ESLSVPTFRVGYP+ITDALDA ++K
Sbjct: 230 TVKAA-ASSSVPPPLPGSNIVPFTTMQAAVSKNMVESLSVPTFRVGYPVITDALDAFHDK 288

Query: 301 VKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQ 360
           VKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYN++INIAVAVAINGGLITPVLQ
Sbjct: 289 VKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNSSINIAVAVAINGGLITPVLQ 348

Query: 361 DADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAI 420
           DADKLDLYLLS+KWKELVEKAR+KQLQPHEYNSGTFT+SNLGMFGVDRFDAILPPG GAI
Sbjct: 349 DADKLDLYLLSKKWKELVEKARAKQLQPHEYNSGTFTVSNLGMFGVDRFDAILPPGHGAI 408

Query: 421 MAVGASKPTVVADADGFFGVKSKMLVSL 448
           MAVGASKPTV+AD DGFF VK+KMLV++
Sbjct: 409 MAVGASKPTVLADKDGFFSVKNKMLVNV 436

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111700|ref|XP_002315946.1| predicted protein [Populus trichocarpa] gi|222864986|gb|EEF02117.1| predicted protein [Populus trichocarpa]

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 327/406 (80%), Positives = 350/406 (86%), Gaps = 18/406 (4%)

Query: 54  VQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILA 113
           VQ+KIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILA
Sbjct: 6   VQAKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILA 65

Query: 114 AIVVPEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPK 173
           AIVVPEGE+APVGA IG+LAETE E+A+AKAKAAS           +S+P   +SPP+  
Sbjct: 66  AIVVPEGETAPVGAPIGLLAETEEEIAEAKAKAASKAGG-------SSSPATPISPPDSS 118

Query: 174 ---------KVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAA 224
                      A +AP GPRKTVATP+AKKL +QHKVDIN VVGTGP+GRITP DVE AA
Sbjct: 119 TPAPAIPQPPPAPAAPEGPRKTVATPFAKKLARQHKVDINKVVGTGPYGRITPADVEAAA 178

Query: 225 GIAPSKSVAPSAAPAALPKPAPAAAPAAPL--LPGSTVVPFTTMQAAVSKNMIESLSVPT 282
           GIA SK    SA+PAA   P  AAA ++    LPGS VVPFT+MQ AVSKNM+ESLSVPT
Sbjct: 179 GIAVSKPSVSSASPAAAAAPVMAAASSSAPPPLPGSNVVPFTSMQGAVSKNMVESLSVPT 238

Query: 283 FRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANI 342
           FRVGYPI TDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYN+NI
Sbjct: 239 FRVGYPITTDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNSNI 298

Query: 343 NIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLG 402
           NIAVAVAINGGLITPVLQDADKLDLYLLS+KWKELVEKAR+KQLQP EYNSGTFTLSNLG
Sbjct: 299 NIAVAVAINGGLITPVLQDADKLDLYLLSKKWKELVEKARAKQLQPQEYNSGTFTLSNLG 358

Query: 403 MFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSL 448
           MFGVDRFDAILPPGQGAIMAVGASKPTVVAD DGFF VKSKMLV++
Sbjct: 359 MFGVDRFDAILPPGQGAIMAVGASKPTVVADKDGFFSVKSKMLVNV 404

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498274|ref|XP_003517978.1| PREDICTED: dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex-like [Glycine max]

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 332/447 (74%), Positives = 372/447 (83%), Gaps = 22/447 (4%)

Query: 5   SPFL-SKTPLSNTPTISFSSSISTPLKWKSITSFSPSGSSSSRSRRRIFIVQSKIREIFM 63
           SPFL +KT   N+ T+SFS+++  P +      F+ S S S R RR    V+SKIREIFM
Sbjct: 3   SPFLPAKT---NSATLSFSAAV--PGRR---LHFAASPSHSPR-RRSSLTVKSKIREIFM 53

Query: 64  PALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESA 123
           PALSSTMTEGKIVSW+KSEGDVLSKG+SVVVVESDKADMDVETFY+GILA IVV EG++A
Sbjct: 54  PALSSTMTEGKIVSWVKSEGDVLSKGDSVVVVESDKADMDVETFYNGILAVIVVAEGQTA 113

Query: 124 PVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGP 183
           PVGA IG+LAETEAEVA+A A A SA    P +   +  P PA   PE   V++S    P
Sbjct: 114 PVGAPIGLLAETEAEVAEAMAAANSAPTPPPKASDTSPAPAPA---PE---VSDS----P 163

Query: 184 RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKS-VAPSAAPAALP 242
           RK VATPYAKKL KQHKV+I SVVGTGPFGR+TP DVEKAAGI P++S VAP+A  +A P
Sbjct: 164 RKAVATPYAKKLAKQHKVNIGSVVGTGPFGRVTPADVEKAAGILPAESNVAPAAVDSAPP 223

Query: 243 KPAPAAAPAAPLLP-GSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKV 301
           K A AA  A+     GS+VV FTTMQ+AV+KNM+ESLSVPTFRVGYP+ TDALDALYEKV
Sbjct: 224 KAAAAAPAASSASIPGSSVVAFTTMQSAVAKNMVESLSVPTFRVGYPVTTDALDALYEKV 283

Query: 302 KPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQD 361
           + KGVTMTA+LAKAAAMALVQHPVVNASCKDGK+F YN+NINIAVAVA NGGLITPVLQD
Sbjct: 284 RKKGVTMTAILAKAAAMALVQHPVVNASCKDGKNFAYNSNINIAVAVATNGGLITPVLQD 343

Query: 362 ADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIM 421
           ADKLDLYLLSQKWKELVEKAR+KQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIM
Sbjct: 344 ADKLDLYLLSQKWKELVEKARAKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIM 403

Query: 422 AVGASKPTVVADADGFFGVKSKMLVSL 448
           AVGASKPTV+AD DGFF VKSKMLV++
Sbjct: 404 AVGASKPTVLADKDGFFTVKSKMLVNV 430

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575530|ref|XP_003555893.1| PREDICTED: dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex-like [Glycine max]

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 311/411 (75%), Positives = 342/411 (83%), Gaps = 12/411 (2%)

Query: 46  RSRRRIFIVQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVE 105
           R R   F VQ+KIREIFMPALSSTMTEGKIVSWIKSEGD+LSKG+SVVVVESDKADMDVE
Sbjct: 35  RRRASSFSVQAKIREIFMPALSSTMTEGKIVSWIKSEGDMLSKGDSVVVVESDKADMDVE 94

Query: 106 TFYDGILAAIVVPEGESAPVGAAIGILAET---EAEVAQAKAKAASAGAAAPASHPVTST 162
           TFYDGILAAIVV +GE+APVGA IG+LA++    AE     AK+  +G+ APAS    S 
Sbjct: 95  TFYDGILAAIVVADGETAPVGAPIGLLADSPEEVAEAKAKAAKSVPSGSPAPASPSDPSP 154

Query: 163 PVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEK 222
             P   PP  K V+E    GP K VATP AKKL KQHKVDI +V GTGPFGRITP DVE 
Sbjct: 155 ATPPPPPPPAKSVSE----GPAKIVATPQAKKLAKQHKVDIATVAGTGPFGRITPADVEA 210

Query: 223 AAGIAPSKS-----VAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES 277
           AAGIAPSK        P+ A  A P  A + + A   +PGS+VVPFTTMQ+AV+KNM+ES
Sbjct: 211 AAGIAPSKRNVAPAAIPAPATPAPPSKAASGSAAPAPIPGSSVVPFTTMQSAVAKNMMES 270

Query: 278 LSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFT 337
           LSVPTFRVGYP+ TDALDALYEKVKPKGVTMTA+LAKAAAMALVQHPVVNA+CKDGK+F 
Sbjct: 271 LSVPTFRVGYPVTTDALDALYEKVKPKGVTMTAILAKAAAMALVQHPVVNATCKDGKNFV 330

Query: 338 YNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFT 397
           YN NIN+AVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKAR+KQLQPHEYNSGTFT
Sbjct: 331 YNGNINVAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARAKQLQPHEYNSGTFT 390

Query: 398 LSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSL 448
           LSNLGMFGVDRFDAILPPGQGAIMAVGASKPTV+AD DGFF VK+KMLV++
Sbjct: 391 LSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVLADKDGFFSVKNKMLVNV 441

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	452
TAIR|locus:2092070	480	LTA2 "AT3G25860" [Arabidopsis	0.590	0.556	0.712	5.5e-128
TAIR|locus:2009273	465	EMB3003 "AT1G34430" [Arabidops	0.573	0.556	0.570	9.2e-107
GENEDB_PFALCIPARUM|PF10_0407	640	PF10_0407 "dihydrolipoamide ac	0.365	0.257	0.351	1.2e-43
UNIPROTKB|Q8IJJ4	640	PF10_0407 "Dihydrolipoamide ac	0.365	0.257	0.351	1.2e-43
TIGR_CMR|NSE_0953	403	NSE_0953 "pyruvate dehydrogena	0.384	0.431	0.349	5.3e-42
TIGR_CMR|SPO_2242	437	SPO_2242 "pyruvate dehydrogena	0.214	0.221	0.494	3.2e-39
ZFIN|ZDB-GENE-030131-2921	652	dlat "dihydrolipoamide S-acety	0.592	0.411	0.283	5.7e-35
WB|WBGene00009082	507	dlat-1 [Caenorhabditis elegans	0.557	0.497	0.290	9e-35
UNIPROTKB|P22439	501	PDHX "Pyruvate dehydrogenase p	0.418	0.377	0.302	4.1e-34
MGI|MGI:2385311	642	Dlat "dihydrolipoamide S-acety	0.418	0.294	0.289	1.7e-33

TAIR|locus:2092070 LTA2 "AT3G25860" [Arabidopsis thaliana (taxid:3702)]

 Score = 932 (333.1 bits), Expect = 5.5e-128, Sum P(2) = 5.5e-128
 Identities = 191/268 (71%), Positives = 199/268 (74%)

Query:   182 GPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIXXXXXXXXXXXXXXX 241
             GPRKTVATPYAKKL KQHKVDI SV GTGPFGRIT  DVE AAGI               
Sbjct:   182 GPRKTVATPYAKKLAKQHKVDIESVAGTGPFGRITASDVETAAGIAPSKSSIAPPPPPPP 241

Query:   242 XXXXXXXXXXXXXXX-GSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEK 300
                              S++VPFT MQ+AVSKNMIESLSVPTFRVGYP+ TDALDALYEK
Sbjct:   242 PVTAKATTTNLPPLLPDSSIVPFTAMQSAVSKNMIESLSVPTFRVGYPVNTDALDALYEK 301

Query:   301 VKPKGVTMTXXXXXXXXXXXVQHPVVNASCKDGKSFTYXXXXXXXXXXXXXGGLITPVLQ 360
             VKPKGVTMT            QHPVVNASCKDGKSF+Y             GGLITPVLQ
Sbjct:   302 VKPKGVTMTALLAKAAGMALAQHPVVNASCKDGKSFSYNSSINIAVAVAINGGLITPVLQ 361

Query:   361 DADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAI 420
             DADKLDLYLLSQKWKELV KARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAI
Sbjct:   362 DADKLDLYLLSQKWKELVGKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAI 421

Query:   421 MAVGASKPTVVADADGFFGVKSKMLVSL 448
             MAVGASKPTVVAD DGFF VK+ MLV++
Sbjct:   422 MAVGASKPTVVADKDGFFSVKNTMLVNV 449

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=ISS;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=TAS

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

TAIR|locus:2009273 EMB3003 "AT1G34430" [Arabidopsis thaliana (taxid:3702)]

 Score = 745 (267.3 bits), Expect = 9.2e-107, Sum P(2) = 9.2e-107
 Identities = 154/270 (57%), Positives = 184/270 (68%)

Query:   179 APSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIXXXXXXXXXXXX 238
             A  G ++ VA+PYAKKL K+ KV++  +VG+GP GRI  +DVE  A              
Sbjct:   176 ASEGGKRIVASPYAKKLAKELKVELAGLVGSGPMGRIVAKDVEAVAA----------GGG 225

Query:   239 XXXXXXXXXXXXXXXXXXGSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALY 298
                               GS VVPFTTMQ AVS+NM+ESL VPTFRVGY I TDALDALY
Sbjct:   226 VQAAVAVKEVVAAPGVELGS-VVPFTTMQGAVSRNMVESLGVPTFRVGYTISTDALDALY 284

Query:   299 EKVKPKGVTMTXXXXXXXXXXXVQHPVVNASCKDGKSFTYXXXXXXXXXXXXXGGLITPV 358
             +K+K KGVTMT            +HPVVN+SC+DG SF Y             GGLITPV
Sbjct:   285 KKIKSKGVTMTALLAKATALALAKHPVVNSSCRDGNSFVYNSSINVAVAVAIDGGLITPV 344

Query:   359 LQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQG 418
             LQ+ADK+D+Y LS+KWKELV+KAR+KQLQP EYN+GTFTLSNLGMFGVDRFDAILPPG G
Sbjct:   345 LQNADKVDIYSLSRKWKELVDKARAKQLQPQEYNTGTFTLSNLGMFGVDRFDAILPPGTG 404

Query:   419 AIMAVGASKPTVVADADGFFGVKSKMLVSL 448
             AIMAVGAS+P+VVA  DG  G+K++M V++
Sbjct:   405 AIMAVGASQPSVVATKDGRIGMKNQMQVNV 434

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GENEDB_PFALCIPARUM|PF10_0407 PF10_0407 "dihydrolipoamide acetyltransferase, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 265 (98.3 bits), Expect = 1.2e-43, Sum P(3) = 1.2e-43
 Identities = 59/168 (35%), Positives = 90/168 (53%)

Query:   261 VPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTXXXXXXXXXXX 320
             V  T +Q ++  NM+ +L+VP FRV + I T+ L  LYEKVK K ++M+           
Sbjct:   422 VDMTNIQKSIKNNMMLTLTVPVFRVTHLIKTNELLKLYEKVKQK-ISMSVIINKCVSSVL 480

Query:   321 VQHPVVNASC--KDGKSFTYXXXXXXXXXXXXXGGLITPVLQDADKLDLYLLSQKWKELV 378
             + HP++ ++   KD     Y               L+TPVL+  DK D+Y L+ +WK LV
Sbjct:   481 LNHPLIYSTYIDKDNGKILYNKDVNIGNALGLPDSLLTPVLKKVDKKDIYTLANEWKILV 540

Query:   379 EKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGAS 426
             EK ++  L  ++     F +SNLGMF   +FDAILP     I+++G +
Sbjct:   541 EKGKNGLLSSNDMTGSNFYISNLGMFNTYQFDAILPKNSSCILSIGTN 588

GO:0020011 "apicoplast" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISS

UNIPROTKB|Q8IJJ4 PF10_0407 "Dihydrolipoamide acyltransferase, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 265 (98.3 bits), Expect = 1.2e-43, Sum P(3) = 1.2e-43
 Identities = 59/168 (35%), Positives = 90/168 (53%)

Query:   261 VPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTXXXXXXXXXXX 320
             V  T +Q ++  NM+ +L+VP FRV + I T+ L  LYEKVK K ++M+           
Sbjct:   422 VDMTNIQKSIKNNMMLTLTVPVFRVTHLIKTNELLKLYEKVKQK-ISMSVIINKCVSSVL 480

Query:   321 VQHPVVNASC--KDGKSFTYXXXXXXXXXXXXXGGLITPVLQDADKLDLYLLSQKWKELV 378
             + HP++ ++   KD     Y               L+TPVL+  DK D+Y L+ +WK LV
Sbjct:   481 LNHPLIYSTYIDKDNGKILYNKDVNIGNALGLPDSLLTPVLKKVDKKDIYTLANEWKILV 540

Query:   379 EKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGAS 426
             EK ++  L  ++     F +SNLGMF   +FDAILP     I+++G +
Sbjct:   541 EKGKNGLLSSNDMTGSNFYISNLGMFNTYQFDAILPKNSSCILSIGTN 588

GO:0005739 "mitochondrion" evidence=ISS

GO:0020011 "apicoplast" evidence=IDA

TIGR_CMR|NSE_0953 NSE_0953 "pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 263 (97.6 bits), Expect = 5.3e-42, Sum P(3) = 5.3e-42
 Identities = 64/183 (34%), Positives = 102/183 (55%)

Query:   259 TVVPFTTMQAAVSKNMIESL-SVPTFRVGYPI----ITDALDALYEKVKPKGVTMTXXXX 313
             T +P + M+  +++ ++ES  +VP F +        +  A    Y+ ++ K VT+     
Sbjct:   182 TSIPISPMRRVIAQRLVESKQNVPHFYLSVTCYLQHLLSAKKKFYDCLETK-VTVNDFVI 240

Query:   314 XXXXXXXVQHPVVNASCKDGKSFTYXXXXXXXXXXXXXGGLITPVLQDADKLDLYLLSQK 373
                     ++P +N S  +G+                  GLITP++  ADKL L  +S +
Sbjct:   241 KACAFALDKNPAMNVSW-EGEFIRQNQTIDISVAVAIPDGLITPIVFSADKLSLSSISDE 299

Query:   374 WKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASK--PTVV 431
              +ELV+KA++ +LQP E+  G+FT+SNLGM+G+D F AI+ P Q AI+AVGA++  PTV 
Sbjct:   300 VRELVDKAKAGRLQPREFQGGSFTVSNLGMYGIDEFTAIINPPQAAILAVGAARKVPTVS 359

Query:   432 ADA 434
             ADA
Sbjct:   360 ADA 362

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=ISS

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISS

GO:0045254 "pyruvate dehydrogenase complex" evidence=ISS

TIGR_CMR|SPO_2242 SPO_2242 "pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 238 (88.8 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
 Identities = 48/97 (49%), Positives = 63/97 (64%)

Query:   352 GGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDA 411
             GGL TPVL+DAD   L  LS + K+L  +AR ++L PHEY  G+F +SNLGMFG+D FDA
Sbjct:   310 GGLFTPVLKDADMKSLSALSTEMKDLATRARDRKLAPHEYQGGSFAISNLGMFGIDNFDA 369

Query:   412 ILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSL 448
             I+ P    I+AVG+     V  ADG   V + M V++
Sbjct:   370 IVNPPHAGILAVGSGVKKPVVGADGELTVATVMSVTM 406

GO:0004738 "pyruvate dehydrogenase activity" evidence=ISS

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=ISS

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISS

GO:0045250 "cytosolic pyruvate dehydrogenase complex" evidence=ISS

ZFIN|ZDB-GENE-030131-2921 dlat "dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)" [Danio rerio (taxid:7955)]

 Score = 271 (100.5 bits), Expect = 5.7e-35, Sum P(2) = 5.7e-35
 Identities = 80/282 (28%), Positives = 131/282 (46%)

Query:   178 SAPSGPRK--TVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIXXXXXXXXX 235
             +AP+  RK    A+P AKKL  +  VDI  V GTGP GR+T +D++    +         
Sbjct:   343 AAPAAARKGRVFASPLAKKLAAEKGVDITQVTGTGPDGRVTKKDIDSF--VPPKLTPAAA 400

Query:   236 XXXXXXXXXXXXXXXXXXXXXGS-TVVPFTTMQAAVSKNMIESL-SVPTFRVGYPIITDA 293
                                  G+ T VP + ++  +++ +++S  ++P + +   +  D 
Sbjct:   401 AAPSAPTPSPPAAPAYAAVPTGTFTDVPISNIRKVIAQRLMQSKQTIPHYYLSIDVNMDQ 460

Query:   294 L----DALYEKVKPKGVTMTXXXXXXXXXXX--VQHPVVNASCKDGKSFTYXXXXXXXXX 347
             +      L  +VK + + ++             ++ P  N+S  D               
Sbjct:   461 VLELRKELNAEVKAENIKLSVNDFIIKASALACLKVPEANSSWMD-TVIRQNHVVDVSVA 519

Query:   348 XXXXGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVD 407
                  GLITP++ +A    L  +S+    L  KAR  +LQPHE+  GTFT+SNLGM+G+ 
Sbjct:   520 VSTPVGLITPIVFNAHIKGLANISKDVSALAAKARDGKLQPHEFQGGTFTISNLGMYGIK 579

Query:   408 RFDAILPPGQGAIMAVGASKPTVV-ADADGFFGVKSKMLVSL 448
              F AI+ P Q  I+AVG S+  ++ AD +  F V + M V+L
Sbjct:   580 HFSAIINPPQACILAVGGSEKRLLPADNEKGFDVANMMSVTL 621

GO:0045254 "pyruvate dehydrogenase complex" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA;IMP

GO:0004738 "pyruvate dehydrogenase activity" evidence=IMP

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=IMP

GO:0050908 "detection of light stimulus involved in visual perception" evidence=IMP

GO:0016740 "transferase activity" evidence=IEA

GO:0009583 "detection of light stimulus" evidence=IMP

WB|WBGene00009082 dlat-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 247 (92.0 bits), Expect = 9.0e-35, Sum P(2) = 9.0e-35
 Identities = 84/289 (29%), Positives = 133/289 (46%)

Query:   177 ESAP---SGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIXXXXXXX 233
             +SAP   S   +  A+P+AKKL  ++ +D++ V G+GP GRI   D+ +A          
Sbjct:   208 KSAPIPHSSSGRVSASPFAKKLAAENGLDLSGVSGSGPGGRILASDLSQAPA-------- 259

Query:   234 XXXXXXXXXXXXXXXXXXXXXXXGSTVVPFTTMQAAVSKNMIESLS-VPTFRVGYPIITD 292
                                      T +P + M+  ++K + ES S +P + +   I  D
Sbjct:   260 ---------KGATSTTTQAVSGQDYTDIPLSNMRKTIAKRLTESKSTIPHYYLTSEIQLD 310

Query:   293 ALDALYEKVK---PKG-------VTMTXXXXXXXXXXXVQHPVVNASCKDGKSFTYXXXX 342
              L  + EK+     KG       +++             + P  N+   D  SF      
Sbjct:   311 TLLQVREKLNGLLAKGTSGQATKISINDFIIKASALACQRVPEANSYWMD--SFIRENHH 368

Query:   343 XXXXXXXXX-GGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNL 401
                        GLITP++ +A    L  ++ +  EL ++AR  +LQPHE+  GTFT+SNL
Sbjct:   369 VDVSVAVSTPAGLITPIIFNAHAKGLATIASEIVELAQRAREGKLQPHEFQGGTFTVSNL 428

Query:   402 GMFG-VDRFDAILPPGQGAIMAVGASKPTVVAD-ADGFFGVKSKMLVSL 448
             GMFG V  F AI+ P Q  I+A+G +   +V D A+G+  +K+ M V+L
Sbjct:   429 GMFGSVSDFTAIINPPQSCILAIGGASDKLVPDEAEGYKKIKT-MKVTL 476

GO:0008152 "metabolic process" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0045254 "pyruvate dehydrogenase complex" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

UNIPROTKB|P22439 PDHX "Pyruvate dehydrogenase protein X component" [Bos taurus (taxid:9913)]

 Score = 215 (80.7 bits), Expect = 4.1e-34, Sum P(3) = 4.1e-34
 Identities = 59/195 (30%), Positives = 95/195 (48%)

Query:   259 TVVPFTTMQAAVSKNMIESLS-VP-TFRVGYPIITDALDALYEKVKPK-GVTMTXXXXXX 315
             T +P + ++  ++K + ES S +P  +      +   L A    V+    V++       
Sbjct:   276 TEIPASNIRRVIAKRLTESKSTIPHAYATTDCDLGAVLTARQNLVRDDIKVSVNDFIIKA 335

Query:   316 XXXXXVQHPVVNASCKDGKSFTYXXXXXXXXXXXXXGGLITPVLQDADKLDLYLLSQKWK 375
                   Q P VNAS  DG+                  GLITPV++DA    L  ++   K
Sbjct:   336 AAVTLKQMPNVNASW-DGEGAKQLPSIDISVAVATDRGLITPVIKDAAAKGLQEIADSVK 394

Query:   376 ELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTV--VAD 433
              L +KAR  +L P EY  G+F++SNLGMFG+D F A++ P Q  I+AVG  +P +    D
Sbjct:   395 ALSKKARDGKLLPEEYQGGSFSISNLGMFGIDEFTAVINPPQACILAVGRFRPVLKLTQD 454

Query:   434 ADGFFGVKSKMLVSL 448
              +G   ++ + L+++
Sbjct:   455 EEGNAQLQQRQLITV 469

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

MGI|MGI:2385311 Dlat "dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)" [Mus musculus (taxid:10090)]

 Score = 212 (79.7 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
 Identities = 57/197 (28%), Positives = 100/197 (50%)

Query:   259 TVVPFTTMQAAVSKNMIESL-SVPTFRVGYPI-ITDAL---DALYEKVKPKG-VTMTXXX 312
             T +P + ++  +++ +++S  ++P + +   + + + L     L + ++ KG +++    
Sbjct:   416 TDIPISNIRRVIAQRLMQSKQTIPHYYLSVDVNMGEVLLVRKELNKMLEGKGKISVNDFI 475

Query:   313 XXXXXXXXVQHPVVNASCKDGKSFTYXXXXXXXXXXXXXGGLITPVLQDADKLDLYLLSQ 372
                     ++ P  N+S  D                    GLITP++ +A    L  ++ 
Sbjct:   476 IKASALACLKVPEANSSWMD-TVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGLETIAS 534

Query:   373 KWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVV- 431
                 L  KAR  +LQPHE+  GTFT+SNLGMFG+  F AI+ P Q  I+A+GAS+  ++ 
Sbjct:   535 DVVSLASKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLIP 594

Query:   432 ADADGFFGVKSKMLVSL 448
             AD +  F V S M V+L
Sbjct:   595 ADNEKGFDVASVMSVTL 611

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=ISO;TAS

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005967 "mitochondrial pyruvate dehydrogenase complex" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISO;IC

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0008152 "metabolic process" evidence=TAS

GO:0016740 "transferase activity" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0045254 "pyruvate dehydrogenase complex" evidence=ISO;TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O66119	ODP2_ZYMMO	2, ., 3, ., 1, ., 1, 2	0.3308	0.8119	0.8340	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.1	0.766
3rd Layer	2.3.1.12	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	452
PRK11856	411	PRK11856, PRK11856, branched-chain alpha-keto acid	1e-134
COG0508	404	COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogena	4e-93
TIGR01349	436	TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase	2e-79
PLN02744	539	PLN02744, PLN02744, dihydrolipoyllysine-residue ac	3e-70
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	7e-62
pfam00198	212	pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases	1e-53
PRK05704	407	PRK05704, PRK05704, dihydrolipoamide succinyltrans	4e-49
TIGR01347	403	TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp	5e-49
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	6e-47
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	7e-47
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	1e-35
PLN02528	416	PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase	6e-35
PRK14843	347	PRK14843, PRK14843, dihydrolipoamide acetyltransfe	2e-34
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	4e-29
cd06849	74	cd06849, lipoyl_domain, Lipoyl domain of the dihyd	2e-26
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	4e-24
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	7e-24
PRK11857	306	PRK11857, PRK11857, dihydrolipoamide acetyltransfe	4e-23
PRK14875	371	PRK14875, PRK14875, acetoin dehydrogenase E2 subun	3e-20
PLN02226	463	PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E	2e-19
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	8e-17
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	1e-13
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	3e-12
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	4e-12
pfam00364	73	pfam00364, Biotin_lipoyl, Biotin-requiring enzyme	6e-12
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	2e-11
cd06663	73	cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_	2e-10
pfam02817	39	pfam02817, E3_binding, e3 binding domain	2e-10
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-06
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-05
cd06850	67	cd06850, biotinyl_domain, The biotinyl-domain or b	1e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-05
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	4e-05
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	5e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	2e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-04
COG0511	140	COG0511, AccB, Biotin carboxyl carrier protein [Li	0.001
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	0.002
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.002
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.002
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.003

>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

 Score =  392 bits (1010), Expect = e-134
 Identities = 154/394 (39%), Positives = 220/394 (55%), Gaps = 19/394 (4%)

Query: 58  IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVV 117
           + E  MP L   MTEG+IV W+   GD + +G+ +  VE+DKA +++ +   G +A ++V
Sbjct: 2   MFEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLV 61

Query: 118 PEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAE 177
            EG+  PVG+ I ++ E     A     AA+A AA  A  P  +    A +   P   A 
Sbjct: 62  EEGDVVPVGSVIAVIEEEGEAEA-----AAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAA 116

Query: 178 SAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAA 237
            A        A+P  +KL ++  VD+++V G+GP GRIT EDVE AA          +AA
Sbjct: 117 PAAPAAAAAKASPAVRKLARELGVDLSTVKGSGPGGRITKEDVEAAAA---------AAA 167

Query: 238 PAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDA 296
           PAA    A AAAP A    G   VP + M+ A++K M+ES   +P F +   +   AL A
Sbjct: 168 PAAAAAAAAAAAPPAAAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTALLA 227

Query: 297 LYEKVKP--KGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGL 354
           L +++K     +T+T  L KA A+AL + P +NAS  D  +      +NI +AVA +GGL
Sbjct: 228 LRKQLKAIGVKLTVTDFLIKAVALALKKFPELNASW-DDDAIVLKKYVNIGIAVATDGGL 286

Query: 355 ITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILP 414
           I PV++DADK  L+ L+++ K+L EKAR  +L+P E   GTFT+SNLGMFG D F  I+ 
Sbjct: 287 IVPVIRDADKKSLFELAREIKDLAEKAREGKLKPEELQGGTFTISNLGMFGGDYFTPIIN 346

Query: 415 PGQGAIMAVGASKPTVVADADGFFGVKSKMLVSL 448
           P + AI+ VGA     V   DG   V+  M +SL
Sbjct: 347 PPEVAILGVGAIVERPVVV-DGEIVVRKVMPLSL 379

Length = 411

>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

 Score =  286 bits (735), Expect = 4e-93
 Identities = 147/402 (36%), Positives = 207/402 (51%), Gaps = 36/402 (8%)

Query: 58  IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVV 117
             EI MP L  TMTEG IV W+K  GD + +G+ +V VE+DKA M+V     G+LA I+V
Sbjct: 2   AIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILV 61

Query: 118 PEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAE 177
            EG++ PVGA I  + E               GA APA+      P  A     P   A 
Sbjct: 62  EEGDTVPVGAVIARIEE--------------EGADAPAAAEAPPEPAAAAPASAPATAAS 107

Query: 178 SAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAA 237
           +A        A+P  ++L ++  +D++ V GTGP GRIT +DVE A           +  
Sbjct: 108 AAAGRVL---ASPAVRRLAREAGIDLSKVKGTGPGGRITKKDVEAAV----------AEK 154

Query: 238 PAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDA 296
            AA   PAPAAA  A        VP + ++ A+++ M+ES  ++P   +   +    L A
Sbjct: 155 AAAAAAPAPAAAAPASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMA 214

Query: 297 LYEKVKP------KGVTMTALLAKAAAMALVQHPVVNASC-KDGKSFTYNANINIAVAVA 349
           L +K+K         +T  + L KA   AL + P VNAS   DG+   Y+  +NI +AV 
Sbjct: 215 LRKKLKEEFEKKGVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVD 274

Query: 350 INGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRF 409
              GL+ PV++DADK  L  ++++ K+L +KAR  +L P E   GTFT+SNLGMFG   F
Sbjct: 275 TPRGLVVPVIRDADKKSLAEIAKEIKDLAKKARDGKLTPEEMQGGTFTISNLGMFGSLMF 334

Query: 410 DAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLISI 451
             I+ P Q AI+ VGA +   V    G   V+  M +SL   
Sbjct: 335 TPIINPPQVAILGVGAIEERPVVV-GGEIVVRPMMYLSLSYD 375

Length = 404

>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score =  252 bits (646), Expect = 2e-79
 Identities = 148/414 (35%), Positives = 223/414 (53%), Gaps = 34/414 (8%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           +I MPALS TMT G +  W+K EGD ++ G+ +  +E+DKA M+ E   +G LA I+VPE
Sbjct: 1   KITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPE 60

Query: 120 G-ESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEP-----K 173
           G +  PV   I +L E + +VA A        +A+PA  P    P    S P+P     K
Sbjct: 61  GTKDVPVNKPIAVLVEEKEDVADAFKNYKLESSASPAPKPSEIAPTAPPSAPKPSPAPQK 120

Query: 174 KVAESAPS-------GPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGI 226
           +  E +            +  A+P AKKL K+  +D+++V G+GP GRI  +D+E     
Sbjct: 121 QSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVAGSGPNGRIVKKDIESF--- 177

Query: 227 APSKSVAPSAAPAALPKPAPAAAPAAPLLPGS-TVVPFTTMQAAVSKNMIES-LSVPTFR 284
              +S A +   AA   P      AAP+  GS   VP + ++  ++K ++ES  ++P + 
Sbjct: 178 -VPQSPASANQQAAATTP-ATYPAAAPVSTGSYEDVPLSNIRKIIAKRLLESKQTIPHYY 235

Query: 285 VGYPIITDALDAL--------YEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSF 336
           V      D L AL         E  K   +++   + KA+A+AL + P  N+S  D    
Sbjct: 236 VSIECNVDKLLALRKELNAMASEVYK---LSVNDFIIKASALALREVPEANSSWTD-NFI 291

Query: 337 TYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTF 396
               N++I+VAVA   GLITP++++AD   L  +S + K+L ++AR+ +L+P E+  GTF
Sbjct: 292 RRYKNVDISVAVATPDGLITPIVRNADAKGLSTISNEIKDLAKRARNNKLKPEEFQGGTF 351

Query: 397 TLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVV--ADADGFFGVKSKMLVSL 448
           T+SNLGMFG+  F AI+ P Q  I+AVGA +   V   D +  F V S M V+L
Sbjct: 352 TISNLGMFGIKDFTAIINPPQACILAVGAVEDVAVVDNDEEKGFAVASIMSVTL 405

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score [Energy metabolism, Pyruvate dehydrogenase]. Length = 436

>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

 Score =  231 bits (591), Expect = 3e-70
 Identities = 150/406 (36%), Positives = 214/406 (52%), Gaps = 26/406 (6%)

Query: 59  REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVP 118
           +EI MP+LS TMTEG I  W+K EGD +S GE +  VE+DKA +++E   +G LA IV  
Sbjct: 113 QEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKG 172

Query: 119 EG-ESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAV-------SPP 170
           +G +   VG  I I  E E ++ + K    S+ AA  A     S P P         S P
Sbjct: 173 DGAKEIKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSP 232

Query: 171 EPK-KVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPS 229
           EPK     + PS   +  A+P A+KL + + V ++S+ GTGP GRI   D+E        
Sbjct: 233 EPKASKPSAPPSSGDRIFASPLARKLAEDNNVPLSSIKGTGPDGRIVKADIEDY------ 286

Query: 230 KSVAPSAAPAALPKPAPAAAPAAPL--LPGSTVVPFTTMQAAVSKNMIES--LSVPTFRV 285
             +A     A  P    + APA     +P + +   T  +   SK  I    L+V T RV
Sbjct: 287 --LASGGKGATAPPSTDSKAPALDYTDIPNTQIRKVTASRLLQSKQTIPHYYLTVDT-RV 343

Query: 286 GYPI-ITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINI 344
              + +   L++L E    K +++  L+ KAAA+AL + P  N+S  D     Y+ N+NI
Sbjct: 344 DKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWTDDYIRQYH-NVNI 402

Query: 345 AVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNL-GM 403
            VAV    GL  PV++DADK  L  ++++ K+L +KAR   L+P +Y  GTFT+SNL G 
Sbjct: 403 NVAVQTENGLYVPVVKDADKKGLSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSNLGGP 462

Query: 404 FGVDRFDAILPPGQGAIMAVG-ASKPTVVADADGFFGVKSKMLVSL 448
           FG+ +F AI+ P Q AI+AVG A K  +       +   S M V+L
Sbjct: 463 FGIKQFCAIINPPQSAILAVGSAEKRVIPGSGPDQYNFASFMSVTL 508

Length = 539

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score =  209 bits (535), Expect = 7e-62
 Identities = 126/414 (30%), Positives = 196/414 (47%), Gaps = 35/414 (8%)

Query: 56  SKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAI 115
             + E+ +P +   +TE +++ W+   GD + + +S++ VE+DKA M++ +   G++  I
Sbjct: 117 GGVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEI 175

Query: 116 VVPEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKV 175
            V  G+   VG+ + ++   E   A   A AA A AA  A+      P PA +       
Sbjct: 176 KVKVGDKVSVGSLLVVI---EVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAA 232

Query: 176 AESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPS 235
             +A +  +   A+P  ++L ++  VD++ V GTG  GRIT EDV+        K    +
Sbjct: 233 PAAAAAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGRITKEDVQAFV-----KGAMSA 287

Query: 236 AAPAALPKPAPAAAPAAPLLPGSTV----------VPFTTMQAAVSKNMIESLS-VPTFR 284
           AA AA    A A      LLP   V           P + ++   + N+  S   +P   
Sbjct: 288 AAAAA-AAAAAAGGGGLGLLPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVT 346

Query: 285 VGYPI-ITDALDALYEKVKP----KGV--TMTALLAKAAAMALVQHPVVNASC-KDGKSF 336
                 ITD L+AL +++K      GV  TM     KA   AL + PV NAS  +DG   
Sbjct: 347 QFDEADITD-LEALRKQLKKEAEKAGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDEL 405

Query: 337 TYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTF 396
           TY    NI  AV    GL+ PV++D DK  L  ++++  EL +KAR  +L+P +   G F
Sbjct: 406 TYKKYFNIGFAVDTPNGLVVPVIKDVDKKSLLEIAREIAELAKKARDGKLKPDDMQGGCF 465

Query: 397 TLSNLGMFGVDRFDAILPPGQGAIMAVGAS--KPTVVADADGFFGVKSKMLVSL 448
           T+S+LG  G   F  I+   + AI+ VG S  KP         F  +  + +SL
Sbjct: 466 TISSLGGIGGTAFTPIINAPEVAILGVGKSQMKP---VWDGKEFVPRLMLPLSL 516

Length = 547

>gnl|CDD|215782 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase (catalytic domain)

 Score =  178 bits (453), Expect = 1e-53
 Identities = 71/182 (39%), Positives = 102/182 (56%), Gaps = 8/182 (4%)

Query: 274 MIESL-SVPTFRVGYPIITDALDALYEKVKPKG------VTMTALLAKAAAMALVQHPVV 326
           M ES  ++P F +   +   AL AL EK+K         +T    L KA A+AL + P +
Sbjct: 1   MTESKQTIPHFTLTDEVDVTALLALREKLKEDAKKEGLKLTFLDFLVKAVALALKEFPEL 60

Query: 327 NASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQL 386
           NAS        Y   +NI +AVA   GLI PV+++AD+  L  ++++ K+L E+AR  +L
Sbjct: 61  NASWDGDAEIVYKKYVNIGIAVATPDGLIVPVIRNADRKSLLEIAKEIKDLAERARDGKL 120

Query: 387 QPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLV 446
           +P +   GTFT+SNLGMFGV  F  I+ P Q AI+ VGA +   V   DG   ++  M +
Sbjct: 121 KPEDLQGGTFTISNLGMFGVTFFTPIINPPQVAILGVGAIRKRPVV-VDGEIVIRKVMPL 179

Query: 447 SL 448
           SL
Sbjct: 180 SL 181

These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain. Length = 212

>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated

 Score =  172 bits (438), Expect = 4e-49
 Identities = 120/387 (31%), Positives = 182/387 (47%), Gaps = 67/387 (17%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           EI +P L  ++TE  I +W K  GD + + E +V +E+DK  ++V     G+L+ I+  E
Sbjct: 4   EIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEE 63

Query: 120 GESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESA 179
           G++  VG  +G + E            A+AGAAA A+         A +   P +   +A
Sbjct: 64  GDTVTVGQVLGRIDE-----------GAAAGAAAAAAAA------AAAAAAAPAQAQAAA 106

Query: 180 PSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPA 239
            +       +P A+KL  ++ +D ++V GTG  GR+T EDV  A   A +   AP+A  A
Sbjct: 107 AAEQSNDALSPAARKLAAENGLDASAVKGTGKGGRVTKEDVLAALAAAAA---APAAPAA 163

Query: 240 ALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDA-LDALY 298
           A P  APA   A P       VP T ++  +++ ++E+ +           T A L    
Sbjct: 164 AAPAAAPAPLGARP----EERVPMTRLRKTIAERLLEAQN-----------TTAMLTTFN 208

Query: 299 EKVKPKGVTMTALLA------------------------KAAAMALVQHPVVNASCKDGK 334
           E      V MT ++                         KA   AL ++P VNAS  DG 
Sbjct: 209 E------VDMTPVMDLRKQYKDAFEKKHGVKLGFMSFFVKAVVEALKRYPEVNASI-DGD 261

Query: 335 SFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSG 394
              Y+   +I +AV    GL+ PVL+DAD+L    + +K  EL +KAR  +L   E   G
Sbjct: 262 DIVYHNYYDIGIAVGTPRGLVVPVLRDADQLSFAEIEKKIAELAKKARDGKLSIEELTGG 321

Query: 395 TFTLSNLGMFGVDRFDAILPPGQGAIM 421
           TFT++N G+FG      I+ P Q AI+
Sbjct: 322 TFTITNGGVFGSLMSTPIINPPQSAIL 348

Length = 407

>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

 Score =  171 bits (436), Expect = 5e-49
 Identities = 110/373 (29%), Positives = 181/373 (48%), Gaps = 41/373 (10%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           EI +P L+ ++TEG +  W K  GD + + E++V +E+DK  ++V +  DG+L  I+  E
Sbjct: 2   EIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKE 61

Query: 120 GESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESA 179
           G++   G  + IL E              A AA PA                    A + 
Sbjct: 62  GDTVESGQVLAILEE-----------GNDATAAPPAKSG------EEKEETPAASAAAAP 104

Query: 180 PSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPA 239
            +   +   +P A++L K+H +D+++V GTG  GR+T ED+ K              APA
Sbjct: 105 TAAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGRVTKEDIIKKT-----------EAPA 153

Query: 240 ALPKPAPAAAPAAPLLPGSTV--VPFTTMQAAVSKNMIES----LSVPTF-RVGYPIITD 292
           +  +PAPAAA  AP         V  T ++  +++ + E+      + TF  V    + +
Sbjct: 154 SAQQPAPAAAAKAPANFTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVME 213

Query: 293 ALDALYEKV--KPKGVTM--TALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAV 348
            L   Y++   K  GV +   +   KA   AL + P VNA   DG    Y    +I+VAV
Sbjct: 214 -LRKRYKEEFEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEI-DGDDIVYKDYYDISVAV 271

Query: 349 AINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDR 408
           + + GL+ PV+++AD++    + ++  +L +KAR  +L   +   GTFT++N G+FG   
Sbjct: 272 STDRGLVVPVVRNADRMSFADIEKEIADLGKKARDGKLTLEDMTGGTFTITNGGVFGSLM 331

Query: 409 FDAILPPGQGAIM 421
              I+ P Q AI+
Sbjct: 332 STPIINPPQSAIL 344

This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase [Energy metabolism, TCA cycle]. Length = 403

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score =  170 bits (434), Expect = 6e-47
 Identities = 109/402 (27%), Positives = 168/402 (41%), Gaps = 51/402 (12%)

Query: 54  VQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILA 113
             + ++++ +P +     E ++   +   GD +   +S++ VE DKA M+V   + G + 
Sbjct: 202 AAAGVKDVNVPDIGGD--EVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVK 259

Query: 114 AIVVPEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTS-TPVPAVSPPEP 172
            I V  G+    G+ I        EV  A   AA A   A A  P  +    PA +P   
Sbjct: 260 EIKVNVGDKVKTGSLIMRF-----EVEGAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAK 314

Query: 173 KKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSV 232
            +             ATP  ++L ++  V++  V GTG  GRI  EDV+     A     
Sbjct: 315 AEGKSEFAENDAYVHATPLVRRLAREFGVNLAKVKGTGRKGRILKEDVQAYVKDA---VK 371

Query: 233 APSAAPAALPKPAPAAAPAAPLLPGSTV----------VPFTTMQAAVSKNMIESL---- 278
              AAPAA    A A      LLP   V          V    +Q     N+  +     
Sbjct: 372 RAEAAPAA----AAAGGGGPGLLPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIP 427

Query: 279 -----------SVPTFRVGYPIITDALDALYEKVKPKGVTMTAL--LAKAAAMALVQHPV 325
                       +  FR          +A  EK +  GV +T L  + KA A AL Q P 
Sbjct: 428 HVTQFDKADITELEAFRK-------QQNAEAEK-RKLGVKITPLVFIMKAVAAALEQMPR 479

Query: 326 VNAS-CKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSK 384
            N+S  +DG+  T    +NI +AV    GL+ PV +D +K  +  LS++  ++ +KAR  
Sbjct: 480 FNSSLSEDGQRLTLKKYVNIGIAVDTPNGLVVPVFKDVNKKGIIELSRELMDISKKARDG 539

Query: 385 QLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGAS 426
           +L   +   G FT+S++G  G   F  I+   + AI+ V  S
Sbjct: 540 KLTAGDMQGGCFTISSIGGLGTTHFTPIVNAPEVAILGVSKS 581

Length = 633

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score =  170 bits (431), Expect = 7e-47
 Identities = 135/405 (33%), Positives = 195/405 (48%), Gaps = 29/405 (7%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           E+ MP L  ++TEG + SW+K+ GD +   E ++ V +DK D ++ +   G L  I  PE
Sbjct: 128 EVKMPELGESVTEGTVTSWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLEIRAPE 187

Query: 120 GESAPVGAAIGILAETEA-------EVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEP 172
            ++  VG  + I+ +  A       E A A ++A S  A  PA+    + P P    P P
Sbjct: 188 DDTVEVGTVLAIIGDANAAPAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAP 247

Query: 173 KKVAESAPSGPRKTVA-----TPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIA 227
            K A  A + P  +       TP  +KL K   VD+++V GTG  GRI  +DV  AA  A
Sbjct: 248 AKTAAPAAAAPVSSGDSGPYVTPLVRKLAKDKGVDLSTVKGTGVGGRIRKQDVLAAAKAA 307

Query: 228 PSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAA-----VSKNMIESLSVPT 282
                A  AAPAA   PA  AA A P  P +  +  TT +        +   IESL    
Sbjct: 308 EEARAAA-AAPAAAAAPAAPAAAAKPAEPDTAKLRGTTQKMNRIRQITADKTIESLQTSA 366

Query: 283 -FRVGYPIITDALDALYEKVKP-----KGVTMTAL--LAKAAAMALVQHPVVNAS-CKDG 333
                + +    + AL  + K       GV +T L    +A   AL  HP VNAS   + 
Sbjct: 367 QLTQVHEVDMTRVAALRARAKNDFLEKNGVNLTFLPFFVQAVTEALKAHPNVNASYNAET 426

Query: 334 KSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNS 393
           K  TY+   ++ +AV    GL+ PV+ +A  L L  L++   +L  +AR  +L+P E + 
Sbjct: 427 KEVTYHDVEHVGIAVDTPRGLLVPVIHNAGDLSLPGLAKAINDLAARARDNKLKPDELSG 486

Query: 394 GTFTLSNLGMFGVDRFDAILPPGQGAIMAVGA--SKPTVVADADG 436
           GTFT++N+G  G      IL P Q AI+  GA   +P V+ D DG
Sbjct: 487 GTFTITNIGSGGALFDTPILNPPQAAILGTGAIVKRPRVIKDEDG 531

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score =  138 bits (348), Expect = 1e-35
 Identities = 108/395 (27%), Positives = 176/395 (44%), Gaps = 16/395 (4%)

Query: 56  SKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAI 115
           S ++E+ +P +   + +  ++  +   GD +S  +S++ +ESDKA M+V     G++ ++
Sbjct: 114 SGVQEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSV 172

Query: 116 VVPEGESAPVGAAIGIL-AETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKK 174
            V  G+S P G  I  L              +A   A +PA+        PA +  +   
Sbjct: 173 KVKVGDSVPTGDLILTLSVAGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPA 232

Query: 175 VAESAPSGPRKTV-ATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVA 233
             ++    P K   A P  ++L ++  VD+++V GTG  GRI  EDV++     PS    
Sbjct: 233 PQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKGTGIKGRILREDVQRFVK-EPSVRAQ 291

Query: 234 PSAAPAALPKPAPAAAPAAPLLPGSTV--VPFTTMQAAVSKNMIES-LSVP-TFRVGYPI 289
            +AA AA   P     P         V  V  + ++     N+  +   +P         
Sbjct: 292 AAAASAAGGAPGALPWPNVDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHFDKAD 351

Query: 290 ITD------ALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCK-DGKSFTYNANI 342
           IT+        +A  EK   K +T+  +L KA A AL + P  NAS    G+       +
Sbjct: 352 ITEMEAFRKQQNAAVEKEGVK-LTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYV 410

Query: 343 NIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLG 402
           NI VAV    GL+ PV++D D+  +  L+ +  +L +KAR  +L P E     FT+S+LG
Sbjct: 411 NIGVAVDTPNGLLVPVIKDVDRKGITELALELSDLAKKARDGKLTPDEMQGACFTISSLG 470

Query: 403 MFGVDRFDAILPPGQGAIMAVGASKPTVVADADGF 437
             G   F  I+   + AI+ V  S    V +   F
Sbjct: 471 GIGGTAFTPIVNAPEVAILGVSKSGMEPVWNGKEF 505

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|215289 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component

 Score =  134 bits (338), Expect = 6e-35
 Identities = 104/390 (26%), Positives = 171/390 (43%), Gaps = 32/390 (8%)

Query: 72  EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGI 131
           E +++ W   EGD + + + +  V+SDKA +++ + Y G +A I    G+   VG     
Sbjct: 12  ECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGET--- 68

Query: 132 LAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSG--PRKTVAT 189
           L +   E +Q               H  + + +          +AES   G      ++T
Sbjct: 69  LLKIMVEDSQ---------------HLRSDSLLLPTDSSNIVSLAESDERGSNLSGVLST 113

Query: 190 PYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAA---GIAPSKSVAPSAAPAALPKPAP 246
           P  + L KQ+ +D+N ++GTG  GR+  EDV K A   G+    S A  A  A   + + 
Sbjct: 114 PAVRHLAKQYGIDLNDILGTGKDGRVLKEDVLKYAAQKGVVKDSSSAEEATIAEQEEFST 173

Query: 247 AAAPAAPLLPGSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDAL----DALYEKVK 302
           + +           +P    Q A+ K M  +  VP F     I  DAL     +  E   
Sbjct: 174 SVSTPTEQSYEDKTIPLRGFQRAMVKTMTAAAKVPHFHYVEEINVDALVELKASFQENNT 233

Query: 303 PKGVTMTAL--LAKAAAMALVQHPVVNASCKDGKSF--TYNANINIAVAVAINGGLITPV 358
              V  T L  L K+ +MAL ++P++N SC + ++       + NI VA+A   GL+ P 
Sbjct: 234 DPTVKHTFLPFLIKSLSMALSKYPLLN-SCFNEETSEIRLKGSHNIGVAMATEHGLVVPN 292

Query: 359 LQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQG 418
           +++   L L  ++++   L   A   +L P +   GT TLSN+G  G      +L   + 
Sbjct: 293 IKNVQSLSLLEITKELSRLQHLAAENKLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEV 352

Query: 419 AIMAVGASKPTVVADADGFFGVKSKMLVSL 448
           AI+A+G  +       DG     S M V++
Sbjct: 353 AIIALGRIQKVPRFVDDGNVYPASIMTVTI 382

Length = 416

>gnl|CDD|184847 PRK14843, PRK14843, dihydrolipoamide acetyltransferase; Provisional

 Score =  131 bits (331), Expect = 2e-34
 Identities = 85/255 (33%), Positives = 139/255 (54%), Gaps = 16/255 (6%)

Query: 189 TPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAA 248
           +P AK++  +H +    + GTG  G+I  +DV   A +  +       +PA + K     
Sbjct: 52  SPLAKRIALEHNIAWQEIQGTGHRGKIMKKDV--LALLPENIENDSIKSPAQIEKVEEVP 109

Query: 249 APAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPI-ITDALDALYEKV----- 301
               P       +P T M+  +++ M+ES L+ PTF + Y + +T+ L AL +KV     
Sbjct: 110 DNVTPY-GEIERIPMTPMRKVIAQRMVESYLTAPTFTLNYEVDMTEML-ALRKKVLEPIM 167

Query: 302 --KPKGVTMTALLAKAAAMALVQHPVVNAS-CKDGKSFTYNANINIAVAVAINGGLITPV 358
               K  T+T LL+ A    L++HP +NAS  +DGK+   +  +N+A+AV ++ GL+TPV
Sbjct: 168 EATGKKTTVTDLLSLAVVKTLMKHPYINASLTEDGKTIITHNYVNLAMAVGMDNGLMTPV 227

Query: 359 LQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQG 418
           + +A+K+ L  L   +K+++ +    +L P E  + TFT+SNLGMFGV  F  I+     
Sbjct: 228 VYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGMFGVQSFGPIINQPNS 287

Query: 419 AIMAVGAS--KPTVV 431
           AI+ V ++  KP VV
Sbjct: 288 AILGVSSTIEKPVVV 302

Length = 347

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score =  117 bits (296), Expect = 4e-29
 Identities = 109/421 (25%), Positives = 170/421 (40%), Gaps = 84/421 (19%)

Query: 38  SPSGSSSSRSRR--------RIFIVQSK----IREIFMPALSSTMTEGKIVSWIKSEGDV 85
               S     RR              SK    I+ I +P +  +++EG +V W K  GD 
Sbjct: 12  PLLSSVKGMFRRFSLRKLQPACSAHFSKSYFSIKVIKVPTMGDSISEGTVVEWKKKVGDY 71

Query: 86  LSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAEVAQAKAK 145
           + + E + ++E+DK  +D+     G++  I   EG++  VGA +  +    A      A 
Sbjct: 72  VKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDTGGA----PPAA 127

Query: 146 AASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINS 205
           A +A AAA A       P  A   P P+  A S P                         
Sbjct: 128 APAAAAAAKAEKTTPEKPKAA--APTPEPPAASKP------------------------- 160

Query: 206 VVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTT 265
                                 P  +  P   PA   KP P   P A   P  T VP + 
Sbjct: 161 ---------------------TPPAAAKP-PEPAPAAKPPP--TPVARADPRETRVPMSR 196

Query: 266 MQAAVSKNMIESLS----VPTFRVGYPIITDALDALYEKVKPK-----GVT--MTALLAK 314
           M+  +++ +  S +    + TF         AL  L ++ K       GV     +   K
Sbjct: 197 MRQRIAERLKASQNTCAMLTTFN---ECDMSALMELRKEYKDDFQKKHGVKLGFMSAFVK 253

Query: 315 AAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKW 374
           A+ +AL + P+VNA   DG    Y   ++I+VAVA   GL+ PV+++ +      + ++ 
Sbjct: 254 ASTIALKKMPIVNAYI-DGDEIVYRNYVDISVAVATPTGLVVPVIRNCENKSFAEIEKEL 312

Query: 375 KELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGA--SKPTVVA 432
            +L EKAR+ +L   +   GTFT+SN G+FG      I+ P Q AI+ + A   +P VV 
Sbjct: 313 ADLAEKARNNKLTLEDMTGGTFTISNGGVFGSLMGTPIINPPQSAILGMHAIKKRPVVVG 372

Query: 433 D 433
           +
Sbjct: 373 N 373

Length = 418

>gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

 Score =  101 bits (254), Expect = 2e-26
 Identities = 34/73 (46%), Positives = 49/73 (67%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           EI MP L  +MTEG IV W+  EGD + +G+ +  VE+DKA ++VE    G+LA I+V E
Sbjct: 2   EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEE 61

Query: 120 GESAPVGAAIGIL 132
           G++ PVG  I ++
Sbjct: 62  GDTVPVGQVIAVI 74

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue. Length = 74

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score =  103 bits (260), Expect = 4e-24
 Identities = 52/138 (37%), Positives = 70/138 (50%), Gaps = 4/138 (2%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           EI MPALS TM EG +  W+K EGD +  G+ +  +E+DKA M+VE   +G L  I+VPE
Sbjct: 4   EILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPE 63

Query: 120 G-ESAPVGAAIGILA---ETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKV 175
           G E   V   I +L    E+ ++   A A AA A AAAPA+    +    A +P  P   
Sbjct: 64  GTEGVKVNTPIAVLLEEGESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAP 123

Query: 176 AESAPSGPRKTVATPYAK 193
           A    + P     T    
Sbjct: 124 AAEVAADPDIPAGTEMVT 141

Length = 464

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score =  104 bits (262), Expect = 7e-24
 Identities = 82/312 (26%), Positives = 121/312 (38%), Gaps = 76/312 (24%)

Query: 142 AKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKV 201
           A     S  A   A+    +      + P  K  A  AP+ P                  
Sbjct: 34  ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAP------------- 80

Query: 202 DINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVV 261
                                AA   P+ + A +AAPAA P  A AAAPAA       V 
Sbjct: 81  ---------------------AAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAA-VEDEVT 118

Query: 262 PFTTMQAAVSKNMIESLSVPTF--------------RVGYPIITDALDALYEKVKPKG-- 305
           P     AAV+KNM  SL VPT               R+   +I + L       + +G  
Sbjct: 119 PLRGAAAAVAKNMDASLEVPTATSVRAVPAKLLIDNRI---VINNHL------KRTRGGK 169

Query: 306 VTMTALLAKAAAMALVQHPVVNAS--CKDGK-SFTYNANINIAVAVAING-----GLITP 357
           V+ T L+  A   AL   P +N      DGK +    A++N+ +A+ +        L+ P
Sbjct: 170 VSFTHLIGYALVQALKAFPNMNRHYAEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVP 229

Query: 358 VLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFG----VDRFDAIL 413
            ++ A+ +D       ++++V +AR  +L   ++   T +L+N G  G    V R    L
Sbjct: 230 AIKGAETMDFAQFWAAYEDIVRRARDGKLTADDFQGTTISLTNPGGIGTVHSVPR----L 285

Query: 414 PPGQGAIMAVGA 425
             GQGAI+ VGA
Sbjct: 286 MKGQGAIIGVGA 297

Length = 1228

>gnl|CDD|237002 PRK11857, PRK11857, dihydrolipoamide acetyltransferase; Reviewed

 Score = 98.7 bits (246), Expect = 4e-23
 Identities = 73/237 (30%), Positives = 120/237 (50%), Gaps = 21/237 (8%)

Query: 185 KTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVE---KAAGIAPSKSVAPSAAPAAL 241
           K +ATP A+ L K+  +DI+ + G+G  G+I  EDVE   K+   AP+ + A S + A  
Sbjct: 1   KILATPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSLKSAPTPAEAASVSSAQQ 60

Query: 242 PKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDA----- 296
                A A A P L G        ++ A+++ M  S S     V Y  + + +D      
Sbjct: 61  AAKTAAPAAAPPKLEGK-REKVAPIRKAIARAMTNSWS----NVAYVNLVNEIDMTKLWD 115

Query: 297 LYEKVKPK-----GVTMTAL--LAKAAAMALVQHPVVNASCKDGKS-FTYNANINIAVAV 348
           L + VK       GV +T L  +AKA  +AL + P+  A   +  S   Y   +N+ +AV
Sbjct: 116 LRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEATSELVYPDTLNLGIAV 175

Query: 349 AINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFG 405
               GL+ PV+++A KL +  ++++   L + AR ++++P E   G+FT++N G  G
Sbjct: 176 DTEAGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGSVG 232

Length = 306

>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

 Score = 91.5 bits (228), Expect = 3e-20
 Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 15/130 (11%)

Query: 58  IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVV 117
           I  I MP    +MTEGK+  W+  EGD + KG+ ++ VE+DK   +VE    G L   V 
Sbjct: 2   ITPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVA 61

Query: 118 PEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAE 177
            EGE+ PVGA + ++A  +AEV+ A+  A  A  A                 PE     +
Sbjct: 62  QEGETLPVGALLAVVA--DAEVSDAEIDAFIAPFARRF-------------APEGIDEED 106

Query: 178 SAPSGPRKTV 187
           + P+  +  +
Sbjct: 107 AGPAPRKARI 116

Length = 371

>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component

 Score = 89.8 bits (222), Expect = 2e-19
 Identities = 93/384 (24%), Positives = 158/384 (41%), Gaps = 70/384 (18%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           E  +P +  ++T+G + +++K  G+ +   E++  +E+DK  +D+ +   G++   +V E
Sbjct: 93  EAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKE 152

Query: 120 GESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESA 179
           G++   G  + I++++E   +Q            P S  +  T  P  SPP   K     
Sbjct: 153 GDTVEPGTKVAIISKSEDAASQV----------TP-SQKIPETTDPKPSPPAEDKQKPKV 201

Query: 180 PSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPA 239
            S P                                              K  APS+ P 
Sbjct: 202 ESAP-------------------------------------------VAEKPKAPSSPP- 217

Query: 240 ALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESLSVPTFRVGY---------PII 290
             P    A  P  P       VP T ++  V+  + +S +       +          + 
Sbjct: 218 --PPKQSAKEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLR 275

Query: 291 TDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAI 350
           +   DA YEK   K   M+  + KAA  AL   PVVNA   DG    Y   ++I++AV  
Sbjct: 276 SQYKDAFYEKHGVKLGLMSGFI-KAAVSALQHQPVVNAVI-DGDDIIYRDYVDISIAVGT 333

Query: 351 NGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFD 410
           + GL+ PV++ ADK++   + +    L +KA    +   E   G+FT+SN G++G     
Sbjct: 334 SKGLVVPVIRGADKMNFAEIEKTINGLAKKANEGTISIDEMAGGSFTVSNGGVYGSLIST 393

Query: 411 AILPPGQGAIMAVGA--SKPTVVA 432
            I+ P Q AI+ + +  S+P VV 
Sbjct: 394 PIINPPQSAILGMHSIVSRPMVVG 417

Length = 463

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 82.2 bits (204), Expect = 8e-17
 Identities = 57/241 (23%), Positives = 91/241 (37%), Gaps = 44/241 (18%)

Query: 58  IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVV 117
             E  +P +   + E +++ W+  EGD + + + +V VE+DKA M++ +   G++  I V
Sbjct: 2   AIEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKV 60

Query: 118 PEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEP----- 172
             G++  VG  +  + E     A A A AA+A  AA A+           +         
Sbjct: 61  KVGDTVSVGGLL-AVIEAAGAAAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAAAAGGGV 119

Query: 173 --------------------KKVAES-APSGPRKTVAT---------PYAKKLLKQH-KV 201
                                KV ++        TV T         P A  + +   KV
Sbjct: 120 VEVKVPDIGEITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKV 179

Query: 202 DINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVV 261
                VG+          +E AA    + +   +AAPAA    APA APAA   P +   
Sbjct: 180 GDKVSVGSLLV------VIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAP 233

Query: 262 P 262
            
Sbjct: 234 A 234

Length = 547

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 72.7 bits (179), Expect = 1e-13
 Identities = 63/213 (29%), Positives = 94/213 (44%), Gaps = 34/213 (15%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           EI +P + +   E ++   +   GD +   +S++ VE DKA M+V +   G++  I V  
Sbjct: 4   EIKVPDIGAD--EVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKV 61

Query: 120 GESAPVGAAIGILAET----EAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPK-- 173
           G+    GA I I        +A  AQA+ K  +A AAAPA+       VP +   E +  
Sbjct: 62  GDKVETGALIMIFESADGAADAAPAQAEEKKEAAPAAAPAAAAAKDVHVPDIGSDEVEVT 121

Query: 174 --------KVAESAP----SGPRKT--VATPYAKKLLKQHKVDINSVVGTGPFGRITPED 219
                    V          G + +  V  P+A   +K+ KV++   V TG         
Sbjct: 122 EILVKVGDTVEAEQSLITVEGDKASMEVPAPFAGT-VKEIKVNVGDKVSTG--------S 172

Query: 220 VEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAA 252
           +     +A     AP+AAPAA    APAAAPAA
Sbjct: 173 LIMVFEVAGE---APAAAPAAAEAAAPAAAPAA 202

Length = 633

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 68.1 bits (166), Expect = 3e-12
 Identities = 42/128 (32%), Positives = 60/128 (46%), Gaps = 6/128 (4%)

Query: 63  MPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGES 122
           MPAL  ++TEG + SW+K+ GD +   E ++ V +DK D ++ +   G+L  I  PE ++
Sbjct: 7   MPALGESVTEGTVTSWLKAVGDTVEADEPLLEVSTDKVDTEIPSPAAGVLLEIRAPEDDT 66

Query: 123 APVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSG 182
             VG  + I+ E   E     A AA    AAP        P PA   P     A +AP  
Sbjct: 67  VEVGGVLAIIGE-PGEAGSEPAPAAPEPEAAPEPEAPAPAPTPAAEAP-----APAAPQA 120

Query: 183 PRKTVATP 190
                AT 
Sbjct: 121 GGSGEATE 128

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 67.7 bits (166), Expect = 4e-12
 Identities = 58/220 (26%), Positives = 92/220 (41%), Gaps = 28/220 (12%)

Query: 56  SKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAI 115
           +  +++ +P + S   E ++   +   GD +   +S++ VE DKA M+V   + G +  I
Sbjct: 103 AAAKDVHVPDIGSD--EVEVTEILVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEI 160

Query: 116 VVPEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPE---- 171
            V  G+    G+ I +    E       A  A+A AAAPA+ P  +  V  V+ P+    
Sbjct: 161 KVNVGDKVSTGSLIMVF---EVAGEAPAAAPAAAEAAAPAAAPAAAAGVKDVNVPDIGGD 217

Query: 172 -----------PKKVAESAP----SGPRKT--VATPYAKKLLKQHKVDINSVVGTGPF-G 213
                        KV          G + +  V  P+A   +K+ KV++   V TG    
Sbjct: 218 EVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGT-VKEIKVNVGDKVKTGSLIM 276

Query: 214 RITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAP 253
           R   E    AA  A  ++ AP+ A A    PA A A  A 
Sbjct: 277 RFEVEGAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAE 316

Length = 633

>gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme

 Score = 60.7 bits (148), Expect = 6e-12
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           EI  P +  ++ EG    W+   GD +  G+ +  VE+ K +M++     G++  I+V E
Sbjct: 2   EIKSPMIGESVKEGT-AEWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEILVKE 60

Query: 120 GESAPVGAAIGIL 132
           G++  VG  +  +
Sbjct: 61  GDTVEVGDPLAKI 73

This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins. Length = 73

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score = 65.7 bits (160), Expect = 2e-11
 Identities = 60/244 (24%), Positives = 94/244 (38%), Gaps = 34/244 (13%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           EI +P +     EG+++  +   GD +  G+S++ +ESDKA M+V +   GI+  I V  
Sbjct: 2   EIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKV 60

Query: 120 GESAPVGAAIGILAETEAEVAQAKAKA-----ASAGAAAPASH-PVTSTPVPAVSPPEPK 173
           G++ PVG  I  L       AQA+AK       +AGA APA+          +    E  
Sbjct: 61  GDTLPVGGVIATLEVGAGAQAQAEAKKEAAPAPTAGAPAPAAQAQAAPAAGQSSGVQEVT 120

Query: 174 ---------------------KVAESAP----SGPRKTVATPY-AKKLLKQHKVDINSVV 207
                                 V+           + ++  P  A  ++K  KV +   V
Sbjct: 121 VPDIGDIEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSV 180

Query: 208 GTGPF-GRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTM 266
            TG     ++      A   AP+ +   + +PAA      AA  AA     +     T  
Sbjct: 181 PTGDLILTLSVAGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQN 240

Query: 267 QAAV 270
            A V
Sbjct: 241 PAKV 244

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 21/73 (28%), Positives = 37/73 (50%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
            I +P L+  + +G +V W+K  GD + KG+ +  +E+ KA  DVE    G +  ++V E
Sbjct: 1   TILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKE 60

Query: 120 GESAPVGAAIGIL 132
           G        +  +
Sbjct: 61  GTKVEGDTPLVKI 73

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue. Length = 73

>gnl|CDD|202412 pfam02817, E3_binding, e3 binding domain

 Score = 55.1 bits (134), Expect = 2e-10
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 184 RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEK 222
            +  A+P A+KL  +  +D++ V GTGP GRIT EDV  
Sbjct: 1   GRVFASPAARKLAAEKGIDLSQVKGTGPGGRITKEDVLA 39

This family represents a small domain of the E2 subunit of 2-oxo-acid dehydrogenases responsible for the binding of the E3 subunit. Length = 39

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 51.1 bits (122), Expect = 1e-06
 Identities = 37/154 (24%), Positives = 56/154 (36%), Gaps = 2/154 (1%)

Query: 118  PEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAE 177
            P  E AP               A+  + A  A  A PA     +TP     P  P   A 
Sbjct: 2706 PTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAG 2765

Query: 178  SAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAA 237
                 P    A    ++L +     ++    + P     P D   AA +AP+ ++ P+A+
Sbjct: 2766 PPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPW-DPADP-PAAVLAPAAALPPAAS 2823

Query: 238  PAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVS 271
            PA    P  +A P AP  P     P   +  +V+
Sbjct: 2824 PAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVA 2857

Length = 3151

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 36/139 (25%), Positives = 42/139 (30%), Gaps = 15/139 (10%)

Query: 120 GESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESA 179
              A   A     A  EA    A   A +A A APA+ P  +   PA  P      A  A
Sbjct: 369 AAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPA----AAPPA 424

Query: 180 PSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPA 239
           P       A P A        V +             P        +A    VAP  A A
Sbjct: 425 PVAAPAAAA-PAAAPAAAPAAVALAPA----------PPAQAAPETVAIPVRVAPEPAVA 473

Query: 240 ALPKPAPAAAPAAPLLPGS 258
           +      AA  AA L P  
Sbjct: 474 SAAPAPAAAPAAARLTPTE 492

Length = 618

>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

 Score = 42.4 bits (101), Expect = 1e-05
 Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 65  ALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAP 124
            +++ M  G +V  +  EGD +  G+ + V+E+ K + +V     G++  I+V EG+   
Sbjct: 1   EVTAPMP-GTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVE 59

Query: 125 VGAAIGIL 132
            G  + ++
Sbjct: 60  AGQLLVVI 67

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. Length = 67

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 37/186 (19%), Positives = 52/186 (27%), Gaps = 9/186 (4%)

Query: 113 AAIVVPEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTS---TPVPAVSP 169
           A    P   +A    A      + A  A A A+ ASA     A  P  +    P  A  P
Sbjct: 405 APAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARP 464

Query: 170 ----PEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRI--TPEDVEKA 223
               P P   A +A        A P           ++     +    +    P      
Sbjct: 465 AAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAE 524

Query: 224 AGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESLSVPTF 283
           +   P+ +    A     P PA A AP A       V P     +A     +     P  
Sbjct: 525 SIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPAL 584

Query: 284 RVGYPI 289
               P+
Sbjct: 585 AARLPV 590

Length = 700

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 33/147 (22%), Positives = 46/147 (31%), Gaps = 2/147 (1%)

Query: 126 GAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRK 185
           GA  G +    A    A    A+A   A A   VT+    A +   PK  A +A +    
Sbjct: 366 GAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEA 425

Query: 186 TVA--TPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPK 243
             A   P A         D ++ V      R + +         P      ++APA+   
Sbjct: 426 PPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAP 485

Query: 244 PAPAAAPAAPLLPGSTVVPFTTMQAAV 270
           P  A  PA      S   P     A  
Sbjct: 486 PDAAFEPAPRAAAPSAATPAAVPDARA 512

Length = 830

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.2 bits (107), Expect = 5e-05
 Identities = 29/154 (18%), Positives = 43/154 (27%), Gaps = 6/154 (3%)

Query: 120 GESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESA 179
             +   GA     A   A V  +   A +A   A  +         A +       A  A
Sbjct: 372 VPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPA 431

Query: 180 PSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPA 239
           P                   K +  +   +         D +  A    + + A  A P 
Sbjct: 432 PPATADRGDDAADGDAPVPAKANARASADSRC----DERDAQPPADSGSASAPASDAPPD 487

Query: 240 ALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKN 273
           A  +PAP AA  +        VP     AA S+ 
Sbjct: 488 AAFEPAPRAAAPSA--ATPAAVPDARAPAAASRE 519

Length = 830

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 39/156 (25%), Positives = 47/156 (30%), Gaps = 21/156 (13%)

Query: 100 ADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPV 159
           A  D      G+LA +   E      G A    A   +  A A A A +  AAAPA+   
Sbjct: 367 ASDDER----GLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAA 422

Query: 160 TSTPV--PAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITP 217
            +          P P     S         A                      P  +  P
Sbjct: 423 PAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPP--------------AAAPSAQPAP 468

Query: 218 EDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAP 253
                    A   + AP AAPA    PA  AAPAAP
Sbjct: 469 APAAAPEPTAAP-APAPPAAPAPAAAPAAPAAPAAP 503

Length = 824

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 28/139 (20%), Positives = 35/139 (25%), Gaps = 9/139 (6%)

Query: 113 AAIVVPEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEP 172
           AA        AP  A          + A        A A A AS         A  P + 
Sbjct: 415 AAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADS 474

Query: 173 KKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSV 232
              +  A   P      P A           ++           P    +    A +   
Sbjct: 475 GSASAPASDAP------PDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPP 528

Query: 233 APSAAPAALPKPAPAAAPA 251
           AP A P     PA AA  A
Sbjct: 529 APEARPPT---PAAAAPAA 544

Length = 830

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 33/139 (23%), Positives = 43/139 (30%), Gaps = 23/139 (16%)

Query: 126 GAAIGILAETEAEV--AQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGP 183
               G+LA  E           A +  AAAP++        PA +   P   A  AP+  
Sbjct: 369 DDERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAA 428

Query: 184 RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPK 243
            +    P                          P      A    + S  P+AAP+A P 
Sbjct: 429 PQPAPAPAPAP---------------------APPSPAGNAPAGGAPSPPPAAAPSAQPA 467

Query: 244 PAPAAAPAAPLLPGSTVVP 262
           PAPAAAP     P      
Sbjct: 468 PAPAAAPEPTAAPAPAPPA 486

Length = 824

>gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism]

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 65  ALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAP 124
            ++S M  G +       GD +  G+++ ++E+ K + ++E   DG++  I+V  G+   
Sbjct: 72  QVTSPMV-GTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVE 130

Query: 125 VGAAIGILA 133
            G  + ++ 
Sbjct: 131 YGDPLAVIE 139

Length = 140

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 37/151 (24%), Positives = 48/151 (31%), Gaps = 19/151 (12%)

Query: 120 GESAPVGAAIGILAET------EAEVAQAKAKAASAGAAAPASHPVTSTP--VPAVSPPE 171
           G + P  AA   +A+        A  A A A   +A AAAPA+          PA   P 
Sbjct: 370 GGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPA 429

Query: 172 PKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKS 231
           P+ +A +  +  R     P                    P     P         A + +
Sbjct: 430 PEALAAARQASARGPGGAPAPA-----------PAPAAAPAAAARPAAAGPRPVAAAAAA 478

Query: 232 VAPSAAPAALPKPAPAAAPAAPLLPGSTVVP 262
               AAPAA P PA    P    LP     P
Sbjct: 479 APARAAPAAAPAPADDDPPPWEELPPEFASP 509

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 33/158 (20%), Positives = 40/158 (25%), Gaps = 1/158 (0%)

Query: 112 LAAIVVPEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPE 171
                V        G        +     +A   AA A  AAPA+               
Sbjct: 582 WQVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASA 641

Query: 172 PKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKS 231
                 +AP    K VA P A                  P     P      AG AP++ 
Sbjct: 642 APAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQP 701

Query: 232 VA-PSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQA 268
              P+A P A     PAA P       S   P      
Sbjct: 702 APAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPV 739

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 35/151 (23%), Positives = 43/151 (28%), Gaps = 6/151 (3%)

Query: 125 VGAAIGILAETEAEVAQAKAKAASAGAAAPAS------HPVTSTPVPAVSPPEPKKVAES 178
           +   +G   + EA V  A   A   G  APAS          + P    +P  P     +
Sbjct: 574 LAEELGGDWQVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAA 633

Query: 179 APSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAP 238
           A          P         K         G  G          A   P+ + A  AAP
Sbjct: 634 AAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAP 693

Query: 239 AALPKPAPAAAPAAPLLPGSTVVPFTTMQAA 269
           A      PA APAA    G    P      A
Sbjct: 694 AGAAPAQPAPAPAATPPAGQADDPAAQPPQA 724

Length = 824

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 28/160 (17%), Positives = 37/160 (23%), Gaps = 7/160 (4%)

Query: 110  GILAAIVVPEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSP 169
                          P    +            A+A +        A+ P   +      P
Sbjct: 2642 PPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADP 2701

Query: 170  PEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPS 229
            P P    E AP         P      +Q            P     P      A     
Sbjct: 2702 PPPPPTPEPAPHALVSATPLPPGPAAARQ-------ASPALPAAPAPPAVPAGPATPGGP 2754

Query: 230  KSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAA 269
               A     A  P PAP AAPAA      T     ++  +
Sbjct: 2755 ARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSES 2794

Length = 3151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	452
PRK05704	407	dihydrolipoamide succinyltransferase; Validated	100.0
TIGR01347	403	sucB 2-oxoglutarate dehydrogenase complex dihydrol	100.0
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	100.0
PLN02744	539	dihydrolipoyllysine-residue acetyltransferase comp	100.0
KOG0557	470	consensus Dihydrolipoamide acetyltransferase [Ener	100.0
TIGR01349	435	PDHac_trf_mito pyruvate dehydrogenase complex dihy	100.0
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	100.0
PLN02528	416	2-oxoisovalerate dehydrogenase E2 component	100.0
COG0508	404	AceF Pyruvate/2-oxoglutarate dehydrogenase complex	100.0
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	100.0
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	100.0
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	100.0
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	100.0
PRK11856	411	branched-chain alpha-keto acid dehydrogenase subun	100.0
KOG0558	474	consensus Dihydrolipoamide transacylase (alpha-ket	100.0
PRK11857	306	dihydrolipoamide acetyltransferase; Reviewed	100.0
PRK14843	347	dihydrolipoamide acetyltransferase; Provisional	100.0
KOG0559	457	consensus Dihydrolipoamide succinyltransferase (2-	100.0
PF00198	231	2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransfe	100.0
PRK12270	1228	kgd alpha-ketoglutarate decarboxylase; Reviewed	100.0
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	99.76
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	99.76
PRK06748	83	hypothetical protein; Validated	99.65
PRK11892	464	pyruvate dehydrogenase subunit beta; Provisional	99.61
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	99.57
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	99.52
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	99.49
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	99.47
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.46
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	99.43
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.37
PF02817	39	E3_binding: e3 binding domain; InterPro: IPR004167	99.36
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	99.35
PRK07051	80	hypothetical protein; Validated	99.32
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	99.32
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	99.31
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	99.29
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	99.28
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	99.24
PRK14042	596	pyruvate carboxylase subunit B; Provisional	99.22
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.19
cd06849	74	lipoyl_domain Lipoyl domain of the dihydrolipoyl a	99.18
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	99.03
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	99.02
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	98.99
PRK14040	593	oxaloacetate decarboxylase; Provisional	98.98
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	98.88
PRK09282	592	pyruvate carboxylase subunit B; Validated	98.86
PRK12999	1146	pyruvate carboxylase; Reviewed	98.81
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	98.78
KOG0369	1176	consensus Pyruvate carboxylase [Energy production	98.6
PF00302	206	CAT: Chloramphenicol acetyltransferase; InterPro:	98.49
cd06848	96	GCS_H Glycine cleavage H-protein. Glycine cleavage	98.24
KOG0238	670	consensus 3-Methylcrotonyl-CoA carboxylase, biotin	98.18
PRK13757	219	chloramphenicol acetyltransferase; Provisional	98.11
TIGR03077	110	not_gcvH glycine cleavage protein H-like protein,	97.93
KOG0368	2196	consensus Acetyl-CoA carboxylase [Lipid transport	97.93
PRK09783	409	copper/silver efflux system membrane fusion protei	97.86
PRK00624	114	glycine cleavage system protein H; Provisional	97.81
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	97.8
PRK13380	144	glycine cleavage system protein H; Provisional	97.76
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	97.75
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	97.75
PRK10476	346	multidrug resistance protein MdtN; Provisional	97.69
PRK01202	127	glycine cleavage system protein H; Provisional	97.65
PRK15136	390	multidrug efflux system protein EmrA; Provisional	97.52
PRK14843	347	dihydrolipoamide acetyltransferase; Provisional	97.48
PRK03598	331	putative efflux pump membrane fusion protein; Prov	97.47
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	97.47
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	97.46
PRK09859	385	multidrug efflux system protein MdtE; Provisional	97.37
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	97.3
TIGR00527	127	gcvH glycine cleavage system H protein. The genome	97.28
PRK12784	84	hypothetical protein; Provisional	97.21
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	97.2
PRK11578	370	macrolide transporter subunit MacA; Provisional	97.15
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	97.15
PF12700	328	HlyD_2: HlyD family secretion protein; PDB: 3LNN_B	96.98
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	96.91
PF01597	122	GCV_H: Glycine cleavage H-protein; InterPro: IPR00	96.88
COG4845	219	Chloramphenicol O-acetyltransferase [Defense mecha	96.84
TIGR03309	256	matur_yqeB selenium-dependent molybdenum hydroxyla	96.74
COG0509	131	GcvH Glycine cleavage system H protein (lipoate-bi	96.32
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	96.22
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	96.19
TIGR00999	265	8a0102 Membrane Fusion Protein cluster 2 (function	96.13
COG1566	352	EmrA Multidrug resistance efflux pump [Defense mec	96.11
PF13375	101	RnfC_N: RnfC Barrel sandwich hybrid domain	96.04
cd06253	298	M14_ASTE_ASPA_like_3 A functionally uncharacterize	95.85
PRK06748	83	hypothetical protein; Validated	95.69
cd06251	287	M14_ASTE_ASPA_like_1 A functionally uncharacterize	95.55
cd06250	359	M14_PaAOTO_like An uncharacterized subgroup of the	95.53
cd06252	316	M14_ASTE_ASPA_like_2 A functionally uncharacterize	95.52
TIGR02994	325	ectoine_eutE ectoine utilization protein EutE. Mem	95.31
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	95.1
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	94.89
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	94.88
cd06254	288	M14_ASTE_ASPA_like_4 A functionally uncharacterize	94.46
PF13437	105	HlyD_3: HlyD family secretion protein	94.37
COG3608	331	Predicted deacylase [General function prediction o	94.25
PF09891	150	DUF2118: Uncharacterized protein conserved in arch	94.03
PF07247	480	AATase: Alcohol acetyltransferase; InterPro: IPR01	93.97
PRK07051	80	hypothetical protein; Validated	93.91
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	93.66
PF05896	257	NQRA: Na(+)-translocating NADH-quinone reductase s	93.61
PF00529	305	HlyD: HlyD family secretion protein the correspond	93.44
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	93.19
PRK10476	346	multidrug resistance protein MdtN; Provisional	93.05
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	93.02
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	92.45
PF00529	305	HlyD: HlyD family secretion protein the correspond	92.45
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	92.43
PRK09859	385	multidrug efflux system protein MdtE; Provisional	92.28
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	92.05
TIGR01936	447	nqrA NADH:ubiquinone oxidoreductase, Na(+)-translo	91.81
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	91.4
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	91.17
PRK05035	695	electron transport complex protein RnfC; Provision	91.16
PRK11578	370	macrolide transporter subunit MacA; Provisional	91.09
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	90.98
PF12700	328	HlyD_2: HlyD family secretion protein; PDB: 3LNN_B	90.81
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	90.76
PRK15136	390	multidrug efflux system protein EmrA; Provisional	90.72
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	90.39
PRK05352	448	Na(+)-translocating NADH-quinone reductase subunit	89.96
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	89.7
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	89.65
PRK03598	331	putative efflux pump membrane fusion protein; Prov	89.55
PF07831	75	PYNP_C: Pyrimidine nucleoside phosphorylase C-term	89.52
cd06255	293	M14_ASTE_ASPA_like_5 A functionally uncharacterize	89.44
TIGR01945	435	rnfC electron transport complex, RnfABCDGE type, C	88.67
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	88.58
COG1726	447	NqrA Na+-transporting NADH:ubiquinone oxidoreducta	88.42
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	87.99
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	87.56
PF04952	292	AstE_AspA: Succinylglutamate desuccinylase / Aspar	87.4
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	86.89
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	86.3
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	86.25
PRK09783	409	copper/silver efflux system membrane fusion protei	86.09
COG4072	161	Uncharacterized protein conserved in archaea [Func	85.41
PF02749	88	QRPTase_N: Quinolinate phosphoribosyl transferase,	85.18
PRK09439	169	PTS system glucose-specific transporter subunit; P	84.16
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	84.06
COG4656	529	RnfC Predicted NADH:ubiquinone oxidoreductase, sub	83.97
PRK14042	596	pyruvate carboxylase subunit B; Provisional	83.95
KOG3373	172	consensus Glycine cleavage system H protein (lipoa	83.68
cd00210	124	PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose s	83.68
COG0845	372	AcrA Membrane-fusion protein [Cell envelope biogen	83.4
PF13437	105	HlyD_3: HlyD family secretion protein	83.09
PF00358	132	PTS_EIIA_1: phosphoenolpyruvate-dependent sugar ph	82.86
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	82.68
TIGR00830	121	PTBA PTS system, glucose subfamily, IIA component.	82.17
PRK14040	593	oxaloacetate decarboxylase; Provisional	81.23
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	81.14
TIGR00164	189	PS_decarb_rel phosphatidylserine decarboxylase pre	81.07
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	80.85

>PRK05704 dihydrolipoamide succinyltransferase; Validated

Probab=100.00  E-value=3e-84  Score=670.57  Aligned_cols=367  Identities=31%  Similarity=0.446  Sum_probs=304.5

Q ss_pred             eEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchh
Q 012955           58 IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA  137 (452)
Q Consensus        58 ~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~  137 (452)
                      .++|+||+||++|+||+|++|+|++||.|++||+||+||+||++++|+||++|+|.++++++|+.|++|++|++|++.++
T Consensus         2 ~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~   81 (407)
T PRK05704          2 MVEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGAA   81 (407)
T ss_pred             CeeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCc
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999976543


Q ss_pred             hHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCcccch
Q 012955          138 EVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITP  217 (452)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aRklA~e~gIdL~~V~gtG~~GrI~~  217 (452)
                      +...    ...     +...++ +. + .+.+...   .+. . ....+++||+||+||+||||||++|.|||++|||++
T Consensus        82 ~~~~----~~~-----~~~~~~-~~-~-~~~~~~~---~~~-~-~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~  144 (407)
T PRK05704         82 AGAA----AAA-----AAAAAA-AA-A-APAQAQA---AAA-A-EQSNDALSPAARKLAAENGLDASAVKGTGKGGRVTK  144 (407)
T ss_pred             cccc----CCC-----CCCCCC-CC-C-CCCCCCC---Ccc-C-CCccccCCchhhhHHhhcCCChhhCCCCCCCCcccH
Confidence            2110    000     000000 00 0 0000000   000 0 112467999999999999999999999999999999


Q ss_pred             hhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhc-CCccEEEEEEEEechHHHH
Q 012955          218 EDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDA  296 (452)
Q Consensus       218 ~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l~~  296 (452)
                      +||++|+.......    . +.+.+....  .+........+.+||+++||+|+++|++| +++||||++.+||+++|++
T Consensus       145 ~DV~~~~~~~~~~~----~-~~~~~~~~~--~~~~~~~~~~~~vpls~~rk~ia~~m~~S~~~iPh~~~~~evd~~~l~~  217 (407)
T PRK05704        145 EDVLAALAAAAAAP----A-APAAAAPAA--APAPLGARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMD  217 (407)
T ss_pred             HHHHHHhhcccccC----C-CCCCCCCcC--CCccccCCcceEeeChHHHHHHHHHHHHHhhcCCeEEEEEEEeHHHHHH
Confidence            99999975321110    0 000000000  00000011134689999999999999999 8999999999999999999


Q ss_pred             HHHHhCC-------CCCCHHHHHHHHHHHHHhhCCcCcceeeCCCeEEEcCCccEEEEEecCCCeEeeeecCCCCCCHHH
Q 012955          297 LYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYL  369 (452)
Q Consensus       297 lr~~~~~-------~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~e  369 (452)
                      +|+++++       -++|+++||+||++.||++||.||++|+ ++++++++++||||||++++||++|||||+|+|||.|
T Consensus       218 ~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~-~~~i~~~~~~nIgiAv~~~~GLivPVI~~a~~~sl~e  296 (407)
T PRK05704        218 LRKQYKDAFEKKHGVKLGFMSFFVKAVVEALKRYPEVNASID-GDDIVYHNYYDIGIAVGTPRGLVVPVLRDADQLSFAE  296 (407)
T ss_pred             HHHHHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhhcEEc-CCeEEEcCCCCeEEEEECCCceEeCcCCCcccCCHHH
Confidence            9999974       1699999999999999999999999996 4579999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCCCceEEEEecCceeEEEEcCCCcEEEEeEEEEEEE
Q 012955          370 LSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLI  449 (452)
Q Consensus       370 ia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt  449 (452)
                      |++++++|++|+|+|+|+++||+||||||||+||||+.+|+|||||||+||||+|+++++||++ ||++++|++|+||||
T Consensus       297 Ia~~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~tpiIn~pq~aILgvG~i~~~pv~~-~g~i~~r~~~~lsls  375 (407)
T PRK05704        297 IEKKIAELAKKARDGKLSIEELTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHKIKERPVAV-NGQIVIRPMMYLALS  375 (407)
T ss_pred             HHHHHHHHHHHHHcCCCChHHcCCceEEEecCCcccccceeccccCCcEEEEEcccceEEeEEE-CCEEEEEEEEEEEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999996 799999999999999


Q ss_pred             e
Q 012955          450 S  450 (452)
Q Consensus       450 ~  450 (452)
                      |
T Consensus       376 ~  376 (407)
T PRK05704        376 Y  376 (407)
T ss_pred             e
Confidence            8

>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

Probab=100.00  E-value=2.2e-83  Score=662.86  Aligned_cols=364  Identities=29%  Similarity=0.454  Sum_probs=303.5

Q ss_pred             EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchhh
Q 012955           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAE  138 (452)
Q Consensus        59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~~  138 (452)
                      ++|+||+||++|++|+|++|+|++||.|++||+||+||+||+.+||+||++|+|.++++++|+.|++|++|++|++.++.
T Consensus         1 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~~~~   80 (403)
T TIGR01347         1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEGNDA   80 (403)
T ss_pred             CeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCCC
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999754321


Q ss_pred             HHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCcccchh
Q 012955          139 VAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPE  218 (452)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aRklA~e~gIdL~~V~gtG~~GrI~~~  218 (452)
                       ..  .  .  .  ++. .++.....+.+  . .+  .+  ...++++.+||+||+||+||||||+.|.|||++|||+++
T Consensus        81 -~~--~--~--~--~~~-~~~~~~~~~~~--~-~~--~~--~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~  143 (403)
T TIGR01347        81 -TA--A--P--P--AKS-GEEKEETPAAS--A-AA--AP--TAAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGRVTKE  143 (403)
T ss_pred             -cc--c--c--c--ccc-cCCCCCCCCCC--C-CC--CC--cCccccccCCchhhhHHHHcCCChhhCCCCCCCCcccHH
Confidence             00  0  0  0  000 00000000000  0 00  00  011246689999999999999999999999999999999


Q ss_pred             hHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhc-CCccEEEEEEEEechHHHHH
Q 012955          219 DVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDAL  297 (452)
Q Consensus       219 DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l~~l  297 (452)
                      ||++|++.....   + . +.+  ....+. +.. .....+.+||+++||+|+++|++| +++||||++.++|+++|+++
T Consensus       144 DV~~~~~~~~~~---~-~-~~~--~~~~~~-~~~-~~~~~~~~pls~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~  214 (403)
T TIGR01347       144 DIIKKTEAPASA---Q-A-PAP--AAAAKA-PAN-FTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMEL  214 (403)
T ss_pred             HHHHhhhccccc---C-C-CCC--CcccCC-ccc-cCCCceEeeCcHHHHHHHHHHHHHhccCCEEEEEEEEEHHHHHHH
Confidence            999997531110   0 0 000  000000 000 011235689999999999999999 79999999999999999999


Q ss_pred             HHHhCCC-------CCCHHHHHHHHHHHHHhhCCcCcceeeCCCeEEEcCCccEEEEEecCCCeEeeeecCCCCCCHHHH
Q 012955          298 YEKVKPK-------GVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLL  370 (452)
Q Consensus       298 r~~~~~~-------~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~ei  370 (452)
                      |+++++.       ++|+++||+||++.||++||.||++|+ +++|++++++||||||++++||++|||||+|+|||.||
T Consensus       215 r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~-~~~i~~~~~vnIgvAv~~~~GL~vPVIr~ad~~sl~eI  293 (403)
T TIGR01347       215 RKRYKEEFEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEID-GDDIVYKDYYDISVAVSTDRGLVVPVVRNADRMSFADI  293 (403)
T ss_pred             HHHHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhheEEc-CCEEEEcCCCCeEEEEECCCCeEECcCCCcccCCHHHH
Confidence            9998741       699999999999999999999999996 46899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCCCceEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955          371 SQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLIS  450 (452)
Q Consensus       371 a~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~  450 (452)
                      ++++++|++|+|+|+|+++||+||||||||+||||+.+|+|||||||+||||+|+++++|++. ||++++|++|+|||||
T Consensus       294 a~~~~~l~~~ar~gkL~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aILgvG~i~~~pv~~-~g~i~~r~~m~lsLt~  372 (403)
T TIGR01347       294 EKEIADLGKKARDGKLTLEDMTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHGIKERPVAV-NGQIEIRPMMYLALSY  372 (403)
T ss_pred             HHHHHHHHHHHHcCCCChhhcCCceEEEecCCcCcccceeccccCCceEEEecccceEEEEEE-CCeEEEEEEEEEEEEe
Confidence            999999999999999999999999999999999999999999999999999999999999996 7999999999999998

dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=100.00  E-value=2.9e-83  Score=690.82  Aligned_cols=394  Identities=30%  Similarity=0.421  Sum_probs=306.7

Q ss_pred             eeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955           57 KIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus        57 ~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      +..+|.||+||++|++|+|++|+|++||.|++||.||+|||||+.++|+||++|+|.+|++++|+.|++|++|++|++.+
T Consensus       134 ~~~~~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~  213 (590)
T TIGR02927       134 AATDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIGDAG  213 (590)
T ss_pred             CceEEEcCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEecCC
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999997544


Q ss_pred             hhHHHHHhhhhccCCC--CCCCCCCCCCC----CCCC-CCC----CCC--CCCCC-CCCCCCccccChhHHHHHhhcCCC
Q 012955          137 AEVAQAKAKAASAGAA--APASHPVTSTP----VPAV-SPP----EPK--KVAES-APSGPRKTVATPYAKKLLKQHKVD  202 (452)
Q Consensus       137 ~~~~~~~~~~~~~~~~--~~~~~~p~~~~----~~~~-~~~----~~~--~~~~~-~~~~~~~~~asP~aRklA~e~gId  202 (452)
                      ++..............  .+....+....    ...+ .+.    ...  ...+. ....+.++++||+|||||+|||||
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvd  293 (590)
T TIGR02927       214 AAAAEDAKAEEEAEAKAEAKPEEKPDPKKDEAAEPEPDEPEAEKAEKKEEKAAAAPAANSDGSPYVTPLVRKLAAEHGID  293 (590)
T ss_pred             CccccccccccccccccccccCCCCccccccccccccccccccccccccccccccccccccCcccCCchhHHHHHHcCCC
Confidence            3321100000000000  00000000000    0000 000    000  00000 011234678999999999999999


Q ss_pred             ccccccCCCCcccchhhHHHhhccCCCCCCCCCCC-CCCCCCCC-CCCCCCCCC--CCCCceeccchhhHHHHHHhhhc-
Q 012955          203 INSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAA-PAALPKPA-PAAAPAAPL--LPGSTVVPFTTMQAAVSKNMIES-  277 (452)
Q Consensus       203 L~~V~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~--~~~~~~~p~s~~rk~ia~~m~~S-  277 (452)
                      |+.|.|||++|||+++||++|+.........+... ....+... .......+.  ...++.+||++|||.|+++|++| 
T Consensus       294 l~~v~GtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~rk~ia~~m~~S~  373 (590)
T TIGR02927       294 LNSVKGTGIGGRIRKQDVLAAAEGAKAAAEAPAAEAAAAAPAAAAAASASPAPAKAHLRGTTQKANRIREITAKKTREAL  373 (590)
T ss_pred             HHHCCCCCCCCeEeHHHHHHHHhccccccccccccccccCccccccccCCCccccccccCceeeccHHHHHHHHHHHHHh
Confidence            99999999999999999999985321100000000 00000000 000000000  00245689999999999999999 


Q ss_pred             CCccEEEEEEEEechHHHHHHHHhCCC-------CCCHHHHHHHHHHHHHhhCCcCcceeeC-CCeEEEcCCccEEEEEe
Q 012955          278 LSVPTFRVGYPIITDALDALYEKVKPK-------GVTMTALLAKAAAMALVQHPVVNASCKD-GKSFTYNANINIAVAVA  349 (452)
Q Consensus       278 ~~iP~~~~~~eid~~~l~~lr~~~~~~-------~vs~t~~l~kA~a~AL~~~P~~Ns~~~~-~~~i~~~~~vnIgvAV~  349 (452)
                      +++||||++.+||+++|+++|+++++.       ++|+++||+||++.||++||.||++|++ ++.|++|+++||||||+
T Consensus       374 ~~iPh~~~~~evdvt~l~~~R~~l~~~~~~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~  453 (590)
T TIGR02927       374 QASAQLTQLHEVDMTKIAALRARAKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVNASYNADTKEITYHAAEHLGFAVD  453 (590)
T ss_pred             ccCCeEEEEeEEEcHHHHHHHHHHHhhhHHhcCCcccHHHHHHHHHHHHHHhCCHhheEEecCCCEEEEeCCccEEEEEE
Confidence            789999999999999999999999741       6999999999999999999999999974 45899999999999999


Q ss_pred             cCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCCCceEEEEecCceeE
Q 012955          350 INGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPT  429 (452)
Q Consensus       350 ~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~ppq~aiL~vG~i~~~  429 (452)
                      +++||++|||||+|+|||.+|++++++|.+|+|+|+|+++||+|||||||||||||+++|+|||||||+||||||+++++
T Consensus       454 t~~GL~vPvIk~a~~~sl~~ia~~i~~l~~kAr~gkL~p~e~~GgTfTISNlG~~G~~~~tpIIn~PqvaILgvG~i~~~  533 (590)
T TIGR02927       454 TDAGLLSPVIHNAGDLSLGEIAKAIADIAARARNGKLKPDDLAGGTFTITNIGSEGALFDTPILIPPQAAILGTGAIVKR  533 (590)
T ss_pred             CCCCcEecccCCcccCCHHHHHHHHHHHHHHHHcCCCChHHhCCCeEEEECCCCCCccceeceecCCCeEEEEcccceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEc--CCC--cEEEEeEEEEEEEe
Q 012955          430 VVAD--ADG--FFGVKSKMLVSLIS  450 (452)
Q Consensus       430 ~v~~--~dg--~i~~~~~m~ltlt~  450 (452)
                      ||++  +||  .|++|++|+|||||
T Consensus       534 pv~~~~~~g~~~~~~~~~m~lsls~  558 (590)
T TIGR02927       534 PRVITDEDGIDSIAIRQMCHLPLTY  558 (590)
T ss_pred             EEEeccCCCcccEEEEeeEEEeeec
Confidence            9985  245  49999999999998

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

Probab=100.00  E-value=6.7e-83  Score=674.22  Aligned_cols=382  Identities=34%  Similarity=0.510  Sum_probs=306.9

Q ss_pred             ceeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCC-ccCCCCeEEEEec
Q 012955           56 SKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGE-SAPVGAAIGILAE  134 (452)
Q Consensus        56 ~~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~-~v~~G~~l~~i~~  134 (452)
                      ..+.+|+||+||++|+||+|++|+|++||.|++||+||+|||||+.+||+++++|+|.+|++++|+ .|++|++|+++.+
T Consensus       110 ~~~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i~~  189 (539)
T PLN02744        110 PPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAITVE  189 (539)
T ss_pred             CCCceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcccCCCCEEEEEcc
Confidence            446999999999999999999999999999999999999999999999999999999999999996 7999999999865


Q ss_pred             chhhHHHHHhhhhcc--CCCCCCC-CCCC-CCCC--CCCCCCCCC-CCCC-CCCCCCCccccChhHHHHHhhcCCCcccc
Q 012955          135 TEAEVAQAKAKAASA--GAAAPAS-HPVT-STPV--PAVSPPEPK-KVAE-SAPSGPRKTVATPYAKKLLKQHKVDINSV  206 (452)
Q Consensus       135 ~~~~~~~~~~~~~~~--~~~~~~~-~~p~-~~~~--~~~~~~~~~-~~~~-~~~~~~~~~~asP~aRklA~e~gIdL~~V  206 (452)
                      ++++.+......+..  ..+.+.. ..++ +...  ..+.+.+.+ ...+ .....+.++++||+|||||+||||||+.|
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ASP~aRrLAre~GVDLs~V  269 (539)
T PLN02744        190 EEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIFASPLARKLAEDNNVPLSSI  269 (539)
T ss_pred             CccccccccccccccccccccccccCCCCCcccccccCCCCCcccccccccccccccccccCCchhHHHHHHcCCCHHHC
Confidence            443321111000000  0000000 0000 0000  000000000 0000 00112246789999999999999999999


Q ss_pred             ccCCCCcccchhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhc-CCccEEEE
Q 012955          207 VGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRV  285 (452)
Q Consensus       207 ~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~rk~ia~~m~~S-~~iP~~~~  285 (452)
                      +|||++|||+++||++|+.......      +.+.  ..+  .  ..+....+.+|+++|||.|+++|.+| +++||||+
T Consensus       270 ~GTGp~GRI~k~DV~a~~~~~~~~~------~~~~--~~~--~--~~~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~  337 (539)
T PLN02744        270 KGTGPDGRIVKADIEDYLASGGKGA------TAPP--STD--S--KAPALDYTDIPNTQIRKVTASRLLQSKQTIPHYYL  337 (539)
T ss_pred             CCCCCCCcccHHHHHHHhhcccccc------CCCC--Ccc--c--CCCCCccccccchhHHHHHHHHHHHHHhhCCeEEE
Confidence            9999999999999999975311100      0010  000  0  00011235689999999999999999 89999999


Q ss_pred             EEEEechHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHhhCCcCcceeeCCCeEEEcCCccEEEEEecCCCeEeee
Q 012955          286 GYPIITDALDALYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPV  358 (452)
Q Consensus       286 ~~eid~~~l~~lr~~~~~-------~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~~i~~~~~vnIgvAV~~~~GL~vPV  358 (452)
                      +.++|+++|+++|+++++       .++|+++||+||++.||++||.||++|+ ++.|+++++|||||||++++||++||
T Consensus       338 ~~evdvt~L~~lR~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~~-~~~i~~~~~vnIgvAV~t~~GL~vPV  416 (539)
T PLN02744        338 TVDTRVDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWT-DDYIRQYHNVNINVAVQTENGLYVPV  416 (539)
T ss_pred             EEEEEcHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHhheeec-cCcEEEeCCcceEEEEECCCCeEECc
Confidence            999999999999999973       2799999999999999999999999996 46899999999999999999999999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCC-CCCCCCeEeecCCCceEEEEecCceeEEEEc-CCC
Q 012955          359 LQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLG-MFGVDRFDAILPPGQGAIMAVGASKPTVVAD-ADG  436 (452)
Q Consensus       359 I~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG-~~Gv~~f~pii~ppq~aiL~vG~i~~~~v~~-~dg  436 (452)
                      |||+|+|||.||++++++|++|+|+|+|+++||+||||||||+| |||+.+|+|||||||+||||||+++++||+. .||
T Consensus       417 Ir~ad~~sl~eIa~ei~~L~~kAr~~kL~~~dl~GGTfTISNlGg~~G~~~ftpIInpPqvaILgvG~i~~~pvv~~~~g  496 (539)
T PLN02744        417 VKDADKKGLSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSNLGGPFGIKQFCAIINPPQSAILAVGSAEKRVIPGSGPD  496 (539)
T ss_pred             CCCcccCCHHHHHHHHHHHHHHHHcCCCChhhcCCceEEEeCCCcccccceeeccccCCcEEEEEcccceeEeEEeccCC
Confidence            99999999999999999999999999999999999999999998 8999999999999999999999999999983 479


Q ss_pred             cEEEEeEEEEEEEe
Q 012955          437 FFGVKSKMLVSLIS  450 (452)
Q Consensus       437 ~i~~~~~m~ltlt~  450 (452)
                      +|++|++|+|||||
T Consensus       497 ~i~~r~~m~lsLs~  510 (539)
T PLN02744        497 QYNFASFMSVTLSC  510 (539)
T ss_pred             eEEEeeeeEEeEec
Confidence            99999999999998

>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]

Probab=100.00  E-value=2.2e-83  Score=649.44  Aligned_cols=392  Identities=42%  Similarity=0.608  Sum_probs=327.9

Q ss_pred             cceeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCC-CccCCCCeEEEEe
Q 012955           55 QSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEG-ESAPVGAAIGILA  133 (452)
Q Consensus        55 ~~~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G-~~v~~G~~l~~i~  133 (452)
                      .+.++.|.||.|+++|++|.|++|.++|||++++||+||||||||++|++|++++|+|.+|+++|| ..|++|.+||+|.
T Consensus        35 ~p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiiv  114 (470)
T KOG0557|consen   35 LPAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIV  114 (470)
T ss_pred             CCcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEe
Confidence            789999999999999999999999999999999999999999999999999999999999999999 7999999999999


Q ss_pred             cchhhHHHHHhhhhccC-CCCCCCCCCCCCCCC---CCCCCC--CC-CCCCCCCCCCCccccChhHHHHHhhcCCCcccc
Q 012955          134 ETEAEVAQAKAKAASAG-AAAPASHPVTSTPVP---AVSPPE--PK-KVAESAPSGPRKTVATPYAKKLLKQHKVDINSV  206 (452)
Q Consensus       134 ~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~---~~~~~~--~~-~~~~~~~~~~~~~~asP~aRklA~e~gIdL~~V  206 (452)
                      +.+++++.++.+..+.+ .......+++++++.   .+.|.+  .+ .+.+..+..++++.+||++|+||.|+|+||+.|
T Consensus       115 e~e~di~~~k~~k~~~s~~~~~~~~~~~~app~~~~~~~Ps~~~~~~~~~p~~~~~~~r~~asP~Ak~la~e~~l~ls~i  194 (470)
T KOG0557|consen  115 EDEDDIAAFKLPKDEASSGEQSPSAAPPPAPPKVAKPEAPSAPSKPSTSQPVKAKNGGRVFASPLAKKLAEEKGLELSSI  194 (470)
T ss_pred             cccccHHHhhccccccccccCCcccCCCCCCCcccccCCCCCCccccccccCCcCCCCceecChHHHHHHHHhCCccccC
Confidence            99999988876654211 111111111111110   011100  01 011111222569999999999999999999999


Q ss_pred             ccCCCCcccchhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhc-CCccEEEE
Q 012955          207 VGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRV  285 (452)
Q Consensus       207 ~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~rk~ia~~m~~S-~~iP~~~~  285 (452)
                      .||||+|||++.||++|++..........+...+.  .+  .+......++++++|++.||+.|+++|.+| ++|||||+
T Consensus       195 ~gtGP~Gri~k~Di~~~v~~~~~k~~~~~~~~~~~--~~--~~a~~~~~~~~~diP~s~mr~viakrl~eSk~~IPh~yv  270 (470)
T KOG0557|consen  195 PGTGPHGRILKGDIEKHVGSGKKKSAKAPKASAPP--PA--PAAPPVSLPGYEDIPVSNMRRVIAKRLLESKQTIPHYYV  270 (470)
T ss_pred             cCcCCCceeehhhHHHhhcccccccccCCCccCCC--cC--ccCCcCCCCcccccccchhhhhhhhhhhhhhcCCCeEEE
Confidence            99999999999999999986332110000000010  00  001112233478999999999999999999 99999999


Q ss_pred             EEEEechHHHHHHHHhC----CCCCCHHHHHHHHHHHHHhhCCcCcceeeCCCeEEEcCCccEEEEEecCCCeEeeeecC
Q 012955          286 GYPIITDALDALYEKVK----PKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQD  361 (452)
Q Consensus       286 ~~eid~~~l~~lr~~~~----~~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~  361 (452)
                      .+++++++|+++|++++    ..++|+++||+||++.||+++|+.|++|.++..|+++++|||.+||++++||++|+|+|
T Consensus       271 t~~~~~d~ll~~r~~ln~~~~~~~vsvndliiKAaa~al~~vPevNs~w~~~~~i~~~~~VdisvAVat~~GLitPii~n  350 (470)
T KOG0557|consen  271 TVDVNLDKLLALREKLNFEKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDELVIRQLSSVDISVAVATPNGLITPIIQN  350 (470)
T ss_pred             eeeeehHHHHHHHHHhhhcccCcccchhHHHHHHHHHHHhcCCcccceecCCccccccCcCChhheeeccCcccchhhhh
Confidence            99999999999999999    44899999999999999999999999998767899999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCCCceEEEEecCceeEEEE--cCCCcEE
Q 012955          362 ADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVA--DADGFFG  439 (452)
Q Consensus       362 a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~ppq~aiL~vG~i~~~~v~--~~dg~i~  439 (452)
                      ++.+++.+|++++++|..|+|.|+|.|+||+|||||||||||||++.|+.||||||.|||+||+.++.+|.  +.++.+.
T Consensus       351 a~~kgl~~is~~vkel~~kAr~~kL~Pee~qgGtftiSNLGmf~V~~F~AiinPpq~~ILavg~~~~~~v~d~~~~~~~~  430 (470)
T KOG0557|consen  351 ADAKGLSTISSKVKELAQKAREGKLQPEEFQGGTFTLSNLGMFGVDMFTAIINPPQADILAVGAATPSVVPDANGPEKFS  430 (470)
T ss_pred             cccccHHHHHHHHHHHHHHHhhccCCcccccCCceeHhhccCcCccccccccCCchhhhhhcccCccccccCCCcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999995  5567899


Q ss_pred             EEeEEEEEEEe
Q 012955          440 VKSKMLVSLIS  450 (452)
Q Consensus       440 ~~~~m~ltlt~  450 (452)
                      ..++|+|||+|
T Consensus       431 ~~~~m~VTls~  441 (470)
T KOG0557|consen  431 VINAMTVTLSA  441 (470)
T ss_pred             eeeeeEEEEec
Confidence            99999999997

>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=100.00  E-value=4.1e-81  Score=652.58  Aligned_cols=385  Identities=36%  Similarity=0.579  Sum_probs=304.0

Q ss_pred             EEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCc-cCCCCeEEEEecchhh
Q 012955           60 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGES-APVGAAIGILAETEAE  138 (452)
Q Consensus        60 ~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~-v~~G~~l~~i~~~~~~  138 (452)
                      +|.||+||++|+||+|++|++++||.|++||+||+||+||+.++|+||++|+|.++++++|+. +++|++|++|++.+++
T Consensus         1 ~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~~~   80 (435)
T TIGR01349         1 KITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEKED   80 (435)
T ss_pred             CcccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccCCc
Confidence            378999999999999999999999999999999999999999999999999999999999999 9999999999754432


Q ss_pred             HHHHHhhh-hccCCCC--CCCCCCC-CCCCCCC--CCCCCC-CCC-CCC---CCCCCccccChhHHHHHhhcCCCccccc
Q 012955          139 VAQAKAKA-ASAGAAA--PASHPVT-STPVPAV--SPPEPK-KVA-ESA---PSGPRKTVATPYAKKLLKQHKVDINSVV  207 (452)
Q Consensus       139 ~~~~~~~~-~~~~~~~--~~~~~p~-~~~~~~~--~~~~~~-~~~-~~~---~~~~~~~~asP~aRklA~e~gIdL~~V~  207 (452)
                      .+...... .+....+  +.+..+. +.....+  .+.... ... +..   ...+.++++||+||+||+||||||+.|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vR~lA~e~gvdl~~v~  160 (435)
T TIGR01349        81 VADAFKNYKLESSASAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVA  160 (435)
T ss_pred             cccccccccccccccCCCCcccccCCCCcCCCCCCCccccccccccccccccccccccccCCHHHHHHHHHcCCCHhHCC
Confidence            21000000 0000000  0000000 0000000  000000 000 000   1112357899999999999999999999


Q ss_pred             cCCCCcccchhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhc-CCccEEEEE
Q 012955          208 GTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVG  286 (452)
Q Consensus       208 gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~  286 (452)
                      |||++|||+++||++|+.......  +.  +...+................+.+||++|||+|+++|++| +++||||++
T Consensus       161 gtG~~GrI~~~DV~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~v~ls~~rk~ia~~m~~S~~~ip~~~~~  236 (435)
T TIGR01349       161 GSGPNGRIVKKDIESFVPQSPASA--NF--QAAATTPATKKAAAPVSTGSYEDVPLSNIRKIIAKRLLESKQTIPHYYVS  236 (435)
T ss_pred             CCCCCCceeHHHHHHHHhcccccC--CC--ccccccccccccCCCccCCcceeecccHHHHHHHHHHHHHHhhCCeEEEE
Confidence            999999999999999985421100  00  0000000000000000111235689999999999999999 899999999


Q ss_pred             EEEechHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHhhCCcCcceeeCCCeEEEcCCccEEEEEecCCCeEeeeecC
Q 012955          287 YPIITDALDALYEKVKP-----KGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQD  361 (452)
Q Consensus       287 ~eid~~~l~~lr~~~~~-----~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~  361 (452)
                      .++|+++|+++|+++++     .++|+++||+||+++||++||.||++|++ ++|+++++|||||||++++||++|||||
T Consensus       237 ~evd~t~l~~~r~~~~~~~~~~~klt~~~~l~kA~a~AL~~~P~~Na~~~~-~~i~~~~~vnigvAv~~~~GL~vPvi~~  315 (435)
T TIGR01349       237 IECNVDKLLALRKELNAMASEVYKLSVNDFIIKASALALREVPEANSSWTD-NFIRRYKNVDISVAVATPDGLITPIVRN  315 (435)
T ss_pred             EEEEhHHHHHHHHHHHhhhhcCCcccHHHHHHHHHHHHHHhCcHhheEEeC-CeEEEeCCeeEEEEEECCCCeEECCCCC
Confidence            99999999999999984     37999999999999999999999999975 6899999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCCCceEEEEecCceeEEEEcCCCc---E
Q 012955          362 ADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGF---F  438 (452)
Q Consensus       362 a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~ppq~aiL~vG~i~~~~v~~~dg~---i  438 (452)
                      +|+|||.||++++++|++|+|+|+|+++||+||||||||+||||+.+|+|||||||+||||||+++++||++ ||+   |
T Consensus       316 a~~~sl~eia~~i~~l~~~ar~~~L~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aIlgvG~i~~~pv~~-~~~~~~i  394 (435)
T TIGR01349       316 ADAKGLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLGMFGIKDFTAIINPPQACILAVGAVEDVAVVD-NDEEKGF  394 (435)
T ss_pred             cccCCHHHHHHHHHHHHHHHhcCCCChhhcCCCeEEEecCCccCccceECccCCCceEEEEcccceEEeEEe-CCcccee
Confidence            999999999999999999999999999999999999999999999999999999999999999999999986 566   9


Q ss_pred             EEEeEEEEEEEe
Q 012955          439 GVKSKMLVSLIS  450 (452)
Q Consensus       439 ~~~~~m~ltlt~  450 (452)
                      ++|++|+|+|||
T Consensus       395 ~~~~~m~lsls~  406 (435)
T TIGR01349       395 AVASIMSVTLSC  406 (435)
T ss_pred             EEeeeEEEeEee
Confidence            999999999998

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=100.00  E-value=5.7e-81  Score=668.19  Aligned_cols=385  Identities=26%  Similarity=0.376  Sum_probs=305.5

Q ss_pred             eEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchh
Q 012955           58 IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA  137 (452)
Q Consensus        58 ~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~  137 (452)
                      .++|+||+||+ |+||+|++|+|++||.|++||.||+||+||+.++|+||++|+|.++++++|+.|++|++|+.|++.++
T Consensus       116 ~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~  194 (546)
T TIGR01348       116 VQEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSVAGS  194 (546)
T ss_pred             ceEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEecCCC
Confidence            47999999999 99999999999999999999999999999999999999999999999999999999999999976443


Q ss_pred             hHHHHHhhhhccCCCCCCCCCCCCCC---CCCCCCCCCCCCCC--CCCCCCCcc-ccChhHHHHHhhcCCCccccccCCC
Q 012955          138 EVAQAKAKAASAGAAAPASHPVTSTP---VPAVSPPEPKKVAE--SAPSGPRKT-VATPYAKKLLKQHKVDINSVVGTGP  211 (452)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~--~~~~~~~~~-~asP~aRklA~e~gIdL~~V~gtG~  211 (452)
                      +......  ....  .+....+.++.   ...+.+........  .....+.++ ++||+||+||+||||||+.|.|||+
T Consensus       195 ~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~  270 (546)
T TIGR01348       195 TPATAPA--PASA--QPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKGTGI  270 (546)
T ss_pred             CcccccC--cccc--cccCCCCccccccccCCCCCCCccCcccccccccccccccCCCHHHHHHHHHcCCCHhhCCCCCC
Confidence            2110000  0000  00000010000   00000000000000  001112345 7999999999999999999999999


Q ss_pred             CcccchhhHHHhhccCCC-CCCCCCCCCCCCCCCCCCCCCCC--CCCCCCceeccchhhHHHHHHhhhc-CCccEEEEEE
Q 012955          212 FGRITPEDVEKAAGIAPS-KSVAPSAAPAALPKPAPAAAPAA--PLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGY  287 (452)
Q Consensus       212 ~GrI~~~DV~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~~  287 (452)
                      +|||+++||++|+..... .+..+.+  .+.+..........  ......+.+||++|||.|+++|.+| +++||||++.
T Consensus       271 ~GrI~~~DV~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~rk~ia~~m~~S~~~iPh~~~~~  348 (546)
T TIGR01348       271 KGRILREDVQRFVKEPSVRAQAAAAS--AAGGAPGALPWPNVDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHFD  348 (546)
T ss_pred             CCeEeHHHHHHHhhccccccCccccc--ccCCccccCCCccccccccCcceeeecchHHHHHHHHHHHHhhcCCEEEEEE
Confidence            999999999999753211 0000000  00000000000000  0001235689999999999999999 8999999999


Q ss_pred             EEechHHHHHHHHhCCC------CCCHHHHHHHHHHHHHhhCCcCcceeeC-CCeEEEcCCccEEEEEecCCCeEeeeec
Q 012955          288 PIITDALDALYEKVKPK------GVTMTALLAKAAAMALVQHPVVNASCKD-GKSFTYNANINIAVAVAINGGLITPVLQ  360 (452)
Q Consensus       288 eid~~~l~~lr~~~~~~------~vs~t~~l~kA~a~AL~~~P~~Ns~~~~-~~~i~~~~~vnIgvAV~~~~GL~vPVI~  360 (452)
                      ++|+++|+++|+++++.      ++|+++||+||++.||++||.||++|++ +++|+++++|||||||++++||++||||
T Consensus       349 evdvt~l~~~r~~l~~~~~~~g~kls~~~~l~kA~~~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~vPvi~  428 (546)
T TIGR01348       349 KADITEMEAFRKQQNAAVEKEGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVDTPNGLLVPVIK  428 (546)
T ss_pred             EEEcHHHHHHHHHHHhhhhhcCCcccHHHHHHHHHHHHHHhCChhhEEEeCCCCEEEEeCCcCEEEEEECCCCeEECCcC
Confidence            99999999999999852      7999999999999999999999999974 3679999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCCCceEEEEecCceeEEEEcCCCcEEE
Q 012955          361 DADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGV  440 (452)
Q Consensus       361 ~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~ppq~aiL~vG~i~~~~v~~~dg~i~~  440 (452)
                      |+|+|||.+|++++++|++|+|+|+|+++||+||||||||+||||+++|+|||||||+||||||+++++|+++ ||++++
T Consensus       429 ~a~~~sl~~ia~~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~~piin~Pq~aIl~vg~~~~~p~~~-~~~~~~  507 (546)
T TIGR01348       429 DVDRKGITELALELSDLAKKARDGKLTPDEMQGACFTISSLGGIGGTAFTPIVNAPEVAILGVSKSGMEPVWN-GKEFEP  507 (546)
T ss_pred             CcccCCHHHHHHHHHHHHHHHhcCCCCHHHhCCCeEEEeCCCCCCCcceECCCCCCceEEEEcccceEEeEEE-CCEEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999996 789999


Q ss_pred             EeEEEEEEEe
Q 012955          441 KSKMLVSLIS  450 (452)
Q Consensus       441 ~~~m~ltlt~  450 (452)
                      |++|+|||||
T Consensus       508 ~~~m~ltls~  517 (546)
T TIGR01348       508 RLMLPLSLSY  517 (546)
T ss_pred             EEEEEEeEec
Confidence            9999999998

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>PLN02528 2-oxoisovalerate dehydrogenase E2 component

Probab=100.00  E-value=8e-81  Score=647.08  Aligned_cols=374  Identities=25%  Similarity=0.359  Sum_probs=302.1

Q ss_pred             EEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchhhHH
Q 012955           61 IFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAEVA  140 (452)
Q Consensus        61 i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~~~~  140 (452)
                      ++||+||++|+||+|++|+|++||.|++||+||+||+||+.++++|+++|+|.++++++|+.+++|++|+.|+.++++..
T Consensus         1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~~~~   80 (416)
T PLN02528          1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVEDSQHL   80 (416)
T ss_pred             CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEeccCCccc
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999975443211


Q ss_pred             HHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCcccchhhH
Q 012955          141 QAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDV  220 (452)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV  220 (452)
                      . .. +   . +.+.  .+.  ....+  ....  ....  ....+++||+||+||+||||||+.|+|||++|||+++||
T Consensus        81 ~-~~-~---~-~~~~--~~~--~~~~~--~~~~--~~~~--~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV  144 (416)
T PLN02528         81 R-SD-S---L-LLPT--DSS--NIVSL--AESD--ERGS--NLSGVLSTPAVRHLAKQYGIDLNDILGTGKDGRVLKEDV  144 (416)
T ss_pred             c-cc-C---C-CCCC--CCc--cCCCC--CCCC--cccc--ccCCccCChHHHHHHHHhCCCHHHCCCCCCCCcEeHHHH
Confidence            0 00 0   0 0000  000  00000  0000  0000  112357999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCCCCCCCCCCCCCCCCCC-CCCCCC-CC-CCceeccchhhHHHHHHhhhcCCccEEEEEEEEechHHHHH
Q 012955          221 EKAAGIAPSKSVAPSAAPAALPKPAPAA-APAAPL-LP-GSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDAL  297 (452)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~-~~~~~p~s~~rk~ia~~m~~S~~iP~~~~~~eid~~~l~~l  297 (452)
                      ++|+............+....+...... ....+. .. ..+.+||+++||+|+++|++|+++||||+..+||+++|+++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~ip~~~~~~eid~~~l~~~  224 (416)
T PLN02528        145 LKYAAQKGVVKDSSSAEEATIAEQEEFSTSVSTPTEQSYEDKTIPLRGFQRAMVKTMTAAAKVPHFHYVEEINVDALVEL  224 (416)
T ss_pred             HHHhhcccccccccccccccCCccccccccCCCcccccCcceeeccchHHHHHHHHHHhcCcCCeEEEEEEEEhHHHHHH
Confidence            9997532110000000000000000000 000000 01 13568999999999999999999999999999999999999


Q ss_pred             HHHhCCC------CCCHHHHHHHHHHHHHhhCCcCcceeeCC-CeEEEcCCccEEEEEecCCCeEeeeecCCCCCCHHHH
Q 012955          298 YEKVKPK------GVTMTALLAKAAAMALVQHPVVNASCKDG-KSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLL  370 (452)
Q Consensus       298 r~~~~~~------~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~-~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~ei  370 (452)
                      |+++++.      ++|+++||+||+++||++||.||++|+++ +.+++++++||||||++++||++|||||+|+||+.||
T Consensus       225 r~~~~~~~~~~g~kls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~~vnIgiAv~~~~GL~vPvi~~a~~~sl~eI  304 (416)
T PLN02528        225 KASFQENNTDPTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVPNIKNVQSLSLLEI  304 (416)
T ss_pred             HHHHhhhhhhcCCcccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeCCCCeEEEEeCCCCeEecccCCcccCCHHHH
Confidence            9999741      79999999999999999999999999743 3799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCCCceEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955          371 SQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLIS  450 (452)
Q Consensus       371 a~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~  450 (452)
                      ++++++|++|+|+|+|+++||+||||||||+||||+.+|+|||||||+||||||+++++|++.+||+|++|++|+|||||
T Consensus       305 ~~~~~~l~~~ar~gkL~~~dl~ggTftiSNlG~~G~~~~tpIin~pq~aIlgvG~i~~~pv~~~~g~i~~r~~m~lslt~  384 (416)
T PLN02528        305 TKELSRLQHLAAENKLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEVAIIALGRIQKVPRFVDDGNVYPASIMTVTIGA  384 (416)
T ss_pred             HHHHHHHHHHHHcCCCCHHHhCCceEEEeCCccccCCceECcccCCceEEEEcccceEEeEEeCCCcEEEEeEEEEeEec
Confidence            99999999999999999999999999999999999999999999999999999999999998656999999999999998

>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=2e-78  Score=626.60  Aligned_cols=366  Identities=38%  Similarity=0.548  Sum_probs=308.0

Q ss_pred             eeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955           57 KIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus        57 ~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      +.++|+||+||++|+||+|++|+|++||.|++||+|+||||||+++||+||++|+|.+|++++|++|++|++|++|++++
T Consensus         1 m~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~   80 (404)
T COG0508           1 MAIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEEG   80 (404)
T ss_pred             CCceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEecCC
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999998876


Q ss_pred             hhHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCcccc
Q 012955          137 AEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRIT  216 (452)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aRklA~e~gIdL~~V~gtG~~GrI~  216 (452)
                      ++..     +.+     .....+..+   .+  +..+  .+......++..+||++|+||+|+||||.++.|||++|||+
T Consensus        81 ~~~~-----a~~-----~~~~~~~~~---~~--~~~~--~~~~~~~~~~~~asP~~r~la~e~gidl~~v~gtG~~gri~  143 (404)
T COG0508          81 ADAP-----AAA-----EAPPEPAAA---AP--ASAP--ATAASAAAGRVLASPAVRRLAREAGIDLSKVKGTGPGGRIT  143 (404)
T ss_pred             Cccc-----ccC-----cccCCcccc---Cc--Cccc--CccccccccccccCcchhhhhhhcCCCHHHcCCcCCCCcee
Confidence            5420     000     000000000   00  0000  00000011568999999999999999999999999999999


Q ss_pred             hhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhc-CCccEEEEEEEEechHHH
Q 012955          217 PEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALD  295 (452)
Q Consensus       217 ~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l~  295 (452)
                      ++|++.++.......      ..+.  ...  +........++++||+++||.|+++|.+| .++||+|.+.++|++.|.
T Consensus       144 ~~d~~~~~~~~~~~~------~~~~--~~~--~~~~~~~~~~~~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~t~l~  213 (404)
T COG0508         144 KKDVEAAVAEKAAAA------AAPA--PAA--AAPASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLM  213 (404)
T ss_pred             ccchhhhcccccccc------cccc--ccc--CCcccccCCceeeecccHHHHHHHHHHHHHhhCCeEEEEeeecHHHHH
Confidence            999999987641100      0000  000  00001223457899999999999999999 899999999999999999


Q ss_pred             HHHHHhCC------CCCCHHHHHHHHHHHHHhhCCcCcceeeCCC-eEEEcCCccEEEEEecCCCeEeeeecCCCCCCHH
Q 012955          296 ALYEKVKP------KGVTMTALLAKAAAMALVQHPVVNASCKDGK-SFTYNANINIAVAVAINGGLITPVLQDADKLDLY  368 (452)
Q Consensus       296 ~lr~~~~~------~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~-~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~  368 (452)
                      ++|++++.      .++|+++||+||++.||++||.+|++|+.++ .+++++++|||+||++++||++|||||+|++++.
T Consensus       214 ~lr~~~~~~~~~~g~klt~~~f~~kA~~~Alk~~P~~Na~~~~~~~~iv~~~~~~igiAv~t~~GLvvpVir~a~~~~~~  293 (404)
T COG0508         214 ALRKKLKEEFEKKGVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLA  293 (404)
T ss_pred             HHHHHhhhhhcccCccccHHHHHHHHHHHHHHhCCccceeeccccceEEEeccccEEEEEecCCCeEecceeecccCCHH
Confidence            99999985      2799999999999999999999997775222 7999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCCCceEEEEecCceeEEEEcCCCcEEEEeEEEEEE
Q 012955          369 LLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSL  448 (452)
Q Consensus       369 eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltl  448 (452)
                      +|++++.+|..|+|+|+|+++||+||||||||+|+||...|+||||+||+||||+|++.++||++ +|+|++|+||+|+|
T Consensus       294 ~i~~~i~~la~~aR~~kl~~~e~~ggtftisn~G~~g~~~~tpiin~Pq~aILgv~~~~~rpv~~-~~~i~~~~mm~lsl  372 (404)
T COG0508         294 EIAKEIKDLAKKARDGKLTPEEMQGGTFTISNLGMFGSLMFTPIINPPQVAILGVGAIEERPVVV-GGEIVVRPMMYLSL  372 (404)
T ss_pred             HHHHHHHHHHHHHHhcCcCHHHhCCceEEeecCCccccceecccccChhHheeeccccccCceEe-cCceeeEeeEeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999996 56999999999999


Q ss_pred             Ee
Q 012955          449 IS  450 (452)
Q Consensus       449 t~  450 (452)
                      ||
T Consensus       373 s~  374 (404)
T COG0508         373 SY  374 (404)
T ss_pred             cc
Confidence            98

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=100.00  E-value=2e-75  Score=635.80  Aligned_cols=383  Identities=25%  Similarity=0.342  Sum_probs=304.4

Q ss_pred             eeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955           57 KIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus        57 ~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      +.++|+||+||  |+||+|++|+|++||.|++||.||+||+||++++|+||++|+|.++++++|+.|++|++|+.|.+++
T Consensus       205 ~~~~~~~p~lg--~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~~~~  282 (633)
T PRK11854        205 GVKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEVEG  282 (633)
T ss_pred             CceEEecCCCc--ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEecCC
Confidence            56899999999  9999999999999999999999999999999999999999999999999999999999999997544


Q ss_pred             hhHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCC-C-CCCCCCCCccccChhHHHHHhhcCCCccccccCCCCcc
Q 012955          137 AEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKV-A-ESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGR  214 (452)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~asP~aRklA~e~gIdL~~V~gtG~~Gr  214 (452)
                      ++...  ..  ...  .+....+.+.....+.+.+.+.. . ......+.++++||+||+||++|||||+.|.|||++||
T Consensus       283 ~~~~~--~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~Gr  356 (633)
T PRK11854        283 AAPAA--AP--AKQ--EAAAPAPAAAKAEAPAAAPAAKAEGKSEFAENDAYVHATPLVRRLAREFGVNLAKVKGTGRKGR  356 (633)
T ss_pred             CCccc--cc--ccc--CCCCCCccccccCCCCCCCcccccccccccccCCccCCCchhHHHHHHhCCChhhcCCCCCCCe
Confidence            32100  00  000  00000000000000000000000 0 00011123678999999999999999999999999999


Q ss_pred             cchhhHHHhhccCCC-CCCCCCCCCCCCCCCCCC-C-CCCCCC--CCCCceeccchhhHHHHHHhhhc-CCccEEEEEEE
Q 012955          215 ITPEDVEKAAGIAPS-KSVAPSAAPAALPKPAPA-A-APAAPL--LPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYP  288 (452)
Q Consensus       215 I~~~DV~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~-~~~~~~--~~~~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~~e  288 (452)
                      |+++||++|+..... ....+.+  .+.+...+. . .+..+.  ....+.+||+++||.|+++|.+| +++|||+++.+
T Consensus       357 I~~~DV~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~~ip~~~~~~e  434 (633)
T PRK11854        357 ILKEDVQAYVKDAVKRAEAAPAA--AAAGGGGPGLLPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHVTQFDK  434 (633)
T ss_pred             EeHHHHHHHhhccccccccCCcc--cccccccccccccccccccccCcceEEeCchHHHHHHHHHHHHHhcCCeEEEEeE
Confidence            999999999753211 0000000  000000000 0 000000  11235689999999999999999 79999999999


Q ss_pred             EechHHHHHHHHhCC--------CCCCHHHHHHHHHHHHHhhCCcCcceeeC-CCeEEEcCCccEEEEEecCCCeEeeee
Q 012955          289 IITDALDALYEKVKP--------KGVTMTALLAKAAAMALVQHPVVNASCKD-GKSFTYNANINIAVAVAINGGLITPVL  359 (452)
Q Consensus       289 id~~~l~~lr~~~~~--------~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~-~~~i~~~~~vnIgvAV~~~~GL~vPVI  359 (452)
                      +|+++|+++|++++.        .++|+++||+||+++||++||+||++|++ ++++++++++||||||++++||++|||
T Consensus       435 vD~t~l~~~rk~~~~~~~~~~~g~k~t~~~~likAva~Al~~~P~~Na~~~~~~~~i~~~~~vnigiAV~~~~GL~vPvi  514 (633)
T PRK11854        435 ADITELEAFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAVDTPNGLVVPVF  514 (633)
T ss_pred             EEcHHHHHHHHHHhhhhhhhcccCcccHHHHHHHHHHHHHHhCCHhhEEEecCCCEEEEecccCEEEEEECCCceEEeeE
Confidence            999999999998762        27899999999999999999999999963 568999999999999999999999999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCCCceEEEEecCceeEEEEcCCCcEE
Q 012955          360 QDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFG  439 (452)
Q Consensus       360 ~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~ppq~aiL~vG~i~~~~v~~~dg~i~  439 (452)
                      ||++++||.+|++++++|.+|+|+|+|+++|++||||||||+||||+++|+|||||||+|||++|+++++|+++ +|.++
T Consensus       515 ~~a~~~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggTftISnlG~~G~~~~tpii~ppq~aIlgvG~i~~~p~~~-~~~~~  593 (633)
T PRK11854        515 KDVNKKGIIELSRELMDISKKARDGKLTAGDMQGGCFTISSIGGLGTTHFTPIVNAPEVAILGVSKSAMEPVWN-GKEFA  593 (633)
T ss_pred             CCCccCCHHHHHHHHHHHHHHHHcCCCChHHcCCcEEEEeCCcccCCcceeccccCCceEEEEcccceEEEEEE-CCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999996 68999


Q ss_pred             EEeEEEEEEEe
Q 012955          440 VKSKMLVSLIS  450 (452)
Q Consensus       440 ~~~~m~ltlt~  450 (452)
                      +|++|+|||||
T Consensus       594 ~r~~m~lslt~  604 (633)
T PRK11854        594 PRLMLPLSLSY  604 (633)
T ss_pred             EEEEEEEeEEc
Confidence            99999999998

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=100.00  E-value=4.3e-74  Score=596.26  Aligned_cols=336  Identities=23%  Similarity=0.374  Sum_probs=273.4

Q ss_pred             ceeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955           56 SKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus        56 ~~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      ..+.+|+||+||++|++|+|++|+|++||.|++||+||+||+||++++|+||++|+|.++++++||.|++|++|++|++.
T Consensus        89 ~~m~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~~  168 (463)
T PLN02226         89 GDTVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIISKS  168 (463)
T ss_pred             CCceEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEeccC
Confidence            33479999999999999999999999999999999999999999999999999999999999999999999999999754


Q ss_pred             hhhHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCccc
Q 012955          136 EAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRI  215 (452)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aRklA~e~gIdL~~V~gtG~~GrI  215 (452)
                      +++.+   ..  .     +....+..   ..+.+.+     +.......++.++|++|+.+          .++|+.+. 
T Consensus       169 ~~~~~---~~--~-----~~~~~~~~---~~~~~~~-----~~~~~~~~~v~asp~~r~~~----------~~~~~~~~-  219 (463)
T PLN02226        169 EDAAS---QV--T-----PSQKIPET---TDPKPSP-----PAEDKQKPKVESAPVAEKPK----------APSSPPPP-  219 (463)
T ss_pred             Ccccc---cc--C-----ccCCCCCC---CCCCCCC-----ccccccccCCCcchhhcccc----------CCCCCCCC-
Confidence            32110   00  0     00000000   0000000     00000112456777776532          12222110 


Q ss_pred             chhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhc-CCccEEEEEEEEechHH
Q 012955          216 TPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDAL  294 (452)
Q Consensus       216 ~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l  294 (452)
                                .  .      .  ..    .+    ..+.....+.+|++++||.||++|++| +++||||++.|+|+++|
T Consensus       220 ----------~--~------~--~~----~~----~~~~~~~~~~ipls~~Rk~IA~~M~~S~~tiPh~t~~~evDvt~L  271 (463)
T PLN02226        220 ----------K--Q------S--AK----EP----QLPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNL  271 (463)
T ss_pred             ----------c--c------c--cc----Cc----ccccCCCceeeeChHHHHHHHHHHHHHHhcCCEEEEEEEEEcHHH
Confidence                      0  0      0  00    00    000000135689999999999999999 79999999999999999


Q ss_pred             HHHHHHhCC-------CCCCHHHHHHHHHHHHHhhCCcCcceeeCCCeEEEcCCccEEEEEecCCCeEeeeecCCCCCCH
Q 012955          295 DALYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDL  367 (452)
Q Consensus       295 ~~lr~~~~~-------~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl  367 (452)
                      +++|+++++       .++|+++||+||+++||++||++|++|+ ++.|+++++|||||||++++||++|||||+|+|||
T Consensus       272 ~~lR~~l~~~~~~~~g~klS~~~~liKAva~AL~~~P~lNa~~~-~~~i~~~~~vnIGvAV~t~~GLvVPVIr~ad~~sl  350 (463)
T PLN02226        272 MKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVID-GDDIIYRDYVDISIAVGTSKGLVVPVIRGADKMNF  350 (463)
T ss_pred             HHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhCCHhheEEc-CCEEEEeCcccEEEEEECCCCEEeccCCCcccCCH
Confidence            999999984       1799999999999999999999999996 56899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCCCceEEEEecCceeEEEEcCCCcEEEEeEEEEE
Q 012955          368 YLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVS  447 (452)
Q Consensus       368 ~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~lt  447 (452)
                      .||++++++|++|+|+|+|+++||+||||||||+||||+++|+|||||||+||||||+++++||+. ||+|++|++|+||
T Consensus       351 ~eIa~ei~~L~~kAR~gkL~~~dl~GGTfTISNlG~~Gv~~ftPIInpPqvAILgvG~i~~~pvv~-~g~i~~r~~m~ls  429 (463)
T PLN02226        351 AEIEKTINGLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVV-GGSVVPRPMMYVA  429 (463)
T ss_pred             HHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEECCCcccccceeccccCCcEEEEEcccceEEEEEE-CCEEEEEeEEEEe
Confidence            999999999999999999999999999999999999999999999999999999999999999996 7999999999999


Q ss_pred             EEe
Q 012955          448 LIS  450 (452)
Q Consensus       448 lt~  450 (452)
                      |||
T Consensus       430 Ls~  432 (463)
T PLN02226        430 LTY  432 (463)
T ss_pred             Eec
Confidence            998

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=100.00  E-value=8.2e-73  Score=607.14  Aligned_cols=387  Identities=30%  Similarity=0.443  Sum_probs=304.2

Q ss_pred             eeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955           57 KIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus        57 ~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      .+.+|+||+||+ |+||+|++|+|++||.|++||.|++||+||+.++|+||++|+|.++++++|+.|++|++|+.+.+.+
T Consensus       118 ~~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~~~~  196 (547)
T PRK11855        118 GVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVAA  196 (547)
T ss_pred             CceEEecCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEecCC
Confidence            357999999999 9999999999999999999999999999999999999999999999999999999999999997653


Q ss_pred             hhHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCcc-ccChhHHHHHhhcCCCccccccCCCCcc
Q 012955          137 AEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPE-PKKVAESAPSGPRKT-VATPYAKKLLKQHKVDINSVVGTGPFGR  214 (452)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~asP~aRklA~e~gIdL~~V~gtG~~Gr  214 (452)
                      ++....  ...... ..+....+.++  ..+.... .....+......++. ++||+||+||+||||||+.|.|||++||
T Consensus       197 ~~~~~~--~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~Gr  271 (547)
T PRK11855        197 AAPAAA--AAPAAA-APAAAAAAAPA--PAPAAAAAPAAAAPAAAAAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGR  271 (547)
T ss_pred             Cccccc--cCCCCC-CCccccccCCC--CCCcccccCCccccccccccCCcccCChHHHHHHHHhCCCHHHCcCCCCCCc
Confidence            321000  000000 00000000000  0000000 000000001112244 7999999999999999999999999999


Q ss_pred             cchhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCC--C--CCCCCceeccchhhHHHHHHhhhc-CCccEEEEEEEE
Q 012955          215 ITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAA--P--LLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPI  289 (452)
Q Consensus       215 I~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~~ei  289 (452)
                      |+++||++|+.........+...+...+..........  .  .....+.+||+++||.|+++|++| +++||||++.+|
T Consensus       272 I~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~ev  351 (547)
T PRK11855        272 ITKEDVQAFVKGAMSAAAAAAAAAAAAGGGGLGLLPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDEA  351 (547)
T ss_pred             EeHHHHHHHhhccccccccccccccccccccccccCCccccccccCcceEEeCcHHHHHHHHHHHHHhhcCCeEEEEEEE
Confidence            99999999975321110000000000000000000000  0  001235689999999999999999 799999999999


Q ss_pred             echHHHHHHHHhCC----C--CCCHHHHHHHHHHHHHhhCCcCcceeeC-CCeEEEcCCccEEEEEecCCCeEeeeecCC
Q 012955          290 ITDALDALYEKVKP----K--GVTMTALLAKAAAMALVQHPVVNASCKD-GKSFTYNANINIAVAVAINGGLITPVLQDA  362 (452)
Q Consensus       290 d~~~l~~lr~~~~~----~--~vs~t~~l~kA~a~AL~~~P~~Ns~~~~-~~~i~~~~~vnIgvAV~~~~GL~vPVI~~a  362 (452)
                      |+++|+++|+++++    .  ++||++||+||+++||++||+||++|++ ++.+++++++|||+||++++||++|||+|+
T Consensus       352 d~t~l~~~r~~~~~~~~~~g~k~s~~~~likAv~~al~~~P~ln~~~~~~~~~i~~~~~i~i~~Av~~~~gl~vpvi~~~  431 (547)
T PRK11855        352 DITDLEALRKQLKKEAEKAGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFAVDTPNGLVVPVIKDV  431 (547)
T ss_pred             EChHHHHHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEEEccCCCEEEEeCCccEEEEEECCCccEeCCcCCC
Confidence            99999999999874    1  6999999999999999999999999975 568999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCCCceEEEEecCceeEEEEcCCCcEEEEe
Q 012955          363 DKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKS  442 (452)
Q Consensus       363 ~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~ppq~aiL~vG~i~~~~v~~~dg~i~~~~  442 (452)
                      +++|+.+|+++++++++|+|+|+|.++|++||||||||+|+||.++|+|||||||+||||+|+++++|++. +|.+.+|+
T Consensus       432 ~~~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggtftiSnlg~~g~~~~tpii~~pq~ail~~G~~~~~pv~~-~~~~~~r~  510 (547)
T PRK11855        432 DKKSLLEIAREIAELAKKARDGKLKPDDMQGGCFTISSLGGIGGTAFTPIINAPEVAILGVGKSQMKPVWD-GKEFVPRL  510 (547)
T ss_pred             ccCCHHHHHHHHHHHHHHHHcCCCChHhcCCceEEEeCCccccccceecCcCCCceEEEEcccceEeeeee-CCEEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999774 78999999


Q ss_pred             EEEEEEEe
Q 012955          443 KMLVSLIS  450 (452)
Q Consensus       443 ~m~ltlt~  450 (452)
                      +|+|||+|
T Consensus       511 ~m~lslt~  518 (547)
T PRK11855        511 MLPLSLSY  518 (547)
T ss_pred             EEEEeEEc
Confidence            99999998

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=100.00  E-value=1.2e-72  Score=581.76  Aligned_cols=368  Identities=26%  Similarity=0.376  Sum_probs=283.9

Q ss_pred             cccccccCccccccccCCCCCCCCccccccceeeecceeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 012955           20 SFSSSISTPLKWKSITSFSPSGSSSSRSRRRIFIVQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDK   99 (452)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK   99 (452)
                      |..++....++|-.+..-|++-+...+      ..+..+.+|+||+||++|++|+|++|+|++||.|++||+||+||+||
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK   85 (418)
T PTZ00144         12 PLLSSVKGMFRRFSLRKLQPACSAHFS------KSYFSIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDK   85 (418)
T ss_pred             cccccchhHHHHHhhhccchhhhhhcc------cccccceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcc
Confidence            333444444555544443443222211      23456789999999999999999999999999999999999999999


Q ss_pred             eeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchhhHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 012955          100 ADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESA  179 (452)
Q Consensus       100 ~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  179 (452)
                      ++++|+||++|+|.++++++|+.|++|++|+.|++.+++..   ..  ...   .....+..+   .+...  .      
T Consensus        86 ~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~~~~~~~---~~--~~~---~~~~~~~~~---~~~~~--~------  146 (418)
T PTZ00144         86 VSVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDTGGAPPA---AA--PAA---AAAAKAEKT---TPEKP--K------  146 (418)
T ss_pred             eEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEcCCCcccc---cc--ccc---cCCCCCccC---CCCCC--C------
Confidence            99999999999999999999999999999999975443211   00  000   000000000   00000  0      


Q ss_pred             CCCCCccccChhHHHHHhhcCCCccccccCCCCcccchhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 012955          180 PSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGST  259 (452)
Q Consensus       180 ~~~~~~~~asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (452)
                             ...|.+|++++++++++..+...               .. ...     +  .+.+.  +  .+  ......+
T Consensus       147 -------~~~p~~~~~a~~~~~a~p~vr~~---------------~~-~~~-----~--~~~~~--~--~~--~~~~~~~  190 (418)
T PTZ00144        147 -------AAAPTPEPPAASKPTPPAAAKPP---------------EP-APA-----A--KPPPT--P--VA--RADPRET  190 (418)
T ss_pred             -------CCCCccccccccccCCchhhhcc---------------cc-CCC-----C--CCCCC--C--cc--ccCCCce
Confidence                   00133344444444444333100               00 000     0  00000  0  00  0000134


Q ss_pred             eeccchhhHHHHHHhhhc-CCccEEEEEEEEechHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHhhCCcCcceee
Q 012955          260 VVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNASCK  331 (452)
Q Consensus       260 ~~p~s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l~~lr~~~~~-------~~vs~t~~l~kA~a~AL~~~P~~Ns~~~  331 (452)
                      .+|++++||+||++|++| +++||||++.++|+++|.++|+++++       .++|+++||+||++.||++||++|++|+
T Consensus       191 ~ipls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~l~~~r~~~~~~~~~~~g~klS~~~~liKAva~AL~~~P~~Na~~~  270 (418)
T PTZ00144        191 RVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMELRKEYKDDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYID  270 (418)
T ss_pred             eeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEechHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhheEEc
Confidence            589999999999999999 79999999999999999999999984       1799999999999999999999999996


Q ss_pred             CCCeEEEcCCccEEEEEecCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEe
Q 012955          332 DGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDA  411 (452)
Q Consensus       332 ~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~p  411 (452)
                       ++++++++++||||||++++||++|||||+|++||.||++++++|++|+|+|+|+++||+||||||||+||||+++|+|
T Consensus       271 -~~~i~~~~~vnIgvAV~~~~GL~vPVI~~ad~~sl~eIa~ei~~L~~~ar~g~L~~~e~~GgTfTISNlG~~G~~~~tp  349 (418)
T PTZ00144        271 -GDEIVYRNYVDISVAVATPTGLVVPVIRNCENKSFAEIEKELADLAEKARNNKLTLEDMTGGTFTISNGGVFGSLMGTP  349 (418)
T ss_pred             -CCEEEEecCCCEEEEEECCCCEEEccCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEECCCCCCcceeee
Confidence             4589999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCceEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955          412 ILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLIS  450 (452)
Q Consensus       412 ii~ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~  450 (452)
                      ||||||+||||+|+++++||+. ||++++|++|+|||||
T Consensus       350 IInpPq~aILgvG~i~~~pvv~-~g~i~~r~~m~lsLs~  387 (418)
T PTZ00144        350 IINPPQSAILGMHAIKKRPVVV-GNEIVIRPIMYLALTY  387 (418)
T ss_pred             eecCCceEEEecccceeEeEEE-CCEEEEEeEEEEEEec
Confidence            9999999999999999999996 7999999999999998

>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

Probab=100.00  E-value=1.5e-71  Score=579.29  Aligned_cols=375  Identities=40%  Similarity=0.593  Sum_probs=305.5

Q ss_pred             eEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchh
Q 012955           58 IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA  137 (452)
Q Consensus        58 ~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~  137 (452)
                      ..+++||+||++|++|+|++|+|++||.|++||+|++||+||+.++|+||++|+|.++++++|+.|.+|++|+.|.+.++
T Consensus         2 ~~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~~~   81 (411)
T PRK11856          2 MFEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEEGE   81 (411)
T ss_pred             CeeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999976554


Q ss_pred             -hHHHHHhhhhccCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCccc
Q 012955          138 -EVAQAKAKAASAGAAAPASHPVTSTPVPAVS-PPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRI  215 (452)
Q Consensus       138 -~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~asP~aRklA~e~gIdL~~V~gtG~~GrI  215 (452)
                       +.+....    .....+. ..+...  ..+. ....+.........+.+.++||++|+||+||||||++|.|||++|||
T Consensus        82 ~~~~~~~~----~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~~~gidl~~i~gsG~~Gri  154 (411)
T PRK11856         82 AEAAAAAE----AAPEAPA-PEPAPA--AAAAAAAAPAAAAAPAAPAAAAAKASPAVRKLARELGVDLSTVKGSGPGGRI  154 (411)
T ss_pred             CccccccC----CCCCCCC-CCCCCC--CCCCCCCCCCcccCcccccCCcccCChHHHHHHHHcCCCHHHCcCCCCCCeE
Confidence             2111100    0000000 000000  0000 00000000000011123479999999999999999999999999999


Q ss_pred             chhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhc-CCccEEEEEEEEechHH
Q 012955          216 TPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDAL  294 (452)
Q Consensus       216 ~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l  294 (452)
                      +++||++|+.......    . +...  . + ...........+.+|++++||.|+++|.+| .++|||+++.+||+++|
T Consensus       155 ~~~Dv~~~~~~~~~~~----~-~~~~--~-~-~~~~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P~~~~~~~idvt~l  225 (411)
T PRK11856        155 TKEDVEAAAAAAAPAA----A-AAAA--A-A-AAPPAAAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTAL  225 (411)
T ss_pred             EHHHHHHHHhcccccC----C-CCCC--C-C-CCCCcccCCCceEeeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEhHHH
Confidence            9999999985421100    0 0000  0 0 000000011246789999999999999999 89999999999999999


Q ss_pred             HHHHHHhCCC--CCCHHHHHHHHHHHHHhhCCcCcceeeCCCeEEEcCCccEEEEEecCCCeEeeeecCCCCCCHHHHHH
Q 012955          295 DALYEKVKPK--GVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQ  372 (452)
Q Consensus       295 ~~lr~~~~~~--~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~eia~  372 (452)
                      .++|+++++.  ++|+++||+||+++||++||+||++|.+ +.+++|+++|||+||++++||++|||++++++++.+|++
T Consensus       226 ~~~~k~~~~~~~~ls~~~~~ikav~~Al~~~P~~n~~~~~-~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~ei~~  304 (411)
T PRK11856        226 LALRKQLKAIGVKLTVTDFLIKAVALALKKFPELNASWDD-DAIVLKKYVNIGIAVATDGGLIVPVIRDADKKSLFELAR  304 (411)
T ss_pred             HHHHHHHHhhccCccHHHHHHHHHHHHHHhCcHhheEEeC-CEEEEcCCcCEEEEEECCCCeEeCcCCCcccCCHHHHHH
Confidence            9999999754  8999999999999999999999999974 579999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCCCceEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955          373 KWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLIS  450 (452)
Q Consensus       373 ~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~  450 (452)
                      +++++++++|+|+|.++|+++|||||||+|+||..+|+||||+||+|||++|+++++||+. ||++++|.+|+|+|+|
T Consensus       305 ~~~~~~~~ar~~~l~~~~~~~gtftiSn~G~~g~~~~~Pii~~p~~ail~iG~~~~~~~~~-~g~~~~~~~m~lslt~  381 (411)
T PRK11856        305 EIKDLAEKAREGKLKPEELQGGTFTISNLGMFGGDYFTPIINPPEVAILGVGAIVERPVVV-DGEIVVRKVMPLSLSF  381 (411)
T ss_pred             HHHHHHHHHHcCCCCHHHhCCCeEEEeCCCccCCCceECccCCCceEEEEcccceEEEEEE-CCEEEEEEEEEEeEEe
Confidence            9999999999999999999999999999999999999999999999999999999999986 7999999999999997

>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]

Probab=100.00  E-value=1.5e-69  Score=527.54  Aligned_cols=372  Identities=26%  Similarity=0.396  Sum_probs=310.8

Q ss_pred             ecceeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955           54 VQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (452)
Q Consensus        54 ~~~~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~  133 (452)
                      .......+.+-++|+++.|.++.+|+|+|||.|++-|.||||++||+.++|.+.|+|+|++|+...||.+.+|.+|..++
T Consensus        60 s~~gvv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~e  139 (474)
T KOG0558|consen   60 SNSGVVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLE  139 (474)
T ss_pred             cccceEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeee
Confidence            34457899999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             cchhhHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCc
Q 012955          134 ETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFG  213 (452)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aRklA~e~gIdL~~V~gtG~~G  213 (452)
                      .++.... .+.    .      .+.|...   .+  ..    ... ........+||++||||+|+||||+.|+|||++|
T Consensus       140 ve~~~ds-~e~----s------~es~~vs---~~--~~----~~~-~~~~~~tlaTPaVRrlA~e~~idla~v~gtGKdG  198 (474)
T KOG0558|consen  140 VEDSQDS-PED----S------DESPAVS---LG--ES----KQG-EESLLKTLATPAVRRLAKENGIDLAEVTGTGKDG  198 (474)
T ss_pred             eccCcCC-ccc----C------Ccccccc---CC--CC----chh-hhhccccccCHHHHHHHHHhCCceEeeeccCCCC
Confidence            5432110 000    0      0000000   00  00    000 0112456899999999999999999999999999


Q ss_pred             ccchhhHHHhhccCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCceeccchhhHHHHHHhhhcCCccEEEEEEEE
Q 012955          214 RITPEDVEKAAGIAPSKSVAPSAAPAALPK----PAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPI  289 (452)
Q Consensus       214 rI~~~DV~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~s~~rk~ia~~m~~S~~iP~~~~~~ei  289 (452)
                      ||.|+||++|+.+....-    ..+.+..-    +..+........+....+|+.+.+|+|.+.|++++.||||.+..||
T Consensus       199 RvLKeDvL~fl~q~pg~~----~~~~~~~~a~~~~~~ps~~a~~~~~~Dkt~plrGf~rAMvKtMt~alkiPHF~y~dEI  274 (474)
T KOG0558|consen  199 RVLKEDVLRFLGQVPGFV----TDPSPSEHAVIPGPSPSTKASSNLEADKTVPLRGFSRAMVKTMTEALKIPHFGYVDEI  274 (474)
T ss_pred             cchHHHHHHHhccCCCCc----cCCCCceeecCCCCCCcccccCcccccceeechhHHHHHHHHHHHHhcCCcccccccc
Confidence            999999999998642210    00111100    0000111122233456799999999999999999999999999999


Q ss_pred             echHHHHHHHHhCCC------CCCHHHHHHHHHHHHHhhCCcCcceeeCC-CeEEEcCCccEEEEEecCCCeEeeeecCC
Q 012955          290 ITDALDALYEKVKPK------GVTMTALLAKAAAMALVQHPVVNASCKDG-KSFTYNANINIAVAVAINGGLITPVLQDA  362 (452)
Q Consensus       290 d~~~l~~lr~~~~~~------~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~-~~i~~~~~vnIgvAV~~~~GL~vPVI~~a  362 (452)
                      |+|.|.+||+.+|..      |+|+++||+||++.||.+||.+|++++.. ..|+++...|||||+|++.||+||.|+|+
T Consensus       275 n~~sLvklr~elk~~a~e~~IKltfmPf~iKaaSlaL~kyP~vNss~d~~~e~ii~K~sHNIgvAmdT~~GLvVPNiKN~  354 (474)
T KOG0558|consen  275 NCDSLVKLRQELKENAKERGIKLTFMPFFIKAASLALLKYPIVNSSFDEESENIILKGSHNIGVAMDTEQGLVVPNIKNV  354 (474)
T ss_pred             ChHHHHHHHHHHhhhhhhcCceeeehHHHHHHHHHHHhhCccccchhhhhhhhhhhhcccceeEEecCCCceeccCcccc
Confidence            999999999999853      78999999999999999999999999643 57999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCCCceEEEEecCceeEEEEcCCCcEEEEe
Q 012955          363 DKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKS  442 (452)
Q Consensus       363 ~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~ppq~aiL~vG~i~~~~v~~~dg~i~~~~  442 (452)
                      +.+||.||++++++|.+..+.|+|.++|+.|||||+||+|.+|..+..|+|+|||+||.++|+|+.-|-.++.|++....
T Consensus       355 q~~si~eIakeLnrLq~~g~~~qls~~D~t~GTftLSNIG~IGGtf~~P~i~~PeVAIgAlGrie~vPrFnkk~~V~~a~  434 (474)
T KOG0558|consen  355 QSLSIFEIAKELNRLQELGANGQLSPEDLTGGTFTLSNIGAIGGTFASPVIMPPEVAIGALGRIEKVPRFNKKGEVYPAS  434 (474)
T ss_pred             chhhHHHHHHHHHHHHHhhhcCCcChhhccCceEEeeecccccccccCcccccchhhhhhccccccccccCCCCCEEEeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998889999999


Q ss_pred             EEEEEEEe
Q 012955          443 KMLVSLIS  450 (452)
Q Consensus       443 ~m~ltlt~  450 (452)
                      +|.++++.
T Consensus       435 IM~VswsA  442 (474)
T KOG0558|consen  435 IMMVSWSA  442 (474)
T ss_pred             EEEEEeec
Confidence            99999874

>PRK11857 dihydrolipoamide acetyltransferase; Reviewed

Probab=100.00  E-value=4.3e-65  Score=509.10  Aligned_cols=262  Identities=27%  Similarity=0.400  Sum_probs=225.3

Q ss_pred             cccChhHHHHHhhcCCCccccccCCCCcccchhhHHHhhccCCCCCCCCCCCCCCCCC-CCCC--CCCCC-CCCCCCcee
Q 012955          186 TVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPK-PAPA--AAPAA-PLLPGSTVV  261 (452)
Q Consensus       186 ~~asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~-~~~~~~~~~  261 (452)
                      +++||+||+||+||||||+.|+|||++|||+++||++|+........ +.+ +.+.+. ...+  ..+.. .+....+.+
T Consensus         2 ~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (306)
T PRK11857          2 ILATPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSLKSAPT-PAE-AASVSSAQQAAKTAAPAAAPPKLEGKRE   79 (306)
T ss_pred             cCCCchhHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHhhccccccC-Ccc-ccccccccccccccCCcccccCCCceec
Confidence            57999999999999999999999999999999999999753211000 000 000000 0000  00000 011123568


Q ss_pred             ccchhhHHHHHHhhhc-CCccEEEEEEEEechHHHHHHHHhCCC-------CCCHHHHHHHHHHHHHhhCCcCcceeeC-
Q 012955          262 PFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKPK-------GVTMTALLAKAAAMALVQHPVVNASCKD-  332 (452)
Q Consensus       262 p~s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l~~lr~~~~~~-------~vs~t~~l~kA~a~AL~~~P~~Ns~~~~-  332 (452)
                      |++++|+.|+++|++| +++|||++..+||+++|+++|+++++.       ++|+++||+||++.||++||.+|++|++ 
T Consensus        80 ~ls~~R~~ia~~M~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~~Na~~~~~  159 (306)
T PRK11857         80 KVAPIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEA  159 (306)
T ss_pred             cCcHHHHHHHHHHHHhhccCCeEEEEEEEEchHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEEEeCC
Confidence            9999999999999999 799999999999999999999998741       6999999999999999999999999975 


Q ss_pred             CCeEEEcCCccEEEEEecCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEee
Q 012955          333 GKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAI  412 (452)
Q Consensus       333 ~~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pi  412 (452)
                      ++.++++++|||||||++++||++|||+|+|+|||.||+++|++|.+|+|+|+|+++||+||||||||+||||+.+|+||
T Consensus       160 ~~~i~~~~~vnigvAv~~~~GL~vPVI~~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~dl~ggTfTISNlG~~G~~~~tpi  239 (306)
T PRK11857        160 TSELVYPDTLNLGIAVDTEAGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGSVGSLYGVPV  239 (306)
T ss_pred             CCEEEEcCCccEEEEEECCCCEEeCCcCCcCcCCHHHHHHHHHHHHHHHHcCCCChhhcCCccEEEeCCCCCCccceecc
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955          413 LPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLIS  450 (452)
Q Consensus       413 i~ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~  450 (452)
                      |||||+||||+|+++++|++. ||++++|++|+|||||
T Consensus       240 In~pq~aILgvG~i~~~pvv~-~g~i~~r~~m~lslt~  276 (306)
T PRK11857        240 INYPELAIAGVGAIIDKAIVK-NGQIVAGKVMHLTVAA  276 (306)
T ss_pred             cCCCccceeecccceEEeEEE-CCEEEEeeeeEEeEec
Confidence            999999999999999999995 8999999999999997

>PRK14843 dihydrolipoamide acetyltransferase; Provisional

Probab=100.00  E-value=4.2e-65  Score=517.23  Aligned_cols=263  Identities=30%  Similarity=0.476  Sum_probs=226.8

Q ss_pred             CccccChhHHHHHhhcCCCccccccCCCCcccchhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceecc
Q 012955          184 RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPF  263 (452)
Q Consensus       184 ~~~~asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  263 (452)
                      .++++||+||+||+||||||+.|.|||++|||+++||++|+........ ..+ +.+.+.....+.. .......+.+|+
T Consensus        47 ~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~-~~~~~~~~~v~l  123 (347)
T PRK14843         47 NVVRISPLAKRIALEHNIAWQEIQGTGHRGKIMKKDVLALLPENIENDS-IKS-PAQIEKVEEVPDN-VTPYGEIERIPM  123 (347)
T ss_pred             ccccCCchhhHHHHHcCCCHhhCCCCCCCCcccHHHHHHHHhccccCcc-ccC-CCCCccccCCCcc-cccCCcceeeeC
Confidence            4668999999999999999999999999999999999999753211000 000 0000000000000 001112456899


Q ss_pred             chhhHHHHHHhhhc-CCccEEEEEEEEechHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHhhCCcCcceeeC-CC
Q 012955          264 TTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNASCKD-GK  334 (452)
Q Consensus       264 s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l~~lr~~~~~-------~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~-~~  334 (452)
                      +++||.|+++|++| +++||||+..+||+++|+++|+++++       .++|+++||+||++.||++||.||++|++ ++
T Consensus       124 ~~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~~  203 (347)
T PRK14843        124 TPMRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINASLTEDGK  203 (347)
T ss_pred             cHHHHHHHHHHHHHHhhCCeEEEEEEEEchHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeEEEecCCC
Confidence            99999999999999 89999999999999999999999863       17999999999999999999999999975 35


Q ss_pred             eEEEcCCccEEEEEecCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecC
Q 012955          335 SFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILP  414 (452)
Q Consensus       335 ~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~  414 (452)
                      .++++++|||||||++++||++|||||+|+|||.||++++++|++|+|+|+|+++||+||||||||+||||+++|+||||
T Consensus       204 ~i~~~~~vnigvAV~~~~GL~vPVIr~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~d~~GgTfTISNlG~~G~~~~tpIIn  283 (347)
T PRK14843        204 TIITHNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGMFGVQSFGPIIN  283 (347)
T ss_pred             eEEEecccceEEEEecCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCCCcccceecccc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955          415 PGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLIS  450 (452)
Q Consensus       415 ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~  450 (452)
                      |||+||||+|+++++||++ ||++++|++|+|||||
T Consensus       284 pPq~aIlgvG~i~~~pv~~-~g~i~~r~~m~lsls~  318 (347)
T PRK14843        284 QPNSAILGVSSTIEKPVVV-NGEIVIRPIMSLGLTI  318 (347)
T ss_pred             CCceEEEecCCcceeeEEE-CCeEEEEeEEEEEEec
Confidence            9999999999999999996 7999999999999997

>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]

Probab=100.00  E-value=3e-65  Score=499.73  Aligned_cols=340  Identities=25%  Similarity=0.393  Sum_probs=267.2

Q ss_pred             ceeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955           56 SKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus        56 ~~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      ....++..|.++++++||.|.+|++++||.|++++.||+|||||.+++|.||.+|+|.+++|++||+|..|+.|+.|...
T Consensus        70 ts~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~g  149 (457)
T KOG0559|consen   70 TSVVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISPG  149 (457)
T ss_pred             cceeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecCC
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999765


Q ss_pred             hhhHHHHHhhhhccCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCc
Q 012955          136 EAEVAQAKAKAASAGAAAPASHPVTSTP--VPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFG  213 (452)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~asP~aRklA~e~gIdL~~V~gtG~~G  213 (452)
                      .+..... ..       +|.+..|..++  ++.|.+.+.    +      ....+.|.+                     
T Consensus       150 aApa~~~-~~-------apa~~~pk~~~a~~a~p~~~s~----~------~p~~~apv~---------------------  190 (457)
T KOG0559|consen  150 AAPAKGG-AS-------APAKAEPKTAPAAAAPPKPSSK----P------PPKEAAPVA---------------------  190 (457)
T ss_pred             CCCcccc-cc-------CCCccCCCCCCCCCCCCCccCC----C------CccccCCCC---------------------
Confidence            3321110 00       11111111100  000100000    0      000000000                     


Q ss_pred             ccchhhHHHhhccCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCceeccchhhHHHHHHhhhc-CCccEEEE
Q 012955          214 RITPEDVEKAAGIAPSKSVAPSAAPAALPKPAPA-------AAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRV  285 (452)
Q Consensus       214 rI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~p~s~~rk~ia~~m~~S-~~iP~~~~  285 (452)
                                  . .+++ .+...+.++++..++       +.....+...+.+++|++||+.||.+|.+| .+....+.
T Consensus       191 ------------e-~p~~-p~~~~P~~~~a~k~~v~~~~~~p~~~~~~~R~E~RVkMnRmR~RIA~RLKdsQNt~A~LTT  256 (457)
T KOG0559|consen  191 ------------E-SPPA-PSSPEPVPASAKKPSVAQPKPPPSEGATPSRSERRVKMNRMRLRIAERLKDSQNTAAMLTT  256 (457)
T ss_pred             ------------C-CCCC-CCCCCCCCccccCccccCCCCCcccccCCCcchhhhhhHHHHHHHHHHHHhhhhhhhhhhh
Confidence                        0 0000 000000000000000       000111122356899999999999999999 67777888


Q ss_pred             EEEEechHHHHHHHHhCCC-------CCCHHHHHHHHHHHHHhhCCcCcceeeCCCeEEEcCCccEEEEEecCCCeEeee
Q 012955          286 GYPIITDALDALYEKVKPK-------GVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPV  358 (452)
Q Consensus       286 ~~eid~~~l~~lr~~~~~~-------~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~~i~~~~~vnIgvAV~~~~GL~vPV  358 (452)
                      +.||||++|+++|+++++.       |+.|+.+|+||++.||++.|.+|+.++ |+.|+|++++||+|||++++||++||
T Consensus       257 FNEvDMS~lm~mRk~ykdaf~kKhGvKlGfMs~F~KA~~~Alq~qPvVNavId-g~~iVYRDyvDISvAVaTpkGLVvPV  335 (457)
T KOG0559|consen  257 FNEVDMSNLMEMRKQYKDAFLKKHGVKLGFMSGFSKAAAYALQDQPVVNAVID-GDDIVYRDYVDISVAVATPKGLVVPV  335 (457)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhCceeeehhHHHHHHHHHhhhCcceeeeec-CCeeEEeecceeEEEeecCCceeeee
Confidence            9999999999999999863       688899999999999999999999995 77999999999999999999999999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCCCceEEEEecCceeEEEEcCCCcE
Q 012955          359 LQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFF  438 (452)
Q Consensus       359 I~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~ppq~aiL~vG~i~~~~v~~~dg~i  438 (452)
                      |||++.|++.||..+|..|..|||+|+|..+||.||||||||-|.||..+.||||||||+||||+++|.+|||+. +|++
T Consensus       336 iRnae~Mn~adIE~~i~~L~~KAr~g~laiedM~gGTFTISNGGVfGSL~gTPIINpPQsAILGmHgI~eRPv~v-~G~V  414 (457)
T KOG0559|consen  336 IRNAESMNFADIEKTIAGLGKKARDGKLAIEDMAGGTFTISNGGVFGSLYGTPIINPPQSAILGMHGIKERPVVV-GGQV  414 (457)
T ss_pred             ecccccccHHHHHHHHHHHHHhhccCceeeeeccCceEEEeCCcEeeeeccCcccCCchhhhhhcccccccceee-CCEe
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999997 7999


Q ss_pred             EEEeEEEEEEEe
Q 012955          439 GVKSKMLVSLIS  450 (452)
Q Consensus       439 ~~~~~m~ltlt~  450 (452)
                      ++|+||+|.|||
T Consensus       415 v~RPMMYvALTY  426 (457)
T KOG0559|consen  415 VPRPMMYVALTY  426 (457)
T ss_pred             eeccceEEEeec
Confidence            999999999998

>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2

Probab=100.00  E-value=3.4e-53  Score=409.15  Aligned_cols=193  Identities=39%  Similarity=0.595  Sum_probs=170.2

Q ss_pred             CCceeccchhhHHHHHHhhhc-CCccEEEEEEEEechHHHHHHHHhCCC------CCCHHHHHHHHHHHHHhhCCcCcce
Q 012955          257 GSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKPK------GVTMTALLAKAAAMALVQHPVVNAS  329 (452)
Q Consensus       257 ~~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l~~lr~~~~~~------~vs~t~~l~kA~a~AL~~~P~~Ns~  329 (452)
                      ..+++|++++||+||++|.+| +++||||+..+||+++|+++|+++++.      ++|+++||+||++.||++||.||++
T Consensus         3 ~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~~~~~kis~~~~likAva~AL~~~P~lNa~   82 (231)
T PF00198_consen    3 EETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLALRKELKEAGEEPGGKISITDFLIKAVALALKEHPELNAS   82 (231)
T ss_dssp             SCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHHHHHHHHHHHHTTST-THHHHHHHHHHHHHHHSGGGSEE
T ss_pred             CcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHHHHHhhhHHHhhccCCChhHeeeehHhhhhHHHHHhccc
Confidence            357899999999999999999 599999999999999999999998752      8999999999999999999999999


Q ss_pred             eeCCCeEEEcCCccEEEEEecCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCe
Q 012955          330 CKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRF  409 (452)
Q Consensus       330 ~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f  409 (452)
                      |+++++|++++++||||||++++||++|||+|+|++|+.||+++++++++|+|+|+|+++|++||||||||+|+||+++|
T Consensus        83 ~~~~~~i~~~~~vnIgvAV~~~~GL~vPVIr~a~~~sl~eIa~e~~~l~~~ar~g~l~~~d~~g~TftisNlG~~g~~~~  162 (231)
T PF00198_consen   83 WDGDGEIVLYERVNIGVAVDTPDGLVVPVIRDADKKSLAEIAKELRDLAERAREGKLTPEDLQGGTFTISNLGMFGVESF  162 (231)
T ss_dssp             EETTSEEEEESS--EEEEEEETTEEEEEEETTGGGS-HHHHHHHHHHHHHHHHTT---GGGGSS-SEEEEEGGGTT-SCE
T ss_pred             cccccceeeeeeEEEEEEEEcCCCEEEEEEeCCccccHHHHHHHHhhhhccchhhhhhhhhhhccceeeeecCCCCccee
Confidence            97544599999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCceEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955          410 DAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLIS  450 (452)
Q Consensus       410 ~pii~ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~  450 (452)
                      +|||||||+|||++|+++++|++ +||+++++++|+|||||
T Consensus       163 ~pii~~pq~ail~vG~i~~~p~~-~~~~~~~~~~~~lslt~  202 (231)
T PF00198_consen  163 TPIINPPQVAILGVGAIRDRPVV-EDGEVVVRPVMNLSLTF  202 (231)
T ss_dssp             E----TTSSEEEEEEEEEEEEEE-ETTCEEEEEEEEEEEEE
T ss_pred             EccCCcccceEEEecceEEEEEE-EeccceeeEEEEeEEec
Confidence            99999999999999999999999 58999999999999998

3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....

>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed

Probab=100.00  E-value=2.4e-44  Score=389.30  Aligned_cols=193  Identities=27%  Similarity=0.363  Sum_probs=182.3

Q ss_pred             CceeccchhhHHHHHHhhhcCCccEEEEEEEEechHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHhhCCcCccee
Q 012955          258 STVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNASC  330 (452)
Q Consensus       258 ~~~~p~s~~rk~ia~~m~~S~~iP~~~~~~eid~~~l~~lr~~~~~-------~~vs~t~~l~kA~a~AL~~~P~~Ns~~  330 (452)
                      .+.+|+++++++|+++|..|+++|+++..++|+++.|+++|..+|+       .|+|||+||+||+++||++||.+|++|
T Consensus       115 ~~~~~LrG~a~aiAkNM~aSL~vPtaTsvr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P~mNasy  194 (1228)
T PRK12270        115 DEVTPLRGAAAAVAKNMDASLEVPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFPNMNRHY  194 (1228)
T ss_pred             cceeecccHHHHHHHHHHhhhccCceeeeecccHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCchhhcee
Confidence            4678999999999999999999999999999999999999999973       289999999999999999999999999


Q ss_pred             e--CCC-eEEEcCCccEEEEEecC-----CCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCC
Q 012955          331 K--DGK-SFTYNANINIAVAVAIN-----GGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLG  402 (452)
Q Consensus       331 ~--~~~-~i~~~~~vnIgvAV~~~-----~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG  402 (452)
                      .  ||+ .++++++||||||||++     +||+|||||+||+|++.||.+++++|++|||+|||+++||+||||||||+|
T Consensus       195 ~~~DGKp~iv~~~~VNlGiAVdl~~~dGsRgLVVPvIK~Ad~l~f~ef~~ay~dLV~KAR~gKLt~eD~~GgTFTISN~G  274 (1228)
T PRK12270        195 AEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWAAYEDIVRRARDGKLTADDFQGTTISLTNPG  274 (1228)
T ss_pred             eccCCCceeeccCCcceEEEEecCCCCCCcceeeccccccccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEecCC
Confidence            7  553 59999999999999998     589999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCeEeecCCCceEEEEecCceeEEEEc-----CCCcEEEEeEEEEEEEe
Q 012955          403 MFGVDRFDAILPPGQGAIMAVGASKPTVVAD-----ADGFFGVKSKMLVSLIS  450 (452)
Q Consensus       403 ~~Gv~~f~pii~ppq~aiL~vG~i~~~~v~~-----~dg~i~~~~~m~ltlt~  450 (452)
                      |||+.+|+||||+||+||||||++...+++.     .+|++.++++|+|||||
T Consensus       275 ~iGt~~ftPILnppQ~AILGVGAi~~p~~f~gas~~~l~~i~i~kvMtLTlTy  327 (1228)
T PRK12270        275 GIGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLAELGISKVMTLTSTY  327 (1228)
T ss_pred             cccccceeeeecCCceEEEeccccccCceecCcccccccccceeeeEEeeeec
Confidence            9999999999999999999999999888873     24689999999999997

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=99.76  E-value=2.7e-18  Score=174.44  Aligned_cols=120  Identities=33%  Similarity=0.522  Sum_probs=102.9

Q ss_pred             eEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchh
Q 012955           58 IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA  137 (452)
Q Consensus        58 ~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~  137 (452)
                      ..+|+||+||++|+||+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.+++.+.
T Consensus         2 ~~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~~~   81 (371)
T PRK14875          2 ITPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADAEV   81 (371)
T ss_pred             ceEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecCCC
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999965321


Q ss_pred             hHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCcccch
Q 012955          138 EVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITP  217 (452)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aRklA~e~gIdL~~V~gtG~~GrI~~  217 (452)
                      .                .           +               .....++|++++++++ ++++..+.+++..+++..
T Consensus        82 ~----------------~-----------~---------------~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~  118 (371)
T PRK14875         82 S----------------D-----------A---------------EIDAFIAPFARRFAPE-GIDEEDAGPAPRKARIGG  118 (371)
T ss_pred             C----------------c-----------c---------------cccccccchhhhcccc-ccchhhccCCCCcceEcC
Confidence            0                0           0               0123578888888888 899998888888777765


Q ss_pred             hhH
Q 012955          218 EDV  220 (452)
Q Consensus       218 ~DV  220 (452)
                      .++
T Consensus       119 ~~i  121 (371)
T PRK14875        119 RTV  121 (371)
T ss_pred             cEE
Confidence            555

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=99.76  E-value=1.9e-18  Score=138.28  Aligned_cols=74  Identities=38%  Similarity=0.691  Sum_probs=72.1

Q ss_pred             EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL  132 (452)
Q Consensus        59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i  132 (452)
                      .+|++|.+|..+.+++|.+|++++||.|++||+||+||+||+.++|+||++|+|.++++++|+.|..|++|+.|
T Consensus         1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I   74 (74)
T PF00364_consen    1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII   74 (74)
T ss_dssp             EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred             CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999986

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>PRK06748 hypothetical protein; Validated

Probab=99.65  E-value=7.4e-16  Score=125.34  Aligned_cols=62  Identities=18%  Similarity=0.313  Sum_probs=60.4

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEe-CceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVES-DKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE  134 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vet-dK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~  134 (452)
                      |+|.+|++++||.|++||+|++||| ||+.++|+||.+|+|.++++++||.|++|++|+.|++
T Consensus        13 G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~   75 (83)
T PRK06748         13 GKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVRD   75 (83)
T ss_pred             EEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEEC
Confidence            9999999999999999999999999 8999999999999999999999999999999999954

>PRK11892 pyruvate dehydrogenase subunit beta; Provisional

Probab=99.61  E-value=2.4e-14  Score=151.25  Aligned_cols=79  Identities=44%  Similarity=0.764  Sum_probs=75.3

Q ss_pred             EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCC-ccCCCCeEEEEecchh
Q 012955           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGE-SAPVGAAIGILAETEA  137 (452)
Q Consensus        59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~-~v~~G~~l~~i~~~~~  137 (452)
                      .+|+||+||++|+||+|.+|+|++||.|++||.|++|||||++++|+|+.+|+|.++++++|+ .|++|++|++|+++++
T Consensus         3 ~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~~   82 (464)
T PRK11892          3 IEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEGE   82 (464)
T ss_pred             cceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCCC
Confidence            589999999999999999999999999999999999999999999999999999999999995 7999999999976554

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=99.57  E-value=1.4e-14  Score=114.83  Aligned_cols=61  Identities=25%  Similarity=0.476  Sum_probs=59.8

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~  133 (452)
                      |+|.+|++++||.|++||.|++||+||++++|+||.+|+|.++++++|+.+..|++|+.|+
T Consensus        11 G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~   71 (71)
T PRK05889         11 ASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS   71 (71)
T ss_pred             EEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence            9999999999999999999999999999999999999999999999999999999999874

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=99.52  E-value=7.2e-14  Score=110.87  Aligned_cols=72  Identities=29%  Similarity=0.548  Sum_probs=69.5

Q ss_pred             EEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955           61 IFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL  132 (452)
Q Consensus        61 i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i  132 (452)
                      |.+|+++.++.+|++.+|++++||.|++||+|+++|+||+.++|+||.+|+|.+++++.|+.+..|+.|+.|
T Consensus         2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i   73 (73)
T cd06663           2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI   73 (73)
T ss_pred             cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence            678999999999999999999999999999999999999999999999999999999999999999999875

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=99.49  E-value=7.8e-14  Score=125.05  Aligned_cols=61  Identities=21%  Similarity=0.493  Sum_probs=60.1

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~  133 (452)
                      |++.+.+|++||+|++||.||.||.|||+++|+||.+|+|.+|++++||.|..|++|+.|.
T Consensus        79 Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~  139 (140)
T COG0511          79 GTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE  139 (140)
T ss_pred             eEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEec
Confidence            9999999999999999999999999999999999999999999999999999999999985

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=99.47  E-value=1.4e-13  Score=151.00  Aligned_cols=75  Identities=29%  Similarity=0.432  Sum_probs=72.8

Q ss_pred             EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus        59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      .+|.||+||  |+||+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|++|+++
T Consensus         3 ~~i~~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~~   77 (633)
T PRK11854          3 IEIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFESA   77 (633)
T ss_pred             ceEeeCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEecc
Confidence            479999999  999999999999999999999999999999999999999999999999999999999999999765

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.46  E-value=2.6e-13  Score=107.15  Aligned_cols=61  Identities=25%  Similarity=0.383  Sum_probs=59.9

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~  133 (452)
                      |+|.+|++++||+|++||+|++||+||+.+++.++.+|+|.++++++|+.|..|++|+.|+
T Consensus        10 G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie   70 (70)
T PRK08225         10 GNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE   70 (70)
T ss_pred             EEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence            9999999999999999999999999999999999999999999999999999999999884

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=99.43  E-value=3.5e-13  Score=146.64  Aligned_cols=77  Identities=32%  Similarity=0.613  Sum_probs=74.6

Q ss_pred             EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus        59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      .+|.||+||.+|++|+|++|+|++||.|++||+||+||+||+.++|+|+.+|+|.++++++|+.|++|++|+.|...
T Consensus         3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~~   79 (590)
T TIGR02927         3 FSVEMPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGEA   79 (590)
T ss_pred             eeEECCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEeec
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999754

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.37  E-value=2.1e-12  Score=113.93  Aligned_cols=60  Identities=20%  Similarity=0.377  Sum_probs=59.2

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL  132 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i  132 (452)
                      |+|.+|++++||.|++||.|+++|+||++++|.||++|+|.++++++||.|..|++|+.|
T Consensus        70 G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I  129 (130)
T PRK06549         70 GTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI  129 (130)
T ss_pred             EEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence            999999999999999999999999999999999999999999999999999999999987

>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit

Probab=99.36  E-value=5.2e-13  Score=93.33  Aligned_cols=38  Identities=47%  Similarity=0.670  Sum_probs=34.3

Q ss_pred             ccccChhHHHHHhhcCCCccccccCCCCcccchhhHHH
Q 012955          185 KTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEK  222 (452)
Q Consensus       185 ~~~asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV~~  222 (452)
                      ++.+||+||+||+|+|||+++|.|||++|||+++||++
T Consensus         2 ~i~asP~ar~la~e~gidl~~v~gtG~~GrI~k~Dv~a   39 (39)
T PF02817_consen    2 RIKASPAARKLAAELGIDLSQVKGTGPGGRITKEDVLA   39 (39)
T ss_dssp             SCCCSHHHHHHHHHTT--GGGSSSSSTTSBBCHHHHHH
T ss_pred             CcccCHHHHHHHHHcCCCcccccccCCCCcEeHHHhhC
Confidence            57899999999999999999999999999999999985

Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=99.35  E-value=3e-12  Score=138.59  Aligned_cols=78  Identities=27%  Similarity=0.563  Sum_probs=74.3

Q ss_pred             EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchh
Q 012955           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA  137 (452)
Q Consensus        59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~  137 (452)
                      .+|+||++|+ |++|+|++|+|++||.|++||.||+||+||+.++|+|+++|+|.++++++|+.|..|++|+.|++.+.
T Consensus         3 ~~i~~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~~~~   80 (547)
T PRK11855          3 IEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEAAGA   80 (547)
T ss_pred             ceeecCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEeccccc
Confidence            5799999999 99999999999999999999999999999999999999999999999999999999999999975443

>PRK07051 hypothetical protein; Validated

Probab=99.32  E-value=1.1e-11  Score=100.65  Aligned_cols=69  Identities=25%  Similarity=0.357  Sum_probs=63.5

Q ss_pred             EEEEcCCCCCCCceEEEEE-------EEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEE
Q 012955           59 REIFMPALSSTMTEGKIVS-------WIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGI  131 (452)
Q Consensus        59 ~~i~~P~l~~~~~eg~I~~-------w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~  131 (452)
                      .+|..|.      .|++.+       |++++||.|++||.|+++|+||+.++|+||.+|+|.++++++|+.|..|++|+.
T Consensus         4 ~~~~ap~------~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~   77 (80)
T PRK07051          4 HEIVSPL------PGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLAR   77 (80)
T ss_pred             cEEeCCC------ceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEE
Confidence            4566662      278888       999999999999999999999999999999999999999999999999999999


Q ss_pred             Ee
Q 012955          132 LA  133 (452)
Q Consensus       132 i~  133 (452)
                      ++
T Consensus        78 i~   79 (80)
T PRK07051         78 IE   79 (80)
T ss_pred             Ee
Confidence            84

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.32  E-value=5.2e-12  Score=114.65  Aligned_cols=60  Identities=27%  Similarity=0.503  Sum_probs=59.2

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL  132 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i  132 (452)
                      |+|.+|++++||.|++||.|+++|+|||+++|.||++|+|.++++++|+.|..|++|+.|
T Consensus        93 G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I  152 (153)
T PRK05641         93 GKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL  152 (153)
T ss_pred             eEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence            999999999999999999999999999999999999999999999999999999999987

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=99.31  E-value=1.9e-11  Score=118.22  Aligned_cols=61  Identities=21%  Similarity=0.367  Sum_probs=58.2

Q ss_pred             EEEEE-------EEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955           73 GKIVS-------WIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (452)
Q Consensus        73 g~I~~-------w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~  133 (452)
                      |++.+       |+|++||.|++||.|++||+||+.++|+|+++|+|.++++++|+.|..|++|++|+
T Consensus       206 Gtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE  273 (274)
T PLN02983        206 GTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE  273 (274)
T ss_pred             eEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence            66666       99999999999999999999999999999999999999999999999999999984

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=99.29  E-value=7.3e-12  Score=135.31  Aligned_cols=75  Identities=35%  Similarity=0.593  Sum_probs=72.0

Q ss_pred             EEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955           60 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus        60 ~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      +|+||+||.. .+|+|++|+|++||.|++||+|++||+||+.++|+|+++|+|.++++++|+.|.+|++|++|...
T Consensus         2 ~i~~p~lg~~-~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~~   76 (546)
T TIGR01348         2 EIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEVG   76 (546)
T ss_pred             ceecCCCCCC-CceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEecc
Confidence            6899999987 99999999999999999999999999999999999999999999999999999999999999643

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=99.28  E-value=2.3e-11  Score=93.82  Aligned_cols=61  Identities=26%  Similarity=0.499  Sum_probs=59.0

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955           72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL  132 (452)
Q Consensus        72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i  132 (452)
                      .|+|.+|++++||.|++||.|++++++|+..+|+||++|+|.++++++|+.|..|++|+.|
T Consensus         7 ~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i   67 (67)
T cd06850           7 PGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI   67 (67)
T ss_pred             cEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence            4999999999999999999999999999999999999999999999999999999999875

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=99.24  E-value=1.9e-11  Score=111.49  Aligned_cols=61  Identities=25%  Similarity=0.370  Sum_probs=58.8

Q ss_pred             EEEEE-------EEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955           73 GKIVS-------WIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (452)
Q Consensus        73 g~I~~-------w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~  133 (452)
                      |++.+       |+|++||.|++||.||.||+||+.++|+|+++|+|.+++++.|+.|..|++|+.|+
T Consensus        89 G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~  156 (156)
T TIGR00531        89 GTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE  156 (156)
T ss_pred             EEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence            78886       99999999999999999999999999999999999999999999999999999873

The gene name is accB or fabE.

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=99.22  E-value=4.2e-11  Score=129.76  Aligned_cols=62  Identities=24%  Similarity=0.454  Sum_probs=60.7

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE  134 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~  134 (452)
                      |+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|..|++|+.|+.
T Consensus       534 G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~  595 (596)
T PRK14042        534 GSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV  595 (596)
T ss_pred             eEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence            99999999999999999999999999999999999999999999999999999999999964

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.19  E-value=6e-11  Score=108.17  Aligned_cols=61  Identities=20%  Similarity=0.412  Sum_probs=58.5

Q ss_pred             EEEEE-------EEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955           73 GKIVS-------WIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (452)
Q Consensus        73 g~I~~-------w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~  133 (452)
                      |++..       |+|++||.|++||+||.||+||+..+|+|+++|+|.+++++.|+.|..|++|+.|.
T Consensus        88 G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~  155 (155)
T PRK06302         88 GTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE  155 (155)
T ss_pred             EEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence            77876       99999999999999999999999999999999999999999999999999999873

>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

Probab=99.18  E-value=2.9e-10  Score=87.46  Aligned_cols=73  Identities=47%  Similarity=0.816  Sum_probs=70.3

Q ss_pred             EEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955           60 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL  132 (452)
Q Consensus        60 ~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i  132 (452)
                      ++.+|+++....+|+|.+|+++.|+.|..||.++.++++|+...+.++.+|++.+.++.+|+.+..|++|+.+
T Consensus         2 ~~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~   74 (74)
T cd06849           2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI   74 (74)
T ss_pred             EEECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence            5889999999999999999999999999999999999999999999999999999999999999999999874

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.

>TIGR02712 urea_carbox urea carboxylase

Probab=99.03  E-value=5.1e-10  Score=130.50  Aligned_cols=61  Identities=23%  Similarity=0.422  Sum_probs=59.9

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~  133 (452)
                      |+|.+|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus      1141 G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712      1141 GNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred             EEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence            9999999999999999999999999999999999999999999999999999999999874

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=99.02  E-value=6.9e-10  Score=120.57  Aligned_cols=57  Identities=28%  Similarity=0.524  Sum_probs=56.0

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeE
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAI  129 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l  129 (452)
                      |+|++|+|++||+|++||+|++||+|||+++|.||.+|+|.++++++|+.|.+|++|
T Consensus       526 G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l  582 (582)
T TIGR01108       526 GSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL  582 (582)
T ss_pred             EEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999975

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=98.99  E-value=1.2e-09  Score=126.47  Aligned_cols=61  Identities=26%  Similarity=0.438  Sum_probs=59.8

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~  133 (452)
                      |+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus      1083 G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235      1083 GVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred             cEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence            9999999999999999999999999999999999999999999999999999999999873

This enzyme plays a role in gluconeogensis but not glycolysis.

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=98.98  E-value=1.7e-09  Score=117.67  Aligned_cols=60  Identities=27%  Similarity=0.527  Sum_probs=59.3

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL  132 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i  132 (452)
                      |+|++|+|++||.|++||+|++||+|||+.+|.||.+|+|.++++++|+.|..|++|+.|
T Consensus       533 G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I  592 (593)
T PRK14040        533 GNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTL  592 (593)
T ss_pred             EEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEe
Confidence            999999999999999999999999999999999999999999999999999999999987

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=98.88  E-value=3.2e-09  Score=111.70  Aligned_cols=61  Identities=31%  Similarity=0.495  Sum_probs=60.0

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~  133 (452)
                      |+|+.+.|++|+.|.+||+|+++|.|||+..|+||.+|+|+++.+.+|+.|..|++|++++
T Consensus       584 G~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~  644 (645)
T COG4770         584 GTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE  644 (645)
T ss_pred             ceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEec
Confidence            9999999999999999999999999999999999999999999999999999999999985

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=98.86  E-value=6e-09  Score=113.59  Aligned_cols=62  Identities=27%  Similarity=0.468  Sum_probs=60.3

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955           72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (452)
Q Consensus        72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~  133 (452)
                      .|+|++|+|++||+|++||+|++||+||++++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus       530 ~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~  591 (592)
T PRK09282        530 PGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE  591 (592)
T ss_pred             cEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence            39999999999999999999999999999999999999999999999999999999999985

>PRK12999 pyruvate carboxylase; Reviewed

Probab=98.81  E-value=1.4e-08  Score=118.15  Aligned_cols=61  Identities=25%  Similarity=0.467  Sum_probs=60.0

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~  133 (452)
                      |+|++|+|++||.|++||+|+++|+|||+.+|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus      1085 G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999       1085 GSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred             EEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEc
Confidence            9999999999999999999999999999999999999999999999999999999999985

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=98.78  E-value=7.4e-09  Score=112.17  Aligned_cols=79  Identities=23%  Similarity=0.381  Sum_probs=70.1

Q ss_pred             cccceeeecceeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCC
Q 012955           47 SRRRIFIVQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVG  126 (452)
Q Consensus        47 ~~~~~~~~~~~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G  126 (452)
                      .+++....+..++--.||        |.|+++.|+.||+|++||+|+.+|.|||+..|.||.+|+|.+++|..||.|..|
T Consensus      1070 ~r~KAd~~Np~higApmp--------G~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~g 1141 (1149)
T COG1038        1070 ARRKADPGNPGHIGAPMP--------GVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGG 1141 (1149)
T ss_pred             cccccCCCCccccCCCCC--------CceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccC
Confidence            344445555666666677        999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEe
Q 012955          127 AAIGILA  133 (452)
Q Consensus       127 ~~l~~i~  133 (452)
                      ++|.+++
T Consensus      1142 DLLi~~~ 1148 (1149)
T COG1038        1142 DLLVVVE 1148 (1149)
T ss_pred             ceEEEcc
Confidence            9999875

>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]

Probab=98.60  E-value=6.1e-08  Score=103.36  Aligned_cols=81  Identities=21%  Similarity=0.224  Sum_probs=70.4

Q ss_pred             cccccceeeecceeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccC
Q 012955           45 SRSRRRIFIVQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAP  124 (452)
Q Consensus        45 ~~~~~~~~~~~~~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~  124 (452)
                      ...|++.++.....+--.||        |+|+++.|++|++|++||+||++..|||++-|.||.+|+|+++++..|+.+.
T Consensus      1095 ~v~~PkA~~~~~g~igAPMp--------G~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~ 1166 (1176)
T KOG0369|consen 1095 IVTRPKADPGVKGHIGAPMP--------GTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVE 1166 (1176)
T ss_pred             hcccccCCCCCcccccCCCC--------CceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCccc
Confidence            34455555555554455566        9999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEe
Q 012955          125 VGAAIGILA  133 (452)
Q Consensus       125 ~G~~l~~i~  133 (452)
                      .|++|++++
T Consensus      1167 g~DL~~~~E 1175 (1176)
T KOG0369|consen 1167 GGDLIVELE 1175 (1176)
T ss_pred             ccceEEEcc
Confidence            999999885

>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2

Probab=98.49  E-value=1.4e-05  Score=76.28  Aligned_cols=164  Identities=15%  Similarity=0.140  Sum_probs=114.4

Q ss_pred             hhhcCCccEEEEEEEEechHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCCcCcceeeCCCeEEEcCCccEEEEEec-CC
Q 012955          274 MIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAI-NG  352 (452)
Q Consensus       274 m~~S~~iP~~~~~~eid~~~l~~lr~~~~~~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~~i~~~~~vnIgvAV~~-~~  352 (452)
                      .-....-|.|.++.+||+|+|.+..+   ++|+++...++.++.+|+.++|+|+-++.+++++++++.++.+.+|-. ++
T Consensus        19 ~f~~~~~p~~svT~~lDvT~l~~~~K---~~~~~Ff~~~ly~i~ka~N~~~efR~ri~~~g~v~~~d~i~ps~Tv~~~~~   95 (206)
T PF00302_consen   19 FFRNFDNPYFSVTVNLDVTNLYKYAK---EKGLSFFPAYLYAIMKAANEIPEFRYRIVDDGEVVYYDRIDPSYTVFHKDD   95 (206)
T ss_dssp             HHTTTSBEEEEEEEEEE-HHHHHHHH---HTT--HHHHHHHHHHHHHTTSGGGCEEEETTSCEEEESS-EEEEEEEETTT
T ss_pred             HHhcCCCceEecceeEEhHHHHHHHH---HcCCCcHHHHHHHHHHHHhcCHHHheeeeCCCcEEEECCcceeeeEEeCCC
Confidence            33446689999999999999876544   458999999999999999999999999987668999999999999986 45


Q ss_pred             CeEeeeecCCCCCCHHHHHHHHHHHHHHHHcC-CCCcCc-cCCCcEEEecCCCCCCCCeE-eecCCCc--eEEEEecCce
Q 012955          353 GLITPVLQDADKLDLYLLSQKWKELVEKARSK-QLQPHE-YNSGTFTLSNLGMFGVDRFD-AILPPGQ--GAIMAVGASK  427 (452)
Q Consensus       353 GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g-~l~~~d-~~ggTftISNlG~~Gv~~f~-pii~ppq--~aiL~vG~i~  427 (452)
                      +...-+.-. -.-++.++.+...+.++++++. .+.++. .....|-+|++=-+.=++++ ++-+.+.  .-++..|...
T Consensus        96 ~tFs~~~~~-y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~S~lPW~~FTs~~~~~~~~~~~~~P~it~GK~~  174 (206)
T PF00302_consen   96 ETFSFCWTE-YDEDFEEFYANYEADIERYKESKGLFPKPNDPDNLIYISCLPWVSFTSFSHPVPNGKDDSIPRITWGKYF  174 (206)
T ss_dssp             TEEEEEEE----SSHHHHHHHHHHHHHHHTTS-SSSTTCCHHSSEEEEEEETTS--SEEEEEESSTTT-SS-EEEEE--E
T ss_pred             CeEEEEEec-CCCCHHHHHHHHHHHHHHHhccccccCCCCCCcCEEEEecccceecccccccccCCCcccccEEEeeeeE
Confidence            655433222 3458999999999999998663 455443 45568999988766655554 4443332  3578888776


Q ss_pred             eEEEEcCCCcEEEEeEEEEEEEe
Q 012955          428 PTVVADADGFFGVKSKMLVSLIS  450 (452)
Q Consensus       428 ~~~v~~~dg~i~~~~~m~ltlt~  450 (452)
                      ++     +|    |-+|+|++.+
T Consensus       175 ~~-----~g----r~~mPvsiqv  188 (206)
T PF00302_consen  175 EE-----NG----RLLMPVSIQV  188 (206)
T ss_dssp             EE-----TT----EEEEEEEEEE
T ss_pred             eE-----CC----EEEEEEEEEE
Confidence            52     34    5678888865

3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....

>cd06848 GCS_H Glycine cleavage H-protein

Probab=98.24  E-value=2.3e-06  Score=71.80  Aligned_cols=65  Identities=22%  Similarity=0.204  Sum_probs=50.3

Q ss_pred             eeEEEEcCCCCCCCceEEEEE-EEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCc
Q 012955           57 KIREIFMPALSSTMTEGKIVS-WIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGES  122 (452)
Q Consensus        57 ~~~~i~~P~l~~~~~eg~I~~-w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~  122 (452)
                      ....|-|-+.+..+ -|+|.. |++++||.|++||.|++||++|+..+|.||.+|+|.++..+.++.
T Consensus        14 ~~~~lGlt~~~~~~-lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~   79 (96)
T cd06848          14 GIATVGITDYAQDL-LGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN   79 (96)
T ss_pred             cEEEEeeCHHHHhh-CCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence            34455554444332 477777 667779999999999999999999999999999999887665543

Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.

>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=98.18  E-value=1.4e-06  Score=91.05  Aligned_cols=61  Identities=21%  Similarity=0.313  Sum_probs=59.2

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~  133 (452)
                      |.|.+++|+.||.|++||.|++++.|||+.-+++|.+|++..+.++.|+.|..|.+|.+++
T Consensus       610 G~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~  670 (670)
T KOG0238|consen  610 GIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE  670 (670)
T ss_pred             CeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence            8999999999999999999999999999999999999999999999999999999999873

>PRK13757 chloramphenicol acetyltransferase; Provisional

Probab=98.11  E-value=0.00039  Score=67.06  Aligned_cols=169  Identities=12%  Similarity=0.092  Sum_probs=113.9

Q ss_pred             hHHHHHHhhhcCCccEEEEEEEEechHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCCcCcceeeCCCeEEEcCCccEEE
Q 012955          267 QAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAV  346 (452)
Q Consensus       267 rk~ia~~m~~S~~iP~~~~~~eid~~~l~~lr~~~~~~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~~i~~~~~vnIgv  346 (452)
                      ||.--..-.....-| |.++.+||+++|.+.   +|++|+++...++.|+.+|+-++|+|+-++.+ +.++.++.+|.+.
T Consensus        18 RkehF~~f~~~~~~~-fsiT~~iDiT~l~~~---~K~~~~~fy~~~ly~v~kavN~~~eFR~r~~~-~~v~~~D~i~ps~   92 (219)
T PRK13757         18 RKEHFEAFQSVAQCT-YNQTVQLDITAFLKT---VKKNKHKFYPAFIHILARLMNAHPEFRMAMKD-GELVIWDSVHPCY   92 (219)
T ss_pred             cHHHHHHHhcCCCCc-eEEEEEEEHHHHHHH---HHHcCCChHHHHHHHHHHHHhcCHhHheEEEC-CeEEEEeEEeeeE
Confidence            444444443333333 999999999998754   44558999999999999999999999999964 5788899999999


Q ss_pred             EEecCC-CeEeeeecCCCCCCHHHHHHHHHHHHHHHHcC-CCCcCccCCCcEEEecCCCCCCCCeE-eecCCC--ceEEE
Q 012955          347 AVAING-GLITPVLQDADKLDLYLLSQKWKELVEKARSK-QLQPHEYNSGTFTLSNLGMFGVDRFD-AILPPG--QGAIM  421 (452)
Q Consensus       347 AV~~~~-GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g-~l~~~d~~ggTftISNlG~~Gv~~f~-pii~pp--q~aiL  421 (452)
                      +|-..+ ++..- +.-.-.-++.++.+.....++++++. .+-+.......|-||.+=-+.=+.|+ ++-+..  ..-++
T Consensus        93 Ti~~~~~~tFs~-~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~n~~~iS~iPW~sFTs~~~~~~~~~~~~~P~i  171 (219)
T PRK13757         93 TVFHEQTETFSS-LWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVF  171 (219)
T ss_pred             EEEeCCCceEEE-EEecCcCCHHHHHHHHHHHHHHHhcCccccCCCCCCCeEEeecccCcCccccccccccCCCCcCcEE
Confidence            999655 44442 22223456788888888778888775 45444455668877766543333322 232222  12367


Q ss_pred             EecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955          422 AVGASKPTVVADADGFFGVKSKMLVSLIS  450 (452)
Q Consensus       422 ~vG~i~~~~v~~~dg~i~~~~~m~ltlt~  450 (452)
                      ..|...++     +|    |-+|+|++.+
T Consensus       172 t~GKy~~~-----~g----r~~mPvSvqv  191 (219)
T PRK13757        172 TMGKYYTQ-----GD----KVLMPLAIQV  191 (219)
T ss_pred             EeeceEEE-----CC----EEEEEEEEEE
Confidence            77766531     34    5678888875

>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial

Probab=97.93  E-value=2.2e-05  Score=67.68  Aligned_cols=47  Identities=26%  Similarity=0.359  Sum_probs=39.1

Q ss_pred             EEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCC
Q 012955           73 GKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE  119 (452)
Q Consensus        73 g~I~~w~v-~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~  119 (452)
                      |.|+.+.. ++|+.|++||++++||++|+..+|.||.+|+|.++.-+.
T Consensus        30 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l   77 (110)
T TIGR03077        30 GNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIAL   77 (110)
T ss_pred             CCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHh
Confidence            34444433 679999999999999999999999999999999985433

The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.

>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]

Probab=97.93  E-value=1.4e-05  Score=91.57  Aligned_cols=65  Identities=18%  Similarity=0.387  Sum_probs=60.9

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955           71 TEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus        71 ~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      .-|++++|+|+.|+.|..||+-+|||.|||.|.+-++.+|+| +...++|+.+..|++|+.+..++
T Consensus       692 s~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~i~aG~vlakL~lDd  756 (2196)
T KOG0368|consen  692 SPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDAIEAGSVLAKLTLDD  756 (2196)
T ss_pred             CCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCccCccceeEEeecCC
Confidence            469999999999999999999999999999999999999999 67899999999999999997543

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=97.86  E-value=5.5e-05  Score=79.47  Aligned_cols=64  Identities=16%  Similarity=0.265  Sum_probs=57.1

Q ss_pred             EEEEEEE-cCCCCeecCCCeEEEEEeC------------------------------------------------ceeeE
Q 012955           73 GKIVSWI-KSEGDVLSKGESVVVVESD------------------------------------------------KADMD  103 (452)
Q Consensus        73 g~I~~w~-v~~Gd~V~~gd~l~~vetd------------------------------------------------K~~~e  103 (452)
                      |.|.+++ +++||.|++||+|+++++.                                                ...+.
T Consensus       132 G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~~~  211 (409)
T PRK09783        132 GFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTRFT  211 (409)
T ss_pred             EEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCcEE
Confidence            9999998 9999999999999999831                                                01457


Q ss_pred             EEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955          104 VETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus       104 v~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      |+||++|+|.+..+++|+.|..|++|+.|.+.+
T Consensus       212 I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d~~  244 (409)
T PRK09783        212 LKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMD  244 (409)
T ss_pred             EECCCCeEEEEEECCCCCEECCCCeEEEEEcCC
Confidence            999999999999999999999999999997654

>PRK00624 glycine cleavage system protein H; Provisional

Probab=97.81  E-value=4.7e-05  Score=65.99  Aligned_cols=44  Identities=27%  Similarity=0.387  Sum_probs=37.8

Q ss_pred             EEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEE
Q 012955           73 GKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV  116 (452)
Q Consensus        73 g~I~~w~v-~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~  116 (452)
                      |.|+.+.. ++|+.|++||.|++||++|+..+|.||.+|+|.++.
T Consensus        32 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN   76 (114)
T PRK00624         32 GNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVN   76 (114)
T ss_pred             CCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEH
Confidence            34444443 669999999999999999999999999999999884

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=97.80  E-value=7.3e-05  Score=75.80  Aligned_cols=35  Identities=20%  Similarity=0.305  Sum_probs=32.2

Q ss_pred             eEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955          102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus       102 ~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      ..|+||.+|+|..+.+++|+.|..|++|+.|.+.+
T Consensus       205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~  239 (334)
T TIGR00998       205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVPAE  239 (334)
T ss_pred             cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEcCC
Confidence            47999999999999999999999999999997654

>PRK13380 glycine cleavage system protein H; Provisional

Probab=97.76  E-value=5.1e-05  Score=68.47  Aligned_cols=62  Identities=19%  Similarity=0.153  Sum_probs=49.1

Q ss_pred             eEEEEcCCCCCCCceEEEEEEEcC-CCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCC
Q 012955           58 IREIFMPALSSTMTEGKIVSWIKS-EGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEG  120 (452)
Q Consensus        58 ~~~i~~P~l~~~~~eg~I~~w~v~-~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G  120 (452)
                      ...|-|-++... .-|.|+.+.+. +|++|++||.++.||++|+..+|.||.+|+|.++..+..
T Consensus        30 ~~~vGitd~aq~-~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~   92 (144)
T PRK13380         30 TVTVGITDYAQT-MAGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALE   92 (144)
T ss_pred             EEEEecCHHHHH-hcCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhh
Confidence            345544444322 23678888876 899999999999999999999999999999999875543

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=97.75  E-value=6.5e-05  Score=76.07  Aligned_cols=63  Identities=17%  Similarity=0.264  Sum_probs=56.4

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCc-----------------------------------------------------
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVESDK-----------------------------------------------------   99 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vetdK-----------------------------------------------------   99 (452)
                      |+|.+++|++||.|++||+|++++...                                                     
T Consensus        56 G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~a~  135 (310)
T PRK10559         56 GLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQTVL  135 (310)
T ss_pred             eEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999998721                                                     


Q ss_pred             -----------------eeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955          100 -----------------ADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus       100 -----------------~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                                       -...|+||++|+|.++.+++|+.|..|++|+.|.+.
T Consensus       136 a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv~~  188 (310)
T PRK10559        136 HQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQ  188 (310)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEEeC
Confidence                             024699999999999999999999999999988654

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=97.75  E-value=7.8e-05  Score=74.62  Aligned_cols=65  Identities=20%  Similarity=0.403  Sum_probs=57.2

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCce---------------------------------------------------
Q 012955           72 EGKIVSWIKSEGDVLSKGESVVVVESDKA---------------------------------------------------  100 (452)
Q Consensus        72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~---------------------------------------------------  100 (452)
                      .|+|.++++++||.|++||+|+.++..-.                                                   
T Consensus        34 ~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~  113 (322)
T TIGR01730        34 AGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVEA  113 (322)
T ss_pred             cEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHH
Confidence            49999999999999999999999975311                                                   


Q ss_pred             --------------------eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955          101 --------------------DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus       101 --------------------~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                                          ...|+||.+|+|..+.+.+|+.+..|++|+.|.+.+
T Consensus       114 ~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~  169 (322)
T TIGR01730       114 AQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDLD  169 (322)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcCC
Confidence                                346999999999999999999999999999997543

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=97.69  E-value=9.7e-05  Score=75.66  Aligned_cols=36  Identities=31%  Similarity=0.356  Sum_probs=32.4

Q ss_pred             eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus       101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      ...|+||++|+|.++.+++|+.|..|++|+.|.+.+
T Consensus       208 ~~~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~~~  243 (346)
T PRK10476        208 DTTVRAPFDGRVVGLKVSVGEFAAPMQPIFTLIDTD  243 (346)
T ss_pred             cCEEECCCCcEEEeeecCCCCCcCCCCeEEEEecCC
Confidence            346999999999999999999999999999997654

>PRK01202 glycine cleavage system protein H; Provisional

Probab=97.65  E-value=0.00017  Score=63.80  Aligned_cols=64  Identities=27%  Similarity=0.258  Sum_probs=50.0

Q ss_pred             EEEEEEE-cCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEE---EeCCCCccC---CCC-eEEEEecch
Q 012955           73 GKIVSWI-KSEGDVLSKGESVVVVESDKADMDVETFYDGILAAI---VVPEGESAP---VGA-AIGILAETE  136 (452)
Q Consensus        73 g~I~~w~-v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i---~v~~G~~v~---~G~-~l~~i~~~~  136 (452)
                      |.|+.+. .++|++|++||+++.||++|...+|.||.+|+|.++   +....+.+.   .|+ -|+.|...+
T Consensus        37 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~~~  108 (127)
T PRK01202         37 GDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPSD  108 (127)
T ss_pred             CCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEeCC
Confidence            3444433 267999999999999999999999999999999999   444445554   665 888887543

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=97.52  E-value=0.00021  Score=74.62  Aligned_cols=35  Identities=9%  Similarity=0.093  Sum_probs=32.0

Q ss_pred             eEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955          102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus       102 ~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      ..|+||.+|+|..+.+++|+.|..|++|+.|.+.+
T Consensus       216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv~~~  250 (390)
T PRK15136        216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVVPAT  250 (390)
T ss_pred             CEEECCCCeEEEEEecCCCCEeCCCCeEEEEEeCC
Confidence            47999999999999999999999999999987644

>PRK14843 dihydrolipoamide acetyltransferase; Provisional

Probab=97.48  E-value=6.4e-05  Score=77.24  Aligned_cols=43  Identities=37%  Similarity=0.518  Sum_probs=39.6

Q ss_pred             CccccChhHHHHHhhcCCCccccccCCCCcccchhhHHHhhcc
Q 012955          184 RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGI  226 (452)
Q Consensus       184 ~~~~asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV~~~~~~  226 (452)
                      .++++||.+|++|+++|||+..|.|+|++|||+++||++|...
T Consensus         4 ~~~~asPaar~la~e~~idl~~i~gtG~~gri~k~Dv~~~~~~   46 (347)
T PRK14843          4 DKLRATPAARKLADDLGINLYDVSGSGANGRVHKEDVETYKDT   46 (347)
T ss_pred             ccccCChHHHHHHHHcCCCHHHCCCCCCCCceeHHHHhhhccc
Confidence            3567899999999999999999999999999999999999764

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=97.47  E-value=0.00021  Score=72.65  Aligned_cols=35  Identities=23%  Similarity=0.262  Sum_probs=31.9

Q ss_pred             eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus       101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      ...|+||++|+|..+.+++|+.|..|++|+.|.+.
T Consensus       203 ~~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~~  237 (331)
T PRK03598        203 DTELIAPSDGTILTRAVEPGTMLNAGSTVFTLSLT  237 (331)
T ss_pred             cCEEECCCCeEEEeccCCCCCCcCCCCeEEEEecC
Confidence            35799999999999999999999999999999654

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=97.47  E-value=0.00037  Score=72.49  Aligned_cols=64  Identities=16%  Similarity=0.226  Sum_probs=54.9

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCce---------------------------------------------------
Q 012955           72 EGKIVSWIKSEGDVLSKGESVVVVESDKA---------------------------------------------------  100 (452)
Q Consensus        72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~---------------------------------------------------  100 (452)
                      .|+|.++++++||.|++||+|+.++..-.                                                   
T Consensus        71 ~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~~  150 (385)
T PRK09578         71 AGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADERQ  150 (385)
T ss_pred             cEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            39999999999999999999999986310                                                   


Q ss_pred             --------------------eeEEEcCCCeEEEEEEeCCCCccCCC--CeEEEEecc
Q 012955          101 --------------------DMDVETFYDGILAAIVVPEGESAPVG--AAIGILAET  135 (452)
Q Consensus       101 --------------------~~ev~ap~~G~l~~i~v~~G~~v~~G--~~l~~i~~~  135 (452)
                                          ...|+||++|+|.+.++++|+.|..|  ++|+.|.+.
T Consensus       151 a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~~~  207 (385)
T PRK09578        151 AKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQL  207 (385)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEEec
Confidence                                24799999999999999999999885  588888653

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=97.46  E-value=0.00041  Score=72.54  Aligned_cols=63  Identities=21%  Similarity=0.250  Sum_probs=54.1

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCce----------------------------------------------------
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVESDKA----------------------------------------------------  100 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~----------------------------------------------------  100 (452)
                      |+|.++++++||.|++||+|++|+....                                                    
T Consensus        74 G~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~~a  153 (397)
T PRK15030         74 GIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQA  153 (397)
T ss_pred             EEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHH
Confidence            9999999999999999999999975210                                                    


Q ss_pred             -------------------eeEEEcCCCeEEEEEEeCCCCccCCCCe--EEEEecc
Q 012955          101 -------------------DMDVETFYDGILAAIVVPEGESAPVGAA--IGILAET  135 (452)
Q Consensus       101 -------------------~~ev~ap~~G~l~~i~v~~G~~v~~G~~--l~~i~~~  135 (452)
                                         ...|+||++|+|.+.++++|+.|..|++  |+.|.+.
T Consensus       154 ~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~  209 (397)
T PRK15030        154 NAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQL  209 (397)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEEEec
Confidence                               2469999999999999999999999985  6666543

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=97.37  E-value=0.00065  Score=70.69  Aligned_cols=63  Identities=17%  Similarity=0.248  Sum_probs=54.6

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCc-----------------------------------------------------
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVESDK-----------------------------------------------------   99 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vetdK-----------------------------------------------------   99 (452)
                      |+|.++++++||.|++||+|++++...                                                     
T Consensus        70 G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~~a  149 (385)
T PRK09859         70 GIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNEA  149 (385)
T ss_pred             EEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHH
Confidence            999999999999999999999998531                                                     


Q ss_pred             ------------------eeeEEEcCCCeEEEEEEeCCCCccCCCC--eEEEEecc
Q 012955          100 ------------------ADMDVETFYDGILAAIVVPEGESAPVGA--AIGILAET  135 (452)
Q Consensus       100 ------------------~~~ev~ap~~G~l~~i~v~~G~~v~~G~--~l~~i~~~  135 (452)
                                        ....|+||++|+|.+.++++|+.|..|+  +|+.|.+.
T Consensus       150 ~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~  205 (385)
T PRK09859        150 EANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRL  205 (385)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEEec
Confidence                              0257999999999999999999999985  68877543

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=97.30  E-value=0.00076  Score=49.73  Aligned_cols=38  Identities=16%  Similarity=0.348  Sum_probs=33.1

Q ss_pred             eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchhh
Q 012955          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAE  138 (452)
Q Consensus       101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~~  138 (452)
                      +..|.+|.+|+|.++++++|+.|+.|++|+.+...+.+
T Consensus         2 ~~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~~~~   39 (50)
T PF13533_consen    2 TVTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSPDLQ   39 (50)
T ss_pred             eEEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcHHHH
Confidence            36789999999999999999999999999999765543

>TIGR00527 gcvH glycine cleavage system H protein

Probab=97.28  E-value=0.00041  Score=61.31  Aligned_cols=47  Identities=32%  Similarity=0.251  Sum_probs=39.3

Q ss_pred             EEEEEEE-cCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCC
Q 012955           73 GKIVSWI-KSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE  119 (452)
Q Consensus        73 g~I~~w~-v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~  119 (452)
                      |.|..+. .++|++|++||.++.||++|+..+|.||.+|+|.++.-..
T Consensus        36 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l   83 (127)
T TIGR00527        36 GDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDAL   83 (127)
T ss_pred             CCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhh
Confidence            4454443 3679999999999999999999999999999999886443

The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.

>PRK12784 hypothetical protein; Provisional

Probab=97.21  E-value=0.0017  Score=51.74  Aligned_cols=65  Identities=15%  Similarity=0.183  Sum_probs=58.6

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCce-eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955           71 TEGKIVSWIKSEGDVLSKGESVVVVESDKA-DMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus        71 ~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~-~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      -.|+|.++++.+++.|-+.+.|+-|+++.- -..|.--.+|.|..+.+++||.+..+++|+.++++
T Consensus        12 ~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~edD   77 (84)
T PRK12784         12 YEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLEDD   77 (84)
T ss_pred             cccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEeec
Confidence            369999999999999999999999999754 44588899999999999999999999999999763

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=97.20  E-value=0.0011  Score=69.86  Aligned_cols=63  Identities=14%  Similarity=0.283  Sum_probs=53.5

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCc----------------------------------------------------
Q 012955           72 EGKIVSWIKSEGDVLSKGESVVVVESDK----------------------------------------------------   99 (452)
Q Consensus        72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK----------------------------------------------------   99 (452)
                      .|+|.++++++||.|++||+|+++....                                                    
T Consensus        95 sG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~~  174 (415)
T PRK11556         95 DGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVSE  174 (415)
T ss_pred             cEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Confidence            3999999999999999999999996521                                                    


Q ss_pred             -------------------eeeEEEcCCCeEEEEEEeCCCCccCCCC--eEEEEec
Q 012955          100 -------------------ADMDVETFYDGILAAIVVPEGESAPVGA--AIGILAE  134 (452)
Q Consensus       100 -------------------~~~ev~ap~~G~l~~i~v~~G~~v~~G~--~l~~i~~  134 (452)
                                         -...|+||++|+|..+.++.|+.|..|+  +|+.|.+
T Consensus       175 a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~~  230 (415)
T PRK11556        175 TEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVITQ  230 (415)
T ss_pred             HHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEec
Confidence                               0237999999999999999999999984  6777654

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=97.15  E-value=0.0016  Score=67.42  Aligned_cols=63  Identities=17%  Similarity=0.266  Sum_probs=53.7

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCc-----------------------------------------------------
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVESDK-----------------------------------------------------   99 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vetdK-----------------------------------------------------   99 (452)
                      |.|.+|++++||.|++||+|++++...                                                     
T Consensus        70 G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~~  149 (370)
T PRK11578         70 GQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLDTA  149 (370)
T ss_pred             eEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            999999999999999999999998631                                                     


Q ss_pred             --------------------------------eeeEEEcCCCeEEEEEEeCCCCccCCC---CeEEEEecc
Q 012955          100 --------------------------------ADMDVETFYDGILAAIVVPEGESAPVG---AAIGILAET  135 (452)
Q Consensus       100 --------------------------------~~~ev~ap~~G~l~~i~v~~G~~v~~G---~~l~~i~~~  135 (452)
                                                      ....|+||++|+|..+.++.|+.|..|   ++|+.|.+.
T Consensus       150 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~AP~dG~V~~~~~~~G~~V~~~~~~~~l~~i~~~  220 (370)
T PRK11578        150 ATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADM  220 (370)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCcEEEeeecCCCcEeecccCCceEEEEecC
Confidence                                            023799999999999999999999765   478887554

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=97.15  E-value=0.00046  Score=50.90  Aligned_cols=28  Identities=29%  Similarity=0.531  Sum_probs=25.7

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 012955           72 EGKIVSWIKSEGDVLSKGESVVVVESDK   99 (452)
Q Consensus        72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK   99 (452)
                      .|+|.+|+|++||.|++||+|+++++..
T Consensus        10 ~G~V~~v~V~~G~~VkkGd~L~~ld~~~   37 (50)
T PF13533_consen   10 SGRVESVYVKEGQQVKKGDVLLVLDSPD   37 (50)
T ss_pred             CEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence            3999999999999999999999998754

>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C

Probab=96.98  E-value=0.00099  Score=66.82  Aligned_cols=64  Identities=23%  Similarity=0.464  Sum_probs=47.7

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCce---------------------------------------------------
Q 012955           72 EGKIVSWIKSEGDVLSKGESVVVVESDKA---------------------------------------------------  100 (452)
Q Consensus        72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~---------------------------------------------------  100 (452)
                      .|+| +|+|++||+|++||+|++++++..                                                   
T Consensus        29 ~G~v-~~~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  107 (328)
T PF12700_consen   29 SGRV-SVNVKEGDKVKKGQVLAELDSSDLQAQLEQAQAELEQAEAQLEQAQAEQEQQIKQAISQLSYERAKKLYSQIAIS  107 (328)
T ss_dssp             -EEE-EE-S-TTSEEETT-EEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHCHHTCSSTSS
T ss_pred             CEEE-EEEeCCcCEECCCCEEEEEEChhhhhhhhhhHHHHHHHHHhHHHHhhhhHHHHHHHHHHhHHHHHHhhhhhhhhH
Confidence            3999 999999999999999999987221                                                   


Q ss_pred             ----------------ee----------EEEcCCCeEEE-------------------------EEEeCCCCccCCCCeE
Q 012955          101 ----------------DM----------DVETFYDGILA-------------------------AIVVPEGESAPVGAAI  129 (452)
Q Consensus       101 ----------------~~----------ev~ap~~G~l~-------------------------~i~v~~G~~v~~G~~l  129 (452)
                                      .+          .|.||++|+|.                         ++.+.+|+.+..|++|
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ap~~G~V~~~~d~~e~~~~~~i~~~~~~~~~~~~~~~~~g~~v~~g~~l  187 (328)
T PF12700_consen  108 KEELDQAKANYEQAQAQLNKAQLQSQLAQIKAPFDGVVSYSIDGYENLNEDSIDPEDIDQANYSKINVNPGQYVAAGQPL  187 (328)
T ss_dssp             TCCHHHHHCHHHHHHHHHC-HHHHHHHHHEE-SSSEEEE------------EES----------E-TT-TT-EETSTTCS
T ss_pred             HHHHHHHHhHHHHHHhhhccccccccccccccchhhhccccccccccccccccccccccccccceeccCCCCEECCCcee
Confidence                            11          39999999999                         9999999999999999


Q ss_pred             EEEecch
Q 012955          130 GILAETE  136 (452)
Q Consensus       130 ~~i~~~~  136 (452)
                      +.|.+..
T Consensus       188 ~~i~~~~  194 (328)
T PF12700_consen  188 FTIADLS  194 (328)
T ss_dssp             EEEEEES
T ss_pred             eeeccCC
Confidence            9997653

...

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=96.91  E-value=0.0021  Score=65.06  Aligned_cols=33  Identities=27%  Similarity=0.241  Sum_probs=28.5

Q ss_pred             EEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955          103 DVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus       103 ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      .|+||++|+|..+.+.+|+.|.. ++|+.|.+.+
T Consensus       206 ~i~AP~dG~V~~~~~~~G~~v~~-~~l~~i~~~~  238 (327)
T TIGR02971       206 YVKAPIDGRVLKIHAREGEVIGS-EGILEMGDTS  238 (327)
T ss_pred             EEECCCCeEEEEEecCCCCccCC-CccEEEecCC
Confidence            68999999999999999999986 7888886543

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes

Probab=96.88  E-value=0.0025  Score=55.95  Aligned_cols=44  Identities=30%  Similarity=0.342  Sum_probs=33.6

Q ss_pred             EEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEE
Q 012955           73 GKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV  116 (452)
Q Consensus        73 g~I~~w~v-~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~  116 (452)
                      |.|+.+.. ++|++|++||+++.||+.|...++.||.+|+|.++.
T Consensus        31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN   75 (122)
T PF01597_consen   31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVN   75 (122)
T ss_dssp             -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-
T ss_pred             CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEc
Confidence            44444433 569999999999999999999999999999998875

GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....

>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]

Probab=96.84  E-value=0.008  Score=56.68  Aligned_cols=105  Identities=14%  Similarity=0.162  Sum_probs=87.1

Q ss_pred             hcCCccEEEEEEEEechHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCCcCcceeeCCCeEEEcCCccEEEEEecCC-Ce
Q 012955          276 ESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAING-GL  354 (452)
Q Consensus       276 ~S~~iP~~~~~~eid~~~l~~lr~~~~~~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~~i~~~~~vnIgvAV~~~~-GL  354 (452)
                      ++...||+.+...+|++.+...   +|+.+++++.+++.|+.+++.+|++|+=++.+ +...+++.++..+.|..++ ++
T Consensus        24 R~~~~p~y~i~~~LDvtn~~~~---vk~~~l~Ff~a~l~avtr~~n~~~EFRlr~~~-~~~~~~d~v~p~~tv~~~~~e~   99 (219)
T COG4845          24 RLLQYPHYDINLQLDVTNFYGY---VKENGLSFFPALLYAVTRCANRHQEFRLRIQN-GQLGYWDNVPPMYTVFHGETET   99 (219)
T ss_pred             hhcccceEeeeeeeehhHHHHH---HHHcCCcchHHHHHHHHHHhcccHHhHhhhcC-CeeEEeecCCcceEEEcCCCcE
Confidence            5578999999999999876544   45559999999999999999999999999875 4788999999999999954 56


Q ss_pred             EeeeecCCCCCCHHHHHHHHHHHHHHHHcCC
Q 012955          355 ITPVLQDADKLDLYLLSQKWKELVEKARSKQ  385 (452)
Q Consensus       355 ~vPVI~~a~~~sl~eia~~i~~l~~kar~g~  385 (452)
                      +.-+.-+ -+.+..++.+....-+++.+.+.
T Consensus       100 Fs~l~~e-~~~~~~dF~q~y~~~ie~~~~~~  129 (219)
T COG4845         100 FSVLWTE-YQEDYEDFAQLYIEDIEQYGANN  129 (219)
T ss_pred             EEEEecc-ccccHHHHHHHHHHHHHHhccCc
Confidence            6644444 67788999988888888887765

>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family

Probab=96.74  E-value=0.0051  Score=60.28  Aligned_cols=68  Identities=26%  Similarity=0.393  Sum_probs=55.2

Q ss_pred             eeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955           57 KIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus        57 ~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      .-+-|.-|      ..|.+ +..++.||.|++||+|+.|+.    .+|.||.+|+|. =++.+|-.|+.|.-|+.|..-.
T Consensus       163 ~Er~IrAp------~~Gi~-~~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVr-GlirdG~~V~~G~Ki~dIDPR~  230 (256)
T TIGR03309       163 HERVLRAP------ADGIV-TPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLR-GLIHEGLTVTEGLKIGDVDPRG  230 (256)
T ss_pred             ceEEEECC------CCeEE-eeccCCCCEEeCCCEEEEEcC----EEEEccCCeEEE-EEecCCCCcCCCCEEEEECCCC
Confidence            34555555      22544 459999999999999999974    799999999995 5789999999999999997544

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.

>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=96.32  E-value=0.0048  Score=54.48  Aligned_cols=44  Identities=36%  Similarity=0.393  Sum_probs=37.6

Q ss_pred             EEEEEE-EcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEE
Q 012955           73 GKIVSW-IKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV  116 (452)
Q Consensus        73 g~I~~w-~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~  116 (452)
                      |.|+-+ +.++|++|++|+.++.||+-|+..+|.||.+|.|.++.
T Consensus        39 Gdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN   83 (131)
T COG0509          39 GDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVN   83 (131)
T ss_pred             CCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEec
Confidence            444444 23789999999999999999999999999999998775

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=96.22  E-value=0.0075  Score=47.52  Aligned_cols=34  Identities=24%  Similarity=0.324  Sum_probs=31.2

Q ss_pred             EEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955          103 DVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus       103 ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      .|+||+.|+|.++++++||.|..|++|+.++...
T Consensus         4 ~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K   37 (71)
T PRK05889          4 DVRAEIVASVLEVVVNEGDQIGKGDTLVLLESMK   37 (71)
T ss_pred             EEeCCCCEEEEEEEeCCCCEECCCCEEEEEEecc
Confidence            5999999999999999999999999999997544

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=96.19  E-value=0.02  Score=59.53  Aligned_cols=34  Identities=15%  Similarity=0.239  Sum_probs=29.9

Q ss_pred             eEEEcCCCeEEEEEEe-CCCCccCCCCeEEEEecc
Q 012955          102 MDVETFYDGILAAIVV-PEGESAPVGAAIGILAET  135 (452)
Q Consensus       102 ~ev~ap~~G~l~~i~v-~~G~~v~~G~~l~~i~~~  135 (452)
                      ..|+||++|+|..+.+ .+|+.|..|++|+.|.+.
T Consensus       272 ~~i~AP~dG~V~~~~~~~~G~~v~~g~~l~~i~~~  306 (423)
T TIGR01843       272 LIIRSPVDGTVQSLKVHTVGGVVQPGETLMEIVPE  306 (423)
T ss_pred             cEEECCCCcEEEEEEEEccCceecCCCeeEEEecC
Confidence            3599999999999876 799999999999999753

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters)

Probab=96.13  E-value=0.012  Score=57.33  Aligned_cols=35  Identities=20%  Similarity=0.284  Sum_probs=31.5

Q ss_pred             eEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955          102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus       102 ~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      +.|+||++|+|..+.+.+|+.+..|++|+.|.+..
T Consensus        89 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~~  123 (265)
T TIGR00999        89 VEVRSPFDGYITQKSVTLGDYVAPQAELFRVADLG  123 (265)
T ss_pred             EEEECCCCeEEEEEEcCCCCEeCCCCceEEEEcCC
Confidence            35899999999999999999999999999987643

>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]

Probab=96.11  E-value=0.014  Score=60.16  Aligned_cols=36  Identities=17%  Similarity=0.266  Sum_probs=32.2

Q ss_pred             eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus       101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      ...|+||.+|+|.+..+..|+.|..|.+|+.+.+.+
T Consensus       208 ~T~IrAP~dG~V~~~~v~~G~~V~~G~~l~alVp~~  243 (352)
T COG1566         208 RTVIRAPVDGYVTNLSVRVGQYVSAGTPLMALVPLD  243 (352)
T ss_pred             CCEEECCCCceEEeecccCCCeecCCCceEEEeccc
Confidence            345899999999999999999999999999987644

>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain

Probab=96.04  E-value=0.01  Score=50.44  Aligned_cols=55  Identities=20%  Similarity=0.287  Sum_probs=44.3

Q ss_pred             eEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEE
Q 012955           58 IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV  116 (452)
Q Consensus        58 ~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~  116 (452)
                      ...+.+| |.  ..-|.-.+-.|++||+|++||.|++.+ +-+...|.|+.+|+|..|.
T Consensus        27 p~~v~ip-L~--qh~G~~~~p~V~~Gd~V~~GQ~Ia~~~-~~~sa~iHAsvSG~V~~I~   81 (101)
T PF13375_consen   27 PKKVVIP-LR--QHIGAPAEPVVKVGDKVKKGQLIAEAE-GFLSAPIHASVSGTVTAIE   81 (101)
T ss_pred             cCEEEEE-Cc--ccCCCcceEEEcCCCEEcCCCEEEecC-CCcEeeEEcCCCeEEEEEe
Confidence            3455666 33  234677889999999999999999997 4668899999999999875

>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=95.85  E-value=0.028  Score=56.69  Aligned_cols=58  Identities=21%  Similarity=0.229  Sum_probs=48.4

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEe---CceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVES---DKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL  132 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vet---dK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i  132 (452)
                      +=+.+.+++.||.|++||+|++|=.   +....+|.||++|+|.  .....-.|..|+.|+.|
T Consensus       237 ~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~--~~~~~p~v~~G~~l~~i  297 (298)
T cd06253         237 SGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILF--TLREYPLVYEGSLVARI  297 (298)
T ss_pred             CeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEE--EeecCCeecCCceEEEe
Confidence            4477888999999999999999964   4567889999999994  45666788999998876

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PRK06748 hypothetical protein; Validated

Probab=95.69  E-value=0.017  Score=47.23  Aligned_cols=32  Identities=13%  Similarity=0.089  Sum_probs=30.6

Q ss_pred             EEEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955          103 DVETFYDGILAAIVVPEGESAPVGAAIGILAE  134 (452)
Q Consensus       103 ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~  134 (452)
                      -|.||..|.|.++++++||.|..|++|++++.
T Consensus         6 ~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IET   37 (83)
T PRK06748          6 GVYSPCYGKVEKLFVRESSYVYEWEKLALIET   37 (83)
T ss_pred             EEecCCcEEEEEEEeCCCCEECCCCEEEEEEc
Confidence            38999999999999999999999999999987

>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=95.55  E-value=0.051  Score=54.48  Aligned_cols=57  Identities=18%  Similarity=0.267  Sum_probs=45.9

Q ss_pred             EEEEEEcCCCCeecCCCeEEEEEe--CceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955           74 KIVSWIKSEGDVLSKGESVVVVES--DKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL  132 (452)
Q Consensus        74 ~I~~w~v~~Gd~V~~gd~l~~vet--dK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i  132 (452)
                      =+.++.++.||.|++||+|++|..  .....+|+||.+|+|.  .....-.|..|+.|+.|
T Consensus       228 G~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~--~~~~~~~v~~G~~l~~i  286 (287)
T cd06251         228 GLLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVI--GRNNLPLVNEGDALFHI  286 (287)
T ss_pred             eEEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEE--EecCCCccCCCCEEEEe
Confidence            356689999999999999999964  1234789999999994  45666678889988876

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases

Probab=95.53  E-value=0.041  Score=57.02  Aligned_cols=59  Identities=15%  Similarity=0.321  Sum_probs=48.2

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955           72 EGKIVSWIKSEGDVLSKGESVVVVES----DKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL  132 (452)
Q Consensus        72 eg~I~~w~v~~Gd~V~~gd~l~~vet----dK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i  132 (452)
                      .|=+.+++++.||.|++||.|++|-.    +....+|.||++|+|  +.....-.|..|+.|+.|
T Consensus       296 ~~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv--~~~~~~~~V~~G~~l~~I  358 (359)
T cd06250         296 AGGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLL--FARASRRFVRAGDELAKI  358 (359)
T ss_pred             CCeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEE--EEecCCccccCCCeEEEe
Confidence            35578899999999999999999964    234555799999999  456777889999999876

This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding

>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=95.52  E-value=0.054  Score=55.10  Aligned_cols=59  Identities=19%  Similarity=0.244  Sum_probs=47.9

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVES----DKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vet----dK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~  133 (452)
                      +=+.+..++.||.|++||+|++|-.    .....+|.||.+|+|.-  ....-.|..|+.|+.|.
T Consensus       252 ~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~--~~~~~~v~~G~~l~~i~  314 (316)
T cd06252         252 PGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAA--RRPPGLVRRGDCLAVLA  314 (316)
T ss_pred             CeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEE--eeCCCccCCCCEEEEEe
Confidence            4578899999999999999999865    34567899999999953  44445688999998874

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>TIGR02994 ectoine_eutE ectoine utilization protein EutE

Probab=95.31  E-value=0.057  Score=55.21  Aligned_cols=58  Identities=26%  Similarity=0.350  Sum_probs=47.6

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVES----DKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL  132 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vet----dK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i  132 (452)
                      +=+.+..++.||.|++||+|++|-.    .....+|.||.+|+|..  ....-.|..|+.|+.|
T Consensus       263 ~Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~--~~~~~~V~~Gd~l~~i  324 (325)
T TIGR02994       263 DGLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAA--RHFPGLIKSGDCIAVL  324 (325)
T ss_pred             CeEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEE--EeCCCccCCCCEEEEe
Confidence            4466789999999999999999964    23567899999999954  5666788999999876

Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=95.10  E-value=0.033  Score=42.23  Aligned_cols=31  Identities=23%  Similarity=0.476  Sum_probs=29.3

Q ss_pred             EEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955          104 VETFYDGILAAIVVPEGESAPVGAAIGILAE  134 (452)
Q Consensus       104 v~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~  134 (452)
                      |.||++|+|.++++++|+.|..|++|+.++.
T Consensus         2 v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~   32 (67)
T cd06850           2 VTAPMPGTVVKVLVKEGDKVEAGQPLAVLEA   32 (67)
T ss_pred             ccCCccEEEEEEEeCCCCEECCCCEEEEEEc
Confidence            6899999999999999999999999999964

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=94.89  E-value=0.051  Score=42.47  Aligned_cols=34  Identities=26%  Similarity=0.311  Sum_probs=31.0

Q ss_pred             EEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955          103 DVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus       103 ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      .|.||..|+|.++++++|+.|..|++|+.++...
T Consensus         3 ~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve~~k   36 (70)
T PRK08225          3 KVYASMAGNVWKIVVKVGDTVEEGQDVVILESMK   36 (70)
T ss_pred             eEeCCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence            5889999999999999999999999999996533

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=94.88  E-value=0.037  Score=49.73  Aligned_cols=34  Identities=18%  Similarity=0.291  Sum_probs=31.9

Q ss_pred             eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAE  134 (452)
Q Consensus       101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~  134 (452)
                      ...|.||..|++.++++++||.|..||.||.|+.
T Consensus        70 ~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEA  103 (140)
T COG0511          70 GTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEA  103 (140)
T ss_pred             CceEecCcceEEEEEeeccCCEEcCCCEEEEEEe
Confidence            4679999999999999999999999999999975

>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=94.46  E-value=0.094  Score=52.58  Aligned_cols=55  Identities=15%  Similarity=0.172  Sum_probs=41.6

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEe--CceeeEEEcCCCeEEEEEEeCCCCccCCCCeE
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVES--DKADMDVETFYDGILAAIVVPEGESAPVGAAI  129 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vet--dK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l  129 (452)
                      +=+.+.+++.||.|++||+|++|-.  .....+|.||++|+|.-+  ...-.|..|+.|
T Consensus       231 ~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~--~~~~~v~~G~~l  287 (288)
T cd06254         231 SGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYN--TATLPVRKGDPL  287 (288)
T ss_pred             CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe--eCCCccCCCCcc
Confidence            4578889999999999999999943  345678999999999544  333455666554

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PF13437 HlyD_3: HlyD family secretion protein

Probab=94.37  E-value=0.055  Score=45.29  Aligned_cols=33  Identities=24%  Similarity=0.531  Sum_probs=27.2

Q ss_pred             EEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955          103 DVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus       103 ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      +|+||++|+|..+.+++|+.+..|++|+.|.+.
T Consensus         1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~   33 (105)
T PF13437_consen    1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDT   33 (105)
T ss_pred             CEECCCCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence            378888888888888888888888888888764

>COG3608 Predicted deacylase [General function prediction only]

Probab=94.25  E-value=0.11  Score=52.99  Aligned_cols=61  Identities=15%  Similarity=0.326  Sum_probs=47.9

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeC---ceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955           72 EGKIVSWIKSEGDVLSKGESVVVVESD---KADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE  134 (452)
Q Consensus        72 eg~I~~w~v~~Gd~V~~gd~l~~vetd---K~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~  134 (452)
                      ++=+++.+|+.||+|++||.|+.|-..   +...||+|+.+|+|..+..  --.+..|+.++.+..
T Consensus       263 ~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~--~~~v~~Gdl~~~v~~  326 (331)
T COG3608         263 AGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRS--LRLVQPGDLLKVVGR  326 (331)
T ss_pred             CCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEee--ccccCCCCeeeeecc
Confidence            355899999999999999999988754   7899999999999976532  234556677766643

>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function

Probab=94.03  E-value=0.075  Score=48.24  Aligned_cols=46  Identities=26%  Similarity=0.441  Sum_probs=35.1

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeE-EEcCCCeEEEEEE
Q 012955           71 TEGKIVSWIKSEGDVLSKGESVVVVESDKADMD-VETFYDGILAAIV  116 (452)
Q Consensus        71 ~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~e-v~ap~~G~l~~i~  116 (452)
                      -+|..+-..+.+||.|.+||.|+-+.|-|-++- ++||++|+|.-+.
T Consensus        87 veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~  133 (150)
T PF09891_consen   87 VEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI  133 (150)
T ss_dssp             EESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred             ecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence            367888899999999999999999999997765 9999999997654

; PDB: 3D4R_D.

>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2

Probab=93.97  E-value=1.1  Score=47.64  Aligned_cols=39  Identities=31%  Similarity=0.405  Sum_probs=35.2

Q ss_pred             EEEEEEechHHHHHHHHhCCCCCCHHHHHHHHHHHHHhh
Q 012955          284 RVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQ  322 (452)
Q Consensus       284 ~~~~eid~~~l~~lr~~~~~~~vs~t~~l~kA~a~AL~~  322 (452)
                      +....++-+.+.++++.-|+.++|+|.+|.-+++.||.+
T Consensus       251 ~~~~~i~~~~~~~ll~~CR~~~~TlT~~L~al~~~al~~  289 (480)
T PF07247_consen  251 YRSLSISPEELKKLLKACRKHGTTLTALLHALIALALSK  289 (480)
T ss_pred             EEEEEECHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            456689999999999999999999999999999999997

3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process

>PRK07051 hypothetical protein; Validated

Probab=93.91  E-value=0.17  Score=40.76  Aligned_cols=26  Identities=19%  Similarity=0.606  Sum_probs=24.3

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEE
Q 012955           71 TEGKIVSWIKSEGDVLSKGESVVVVE   96 (452)
Q Consensus        71 ~eg~I~~w~v~~Gd~V~~gd~l~~ve   96 (452)
                      .+|+|.+|++++||.|+.||+|++++
T Consensus        54 ~~G~v~~i~~~~G~~V~~G~~l~~i~   79 (80)
T PRK07051         54 AAGRVVEFLVEDGEPVEAGQVLARIE   79 (80)
T ss_pred             CCEEEEEEEcCCcCEECCCCEEEEEe
Confidence            45999999999999999999999985

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=93.66  E-value=0.11  Score=46.07  Aligned_cols=35  Identities=14%  Similarity=0.214  Sum_probs=32.4

Q ss_pred             eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus       101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      ...|.||.+|+|.++++++|+.|..|++|+.++..
T Consensus        61 ~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEam   95 (130)
T PRK06549         61 ADAMPSPMPGTILKVLVAVGDQVTENQPLLILEAM   95 (130)
T ss_pred             CcEEECCCCEEEEEEEeCCCCEECCCCEEEEEecc
Confidence            56799999999999999999999999999999753

>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins

Probab=93.61  E-value=0.11  Score=51.30  Aligned_cols=44  Identities=18%  Similarity=0.256  Sum_probs=36.4

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEe
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVV  117 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v  117 (452)
                      |..-+.+|+|||+|++||+|++-. .--.+-+.||.+|+|.+|.-
T Consensus        38 g~~Pkm~VkeGD~Vk~Gq~LF~dK-~~p~v~ftsPvsG~V~~I~R   81 (257)
T PF05896_consen   38 GMKPKMLVKEGDRVKAGQPLFEDK-KNPGVKFTSPVSGTVKAINR   81 (257)
T ss_pred             CCCccEEeccCCEEeCCCeeEeeC-CCCCcEEecCCCeEEEEEec
Confidence            666789999999999999999743 22466789999999998865

The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process

>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry

Probab=93.44  E-value=0.073  Score=52.72  Aligned_cols=37  Identities=30%  Similarity=0.458  Sum_probs=25.9

Q ss_pred             eEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchhh
Q 012955          102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAE  138 (452)
Q Consensus       102 ~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~~  138 (452)
                      ..|.++.+|+|.+|+|++|+.|+.|++|+.|++....
T Consensus         2 ~~Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD~~~~~   38 (305)
T PF00529_consen    2 KIVQSLVGGIVTEILVKEGQRVKKGQVLARLDPTDYE   38 (305)
T ss_dssp             EEE--SS-EEEEEE-S-TTEEE-TTSECEEE--HHHH
T ss_pred             EEEeCCCCeEEEEEEccCcCEEeCCCEEEEEEeeccc
Confidence            5789999999999999999999999999999865543

; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=93.19  E-value=0.17  Score=51.15  Aligned_cols=37  Identities=19%  Similarity=0.261  Sum_probs=34.0

Q ss_pred             eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchh
Q 012955          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA  137 (452)
Q Consensus       101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~  137 (452)
                      .+.|.++.+|+|.++++++|+.|..|++|+.|+..+.
T Consensus        42 ~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~~~~   78 (334)
T TIGR00998        42 QLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDPTNA   78 (334)
T ss_pred             eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECchHH
Confidence            6789999999999999999999999999999976543

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=93.05  E-value=0.22  Score=50.97  Aligned_cols=42  Identities=14%  Similarity=0.235  Sum_probs=36.3

Q ss_pred             EEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955           93 VVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus        93 ~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      +.|+.+  .+.|.++.+|+|.++++++|+.|..|++|+.|+..+
T Consensus        42 ~~v~~~--~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~~~   83 (346)
T PRK10476         42 AYIDAD--VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDPRP   83 (346)
T ss_pred             eEEEee--eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECcHH
Confidence            444544  688999999999999999999999999999997654

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=93.02  E-value=0.12  Score=41.05  Aligned_cols=34  Identities=15%  Similarity=0.284  Sum_probs=29.0

Q ss_pred             EEEcCCCeEEEE------EEeCCCCccCCCCeEEEEecch
Q 012955          103 DVETFYDGILAA------IVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus       103 ev~ap~~G~l~~------i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      +|++|.-|.+.+      +++++|+.|..|++|+.|+...
T Consensus         2 ~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K   41 (74)
T PF00364_consen    2 EIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMK   41 (74)
T ss_dssp             EEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSS
T ss_pred             EEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCc
Confidence            678888887655      9999999999999999997643

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=92.45  E-value=0.37  Score=50.87  Aligned_cols=58  Identities=19%  Similarity=0.200  Sum_probs=45.0

Q ss_pred             EcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchh
Q 012955           79 IKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA  137 (452)
Q Consensus        79 ~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~  137 (452)
                      .++.|+.-..=+....|+. .-.+.|.++.+|+|.++++++|+.|+.|++|+.|.+.+.
T Consensus        66 ~v~~~~~~~~i~~~Gtv~a-~~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~~~  123 (415)
T PRK11556         66 TATEQAVPRYLTGLGTVTA-ANTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPRPF  123 (415)
T ss_pred             EEEEeccceEEEEEEEEEe-eeEEEEEccccEEEEEEECCCCCEecCCCEEEEECcHHH
Confidence            3444444333445677776 357889999999999999999999999999999976543

>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry

Probab=92.45  E-value=0.13  Score=50.97  Aligned_cols=29  Identities=17%  Similarity=0.358  Sum_probs=21.1

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCce
Q 012955           72 EGKIVSWIKSEGDVLSKGESVVVVESDKA  100 (452)
Q Consensus        72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~  100 (452)
                      .|.|.+++|++||.|++||+|+++..-..
T Consensus         9 ~G~V~~i~V~eG~~VkkGq~L~~LD~~~~   37 (305)
T PF00529_consen    9 GGIVTEILVKEGQRVKKGQVLARLDPTDY   37 (305)
T ss_dssp             -EEEEEE-S-TTEEE-TTSECEEE--HHH
T ss_pred             CeEEEEEEccCcCEEeCCCEEEEEEeecc
Confidence            39999999999999999999999985443

; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=92.43  E-value=0.2  Score=45.75  Aligned_cols=35  Identities=29%  Similarity=0.366  Sum_probs=31.8

Q ss_pred             eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus       101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      ...|.||..|+|.++++++||.|..|+.|+.++..
T Consensus        84 ~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEam  118 (153)
T PRK05641         84 ENVVTAPMPGKILRILVREGQQVKVGQGLLILEAM  118 (153)
T ss_pred             CCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeec
Confidence            35699999999999999999999999999999643

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=92.28  E-value=0.44  Score=49.60  Aligned_cols=57  Identities=16%  Similarity=0.098  Sum_probs=44.6

Q ss_pred             EcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955           79 IKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus        79 ~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      .++.|+....-+....|+..+ ..+|.++.+|+|.++++++|+.|+.|++|+.|++.+
T Consensus        40 ~v~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~~   96 (385)
T PRK09859         40 TLSPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAP   96 (385)
T ss_pred             EeEEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCcCEecCCCEEEEECcHH
Confidence            334444444445566777554 678999999999999999999999999999997654

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=92.05  E-value=0.23  Score=50.31  Aligned_cols=43  Identities=16%  Similarity=0.262  Sum_probs=36.4

Q ss_pred             EEEeCceeeEEEcCCC---eEEEEEEeCCCCccCCCCeEEEEecch
Q 012955           94 VVESDKADMDVETFYD---GILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus        94 ~vetdK~~~ev~ap~~---G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      .|+...-...|.++.+   |+|.+++|++|+.|..|++|+.|++..
T Consensus         6 ~v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~~~   51 (327)
T TIGR02971         6 RLEPEGEVVAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDSRP   51 (327)
T ss_pred             eEeecCceEEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecCcH
Confidence            4454444667899999   999999999999999999999997654

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit

Probab=91.81  E-value=0.17  Score=53.94  Aligned_cols=54  Identities=13%  Similarity=0.084  Sum_probs=42.8

Q ss_pred             EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEE
Q 012955           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV  116 (452)
Q Consensus        59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~  116 (452)
                      .++.+| +.  ...|.--+.+|++||+|++||+|++-.. -....+.||.+|+|..|.
T Consensus        27 ~~v~ip-l~--q~~G~~~k~~Vk~GD~V~~Gq~I~~~~~-~~s~~ihApvSGtV~~I~   80 (447)
T TIGR01936        27 PTVAVD-GR--DFVGMRPKMKVRPGDKVKAGQPLFEDKK-NPGVKFTSPVSGEVVAIN   80 (447)
T ss_pred             cEEEEe-ch--hcCCCCCceEeCcCCEEcCCCEeEecCC-CceEEEEcCCCeEEEEEe
Confidence            455555 22  2347777899999999999999998763 368899999999999994

This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=91.40  E-value=0.56  Score=55.63  Aligned_cols=62  Identities=11%  Similarity=0.154  Sum_probs=50.1

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      |+..++.++.++.+..++.....+. .-...|.||..|.|.++++++||.|..|++|++++..
T Consensus      1047 Gq~reV~V~D~s~~~~~~~~~KAd~-~~~~~I~a~~~G~v~~~~v~~Gd~V~~Gd~L~~iEam 1108 (1143)
T TIGR01235      1047 GQPRRIKVPDRSHKAEAAVRRKADP-GNPAHVGAPMPGVIIEVKVSSGQAVNKGDPLVVLEAM 1108 (1143)
T ss_pred             CeEEEEEecCccccccccccccccc-ccCceeecCCCcEEEEEEeCCCCEeCCCCEEEEEEec
Confidence            5777888888888877766554432 2235699999999999999999999999999999763

This enzyme plays a role in gluconeogensis but not glycolysis.

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=91.17  E-value=0.39  Score=47.87  Aligned_cols=36  Identities=22%  Similarity=0.400  Sum_probs=32.9

Q ss_pred             eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus       101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      ...|.+|.+|+|.++++++|+.|..|++|+.+...+
T Consensus        26 ~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~~~   61 (322)
T TIGR01730        26 EADLAAEVAGKITKISVREGQKVKKGQVLARLDDDD   61 (322)
T ss_pred             EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECCHH
Confidence            568999999999999999999999999999997544

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>PRK05035 electron transport complex protein RnfC; Provisional

Probab=91.16  E-value=0.35  Score=54.37  Aligned_cols=54  Identities=20%  Similarity=0.299  Sum_probs=41.7

Q ss_pred             EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEE
Q 012955           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV  116 (452)
Q Consensus        59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~  116 (452)
                      ..+++| |..  .-|.--+.+|++||+|.+||+|++-+ .-....|.||.+|+|..|.
T Consensus        35 ~~~~ip-l~q--hiG~~~~~~V~~GD~V~~GQ~i~~~~-~~~s~~vhApvSG~V~~I~   88 (695)
T PRK05035         35 QRLVIP-LKQ--HIGAEGELCVKVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVVAIE   88 (695)
T ss_pred             CEEEEE-Ccc--CCCCCCcceeCcCCEEcCCCEeeecC-CCceeEEeCCCCeEEeeec
Confidence            456666 433  23666778999999999999999764 3367999999999998763

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=91.09  E-value=0.46  Score=49.12  Aligned_cols=60  Identities=17%  Similarity=0.234  Sum_probs=43.1

Q ss_pred             EEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955           75 IVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus        75 I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      +.-+.++.|+....=..-+.|+.. -...|.++.+|+|.++++++|+.|+.|++|+.++..
T Consensus        36 v~~~~v~~~~~~~~i~~~G~v~~~-~~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~~   95 (370)
T PRK11578         36 YQTLIVRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE   95 (370)
T ss_pred             eEEEEEEeeeeEEEEEEEEEEEee-eEEEEecccceEEEEEEcCCCCEEcCCCEEEEECcH
Confidence            333444555433322344455544 355899999999999999999999999999999654

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=90.98  E-value=0.47  Score=50.67  Aligned_cols=40  Identities=8%  Similarity=0.079  Sum_probs=34.7

Q ss_pred             CceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchh
Q 012955           98 DKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA  137 (452)
Q Consensus        98 dK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~  137 (452)
                      +.-...|.++..|+|.+++|++||.|..|++|+.+.+...
T Consensus        56 ~~~~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~~~   95 (457)
T TIGR01000        56 AKILSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDNGNE   95 (457)
T ss_pred             cCceEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECchHH
Confidence            3335678999999999999999999999999999976543

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C

Probab=90.81  E-value=0.26  Score=49.27  Aligned_cols=42  Identities=21%  Similarity=0.352  Sum_probs=28.9

Q ss_pred             EEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955           92 VVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus        92 l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      -+.|+.  -+..|.++.+|+| ++++++|+.|..|++|+.+...+
T Consensus        14 ~G~v~~--~~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~~~   55 (328)
T PF12700_consen   14 SGTVEP--NEVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDSSD   55 (328)
T ss_dssp             EEEEEE--SEEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-HH
T ss_pred             EEEEEE--EEEEEECCCCEEE-EEEeCCcCEECCCCEEEEEEChh
Confidence            345554  4567999999999 99999999999999999997654

...

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=90.76  E-value=0.46  Score=48.13  Aligned_cols=36  Identities=8%  Similarity=0.203  Sum_probs=33.1

Q ss_pred             eEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchh
Q 012955          102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA  137 (452)
Q Consensus       102 ~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~  137 (452)
                      +.|.++.+|+|.++++++||.|+.|++|+.|+..+-
T Consensus        48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~   83 (310)
T PRK10559         48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQPRY   83 (310)
T ss_pred             EEEccCCceEEEEEEeCCcCEEcCCCEEEEECcHHH
Confidence            669999999999999999999999999999987553

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=90.72  E-value=0.46  Score=49.70  Aligned_cols=37  Identities=14%  Similarity=0.208  Sum_probs=34.3

Q ss_pred             eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchh
Q 012955          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA  137 (452)
Q Consensus       101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~  137 (452)
                      .+.|.++.+|+|.++++++|+.|+.|++|+.|++.+-
T Consensus        61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~~~~   97 (390)
T PRK15136         61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPTDA   97 (390)
T ss_pred             EEEEeccCCeEEEEEEcCCCCEECCCCEEEEECcHHH
Confidence            7889999999999999999999999999999986553

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=90.39  E-value=0.92  Score=47.16  Aligned_cols=55  Identities=18%  Similarity=0.138  Sum_probs=41.9

Q ss_pred             CCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955           81 SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus        81 ~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      +.|+.-..-...+.|+.+ -..+|.++.+|+|.++++++|+.|+.|++|+.|++.+
T Consensus        44 ~~~~~~~~i~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~~   98 (385)
T PRK09578         44 RPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPAP   98 (385)
T ss_pred             EEecccceEEEEEEEEEe-eEEEEeccCcEEEEEEECCCCCEEcCCCEEEEECCHH
Confidence            334333333445666654 4679999999999999999999999999999996654

>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional

Probab=89.96  E-value=0.47  Score=50.68  Aligned_cols=54  Identities=17%  Similarity=0.167  Sum_probs=41.8

Q ss_pred             EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEE
Q 012955           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV  116 (452)
Q Consensus        59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~  116 (452)
                      .++.+| +.  ..-|.--+.+|++||+|++||.|++-... ....+.||.+|+|..|.
T Consensus        28 ~~~~ip-l~--qh~G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~   81 (448)
T PRK05352         28 KTVALL-GE--DYVGLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAIN   81 (448)
T ss_pred             CEEEEe-ch--hcCCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEc
Confidence            455555 22  23366778999999999999999966533 57899999999999994

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=89.70  E-value=0.59  Score=48.55  Aligned_cols=44  Identities=25%  Similarity=0.286  Sum_probs=38.2

Q ss_pred             EEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955           93 VVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus        93 ~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      +.|........|.++.+|+|.+++|++||.|..|++|+.++...
T Consensus        35 G~v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~~~   78 (423)
T TIGR01843        35 GKVVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELDATD   78 (423)
T ss_pred             eEEEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEccch
Confidence            35566777777999999999999999999999999999997654

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=89.65  E-value=0.64  Score=49.00  Aligned_cols=38  Identities=16%  Similarity=0.228  Sum_probs=33.8

Q ss_pred             eeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchh
Q 012955          100 ADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA  137 (452)
Q Consensus       100 ~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~  137 (452)
                      -...|.++.+|+|.++++++|+.|+.|++|+.|++...
T Consensus        57 ~~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~~~~   94 (421)
T TIGR03794        57 GVDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQPEL   94 (421)
T ss_pred             ceeEEECCCCeEEEEEECCCcCEECCCCEEEEECcHHH
Confidence            34589999999999999999999999999999976543

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=89.55  E-value=0.6  Score=47.42  Aligned_cols=36  Identities=25%  Similarity=0.430  Sum_probs=33.2

Q ss_pred             eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus       101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      .+.|.++..|+|.++++++||.|+.|++|+.|+..+
T Consensus        43 ~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~~~   78 (331)
T PRK03598         43 TVNLGFRVGGRLASLAVDEGDAVKAGQVLGELDAAP   78 (331)
T ss_pred             EEEeecccCcEEEEEEcCCCCEEcCCCEEEEEChHH
Confidence            668999999999999999999999999999997653

>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]

Probab=89.52  E-value=0.32  Score=38.99  Aligned_cols=30  Identities=17%  Similarity=0.317  Sum_probs=21.3

Q ss_pred             CceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 012955           70 MTEGKIVSWIKSEGDVLSKGESVVVVESDK   99 (452)
Q Consensus        70 ~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK   99 (452)
                      ++.+.=+.++++.||.|++||+||+|=++.
T Consensus        28 ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~   57 (75)
T PF07831_consen   28 IDPAVGIELHKKVGDRVEKGDPLATIYAND   57 (75)
T ss_dssp             --TT-EEEESS-TTSEEBTTSEEEEEEESS
T ss_pred             cCcCcCeEecCcCcCEECCCCeEEEEEcCC
Confidence            344555789999999999999999886653

It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....

>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=89.44  E-value=0.93  Score=45.59  Aligned_cols=43  Identities=21%  Similarity=0.278  Sum_probs=30.7

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeC--ceeeEEEcCCCeEEEEE
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVESD--KADMDVETFYDGILAAI  115 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vetd--K~~~ev~ap~~G~l~~i  115 (452)
                      +=|.+..++.||.|++||.|++|-.-  ....++.||.+|+|..+
T Consensus       239 ~Gi~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~  283 (293)
T cd06255         239 GGLFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI  283 (293)
T ss_pred             CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence            44667778888888888888888531  23456788888888554

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit

Probab=88.67  E-value=0.48  Score=50.41  Aligned_cols=43  Identities=21%  Similarity=0.249  Sum_probs=37.2

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEE
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV  116 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~  116 (452)
                      |.--+..|++||+|++||.|++.+ ......|.||.+|+|.+|.
T Consensus        40 g~~~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~   82 (435)
T TIGR01945        40 GAPAEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE   82 (435)
T ss_pred             CCCCceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence            555678999999999999999984 4578999999999998773

The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=88.58  E-value=0.83  Score=47.79  Aligned_cols=44  Identities=14%  Similarity=0.105  Sum_probs=37.2

Q ss_pred             EEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchh
Q 012955           93 VVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA  137 (452)
Q Consensus        93 ~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~  137 (452)
                      ..|+. .-..+|.+..+|+|.++++++||.|..|++|+.|+..+-
T Consensus        58 G~v~a-~~~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~  101 (397)
T PRK15030         58 GRTSA-YRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATY  101 (397)
T ss_pred             EEEEE-EEEEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCHHH
Confidence            45553 347889999999999999999999999999999976543

>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]

Probab=88.42  E-value=0.53  Score=48.21  Aligned_cols=43  Identities=23%  Similarity=0.227  Sum_probs=34.0

Q ss_pred             EEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCC
Q 012955           76 VSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE  119 (452)
Q Consensus        76 ~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~  119 (452)
                      -..+|++||.|++||+|+|-. ----+-+.||.+|+|..|+-.+
T Consensus        41 p~mkV~~gD~VkkGq~LfEdK-knpgv~~Tap~sG~V~aI~RG~   83 (447)
T COG1726          41 PSMKVREGDAVKKGQVLFEDK-KNPGVVFTAPVSGKVTAIHRGE   83 (447)
T ss_pred             CcceeccCCeeeccceeeecc-cCCCeEEeccCCceEEEeeccc
Confidence            346899999999999999843 1146779999999999886543

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=87.99  E-value=0.49  Score=43.27  Aligned_cols=26  Identities=27%  Similarity=0.593  Sum_probs=23.9

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEE
Q 012955           71 TEGKIVSWIKSEGDVLSKGESVVVVE   96 (452)
Q Consensus        71 ~eg~I~~w~v~~Gd~V~~gd~l~~ve   96 (452)
                      ..|+|.+|+++.||.|+.||+|++|+
T Consensus       131 ~~G~v~~i~v~~g~~V~~Gq~L~~i~  156 (156)
T TIGR00531       131 VAGKVVEILVENGQPVEYGQPLIVIE  156 (156)
T ss_pred             CCcEEEEEEeCCCCEECCCCEEEEEC
Confidence            36899999999999999999999985

The gene name is accB or fabE.

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=87.56  E-value=0.6  Score=42.68  Aligned_cols=26  Identities=19%  Similarity=0.437  Sum_probs=24.0

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEE
Q 012955           71 TEGKIVSWIKSEGDVLSKGESVVVVE   96 (452)
Q Consensus        71 ~eg~I~~w~v~~Gd~V~~gd~l~~ve   96 (452)
                      .+|+|++|+++.||.|..||+|++|+
T Consensus       130 ~~G~i~~i~v~~g~~V~~Gq~L~~i~  155 (155)
T PRK06302        130 KSGVVTEILVENGQPVEFGQPLFVIE  155 (155)
T ss_pred             CCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence            46999999999999999999999985

>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3

Probab=87.40  E-value=1.5  Score=43.57  Aligned_cols=59  Identities=24%  Similarity=0.295  Sum_probs=48.4

Q ss_pred             EEEEEEEcCCCCeecCCCeE--EEEEe--CceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955           73 GKIVSWIKSEGDVLSKGESV--VVVES--DKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l--~~vet--dK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~  133 (452)
                      +=+.++.++.||.|++||+|  ..+-.  +-...++++|.+|+|  +.....-.|..|+.|+.+.
T Consensus       228 ~G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~i--i~~~~~~~v~~G~~l~~v~  290 (292)
T PF04952_consen  228 GGLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGII--IFIRESPYVEQGDALAKVA  290 (292)
T ss_dssp             SEEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEE--ESECTSSECTTTEEEEEEE
T ss_pred             cEEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEE--EEeCcccccCCCCeEEEEe
Confidence            45779999999999999999  55442  233568999999999  6778888999999999875

5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=86.89  E-value=1  Score=47.46  Aligned_cols=28  Identities=21%  Similarity=0.314  Sum_probs=25.6

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 012955           72 EGKIVSWIKSEGDVLSKGESVVVVESDK   99 (452)
Q Consensus        72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK   99 (452)
                      .|.|.+++|++||.|++||+|+.++...
T Consensus        66 ~G~V~~i~V~eG~~V~kGq~L~~l~~~~   93 (421)
T TIGR03794        66 SGVVIDLDVEVGDQVKKGQVVARLFQPE   93 (421)
T ss_pred             CeEEEEEECCCcCEECCCCEEEEECcHH
Confidence            3999999999999999999999998653

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=86.30  E-value=1.1  Score=47.79  Aligned_cols=27  Identities=22%  Similarity=0.311  Sum_probs=24.9

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCc
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVESDK   99 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vetdK   99 (452)
                      |.|.+++|++||.|++||+|+.+....
T Consensus        68 G~v~~i~V~eG~~V~~G~~L~~ld~~~   94 (457)
T TIGR01000        68 NAIKENYLKENKFVKKGDLLVVYDNGN   94 (457)
T ss_pred             cEEEEEEcCCCCEecCCCEEEEECchH
Confidence            999999999999999999999997543

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=86.25  E-value=1.2  Score=43.96  Aligned_cols=26  Identities=27%  Similarity=0.488  Sum_probs=24.2

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEE
Q 012955           71 TEGKIVSWIKSEGDVLSKGESVVVVE   96 (452)
Q Consensus        71 ~eg~I~~w~v~~Gd~V~~gd~l~~ve   96 (452)
                      .+|+|.+|++++||.|..||.|++||
T Consensus       248 ~sGtV~eIlVkeGD~V~vGqpL~~IE  273 (274)
T PLN02983        248 QSGTIVEILAEDGKPVSVDTPLFVIE  273 (274)
T ss_pred             CCeEEEEEecCCCCEeCCCCEEEEec
Confidence            36999999999999999999999985

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=86.09  E-value=1.7  Score=45.84  Aligned_cols=46  Identities=13%  Similarity=0.125  Sum_probs=37.6

Q ss_pred             eEEEEEeCc-eeeEEEcCCCeEEEEEE-eCCCCccCCCCeEEEEecch
Q 012955           91 SVVVVESDK-ADMDVETFYDGILAAIV-VPEGESAPVGAAIGILAETE  136 (452)
Q Consensus        91 ~l~~vetdK-~~~ev~ap~~G~l~~i~-v~~G~~v~~G~~l~~i~~~~  136 (452)
                      ..+.|+-|. -...|.++.+|+|.+++ +.+||.|..|++|+.|+..+
T Consensus       112 ~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~spe  159 (409)
T PRK09783        112 FPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPD  159 (409)
T ss_pred             EeEEEEECCCceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeCHH
Confidence            345566443 35679999999999998 99999999999999997544

>COG4072 Uncharacterized protein conserved in archaea [Function unknown]

Probab=85.41  E-value=1.8  Score=38.48  Aligned_cols=45  Identities=27%  Similarity=0.415  Sum_probs=40.7

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeE-EEcCCCeEEEEE
Q 012955           71 TEGKIVSWIKSEGDVLSKGESVVVVESDKADMD-VETFYDGILAAI  115 (452)
Q Consensus        71 ~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~e-v~ap~~G~l~~i  115 (452)
                      .||-++-..+..|+.|.+||+++-|.|-|-++- +++|.+|++.-+
T Consensus        98 vEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi  143 (161)
T COG4072          98 VEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYI  143 (161)
T ss_pred             cCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEE
Confidence            568999999999999999999999999998776 899999999654

>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2

Probab=85.18  E-value=0.79  Score=37.64  Aligned_cols=23  Identities=26%  Similarity=0.697  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCeecCCCeEEEEEe
Q 012955           75 IVSWIKSEGDVLSKGESVVVVES   97 (452)
Q Consensus        75 I~~w~v~~Gd~V~~gd~l~~vet   97 (452)
                      =++|++++||.|++||+|++++-
T Consensus        46 ~v~~~~~dG~~v~~g~~i~~i~G   68 (88)
T PF02749_consen   46 EVEWLVKDGDRVEPGDVILEIEG   68 (88)
T ss_dssp             EEEESS-TT-EEETTCEEEEEEE
T ss_pred             EEEEEeCCCCCccCCcEEEEEEe
Confidence            46799999999999999999984

4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....

>PRK09439 PTS system glucose-specific transporter subunit; Provisional

Probab=84.16  E-value=2.2  Score=39.65  Aligned_cols=66  Identities=29%  Similarity=0.410  Sum_probs=49.6

Q ss_pred             EEEEcCCCCCCCceEEEEEEEcCCCCeecC----CCeEEEEEeCceeeEEEcCCCeEEEEE-------------------
Q 012955           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSK----GESVVVVESDKADMDVETFYDGILAAI-------------------  115 (452)
Q Consensus        59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~----gd~l~~vetdK~~~ev~ap~~G~l~~i-------------------  115 (452)
                      ..|.-| +.     |+++.+. ++-|.|=.    ||-++..=++   ..|.||++|+|..+                   
T Consensus        21 ~~i~aP-~~-----G~vi~L~-~V~D~vFs~k~mGdGvAI~P~~---~~v~AP~dG~V~~vf~T~HAigi~t~~G~eiLI   90 (169)
T PRK09439         21 IEIIAP-LS-----GEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFV   90 (169)
T ss_pred             eEEEec-CC-----eEEEEhH-HCCChHhcccCccceEEEEccC---CEEEecCCeEEEEEcCCCCEEEEEeCCCcEEEE
Confidence            346666 33     7777765 55665554    8888877654   57889999988776                   


Q ss_pred             ----------------EeCCCCccCCCCeEEEEec
Q 012955          116 ----------------VVPEGESAPVGAAIGILAE  134 (452)
Q Consensus       116 ----------------~v~~G~~v~~G~~l~~i~~  134 (452)
                                      ++++||.|..|++|+.+.-
T Consensus        91 HiGiDTV~L~G~gF~~~Vk~Gd~Vk~G~~L~~~D~  125 (169)
T PRK09439         91 HFGIDTVELKGEGFKRIAEEGQRVKVGDPIIEFDL  125 (169)
T ss_pred             EEeecccccCCCceEEEecCCCEEeCCCEEEEEcH
Confidence                            6899999999999999953

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=84.06  E-value=1.7  Score=46.61  Aligned_cols=28  Identities=25%  Similarity=0.556  Sum_probs=25.7

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 012955           71 TEGKIVSWIKSEGDVLSKGESVVVVESD   98 (452)
Q Consensus        71 ~eg~I~~w~v~~Gd~V~~gd~l~~vetd   98 (452)
                      ..|+|.+|++++||.|..||+|++|+.+
T Consensus       141 ~~G~v~~ilv~eGd~V~vG~~L~~I~~~  168 (463)
T PLN02226        141 ASGVIQEFLVKEGDTVEPGTKVAIISKS  168 (463)
T ss_pred             CCeEEEEEEeCCCCEecCCCEEEEeccC
Confidence            4699999999999999999999999854

>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]

Probab=83.97  E-value=0.93  Score=48.71  Aligned_cols=53  Identities=23%  Similarity=0.276  Sum_probs=42.6

Q ss_pred             EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEE
Q 012955           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV  116 (452)
Q Consensus        59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~  116 (452)
                      .++++| |..  +-|.=...+|++||+|.+||.|.+=+.  ....+.||.+|+|.+|.
T Consensus        31 ~~~~iP-l~q--h~g~~~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~   83 (529)
T COG4656          31 QRALIP-LKQ--HIGAPGILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE   83 (529)
T ss_pred             cceEEe-eec--ccCCccceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence            455666 332  234446789999999999999998875  88999999999999986

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=83.95  E-value=1.3  Score=48.88  Aligned_cols=35  Identities=23%  Similarity=0.369  Sum_probs=32.0

Q ss_pred             eEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955          102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus       102 ~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      -+|.||..|.|.++++++||.|..|++|+.++...
T Consensus       526 ~~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iEamK  560 (596)
T PRK14042        526 GDITVAIPGSIIAIHVSAGDEVKAGQAVLVIEAMK  560 (596)
T ss_pred             CeEecCcceEEEEEEeCCCCEeCCCCEEEEEEecc
Confidence            36999999999999999999999999999997643

>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=83.68  E-value=0.81  Score=41.83  Aligned_cols=55  Identities=25%  Similarity=0.198  Sum_probs=42.5

Q ss_pred             EEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCC
Q 012955           60 EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE  119 (452)
Q Consensus        60 ~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~  119 (452)
                      +..-+.||+    ...++. =++|-.|.+||.++.||+=|+.-+|-+|.+|.|.+|.-+-
T Consensus        73 ~~A~~~LGd----vv~veL-Pe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l  127 (172)
T KOG3373|consen   73 DFAQEHLGD----VVYVEL-PEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKL  127 (172)
T ss_pred             hhhhhhcCc----eEEEEc-CCCCCccccCcceeeeeehhhhhhhhCcCCceEEEecccc
Confidence            333444553    433433 3789999999999999999999999999999999986443

>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit

Probab=83.68  E-value=2.7  Score=37.05  Aligned_cols=19  Identities=21%  Similarity=0.197  Sum_probs=17.0

Q ss_pred             EeCCCCccCCCCeEEEEec
Q 012955          116 VVPEGESAPVGAAIGILAE  134 (452)
Q Consensus       116 ~v~~G~~v~~G~~l~~i~~  134 (452)
                      ++++||.|..|++|+.+..
T Consensus        85 ~vk~Gd~V~~G~~l~~~D~  103 (124)
T cd00210          85 HVEEGQRVKQGDKLLEFDL  103 (124)
T ss_pred             EecCCCEEcCCCEEEEEcH
Confidence            6899999999999999953

The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.

>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]

Probab=83.40  E-value=4.3  Score=40.28  Aligned_cols=47  Identities=26%  Similarity=0.316  Sum_probs=37.3

Q ss_pred             CCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955           88 KGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus        88 ~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      .-.....++. .-..++.++..|.|.++++++||.|..|++|+.+++.
T Consensus        54 ~~~~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~~  100 (372)
T COG0845          54 AVRAPGRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDPS  100 (372)
T ss_pred             ceeeeeEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECCc
Confidence            3344445554 3344788889999999999999999999999999873

>PF13437 HlyD_3: HlyD family secretion protein

Probab=83.09  E-value=2.3  Score=35.35  Aligned_cols=28  Identities=25%  Similarity=0.408  Sum_probs=25.3

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 012955           71 TEGKIVSWIKSEGDVLSKGESVVVVESD   98 (452)
Q Consensus        71 ~eg~I~~w~v~~Gd~V~~gd~l~~vetd   98 (452)
                      ..|.|..|.+++|+.|..|+.|++|...
T Consensus         6 ~~G~V~~~~~~~G~~v~~g~~l~~i~~~   33 (105)
T PF13437_consen    6 FDGVVVSINVQPGEVVSAGQPLAEIVDT   33 (105)
T ss_pred             CCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence            3599999999999999999999999853

>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria

Probab=82.86  E-value=2.3  Score=37.87  Aligned_cols=58  Identities=26%  Similarity=0.388  Sum_probs=40.0

Q ss_pred             EEEEEEEcCCCCee----cCCCeEEEEEeCceeeEEEcCCCeEEEEE---------------------------------
Q 012955           73 GKIVSWIKSEGDVL----SKGESVVVVESDKADMDVETFYDGILAAI---------------------------------  115 (452)
Q Consensus        73 g~I~~w~v~~Gd~V----~~gd~l~~vetdK~~~ev~ap~~G~l~~i---------------------------------  115 (452)
                      |+++.+. +.-|.+    --||.++..=++.   .|-||++|+|..+                                 
T Consensus        11 G~vi~l~-~v~D~vFs~~~lG~GvaI~p~~~---~v~AP~~G~v~~i~~T~HAi~i~s~~G~eiLiHiGidTv~L~G~gF   86 (132)
T PF00358_consen   11 GKVIPLE-EVPDPVFSQKMLGDGVAIIPSDG---KVYAPVDGTVTMIFPTKHAIGIRSDNGVEILIHIGIDTVKLNGEGF   86 (132)
T ss_dssp             EEEEEGG-GSSSHHHHTTSSSEEEEEEESSS---EEEESSSEEEEEE-TTSSEEEEEETTSEEEEEE-SBSGGGGTTTTE
T ss_pred             cEEEEhh-hCCchHHCCCCCcCEEEEEcCCC---eEEEEeeEEEEEEcCCCCEEEEEeCCCCEEEEEEccchhhcCCcce
Confidence            6666443 455554    2367777665553   6788999988877                                 


Q ss_pred             --EeCCCCccCCCCeEEEEec
Q 012955          116 --VVPEGESAPVGAAIGILAE  134 (452)
Q Consensus       116 --~v~~G~~v~~G~~l~~i~~  134 (452)
                        ++++||.|..|++|+.+..
T Consensus        87 ~~~v~~G~~V~~G~~L~~~D~  107 (132)
T PF00358_consen   87 ETLVKEGDKVKAGQPLIEFDL  107 (132)
T ss_dssp             EESS-TTSEE-TTEEEEEE-H
T ss_pred             EEEEeCCCEEECCCEEEEEcH
Confidence              6789999999999999953

The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=82.68  E-value=2.4  Score=42.77  Aligned_cols=36  Identities=25%  Similarity=0.443  Sum_probs=30.1

Q ss_pred             eEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 012955           58 IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDK   99 (452)
Q Consensus        58 ~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK   99 (452)
                      ..+|..|      ..|+|.++++++||.|..|++|+.|+.+.
T Consensus        45 ~~~~~a~------~~g~~~~~~~~~g~~v~~g~~l~~i~~~~   80 (371)
T PRK14875         45 TNEVEAP------AAGTLRRQVAQEGETLPVGALLAVVADAE   80 (371)
T ss_pred             eEEEecC------CCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence            3455555      45999999999999999999999998654

>TIGR00830 PTBA PTS system, glucose subfamily, IIA component

Probab=82.17  E-value=3.2  Score=36.43  Aligned_cols=20  Identities=20%  Similarity=0.165  Sum_probs=17.6

Q ss_pred             EEeCCCCccCCCCeEEEEec
Q 012955          115 IVVPEGESAPVGAAIGILAE  134 (452)
Q Consensus       115 i~v~~G~~v~~G~~l~~i~~  134 (452)
                      .++++||.|..|++|+.+..
T Consensus        84 ~~v~~Gd~V~~G~~l~~~D~  103 (121)
T TIGR00830        84 SHVEEGQRVKKGDPLLEFDL  103 (121)
T ss_pred             EEecCCCEEcCCCEEEEEcH
Confidence            47899999999999999953

These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=81.23  E-value=3  Score=46.22  Aligned_cols=35  Identities=23%  Similarity=0.334  Sum_probs=32.0

Q ss_pred             eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus       101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      ...|.||..|.|.++++++||.|..|++|+.++..
T Consensus       524 ~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iEam  558 (593)
T PRK14040        524 GEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILEAM  558 (593)
T ss_pred             CceEECCccEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence            44799999999999999999999999999999653

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=81.14  E-value=2  Score=47.52  Aligned_cols=35  Identities=23%  Similarity=0.343  Sum_probs=32.2

Q ss_pred             eEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955          102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus       102 ~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      ..|.||..|.|.++++++||.|..|++|+.++...
T Consensus       518 ~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iEamK  552 (582)
T TIGR01108       518 TPVTAPIAGSIVKVKVSEGQTVAEGEVLLILEAMK  552 (582)
T ss_pred             CeEeCCccEEEEEEEeCCCCEECCCCEEEEEEecc
Confidence            47999999999999999999999999999997643

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein

Probab=81.07  E-value=3  Score=39.31  Aligned_cols=53  Identities=23%  Similarity=0.365  Sum_probs=41.1

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEE
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIG  130 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~  130 (452)
                      ++|+.| +++|+.+++||.+..++-. .++++--|.+   .++.+++|+.|..|+.|.
T Consensus       130 ~~i~~~-~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~V~~G~tli  182 (189)
T TIGR00164       130 RRIVCY-VKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEKVTAGETVL  182 (189)
T ss_pred             cEEEEe-cCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCEEEeceEEE
Confidence            445444 5899999999999999966 5566666665   267899999999999653

It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=80.85  E-value=3.8  Score=31.77  Aligned_cols=33  Identities=15%  Similarity=0.316  Sum_probs=27.2

Q ss_pred             eeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEE
Q 012955           57 KIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVV   95 (452)
Q Consensus        57 ~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~v   95 (452)
                      ...+|.-|      .+|+|++|+++.|+.|..|+.|+.|
T Consensus        41 ~~~~i~ap------~~G~v~~~~~~~g~~v~~g~~l~~i   73 (73)
T cd06663          41 ATSDVEAP------KSGTVKKVLVKEGTKVEGDTPLVKI   73 (73)
T ss_pred             eEEEEEcC------CCEEEEEEEeCCCCEECCCCEEEEC
Confidence            44556666      3599999999999999999999875

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	452
3b8k_A	239	Structure Of The Truncated Human Dihydrolipoyl Acet		6e-17
3duf_I	428	Snapshots Of Catalysis In The E1 Subunit Of The Pyr		8e-14
1zy8_L	229	The Crystal Structure Of Dihydrolipoamide Dehydroge		2e-11
2dnc_A	98	Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain		7e-11
1c4t_A	233	Catalytic Domain From Trimeric Dihydrolipoamide Suc		1e-09
1y8n_B	128	Crystal Structure Of The Pdk3-L2 Complex Length = 1		1e-08
1fyc_A	106	Inner Lipoyl Domain From Human Pyruvate Dehydrogena		2e-08
3crk_C	87	Crystal Structure Of The Pdhk2-L2 Complex. Length =		8e-08
3l60_A	250	Crystal Structure Of Branched-Chain Alpha-Keto Acid		1e-07
1b5s_A	242	Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalyt		1e-07
2dne_A	108	Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain		1e-07
2ihw_A	262	Crystal Structure Of A Cubic Core Of The Dihydrolip		3e-06
2l5t_A	77	Solution Nmr Structure Of E2 Lipoyl Domain From The		1e-04
3mae_A	256	Crystal Structure Of Probable Dihydrolipamide Acety		3e-04
1ghj_A	79	Solution Structure Of The Lipoyl Domain Of The 2- O		3e-04
1pmr_A	80	Lipoyl Domain From The Dihydrolipoyl Succinyltransf		9e-04

>pdb|3B8K|A Chain A, Structure Of The Truncated Human Dihydrolipoyl Acetyltransferase (E2) Length = 239

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Query: 352 GGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDA 411
            GLITP++ +A    +  ++     L  KAR  +LQPHE+  GTFT+SNLGMFG+  F A
Sbjct: 111 AGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSA 170
Query: 412 ILPPGQGAIMAVGASKPTVV-ADADGFFGVKSKMLVSL 448
           I+ P Q  I+A+GAS+  +V AD +  F V S M V+L
Sbjct: 171 IINPPQACILAIGASEDKLVPADNEKGFDVASMMSVTL 208

>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 428

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 148/382 (38%), Gaps = 16/382 (4%)
Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           E  +P +   + EG+IV W    GD +++ + +  V++DKA +++ +   G +  I+VPE
Sbjct: 4   EFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPE 63
Query: 120 GESAPVGAAIGILXXXXXXXXXXXXXXXXXXXXXXXSHXXXXXXXXXXXXXXXXXXXESA 179
           G  A VG  +  +                                              A
Sbjct: 64  GTVATVGQTL--ITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEA 121
Query: 180 PSGP-RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIXXXXXXXXXXXX 238
            +GP R+ +A P  +K  ++  VDI  V GTG  GR+  ED++                 
Sbjct: 122 EAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDID---AFLAGGAKPAPAAA 178
Query: 239 XXXXXXXXXXXXXXXXXXGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDAL 297
                               T    + ++ A++K M+ S  + P   +        L A 
Sbjct: 179 EEKAAPAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAH 238
Query: 298 YEKVK----PKGVTMTXX--XXXXXXXXXVQHPVVNASCKD-GKSFTYXXXXXXXXXXXX 350
            +K K     KG+ +T              ++PV+N S  D  +                
Sbjct: 239 RKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADT 298
Query: 351 XGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFD 410
             GL+ PV++ AD+  ++ L+Q+  EL EKAR  +L P E    + T++N+G  G   F 
Sbjct: 299 DRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFT 358
Query: 411 AILPPGQGAIMAVG--ASKPTV 430
            ++   + AI+ +G  A KP V
Sbjct: 359 PVINHPEVAILGIGRIAEKPIV 380

>pdb|2DNC|A Chain A, Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain From Human 2-Oxoacid Dehydrogenase Length = 98

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Query: 61  IFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEG 120
           I MP+LS TM EG IV W+K EG+ +S G+++  +E+DKA + ++   DGILA IVV EG
Sbjct: 10  ILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEG 69
Query: 121 -ESAPVGAAIGIL 132
            ++  +G+ IG++
Sbjct: 70  SKNIRLGSLIGLI 82

>pdb|1C4T|A Chain A, Catalytic Domain From Trimeric Dihydrolipoamide Succinyltransferase Length = 233

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Query: 322 QHPVVNASCKDGKSFTYXXXXXXXXXXXXXGGLITPVLQDADKLDLYLLSQKWKELVEKA 381
           ++P VNAS  DG    Y              GL+TPVL+D D L +  + +K KEL  K 
Sbjct: 76  RYPEVNASI-DGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKG 134
Query: 382 RSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASK 427
           R  +L   +   G FT++N G+FG      I+ P Q AI+ + A K
Sbjct: 135 RDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIK 180

>pdb|1Y8N|B Chain B, Crystal Structure Of The Pdk3-L2 Complex Length = 128

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           ++ +PALS TMT G +  W K  G+ LS+G+ +  +E+DKA +  E   +G LA I+VPE
Sbjct: 29  QVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPE 88
Query: 120 G-ESAPVGAAIGIL 132
           G    P+G  + I+
Sbjct: 89  GTRDVPLGTPLCII 102

>pdb|1FYC|A Chain A, Inner Lipoyl Domain From Human Pyruvate Dehydrogenase (Pdh) Complex, Nmr, 1 Structure Length = 106

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           ++ +PALS TMT G +  W K  G+ LS+G+ +  +E+DKA +  E   +G LA I+VPE
Sbjct: 11  QVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPE 70
Query: 120 G-ESAPVGAAIGIL 132
           G    P+G  + I+
Sbjct: 71  GTRDVPLGTPLCII 84

>pdb|3CRK|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex. Length = 87

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           ++ +PALS TMT G +  W K  G+ LS+G+ +  +E+D A +  E   +G LA I+VPE
Sbjct: 7   QVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPE 66
Query: 120 G-ESAPVGAAIGIL 132
           G    P+G  + I+
Sbjct: 67  GTRDVPLGTPLCII 80

>pdb|3L60|A Chain A, Crystal Structure Of Branched-Chain Alpha-Keto Acid Dehydrogenase Subunit E2 From Mycobacterium Tuberculosis Length = 250

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 41/76 (53%)
Query: 353 GLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAI 412
           GL+ PV+ DA   +   L+ +  EL+  AR   L P E    TFT+SN G  GVD    +
Sbjct: 115 GLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPV 174
Query: 413 LPPGQGAIMAVGASKP 428
           +   + AI+ +GA KP
Sbjct: 175 INHPEAAILGLGAIKP 190

>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic Domain (Residues 184-425) From Bacillus Stearothermophilus Length = 242

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 322 QHPVVNASCKD-GKSFTYXXXXXXXXXXXXXGGLITPVLQDADKLDLYLLSQKWKELVEK 380
           ++PV+N S  D  +                  GL+ PV++ AD+  ++ L+Q+  EL EK
Sbjct: 85  EYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEK 144
Query: 381 ARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVG--ASKPTV 430
           AR  +L P E    + T++N+G  G   F  ++   + AI+ +G  A KP V
Sbjct: 145 ARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIV 196

>pdb|2DNE|A Chain A, Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain Of Human 2-Oxoacid Dehydrogenase Length = 108

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 59  REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVP 118
           +++ +P+LS TM  G I  W K EGD +++G+ +  VE+DKA +  E+  +  +A I+V 
Sbjct: 8   QKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVA 67
Query: 119 EG-ESAPVGAAIGI 131
           EG    P+GA I I
Sbjct: 68  EGTRDVPIGAIICI 81

>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide Acyltransferase (E2b) Component In The Branched-Chain Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form Length = 262

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 76/173 (43%), Gaps = 7/173 (4%)
Query: 262 PFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKP----KGVTMTXX--XXXX 315
           P      A+ K M  +L +P F     +    L  L E++KP    +G+ ++        
Sbjct: 35  PVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKA 94
Query: 316 XXXXXVQHPVVNASC-KDGKSFTYXXXXXXXXXXXXXGGLITPVLQDADKLDLYLLSQKW 374
                +Q P++NAS  ++ ++ TY              GLI P +++     ++ ++ + 
Sbjct: 95  ASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATEL 154
Query: 375 KELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASK 427
             L +   + QL  ++   GTFTLSN+G  G      ++ P + AI A+G  K
Sbjct: 155 NRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIK 207

>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From Thermoplasma Acidophilum Length = 77

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 40/70 (57%)
Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           E  +P +   +TEG+IV W   EGD++ K + +V V +DK  + + +   G +  I+  E
Sbjct: 3   EFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYRE 62
Query: 120 GESAPVGAAI 129
           G+  PVG+ +
Sbjct: 63  GQVVPVGSTL 72

>pdb|3MAE|A Chain A, Crystal Structure Of Probable Dihydrolipamide Acetyltransferase From Listeria Monocytogenes 4b F2365 Length = 256

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 354 LITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAIL 413
           L  PV+++AD+  +  ++++  EL  KAR+ +L   +   GTFT+++ G FG  +   I+
Sbjct: 121 LYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGII 180
Query: 414 PPGQGAIMAVGA--SKPTVVAD 433
              Q AI+ V +   +P ++ D
Sbjct: 181 NHPQAAILQVESIVKRPVIIDD 202

>pdb|1GHJ|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2- Oxoglutarate Dehydrogenase Complex From Azotobacter Vineland Ii, Nmr, Minimized Average Structure Length = 79

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           +I  P    ++ +G + +W K  G+ + + E +V +E+DK  M+V    DG++A IV  E
Sbjct: 3   DIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNE 62
Query: 120 GESAPVGAAIGIL 132
           G++   G  +G L
Sbjct: 63  GDTVLSGELLGKL 75

>pdb|1PMR|A Chain A, Lipoyl Domain From The Dihydrolipoyl Succinyltransferase Component Of The 2-Oxoglutarate Dehydrogenase Multienzyme Complex Of Escherichia Coli, Nmr, 25 Structures Length = 80

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           +I +P L  ++ +  + +W K  GD + + E +V +E+DK  ++V    DGIL A++  E
Sbjct: 4   DILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDE 63
Query: 120 G 120
           G
Sbjct: 64  G 64

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	452
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	1e-79
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	4e-58
3b8k_A	239	PDCE2;, dihydrolipoyllysine-residue acetyltransfer	3e-57
3l60_A	250	Branched-chain alpha-keto acid dehydrogenase; stru	3e-43
2ii3_A	262	Lipoamide acyltransferase component of branched-C	1e-40
3mae_A	256	2-oxoisovalerate dehydrogenase E2 component, dihyd	2e-31
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	8e-31
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	2e-29
1dpb_A	243	Dihydrolipoyl-transacetylase; dihydrolipoamide ace	6e-29
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	7e-28
3rqc_A	224	Probable lipoamide acyltransferase; alpha beta fol	3e-27
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	3e-24
1q23_A	219	Chloramphenicol acetyltransferase; CAT I, trimer,	8e-23
3cla_A	213	Type III chloramphenicol acetyltransferase; transf	1e-19
1scz_A	233	E2, dihydrolipoamide succinyltransferase; COA-depe	2e-19
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	1e-15
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	4e-15
2i9d_A	217	Chloramphenicol acetyltransferase; structural geno	6e-14
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	8e-14
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	1e-13
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	1e-13
1w4i_A	62	Pyruvate dehydrogenase E2; transferase, peripheral	9e-12
2coo_A	70	Lipoamide acyltransferase component of branched- c	2e-10
2eq8_C	40	Pyruvate dehydrogenase complex, dihydrolipoamide a	3e-10
3rnm_E	58	Lipoamide acyltransferase component of branched-C	4e-10
2eq7_C	40	2-oxoglutarate dehydrogenase E2 component; protein	6e-10
1bal_A	51	Dihydrolipoamide succinyltransferase; glycolysis;	6e-09
2eq9_C	41	Pyruvate dehydrogenase complex, dihydrolipoamide a	2e-08
1w85_I	49	Dihydrolipoyllysine-residue acetyltransferase comp	3e-08
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	9e-08
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	2e-07
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	5e-07
2f60_K	64	Pyruvate dehydrogenase protein X component; protei	6e-06
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	1e-05
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	2e-05
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	2e-05
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	8e-05
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	8e-05
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	8e-05

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score =  252 bits (646), Expect = 1e-79
 Identities = 101/403 (25%), Positives = 170/403 (42%), Gaps = 25/403 (6%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           E  +P +   + EG+IV W    GD +++ + +  V++DKA +++ +   G +  I+VPE
Sbjct: 4   EFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPE 63

Query: 120 GESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHPVTSTPVPAVSPPEPKKVAESA 179
           G  A VG  +  L +                A         S      +       AE+ 
Sbjct: 64  GTVATVGQTLITL-DAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAE 122

Query: 180 PSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPA 239
               R+ +A P  +K  ++  VDI  V GTG  GR+  ED++         + A +   A
Sbjct: 123 AGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAAAEEKA 182

Query: 240 ALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIIT-------D 292
           A     PA           T    + ++ A++K M+ S          P +T        
Sbjct: 183 APAAAKPATTEGE---FPETREKMSGIRRAIAKAMVHSKHT------APHVTLMDEADVT 233

Query: 293 ALDALYEKVKP----KGV--TMTALLAKAAAMALVQHPVVNASC-KDGKSFTYNANINIA 345
            L A  +K K     KG+  T    + KA   AL ++PV+N S   + +        NI 
Sbjct: 234 KLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIG 293

Query: 346 VAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFG 405
           +A   + GL+ PV++ AD+  ++ L+Q+  EL EKAR  +L P E    + T++N+G  G
Sbjct: 294 IAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAG 353

Query: 406 VDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSL 448
              F  ++   + AI+ +G      +   DG       + +SL
Sbjct: 354 GQWFTPVINHPEVAILGIGRIAEKPIVR-DGEIVAAPMLALSL 395

>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens} Length = 239

 Score =  188 bits (479), Expect = 3e-57
 Identities = 63/211 (29%), Positives = 113/211 (53%), Gaps = 10/211 (4%)

Query: 245 APAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESL-SVPTFRVGYPIITDALDALYEKVKP 303
            P  AP        T +P + ++  +++ +++S  ++P + +   +    +  + +++  
Sbjct: 1   GPGMAPVPT--GVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNK 58

Query: 304 KG-----VTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPV 358
                  +++   + KA+A+A ++ P  N+S         N  ++++VAV+   GLITP+
Sbjct: 59  ILEGRSKISVNDFIIKASALACLKVPEANSSW-MDTVIRQNHVVDVSVAVSTPAGLITPI 117

Query: 359 LQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQG 418
           + +A    +  ++     L  KAR  +LQPHE+  GTFT+SNLGMFG+  F AI+ P Q 
Sbjct: 118 VFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQA 177

Query: 419 AIMAVGASKPT-VVADADGFFGVKSKMLVSL 448
            I+A+GAS+   V AD +  F V S M V+L
Sbjct: 178 CILAIGASEDKLVPADNEKGFDVASMMSVTL 208

>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} Length = 250

 Score =  151 bits (384), Expect = 3e-43
 Identities = 53/208 (25%), Positives = 90/208 (43%), Gaps = 7/208 (3%)

Query: 247 AAAPAAPLLPGSTVVPFTTMQAAVSKNMIESL-SVPTFRVGYPIITDALDALYEKVKPKG 305
            AA    +  G  V P   + A +++ M  S   +PT +    +I   L  L ++     
Sbjct: 3   LAAARGGVGAGPDVRPVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVSAA 62

Query: 306 V--TMTALLAKAAAMALVQHPVVNAS---CKDGKSFTYNANINIAVAVAINGGLITPVLQ 360
              T  AL  +   +AL  + ++N++     +G     +  +++    A   GL+ PV+ 
Sbjct: 63  PEITPFALTLRLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAATERGLLVPVVT 122

Query: 361 DADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAI 420
           DA   +   L+ +  EL+  AR   L P E    TFT+SN G  GVD    ++   + AI
Sbjct: 123 DAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVINHPEAAI 182

Query: 421 MAVGASKPTVVADADGFFGVKSKMLVSL 448
           + +GA KP  V    G    +  M ++ 
Sbjct: 183 LGLGAIKPRPVVV-GGEVVARPTMTLTC 209

>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A* Length = 262

 Score =  145 bits (368), Expect = 1e-40
 Identities = 59/229 (25%), Positives = 103/229 (44%), Gaps = 8/229 (3%)

Query: 227 APSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESLSVPTFRVG 286
             ++ + P   P     P P + P   +       P      A+ K M  +L +P F   
Sbjct: 1   GHAEIMPPPPKPKDRTIPIPISKPPVFIGKD-RTEPVKGFHKAMVKTMSAALKIPHFGYC 59

Query: 287 YPIITDALDALYEKVKP----KGV--TMTALLAKAAAMALVQHPVVNASC-KDGKSFTYN 339
             +    L  L E++KP    +G+  +      KAA++ L+Q P++NAS  ++ ++ TY 
Sbjct: 60  DEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYK 119

Query: 340 ANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLS 399
           A+ NI +A+    GLI P +++     ++ ++ +   L +   + QL  ++   GTFTLS
Sbjct: 120 ASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLS 179

Query: 400 NLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSL 448
           N+G  G      ++ P + AI A+G  K     +  G       M VS 
Sbjct: 180 NIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSW 228

>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes} Length = 256

 Score =  120 bits (302), Expect = 2e-31
 Identities = 57/224 (25%), Positives = 97/224 (43%), Gaps = 26/224 (11%)

Query: 241 LPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIIT-------DA 293
           +   A    P      G   +P   ++ A++K+M  S          P            
Sbjct: 1   MSLKAAMPTPPVRSAAGDKEIPINGVRKAIAKHMSVSKQE------IPHAWMMVEVDATG 54

Query: 294 LDALYEKVKPK-----GV--TMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAV 346
           L      VK       G   T  A   KA A AL + P +N++   G     +ANINI++
Sbjct: 55  LVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLNSTW-AGDKIIEHANINISI 113

Query: 347 AVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGV 406
           A+A    L  PV+++AD+  +  ++++  EL  KAR+ +L   +   GTFT+++ G FG 
Sbjct: 114 AIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGS 173

Query: 407 DRFDAILPPGQGAIMAVGA--SKPTVVADADGFFGVKSKMLVSL 448
            +   I+   Q AI+ V +   +P ++   D    V+  + + L
Sbjct: 174 VQSMGIINHPQAAILQVESIVKRPVII---DDMIAVRDMVNLCL 214

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Length = 128

 Score =  114 bits (287), Expect = 8e-31
 Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 1/100 (1%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           ++ +PALS TMT G +  W K  G+ LS+G+ +  +E+DKA +  E   +G LA I+VPE
Sbjct: 29  QVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPE 88

Query: 120 G-ESAPVGAAIGILAETEAEVAQAKAKAASAGAAAPASHP 158
           G    P+G  + I+ E EA+++       +         P
Sbjct: 89  GTRDVPLGTPLCIIVEKEADISAFADYRPTEVTDLKPQVP 128

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Length = 108

 Score =  109 bits (275), Expect = 2e-29
 Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 2/99 (2%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           ++ +P+LS TM  G I  W K EGD +++G+ +  VE+DKA +  E+  +  +A I+V E
Sbjct: 9   KVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAE 68

Query: 120 G-ESAPVGAAIGILAETEAEVAQAKA-KAASAGAAAPAS 156
           G    P+GA I I      ++   K     S+ A+ P+S
Sbjct: 69  GTRDVPIGAIICITVGKPEDIEAFKNYTLDSSAASGPSS 107

>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A Length = 243

 Score =  113 bits (284), Expect = 6e-29
 Identities = 62/206 (30%), Positives = 92/206 (44%), Gaps = 25/206 (12%)

Query: 259 TVVPFTTMQAAVSKNMIES-LSVP--------------TFRVGYPIITDALDALYEKVKP 303
             VP T +    + N+  S L+VP               FRV       A  A+ EK   
Sbjct: 16  EEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRV-------AQKAVAEKAGV 68

Query: 304 KGVTMTALLAKAAAMALVQHPVVNASC-KDGKSFTYNANINIAVAVAINGGLITPVLQDA 362
           K +T+  LL KA A  L + P  N+S    G++      ++I  AV    GL+ PV+++ 
Sbjct: 69  K-LTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNV 127

Query: 363 DKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMA 422
           D+  L  L+ +  EL EKARSK+L         FT+S+LG  G   F  I+   + AI+ 
Sbjct: 128 DQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILG 187

Query: 423 VGASKPTVVADADGFFGVKSKMLVSL 448
           V  +    V D    F  +  + +SL
Sbjct: 188 VSKASMQPVWD-GKAFQPRLMLPLSL 212

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score =  105 bits (264), Expect = 7e-28
 Identities = 35/89 (39%), Positives = 57/89 (64%), Gaps = 1/89 (1%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           +I MP+LS TM EG IV W+K EG+ +S G+++  +E+DKA + ++   DGILA IVV E
Sbjct: 9   KILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEE 68

Query: 120 G-ESAPVGAAIGILAETEAEVAQAKAKAA 147
           G ++  +G+ IG++ E   +       ++
Sbjct: 69  GSKNIRLGSLIGLIVEEGEDWKHVSGPSS 97

>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728} Length = 224

 Score =  107 bits (270), Expect = 3e-27
 Identities = 39/177 (22%), Positives = 74/177 (41%), Gaps = 16/177 (9%)

Query: 261 VPFTTMQAAVSKNMIESLSVPTFRVGYPIIT-------DALDALYEKVKPKGV--TMTAL 311
           +    ++  +   M ++      +   P  T        ++ ++ +  K +    T+T  
Sbjct: 9   LEMHGLRRIIFDKMTKA------KQIMPHFTVMEEVDVTSMVSILDSAKARNRKVTVTGF 62

Query: 312 LAKAAAMALVQHPVVNASCK-DGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLL 370
           LA+     L Q+P +NA      + +      NI +AV    GL   V++DAD+  +  +
Sbjct: 63  LARIVPSILKQYPYLNAIYDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEI 122

Query: 371 SQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASK 427
           S +  +   +AR  +LQ  E    TFT++N+G  G      I+   + AI+ V    
Sbjct: 123 SAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGIMSTPIINYPEVAILGVHRIL 179

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Length = 87

 Score = 95.2 bits (237), Expect = 3e-24
 Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 1/81 (1%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           ++ +PALS TMT G +  W K  G+ LS+G+ +  +E+D A +  E   +G LA I+VPE
Sbjct: 7   QVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPE 66

Query: 120 G-ESAPVGAAIGILAETEAEV 139
           G    P+G  + I+ E EA++
Sbjct: 67  GTRDVPLGTPLCIIVEKEADI 87

>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A* Length = 219

 Score = 95.2 bits (236), Expect = 8e-23
 Identities = 21/152 (13%), Positives = 43/152 (28%), Gaps = 8/152 (5%)

Query: 277 SLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSF 336
           S++  T+     +    + A  + VK              A  +  HP    + KDG+  
Sbjct: 27  SVAQCTYNQTVQL---DITAFLKTVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGELV 83

Query: 337 TYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKAR-SKQLQPHEYNSGT 395
            ++ +++    V          L      D       + + V     +    P  +    
Sbjct: 84  IWD-SVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENM 142

Query: 396 FTLSNLGMFGVDRFDAILPPGQGA---IMAVG 424
           F +S         FD  +         +  +G
Sbjct: 143 FFVSANPWVSFTSFDLNVANMDNFFAPVFTMG 174

>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A* Length = 213

 Score = 86.3 bits (213), Expect = 1e-19
 Identities = 18/149 (12%), Positives = 43/149 (28%), Gaps = 6/149 (4%)

Query: 277 SLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSF 336
                 F +   I    +  L + +         ++    A A+ Q   +  + KD +  
Sbjct: 22  HRLPCGFSLTSKI---DITTLKKSLDDSAYKFYPVMIYLIAQAVNQFDELRMAIKDDELI 78

Query: 337 TYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKA-RSKQLQPHEYN-SG 394
            ++ +++    V          L      D+      +  ++E+     +L P       
Sbjct: 79  VWD-SVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPEN 137

Query: 395 TFTLSNLGMFGVDRFDAILPPGQGAIMAV 423
              +S L     D F+  +         +
Sbjct: 138 HLNISALPWVNFDSFNLNVANFTDYFAPI 166

>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A Length = 233

 Score = 86.1 bits (214), Expect = 2e-19
 Identities = 42/109 (38%), Positives = 62/109 (56%), Gaps = 1/109 (0%)

Query: 313 AKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQ 372
            KA   AL ++P VNAS  DG    Y+   ++++AV+   GL+TPVL+D D L +  + +
Sbjct: 67  VKAVVEALKRYPEVNASI-DGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEK 125

Query: 373 KWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIM 421
           K KEL  K R  +L   +   G FT++N G+FG      I+ P Q AI+
Sbjct: 126 KIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAIL 174

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Length = 93

 Score = 71.2 bits (175), Expect = 1e-15
 Identities = 18/89 (20%), Positives = 41/89 (46%)

Query: 56  SKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAI 115
            ++ +  +  +   + E  +  W   EGD +S+ +S+  V+SDKA + + + YDG++  +
Sbjct: 2   GQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKL 61

Query: 116 VVPEGESAPVGAAIGILAETEAEVAQAKA 144
                + A VG  +  +     +  +   
Sbjct: 62  YYNLDDIAYVGKPLVDIETEALKDLEHHH 90

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Length = 77

 Score = 69.2 bits (170), Expect = 4e-15
 Identities = 23/72 (31%), Positives = 41/72 (56%)

Query: 58  IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVV 117
           + E  +P +   +TEG+IV W   EGD++ K + +V V +DK  + + +   G +  I+ 
Sbjct: 1   MYEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILY 60

Query: 118 PEGESAPVGAAI 129
            EG+  PVG+ +
Sbjct: 61  REGQVVPVGSTL 72

>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron} Length = 217

 Score = 69.8 bits (170), Expect = 6e-14
 Identities = 16/147 (10%), Positives = 38/147 (25%), Gaps = 12/147 (8%)

Query: 290 ITDALDA--LYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVA 347
           IT  ++     ++ K  G +       A   A  + P                 I++   
Sbjct: 32  ITSEVECGGARQRAKAAGQSFFLHYLYAVLRAANEIPEFRYRIDPDGRVVLYDTIDMLSP 91

Query: 348 VAINGGLITPVLQDADKLDLYLLSQKWKELVEK-------ARSKQLQPHEYNSGTFTLSN 400
           + I         +     D     Q+ + +++          ++  +  + + G   LS 
Sbjct: 92  IKIKENGKFFTTRFPYHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVADGDYGLILLSA 151

Query: 401 LGMFGVDRFDAILPPGQGA---IMAVG 424
                            G    ++  G
Sbjct: 152 TPDLYFTSITGTQEKRSGNNYPLLNAG 178

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Length = 79

 Score = 65.3 bits (160), Expect = 8e-14
 Identities = 24/75 (32%), Positives = 42/75 (56%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           +I  P    ++ +G + +W K  G+ + + E +V +E+DK  M+V    DG++A IV  E
Sbjct: 3   DIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNE 62

Query: 120 GESAPVGAAIGILAE 134
           G++   G  +G L E
Sbjct: 63  GDTVLSGELLGKLTE 77

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Length = 1113

 Score = 72.2 bits (178), Expect = 1e-13
 Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 33/176 (18%)

Query: 274 MIESLSVPT---FRVGYP---------IITDALDALYEKVKPKGVTMTALLAKAAAMALV 321
           M  SL VPT    R   P         +I + L    ++ +   ++ T LL  A   A+ 
Sbjct: 2   MNASLEVPTATSVR-AIPAKLMIDNRVVINNHL----KRTRGGKISFTHLLGYAIVQAVK 56

Query: 322 QHPVVNAS--CKDGK-SFTYNANINIAVAVAINGG-----LITPVLQDADKLDLYLLSQK 373
           + P +N      DGK +    A+ N+ +A+ + G      L+   ++  + +        
Sbjct: 57  KFPNMNRHFAVVDGKPTAITPAHTNLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAA 116

Query: 374 WKELVEKARSKQLQPHEYNSGTFTLSNLGMFG----VDRFDAILPPGQGAIMAVGA 425
           ++++V +AR  +L   +++  T +L+N G  G    V R    L  GQGAI+  GA
Sbjct: 117 YEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSVPR----LMQGQGAIIGAGA 168

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80

 Score = 65.0 bits (159), Expect = 1e-13
 Identities = 23/75 (30%), Positives = 41/75 (54%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           +I +P L  ++ +  + +W K  GD + + E +V +E+DK  ++V    DGIL A++  E
Sbjct: 4   DILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDE 63

Query: 120 GESAPVGAAIGILAE 134
           G +      +G L E
Sbjct: 64  GTTVTSRQILGRLRE 78

>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A Length = 62

 Score = 59.3 bits (144), Expect = 9e-12
 Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 9/71 (12%)

Query: 182 GPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPSAAPAAL 241
           G R+  A P A++L K+  +D++ V GTGP G IT EDV++          A   A A  
Sbjct: 1   GSREVAAMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRY---------AEETAKATA 51

Query: 242 PKPAPAAAPAA 252
           P PAP A   A
Sbjct: 52  PAPAPKAVEKA 62

>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens} Length = 70

 Score = 55.9 bits (135), Expect = 2e-10
 Identities = 18/65 (27%), Positives = 31/65 (47%)

Query: 176 AESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVAPS 235
           +       RKT+ATP  ++L  ++ + ++ VVG+G  GRI  ED+           + PS
Sbjct: 6   SGHQEIKGRKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTGAILPPS 65

Query: 236 AAPAA 240
              + 
Sbjct: 66  GPSSG 70

>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus} Length = 40

 Score = 54.0 bits (131), Expect = 3e-10
 Identities = 18/39 (46%), Positives = 26/39 (66%)

Query: 188 ATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGI 226
           A P  ++L ++  VD+  + GTG  GRIT EDV +AAG+
Sbjct: 2   AAPSIRRLARELGVDLTRLRGTGLAGRITEEDVRRAAGL 40

>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} PDB: 1zwv_A Length = 58

 Score = 54.2 bits (131), Expect = 4e-10
 Identities = 16/44 (36%), Positives = 25/44 (56%)

Query: 179 APSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEK 222
                RKT+ATP  + L  ++ + ++ VVG+G  GRI  ED+  
Sbjct: 1   GEIKGRKTLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILN 44

>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus} Length = 40

 Score = 53.4 bits (129), Expect = 6e-10
 Identities = 15/37 (40%), Positives = 22/37 (59%)

Query: 187 VATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKA 223
           +A P A++L+++  V    V GTG  GRI  EDV + 
Sbjct: 1   LAMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRH 37

>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A Length = 51

 Score = 50.8 bits (122), Expect = 6e-09
 Identities = 16/46 (34%), Positives = 27/46 (58%)

Query: 178 SAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKA 223
           ++         +P  ++LL +H +D +++ GTG  GR+T EDVEK 
Sbjct: 2   ASLEEQNNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKH 47

>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus} Length = 41

 Score = 49.4 bits (119), Expect = 2e-08
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 187 VATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAA 224
           +A P A+KL ++  + I  V G+GP GR+  EDV   A
Sbjct: 2   LAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAYA 39

>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C* Length = 49

 Score = 48.7 bits (117), Expect = 3e-08
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 184 RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEK 222
           R+ +A P  +K  ++  VDI  V GTG  GR+  ED++ 
Sbjct: 5   RRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDA 43

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Length = 84

 Score = 48.5 bits (116), Expect = 9e-08
 Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 3/79 (3%)

Query: 66  LSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPV 125
           L S    GK+  +   +G  +  G S   +E  K  M +     G +   +   G     
Sbjct: 8   LRSPSA-GKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIKRPGAVLEA 65

Query: 126 GAAIGILAETE-AEVAQAK 143
           G  +  L   +        
Sbjct: 66  GCVVARLELDDLEHHHHHH 84

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} Length = 85

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 21/73 (28%), Positives = 36/73 (49%)

Query: 73  GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132
            ++   +   GD ++  +S++ VE DKA M+V   + G++  + V  G+    G+ I I 
Sbjct: 11  VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIF 70

Query: 133 AETEAEVAQAKAK 145
               A  A A AK
Sbjct: 71  EVEGAAPAAAPAK 83

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 46.7 bits (111), Expect = 5e-07
 Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 2/68 (2%)

Query: 66  LSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPV 125
           L S    GK+  +   +G  +  G S   +E  K  M +     G +   +   G     
Sbjct: 20  LRSPSA-GKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIKRPGAVLEA 77

Query: 126 GAAIGILA 133
           G  +  L 
Sbjct: 78  GCVVARLE 85

>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K Length = 64

 Score = 42.8 bits (100), Expect = 6e-06
 Identities = 14/54 (25%), Positives = 25/54 (46%)

Query: 180 PSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGIAPSKSVA 233
             G  +   +P A+ +L++H +D +    TGP G  T ED  K   +  +  + 
Sbjct: 4   IPGTLRFRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQLKQTGKIL 57

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Length = 79

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 81  SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA 137
             GD++   + +VV+ES KA M+V +   G++ ++ V  G+    G AI  L     
Sbjct: 21  KTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAAG 77

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 81  SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAE 138
             GD ++  +S++ VE DKA M+V   + G++  + V  G+    G+ I I  E E  
Sbjct: 23  KVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIF-EVEGA 79

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 Length = 81

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 81  SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEAE 138
           + GD ++  ++++ +E+DKA MDV     G++  + V  G+    G  I ++ E E  
Sbjct: 24  NVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVV-EAEGT 80

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Length = 1236

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 62   FMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGE 121
                L S  T G+    + + GD +  G+ V+++E+ K +M V     G +  I+   G+
Sbjct: 1166 DAELLYSEYT-GRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGD 1224

Query: 122  SAPVGAAIGIL 132
                G  + ++
Sbjct: 1225 MVEAGDLVAVI 1235

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} Length = 99

 Score = 40.5 bits (95), Expect = 8e-05
 Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 65  ALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAP 124
              + MT G I       GD +  G+S++V+ + K +  +++  DG +  +   EG  A 
Sbjct: 16  GPLAPMT-GTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQAN 74

Query: 125 VGAAIGILAETEAEVAQAKAKAASA 149
               +    E E++  ++++  +S 
Sbjct: 75  RHTPLVEFEEEESDKRESESGPSSG 99

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Length = 72

 Score = 39.9 bits (94), Expect = 8e-05
 Identities = 15/64 (23%), Positives = 29/64 (45%)

Query: 73  GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132
           G +       GD + KG+ V ++ES K ++ +     GI+  +   EG+    G  +  L
Sbjct: 8   GNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLEL 67

Query: 133 AETE 136
           + + 
Sbjct: 68  SNST 71

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	452
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	100.0
3l60_A	250	Branched-chain alpha-keto acid dehydrogenase; stru	100.0
3mae_A	256	2-oxoisovalerate dehydrogenase E2 component, dihyd	100.0
2ii3_A	262	Lipoamide acyltransferase component of branched-C	100.0
1scz_A	233	E2, dihydrolipoamide succinyltransferase; COA-depe	100.0
1dpb_A	243	Dihydrolipoyl-transacetylase; dihydrolipoamide ace	100.0
3b8k_A	239	PDCE2;, dihydrolipoyllysine-residue acetyltransfer	100.0
3rqc_A	224	Probable lipoamide acyltransferase; alpha beta fol	100.0
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	100.0
1q23_A	219	Chloramphenicol acetyltransferase; CAT I, trimer,	100.0
3cla_A	213	Type III chloramphenicol acetyltransferase; transf	100.0
2i9d_A	217	Chloramphenicol acetyltransferase; structural geno	99.98
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	99.97
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	99.8
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	99.78
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	99.78
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	99.77
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	99.75
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	99.71
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	99.66
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	99.66
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	99.65
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	99.61
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	99.59
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	99.42
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	99.4
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	99.38
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	99.34
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	99.33
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	99.28
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	99.27
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	99.25
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	99.21
2eq9_C	41	Pyruvate dehydrogenase complex, dihydrolipoamide a	99.21
3rnm_E	58	Lipoamide acyltransferase component of branched-C	99.19
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	99.18
2eq8_C	40	Pyruvate dehydrogenase complex, dihydrolipoamide a	99.17
2eq7_C	40	2-oxoglutarate dehydrogenase E2 component; protein	99.16
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	99.11
1w85_I	49	Dihydrolipoyllysine-residue acetyltransferase comp	99.1
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	99.1
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	99.09
1bal_A	51	Dihydrolipoamide succinyltransferase; glycolysis;	99.08
2f60_K	64	Pyruvate dehydrogenase protein X component; protei	98.99
1w4i_A	62	Pyruvate dehydrogenase E2; transferase, peripheral	98.97
2coo_A	70	Lipoamide acyltransferase component of branched- c	98.97
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	98.81
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	98.79
1zko_A	136	Glycine cleavage system H protein; TM0212, structu	98.79
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	98.75
1onl_A	128	Glycine cleavage system H protein; hybrid barrel-s	98.35
1hpc_A	131	H protein of the glycine cleavage system; transit	98.32
3a7l_A	128	H-protein, glycine cleavage system H protein; lipo	98.29
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	97.91
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	97.9
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	97.89
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	97.83
3klr_A	125	Glycine cleavage system H protein; antiparallel be	97.69
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	97.59
3mxu_A	143	Glycine cleavage system H protein; seattle structu	97.54
3tzu_A	137	GCVH, glycine cleavage system H protein 1; ssgcid,	97.5
3hgb_A	155	Glycine cleavage system H protein; ssgcid, niaid,	97.19
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	97.06
3na6_A	331	Succinylglutamate desuccinylase/aspartoacylase; st	96.68
3cdx_A	354	Succinylglutamatedesuccinylase/aspartoacylase; str	96.55
3fmc_A	368	Putative succinylglutamate desuccinylase / aspart;	96.41
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	96.33
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	95.74
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	95.64
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	95.62
1f3z_A	161	EIIA-GLC, glucose-specific phosphocarrier; phospho	95.23
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	95.12
2qj8_A	332	MLR6093 protein; structural genomics, joint center	94.88
2gpr_A	154	Glucose-permease IIA component; phosphotransferase	94.68
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	94.52
1ax3_A	162	Iiaglc, glucose permease IIA domain; phosphotransf	94.41
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	94.24
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	93.53
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	93.38
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	93.08
2xha_A	193	NUSG, transcription antitermination protein NUSG;	92.99
3d4r_A	169	Domain of unknown function from the PFAM-B_34464;	92.61
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	92.59
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	92.46
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	91.2
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	91.07
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	90.87
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	90.3
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	90.28
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	90.2
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	90.17
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	90.15
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	90.06
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	89.96
2xhc_A	352	Transcription antitermination protein NUSG; 2.45A	89.62
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	89.41
2auk_A	190	DNA-directed RNA polymerase beta' chain; sandwich-	89.38
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	87.14
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	87.14
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	86.92
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	85.07
2xha_A	193	NUSG, transcription antitermination protein NUSG;	84.29
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	83.57
3our_B	183	EIIA, phosphotransferase system IIA component; exh	83.1

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A

Probab=100.00  E-value=4.4e-84  Score=673.38  Aligned_cols=387  Identities=27%  Similarity=0.378  Sum_probs=40.2

Q ss_pred             eEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchh
Q 012955           58 IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA  137 (452)
Q Consensus        58 ~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~  137 (452)
                      .++|+||+||++|+||+|++|+|++||.|++||+||+||+||++++|+||++|+|.++++++|+.|.+|++|+.|+++++
T Consensus         2 ~~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~   81 (428)
T 3dva_I            2 AFEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPGY   81 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CeeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecCCc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999987655


Q ss_pred             hHHHHHhhhhccCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHhhcCCCccccccCCCCcccc
Q 012955          138 EVAQAKAKAASAGAAAPASH-PVTSTPVPAVSPPEPKKVAESAPSGPRKTVATPYAKKLLKQHKVDINSVVGTGPFGRIT  216 (452)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aRklA~e~gIdL~~V~gtG~~GrI~  216 (452)
                      +...............+... .+.+.+...+.+...  ........++++++||+|||||+||||||++|.|||++|||+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~asP~~R~lA~e~gvdl~~v~gtG~~GrI~  159 (428)
T 3dva_I           82 ENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAP--AAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVL  159 (428)
T ss_dssp             ------------------------------------------------CCCCCHHHHHHHHHTTCCGGGSCCCSTTSCCC
T ss_pred             cccccccccccccccCCCcccCCccccccCCCcccc--ccccccccccccccCHHHHHHHHHcCCCHHHCCCCCCCCcee
Confidence            43221100000000000000 000000000000000  000011123468999999999999999999999999999999


Q ss_pred             hhhHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccchhhHHHHHHhhhc-CCccEEEEEEEEechHHH
Q 012955          217 PEDVEKAAGIAPSKSVAPSAAPAALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALD  295 (452)
Q Consensus       217 ~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l~  295 (452)
                      ++||++|+.........+ . +.+. ...+............+++||++|||.||++|.+| +++||||++.+||+++|+
T Consensus       160 k~DV~~~~~~~~~~~~~~-~-~~~~-~~~~~~~~~~~~~~~~~~~p~s~~Rk~ia~~m~~S~~~~P~~~~~~evDvt~l~  236 (428)
T 3dva_I          160 KEDIDAFLAGGAKPAPAA-A-EEKA-APAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLV  236 (428)
T ss_dssp             TTTTTTTSCC----------------------------------------------------------------------
T ss_pred             HHHHHHHhhccccccccc-c-cccc-ccCCCCccccccCCccccccCcHHHHHHHHHHHHhcccCCeEEEEEEEeHHHHH
Confidence            999999986432110000 0 0000 00000000000111256799999999999999999 799999999999999999


Q ss_pred             HHHHHhCCC------CCCHHHHHHHHHHHHHhhCCcCcceeeCC-CeEEEcCCccEEEEEecCCCeEeeeecCCCCCCHH
Q 012955          296 ALYEKVKPK------GVTMTALLAKAAAMALVQHPVVNASCKDG-KSFTYNANINIAVAVAINGGLITPVLQDADKLDLY  368 (452)
Q Consensus       296 ~lr~~~~~~------~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~-~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~  368 (452)
                      ++|+++++.      ++|+++||+||+++||++||+||++|+++ +.|++|+++|||+||++++||++|||+|++++||.
T Consensus       237 ~~rk~~~~~~~~~g~kls~~~~~ikAva~Al~~~P~~Na~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~  316 (428)
T 3dva_I          237 AHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIF  316 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhhhhHhhcCCCcCHHHHHHHHHHHHHHhCHHhhheEecCCCeEEEcCccCeEEEEEcCCceEEeeeccCCCCCHH
Confidence            999999841      69999999999999999999999999752 68999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCCCceEEEEecCceeEEEEcCCCcEEEEeEEEEEE
Q 012955          369 LLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSL  448 (452)
Q Consensus       369 eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltl  448 (452)
                      +|++++++|.+|+|+|+|.++|++||||||||+|+||+++|+||||+||+|||++|+++++||+. ||++++|++|+|+|
T Consensus       317 eia~~~~~l~~~ar~gkL~~~e~~ggtftISnlG~~G~~~ftpIin~pq~aIl~vG~i~~~pv~~-~g~i~~r~~m~lsl  395 (428)
T 3dva_I          317 ALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVR-DGEIVAAPMLALSL  395 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccceEeecCCCCceEEEccccEEEEEEE-CCEEEEeeeEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999995 89999999999999


Q ss_pred             Ee
Q 012955          449 IS  450 (452)
Q Consensus       449 t~  450 (452)
                      +|
T Consensus       396 s~  397 (428)
T 3dva_I          396 SF  397 (428)
T ss_dssp             --
T ss_pred             Ee
Confidence            97

>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0

Probab=100.00  E-value=7.6e-52  Score=402.25  Aligned_cols=188  Identities=27%  Similarity=0.399  Sum_probs=182.6

Q ss_pred             ccchhhHHHHHHhhhc-CCccEEEEEEEEechHHHHHHHHhCCC--CCCHHHHHHHHHHHHHhhCCcCcceeeC---CCe
Q 012955          262 PFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKPK--GVTMTALLAKAAAMALVQHPVVNASCKD---GKS  335 (452)
Q Consensus       262 p~s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l~~lr~~~~~~--~vs~t~~l~kA~a~AL~~~P~~Ns~~~~---~~~  335 (452)
                      |++++||+||++|.+| +++||||++.+||+++|.++|+++|+.  ++|+++||+||+++||++||+||++|++   +++
T Consensus        18 pls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~k~~~~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~~   97 (250)
T 3l60_A           18 PVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVSAAPEITPFALTLRLLVIALKHNVILNSTWVDSGEGPQ   97 (250)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHTTTCTTCCHHHHHHHHHHHHHHHCGGGSEEEECTTTSCE
T ss_pred             CCcHHHHHHHHHHHHHhhcCCeEEEEEEEEHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCHHhhEEEeccCCCCe
Confidence            9999999999999999 699999999999999999999999865  7899999999999999999999999975   358


Q ss_pred             EEEcCCccEEEEEecCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCC
Q 012955          336 FTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPP  415 (452)
Q Consensus       336 i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~p  415 (452)
                      |++++++|||+||++++||++|||+|++++|+.||++++++|++|+|+|+|.++|++||||||||+|+||+++|+|||||
T Consensus        98 i~~~~~vnigvAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~~~ftpIinp  177 (250)
T 3l60_A           98 VHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVINH  177 (250)
T ss_dssp             EEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCGGGGSCCSEEEECGGGGTCSSCCCCCCT
T ss_pred             EEEcCceeEEEEEEcCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCChhhcCCCEEEEEcCCCCCcceeEeeeCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955          416 GQGAIMAVGASKPTVVADADGFFGVKSKMLVSLIS  450 (452)
Q Consensus       416 pq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~  450 (452)
                      ||+|||++|+++++||++ ||++++|++|+|||||
T Consensus       178 pq~aIL~vG~i~~~pv~~-~g~i~~r~~m~lsLs~  211 (250)
T 3l60_A          178 PEAAILGLGAIKPRPVVV-GGEVVARPTMTLTCVF  211 (250)
T ss_dssp             TCSEEEEECCCEEEEEEE-TTEEEEEEEEEEEEEE
T ss_pred             CCceEEEecceEEEeEEE-CCEEEEEEEeEEEEEe
Confidence            999999999999999996 7999999999999998

>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}

Probab=100.00  E-value=6.5e-52  Score=404.01  Aligned_cols=192  Identities=28%  Similarity=0.376  Sum_probs=185.2

Q ss_pred             CCceeccchhhHHHHHHhhhc-CCccEEEEEEEEechHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHhhCCcCcc
Q 012955          257 GSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNA  328 (452)
Q Consensus       257 ~~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l~~lr~~~~~-------~~vs~t~~l~kA~a~AL~~~P~~Ns  328 (452)
                      +.+++|++++||+||++|.+| +++||||++.+||+++|.++|+++|+       .++|+++||+||++.||++||+||+
T Consensus        17 ~~~~~pl~~~rk~ia~~m~~S~~~iP~~t~~~evDvt~l~~~r~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~Na   96 (256)
T 3mae_A           17 GDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLNS   96 (256)
T ss_dssp             SCEEEECCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCTTTSE
T ss_pred             CceEEeCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhCHHhhh
Confidence            467899999999999999999 69999999999999999999999873       3899999999999999999999999


Q ss_pred             eeeCCCeEEEcCCccEEEEEecCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCC
Q 012955          329 SCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDR  408 (452)
Q Consensus       329 ~~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~  408 (452)
                      +|+ ++.++++++||||+||++++||++|||+|+|++|+.||++++++|++|+|+|+|.++|++||||||||+|+||+++
T Consensus        97 ~~~-~~~i~~~~~vnigiAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~~~  175 (256)
T 3mae_A           97 TWA-GDKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQ  175 (256)
T ss_dssp             EEE-TTEEEECSSCCEEECCCCTTSCCCCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCHHHHSCCSEEEECGGGGTCSE
T ss_pred             EEe-cCEEEEcCcEEEEeEEEcCCceEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCCCchhcCCCEEEEecCCCCCccc
Confidence            997 4699999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEeecCCCceEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955          409 FDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLIS  450 (452)
Q Consensus       409 f~pii~ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~  450 (452)
                      |+|||||||+|||++|+++++||++ ||++++|++|+|||||
T Consensus       176 ftpIInppq~aIL~vG~i~~~pv~~-~g~i~~r~~m~lsLs~  216 (256)
T 3mae_A          176 SMGIINHPQAAILQVESIVKRPVII-DDMIAVRDMVNLCLSI  216 (256)
T ss_dssp             EECCCCTTSSEEEEEEEEEEEEEEE-TTEEEEEEEEEEEEEE
T ss_pred             eEcccCCCCceEEEecccEEEEEEE-CCEEEEeEEEEEEEEE
Confidence            9999999999999999999999996 7999999999999998

>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*

Probab=100.00  E-value=3.8e-51  Score=400.17  Aligned_cols=194  Identities=27%  Similarity=0.399  Sum_probs=186.1

Q ss_pred             CCceeccchhhHHHHHHhhhcCCccEEEEEEEEechHHHHHHHHhCC------CCCCHHHHHHHHHHHHHhhCCcCccee
Q 012955          257 GSTVVPFTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKP------KGVTMTALLAKAAAMALVQHPVVNASC  330 (452)
Q Consensus       257 ~~~~~p~s~~rk~ia~~m~~S~~iP~~~~~~eid~~~l~~lr~~~~~------~~vs~t~~l~kA~a~AL~~~P~~Ns~~  330 (452)
                      .++++|++++||+||++|.+|+++||||++.+||+++|.++|+++|+      .++|+++||+||++.||++||+||++|
T Consensus        30 ~~~~~p~~~~rk~ia~~m~~S~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~g~kls~~~~~ikAva~Al~~~P~~Na~~  109 (262)
T 2ii3_A           30 KDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASV  109 (262)
T ss_dssp             CCEEEECCGGGHHHHHHHHHGGGSCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHCGGGSEEE
T ss_pred             CcceecCCHHHHHHHHHHHHhhhCCeEEEEEEEEhHHHHHHHHHHhhhhhhccCCccHHHHHHHHHHHHHHhChHhhEEE
Confidence            45679999999999999999988999999999999999999999874      489999999999999999999999999


Q ss_pred             eCC-CeEEEcCCccEEEEEecCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCe
Q 012955          331 KDG-KSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRF  409 (452)
Q Consensus       331 ~~~-~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f  409 (452)
                      +++ +.+++++++|||+||++++||++|||+|++++|+.+|+++++++++|+|+|+|.++|++||||||||+|+||+++|
T Consensus       110 ~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggTftISNlG~~G~~~~  189 (262)
T 2ii3_A          110 DENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYA  189 (262)
T ss_dssp             CTTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCHHHHSCCCEEEECGGGTCCSCE
T ss_pred             eCCCCEEEEecccceEEEEEcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHHHhCCCCcccCCCCEEEEEeCCCCCccce
Confidence            754 5899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCceEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955          410 DAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLIS  450 (452)
Q Consensus       410 ~pii~ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~  450 (452)
                      +|||||||+|||++|+++++||+++||+|++|++|+|+|+|
T Consensus       190 tPIinppq~aIL~vG~~~~~pv~~~~g~i~~r~~m~lsls~  230 (262)
T 2ii3_A          190 KPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSA  230 (262)
T ss_dssp             ECCCCTTCCEEEEECCCEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred             ECccCCCcceEEEcCccEEEEEEecCCcEEEEeeeEEEEEE
Confidence            99999999999999999999999657899999999999998

>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A

Probab=100.00  E-value=3.5e-51  Score=394.42  Aligned_cols=191  Identities=28%  Similarity=0.402  Sum_probs=184.0

Q ss_pred             CceeccchhhHHHHHHhhhc-CCccEEEEEEEEechHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHhhCCcCcce
Q 012955          258 STVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNAS  329 (452)
Q Consensus       258 ~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l~~lr~~~~~-------~~vs~t~~l~kA~a~AL~~~P~~Ns~  329 (452)
                      .+++|++++||+||++|.+| .++||||++.+||+++|.++|+++|+       .++|+++||+||++.||++||+||++
T Consensus         4 ~~~~~~~~~r~~ia~~m~~S~~~~P~~~~~~evdvt~l~~~r~~~k~~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~   83 (233)
T 1scz_A            4 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS   83 (233)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCE
T ss_pred             ceeccCCHHHHHHHHHHHHhccCCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhhEE
Confidence            35689999999999999999 78999999999999999999999874       48999999999999999999999999


Q ss_pred             eeCCCeEEEcCCccEEEEEecCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCe
Q 012955          330 CKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRF  409 (452)
Q Consensus       330 ~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f  409 (452)
                      |+ ++.+++++++|||+||++++||++|||+|++++|+.||+++++++.+|+|+|+|.++|++||||||||+|+||+.+|
T Consensus        84 ~~-~~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~G~~~~  162 (233)
T 1scz_A           84 ID-GDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMS  162 (233)
T ss_dssp             EE-TTEEECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGTCCCC
T ss_pred             Ee-CCEEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEeCCCCCccce
Confidence            97 56899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCceEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955          410 DAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLIS  450 (452)
Q Consensus       410 ~pii~ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~  450 (452)
                      +|||||||+|||++|+++++||++ ||++++|++|+|+|+|
T Consensus       163 tpIin~pq~aIl~vG~~~~~pv~~-~g~i~~r~~m~lsls~  202 (233)
T 1scz_A          163 TPIINPPQSAILGMHAIKDRPMAV-NGQVEILPMMYLALSY  202 (233)
T ss_dssp             CCCCCTTCSEEEEEEEEEEEEEEE-TTEEEEEEEEEEEEEE
T ss_pred             EcccCCCCcEEEEccccEEEEEEE-CCEEEEEEEEEEEEEE
Confidence            999999999999999999999996 7999999999999998

>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A

Probab=100.00  E-value=1.2e-50  Score=393.07  Aligned_cols=192  Identities=29%  Similarity=0.348  Sum_probs=184.8

Q ss_pred             CceeccchhhHHHHHHhhhc-CCccEEEEEEEEechHHHHHHHHhCC------CCCCHHHHHHHHHHHHHhhCCcCccee
Q 012955          258 STVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKP------KGVTMTALLAKAAAMALVQHPVVNASC  330 (452)
Q Consensus       258 ~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l~~lr~~~~~------~~vs~t~~l~kA~a~AL~~~P~~Ns~~  330 (452)
                      .+++|++++||.|+++|.+| +++||||++.+||+++|.++|+++|+      .++|+++||+||++.||++||+||++|
T Consensus        15 ~~~~~~~~~rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~~   94 (243)
T 1dpb_A           15 IEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSL   94 (243)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHHHTTCCCCSHHHHHHHHHHHHHHSGGGGEEE
T ss_pred             ceEeeCcHHHHHHHHHHHHhCcCCCeEEEEEEEEhHHHHHHHHHHhhhhhhccCCCChHHHHHHHHHHHHHhChHhhEEE
Confidence            35689999999999999999 79999999999999999999998875      489999999999999999999999999


Q ss_pred             eCC-CeEEEcCCccEEEEEecCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCe
Q 012955          331 KDG-KSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRF  409 (452)
Q Consensus       331 ~~~-~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f  409 (452)
                      +++ +.+++++++|||+||++++||++|||+|+|++|+.||+++++++++|+|+|+|.++|++||||||||+|+||+++|
T Consensus        95 ~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~~  174 (243)
T 1dpb_A           95 APSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAF  174 (243)
T ss_dssp             CTTSSCEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEECTTTCCSCC
T ss_pred             ecCCCeEEEeCceeEEEEEECCCcEEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccce
Confidence            753 6899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCceEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955          410 DAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLIS  450 (452)
Q Consensus       410 ~pii~ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~  450 (452)
                      +|||||||+|||++|+++++||++ ||++++|++|+|+|+|
T Consensus       175 tpIin~pq~aIl~vG~~~~~pv~~-~g~i~~~~~m~lsls~  214 (243)
T 1dpb_A          175 TPIVNAPEVAILGVSKASMQPVWD-GKAFQPRLMLPLSLSY  214 (243)
T ss_dssp             CCCCCTTSSEEEEECCCEEEEEEC-SSSEEEEEEEEEEEEE
T ss_pred             ECccCCCCCeEEEccccEEEEEEE-CCeEEEEEEEEEEEEE
Confidence            999999999999999999999996 7999999999999998

>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}

Probab=100.00  E-value=2.9e-50  Score=389.54  Aligned_cols=193  Identities=30%  Similarity=0.511  Sum_probs=184.8

Q ss_pred             CCceeccchhhHHHHHHhhhc-CCccEEEEEEEEechHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHhhCCcCccee
Q 012955          257 GSTVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKP-----KGVTMTALLAKAAAMALVQHPVVNASC  330 (452)
Q Consensus       257 ~~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l~~lr~~~~~-----~~vs~t~~l~kA~a~AL~~~P~~Ns~~  330 (452)
                      .++++|++++||+||++|.+| +++||||++.+||+++|.++|+++|+     .++|+++||+||++.||++||+||++|
T Consensus        11 ~~~~~~~~~~rk~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~~kls~~~~~ikAv~~Al~~~P~~Na~~   90 (239)
T 3b8k_A           11 VFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEGRSKISVNDFIIKASALACLKVPEANSSW   90 (239)
T ss_dssp             SCCCSSSCCSHHHHHHHHHHHHHHCCCCCEEEEECCTTHHHHHHHTHHHHTTSSCCCHHHHHHHHHHHHHHHCCCSCTTS
T ss_pred             CceeccCChHHHHHHHHHHHhccCCCeEEEEEEEEcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHhChHhhEEE
Confidence            356789999999999999999 89999999999999999999999875     489999999999999999999999999


Q ss_pred             eCCCeEEEcCCccEEEEEecCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeE
Q 012955          331 KDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFD  410 (452)
Q Consensus       331 ~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~  410 (452)
                      + ++.+++++++|||+||++++||++|||+|+|++|+.||+++++++.+|+|+|+|.++|++||||||||+|+||+++|+
T Consensus        91 ~-~~~i~~~~~v~igvAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~ft  169 (239)
T 3b8k_A           91 M-DTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFS  169 (239)
T ss_dssp             C-CCSSSCSCCCCEEECEECSSCEECCEECCSSCCCHHHHHHHHHHHHHHHHTTCCCGGGGCCCSEEEEECCSSCCSSCC
T ss_pred             E-CCEEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCceeEE
Confidence            6 468999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCceEEEEecCceeEEEEc-CCCcEEEEeEEEEEEEe
Q 012955          411 AILPPGQGAIMAVGASKPTVVAD-ADGFFGVKSKMLVSLIS  450 (452)
Q Consensus       411 pii~ppq~aiL~vG~i~~~~v~~-~dg~i~~~~~m~ltlt~  450 (452)
                      |||||||+|||++|+++++||++ +||+|++|++|+|+|+|
T Consensus       170 piin~pq~aIl~vG~~~~~pv~~~~~g~i~~r~~m~lsls~  210 (239)
T 3b8k_A          170 AIINPPQACILAIGASEDKLVPADNEKGFDVASMMSVTLSC  210 (239)
T ss_dssp             CCCCTTSCCCCEECCCCCSCCCCCSSSSCCCCCCEEEEECC
T ss_pred             CcCCCCceEEEECcccEEEEEEEcCCCcEEEEEEEEEEEEE
Confidence            99999999999999999999995 47899999999999987

>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}

Probab=100.00  E-value=8.7e-49  Score=375.61  Aligned_cols=184  Identities=24%  Similarity=0.325  Sum_probs=176.9

Q ss_pred             CceeccchhhHHHHHHhhhc-CCccEEEEEEEEechHHHHHHHHhCCC--CCCHHHHHHHHHHHHHhhCCcCcceeeCC-
Q 012955          258 STVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKPK--GVTMTALLAKAAAMALVQHPVVNASCKDG-  333 (452)
Q Consensus       258 ~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l~~lr~~~~~~--~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~-  333 (452)
                      .+++|++++||+||++|.+| +++||||++.+||+++|.++|+++|+.  ++|+++|++||++.||++||+||++|+++ 
T Consensus         6 ~~~~p~~~~r~~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~g~kls~~~~~ikA~~~Al~~~P~~N~~~~~~~   85 (224)
T 3rqc_A            6 EEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKARNRKVTVTGFLARIVPSILKQYPYLNAIYDETR   85 (224)
T ss_dssp             CBCCCCCHHHHHHHHHHHHHHHHSCEEEEEECCBTHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHHHSGGGSBBCCSST
T ss_pred             ceEeeCcHHHHHHHHHHHHHhcCCCeEEEEEEEEHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCHHhheEEeCCC
Confidence            46789999999999999999 899999999999999999999999874  78999999999999999999999999743 


Q ss_pred             CeEEEcCCccEEEEEecCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeec
Q 012955          334 KSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAIL  413 (452)
Q Consensus       334 ~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii  413 (452)
                      +++++++++|||+||++++||++|||+|+|++|+.||+++++++++|+|+|+|.++|++||||||||+|+||+++|+|||
T Consensus        86 ~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~~~L~~~e~~ggtftISnlG~~G~~~~tpii  165 (224)
T 3rqc_A           86 RVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGIMSTPII  165 (224)
T ss_dssp             TCCCEECSCCEEEEEECSSCEEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCCCGGGSCCCSEEEEECTTTCCSEEECCC
T ss_pred             CEEEEeCccceEeEEEcCCceEEeEECCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCcCCccceEecc
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955          414 PPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLIS  450 (452)
Q Consensus       414 ~ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~  450 (452)
                      ||||+|||++|+++++|+         |++|+|||+|
T Consensus       166 n~pq~aIl~vG~~~~~p~---------r~~m~lsls~  193 (224)
T 3rqc_A          166 NYPEVAILGVHRILEREG---------RKYMYLSLSC  193 (224)
T ss_dssp             CTTBSEEEEECCCEEETT---------EEECCEEEEE
T ss_pred             CCCCceEEEecccEEECC---------ceEEEEEEEe
Confidence            999999999999999876         8999999997

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}

Probab=100.00  E-value=1.4e-39  Score=370.82  Aligned_cols=178  Identities=21%  Similarity=0.284  Sum_probs=145.8

Q ss_pred             HhhhcCCccEEEEEEEEechHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHhhCCcCcceeeCCC---eEEEcCCc
Q 012955          273 NMIESLSVPTFRVGYPIITDALDALYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNASCKDGK---SFTYNANI  342 (452)
Q Consensus       273 ~m~~S~~iP~~~~~~eid~~~l~~lr~~~~~-------~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~---~i~~~~~v  342 (452)
                      +|.+|+++||||++.+||+++|.++|+++|+       .++|+++||+||++.||++||+||++|++++   .++++++|
T Consensus         1 ~m~~S~~~P~~t~~~evDvt~l~~~R~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~~i~~~~~v   80 (1113)
T 2xt6_A            1 GMNASLEVPTATSVRAIPAKLMIDNRVVINNHLKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPAHT   80 (1113)
T ss_dssp             ------CCCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCGGGGCEEEESSSSEEEECCSSC
T ss_pred             ChhhhccCCeEEEEEEEehHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhChHhhEEEeccCCCceEEEeCcc
Confidence            5888989999999999999999999998875       3899999999999999999999999997432   79999999


Q ss_pred             cEEEEEecC--CC---eEeeeecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCeEeecCCCc
Q 012955          343 NIAVAVAIN--GG---LITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQ  417 (452)
Q Consensus       343 nIgvAV~~~--~G---L~vPVI~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f~pii~ppq  417 (452)
                      ||||||+++  +|   |++|||||++++||.+|++++++|++|+|+|+|+++|++||||||||+|+||+++|+|||||||
T Consensus        81 nigiAV~t~~~~G~~gL~vPvI~~a~~~sl~ei~~~i~~l~~rAr~gkL~~~d~~ggTftISNlG~~G~~~~tPIinppq  160 (1113)
T 2xt6_A           81 NLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSVPRLMQGQ  160 (1113)
T ss_dssp             CEEEEC-----------CEEEECCGGGCCHHHHHHHHHHHHHHHTTTCCCGGGTSCCSEEEECC------------CTTC
T ss_pred             cEEEEEeccCCCCceeEEeeeecCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCEEEEeCCCcCCCcceECCCCCCC
Confidence            999999997  56   9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEecCceeEEEEcCC-----CcEEEEeEEEEEEEe
Q 012955          418 GAIMAVGASKPTVVADAD-----GFFGVKSKMLVSLIS  450 (452)
Q Consensus       418 ~aiL~vG~i~~~~v~~~d-----g~i~~~~~m~ltlt~  450 (452)
                      +|||++|+++++||++++     |+|+++++|+|||||
T Consensus       161 ~aIL~vG~i~~~pv~~~~~~~~~g~i~~r~~m~lsls~  198 (1113)
T 2xt6_A          161 GAIIGAGAMEYPAEFQGASEERIADLGIGKLITLTSTY  198 (1113)
T ss_dssp             SEEEEECCCBCCTTSTTCCHHHHHHHTCCCEEEEEEEE
T ss_pred             ceEEEcCccEEEeEEcCCCcccCCceeEeeeeEEEEEE
Confidence            999999999999988531     689999999999998

>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*

Probab=100.00  E-value=2.9e-33  Score=267.03  Aligned_cols=173  Identities=11%  Similarity=0.070  Sum_probs=147.1

Q ss_pred             cchhhHHHHHHhhhcCCccEEEEEEEEechHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCCcCcceeeCCCeEEEcCCc
Q 012955          263 FTTMQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANI  342 (452)
Q Consensus       263 ~s~~rk~ia~~m~~S~~iP~~~~~~eid~~~l~~lr~~~~~~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~~i~~~~~v  342 (452)
                      +..--|+---..-.+.++|||+++.+||+++|.++|++.   ++|+++|++||++.||++||+||++|+ ++.++++++|
T Consensus        13 ~~~W~R~~~f~~f~~~~~P~~t~~~evDvt~l~~~rk~~---~ls~~~~~ikAv~~Al~~~P~~Na~~~-~~~i~~~~~v   88 (219)
T 1q23_A           13 ISQWHRKEHFEAFQSVAQCTYNQTVQLDITAFLKTVKKN---KHKFYPAFIHILARLMNAHPEFRMAMK-DGELVIWDSV   88 (219)
T ss_dssp             GGGCTTHHHHHHHTTTTCEEEEEEEEEECHHHHHHHHHT---TCCHHHHHHHHHHHHHTTCGGGSEEEE-TTEEEEESCC
T ss_pred             cccCCCHHHHHHhcCCCCcEEEEEEEEEhHHHHHHHHHc---CCCHHHHHHHHHHHHHHhChHhhEEEE-CCEEEEeccc
Confidence            333333333344467899999999999999999999763   899999999999999999999999997 5689999999


Q ss_pred             cEEEEE-ecCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcC-CCCc-CccCCCcEEEecCCCCCCCCeEeecCCC-c-
Q 012955          343 NIAVAV-AINGGLITPVLQDADKLDLYLLSQKWKELVEKARSK-QLQP-HEYNSGTFTLSNLGMFGVDRFDAILPPG-Q-  417 (452)
Q Consensus       343 nIgvAV-~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g-~l~~-~d~~ggTftISNlG~~Gv~~f~pii~pp-q-  417 (452)
                      |||+|| ++++||++|||++ +.+++.+|+++++++++|+|+| +|.+ +|+ ||||||||+|++|.+.+.+.+++| + 
T Consensus        89 ~igiAV~~t~~GL~~pvi~~-~~~~l~~i~~~~~~l~~~ar~~~kL~~~~~~-ggtftISnlG~~~ft~i~~~~~~~~~~  166 (219)
T 1q23_A           89 HPCYTVFHEQTETFSSLWSE-YHDDFRQFLHIYSQDVACYGENLAYFPKGFI-ENMFFVSANPWVSFTSFDLNVANMDNF  166 (219)
T ss_dssp             EEEEEEEETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTCCC-SSEEEEEECTTCCCSEEEEEESCCTTC
T ss_pred             CeEEEEEecCCcEEEEEEec-CCCCHHHHHHHHHHHHHHHHccCCCCCcccc-CCEEEEEcCccccccccccCCCCCccc
Confidence            999999 9999999999997 5689999999999999999998 6975 889 999999999998644444443333 2 


Q ss_pred             -eEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955          418 -GAIMAVGASKPTVVADADGFFGVKSKMLVSLIS  450 (452)
Q Consensus       418 -~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~  450 (452)
                       ++||++|+++++     +|    |++|+|+|+|
T Consensus       167 ~~pIi~~G~~~~~-----~~----r~~m~lsls~  191 (219)
T 1q23_A          167 FAPVFTMGKYYTQ-----GD----KVLMPLAIQV  191 (219)
T ss_dssp             CSCEEEECCCEEE-----TT----EEEEEEEEEE
T ss_pred             eeEEEecccEEEE-----CC----cEEEEEEEEE
Confidence             599999999876     34    7999999997

>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*

Probab=100.00  E-value=7.3e-33  Score=263.28  Aligned_cols=169  Identities=11%  Similarity=0.087  Sum_probs=146.8

Q ss_pred             HHHHHHhhhcCCccEEEEEEEEechHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCCcCcceeeCCCeEEEcCCccEEEE
Q 012955          268 AAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVA  347 (452)
Q Consensus       268 k~ia~~m~~S~~iP~~~~~~eid~~~l~~lr~~~~~~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~~i~~~~~vnIgvA  347 (452)
                      |+---..-.+.++|||+++.+||+++|.++|++   .++|+++|++||++.||++||+||++|+ ++.++++++||||+|
T Consensus        13 R~~~f~~f~~~~~P~~~~~~evDvt~l~~~rk~---~~ls~~~~~ikAv~~Al~~~P~~Na~~~-~~~i~~~~~v~igiA   88 (213)
T 3cla_A           13 RREHFEFYRHRLPCGFSLTSKIDITTLKKSLDD---SAYKFYPVMIYLIAQAVNQFDELRMAIK-DDELIVWDSVDPQFT   88 (213)
T ss_dssp             THHHHHHHHHTSCCEEEEEEEEECHHHHHHHHT---SSCCHHHHHHHHHHHHHTTCGGGSEEEE-TTEEEEESCCEEEEE
T ss_pred             cHHHHHHHhCCCCceEEEEEEEEHHHHHHHHHH---hCCCHHHHHHHHHHHHHhhCHHhhEEEE-CCEEEEEeccceeEE
Confidence            333344455678999999999999999999964   4899999999999999999999999997 568999999999999


Q ss_pred             E-ecCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcC-CCCc-CccCCCcEEEecCCCCCCCCeEeecCCC---ceEEE
Q 012955          348 V-AINGGLITPVLQDADKLDLYLLSQKWKELVEKARSK-QLQP-HEYNSGTFTLSNLGMFGVDRFDAILPPG---QGAIM  421 (452)
Q Consensus       348 V-~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g-~l~~-~d~~ggTftISNlG~~Gv~~f~pii~pp---q~aiL  421 (452)
                      | ++++||++|||++ +.+++.+|+++++++++|+|+| +|.+ +|++||||||||+||++.+.|+..++.+   ..+|+
T Consensus        89 Vf~t~~GL~vpvi~~-~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~ggtftISnlg~~~ft~i~~~~~~g~~~~~PIi  167 (213)
T 3cla_A           89 VFHQETETFSALSCP-YSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWVNFDSFNLNVANFTDYFAPII  167 (213)
T ss_dssp             EEETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTSSCCSSEEEEEEETTCCCSCCCCCCSCCTTCCSCEE
T ss_pred             EEeCCCceEEEEEec-CCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEcCCCCCcccccccCCCCCcccccEE
Confidence            9 9999999999987 5699999999999999999996 9988 8899999999999998766664333333   24899


Q ss_pred             EecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955          422 AVGASKPTVVADADGFFGVKSKMLVSLIS  450 (452)
Q Consensus       422 ~vG~i~~~~v~~~dg~i~~~~~m~ltlt~  450 (452)
                      ++|+++++     +|    |++|+|+|+|
T Consensus       168 ~~G~~~~~-----~~----~~~m~lsls~  187 (213)
T 3cla_A          168 TMAKYQQE-----GD----RLLLPLSVQV  187 (213)
T ss_dssp             EEECCEEE-----TT----EEEEEEEEEE
T ss_pred             EeeEEEEE-----CC----eEEEEEEEEE
Confidence            99999875     34    7999999997

>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}

Probab=99.98  E-value=8.9e-32  Score=256.34  Aligned_cols=170  Identities=9%  Similarity=0.057  Sum_probs=147.4

Q ss_pred             HHHHHHhhhcCCccEEEEEEEEechHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCCcCcceeeCCCeEEEcCCccEEEE
Q 012955          268 AAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVA  347 (452)
Q Consensus       268 k~ia~~m~~S~~iP~~~~~~eid~~~l~~lr~~~~~~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~~i~~~~~vnIgvA  347 (452)
                      |+---..-.+.++|||+++.+||+++|.++|++.   ++|+++|++||++.||++||+||++|++++.+++++++|||+|
T Consensus        15 R~~~f~~f~~~~~P~~~~~~evDvt~l~~~rk~~---~ls~~~~~ikAv~~Al~~~P~~n~~~~~~~~i~~~~~i~igvA   91 (217)
T 2i9d_A           15 RKENFNFFRHFQNPQLSITSEVECGGARQRAKAA---GQSFFLHYLYAVLRAANEIPEFRYRIDPDGRVVLYDTIDMLSP   91 (217)
T ss_dssp             THHHHHHHTTCSBCEEEEEEEEECHHHHHHHHHT---TCCHHHHHHHHHHHHHHHSGGGGEEECTTSCEEEESCCEEEEE
T ss_pred             CHHHHHHHhCCCCceEEEEEEEEhHHHHHHHHHc---CCCHHHHHHHHHHHHHHhCHHhheEEcCCCEEEEecccCeEEE
Confidence            3333444556889999999999999999999764   8999999999999999999999999973568999999999999


Q ss_pred             E-ecCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHc-CCCCcC------ccCCCcEEEecCCCCCCCCeEeecCCC---
Q 012955          348 V-AINGGLITPVLQDADKLDLYLLSQKWKELVEKARS-KQLQPH------EYNSGTFTLSNLGMFGVDRFDAILPPG---  416 (452)
Q Consensus       348 V-~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~-g~l~~~------d~~ggTftISNlG~~Gv~~f~pii~pp---  416 (452)
                      | ++++||++||+.. ..+++.+|+++++++++|+|+ |+|.++      |++||||||||+|+++.+.|+..++++   
T Consensus        92 Vf~t~~GL~~pv~~~-~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~~~e~~ggtftISnlg~~~ft~i~~~~~~g~~~  170 (217)
T 2i9d_A           92 IKIKENGKFFTTRFP-YHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVADGDYGLILLSATPDLYFTSITGTQEKRSGN  170 (217)
T ss_dssp             EECSTTSCEEEEEEC-CCSSHHHHHHHHHHHHHHCCSSCCTTHHHHHHHHHTCCCEEEEEECTTCCCSEECCCBCSTTCC
T ss_pred             EEecCCceEeEEEec-CCCCHHHHHHHHHHHHHHHHhcCCCCCccccccccCCCCEEEEEcCCccccceeecCCCCCccc
Confidence            9 9999999999975 568999999999999999998 599995      999999999999998766665444444   


Q ss_pred             ceEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955          417 QGAIMAVGASKPTVVADADGFFGVKSKMLVSLIS  450 (452)
Q Consensus       417 q~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~  450 (452)
                      ..+||++|+++++     +|    |++|+|+|+|
T Consensus       171 ~~PIi~~Gk~~~~-----~~----r~~m~lsls~  195 (217)
T 2i9d_A          171 NYPLLNAGKAIIR-----EG----RLVMPIAMTI  195 (217)
T ss_dssp             SSCEEEECCCEEE-----TT----EEEEEEEEEE
T ss_pred             eEEEEecceEEEE-----CC----cEEEEEEEEe
Confidence            2589999999875     34    7999999997

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=99.80  E-value=3e-19  Score=152.01  Aligned_cols=87  Identities=34%  Similarity=0.585  Sum_probs=81.3

Q ss_pred             ceeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCC-ccCCCCeEEEEec
Q 012955           56 SKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGE-SAPVGAAIGILAE  134 (452)
Q Consensus        56 ~~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~-~v~~G~~l~~i~~  134 (452)
                      ++.++|+||+||++|.+|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|..|++|+.|.+
T Consensus         5 p~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~~   84 (108)
T 2dne_A            5 SSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITVG   84 (108)
T ss_dssp             CCCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEES
T ss_pred             ccceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEec
Confidence            367899999999999999999999999999999999999999999999999999999999999999 8999999999988


Q ss_pred             chhhHHHH
Q 012955          135 TEAEVAQA  142 (452)
Q Consensus       135 ~~~~~~~~  142 (452)
                      .+++...+
T Consensus        85 ~~~~~~~~   92 (108)
T 2dne_A           85 KPEDIEAF   92 (108)
T ss_dssp             CHHHHHHH
T ss_pred             Cccchhhh
Confidence            77665444

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=99.78  E-value=9.7e-19  Score=152.96  Aligned_cols=85  Identities=39%  Similarity=0.677  Sum_probs=80.0

Q ss_pred             cceeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCC-ccCCCCeEEEEe
Q 012955           55 QSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGE-SAPVGAAIGILA  133 (452)
Q Consensus        55 ~~~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~-~v~~G~~l~~i~  133 (452)
                      .++..+|.||+||++|.+|+|++|+|++||.|++||+||+||+||++++|+||++|+|.++++++|+ .|.+|++|+.|.
T Consensus        24 ~p~~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~  103 (128)
T 1y8o_B           24 YPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV  103 (128)
T ss_dssp             CCSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEE
T ss_pred             CCcceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEe
Confidence            4567899999999999999999999999999999999999999999999999999999999999998 899999999998


Q ss_pred             cchhhH
Q 012955          134 ETEAEV  139 (452)
Q Consensus       134 ~~~~~~  139 (452)
                      +.+++.
T Consensus       104 ~~~~~~  109 (128)
T 1y8o_B          104 EKEADI  109 (128)
T ss_dssp             SSGGGG
T ss_pred             cCccch
Confidence            766543

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=99.78  E-value=1.1e-18  Score=142.66  Aligned_cols=81  Identities=40%  Similarity=0.676  Sum_probs=77.2

Q ss_pred             eeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCC-ccCCCCeEEEEecc
Q 012955           57 KIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGE-SAPVGAAIGILAET  135 (452)
Q Consensus        57 ~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~-~v~~G~~l~~i~~~  135 (452)
                      +..+|.||+||+++.+|+|.+|+|++||.|++||.||+||+||+.++|+||++|+|.++++++|+ .|..|++|+.|.+.
T Consensus         4 ~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~~   83 (87)
T 3crk_C            4 PHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEK   83 (87)
T ss_dssp             CEEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEESS
T ss_pred             cceEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEcc
Confidence            56899999999999999999999999999999999999999999999999999999999999999 89999999999865


Q ss_pred             hh
Q 012955          136 EA  137 (452)
Q Consensus       136 ~~  137 (452)
                      ++
T Consensus        84 ~~   85 (87)
T 3crk_C           84 EA   85 (87)
T ss_dssp             ST
T ss_pred             cC
Confidence            43

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=1.1e-18  Score=145.93  Aligned_cols=81  Identities=43%  Similarity=0.730  Sum_probs=77.3

Q ss_pred             eeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCcc-CCCCeEEEEecc
Q 012955           57 KIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESA-PVGAAIGILAET  135 (452)
Q Consensus        57 ~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v-~~G~~l~~i~~~  135 (452)
                      +.++|+||+||++|.+|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.+ ..|++|+.|...
T Consensus         6 ~~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~~~   85 (98)
T 2dnc_A            6 SGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEE   85 (98)
T ss_dssp             CCEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEECT
T ss_pred             ccEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEecC
Confidence            6689999999999999999999999999999999999999999999999999999999999999999 999999999765


Q ss_pred             hh
Q 012955          136 EA  137 (452)
Q Consensus       136 ~~  137 (452)
                      ++
T Consensus        86 ~~   87 (98)
T 2dnc_A           86 GE   87 (98)
T ss_dssp             TS
T ss_pred             CC
Confidence            43

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=99.75  E-value=2.1e-18  Score=142.81  Aligned_cols=80  Identities=23%  Similarity=0.400  Sum_probs=76.5

Q ss_pred             ceeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955           56 SKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus        56 ~~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      +++++|.||+||+++.+|+|.+|+|++||.|++||+|++||+||+.++|+||++|+|.++++++|+.+..|++|+.|...
T Consensus         2 ~~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~~   81 (93)
T 1k8m_A            2 GQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETE   81 (93)
T ss_dssp             CCCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECS
T ss_pred             CcceEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEecC
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999753

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=99.71  E-value=2.2e-17  Score=132.05  Aligned_cols=76  Identities=32%  Similarity=0.596  Sum_probs=73.8

Q ss_pred             EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE  134 (452)
Q Consensus        59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~  134 (452)
                      ++|.||+||+++.+|+|.+|++++||.|++||+|+++|+||+..+|+||++|+|.++++++|+.+..|++|+.|..
T Consensus         2 ~~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~   77 (79)
T 1ghj_A            2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE   77 (79)
T ss_dssp             EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred             cEEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence            5799999999999999999999999999999999999999999999999999999999999999999999999864

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=99.66  E-value=1.5e-16  Score=126.49  Aligned_cols=75  Identities=31%  Similarity=0.546  Sum_probs=73.1

Q ss_pred             EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (452)
Q Consensus        59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~  133 (452)
                      .+|.||++|+++..|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.|.
T Consensus         2 ~~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~   76 (77)
T 2l5t_A            2 YEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID   76 (77)
T ss_dssp             EEEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred             eEEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence            579999999999999999999999999999999999999999999999999999999999999999999999985

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.66  E-value=1.6e-16  Score=127.16  Aligned_cols=76  Identities=25%  Similarity=0.464  Sum_probs=72.9

Q ss_pred             eEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955           58 IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus        58 ~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      .++|.||++|++  +|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.|...
T Consensus         2 ~~~i~~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~   77 (80)
T 1qjo_A            2 VKEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVE   77 (80)
T ss_dssp             EEEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESC
T ss_pred             CeEEECCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEcc
Confidence            368999999998  9999999999999999999999999999999999999999999999999999999999999764

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.65  E-value=4.7e-18  Score=136.47  Aligned_cols=76  Identities=30%  Similarity=0.577  Sum_probs=73.4

Q ss_pred             EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE  134 (452)
Q Consensus        59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~  134 (452)
                      .+|.||+||+++.+|+|.+|++++||.|++||+|++||+||+.++|+||++|+|.++++++|+.+..|++|+.|..
T Consensus         3 ~~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~   78 (80)
T 1pmr_A            3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE   78 (80)
T ss_dssp             CCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred             cEEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence            4789999999999999999999999999999999999999999999999999999999999999999999998864

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=99.61  E-value=1.4e-15  Score=121.46  Aligned_cols=74  Identities=26%  Similarity=0.410  Sum_probs=70.6

Q ss_pred             EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus        59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      .+|.||++|++  + +|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.|...
T Consensus         2 ~~i~~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~~   75 (79)
T 1iyu_A            2 EIIRVPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPA   75 (79)
T ss_dssp             EEEECCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECC
T ss_pred             cEEECCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEecC
Confidence            47899999996  7 99999999999999999999999999999999999999999999999999999999999754

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=99.59  E-value=4.6e-16  Score=124.87  Aligned_cols=77  Identities=22%  Similarity=0.394  Sum_probs=73.0

Q ss_pred             eEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955           58 IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus        58 ~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      +++|.||++| ++..|+|.+|++++||.|++||.|+++|++|+..+|+||++|+|.++++++|+.+..|++|+.|...
T Consensus         2 ~~~i~~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~~   78 (81)
T 1gjx_A            2 LVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAE   78 (81)
T ss_dssp             CEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCS
T ss_pred             cEEEEcCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEec
Confidence            3689999999 6889999999999999999999999999999999999999999999999999999999999999653

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=99.42  E-value=8.7e-15  Score=118.72  Aligned_cols=72  Identities=25%  Similarity=0.452  Sum_probs=67.7

Q ss_pred             EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus        59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      ++|.+|++      |+|.+|++++||.|++||+|++||++|+..+|+||++|+|.++++++|+.|..|++|+.|...+
T Consensus         3 ~~i~~p~~------G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~~   74 (85)
T 2k7v_A            3 KEVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG   74 (85)
T ss_dssp             SCCCCCSC------CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECCS
T ss_pred             cEEECCCe------EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence            46788977      8999999999999999999999999999999999999999999999999999999999997643

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=99.40  E-value=9.9e-13  Score=102.55  Aligned_cols=63  Identities=24%  Similarity=0.354  Sum_probs=61.0

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955           72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE  134 (452)
Q Consensus        72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~  134 (452)
                      .|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.|.+
T Consensus         7 ~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~   69 (72)
T 1z6h_A            7 AGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSN   69 (72)
T ss_dssp             SEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGG
T ss_pred             cEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeC
Confidence            499999999999999999999999999999999999999999999999999999999999865

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=99.38  E-value=3.7e-13  Score=109.00  Aligned_cols=64  Identities=20%  Similarity=0.271  Sum_probs=61.0

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955           72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus        72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      .|+|.+|++++||.|++||.|++||+||+.++|+||++|+|.+++ ++|+.|..|++|+.|.+.+
T Consensus        13 ~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~~~   76 (84)
T 2kcc_A           13 AGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLELDD   76 (84)
T ss_dssp             SCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEECSC
T ss_pred             CEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeCCC
Confidence            499999999999999999999999999999999999999999999 9999999999999997643

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=99.34  E-value=2.3e-13  Score=112.54  Aligned_cols=79  Identities=16%  Similarity=0.330  Sum_probs=29.0

Q ss_pred             cceeEEEEcCCCCCCC----ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEE
Q 012955           55 QSKIREIFMPALSSTM----TEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIG  130 (452)
Q Consensus        55 ~~~~~~i~~P~l~~~~----~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~  130 (452)
                      .....+|.+|......    ..|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++.+++|+.|..|++|+
T Consensus        12 ~~~~~~v~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~   91 (94)
T 2jku_A           12 DLGTENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLV   91 (94)
T ss_dssp             ------------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC---------------------------------
T ss_pred             cccCEEEEcCCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEE
Confidence            3455688999888764    589999999999999999999999999999999999999999999999999999999998


Q ss_pred             EEe
Q 012955          131 ILA  133 (452)
Q Consensus       131 ~i~  133 (452)
                      .|+
T Consensus        92 ~ie   94 (94)
T 2jku_A           92 ELE   94 (94)
T ss_dssp             ---
T ss_pred             EEC
Confidence            873

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=2.9e-12  Score=106.99  Aligned_cols=62  Identities=19%  Similarity=0.269  Sum_probs=60.0

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955           72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE  134 (452)
Q Consensus        72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~  134 (452)
                      .|+|.+|++++||.|++||+|+++|+||+..+|+||++|+|. +++++|+.|..|++|+.|..
T Consensus        25 ~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~   86 (100)
T 2dn8_A           25 AGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLEL   86 (100)
T ss_dssp             CEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEECC
T ss_pred             CEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEc
Confidence            499999999999999999999999999999999999999999 99999999999999999965

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=99.28  E-value=1.4e-11  Score=96.33  Aligned_cols=62  Identities=27%  Similarity=0.474  Sum_probs=59.7

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955           72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (452)
Q Consensus        72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~  133 (452)
                      .|+|.+|++++||.|++||+|++++++|+..+|+||.+|+|.++.+++|+.+..|++|+.|+
T Consensus        13 ~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~   74 (74)
T 2d5d_A           13 PGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG   74 (74)
T ss_dssp             CEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred             CEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence            39999999999999999999999999999999999999999999999999999999999873

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=99.27  E-value=1.4e-11  Score=97.36  Aligned_cols=62  Identities=23%  Similarity=0.434  Sum_probs=59.8

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955           72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (452)
Q Consensus        72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~  133 (452)
                      .|+|.+|++++||.|++||+|++++++|+..+|+||++|+|.++.+++|+.+..|++|+.|+
T Consensus        16 ~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~   77 (77)
T 1dcz_A           16 AGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG   77 (77)
T ss_dssp             SCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred             CEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence            39999999999999999999999999999999999999999999999999999999999873

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=99.25  E-value=1.1e-11  Score=98.79  Aligned_cols=61  Identities=20%  Similarity=0.329  Sum_probs=58.0

Q ss_pred             EEEEE-------EEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955           73 GKIVS-------WIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (452)
Q Consensus        73 g~I~~-------w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~  133 (452)
                      |+|.+       |++++||.|++||.|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.|+
T Consensus        13 G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~   80 (80)
T 1bdo_A           13 GTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             EEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             eEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence            77777       59999999999999999999999999999999999999999999999999999873

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=99.21  E-value=1.5e-11  Score=102.51  Aligned_cols=65  Identities=23%  Similarity=0.330  Sum_probs=62.1

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955           72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus        72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      .|+|.+|++++||.|++||+|++|+++|+..+|+||++|+|.++++++|+.|..|++|+.|.+.+
T Consensus        22 ~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~~~   86 (99)
T 2ejm_A           22 TGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEE   86 (99)
T ss_dssp             SEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECCCC
T ss_pred             CEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEECCC
Confidence            39999999999999999999999999999999999999999999999999999999999997644

>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus}

Probab=99.21  E-value=7.8e-12  Score=87.58  Aligned_cols=40  Identities=40%  Similarity=0.654  Sum_probs=37.5

Q ss_pred             cccChhHHHHHhhcCCCccccccCCCCcccchhhHHHhhc
Q 012955          186 TVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAG  225 (452)
Q Consensus       186 ~~asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV~~~~~  225 (452)
                      +.+||+||+||+++||||+.|.|||++|||+++||++|+.
T Consensus         1 ~~asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~~   40 (41)
T 2eq9_C            1 MLAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAYAE   40 (41)
T ss_dssp             CCBCHHHHHHHHHTTCCGGGSCCCSTTCCBCHHHHHHHHC
T ss_pred             CCCChHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHhc
Confidence            3579999999999999999999999999999999999864

>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} SCOP: a.9.1.0 PDB: 1zwv_A

Probab=99.19  E-value=7.3e-12  Score=94.20  Aligned_cols=43  Identities=37%  Similarity=0.556  Sum_probs=39.3

Q ss_pred             CccccChhHHHHHhhcCCCccccccCCCCcccchhhHHHhhcc
Q 012955          184 RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGI  226 (452)
Q Consensus       184 ~~~~asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV~~~~~~  226 (452)
                      .++.+||+||+||+++||||+.|.|||++|||+++||++|++.
T Consensus         6 ~~v~aSPaaRrlA~e~gIdl~~V~GTG~~GRItk~DV~~~~~~   48 (58)
T 3rnm_E            6 RKTLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNYLEK   48 (58)
T ss_dssp             --CCCCHHHHHHHHHTTCCGGGCCCCSGGGCCCHHHHHHHHHH
T ss_pred             CCcCcCHHHHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHHhh
Confidence            4688999999999999999999999999999999999999754

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=99.18  E-value=3.1e-11  Score=132.35  Aligned_cols=62  Identities=23%  Similarity=0.274  Sum_probs=60.3

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955           72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (452)
Q Consensus        72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~  133 (452)
                      .|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus       620 ~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~  681 (681)
T 3n6r_A          620 PGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE  681 (681)
T ss_dssp             CEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred             cEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence            49999999999999999999999999999999999999999999999999999999999884

>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus}

Probab=99.17  E-value=1.4e-11  Score=85.83  Aligned_cols=38  Identities=47%  Similarity=0.729  Sum_probs=36.2

Q ss_pred             cChhHHHHHhhcCCCccccccCCCCcccchhhHHHhhc
Q 012955          188 ATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAG  225 (452)
Q Consensus       188 asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV~~~~~  225 (452)
                      +||+||++|+++||||+.|.|||++|||+++||++|++
T Consensus         2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~~   39 (40)
T 2eq8_C            2 AAPSIRRLARELGVDLTRLRGTGLAGRITEEDVRRAAG   39 (40)
T ss_dssp             CCHHHHHHHHHHTCCGGGCCCCSTTSCCCHHHHHHHHC
T ss_pred             CChHHHHHHHHhCCChhhcCCCCCCCceeHHHHHHHhc
Confidence            69999999999999999999999999999999999863

>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus}

Probab=99.16  E-value=1.1e-11  Score=86.31  Aligned_cols=38  Identities=39%  Similarity=0.504  Sum_probs=35.1

Q ss_pred             cChhHHHHHhhcCCCccccccCCCCcccchhhHHHhhc
Q 012955          188 ATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAG  225 (452)
Q Consensus       188 asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV~~~~~  225 (452)
                      +||+||+||+++||||+.|.|||++|||+++||++|+.
T Consensus         2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~~   39 (40)
T 2eq7_C            2 AMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHLE   39 (40)
T ss_dssp             CCHHHHHHHHHTTCCTTTSCCCSSSSCCCHHHHTTC--
T ss_pred             CCcHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHhc
Confidence            69999999999999999999999999999999998753

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=99.11  E-value=1.2e-10  Score=134.63  Aligned_cols=60  Identities=22%  Similarity=0.429  Sum_probs=59.4

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL  132 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i  132 (452)
                      |+|.+|+|++||.|++||+|++||+|||+++|+||++|+|.++++++|+.|.+|++|+.|
T Consensus      1176 G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A         1176 GRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp             EEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred             EEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence            999999999999999999999999999999999999999999999999999999999987

>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C*

Probab=99.10  E-value=3.9e-11  Score=87.34  Aligned_cols=43  Identities=35%  Similarity=0.540  Sum_probs=39.3

Q ss_pred             CccccChhHHHHHhhcCCCccccccCCCCcccchhhHHHhhcc
Q 012955          184 RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGI  226 (452)
Q Consensus       184 ~~~~asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV~~~~~~  226 (452)
                      +++.+||++|+||+++||||..|.|||++|||+++||++|+..
T Consensus         5 ~~~~asP~ar~la~e~gidl~~v~gtG~~Gri~k~Dv~~~~~~   47 (49)
T 1w85_I            5 RRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAG   47 (49)
T ss_dssp             -CCCCCHHHHHHHHHTTCCTTTSCCCSGGGCCCHHHHHHHHCC
T ss_pred             CcccCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHHhc
Confidence            3567899999999999999999999999999999999999753

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=99.10  E-value=1.4e-10  Score=133.54  Aligned_cols=63  Identities=16%  Similarity=0.401  Sum_probs=60.4

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      |+|++|+|++||.|++||+|++||+|||+++|+||++|+|.++++++|+.|..|++|+.|+..
T Consensus      1086 G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~~ 1148 (1150)
T 3hbl_A         1086 GSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKA 1148 (1150)
T ss_dssp             EEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC--
T ss_pred             EEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence            999999999999999999999999999999999999999999999999999999999999653

>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A

Probab=99.08  E-value=4.5e-11  Score=87.75  Aligned_cols=42  Identities=38%  Similarity=0.620  Sum_probs=38.9

Q ss_pred             CccccChhHHHHHhhcCCCccccccCCCCcccchhhHHHhhc
Q 012955          184 RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAG  225 (452)
Q Consensus       184 ~~~~asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV~~~~~  225 (452)
                      .++.+||++|+||+++||||+.|.|||++|||+++||++|+.
T Consensus         8 ~~~~asP~aR~lA~e~gidl~~V~gtG~~GrI~k~DV~~~~~   49 (51)
T 1bal_A            8 NNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLA   49 (51)
T ss_dssp             SSCCCCGGGTTHHHHTTCCTTSSCCCSTTSCCCHHHHTTTSC
T ss_pred             CCCCCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHhc
Confidence            356789999999999999999999999999999999998864

>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K

Probab=98.99  E-value=1.4e-10  Score=88.97  Aligned_cols=43  Identities=30%  Similarity=0.448  Sum_probs=39.9

Q ss_pred             CccccChhHHHHHhhcCCCccccccCCCCcccchhhHHHhhcc
Q 012955          184 RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGI  226 (452)
Q Consensus       184 ~~~~asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV~~~~~~  226 (452)
                      .++.+||+||+||+++||||..|.|||++|||+++||++|+..
T Consensus         8 ~~~~asPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~   50 (64)
T 2f60_K            8 LRFRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQL   50 (64)
T ss_dssp             HHHHBCHHHHHHHHHTTCCGGGSCCCSGGGCBCHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHHhc
Confidence            3567899999999999999999999999999999999999764

>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A

Probab=98.97  E-value=2.3e-10  Score=87.33  Aligned_cols=42  Identities=43%  Similarity=0.588  Sum_probs=39.5

Q ss_pred             ccccChhHHHHHhhcCCCccccccCCCCcccchhhHHHhhcc
Q 012955          185 KTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGI  226 (452)
Q Consensus       185 ~~~asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV~~~~~~  226 (452)
                      ++++||++|+||+++||||..|.|||++|||+++||++|+..
T Consensus         4 ~~~asPaaRklA~e~gidl~~V~gtG~~GrItk~DV~~~~~~   45 (62)
T 1w4i_A            4 EVAAMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYAEE   45 (62)
T ss_dssp             SSEECHHHHHHHHHHTCCGGGSCCCSTTSEECHHHHHHHHHH
T ss_pred             cccCChHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHHhc
Confidence            467899999999999999999999999999999999999864

>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens}

Probab=98.97  E-value=4.7e-10  Score=87.62  Aligned_cols=43  Identities=37%  Similarity=0.570  Sum_probs=40.0

Q ss_pred             CccccChhHHHHHhhcCCCccccccCCCCcccchhhHHHhhcc
Q 012955          184 RKTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAGI  226 (452)
Q Consensus       184 ~~~~asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV~~~~~~  226 (452)
                      .+++++|+||+||+++||||..|.|||++|||+++||++|+..
T Consensus        14 ~~~~aSPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~   56 (70)
T 2coo_A           14 RKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEK   56 (70)
T ss_dssp             CSCCSCHHHHHHHHHHTCCGGGSCCCSTTSCCCHHHHHHHHHH
T ss_pred             CccccCcHHHHHHHHhCCCccccCCCCCCCceeHHHHHHHHhc
Confidence            3567999999999999999999999999999999999999864

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=98.81  E-value=3.5e-09  Score=90.15  Aligned_cols=67  Identities=21%  Similarity=0.421  Sum_probs=61.2

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCcee-----------------------------eEEEcCCCeEEEEEEeCCCCc
Q 012955           72 EGKIVSWIKSEGDVLSKGESVVVVESDKAD-----------------------------MDVETFYDGILAAIVVPEGES  122 (452)
Q Consensus        72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~-----------------------------~ev~ap~~G~l~~i~v~~G~~  122 (452)
                      .|+|.+|+|++||.|++||+|+++++.++.                             ..|+||++|+|.++.+++|+.
T Consensus         9 ~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~   88 (116)
T 2k32_A            9 SGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGDY   88 (116)
T ss_dssp             CEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTCE
T ss_pred             CEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCCCCE
Confidence            499999999999999999999999988665                             489999999999999999999


Q ss_pred             cCCC-CeEEEEecchhh
Q 012955          123 APVG-AAIGILAETEAE  138 (452)
Q Consensus       123 v~~G-~~l~~i~~~~~~  138 (452)
                      |..| ++|+.|.+.+.-
T Consensus        89 v~~g~~~l~~i~~~~~~  105 (116)
T 2k32_A           89 VSASTTELVRVTNLNPI  105 (116)
T ss_dssp             ECTTTSCCEEEECSCTH
T ss_pred             EcCCCcEEEEEECCCeE
Confidence            9999 999999876543

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=98.79  E-value=1.3e-09  Score=119.62  Aligned_cols=61  Identities=18%  Similarity=0.247  Sum_probs=59.4

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955           72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL  132 (452)
Q Consensus        72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i  132 (452)
                      .|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|..|++|+.|
T Consensus       657 ~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i  717 (718)
T 3bg3_A          657 PGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEI  717 (718)
T ss_dssp             CEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECB
T ss_pred             CeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEe
Confidence            4999999999999999999999999999999999999999999999999999999999876

>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A

Probab=98.79  E-value=7.6e-09  Score=91.02  Aligned_cols=71  Identities=24%  Similarity=0.193  Sum_probs=59.8

Q ss_pred             EEEcCCCCCCCceEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEE---EeCCCCccC---CCC-eEEE
Q 012955           60 EIFMPALSSTMTEGKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAI---VVPEGESAP---VGA-AIGI  131 (452)
Q Consensus        60 ~i~~P~l~~~~~eg~I~~w~v-~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i---~v~~G~~v~---~G~-~l~~  131 (452)
                      .+..|.+|.      |+.+.+ ++||.|++||.||+||+||+..+|.||.+|+|.++   +++.|+.|.   .|+ .|+.
T Consensus        38 ~~a~~~lG~------i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~  111 (136)
T 1zko_A           38 NHAQEQLGD------VVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFK  111 (136)
T ss_dssp             HHHHHHHCS------EEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEE
T ss_pred             hhhcccCCC------cEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEE
Confidence            344565553      555544 99999999999999999999999999999999999   888999997   898 8999


Q ss_pred             Eecch
Q 012955          132 LAETE  136 (452)
Q Consensus       132 i~~~~  136 (452)
                      |...+
T Consensus       112 i~~~~  116 (136)
T 1zko_A          112 MEISD  116 (136)
T ss_dssp             EEESC
T ss_pred             EEECC
Confidence            87543

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=98.75  E-value=4.4e-09  Score=121.43  Aligned_cols=61  Identities=21%  Similarity=0.397  Sum_probs=53.4

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~  133 (452)
                      |+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus      1104 G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A         1104 GVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp             EEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred             eEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence            9999999999999999999999999999999999999999999999999999999999885

>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1

Probab=98.35  E-value=6.1e-07  Score=78.10  Aligned_cols=71  Identities=30%  Similarity=0.288  Sum_probs=55.9

Q ss_pred             EEEEcCCCCCCCceEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeC---CCCcc---CCCC-eEE
Q 012955           59 REIFMPALSSTMTEGKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVP---EGESA---PVGA-AIG  130 (452)
Q Consensus        59 ~~i~~P~l~~~~~eg~I~~w~v-~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~---~G~~v---~~G~-~l~  130 (452)
                      .++..|.+|      .|+.+.+ ++||+|++||.||+||+||+..+|.||.+|+|.++..+   ..+.+   +.|+ -|+
T Consensus        28 t~~a~~~lG------~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~  101 (128)
T 1onl_A           28 TDYAQDALG------DVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIF  101 (128)
T ss_dssp             CHHHHHHHC------SEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCE
T ss_pred             ehHHhhcCC------CceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEE
Confidence            334445555      3555555 99999999999999999999999999999999999754   45566   6777 788


Q ss_pred             EEecc
Q 012955          131 ILAET  135 (452)
Q Consensus       131 ~i~~~  135 (452)
                      .|...
T Consensus       102 ~i~~~  106 (128)
T 1onl_A          102 RLKPR  106 (128)
T ss_dssp             EEEES
T ss_pred             EEEEC
Confidence            88643

>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*

Probab=98.32  E-value=3e-07  Score=80.38  Aligned_cols=71  Identities=21%  Similarity=0.129  Sum_probs=55.7

Q ss_pred             EEEEcCCCCCCCceEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCC---Ccc---CCCC-eEE
Q 012955           59 REIFMPALSSTMTEGKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEG---ESA---PVGA-AIG  130 (452)
Q Consensus        59 ~~i~~P~l~~~~~eg~I~~w~v-~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G---~~v---~~G~-~l~  130 (452)
                      .++.+|.+|      .|+.+.+ ++||+|++||.||+||+||+..+|.||.+|+|.++..+.+   +.|   +.|+ -|+
T Consensus        28 td~a~~~lG------~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~  101 (131)
T 1hpc_A           28 TDHAQDHLG------EVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMI  101 (131)
T ss_dssp             CHHHHHHHC------SEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCE
T ss_pred             ehhhcccCC------CceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEE
Confidence            334455554      4666666 9999999999999999999999999999999999985554   455   3566 788


Q ss_pred             EEecc
Q 012955          131 ILAET  135 (452)
Q Consensus       131 ~i~~~  135 (452)
                      .|...
T Consensus       102 ~i~~~  106 (131)
T 1hpc_A          102 KIKPT  106 (131)
T ss_dssp             EEEES
T ss_pred             EEEEC
Confidence            87643

>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*

Probab=98.29  E-value=8e-07  Score=77.36  Aligned_cols=71  Identities=23%  Similarity=0.134  Sum_probs=55.2

Q ss_pred             EEEEcCCCCCCCceEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCC---CccC---CCC-eEE
Q 012955           59 REIFMPALSSTMTEGKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEG---ESAP---VGA-AIG  130 (452)
Q Consensus        59 ~~i~~P~l~~~~~eg~I~~w~v-~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G---~~v~---~G~-~l~  130 (452)
                      .++..|.||.      |+.+.+ ++||.|++||.||+||+||+..+|.||.+|+|.++..+.+   +.+.   .|+ -|+
T Consensus        29 td~a~~~lG~------i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~  102 (128)
T 3a7l_A           29 TEHAQELLGD------MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIF  102 (128)
T ss_dssp             CHHHHHHHCS------EEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCE
T ss_pred             ehHHhccCCc------eEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEE
Confidence            3444555553      555555 9999999999999999999999999999999999976543   4454   666 788


Q ss_pred             EEecc
Q 012955          131 ILAET  135 (452)
Q Consensus       131 ~i~~~  135 (452)
                      .|...
T Consensus       103 ~i~~~  107 (128)
T 3a7l_A          103 KIKAS  107 (128)
T ss_dssp             EEEES
T ss_pred             EEEEC
Confidence            87643

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=97.91  E-value=1.4e-05  Score=82.35  Aligned_cols=64  Identities=16%  Similarity=0.259  Sum_probs=57.5

Q ss_pred             eEEEEEEEc-CCCCeecCCCeEEEEEeC------------------------------------------------ceee
Q 012955           72 EGKIVSWIK-SEGDVLSKGESVVVVESD------------------------------------------------KADM  102 (452)
Q Consensus        72 eg~I~~w~v-~~Gd~V~~gd~l~~vetd------------------------------------------------K~~~  102 (452)
                      .|.|.+++| ++||.|++||+|+++++.                                                ....
T Consensus       129 ~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~  208 (413)
T 3ne5_B          129 AGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTRF  208 (413)
T ss_dssp             CEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCCCEE
T ss_pred             CEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhccccccE
Confidence            399999998 999999999999999942                                                2356


Q ss_pred             EEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955          103 DVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus       103 ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      .|+||++|+|.++.+++|+.|..|++|+.|.+.
T Consensus       209 ~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~~~  241 (413)
T 3ne5_B          209 TLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGM  241 (413)
T ss_dssp             EEECSSSEEEEECCCCTTCEECTTSCSEEEEEE
T ss_pred             EEEcCCCeEEEEEEcCCCCEECCCCcEEEEeCC
Confidence            899999999999999999999999999998754

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=97.90  E-value=1.3e-05  Score=80.41  Aligned_cols=64  Identities=22%  Similarity=0.297  Sum_probs=58.0

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCce----------------------------------------------------
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVESDKA----------------------------------------------------  100 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~----------------------------------------------------  100 (452)
                      |+|.+|+|++||.|++||+|++++....                                                    
T Consensus        66 G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~l  145 (359)
T 3lnn_A           66 GRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAASES  145 (359)
T ss_dssp             EEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999997532                                                    


Q ss_pred             ------------------------eeEEEcCCCeEEEEEEeCCCCccCC-CCeEEEEecch
Q 012955          101 ------------------------DMDVETFYDGILAAIVVPEGESAPV-GAAIGILAETE  136 (452)
Q Consensus       101 ------------------------~~ev~ap~~G~l~~i~v~~G~~v~~-G~~l~~i~~~~  136 (452)
                                              ...|+||++|+|.++.+.+|+.+.. |++|+.|.+.+
T Consensus       146 ~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~~~~  206 (359)
T 3lnn_A          146 QRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVADLS  206 (359)
T ss_dssp             HHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEECCS
T ss_pred             HHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEecCC
Confidence                                    3579999999999999999999998 99999997644

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=97.89  E-value=6.5e-06  Score=79.68  Aligned_cols=64  Identities=22%  Similarity=0.288  Sum_probs=56.7

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCc-----------------------------------------------------
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVESDK-----------------------------------------------------   99 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vetdK-----------------------------------------------------   99 (452)
                      |+|.+|+|++||.|++||+|+++++..                                                     
T Consensus        31 G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~a  110 (277)
T 2f1m_A           31 GIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQA  110 (277)
T ss_dssp             EEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHHH
T ss_pred             EEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHH
Confidence            999999999999999999999998642                                                     


Q ss_pred             ------------------eeeEEEcCCCeEEEEEEeCCCCccCCC--CeEEEEecch
Q 012955          100 ------------------ADMDVETFYDGILAAIVVPEGESAPVG--AAIGILAETE  136 (452)
Q Consensus       100 ------------------~~~ev~ap~~G~l~~i~v~~G~~v~~G--~~l~~i~~~~  136 (452)
                                        -...|+||++|+|..+.+++|+.|..|  ++|+.|.+.+
T Consensus       111 ~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~~~~  167 (277)
T 2f1m_A          111 NAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLD  167 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEEECS
T ss_pred             HHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEecCC
Confidence                              134899999999999999999999999  6899987643

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=97.83  E-value=1.5e-05  Score=79.37  Aligned_cols=64  Identities=17%  Similarity=0.261  Sum_probs=56.3

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCc-----------------------------------------------------
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVESDK-----------------------------------------------------   99 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vetdK-----------------------------------------------------   99 (452)
                      |+|.+|+|++||.|++||+|++++...                                                     
T Consensus        40 G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a  119 (341)
T 3fpp_A           40 GQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNA  119 (341)
T ss_dssp             EEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHHHH
T ss_pred             cEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHH
Confidence            999999999999999999999998741                                                     


Q ss_pred             --------------------------------eeeEEEcCCCeEEEEEEeCCCCccCCCCe---EEEEecch
Q 012955          100 --------------------------------ADMDVETFYDGILAAIVVPEGESAPVGAA---IGILAETE  136 (452)
Q Consensus       100 --------------------------------~~~ev~ap~~G~l~~i~v~~G~~v~~G~~---l~~i~~~~  136 (452)
                                                      ....|+||++|+|.++.+.+|+.|..|++   |+.|.+.+
T Consensus       120 ~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~~~  191 (341)
T 3fpp_A          120 ATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMS  191 (341)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTSCCCCEEEECCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCCCceEEEEecCC
Confidence                                            11569999999999999999999999987   88886543

>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A

Probab=97.69  E-value=5.3e-05  Score=65.44  Aligned_cols=61  Identities=21%  Similarity=0.128  Sum_probs=47.8

Q ss_pred             EEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCC---cc---CCCC-eEEEEe
Q 012955           73 GKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGE---SA---PVGA-AIGILA  133 (452)
Q Consensus        73 g~I~~w~v-~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~---~v---~~G~-~l~~i~  133 (452)
                      |.|+.+.. ++|+.|++||.++.||++|+..+|.||.+|+|.++.....+   .+   +.|+ =|+.|.
T Consensus        32 Gdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~~P~liN~dpy~~gWl~ki~  100 (125)
T 3klr_A           32 GDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMT  100 (125)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTTCTTHHHHCTTTTTCCEEEE
T ss_pred             CCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhhChHhhcCCCCCCceEEEEE
Confidence            56666655 79999999999999999999999999999999998654433   22   3454 366654

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=97.59  E-value=3.2e-05  Score=78.32  Aligned_cols=64  Identities=19%  Similarity=0.279  Sum_probs=56.1

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCce---------------------------------------------------
Q 012955           72 EGKIVSWIKSEGDVLSKGESVVVVESDKA---------------------------------------------------  100 (452)
Q Consensus        72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~---------------------------------------------------  100 (452)
                      .|+|.+|+|++||.|++||+|++++....                                                   
T Consensus        51 ~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~~  130 (369)
T 1vf7_A           51 NGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVEQ  130 (369)
T ss_dssp             CEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence            39999999999999999999999986321                                                   


Q ss_pred             ------eeEEEcCCCeEEEEEEeCCCCccCCC--CeEEEEecc
Q 012955          101 ------DMDVETFYDGILAAIVVPEGESAPVG--AAIGILAET  135 (452)
Q Consensus       101 ------~~ev~ap~~G~l~~i~v~~G~~v~~G--~~l~~i~~~  135 (452)
                            ...|+||++|+|.++.+++|+.|..|  ++|+.|.+.
T Consensus       131 a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~~~  173 (369)
T 1vf7_A          131 ARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQQL  173 (369)
T ss_dssp             HHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEECC
T ss_pred             HHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEecC
Confidence                  25899999999999999999999995  899988653

>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}

Probab=97.54  E-value=0.00012  Score=64.61  Aligned_cols=76  Identities=26%  Similarity=0.229  Sum_probs=53.2

Q ss_pred             eEEEEcCCCCCCCceEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCc------cCCCC-eE
Q 012955           58 IREIFMPALSSTMTEGKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGES------APVGA-AI  129 (452)
Q Consensus        58 ~~~i~~P~l~~~~~eg~I~~w~v-~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~------v~~G~-~l  129 (452)
                      ...|-+-+.... .-|.|+-+.. ++|+.|++||.++.||++|+..+|.||.+|+|.++.-...+.      -+.|+ =|
T Consensus        40 ~~~VGITd~Aq~-~LGdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d~PeliN~dPy~~GWl  118 (143)
T 3mxu_A           40 VVTVGITDYAQE-QLGDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAESPELVNQKAETEGWL  118 (143)
T ss_dssp             EEEEEECHHHHH-HHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHSTTTTTCC
T ss_pred             EEEEeeCHHHHh-hcCCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhhChHhhhCCCCCCCeE
Confidence            444544443221 1355665544 899999999999999999999999999999999987544332      14443 56


Q ss_pred             EEEec
Q 012955          130 GILAE  134 (452)
Q Consensus       130 ~~i~~  134 (452)
                      +.|..
T Consensus       119 ~ki~~  123 (143)
T 3mxu_A          119 WKMTV  123 (143)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            66654

>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}

Probab=97.50  E-value=0.00011  Score=64.28  Aligned_cols=44  Identities=30%  Similarity=0.293  Sum_probs=38.7

Q ss_pred             EEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEE
Q 012955           73 GKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV  116 (452)
Q Consensus        73 g~I~~w~v-~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~  116 (452)
                      |.|+-+.. ++|++|++||.++.||++|+..+|.||.+|+|.++.
T Consensus        49 Gdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN   93 (137)
T 3tzu_A           49 GDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVN   93 (137)
T ss_dssp             CSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEEC
T ss_pred             CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEeh
Confidence            45555544 899999999999999999999999999999998874

>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A

Probab=97.19  E-value=0.00052  Score=61.17  Aligned_cols=44  Identities=25%  Similarity=0.264  Sum_probs=38.5

Q ss_pred             EEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEE
Q 012955           73 GKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV  116 (452)
Q Consensus        73 g~I~~w~v-~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~  116 (452)
                      |.|+-+.. ++|+.|++||.++.||+.|+..+|.||.+|.|.++.
T Consensus        59 GdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN  103 (155)
T 3hgb_A           59 GDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVN  103 (155)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEEC
T ss_pred             CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEh
Confidence            45555443 799999999999999999999999999999998875

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=97.06  E-value=2.4e-05  Score=78.60  Aligned_cols=63  Identities=22%  Similarity=0.332  Sum_probs=54.3

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCce---------------------------------------------------
Q 012955           72 EGKIVSWIKSEGDVLSKGESVVVVESDKA---------------------------------------------------  100 (452)
Q Consensus        72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~---------------------------------------------------  100 (452)
                      .|+|.+|+|++||.|++||+|++++....                                                   
T Consensus        40 ~G~V~~v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~  119 (369)
T 4dk0_A           40 SGKITKLYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNT  119 (369)
T ss_dssp             CSBCCEECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHH
T ss_pred             CcEEEEEEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHH
Confidence            39999999999999999999999986420                                                   


Q ss_pred             ----------------------------------eeEEEcCCCeEEEEEEeCCCCccCCCCe---EEEEec
Q 012955          101 ----------------------------------DMDVETFYDGILAAIVVPEGESAPVGAA---IGILAE  134 (452)
Q Consensus       101 ----------------------------------~~ev~ap~~G~l~~i~v~~G~~v~~G~~---l~~i~~  134 (452)
                                                        ...|+||++|+|.++.+++|+.|..|++   |+.|.+
T Consensus       120 a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~  190 (369)
T 4dk0_A          120 AKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQTVNSNQTTPTIIKVAD  190 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCBCCTTTSCCCCBBCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCCccCCCCcceEEEEcC
Confidence                                              1359999999999999999999999998   666644

>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}

Probab=96.68  E-value=0.0034  Score=62.77  Aligned_cols=59  Identities=15%  Similarity=0.195  Sum_probs=50.3

Q ss_pred             EEEEEcCCCCeecCCCeEEEEEe----CceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955           75 IVSWIKSEGDVLSKGESVVVVES----DKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus        75 I~~w~v~~Gd~V~~gd~l~~vet----dK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      +++.+++.||.|++||+|++|..    .....+|+||++|+|...  ...-.|..|+.|+.|...
T Consensus       267 l~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~--~~~~~V~~G~~l~~Ia~~  329 (331)
T 3na6_A          267 LFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISR--HFPGMIKSGDCAAVIGVV  329 (331)
T ss_dssp             EEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEE--ECSSEECTTCEEEEEECB
T ss_pred             EEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEE--eCCCccCCCCEEEEEecc
Confidence            77889999999999999999997    356789999999999554  446788899999998653

>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}

Probab=96.55  E-value=0.0046  Score=62.29  Aligned_cols=60  Identities=20%  Similarity=0.238  Sum_probs=52.6

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVES----DKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vet----dK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      | +++..++.||.|++||+|+.|+.    .++..+|.||++|+|..+  .....|..|+.|+.|...
T Consensus       276 G-~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~--~~~~~V~~Gd~l~~ia~~  339 (354)
T 3cdx_A          276 G-LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFG--AGPGRVTRGDAVAVVMED  339 (354)
T ss_dssp             E-EEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEE--ECSSEECTTCEEEEEEEE
T ss_pred             E-EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEE--eCCCccCCCCEEEEEeee
Confidence            5 78888999999999999999997    588899999999999644  578889999999998643

>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*

Probab=96.41  E-value=0.0064  Score=61.65  Aligned_cols=59  Identities=12%  Similarity=0.102  Sum_probs=50.9

Q ss_pred             EEEEEEcCCCCeecCCCeEEEEEe------CceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955           74 KIVSWIKSEGDVLSKGESVVVVES------DKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE  134 (452)
Q Consensus        74 ~I~~w~v~~Gd~V~~gd~l~~vet------dK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~  134 (452)
                      =|++..++.||.|++||+|++|..      .....+|.||.+|+|.  .....-.|..|+.|+.|..
T Consensus       299 Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi--~~~~~p~V~~G~~l~~i~~  363 (368)
T 3fmc_A          299 GMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPI--LHFASASVHQGTELYKVMT  363 (368)
T ss_dssp             EEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEE--EECSSSEECTTCEEEEEEE
T ss_pred             EEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEE--EEeCCCccCCCCEEEEEee
Confidence            366799999999999999999997      5678899999999994  5566688999999998864

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.33  E-value=0.0014  Score=54.00  Aligned_cols=46  Identities=15%  Similarity=0.225  Sum_probs=41.8

Q ss_pred             CCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955           89 GESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE  134 (452)
Q Consensus        89 gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~  134 (452)
                      |..+|.++.++-...|.||..|+|.++++++|+.|..|++|+.++.
T Consensus         5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le~   50 (100)
T 2dn8_A            5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEV   50 (100)
T ss_dssp             CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEE
T ss_pred             CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEEe
Confidence            4556888888888899999999999999999999999999999974

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=95.74  E-value=0.009  Score=45.38  Aligned_cols=33  Identities=24%  Similarity=0.322  Sum_probs=30.4

Q ss_pred             EEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955          103 DVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus       103 ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      +|.||.+|+|.++++++|+.|..|++|+.++..
T Consensus         1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~   33 (72)
T 1z6h_A            1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILESM   33 (72)
T ss_dssp             CEECCSSEEEEEECCCTTCEECTTCEEEEEEET
T ss_pred             CEECcccEEEEEEEcCCcCEECCCCEEEEEECC
Confidence            378999999999999999999999999999764

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=95.64  E-value=0.01  Score=45.72  Aligned_cols=35  Identities=20%  Similarity=0.423  Sum_probs=32.0

Q ss_pred             eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus       101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      ...|.|+.+|+|.++++++|+.|..|++|+.++..
T Consensus         8 ~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~~~   42 (77)
T 1dcz_A            8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAM   42 (77)
T ss_dssp             SSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEET
T ss_pred             CeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEEcc
Confidence            45789999999999999999999999999999763

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=95.62  E-value=0.013  Score=44.53  Aligned_cols=34  Identities=21%  Similarity=0.275  Sum_probs=31.3

Q ss_pred             eEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955          102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus       102 ~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      ..|.||.+|+|.++++++|+.|..|++|+.++..
T Consensus         6 ~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~   39 (74)
T 2d5d_A            6 NVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAM   39 (74)
T ss_dssp             CEEECSSCEEEEEECCCTTCEECTTCEEEEEEET
T ss_pred             eEEecCCCEEEEEEEcCCCCEeCCCCEEEEEecc
Confidence            4689999999999999999999999999999753

>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A

Probab=95.23  E-value=0.016  Score=52.02  Aligned_cols=64  Identities=27%  Similarity=0.436  Sum_probs=54.7

Q ss_pred             EEEcCCCCCCCceEEEEEEEcCCCCeecC----CCeEEEEEeCceeeEEEcCCCeEEEEE--------------------
Q 012955           60 EIFMPALSSTMTEGKIVSWIKSEGDVLSK----GESVVVVESDKADMDVETFYDGILAAI--------------------  115 (452)
Q Consensus        60 ~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~----gd~l~~vetdK~~~ev~ap~~G~l~~i--------------------  115 (452)
                      .|.-| +     .|+|+.+. +..|.+-.    |+.++...++   ..+.||++|+|..+                    
T Consensus        14 ~i~aP-~-----~G~vv~l~-~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiH   83 (161)
T 1f3z_A           14 EIIAP-L-----SGEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVH   83 (161)
T ss_dssp             EEECS-S-----CEEEEEGG-GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EEEec-C-----CeEEEEeE-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEE
Confidence            46666 3     39999976 78898776    8999988876   47899999999988                    


Q ss_pred             ---------------EeCCCCccCCCCeEEEEe
Q 012955          116 ---------------VVPEGESAPVGAAIGILA  133 (452)
Q Consensus       116 ---------------~v~~G~~v~~G~~l~~i~  133 (452)
                                     ++++||.|..|++|+.+.
T Consensus        84 iGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d  116 (161)
T 1f3z_A           84 FGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFD  116 (161)
T ss_dssp             CSBSGGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred             ECccchhcCCCccEEEEeCcCEECCCCEEEEEC
Confidence                           899999999999999994

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=95.12  E-value=0.019  Score=47.96  Aligned_cols=34  Identities=12%  Similarity=0.303  Sum_probs=32.0

Q ss_pred             eEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955          102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus       102 ~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      +.|.|+.+|+|.++++++|+.|..|++|+.|+..
T Consensus         2 ~~v~a~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~   35 (116)
T 2k32_A            2 VIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQD   35 (116)
T ss_dssp             EEECCSSCEEEEEECSCTTSEECTTCEEEEEECT
T ss_pred             eEEeCcCCEEEEEEECCCcCEECCCCEEEEECHH
Confidence            5789999999999999999999999999999865

>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}

Probab=94.88  E-value=0.045  Score=54.38  Aligned_cols=60  Identities=20%  Similarity=0.176  Sum_probs=49.0

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVES----DKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE  134 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vet----dK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~  134 (452)
                      +-+....++.||.|++||+|+++-.    .+...+|.||++|+|.-  ....-.|..|+.|+.|..
T Consensus       265 ~G~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~--~~~~p~V~~Gd~l~~ia~  328 (332)
T 2qj8_A          265 PGIFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFA--IRSAMYVQGNEEVAILAR  328 (332)
T ss_dssp             SEEEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEE--EECSEEECTTCEEEEEEE
T ss_pred             CeEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEE--EeCCCeeCCCCEEEEEee
Confidence            3456688999999999999999965    56788999999999944  445667888999988854

>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1

Probab=94.68  E-value=0.023  Score=50.65  Aligned_cols=65  Identities=17%  Similarity=0.288  Sum_probs=54.4

Q ss_pred             EEEEcCCCCCCCceEEEEEEEcCCCCeecC----CCeEEEEEeCceeeEEEcCCCeEEEE--------------------
Q 012955           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSK----GESVVVVESDKADMDVETFYDGILAA--------------------  114 (452)
Q Consensus        59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~----gd~l~~vetdK~~~ev~ap~~G~l~~--------------------  114 (452)
                      ..|.-| +     .|+|+.+. ++.|.+-.    |+.++...++   ..+.||++|+|..                    
T Consensus         8 ~~i~aP-~-----~G~vv~l~-~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLi   77 (154)
T 2gpr_A            8 LKVLAP-C-----DGTIITLD-EVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILL   77 (154)
T ss_dssp             EEEECS-S-----SEEEECGG-GSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEE
T ss_pred             CEEEec-C-----CeEEEEee-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEE
Confidence            346666 3     39999975 88998776    8999988876   5899999999987                    


Q ss_pred             ---------------EEeCCCCccCCCCeEEEEe
Q 012955          115 ---------------IVVPEGESAPVGAAIGILA  133 (452)
Q Consensus       115 ---------------i~v~~G~~v~~G~~l~~i~  133 (452)
                                     +++++||.|..|++|+.+.
T Consensus        78 HiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d  111 (154)
T 2gpr_A           78 HIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVD  111 (154)
T ss_dssp             ECSSSGGGGTTCSEEECCCTTCEECTTCEEEEEC
T ss_pred             EECcchhhcCCCceEEEEcCCCEEcCCCEEEEEC
Confidence                           4899999999999999995

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=94.52  E-value=0.019  Score=45.55  Aligned_cols=33  Identities=15%  Similarity=0.205  Sum_probs=30.9

Q ss_pred             eEEEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955          102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAE  134 (452)
Q Consensus       102 ~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~  134 (452)
                      ..|.||.+|+|.++++++|+.|..|++|+.++.
T Consensus         6 ~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie~   38 (84)
T 2kcc_A            6 TVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEV   38 (84)
T ss_dssp             TEECCSSSCCEEEESSCTTEEECTTCEEEEEEC
T ss_pred             ceEECCCCEEEEEEECCCCCEECCCCEEEEEEe
Confidence            469999999999999999999999999999974

>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A

Probab=94.41  E-value=0.022  Score=51.23  Aligned_cols=58  Identities=19%  Similarity=0.254  Sum_probs=50.5

Q ss_pred             eEEEEEEEcCCCCeecC----CCeEEEEEeCceeeEEEcCCCeEEEEE--------------------------------
Q 012955           72 EGKIVSWIKSEGDVLSK----GESVVVVESDKADMDVETFYDGILAAI--------------------------------  115 (452)
Q Consensus        72 eg~I~~w~v~~Gd~V~~----gd~l~~vetdK~~~ev~ap~~G~l~~i--------------------------------  115 (452)
                      .|+|+.+ .++.|.+-.    |+.++...+   ...++||++|+|..+                                
T Consensus        20 ~G~vv~l-~~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~g   95 (162)
T 1ax3_A           20 TGEIHPI-TDVPDQVFSGKMMGDGFAILPS---EGIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGEG   95 (162)
T ss_dssp             SEEEEEG-GGSSSHHHHTCTTSEEEEEEEC---SSEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTTT
T ss_pred             ceEEEEe-EECCCccccccceeceEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCCc
Confidence            4999997 788888766    899998876   347899999999988                                


Q ss_pred             ---EeCCCCccCCCCeEEEEe
Q 012955          116 ---VVPEGESAPVGAAIGILA  133 (452)
Q Consensus       116 ---~v~~G~~v~~G~~l~~i~  133 (452)
                         ++++||.|..|++|+.+.
T Consensus        96 F~~~V~~Gd~V~~G~~L~~~d  116 (162)
T 1ax3_A           96 FTSFVSEGDRVEPGQKLLEVD  116 (162)
T ss_dssp             EEESCCCCSEECSEEEEEEEC
T ss_pred             cEEEEeCCCEEcCCCEEEEEC
Confidence               889999999999999995

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=94.24  E-value=0.066  Score=51.18  Aligned_cols=55  Identities=13%  Similarity=0.067  Sum_probs=40.7

Q ss_pred             CCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955           81 SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus        81 ~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      +.|+.-..=..-+.|+.. -...|.++.+|+|.++++++|+.|..|++|+.|+..+
T Consensus         3 ~~~~~~~~v~~~G~v~~~-~~~~v~a~~~G~V~~v~v~~G~~V~kGq~L~~ld~~~   57 (277)
T 2f1m_A            3 KTEPLQITTELPGRTSAY-RIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPAT   57 (277)
T ss_dssp             -------CCEEEEEEECS-EEEEECCSSCEEEEEECSCTTCEECTTSCSEEECCHH
T ss_pred             eeeccceEEEEEEEEEee-eEEEEEccccEEEEEEEcCCCCEecCCCEEEEECcHH
Confidence            334444444556677765 4678999999999999999999999999999997654

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=93.53  E-value=0.038  Score=44.73  Aligned_cols=35  Identities=17%  Similarity=0.346  Sum_probs=31.5

Q ss_pred             eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus       101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      ...|.||.+|+|.++++++|+.|..|++|+.++..
T Consensus        25 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~   59 (94)
T 2jku_A           25 SSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAM   59 (94)
T ss_dssp             CCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC-
T ss_pred             ceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecc
Confidence            45689999999999999999999999999999764

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=93.38  E-value=0.047  Score=44.58  Aligned_cols=35  Identities=11%  Similarity=0.231  Sum_probs=31.7

Q ss_pred             eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus       101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      ...|.++..|+|.++++++|+.|..|++|+.|+..
T Consensus        14 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~   48 (99)
T 2ejm_A           14 QGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAM   48 (99)
T ss_dssp             CSSCBCSSSEEEEEECCCTTEEECSSCEEEEEESS
T ss_pred             ceEEecCCCEEEEEEECCCCCEECCCCEEEEEEcc
Confidence            45688999999999999999999999999999753

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=93.08  E-value=0.059  Score=41.83  Aligned_cols=34  Identities=18%  Similarity=0.223  Sum_probs=31.0

Q ss_pred             eEEEcCCCeEEEEE-------EeCCCCccCCCCeEEEEecc
Q 012955          102 MDVETFYDGILAAI-------VVPEGESAPVGAAIGILAET  135 (452)
Q Consensus       102 ~ev~ap~~G~l~~i-------~v~~G~~v~~G~~l~~i~~~  135 (452)
                      ..|.||..|+|.++       ++++|+.|..|++|+.++..
T Consensus         5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~   45 (80)
T 1bdo_A            5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAM   45 (80)
T ss_dssp             EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEET
T ss_pred             eEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEec
Confidence            46899999999998       89999999999999999763

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=92.99  E-value=0.088  Score=48.44  Aligned_cols=32  Identities=13%  Similarity=0.227  Sum_probs=26.6

Q ss_pred             EEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEE
Q 012955           77 SWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAA  114 (452)
Q Consensus        77 ~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~  114 (452)
                      .++|++|+.|++||.||+-.      .|-+..+|+|..
T Consensus        22 ~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d   53 (193)
T 2xha_A           22 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVD   53 (193)
T ss_dssp             EESCCTTCEECTTCEEEEEC------CEECSSCEEEEE
T ss_pred             EEEECCCCEEcCCCEEEEeC------cEEEccCEEEEe
Confidence            57999999999999999754      777888887743

>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}

Probab=92.61  E-value=0.12  Score=46.18  Aligned_cols=45  Identities=29%  Similarity=0.266  Sum_probs=40.1

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeE-EEcCCCeEEEEEE
Q 012955           72 EGKIVSWIKSEGDVLSKGESVVVVESDKADMD-VETFYDGILAAIV  116 (452)
Q Consensus        72 eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~e-v~ap~~G~l~~i~  116 (452)
                      ||.-+-..+.+||.|.+||.|+-|.|.|-++- ++||++|+|.-+.
T Consensus       108 eG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~  153 (169)
T 3d4r_A          108 EGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMN  153 (169)
T ss_dssp             CSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEE
T ss_pred             CceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEE
Confidence            57777888999999999999999999998765 9999999997665

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=92.59  E-value=0.069  Score=52.99  Aligned_cols=56  Identities=13%  Similarity=0.159  Sum_probs=44.7

Q ss_pred             CCCCeecCCCeEEEEEeC-ceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955           81 SEGDVLSKGESVVVVESD-KADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus        81 ~~Gd~V~~gd~l~~vetd-K~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      +.|+.-..-..-+.|+.+ .-...|.++.+|+|.++++++|+.|..|++|+.|+..+
T Consensus        36 ~~~~~~~~~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~~~   92 (359)
T 3lnn_A           36 TRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSAD   92 (359)
T ss_dssp             EEEEECCEEEEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEECSS
T ss_pred             eecccceeEEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEEChHH
Confidence            333333344556677765 67889999999999999999999999999999998654

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=92.46  E-value=0.11  Score=51.14  Aligned_cols=57  Identities=18%  Similarity=0.264  Sum_probs=43.7

Q ss_pred             EcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955           79 IKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus        79 ~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      .++.|+.-..=..-+.|+.. -...|.++.+|+|.++++++|+.|+.|++|+.|+..+
T Consensus        10 ~v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~~   66 (341)
T 3fpp_A           10 IVRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQ   66 (341)
T ss_dssp             ---CCCCCCEEEEEEEEEES-SEEECCCSSCEEEEEECCCTTCEECTTCEEEEECCHH
T ss_pred             EEEEeceeEEEEEEEEEEee-EEEEEeccCCcEEEEEEeCCCCEECCCCEEEEEChHH
Confidence            34555554444556677765 4678999999999999999999999999999997654

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=91.20  E-value=0.19  Score=38.54  Aligned_cols=26  Identities=31%  Similarity=0.630  Sum_probs=24.4

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEe
Q 012955           72 EGKIVSWIKSEGDVLSKGESVVVVES   97 (452)
Q Consensus        72 eg~I~~w~v~~Gd~V~~gd~l~~vet   97 (452)
                      .|+|.++++++||.|..|++|+.|++
T Consensus        52 ~G~v~~~~v~~G~~v~~g~~l~~i~~   77 (77)
T 2l5t_A           52 RGKIVKILYREGQVVPVGSTLLQIDT   77 (77)
T ss_dssp             CEEEEEECCCTTCEECSCSEEEEEEC
T ss_pred             CEEEEEEEeCCcCEECCCCEEEEEEC
Confidence            49999999999999999999999874

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=91.07  E-value=0.2  Score=38.68  Aligned_cols=28  Identities=7%  Similarity=0.176  Sum_probs=25.8

Q ss_pred             CeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955          109 DGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus       109 ~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      +|+|.++++++|+.|..|++|+.++...
T Consensus        14 ~G~v~~~~v~~G~~V~~G~~l~~ie~~~   41 (80)
T 1qjo_A           14 EVEVTEVMVKVGDKVAAEQSLITVEGDK   41 (80)
T ss_dssp             CEEEEECCCCTTCEECBTSEEEEEESSS
T ss_pred             CEEEEEEEcCCCCEECCCCEEEEEEcCC
Confidence            8999999999999999999999997643

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=90.87  E-value=0.18  Score=39.09  Aligned_cols=31  Identities=16%  Similarity=0.134  Sum_probs=28.0

Q ss_pred             EcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955          105 ETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus       105 ~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      -++..|.|.++++++|+.|..|++|+.++..
T Consensus        11 g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~   41 (81)
T 1gjx_A           11 GGHENVDIIAVEVNVGDTIAVDDTLITLETD   41 (81)
T ss_dssp             SSCSSEEEEEECCCSSCBCCSSCCCEEEECS
T ss_pred             CCCCcEEEEEEEcCCCCEECCCCEEEEEEeC
Confidence            3568999999999999999999999999754

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=90.30  E-value=0.23  Score=49.78  Aligned_cols=46  Identities=15%  Similarity=0.138  Sum_probs=38.4

Q ss_pred             CeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955           90 ESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus        90 d~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      ..-+.|+.. -...|.++.+|+|.++++++|+.|..|++|+.|+..+
T Consensus        33 ~~~G~v~~~-~~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~~~   78 (369)
T 1vf7_A           33 ELPGRTNAF-RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPAT   78 (369)
T ss_dssp             EEEEECEES-CEEEECCSSCEEEEECCSCSSEEECTTSEEEEECCHH
T ss_pred             EEEEEEEee-eEEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECcHH
Confidence            344566654 3578999999999999999999999999999997654

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=90.28  E-value=0.29  Score=39.36  Aligned_cols=29  Identities=14%  Similarity=0.110  Sum_probs=26.2

Q ss_pred             CCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955          107 FYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus       107 p~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      ...|+|.++++++||.|..|++|+.++..
T Consensus        16 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~   44 (93)
T 1k8m_A           16 IREVTVKEWYVKEGDTVSQFDSICEVQSD   44 (93)
T ss_dssp             SCCEEEEEECCCTTCEECSSSCCEEEECS
T ss_pred             CCCEEEEEEEcCCcCEECCCCEEEEEEcC
Confidence            35899999999999999999999999753

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=90.20  E-value=0.22  Score=39.40  Aligned_cols=29  Identities=14%  Similarity=0.138  Sum_probs=26.3

Q ss_pred             CCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955          107 FYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus       107 p~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      ...|+|.++++++|+.|..|++|+.++..
T Consensus        17 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~   45 (87)
T 3crk_C           17 MTMGTVQRWEKKVGEKLSEGDLLAEIETD   45 (87)
T ss_dssp             CCEEEEEEECSCTTCEECTTCEEEEEECS
T ss_pred             CCcEEEEEEEcCCCCEEcCCCEEEEEECC
Confidence            35899999999999999999999999754

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=90.17  E-value=0.12  Score=40.04  Aligned_cols=30  Identities=20%  Similarity=0.185  Sum_probs=27.0

Q ss_pred             cCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955          106 TFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus       106 ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      ++..|+|.++++++|+.|..|++|+.++..
T Consensus        12 ~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~   41 (79)
T 1ghj_A           12 SIADGTVATWHKKPGEAVKRDELIVDIETD   41 (79)
T ss_dssp             SCSCEEECCCSSCTTSEECSSCEEEEEECS
T ss_pred             CCCCEEEEEEEcCCCCEECCCCEEEEEEcc
Confidence            456999999999999999999999999753

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=90.15  E-value=0.26  Score=50.32  Aligned_cols=55  Identities=13%  Similarity=0.080  Sum_probs=41.7

Q ss_pred             CCCeecCCCeEEEEEeC-ceeeEEEcCCCeEEEEEEe-CCCCccCCCCeEEEEecch
Q 012955           82 EGDVLSKGESVVVVESD-KADMDVETFYDGILAAIVV-PEGESAPVGAAIGILAETE  136 (452)
Q Consensus        82 ~Gd~V~~gd~l~~vetd-K~~~ev~ap~~G~l~~i~v-~~G~~v~~G~~l~~i~~~~  136 (452)
                      .|+.-..=...+.|+.| .-...|.++.+|+|.++++ ++||.|..|++|+.|+..+
T Consensus       101 ~~~~~~~v~~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~  157 (413)
T 3ne5_B          101 RGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPD  157 (413)
T ss_dssp             EECCEEEEEEEEEEEEEEEEEEEECCSSCEEEEEECSCCTTCEECTTCEEEEEECCS
T ss_pred             EeecceEEEEEEEEEECCCceEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEcCHH
Confidence            33333333445566643 4568899999999999998 9999999999999998543

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=90.06  E-value=0.02  Score=45.30  Aligned_cols=34  Identities=9%  Similarity=0.060  Sum_probs=30.4

Q ss_pred             eEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955          102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus       102 ~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      ++|.+|.-|+|.++++++|+.|..|++|+.++..
T Consensus         3 ~~i~~p~~G~v~~~~v~~Gd~V~~G~~L~~ie~~   36 (85)
T 2k7v_A            3 KEVNVPDIVEVTEVMVKVGDKVAAEQSLITVEGD   36 (85)
T ss_dssp             SCCCCCSCCCCCSCCCSSSCCCCCSSSCCCCSCC
T ss_pred             cEEECCCeEEEEEEEcCCCCEEcCCCEEEEEEcc
Confidence            4677888899999999999999999999999754

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.96  E-value=0.24  Score=40.37  Aligned_cols=28  Identities=21%  Similarity=0.347  Sum_probs=25.8

Q ss_pred             CCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955          108 YDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus       108 ~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      ..|+|.++++++||.|..|++|+.++..
T Consensus        20 ~~G~i~~~~v~~Gd~V~~G~~L~~ie~~   47 (98)
T 2dnc_A           20 EEGNIVKWLKKEGEAVSAGDALCEIETD   47 (98)
T ss_dssp             SEECEEEESSCTTCEECTTSEEEEEECS
T ss_pred             ccEEEEEEEcCCCCEeCCCCEEEEEEcc
Confidence            4799999999999999999999999754

>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}

Probab=89.62  E-value=0.3  Score=49.05  Aligned_cols=31  Identities=13%  Similarity=0.237  Sum_probs=25.5

Q ss_pred             EEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEE
Q 012955           77 SWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILA  113 (452)
Q Consensus        77 ~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~  113 (452)
                      .++|++||.|++||.||+-.      .|-+..+|+|.
T Consensus        62 ~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~   92 (352)
T 2xhc_A           62 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIV   92 (352)
T ss_dssp             EESCCTTCEECTTCEEEEEC------CEECSSCEEEE
T ss_pred             EEEecCCCEEcCCCEEEEec------cEEEecceEEE
Confidence            68999999999999999964      66677777664

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=89.41  E-value=0.27  Score=40.82  Aligned_cols=28  Identities=21%  Similarity=0.247  Sum_probs=25.8

Q ss_pred             CCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955          108 YDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus       108 ~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      ..|+|.++++++||.|..|++|++|+..
T Consensus        20 ~~G~v~~~~v~~Gd~V~~G~~L~~iE~~   47 (108)
T 2dne_A           20 QAGTIARWEKKEGDKINEGDLIAEVETD   47 (108)
T ss_dssp             CEEEEEECSSCTTCEECTTSEEEEEECS
T ss_pred             ccEEEEEEEcCCCCEecCCCEEEEEEcC
Confidence            5799999999999999999999999754

>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}

Probab=89.38  E-value=0.38  Score=44.14  Aligned_cols=45  Identities=24%  Similarity=0.321  Sum_probs=39.1

Q ss_pred             EEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCcc
Q 012955           77 SWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESA  123 (452)
Q Consensus        77 ~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v  123 (452)
                      .++|++||.|++||.||+.  |..+..|-+..+|+|.-..+.+|.++
T Consensus        63 ~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t~  107 (190)
T 2auk_A           63 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQTI  107 (190)
T ss_dssp             EESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTTE
T ss_pred             EEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcce
Confidence            6799999999999999977  89999999999999976666666543

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=87.14  E-value=0.62  Score=39.97  Aligned_cols=29  Identities=14%  Similarity=0.133  Sum_probs=26.1

Q ss_pred             CCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955          108 YDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus       108 ~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      ..|+|.++++++||.|..|++|++|+...
T Consensus        40 ~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K   68 (128)
T 1y8o_B           40 TMGTVQRWEKKVGEKLSEGDLLAEIETDK   68 (128)
T ss_dssp             SEEEEEEECSCTTCEECTTCEEEEEECSS
T ss_pred             ccEEEEEEecCCCCEecCCCEEEEEEcCc
Confidence            57999999999999999999999997543

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=87.14  E-value=0.38  Score=37.05  Aligned_cols=35  Identities=26%  Similarity=0.387  Sum_probs=29.0

Q ss_pred             eEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 012955           58 IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESD   98 (452)
Q Consensus        58 ~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetd   98 (452)
                      ..+|.-|      ..|+|.++++++||.|..|++|+.|+..
T Consensus        41 ~~~i~Ap------~~G~v~~~~v~~G~~V~~g~~l~~i~~~   75 (79)
T 1iyu_A           41 SMEVPSP------KAGVVKSVSVKLGDKLKEGDAIIELEPA   75 (79)
T ss_dssp             EEEEECS------SSSEEEEESCCTTCEEETTSEEEEEECC
T ss_pred             EEEEECC------CCEEEEEEEeCCCCEECCCCEEEEEecC
Confidence            3566666      3489999999999999999999999753

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=86.92  E-value=0.16  Score=50.37  Aligned_cols=56  Identities=18%  Similarity=0.227  Sum_probs=44.1

Q ss_pred             cCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955           80 KSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus        80 v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      ++.|+.-..=..-+.|+.. -...|.++.+|+|.++++++|+.|+.|++|+.|+..+
T Consensus        12 v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~   67 (369)
T 4dk0_A           12 VKRGNIEKNVVATGSIESI-NTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDSTT   67 (369)
T ss_dssp             CCEECCCCCCEEEEEEECS-SCCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCCHH
T ss_pred             EEecceeEEEEEeEEEEee-eeEEEecCCCcEEEEEEECCCCEECCCCEEEEEcCHH
Confidence            4445554555556677744 4668999999999999999999999999999997654

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=85.07  E-value=0.16  Score=39.51  Aligned_cols=28  Identities=11%  Similarity=0.087  Sum_probs=25.8

Q ss_pred             CCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955          107 FYDGILAAIVVPEGESAPVGAAIGILAE  134 (452)
Q Consensus       107 p~~G~l~~i~v~~G~~v~~G~~l~~i~~  134 (452)
                      ...|+|.++++++||.|..|++|+.++.
T Consensus        14 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~   41 (80)
T 1pmr_A           14 VADATVATWHKKPGDAVVRDEVLVEIET   41 (80)
T ss_dssp             CSCEECCBCCCCTTCCBSSSCCBCBCCS
T ss_pred             CccEEEEEEECCCcCEECCCCEEEEEEc
Confidence            4689999999999999999999999965

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=84.29  E-value=0.33  Score=44.60  Aligned_cols=46  Identities=13%  Similarity=0.193  Sum_probs=34.1

Q ss_pred             cCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEE--------------------------E--EeCCCCccCCCCeEEE
Q 012955           80 KSEGDVLSKGESVVVVESDKADMDVETFYDGILAA--------------------------I--VVPEGESAPVGAAIGI  131 (452)
Q Consensus        80 v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~--------------------------i--~v~~G~~v~~G~~l~~  131 (452)
                      |++|++|+.||+|+   -   ...|-|..+|+|.-                          +  +|++||.|..|+.|+.
T Consensus        85 V~dG~~V~~GdvLA---K---d~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~V~~Ge~L~D  158 (193)
T 2xha_A           85 LRVGTKVKQGLPLS---K---NEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVKQGEMLAE  158 (193)
T ss_dssp             CCTTCEECTTSBSS---T---TSCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEECTTCEEEC
T ss_pred             cCCCCEEcCCCEEe---c---CCeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCEECCCCCccc
Confidence            89999999999988   2   23345566665531                          2  7889999999998874

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=83.57  E-value=0.88  Score=49.57  Aligned_cols=35  Identities=14%  Similarity=0.199  Sum_probs=32.0

Q ss_pred             eeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955          101 DMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus       101 ~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      ...|.||..|+|.++++++||.|..|++|++++..
T Consensus       612 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEam  646 (681)
T 3n6r_A          612 SKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIEAM  646 (681)
T ss_dssp             CSEEECCSCEEEEEECCCTTCEECTTCEEEEEECS
T ss_pred             CCeEECCCcEEEEEEEeCCCCEEcCCCEEEEEEec
Confidence            45699999999999999999999999999999753

>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1

Probab=83.10  E-value=1.8  Score=39.33  Aligned_cols=66  Identities=23%  Similarity=0.385  Sum_probs=50.6

Q ss_pred             EEEEcCCCCCCCceEEEEEEEcCCCCeec----CCCeEEEEEeCceeeEEEcCCCeEEEEE-------------------
Q 012955           59 REIFMPALSSTMTEGKIVSWIKSEGDVLS----KGESVVVVESDKADMDVETFYDGILAAI-------------------  115 (452)
Q Consensus        59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~----~gd~l~~vetdK~~~ev~ap~~G~l~~i-------------------  115 (452)
                      ..|.-| +     .|+++.+. ++-|.|=    -||-++..=++-   .|-||++|+|..+                   
T Consensus        35 ~~i~aP-v-----~G~vi~L~-eV~D~vFs~~~mGdG~AI~P~~g---~v~AP~dG~V~~vfpT~HAigi~s~~G~EvLI  104 (183)
T 3our_B           35 IEIIAP-L-----SGEIVNIE-DVPDVVFAEKIVGDGIAIKPTGN---KMVAPVNGTIGKIFETNHAFSIESDDGVELFV  104 (183)
T ss_dssp             EEEECS-S-----CEEEEEGG-GSSCHHHHTTSSCEEEEEEECSS---EEECSSSEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eEEEee-c-----ceEEEEch-hCcChHhcccCccCeEEEEcCCC---EEEeCCCeEEEEECCCCCEEEEEeCCCCEEEE
Confidence            456666 3     38888654 6667652    288888776654   7889999999887                   


Q ss_pred             ----------------EeCCCCccCCCCeEEEEec
Q 012955          116 ----------------VVPEGESAPVGAAIGILAE  134 (452)
Q Consensus       116 ----------------~v~~G~~v~~G~~l~~i~~  134 (452)
                                      ++++||.|..|++|+.+.-
T Consensus       105 HIGiDTV~L~G~gF~~~V~~Gd~Vk~Gd~L~~fD~  139 (183)
T 3our_B          105 HFGIDTVELKGEGFTRIAEEGQTVKAGDTVIEFDL  139 (183)
T ss_dssp             ECSBSGGGGTTTTEEECSCTTCEECTTCEEEEECH
T ss_pred             EecccccccCCccceEEEeCcCEEcCCCEEEEECH
Confidence                            7899999999999999953

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	452
d1scza_	233	c.43.1.1 (A:) Dihydrolipoamide succinyltransferase	3e-35
d1q23a_	214	c.43.1.1 (A:) Chloramphenicol acetyltransferase, C	2e-29
d3claa_	213	c.43.1.1 (A:) Chloramphenicol acetyltransferase, C	8e-28
d1b5sa_	242	c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {	9e-24
d1pmra_	80	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	4e-22
d1y8ob1	102	b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoa	1e-21
d1k8ma_	87	b.84.1.1 (A:) Lipoyl domain of the mitochondrial b	5e-21
d1ghja_	79	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	2e-20
d1laba_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	4e-19
d1dpba_	243	c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {	8e-19
d1gjxa_	81	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	7e-14
d1qjoa_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	1e-13
d1iyua_	79	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	1e-12
d1w85i_	42	a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl	1e-10
d2cyua1	39	a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoa	1e-09
d1dcza_	77	b.84.1.1 (A:) Biotin carboxyl carrier domain of tr	6e-09

>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Length = 233

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

 Score =  128 bits (323), Expect = 3e-35
 Identities = 56/200 (28%), Positives = 93/200 (46%), Gaps = 10/200 (5%)

Query: 257 GSTVVPFTTMQAAVSKNMIESL-SVPTFRVGYPIITDALDAL-------YEKVKPKGVTM 308
               VP T ++  V++ ++E+  S         +    +  L       +EK     +  
Sbjct: 3   SEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGF 62

Query: 309 TALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLY 368
            +   KA   AL ++P VNAS  DG    Y+   ++++AV+   GL+TPVL+D D L + 
Sbjct: 63  MSFYVKAVVEALKRYPEVNASI-DGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMA 121

Query: 369 LLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKP 428
            + +K KEL  K R  +L   +   G FT++N G+FG      I+ P Q AI+ + A K 
Sbjct: 122 DIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIK- 180

Query: 429 TVVADADGFFGVKSKMLVSL 448
                 +G   +   M ++L
Sbjct: 181 DRPMAVNGQVEILPMMYLAL 200

>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 214

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

 Score =  112 bits (281), Expect = 2e-29
 Identities = 26/175 (14%), Positives = 47/175 (26%), Gaps = 15/175 (8%)

Query: 277 SLSVPTFRVGYPIITDALD--ALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGK 334
           S++  T+       T  LD  A  + VK              A  +  HP    + KDG+
Sbjct: 23  SVAQCTYN-----QTVQLDITAFLKTVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGE 77

Query: 335 SFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKAR-SKQLQPHEYNS 393
              ++ +++    V          L      D       + + V     +    P  +  
Sbjct: 78  LVIWD-SVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIE 136

Query: 394 GTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSL 448
             F +S         FD  +         V                 K  M +++
Sbjct: 137 NMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYTQG------DKVLMPLAI 185

>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 213

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

 Score =  107 bits (269), Expect = 8e-28
 Identities = 19/174 (10%), Positives = 46/174 (26%), Gaps = 12/174 (6%)

Query: 277 SLSVPTFRVGYPIITDALD--ALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGK 334
                 F      +T  +D   L + +         ++    A A+ Q   +  +     
Sbjct: 22  HRLPCGFS-----LTSKIDITTLKKSLDDSAYKFYPVMIYLIAQAVNQFDELRMAI-KDD 75

Query: 335 SFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSG 394
                 +++    V          L      D+      +  ++E+ +S      +  + 
Sbjct: 76  ELIVWDSVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVTP 135

Query: 395 TFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSL 448
              L N+       FD+                P +        G +  + +S+
Sbjct: 136 ENHL-NISALPWVNFDSFNLNVANFT---DYFAPIITMAKYQQEGDRLLLPLSV 185

>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 242

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 97.6 bits (242), Expect = 9e-24
 Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 14/217 (6%)

Query: 240 ALPKPAPAAAPAAPLLPGSTVVPFTTMQAAVSKNMIESL-SVPTFRVGYPIITDALDALY 298
           A  KPA             T    + ++ A++K M+ S  + P   +        L A  
Sbjct: 1   AAAKPATTEGEF-----PETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHR 55

Query: 299 EKVKPK------GVTMTALLAKAAAMALVQHPVVNASCKDG-KSFTYNANINIAVAVAIN 351
           +K K         +T    + KA   AL ++PV+N S  D  +        NI +A   +
Sbjct: 56  KKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTD 115

Query: 352 GGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDA 411
            GL+ PV++ AD+  ++ L+Q+  EL EKAR  +L P E    + T++N+G  G   F  
Sbjct: 116 RGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTP 175

Query: 412 ILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSL 448
           ++   + AI+ +G      +   DG       + +SL
Sbjct: 176 VINHPEVAILGIGRIAEKPIVR-DGEIVAAPMLALSL 211

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

 Score = 87.5 bits (217), Expect = 4e-22
 Identities = 23/75 (30%), Positives = 41/75 (54%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           +I +P L  ++ +  + +W K  GD + + E +V +E+DK  ++V    DGIL A++  E
Sbjct: 4   DILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDE 63

Query: 120 GESAPVGAAIGILAE 134
           G +      +G L E
Sbjct: 64  GTTVTSRQILGRLRE 78

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.3 bits (216), Expect = 1e-21
 Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 1/91 (1%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           ++ +PALS TMT G +  W K  G+ LS+G+ +  +E+DKA +  E   +G LA I+VPE
Sbjct: 7   QVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPE 66

Query: 120 G-ESAPVGAAIGILAETEAEVAQAKAKAASA 149
           G    P+G  + I+ E EA+++       + 
Sbjct: 67  GTRDVPLGTPLCIIVEKEADISAFADYRPTE 97

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.8 bits (210), Expect = 5e-21
 Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 56  SKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAI 115
            ++ +  +  +   + E  +  W   EGD +S+ +S+  V+SDKA + + + YDG++  +
Sbjct: 2   GQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKL 61

Query: 116 VVPEGESAPVGAAIGILAETEAE 138
                + A VG  +  + ETEA 
Sbjct: 62  YYNLDDIAYVGKPLVDI-ETEAL 83

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

 Score = 82.9 bits (205), Expect = 2e-20
 Identities = 24/75 (32%), Positives = 42/75 (56%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           +I  P    ++ +G + +W K  G+ + + E +V +E+DK  M+V    DG++A IV  E
Sbjct: 3   DIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNE 62

Query: 120 GESAPVGAAIGILAE 134
           G++   G  +G L E
Sbjct: 63  GDTVLSGELLGKLTE 77

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 79.4 bits (196), Expect = 4e-19
 Identities = 23/75 (30%), Positives = 41/75 (54%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           E  +P +   + EG+IV W    GD +++ + +  V++DKA +++ +   G +  I+VPE
Sbjct: 3   EFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPE 62

Query: 120 GESAPVGAAIGILAE 134
           G  A VG  +  L  
Sbjct: 63  GTVATVGQTLITLDA 77

>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 243

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 83.4 bits (205), Expect = 8e-19
 Identities = 57/198 (28%), Positives = 87/198 (43%), Gaps = 9/198 (4%)

Query: 259 TVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKPK------GVTMTAL 311
             VP T +    + N+  S L+VP            L+A     K         +T+  L
Sbjct: 16  EEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPL 75

Query: 312 LAKAAAMALVQHPVVNASC-KDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLL 370
           L KA A  L + P  N+S    G++      ++I  AV    GL+ PV+++ D+  L  L
Sbjct: 76  LLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQL 135

Query: 371 SQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTV 430
           + +  EL EKARSK+L         FT+S+LG  G   F  I+   + AI+ V  +    
Sbjct: 136 AAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQP 195

Query: 431 VADADGFFGVKSKMLVSL 448
           V D    F  +  + +SL
Sbjct: 196 VWD-GKAFQPRLMLPLSL 212

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Length = 81

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

 Score = 64.4 bits (157), Expect = 7e-14
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 60  EIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPE 119
           E+ +P +        I++   + GD ++  ++++ +E+DKA MDV     G++  + V  
Sbjct: 4   ELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKV 62

Query: 120 GESAPVGAAIGILAETEAE 138
           G+    G  I ++ E E  
Sbjct: 63  GDKISEGGLIVVV-EAEGT 80

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 63.7 bits (155), Expect = 1e-13
 Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 58  IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVV 117
           ++E+ +P +     E ++   +   GD ++  +S++ VE DKA M+V   + G++  + V
Sbjct: 2   VKEVNVPDIG--GDEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKV 59

Query: 118 PEGESAPVGAAIGILAETEAE 138
             G+    G+ I I  E E  
Sbjct: 60  NVGDKVKTGSLIMIF-EVEGA 79

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 61.0 bits (148), Expect = 1e-12
 Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 61  IFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEG 120
           I +P +     +G+++  +   GD++   + +VV+ES KA M+V +   G++ ++ V  G
Sbjct: 4   IRVPDI---GGDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLG 60

Query: 121 ESAPVGAAIGILAETEA 137
           +    G AI  L     
Sbjct: 61  DKLKEGDAIIELEPAAG 77

>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 42

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3/E1 binding domain of dihydrolipoyl acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 54.1 bits (131), Expect = 1e-10
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 185 KTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKA 223
           + +A P  +K  ++  VDI  V GTG  GR+  ED++  
Sbjct: 1   RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAF 39

>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Length = 39

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3-binding domain of dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 51.4 bits (124), Expect = 1e-09
 Identities = 16/35 (45%), Positives = 25/35 (71%)

Query: 189 TPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKA 223
           +P  ++LL +H +D +++ GTG  GR+T EDVEK 
Sbjct: 2   SPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKH 36

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Length = 77

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

 Score = 50.3 bits (120), Expect = 6e-09
 Identities = 14/60 (23%), Positives = 32/60 (53%)

Query: 73  GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL 132
           G +   +  EGD +  G++V+V+E+ K + ++    DG +  ++V E ++   G  +  +
Sbjct: 17  GTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	452
d1scza_	233	Dihydrolipoamide succinyltransferase {Escherichia	100.0
d1dpba_	243	Dihydrolipoamide acetyltransferase {Azotobacter vi	100.0
d1b5sa_	242	Dihydrolipoamide acetyltransferase {Bacillus stear	100.0
d1q23a_	214	Chloramphenicol acetyltransferase, CAT {Escherichi	99.96
d3claa_	213	Chloramphenicol acetyltransferase, CAT {Escherichi	99.95
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	99.89
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.87
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	99.87
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.85
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.82
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.81
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	99.8
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	99.77
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	99.62
d1w85i_	42	E3/E1 binding domain of dihydrolipoyl acetyltransf	99.53
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	99.46
d2cyua1	39	E3-binding domain of dihydrolipoamide succinyltran	99.44
d1onla_	127	Protein H of glycine cleavage system {Thermus ther	97.0
d1hpca_	131	Protein H of glycine cleavage system {Pea (Pisum s	96.96
d1vf7a_	237	Multidrug resistance protein MexA domain {Pseudomo	96.79
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	96.15
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	95.6
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	94.89
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	94.61
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	94.44
d1vf7a_	237	Multidrug resistance protein MexA domain {Pseudomo	94.32
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	93.06
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	90.27
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	89.46
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	88.68
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	88.55
d1brwa3	103	Pyrimidine nucleoside phosphorylase {Bacillus stea	86.02
d2f3ga_	150	Glucose-specific factor III (glsIII) {Escherichia	85.0
d1gpra_	158	Glucose permease IIa domain, IIa-glc {Bacillus sub	84.0
d1qpoa2	115	Quinolinic acid phosphoribosyltransferase (Nicotin	83.74
d2gpra_	154	Glucose permease IIa domain, IIa-glc {Mycoplasma c	81.7
d1uoua3	105	Thymidine phosphorylase {Human (Homo sapiens) [Tax	81.14
d2gpra_	154	Glucose permease IIa domain, IIa-glc {Mycoplasma c	81.0
d1uoua3	105	Thymidine phosphorylase {Human (Homo sapiens) [Tax	80.92
d1qapa2	122	Quinolinic acid phosphoribosyltransferase (Nicotin	80.33
d1brwa3	103	Pyrimidine nucleoside phosphorylase {Bacillus stea	80.23

>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.3e-54  Score=415.05  Aligned_cols=191  Identities=28%  Similarity=0.402  Sum_probs=183.9

Q ss_pred             CceeccchhhHHHHHHhhhc-CCccEEEEEEEEechHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHhhCCcCcce
Q 012955          258 STVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKP-------KGVTMTALLAKAAAMALVQHPVVNAS  329 (452)
Q Consensus       258 ~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l~~lr~~~~~-------~~vs~t~~l~kA~a~AL~~~P~~Ns~  329 (452)
                      ++++|++++||+||++|++| +++||||+..+||+++|+++|+++++       .++|+++||+||++.||++||++|++
T Consensus         4 ee~vpls~~rk~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~~~~~~~~~~~~klt~~~~likA~a~aL~~~P~~Na~   83 (233)
T d1scza_           4 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS   83 (233)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCE
T ss_pred             CcccCCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHHhhHhhcCCccCHHHHHHHHHHHHHHhCchhheE
Confidence            45789999999999999999 79999999999999999999998753       27999999999999999999999999


Q ss_pred             eeCCCeEEEcCCccEEEEEecCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCe
Q 012955          330 CKDGKSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRF  409 (452)
Q Consensus       330 ~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f  409 (452)
                      |+ ++++++++++|||+||++++||++|||||+|++|+.||++++++|.+|+|+|+|+++|++||||||||+||||+++|
T Consensus        84 ~~-~~~i~~~~~vnIgiAv~~~~GL~vPvI~~a~~~sl~eia~~~~~l~~~ar~~~L~~~d~~ggTfTISNlG~~g~~~~  162 (233)
T d1scza_          84 ID-GDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMS  162 (233)
T ss_dssp             EE-TTEEECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGTCCCC
T ss_pred             Ec-CCeEEEeccceEEEEEEcCCCeEEeEeeccccCCHHHHHHHHHHHHHHhhcCCCCHHHhCCCcEEEEcCccccceee
Confidence            97 56899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCceEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955          410 DAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLIS  450 (452)
Q Consensus       410 ~pii~ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~  450 (452)
                      +|||||||+||||+|+++++|++. ||++++|++|+|||||
T Consensus       163 tpii~ppq~aIl~vG~i~~~pv~~-~g~i~~r~~~~lsls~  202 (233)
T d1scza_         163 TPIINPPQSAILGMHAIKDRPMAV-NGQVEILPMMYLALSY  202 (233)
T ss_dssp             CCCCCTTCSEEEEEEEEEEEEEEE-TTEEEEEEEEEEEEEE
T ss_pred             eeecCCCCceEEecccceeecccc-CCeEEEEEEeEEEEEh
Confidence            999999999999999999999986 7999999999999998

>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=100.00  E-value=1.7e-53  Score=410.31  Aligned_cols=192  Identities=29%  Similarity=0.348  Sum_probs=183.8

Q ss_pred             CceeccchhhHHHHHHhhhc-CCccEEEEEEEEechHHHHHHHHhCC------CCCCHHHHHHHHHHHHHhhCCcCccee
Q 012955          258 STVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKP------KGVTMTALLAKAAAMALVQHPVVNASC  330 (452)
Q Consensus       258 ~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l~~lr~~~~~------~~vs~t~~l~kA~a~AL~~~P~~Ns~~  330 (452)
                      .+++|++++||+||++|++| +++||||+..++|+++|+++|+.+++      .++|+++||+||++.||++||.+|++|
T Consensus        15 ~e~vpls~~Rk~iA~~m~~S~~~iPh~~~~~evD~t~l~~~r~~l~~~~~~~~~k~t~~~~iikA~a~Al~~~P~~Ns~~   94 (243)
T d1dpba_          15 IEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSL   94 (243)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHHHTTCCCCSHHHHHHHHHHHHHHSGGGGEEE
T ss_pred             cEEEECcHHHHHHHHHHHHhhccCCEEEEEEEEecchHHHhhhhhhhhhhhcCccccHHHHHHHHHHHHHHHhhhhhhcc
Confidence            45799999999999999999 79999999999999999999988753      279999999999999999999999999


Q ss_pred             eCC-CeEEEcCCccEEEEEecCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCe
Q 012955          331 KDG-KSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRF  409 (452)
Q Consensus       331 ~~~-~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f  409 (452)
                      .++ ..+++++++||||||++++||++|||+||+++|+.||++++++|++|+|+|+|+++|++||||||||+||||+++|
T Consensus        95 ~~~~~~~~~~~~inigiAv~~~~GL~vPVI~~a~~~sl~~i~~~~~~l~~~ar~~~l~~~d~~ggTfTiSNlG~~G~~~~  174 (243)
T d1dpba_          95 APSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAF  174 (243)
T ss_dssp             CTTSSCEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEECTTTCCSCC
T ss_pred             ccccccceeecccceeeeeccCcceeeeeecchhhhhHHHHHHHHHHHHHHhhhcccccccccCceeEEeccCCccceeE
Confidence            754 5788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCceEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955          410 DAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLIS  450 (452)
Q Consensus       410 ~pii~ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~  450 (452)
                      +|||||||+||||+|+++++|+++ ||++++|++|+|||||
T Consensus       175 tpiInppq~aIlgvG~i~~~pv~~-~~~i~~r~~m~ltls~  214 (243)
T d1dpba_         175 TPIVNAPEVAILGVSKASMQPVWD-GKAFQPRLMLPLSLSY  214 (243)
T ss_dssp             CCCCCTTSSEEEEECCCEEEEEEC-SSSEEEEEEEEEEEEE
T ss_pred             EeeeccccceeeecccceeeEEEE-CCEEEEEEEEEEEEEe
Confidence            999999999999999999999997 7999999999999998

>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=2.1e-52  Score=402.81  Aligned_cols=192  Identities=27%  Similarity=0.376  Sum_probs=183.6

Q ss_pred             CceeccchhhHHHHHHhhhc-CCccEEEEEEEEechHHHHHHHHhCC------CCCCHHHHHHHHHHHHHhhCCcCccee
Q 012955          258 STVVPFTTMQAAVSKNMIES-LSVPTFRVGYPIITDALDALYEKVKP------KGVTMTALLAKAAAMALVQHPVVNASC  330 (452)
Q Consensus       258 ~~~~p~s~~rk~ia~~m~~S-~~iP~~~~~~eid~~~l~~lr~~~~~------~~vs~t~~l~kA~a~AL~~~P~~Ns~~  330 (452)
                      ++++|++++||+||++|++| +++||||+.+|+|+++|+++|+++|+      .++|+++||+||++.||++||.+|++|
T Consensus        14 ~~~~~ls~~rk~ia~~m~~S~~~iPh~t~~~evDvt~l~~~r~~lk~~~~~~g~klT~~~~likA~a~AL~~~P~~Na~~   93 (242)
T d1b5sa_          14 ETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSI   93 (242)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHTTSSCCCEEEEEEECHHHHHHHHHTHHHHHHTTCCCCSHHHHHHHHHHHHHHCGGGSCCB
T ss_pred             ceeeeCcHHHHHHHHHHHHhhccCCeEEEEEEEeehhHHHhhhhhhhhhhhcccccchhhHHHHHHHHHHHHhhhhheEE
Confidence            45689999999999999999 68999999999999999999999863      279999999999999999999999999


Q ss_pred             eCC-CeEEEcCCccEEEEEecCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcCCCCcCccCCCcEEEecCCCCCCCCe
Q 012955          331 KDG-KSFTYNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQLQPHEYNSGTFTLSNLGMFGVDRF  409 (452)
Q Consensus       331 ~~~-~~i~~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g~l~~~d~~ggTftISNlG~~Gv~~f  409 (452)
                      +++ +.+.+++++||||||++++||++|||+|+|++|+.||+++++++.+++|+|+|.++|++||||||||+|+||+++|
T Consensus        94 ~~~~~~i~~~~~v~igiAv~~~~gL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~gkl~~~dl~ggtftisnlG~~G~~~f  173 (242)
T d1b5sa_          94 DDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWF  173 (242)
T ss_dssp             CTTSSCBCCCSSCCEEECEECSSCEECCEETTGGGCCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSCEEEECTTTCCSCC
T ss_pred             cCCCCEEEEeeeeEEEEEecCCCceEeeeecccccccHHHHHHHHHHHHHHHHcCCCChhhccCcceEEeecCCCCccce
Confidence            754 5788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCceEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955          410 DAILPPGQGAIMAVGASKPTVVADADGFFGVKSKMLVSLIS  450 (452)
Q Consensus       410 ~pii~ppq~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~  450 (452)
                      +|||||||+||||+|+++++|++. ||++++|++|+|||||
T Consensus       174 tpii~~pq~ail~vG~i~~~pv~~-dg~i~~r~~m~lslt~  213 (242)
T d1b5sa_         174 TPVINHPEVAILGIGRIAEKPIVR-DGEIVAAPMLALSLSF  213 (242)
T ss_dssp             CCCCCTTCCEEEEECCCEEEEEEC-SSSEEEEEEEEEEEEE
T ss_pred             ecccccccceEEeccceEEEEEEE-CCeEEEEEEEEEEEEE
Confidence            999999999999999999999996 8999999999999998

>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=5.2e-29  Score=234.67  Aligned_cols=178  Identities=13%  Similarity=0.084  Sum_probs=151.8

Q ss_pred             ceeccch-hhHHHHHHhhhcCCccEEEEEEEEechHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCCcCcceeeCCCeEE
Q 012955          259 TVVPFTT-MQAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFT  337 (452)
Q Consensus       259 ~~~p~s~-~rk~ia~~m~~S~~iP~~~~~~eid~~~l~~lr~~~~~~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~~i~  337 (452)
                      +.+.++. -||...... .....|||+++.+||+++|.++|++.   ++|++++++||+++||++||+||.+|.+ ++++
T Consensus         5 k~ID~~~W~R~~~f~~f-~~~~~P~f~it~~vDvT~l~~~~K~~---~~sf~~~~~~av~~Al~~~P~~n~~~~~-~~i~   79 (214)
T d1q23a_           5 TTVDISQWHRKEHFEAF-QSVAQCTYNQTVQLDITAFLKTVKKN---KHKFYPAFIHILARLMNAHPEFRMAMKD-GELV   79 (214)
T ss_dssp             EECCGGGCTTHHHHHHH-TTTTCEEEEEEEEEECHHHHHHHHHT---TCCHHHHHHHHHHHHHTTCGGGSEEEET-TEEE
T ss_pred             eEeccccCcCHHHHHHH-hCCCCCeEEEEEEEcHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhChHhheEEcC-Ccee
Confidence            3444555 355544442 34679999999999999999888753   7999999999999999999999999975 5899


Q ss_pred             EcCCccEEEEEecCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcCC-CCcCccCCCcEEEecCCCCCCCCeEeecCCC
Q 012955          338 YNANINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQ-LQPHEYNSGTFTLSNLGMFGVDRFDAILPPG  416 (452)
Q Consensus       338 ~~~~vnIgvAV~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g~-l~~~d~~ggTftISNlG~~Gv~~f~pii~pp  416 (452)
                      +++++|+|+||++++||++|||++++++++.||++++.+++.++++++ |.++|+++|||+|||+|++|.+.|+..++.+
T Consensus        80 ~~~~i~i~iav~~~~gl~v~~i~~~~~~~~~ef~~~~~~~~~~~~~~~~l~~~~~~~~tftiSnlg~~~ft~~~~~~~~~  159 (214)
T d1q23a_          80 IWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANM  159 (214)
T ss_dssp             EESCCEEEEEEEETTTTEEEEEECCCCSSHHHHHHHHHHHHHHHTTCCSSSTTCCCSSEEEEEECTTCCCSEEEEEESCC
T ss_pred             EcCccCeEEEEEcCCCeEEeEEecCchhhHHHHHHHHHHHHHHHHhCCCCCCccccCCEEEEEcCCCccccCccCCCCCC
Confidence            999999999999999999999999999999999999999999998865 9999999999999999999998888766655


Q ss_pred             c---eEEEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955          417 Q---GAIMAVGASKPTVVADADGFFGVKSKMLVSLIS  450 (452)
Q Consensus       417 q---~aiL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~  450 (452)
                      .   ++|+++|.+.+     +||    |.+|+|||+|
T Consensus       160 ~~~~vpii~~Gk~~~-----~~~----r~~mplsls~  187 (214)
T d1q23a_         160 DNFFAPVFTMGKYYT-----QGD----KVLMPLAIQV  187 (214)
T ss_dssp             TTCCSCEEEECCCEE-----ETT----EEEEEEEEEE
T ss_pred             ccceeeEEEecceEE-----ECC----EEEEEEEEEe
Confidence            3   56999997643     255    5689999997

>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=2.4e-27  Score=222.98  Aligned_cols=168  Identities=13%  Similarity=0.072  Sum_probs=138.7

Q ss_pred             hHHHHHHhhhcCCccEEEEEEEEechHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhCCcCcceeeCCCeEEEcCCccEEE
Q 012955          267 QAAVSKNMIESLSVPTFRVGYPIITDALDALYEKVKPKGVTMTALLAKAAAMALVQHPVVNASCKDGKSFTYNANINIAV  346 (452)
Q Consensus       267 rk~ia~~m~~S~~iP~~~~~~eid~~~l~~lr~~~~~~~vs~t~~l~kA~a~AL~~~P~~Ns~~~~~~~i~~~~~vnIgv  346 (452)
                      ||...... ...+.|||+++.+||+++|.++++   +.++|++++++||+++||++||+||++|.+ +++++|+++|+|+
T Consensus        13 Rk~~f~~f-~~~~~P~~~~t~~vDvT~l~~~~K---~~~~sf~~~~~~a~~~Al~~~P~~n~~~~~-~~i~~~~~i~~~~   87 (213)
T d3claa_          13 RREHFEFY-RHRLPCGFSLTSKIDITTLKKSLD---DSAYKFYPVMIYLIAQAVNQFDELRMAIKD-DELIVWDSVDPQF   87 (213)
T ss_dssp             THHHHHHH-HHTSCCEEEEEEEEECHHHHHHHH---TSSCCHHHHHHHHHHHHHTTCGGGSEEEET-TEEEEESCCEEEE
T ss_pred             cHHHHHHH-hCCCCCEEEEEEEEeHHHHHHHHH---HcCCCeeHHHHHHHHHHHHhChHhhhEecc-CeEEEecccceEE
Confidence            56555554 237889999999999999987765   458999999999999999999999999974 6899999999999


Q ss_pred             EEecCCCeEeeeecCCCCCCHHHHHHHHHHHHHHHHcCC-CCcCccCCCcEEEecCCCCCCCCeEeecCCCceE------
Q 012955          347 AVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARSKQ-LQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGA------  419 (452)
Q Consensus       347 AV~~~~GL~vPVI~~a~~~sl~eia~~i~~l~~kar~g~-l~~~d~~ggTftISNlG~~Gv~~f~pii~ppq~a------  419 (452)
                      ||++++||++|||++++++++.+|+++++++++++|+++ +.+++.. |++++ |+|++|...|++|+++|+.+      
T Consensus        88 aV~~~~gl~vp~i~~~~~~~l~~f~~~~~~~~~~ar~~~~~~~~~~~-~~~~~-~is~l~~~~Ft~i~~~~~~~~~~~~P  165 (213)
T d3claa_          88 TVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVT-PENHL-NISALPWVNFDSFNLNVANFTDYFAP  165 (213)
T ss_dssp             EEEETTTTEEEEEECCCCSSHHHHHHHHHHHHHHHTTCCSSSTTSSC-CSSEE-EEEEETTCCCSCCCCCCSCCTTCCSC
T ss_pred             EEEcCCCeEEeeEecCCCCCHHHHHHHHHHHHHHHHhCCCCCccccC-CCcEE-EeeccCceEeecccCCcccCcccccc
Confidence            999999999999999999999999999999999999986 5555544 33333 67777777899999999875      


Q ss_pred             EEEecCceeEEEEcCCCcEEEEeEEEEEEEe
Q 012955          420 IMAVGASKPTVVADADGFFGVKSKMLVSLIS  450 (452)
Q Consensus       420 iL~vG~i~~~~v~~~dg~i~~~~~m~ltlt~  450 (452)
                      |+..|.+..+     +|    |.+|+|+|+|
T Consensus       166 ii~~Gk~~~~-----~~----r~~m~lsls~  187 (213)
T d3claa_         166 IITMAKYQQE-----GD----RLLLPLSVQV  187 (213)
T ss_dssp             EEEEECCEEE-----TT----EEEEEEEEEE
T ss_pred             EEecCccEEE-----CC----EEEEEEEEEe
Confidence            4444443221     23    6799999997

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.2e-23  Score=175.04  Aligned_cols=85  Identities=39%  Similarity=0.677  Sum_probs=80.2

Q ss_pred             cceeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCC-ccCCCCeEEEEe
Q 012955           55 QSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGE-SAPVGAAIGILA  133 (452)
Q Consensus        55 ~~~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~-~v~~G~~l~~i~  133 (452)
                      ++.+++|+||+||++|++|+|++|+|++||.|++||+||+|||||+.++|+||++|+|.++++++|+ .|++|++||+|.
T Consensus         2 ~p~~iei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vETdK~~~ei~a~~~G~l~~i~v~eGd~~v~vG~~ia~i~   81 (102)
T d1y8ob1           2 YPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV   81 (102)
T ss_dssp             CCSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEE
T ss_pred             CCCCEEEECCCCCCCccEEEEEEEEeCCCCEEecCccEEEEEcCcEEEEEecCCcEEEEEEEEccCCEEEcCCCEEEEEe
Confidence            5678999999999999999999999999999999999999999999999999999999999999997 699999999997


Q ss_pred             cchhhH
Q 012955          134 ETEAEV  139 (452)
Q Consensus       134 ~~~~~~  139 (452)
                      +.+++.
T Consensus        82 ~~~~~~   87 (102)
T d1y8ob1          82 EKEADI   87 (102)
T ss_dssp             SSGGGG
T ss_pred             cCCccc
Confidence            766654

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.87  E-value=1.1e-22  Score=161.57  Aligned_cols=77  Identities=31%  Similarity=0.583  Sum_probs=75.0

Q ss_pred             EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus        59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      .+|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|+.|+++
T Consensus         2 iei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~a~~~G~v~~i~v~~Gd~v~~G~~l~~i~~~   78 (79)
T d1ghja_           2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTEG   78 (79)
T ss_dssp             EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECCC
T ss_pred             cEEEcCCCCCCccEEEEEEEEcCCCCEEeeCccEEEEEcCceEEEEEeceeEEEEEEEcCCCCEECCCCEEEEEeCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999764

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.6e-22  Score=163.43  Aligned_cols=81  Identities=22%  Similarity=0.395  Sum_probs=77.6

Q ss_pred             ceeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955           56 SKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus        56 ~~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      ..+++|+||+||++|++|+|++|++++||.|++||+||+|||||+.++|+||++|+|.++++++|+.+++|++|+.|+.+
T Consensus         2 ~~~~~~~lP~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEt~K~~~~v~A~~~G~I~~i~v~~G~~v~~G~~l~~i~~~   81 (87)
T d1k8ma_           2 GQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETE   81 (87)
T ss_dssp             CCCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECS
T ss_pred             CccEEEECCCCCCCceeEEEEEEEcCCCCEEecCCEEEEEEccCceEEEEeCCCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999754


Q ss_pred             h
Q 012955          136 E  136 (452)
Q Consensus       136 ~  136 (452)
                      .
T Consensus        82 ~   82 (87)
T d1k8ma_          82 A   82 (87)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.85  E-value=7.1e-23  Score=163.07  Aligned_cols=77  Identities=30%  Similarity=0.531  Sum_probs=74.4

Q ss_pred             EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus        59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      ++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++||.|++|++|+.|+.+
T Consensus         2 ~ei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~A~~~G~v~~i~v~~Gd~v~~G~~l~~ie~~   78 (80)
T d1laba_           2 FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAP   78 (80)
T ss_dssp             BCSSCSCSSSTTCSEEEEECCCSSCCEECSSCCCEEEECSSCEEEECCSSCEECCCBSSCSSSEECSSSCSBCBBCS
T ss_pred             eEEECCCCCCCceeEEEEEEEeCCCCEEeeCcCEEEEEcccEEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEEecC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999654

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=1.1e-22  Score=161.91  Aligned_cols=76  Identities=30%  Similarity=0.577  Sum_probs=74.1

Q ss_pred             EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEec
Q 012955           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAE  134 (452)
Q Consensus        59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~  134 (452)
                      ++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|+.|++
T Consensus         3 iei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEtdK~~~ev~a~~~G~l~~i~v~~Gd~v~~G~~l~~i~e   78 (80)
T d1pmra_           3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE   78 (80)
T ss_dssp             CCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred             eEEECCCCCCCccEEEEEEEEeCCCCEEcCCCEEEEEEcCceEEEEeccCCEEEEEEEeCCCCEECCCCEEEEEeC
Confidence            5799999999999999999999999999999999999999999999999999999999999999999999999974

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=2.4e-20  Score=148.36  Aligned_cols=78  Identities=24%  Similarity=0.443  Sum_probs=73.8

Q ss_pred             eeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955           57 KIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus        57 ~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      |+++|+||+||+  ++++|++|++++||.|++||+||+||+||++++|+||++|+|.++++++|+.|++|++|+.|+.++
T Consensus         1 M~~ei~~P~lG~--~~~~v~~~~v~~Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~eg   78 (80)
T d1qjoa_           1 MVKEVNVPDIGG--DEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG   78 (80)
T ss_dssp             CEEEECCCCCSS--SCEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESCC
T ss_pred             CCeEEECCCCCC--CeEEEEEEEeCCCCEECCCCEEEEEEcCcccceEeCCeeEEEEEEEeCCCCEECCCCEEEEEecCc
Confidence            578999999986  489999999999999999999999999999999999999999999999999999999999997543

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.80  E-value=6.5e-21  Score=152.08  Aligned_cols=78  Identities=22%  Similarity=0.386  Sum_probs=74.3

Q ss_pred             eEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955           58 IREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus        58 ~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      +.+|+||+|| ++++++|++|++++||.|++||+||+||+||++++|+||.+|+|.++++++|+.|++|++|+.|+.++
T Consensus         2 iiei~~P~lg-~~~~~~v~~w~v~~Gd~V~~gd~l~~iEt~K~~~~i~a~~~G~i~~i~v~~G~~v~~G~~l~~ie~~g   79 (81)
T d1gjxa_           2 LVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAEG   79 (81)
T ss_dssp             CEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCSC
T ss_pred             cEEEECCCCC-CCcEEEEEEEEeCCCCEECCCCEEEEEEcCCcEEEEEeeeeEEEEEEEeCCCCEECCCCEEEEEeccc
Confidence            5789999999 58999999999999999999999999999999999999999999999999999999999999997543

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.77  E-value=4.1e-19  Score=140.85  Aligned_cols=75  Identities=27%  Similarity=0.449  Sum_probs=70.9

Q ss_pred             EEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955           59 REIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus        59 ~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      ..|+||+||.   +|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.|++|++|+.|+..+
T Consensus         2 ~~i~~P~~g~---~g~i~~~~v~~Gd~V~~gd~l~~iE~~K~~~~i~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~~~   76 (79)
T d1iyua_           2 EIIRVPDIGG---DGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAA   76 (79)
T ss_dssp             EEEECCCCSS---EEEEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred             CEEECCCCCC---CEEEEEEEecCCCEEecCceEEEEEecCcEEEEEeccccEEEEEeeCCCCEECCCCEEEEEecCc
Confidence            4688999994   79999999999999999999999999999999999999999999999999999999999997643

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=99.62  E-value=5e-16  Score=122.20  Aligned_cols=60  Identities=23%  Similarity=0.446  Sum_probs=59.3

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEE
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGIL  132 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i  132 (452)
                      |+|++|+|++||+|++||+||++|+||+.++|+||++|+|.++++++|+.|..|++|+.|
T Consensus        17 G~v~~~~V~~Gd~V~~G~~l~~vE~~K~~~~i~ap~~G~V~~i~v~~G~~V~~G~~L~~i   76 (77)
T d1dcza_          17 GTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI   76 (77)
T ss_dssp             CEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEE
T ss_pred             cEEEEEEcCCCCEEeCCCeEEEEEccCccEEEEeCCCEEEEEEeeCCCCEECCCCEEEEe
Confidence            899999999999999999999999999999999999999999999999999999999987

>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3/E1 binding domain of dihydrolipoyl acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.53  E-value=1.9e-15  Score=104.19  Aligned_cols=41  Identities=34%  Similarity=0.565  Sum_probs=39.2

Q ss_pred             ccccChhHHHHHhhcCCCccccccCCCCcccchhhHHHhhc
Q 012955          185 KTVATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAG  225 (452)
Q Consensus       185 ~~~asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV~~~~~  225 (452)
                      ++++||+||+||+|+||||++|.|||++|||+++||++|++
T Consensus         1 rv~asP~arkla~e~gidl~~i~GTG~~GRItk~DV~~~i~   41 (42)
T d1w85i_           1 RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA   41 (42)
T ss_dssp             CCCCCHHHHHHHHHTTCCTTTSCCCSGGGCCCHHHHHHHHC
T ss_pred             CcccCHHHHHHHHHcCCCHHHCccCCCCCcEeHHHHHHHhC
Confidence            46899999999999999999999999999999999999986

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=5.2e-14  Score=111.14  Aligned_cols=58  Identities=19%  Similarity=0.310  Sum_probs=56.0

Q ss_pred             EEEEcCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEe
Q 012955           76 VSWIKSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILA  133 (452)
Q Consensus        76 ~~w~v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~  133 (452)
                      .+++|++||+|++||+||.||+||+.++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus        23 ~~~~V~~Gd~V~~Gq~l~~iEamKm~~~i~a~~~G~v~~i~v~~G~~V~~G~~L~~ie   80 (80)
T d1bdoa_          23 AKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             SCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             CCeEccCCCeEeCCCEEEEEEcCcccEEEEcCCCeEEEEEEeCCCCEECCCCEEEEEC
Confidence            4789999999999999999999999999999999999999999999999999999884

>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3-binding domain of dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=1.9e-14  Score=97.67  Aligned_cols=38  Identities=42%  Similarity=0.675  Sum_probs=36.5

Q ss_pred             cChhHHHHHhhcCCCccccccCCCCcccchhhHHHhhc
Q 012955          188 ATPYAKKLLKQHKVDINSVVGTGPFGRITPEDVEKAAG  225 (452)
Q Consensus       188 asP~aRklA~e~gIdL~~V~gtG~~GrI~~~DV~~~~~  225 (452)
                      .||+|||||+|+||||++|.|||++|||+++||++|++
T Consensus         1 iSP~arkla~e~gidl~~i~GtG~~GRI~k~Dv~~~i~   38 (39)
T d2cyua1           1 LSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLA   38 (39)
T ss_dssp             CCCTHHHHHHHHTCCGGGSCCCSSSSCCCHHHHHHHSC
T ss_pred             CCHHHHHHHHHcCCCHHHCcCCCCCCcEeHHHHHHHHc
Confidence            48999999999999999999999999999999999975

>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Thermus thermophilus [TaxId: 274]

Probab=97.00  E-value=0.00052  Score=57.36  Aligned_cols=59  Identities=25%  Similarity=0.266  Sum_probs=44.1

Q ss_pred             eeEEEEcCCCCCCCceEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEE
Q 012955           57 KIREIFMPALSSTMTEGKIVSWIK-SEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV  116 (452)
Q Consensus        57 ~~~~i~~P~l~~~~~eg~I~~w~v-~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~  116 (452)
                      ....|-|-+++.. .-|.|+.+.. ++|+.|++||.++.||+.|+..+|.||.+|+|.++.
T Consensus        20 ~~~~iGit~~a~~-~lG~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~Vv~vN   79 (127)
T d1onla_          20 DTVLVGITDYAQD-ALGDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVN   79 (127)
T ss_dssp             TEEEEEECHHHHH-HHCSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEEC
T ss_pred             CEEEEEeCHHHHh-hccccccccCCCCCchhcCCCceEEEeeccceeeccCCccceEEEEh
Confidence            3444444443321 2344555543 899999999999999999999999999999998875

>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Pea (Pisum sativum) [TaxId: 3888]

Probab=96.96  E-value=0.00057  Score=57.40  Aligned_cols=44  Identities=30%  Similarity=0.323  Sum_probs=38.3

Q ss_pred             EEEEEEE-cCCCCeecCCCeEEEEEeCceeeEEEcCCCeEEEEEE
Q 012955           73 GKIVSWI-KSEGDVLSKGESVVVVESDKADMDVETFYDGILAAIV  116 (452)
Q Consensus        73 g~I~~w~-v~~Gd~V~~gd~l~~vetdK~~~ev~ap~~G~l~~i~  116 (452)
                      |.|+.+. .++|+.|++||.++.||+.|+..+|.||.+|+|.++.
T Consensus        36 G~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPv~G~vv~vN   80 (131)
T d1hpca_          36 GEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVN   80 (131)
T ss_dssp             CSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEEC
T ss_pred             hhheeecCCCCCccccCCCceEEEEeecccccccCCcchhheeeh
Confidence            4455554 3899999999999999999999999999999998874

>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Membrane and cell surface proteins and peptides
fold: HlyD-like secretion proteins
superfamily: HlyD-like secretion proteins
family: HlyD-like secretion proteins
domain: Multidrug resistance protein MexA domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.79  E-value=0.00016  Score=65.29  Aligned_cols=64  Identities=20%  Similarity=0.284  Sum_probs=54.0

Q ss_pred             EcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCce-----------------------------------------
Q 012955           62 FMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDKA-----------------------------------------  100 (452)
Q Consensus        62 ~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~-----------------------------------------  100 (452)
                      +.|.++     |.|.+|+|++||.|++||+|+++.+...                                         
T Consensus        18 V~s~v~-----G~V~~v~V~~G~~VkkGq~L~~ld~~~~~~~l~~a~a~~~~a~~~~~r~~~l~~~~~~~~~~~~~~~~~   92 (237)
T d1vf7a_          18 VRPQVN-----GIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAA   92 (237)
T ss_dssp             ECCSSC-----EEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred             EEeecC-----EEEEEEECCCcCEECCCCEEEEEehHHHHhhhhhhhhhhhhhhhhhhhhhhhhhccccccchhhhhhhh
Confidence            445566     9999999999999999999999976322                                         


Q ss_pred             ----------------eeEEEcCCCeEEEEEEeCCCCccCCCCeEE
Q 012955          101 ----------------DMDVETFYDGILAAIVVPEGESAPVGAAIG  130 (452)
Q Consensus       101 ----------------~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~  130 (452)
                                      ...+.||++|+|.++.+.+|+.+..|....
T Consensus        93 ~~~a~~~l~~a~~~l~~~~i~ap~~G~v~~~~~~~g~~~~~~~~~~  138 (237)
T d1vf7a_          93 YLQSKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANA  138 (237)
T ss_dssp             HHHHHHHHHHHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSC
T ss_pred             cchhHHHHHHHhhhhcccccccchhceeeeEEeccCcEEcCCccee
Confidence                            556899999999999999999988876443

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=96.15  E-value=0.0023  Score=48.49  Aligned_cols=35  Identities=20%  Similarity=0.409  Sum_probs=32.1

Q ss_pred             eEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955          102 MDVETFYDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus       102 ~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      -.|+||..|+|.++++++||.|..|++|+.++...
T Consensus         9 ~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~vE~~K   43 (77)
T d1dcza_           9 GEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMK   43 (77)
T ss_dssp             SEEEBSSSCEEEEECCCTTCEECTTSEEEEEEETT
T ss_pred             CEEECCCCcEEEEEEcCCCCEEeCCCeEEEEEccC
Confidence            47999999999999999999999999999997643

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=95.60  E-value=0.0077  Score=45.88  Aligned_cols=37  Identities=19%  Similarity=0.308  Sum_probs=30.3

Q ss_pred             ecceeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEE
Q 012955           54 VQSKIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVE   96 (452)
Q Consensus        54 ~~~~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~ve   96 (452)
                      .+-+..+|.-|      ..|+|.+|++++||.|+.||+|++||
T Consensus        44 amKm~~~i~a~------~~G~v~~i~v~~G~~V~~G~~L~~ie   80 (80)
T d1bdoa_          44 AMKMMNQIEAD------KSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             ETTEEEEEECS------SCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             cCcccEEEEcC------CCeEEEEEEeCCCCEECCCCEEEEEC
Confidence            34455566655      45999999999999999999999986

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.89  E-value=0.013  Score=44.25  Aligned_cols=37  Identities=24%  Similarity=0.359  Sum_probs=30.1

Q ss_pred             eeEEEEcCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 012955           57 KIREIFMPALSSTMTEGKIVSWIKSEGDVLSKGESVVVVESDK   99 (452)
Q Consensus        57 ~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK   99 (452)
                      +..+|.-|      ..|+|.+|++++||.|..||+|+.||...
T Consensus        40 ~~~~i~a~------~~G~v~~i~v~~G~~V~~G~~l~~ie~~~   76 (79)
T d1iyua_          40 ASMEVPSP------KAGVVKSVSVKLGDKLKEGDAIIELEPAA   76 (79)
T ss_dssp             CEEEEECS------SSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred             cEEEEEec------cccEEEEEeeCCCCEECCCCEEEEEecCc
Confidence            34555555      34999999999999999999999999653

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.61  E-value=0.014  Score=45.08  Aligned_cols=30  Identities=20%  Similarity=0.286  Sum_probs=27.5

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCce
Q 012955           71 TEGKIVSWIKSEGDVLSKGESVVVVESDKA  100 (452)
Q Consensus        71 ~eg~I~~w~v~~Gd~V~~gd~l~~vetdK~  100 (452)
                      ..|+|.++++++||.|+.|++|+.|+++..
T Consensus        54 ~~G~I~~i~v~~G~~v~~G~~l~~i~~~~~   83 (87)
T d1k8ma_          54 YDGVIKKLYYNLDDIAYVGKPLVDIETEAL   83 (87)
T ss_dssp             SCEEEEEECCCSSCEECTTSEEEEEECSCC
T ss_pred             CCEEEEEEEeCCCCEECCCCEEEEEEcCCc
Confidence            469999999999999999999999998754

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=94.44  E-value=0.0095  Score=45.24  Aligned_cols=28  Identities=18%  Similarity=0.338  Sum_probs=26.0

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 012955           71 TEGKIVSWIKSEGDVLSKGESVVVVESD   98 (452)
Q Consensus        71 ~eg~I~~w~v~~Gd~V~~gd~l~~vetd   98 (452)
                      ..|+|.++++++||.|+.||+|+.||++
T Consensus        50 ~~G~v~~i~v~~G~~V~~G~~l~~ie~e   77 (80)
T d1qjoa_          50 FAGVVKELKVNVGDKVKTGSLIMIFEVE   77 (80)
T ss_dssp             SCEEEEECCCCTTCEECTTCCCEEEESC
T ss_pred             eeEEEEEEEeCCCCEECCCCEEEEEecC
Confidence            4699999999999999999999999975

>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Membrane and cell surface proteins and peptides
fold: HlyD-like secretion proteins
superfamily: HlyD-like secretion proteins
family: HlyD-like secretion proteins
domain: Multidrug resistance protein MexA domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.32  E-value=0.021  Score=50.65  Aligned_cols=44  Identities=14%  Similarity=0.154  Sum_probs=37.0

Q ss_pred             EEEEeCceeeEEEcCCCeEEEEEEeCCCCccCCCCeEEEEecchh
Q 012955           93 VVVESDKADMDVETFYDGILAAIVVPEGESAPVGAAIGILAETEA  137 (452)
Q Consensus        93 ~~vetdK~~~ev~ap~~G~l~~i~v~~G~~v~~G~~l~~i~~~~~  137 (452)
                      ..|+..+ ..+|.|+.+|+|.+++|++|+.|+.|++|+.|+..+-
T Consensus         8 G~i~a~~-~~~V~s~v~G~V~~v~V~~G~~VkkGq~L~~ld~~~~   51 (237)
T d1vf7a_           8 GRTNAFR-IAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPATY   51 (237)
T ss_dssp             EECEESC-EEEECCSSCEEEEECCSCSSEEECTTSEEEEECCHHH
T ss_pred             EEEEeeE-EEEEEeecCEEEEEEECCCcCEECCCCEEEEEehHHH
Confidence            4566544 4679999999999999999999999999999976543

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.06  E-value=0.056  Score=40.70  Aligned_cols=27  Identities=30%  Similarity=0.487  Sum_probs=25.0

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEe
Q 012955           71 TEGKIVSWIKSEGDVLSKGESVVVVES   97 (452)
Q Consensus        71 ~eg~I~~w~v~~Gd~V~~gd~l~~vet   97 (452)
                      ..|+|.++++++||.|..|++|+.|+.
T Consensus        51 ~~G~v~~i~v~~Gd~v~~G~~l~~i~~   77 (79)
T d1ghja_          51 ADGVIAEIVKNEGDTVLSGELLGKLTE   77 (79)
T ss_dssp             SCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred             eeEEEEEEEcCCCCEECCCCEEEEEeC
Confidence            459999999999999999999999974

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.27  E-value=0.14  Score=40.29  Aligned_cols=28  Identities=14%  Similarity=0.124  Sum_probs=25.8

Q ss_pred             CCeEEEEEEeCCCCccCCCCeEEEEecc
Q 012955          108 YDGILAAIVVPEGESAPVGAAIGILAET  135 (452)
Q Consensus       108 ~~G~l~~i~v~~G~~v~~G~~l~~i~~~  135 (452)
                      ..|+|.++++++||.|..|++|+.++..
T Consensus        18 ~eg~i~~w~v~~Gd~V~~gd~l~~vETd   45 (102)
T d1y8ob1          18 TMGTVQRWEKKVGEKLSEGDLLAEIETD   45 (102)
T ss_dssp             SEEEEEEECSCTTCEECTTCEEEEEECS
T ss_pred             cEEEEEEEEeCCCCEEecCccEEEEEcC
Confidence            5799999999999999999999999764

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.46  E-value=0.086  Score=39.73  Aligned_cols=29  Identities=10%  Similarity=0.186  Sum_probs=26.2

Q ss_pred             CCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955          108 YDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus       108 ~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      .+|+|.++++++||.|..|++|+.++...
T Consensus        14 ~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K   42 (80)
T d1laba_          14 HEGEIVKWFVKPGDEVNEDDVLCEVQNDK   42 (80)
T ss_dssp             CSEEEEECCCSSCCEECSSCCCEEEECSS
T ss_pred             eeEEEEEEEeCCCCEEeeCcCEEEEEccc
Confidence            47999999999999999999999997643

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=88.68  E-value=0.024  Score=42.97  Aligned_cols=26  Identities=12%  Similarity=0.282  Sum_probs=24.5

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEE
Q 012955           71 TEGKIVSWIKSEGDVLSKGESVVVVE   96 (452)
Q Consensus        71 ~eg~I~~w~v~~Gd~V~~gd~l~~ve   96 (452)
                      ..|+|.++++++||.|+.||+|+.||
T Consensus        52 ~~G~l~~i~v~~Gd~v~~G~~l~~i~   77 (80)
T d1pmra_          52 ADGILDAVLEDEGTTVTSRQILGRLR   77 (80)
T ss_dssp             SBCCCCBCTTCTTCEECSSSEEEBCC
T ss_pred             CCEEEEEEEeCCCCEECCCCEEEEEe
Confidence            46999999999999999999999987

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=88.55  E-value=0.15  Score=38.29  Aligned_cols=29  Identities=17%  Similarity=0.180  Sum_probs=25.7

Q ss_pred             CCeEEEEEEeCCCCccCCCCeEEEEecch
Q 012955          108 YDGILAAIVVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus       108 ~~G~l~~i~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      .+|.|.++++++||.|..|++|+.++...
T Consensus        14 ~~~~v~~w~v~~Gd~V~~gd~l~~iEt~K   42 (81)
T d1gjxa_          14 ENVDIIAVEVNVGDTIAVDDTLITLETDK   42 (81)
T ss_dssp             SSEEEEEECCCSSCBCCSSCCCEEEECSS
T ss_pred             cEEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence            46889999999999999999999997543

>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Pyrimidine nucleoside phosphorylase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.02  E-value=0.5  Score=36.99  Aligned_cols=38  Identities=18%  Similarity=0.246  Sum_probs=32.6

Q ss_pred             ceeeEEEcCCCeEEEEE-------------------------------EeCCCCccCCCCeEEEEecch
Q 012955           99 KADMDVETFYDGILAAI-------------------------------VVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus        99 K~~~ev~ap~~G~l~~i-------------------------------~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      |-..+|.|+.+|+|..+                               +.+.||.|..|++|+.+...+
T Consensus         3 ~~~~~v~A~~~G~v~~id~~~iG~~~~~LGaGR~~~~D~ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~   71 (103)
T d1brwa3           3 AYTSTVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDRVQKGEALATIHSNR   71 (103)
T ss_dssp             SEEEEEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTCEECTTCEEEEEEESS
T ss_pred             CeEEEEECCCCEEEEEEeHHHHHHHHHHhCCCcccccCccCcccceEEeccCCCEEcCCCeEEEEEcCC
Confidence            45678999999999988                               578899999999999997544

>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose-specific factor III (glsIII)
species: Escherichia coli [TaxId: 562]

Probab=85.00  E-value=0.66  Score=38.84  Aligned_cols=58  Identities=22%  Similarity=0.391  Sum_probs=44.8

Q ss_pred             EEEEEEEcCCCCeecC----CCeEEEEEeCceeeEEEcCCCeEEEEE---------------------------------
Q 012955           73 GKIVSWIKSEGDVLSK----GESVVVVESDKADMDVETFYDGILAAI---------------------------------  115 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~----gd~l~~vetdK~~~ev~ap~~G~l~~i---------------------------------  115 (452)
                      |+++.+ -+.-|.|=.    ||-++.+=++.   .|-||++|+|..+                                 
T Consensus        10 G~vi~L-~~v~D~vFs~~~mG~GvAI~P~~~---~v~AP~dG~V~~v~~T~HAigi~t~~G~eiLIHiGidTV~L~G~gF   85 (150)
T d2f3ga_          10 GEIVNI-EDVPDVVFAEKIVGDGIAIKPTGN---KMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGF   85 (150)
T ss_dssp             EEEECG-GGSSCHHHHTTSSCEEEEEEECSS---EEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTTTE
T ss_pred             ceEEEc-ccCCChHHhcCCccCeEEEEeCCC---eEEeecCEEEEEECCCCCEEEEEeCCceEEEEEEccchhhcCCcce
Confidence            677663 366666543    78888776654   6889999998877                                 


Q ss_pred             --EeCCCCccCCCCeEEEEec
Q 012955          116 --VVPEGESAPVGAAIGILAE  134 (452)
Q Consensus       116 --~v~~G~~v~~G~~l~~i~~  134 (452)
                        ++++||.|..|++|+.+..
T Consensus        86 ~~~v~~Gd~V~~G~~L~~~D~  106 (150)
T d2f3ga_          86 KRIAEEGQRVKVGDTVIEFDL  106 (150)
T ss_dssp             EECSCTTCEECTTCEEEEECH
T ss_pred             EEEecCCCEECCCCEEEEEcH
Confidence              7899999999999999954

>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Bacillus subtilis [TaxId: 1423]

Probab=84.00  E-value=0.75  Score=38.80  Aligned_cols=58  Identities=21%  Similarity=0.285  Sum_probs=46.4

Q ss_pred             EEEEEEEcCCCCee----cCCCeEEEEEeCceeeEEEcCCCeEEEEE---------------------------------
Q 012955           73 GKIVSWIKSEGDVL----SKGESVVVVESDKADMDVETFYDGILAAI---------------------------------  115 (452)
Q Consensus        73 g~I~~w~v~~Gd~V----~~gd~l~~vetdK~~~ev~ap~~G~l~~i---------------------------------  115 (452)
                      |+++. +-+.-|.|    --||-++..=++.   .|-||++|+|..+                                 
T Consensus        18 G~vi~-L~~V~D~vFs~~~~G~G~aI~P~~~---~v~AP~~G~I~~i~~T~HAigi~t~~G~evLiHiGiDTV~L~G~gF   93 (158)
T d1gpra_          18 GEIHP-ITDVPDQVFSGKMMGDGFAILPSEG---IVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGEGF   93 (158)
T ss_dssp             EEEEE-GGGSSSHHHHTTSSCEEEEEEESSC---EEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSCGGGTTTTE
T ss_pred             cEEEE-hhhCCChHhccCCccceEEEEEcCC---EEEEeeCeEEEEEcCCCCEEEEEeCCCeEEEEEEeecccccCCcce
Confidence            78877 44777766    2388888777653   6899999999887                                 


Q ss_pred             --EeCCCCccCCCCeEEEEec
Q 012955          116 --VVPEGESAPVGAAIGILAE  134 (452)
Q Consensus       116 --~v~~G~~v~~G~~l~~i~~  134 (452)
                        ++++||.|..|++|+.+..
T Consensus        94 ~~~v~~Gd~Vk~G~~L~~~D~  114 (158)
T d1gpra_          94 TSFVSEGDRVEPGQKLLEVDL  114 (158)
T ss_dssp             EECCCTTCEECTTCEEEEECH
T ss_pred             EEEEcCCCEEcCCCEEEEeCH
Confidence              7899999999999999954

>d1qpoa2 d.41.2.1 (A:2-116) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.74  E-value=0.39  Score=38.30  Aligned_cols=26  Identities=23%  Similarity=0.322  Sum_probs=22.7

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeC
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVESD   98 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vetd   98 (452)
                      +--+.|++++||.|++||.|++|+-.
T Consensus        70 ~i~~~~~~~DG~~v~~G~~I~~i~G~   95 (115)
T d1qpoa2          70 GYRVLDRVEDGARVPPGEALMTLEAQ   95 (115)
T ss_dssp             SEEEEEECCTTCEECTTCEEEEEEEE
T ss_pred             ccceeeecCCCCEEecceeEEEEech
Confidence            45578999999999999999999843

>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Mycoplasma capricolum [TaxId: 2095]

Probab=81.70  E-value=0.26  Score=41.63  Aligned_cols=70  Identities=13%  Similarity=0.219  Sum_probs=44.0

Q ss_pred             EEEEcCCCCCC-Cc-eEEEEEEEcCCCCeecCCCeEEEEEeCce---------eeEEEcCCCeEEEEEEeCCCCccCCCC
Q 012955           59 REIFMPALSST-MT-EGKIVSWIKSEGDVLSKGESVVVVESDKA---------DMDVETFYDGILAAIVVPEGESAPVGA  127 (452)
Q Consensus        59 ~~i~~P~l~~~-~~-eg~I~~w~v~~Gd~V~~gd~l~~vetdK~---------~~ev~ap~~G~l~~i~v~~G~~v~~G~  127 (452)
                      .+|.+- +|-. .. +|+--+++|++||+|++||+|+++.-++.         -+-+.-....   .+.+.....|..|+
T Consensus        73 ~eiLIH-iGidTV~L~G~gF~~~v~~Gd~V~~G~~L~~~D~~~i~~~g~~~~t~vvitn~~~~---~~~~~~~g~V~~Gd  148 (154)
T d2gpra_          73 VEILLH-IGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTNNGGK---TLEIVKMGEVKQGD  148 (154)
T ss_dssp             CEEEEE-CSSSGGGGTTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEECSSC---CCSCBCCEEECTTC
T ss_pred             CEEEEE-EcccccccCCceeEEEecCCCEEcCCCEEEEEcHHHHHhcCCCCceEEEEEcCCCc---eEEecccCcCcCCC
Confidence            455554 4433 22 68889999999999999999999964322         2222222222   12223334688999


Q ss_pred             eEEEE
Q 012955          128 AIGIL  132 (452)
Q Consensus       128 ~l~~i  132 (452)
                      +|+.+
T Consensus       149 ~i~~i  153 (154)
T d2gpra_         149 VVAIL  153 (154)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            98876

>d1uoua3 d.41.3.1 (A:374-480) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Thymidine phosphorylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.14  E-value=0.98  Score=35.38  Aligned_cols=38  Identities=13%  Similarity=0.163  Sum_probs=31.5

Q ss_pred             ceeeEEEcCCCeEEEEE-----------------------------EeCCCCccCCCCeEEEEecch
Q 012955           99 KADMDVETFYDGILAAI-----------------------------VVPEGESAPVGAAIGILAETE  136 (452)
Q Consensus        99 K~~~ev~ap~~G~l~~i-----------------------------~v~~G~~v~~G~~l~~i~~~~  136 (452)
                      |...+|.|+.+|+|.++                             +.+.||.|..|++|+.|....
T Consensus         3 ~~~~~i~A~~~G~V~~id~~~lG~~~~~LGaGR~~d~ID~~vGi~l~~k~Gd~V~~G~~l~~ih~~~   69 (105)
T d1uoua3           3 REQEELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQRLRRGTPWLRVHRDG   69 (105)
T ss_dssp             SEEEEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTCEECTTCEEEEEEESS
T ss_pred             CeeEEEecCCCEEEEEEeHHHHHHHHHHhCCCCCCCccCccccEEEeecCCCEEcCCCeEEEEECCC
Confidence            45678888888888887                             568899999999999997543

>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Mycoplasma capricolum [TaxId: 2095]

Probab=81.00  E-value=0.96  Score=37.95  Aligned_cols=68  Identities=16%  Similarity=0.275  Sum_probs=51.2

Q ss_pred             eeEEEEcCCCCCCCceEEEEEEEcCCCCee----cCCCeEEEEEeCceeeEEEcCCCeEEEEE-----------------
Q 012955           57 KIREIFMPALSSTMTEGKIVSWIKSEGDVL----SKGESVVVVESDKADMDVETFYDGILAAI-----------------  115 (452)
Q Consensus        57 ~~~~i~~P~l~~~~~eg~I~~w~v~~Gd~V----~~gd~l~~vetdK~~~ev~ap~~G~l~~i-----------------  115 (452)
                      +..+|.-| +.     |+++.+ -+.-|.|    --||-++..=++.   .|-||++|+|..+                 
T Consensus         6 K~~~i~aP-~~-----G~vi~l-~~v~D~vFs~k~~G~G~aI~P~~~---~v~AP~dG~I~~i~~T~HAigi~t~~G~ei   75 (154)
T d2gpra_           6 KNLKVLAP-CD-----GTIITL-DEVEDEVFKERMLGDGFAINPKSN---DFHAPVSGKLVTAFPTKHAFGIQTKSGVEI   75 (154)
T ss_dssp             CCEEEECS-SS-----EEEECG-GGSSCHHHHTTSSCEEEEEEESSS---EEECSSCEEEEECCTTCSEEEEECTTSCEE
T ss_pred             cceEEEec-CC-----ceEEEc-ccCCChhhccCCCcCeEEEEecCC---EEEEecCeEEEEECCCCcEEEEEeCCCCEE
Confidence            34566666 33     888874 5666665    3478888776653   6789999998876                 


Q ss_pred             ------------------EeCCCCccCCCCeEEEEec
Q 012955          116 ------------------VVPEGESAPVGAAIGILAE  134 (452)
Q Consensus       116 ------------------~v~~G~~v~~G~~l~~i~~  134 (452)
                                        ++++||.|..|++|+.+.-
T Consensus        76 LIHiGidTV~L~G~gF~~~v~~Gd~V~~G~~L~~~D~  112 (154)
T d2gpra_          76 LLHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDL  112 (154)
T ss_dssp             EEECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECH
T ss_pred             EEEEcccccccCCceeEEEecCCCEEcCCCEEEEEcH
Confidence                              7899999999999999953

>d1uoua3 d.41.3.1 (A:374-480) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Thymidine phosphorylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.92  E-value=0.46  Score=37.36  Aligned_cols=30  Identities=20%  Similarity=0.268  Sum_probs=24.7

Q ss_pred             CCceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 012955           69 TMTEGKIVSWIKSEGDVLSKGESVVVVESD   98 (452)
Q Consensus        69 ~~~eg~I~~w~v~~Gd~V~~gd~l~~vetd   98 (452)
                      .++.+.=+.++++.||.|++||+||+|=++
T Consensus        39 ~ID~~vGi~l~~k~Gd~V~~G~~l~~ih~~   68 (105)
T d1uoua3          39 PLRLGVGAELLVDVGQRLRRGTPWLRVHRD   68 (105)
T ss_dssp             -CCSSCEEEECSCTTCEECTTCEEEEEEES
T ss_pred             ccCccccEEEeecCCCEEcCCCeEEEEECC
Confidence            345566689999999999999999998654

>d1qapa2 d.41.2.1 (A:8-129) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=80.33  E-value=0.5  Score=38.04  Aligned_cols=25  Identities=16%  Similarity=0.474  Sum_probs=22.1

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEe
Q 012955           73 GKIVSWIKSEGDVLSKGESVVVVES   97 (452)
Q Consensus        73 g~I~~w~v~~Gd~V~~gd~l~~vet   97 (452)
                      +.-++|+++.||.|++|+.|++|+-
T Consensus        77 ~i~~~~~~~DG~~v~~G~~i~~i~G  101 (122)
T d1qapa2          77 DVRLTWHVDDGDAIHANQTVFELQG  101 (122)
T ss_dssp             SSEEEESCCTTCEECTTCEEEEEEE
T ss_pred             ceEEEecccCccEEecCceEEEEEE
Confidence            3457999999999999999999984

>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Pyrimidine nucleoside phosphorylase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.23  E-value=0.57  Score=36.65  Aligned_cols=31  Identities=23%  Similarity=0.347  Sum_probs=26.1

Q ss_pred             CCceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 012955           69 TMTEGKIVSWIKSEGDVLSKGESVVVVESDK   99 (452)
Q Consensus        69 ~~~eg~I~~w~v~~Gd~V~~gd~l~~vetdK   99 (452)
                      .++.+.=+.|+++.||.|++||+|++|=+++
T Consensus        41 ~ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~   71 (103)
T d1brwa3          41 VIDLAVGIVLHKKIGDRVQKGEALATIHSNR   71 (103)
T ss_dssp             CCCTTCEEEESCCTTCEECTTCEEEEEEESS
T ss_pred             ccCcccceEEeccCCCEEcCCCeEEEEEcCC
Confidence            4555666899999999999999999997654