Citrus Sinensis ID: 012967


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450--
MLFCIYTRRQHQCIQTETLPPKQTTQEHSTKMAAASVSVFPVFVSFLLVVSSLSPVMSISIPIVSDSGHRTPANQTFRPSKHMQKLKSVNAYLKKINKPAVKTIQSPDGDVIDCVLSHLQPAFDHPELRGQKPLDPPARPKGDEREETATESLQLWTDSGESCPEGTVPIRRTTEKDILRASSIKRFGRKLRRHVRRDSTGGGHEHAVVFVNGEQYYGAKASLNVWTPRVTDGYEFSLSQIWVISGSFSHDLNTIEAGWQVSPELYGDNYPRFFTYWTTDAYQATGCYNLLCSGFVQTNNKIAIGAAISPRSSYNGRQFDIGLMIWKDPKHGHWWLQFGSGLLVGYWPAFLFSHLRSHASMVQFGGEIVNSRSSGFHTFTQMGSGHFAGEGFRRAAYFRNLQVVDWDNNLLPLTNLHLLADHSNCYDIRQGRNNVWGTYFYYGGPGRNNRCP
cEEEEEEcccccEEcccccccccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcEEcccccccccccccccHHHHHHHHHHHHHHHHccccccEEEEcccccEEEEEEcccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccHHHHHHHHccccccccccccccccccccccEEEEEEEEccEEEEEEEEEEEccccccccccccEEEEEEEEccccccccEEEEEcccccccccccccEEEEEEEEcccccccccccccccEEEccccccccccccccccccccEEEEEEEEEEccccccEEEEEccccEEEEEcHHHHHHHHccccEEEEEEEEEccccccccccccccccccccccccccEEEEEEEEEEcccccccccccEEcccccccEEEEccccccEEcEEEEEccccccccc
cEEEEEEccccccccccccccccccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccHcccccccHHHHHHHHHHHHHHHHccccEEEEEcccccEEEEEccccccccccccHcccccccccccccccccccccccccEEEEccccccccccEEEEEccHHHHHcHHHHHHccccccccccccccccccEEEEEEEcccEEEEEEEEEEEccccccccccccHEEEEEEcccccccccEEEEEEEEcHHHccccccEEEEEEEcccccccccEccccccEEEEcccEEEEEEEcccccccccEEEEEEEEEEccccccEEEEEcccEEEEcccHHHHHHHHccccEEEEccEEEcccccccccccccccccccccccccEEEEEEEEEEEcccccccHHHcEEEccccccEEEEccccccccEEEEEcccccccccc
mlfciytrrqhqciqtetlppkqttqehSTKMAAASVSVFPVFVSFLLVVSslspvmsisipivsdsghrtpanqtfrpskhmqKLKSVNAYLKKInkpavktiqspdgdvIDCVLShlqpafdhpelrgqkpldpparpkgdereETATESLQLWtdsgescpegtvpirrTTEKDILRASSIKRFGRKLRRhvrrdstgggheHAVVFVNGeqyygakaslnvwtprvtdgyefSLSQIWVISgsfshdlntieagwqvspelygdnyprfftywttdayqatgCYNLLCSGFVQTNNKIAIgaaisprssyngrqfdiglmiwkdpkhghwwlqfgsgllvgywpaFLFSHLRSHASMVQFGGeivnsrssgfhtftqmgsghfagegFRRAAYFRNLqvvdwdnnllpltnlhlladhsncydirqgrnnvwgtyfyyggpgrnnrcp
mlfciytrrqhqciqtetlppkqTTQEHSTKMAAASVSVFPVFVSFLLVVSSLSPVMSISIpivsdsghrtpanqtfrpskhmqkLKSVNAYLKKINKPAVKTIQSPDGDVIDCVLSHLQPAfdhpelrgqkpldpparpkgdEREETATESlqlwtdsgescpegtvpirrttekdilrassikrfgrklrrhvrrdstggghehAVVFVNGEQYYGAKASLNVWTPRVTDGYEFSLSQIWVISGSFSHDLNTIEAGWQVSPELYGDNYPRFFTYWTTDAYQATGCYNLLCSGFVQTNNKIAIGAaisprssynGRQFDIGLMIWKDPKHGHWWLQFGSGLLVGYWPAFLFSHLRSHASMVQFGGEIVNSRSSGFHTFTQMGSGHFAGEGFRRAAYFRNLQVVDWDNNLLPLTNLHLLADHSNCYDIRQGRNNVWGTYFyyggpgrnnrcp
MLFCIYTRRQHQCIQTETLPPKQTTQEHSTKMAAAsvsvfpvfvsfllvvsslspvmsisipivsDSGHRTPANQTFRPSKHMQKLKSVNAYLKKINKPAVKTIQSPDGDVIDCVLSHLQPAFDHPELRGQKPLDPPARPKGDEREETATESLQLWTDSGESCPEGTVPIRRTTEKDILRASSIKRFGRKLRRHVRRDSTGGGHEHAVVFVNGEQYYGAKASLNVWTPRVTDGYEFSLSQIWVISGSFSHDLNTIEAGWQVSPELYGDNYPRFFTYWTTDAYQATGCYNLLCSGFVQTNNKIAIGAAISPRSSYNGRQFDIGLMIWKDPKHGHWWLQFGSGLLVGYWPAFLFSHLRSHASMVQFGGEIVNSRSSGFHTFTQMGSGHFAGEGFRRAAYFRNLQVVDWDnnllpltnlhllADHSNCYDIRQGRNNVWGTYFYYGGPGRNNRCP
*LFCIYTRRQHQCIQ******************AASVSVFPVFVSFLLVVSSLSPVMSISIPIV************************VNAYLKKINKPAVKTIQSPDGDVIDCVLSHLQ*********************************************************************************GGHEHAVVFVNGEQYYGAKASLNVWTPRVTDGYEFSLSQIWVISGSFSHDLNTIEAGWQVSPELYGDNYPRFFTYWTTDAYQATGCYNLLCSGFVQTNNKIAIGAAISPRSSYNGRQFDIGLMIWKDPKHGHWWLQFGSGLLVGYWPAFLFSHLRSHASMVQFGGEIVNSRSSGFHTFTQMGSGHFAGEGFRRAAYFRNLQVVDWDNNLLPLTNLHLLADHSNCYDIRQGRNNVWGTYFYYGG********
MLFCIYTRRQH********************MAAASVSVFPVFVSFLLVVSSLSPVMSISIPIVSDSGH************************KKINKPAVKTIQSPDGDVIDCVLSHLQPAFDHPELR******************************GESCPEGTVPIRRTTEK***********************TGGGHEHAVVFVNGEQYYGAKASLNVWTPRVTDGYEFSLSQIWVISGSFSHDLNTIEAGWQVSPELYGDNYPRFFTYWTTDAYQATGCYNLLCSGFVQTNNKIAIGAAISPRSSYNGRQFDIGLMIWKDPKHGHWWLQFGSGLLVGYWPAFLFSHLRSHASMVQFGGEIVNSRSS****FTQMGSGHFAGEGFRRAAYFRNLQVVDWDNNLLPLTNLHLLADHSNCYDIRQGRNNVWGTYFYYGGPGRN****
MLFCIYTRRQHQCIQTETLP*************AASVSVFPVFVSFLLVVSSLSPVMSISIPIVSDSGHRTPANQTFRPSKHMQKLKSVNAYLKKINKPAVKTIQSPDGDVIDCVLSHLQPAFDHPELRGQKPLD*****************LQLWTDSGESCPEGTVPIRRTTEKDILRASSIKRFGRKLRRHVRRDSTGGGHEHAVVFVNGEQYYGAKASLNVWTPRVTDGYEFSLSQIWVISGSFSHDLNTIEAGWQVSPELYGDNYPRFFTYWTTDAYQATGCYNLLCSGFVQTNNKIAIGAAISPRSSYNGRQFDIGLMIWKDPKHGHWWLQFGSGLLVGYWPAFLFSHLRSHASMVQFGGEIVNSRSSGFHTFTQMGSGHFAGEGFRRAAYFRNLQVVDWDNNLLPLTNLHLLADHSNCYDIRQGRNNVWGTYFYYGGPGRNNRCP
MLFCIYTRRQHQCIQT************S**MAAASVSVFPVFVSFLLVVSSLSPVMSISIPIVSDSGHR****QTFRPSKHMQKLKSVNAYLKKINKPAVKTIQSPDGDVIDCVLSHLQPAFDHPELRGQKPLDPPAR**********TESLQLWTDSGESCPEGTVPIRRTTEKDILRASSIKRFGRKLRRHVRRDSTGGGHEHAVVFVNGEQYYGAKASLNVWTPRVTDGYEFSLSQIWVISGSFSHDLNTIEAGWQVSPELYGDNYPRFFTYWTTDAYQATGCYNLLCSGFVQTNNKIAIGAAISPRSSYNGRQFDIGLMIWKDPKHGHWWLQFGSGLLVGYWPAFLFSHLRSHASMVQFGGEIVNSRSSGFHTFTQMGSGHFAGEGFRRAAYFRNLQVVDWDNNLLPLTNLHLLADHSNCYDIRQGRNNVWGTYFYYGGPGRNNRC*
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MLFCIYTRRQHQCIQTETLPPKQTTQEHSTKMAAASVSVFPVFVSFLLVVSSLSPVMSISIPIVSDSGHRTPANQTFRPSKHMQKLKSVNAYLKKINKPAVKTIQSPDGDVIDCVLSHLQPAFDHPELRGQKPLDPPARPKGDEREETATESLQLWTDSGESCPEGTVPIRRTTEKDILRASSIKRFGRKLRRHVRRDSTGGGHEHAVVFVNGEQYYGAKASLNVWTPRVTDGYEFSLSQIWVISGSFSHDLNTIEAGWQVSPELYGDNYPRFFTYWTTDAYQATGCYNLLCSGFVQTNNKIAIGAAISPRSSYNGRQFDIGLMIWKDPKHGHWWLQFGSGLLVGYWPAFLFSHLRSHASMVQFGGEIVNSRSSGFHTFTQMGSGHFAGEGFRRAAYFRNLQVVDWDNNLLPLTNLHLLADHSNCYDIRQGRNNVWGTYFYYGGPGRNNRCP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query452
118489159478 unknown [Populus trichocarpa x Populus d 0.995 0.941 0.787 0.0
356513650486 PREDICTED: uncharacterized protein LOC10 0.986 0.917 0.744 0.0
255540587465 conserved hypothetical protein [Ricinus 0.909 0.883 0.854 0.0
297733740469 unnamed protein product [Vitis vinifera] 0.986 0.950 0.766 0.0
224133610472 predicted protein [Populus trichocarpa] 0.980 0.938 0.779 0.0
356564974546 PREDICTED: uncharacterized protein LOC10 0.982 0.813 0.746 0.0
224121830421 predicted protein [Populus trichocarpa] 0.902 0.969 0.822 0.0
359491226419 PREDICTED: uncharacterized protein LOC10 0.849 0.916 0.835 0.0
15240622420 uncharacterized protein [Arabidopsis tha 0.834 0.897 0.837 0.0
356507269473 PREDICTED: uncharacterized protein LOC10 0.964 0.921 0.711 0.0
>gi|118489159|gb|ABK96386.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/462 (78%), Positives = 400/462 (86%), Gaps = 12/462 (2%)

Query: 3   FCI-YTRRQHQCIQTETLPPKQTT-------QEHSTKMAAASV----SVFPVFVSFLLVV 50
           FCI +T RQ QCIQT  +   +TT         HS KMAA++      + P+FV+FLLV 
Sbjct: 17  FCILHTTRQPQCIQTVVVSAIKTTTIQRQQRHRHSKKMAASTSLSTHPMIPIFVAFLLVF 76

Query: 51  SSLSPVMSISIPIVSDSGHRTPANQTFRPSKHMQKLKSVNAYLKKINKPAVKTIQSPDGD 110
           +S    +  S  +VSDSG R  ANQTFRPSK + +L+  NAYLKKINKPAVKTIQSPDGD
Sbjct: 77  ASSVSPVLSSPALVSDSGSRLLANQTFRPSKEVLRLRRANAYLKKINKPAVKTIQSPDGD 136

Query: 111 VIDCVLSHLQPAFDHPELRGQKPLDPPARPKGDEREETATESLQLWTDSGESCPEGTVPI 170
           VI CVLSHLQPAFDHPEL+G+KPLDPP RP+ +E  ET  ES QLWTDSGESCPEGTVPI
Sbjct: 137 VIHCVLSHLQPAFDHPELKGKKPLDPPERPRSNETRETVAESYQLWTDSGESCPEGTVPI 196

Query: 171 RRTTEKDILRASSIKRFGRKLRRHVRRDSTGGGHEHAVVFVNGEQYYGAKASLNVWTPRV 230
           RRTT KD+LRASS+ RFGRKLRRHVRRDSTG GHEHAVVFVNG+QY+GAKAS+NVW+P+V
Sbjct: 197 RRTTVKDVLRASSVNRFGRKLRRHVRRDSTGSGHEHAVVFVNGDQYFGAKASINVWSPQV 256

Query: 231 TDGYEFSLSQIWVISGSFSHDLNTIEAGWQVSPELYGDNYPRFFTYWTTDAYQATGCYNL 290
           T  YEFSLSQIWVISGSF +DLNTIEAGWQVSP+LYGD YPRFFTYWTTDAYQATGCYNL
Sbjct: 257 TSEYEFSLSQIWVISGSFGNDLNTIEAGWQVSPDLYGDGYPRFFTYWTTDAYQATGCYNL 316

Query: 291 LCSGFVQTNNKIAIGAAISPRSSYNGRQFDIGLMIWKDPKHGHWWLQFGSGLLVGYWPAF 350
           LCSGFVQTNNKIAIGAAISPRSSYNGRQFDIGL +WKDPKHG+WWL++GSGLLVGYWPAF
Sbjct: 317 LCSGFVQTNNKIAIGAAISPRSSYNGRQFDIGLTVWKDPKHGNWWLEYGSGLLVGYWPAF 376

Query: 351 LFSHLRSHASMVQFGGEIVNSRSSGFHTFTQMGSGHFAGEGFRRAAYFRNLQVVDWDNNL 410
           LFSHLRSHASMVQFGGEIVNSRS+G+HT TQMGSGHFA EGF +A+YFRNLQVVDWDNNL
Sbjct: 377 LFSHLRSHASMVQFGGEIVNSRSAGYHTSTQMGSGHFADEGFGKASYFRNLQVVDWDNNL 436

Query: 411 LPLTNLHLLADHSNCYDIRQGRNNVWGTYFYYGGPGRNNRCP 452
           LPLTNLHLLADH NCY+IRQGRNNVWGTYFYYGGPGRN RCP
Sbjct: 437 LPLTNLHLLADHPNCYNIRQGRNNVWGTYFYYGGPGRNVRCP 478




Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513650|ref|XP_003525524.1| PREDICTED: uncharacterized protein LOC100782442 [Glycine max] Back     alignment and taxonomy information
>gi|255540587|ref|XP_002511358.1| conserved hypothetical protein [Ricinus communis] gi|223550473|gb|EEF51960.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|297733740|emb|CBI14987.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224133610|ref|XP_002321617.1| predicted protein [Populus trichocarpa] gi|222868613|gb|EEF05744.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356564974|ref|XP_003550720.1| PREDICTED: uncharacterized protein LOC100820129 [Glycine max] Back     alignment and taxonomy information
>gi|224121830|ref|XP_002318683.1| predicted protein [Populus trichocarpa] gi|222859356|gb|EEE96903.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359491226|ref|XP_002278355.2| PREDICTED: uncharacterized protein LOC100246848 [Vitis vinifera] Back     alignment and taxonomy information
>gi|15240622|ref|NP_199826.1| uncharacterized protein [Arabidopsis thaliana] gi|17386118|gb|AAL38605.1|AF446872_1 AT5g50150/MPF21_17 [Arabidopsis thaliana] gi|10177226|dbj|BAB10301.1| unnamed protein product [Arabidopsis thaliana] gi|15529145|gb|AAK97667.1| AT5g50150/MPF21_17 [Arabidopsis thaliana] gi|332008521|gb|AED95904.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356507269|ref|XP_003522391.1| PREDICTED: uncharacterized protein LOC100803280 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query452
TAIR|locus:2170091420 AT5G50150 "AT5G50150" [Arabido 0.834 0.897 0.811 2e-175
TAIR|locus:2026815465 AT1G70550 [Arabidopsis thalian 0.851 0.827 0.735 3.1e-163
TAIR|locus:2019933467 AT1G10750 [Arabidopsis thalian 0.851 0.824 0.707 5.3e-159
TAIR|locus:2028025409 AT1G23340 "AT1G23340" [Arabido 0.851 0.941 0.698 1.1e-156
TAIR|locus:2092870419 AT3G13510 [Arabidopsis thalian 0.811 0.875 0.563 4.6e-121
TAIR|locus:2035666422 AT1G55360 [Arabidopsis thalian 0.811 0.869 0.562 1.4e-119
TAIR|locus:2167121420 AT5G56530 "AT5G56530" [Arabido 0.800 0.861 0.554 4.4e-116
TAIR|locus:2146258430 AT5G18460 [Arabidopsis thalian 0.738 0.776 0.560 1.6e-104
TAIR|locus:2050487445 AT2G44210 [Arabidopsis thalian 0.659 0.669 0.551 1.4e-99
TAIR|locus:2050528403 AT2G44220 [Arabidopsis thalian 0.794 0.890 0.497 1e-98
TAIR|locus:2170091 AT5G50150 "AT5G50150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1704 (604.9 bits), Expect = 2.0e-175, P = 2.0e-175
 Identities = 310/382 (81%), Positives = 338/382 (88%)

Query:    74 NQT-FRPSKHMQKLKSVNAYLKKINKPAVKTIQSPDGDVIDCVLSHLQPAFDHPELRGQK 132
             NQT FRP++ +QKL+ V AYL KINKP++KTI SPDGDVI+CV SHLQPAFDHP+L+GQK
Sbjct:    41 NQTSFRPNREIQKLRRVEAYLSKINKPSIKTIHSPDGDVIECVPSHLQPAFDHPQLQGQK 100

Query:   133 PLDPPARP-KGDEREETATESL-QLWTDSGESCPEGTVPIRRTTEKDILRASSIKRFGRK 190
             PLD P RP KG+E   T  ES  QLW+ SGESCP G++PIR+TT+ D+LRA+S++RFGRK
Sbjct:   101 PLDSPYRPSKGNET--TYEESFNQLWSMSGESCPIGSIPIRKTTKNDVLRANSVRRFGRK 158

Query:   191 LRRHVRRDSTGGGHEHAVVFVNGEQYYGAKASLNVWTPRVTDGYEFSLSQIWVISGSFSH 250
             LRR +RRDS+GGGHEHAVVFVNGEQYYGAKAS+NVW PRVTD YEFSLSQIW+ISGSF H
Sbjct:   159 LRRPIRRDSSGGGHEHAVVFVNGEQYYGAKASINVWAPRVTDAYEFSLSQIWLISGSFGH 218

Query:   251 DLNTIEAGWQVSPELYGDNYPRFFTYWTTDAYQATGCYNLLCSGFVQTNNKIAIGAAISP 310
             DLNTIEAGWQVSPELYGDNYPRFFTYWTTDAYQATGCYNLLCSGFVQTNNKIAIGAAISP
Sbjct:   219 DLNTIEAGWQVSPELYGDNYPRFFTYWTTDAYQATGCYNLLCSGFVQTNNKIAIGAAISP 278

Query:   311 RSSYNGRQFDIGLMIWKDPKHGHWWLQFGSGLLVGYWPAFLFSHLRSHASMVQFGGEIVN 370
             RSSYNGRQFDIGLMIWKDPKHGHWWL+ G+GLLVGYWPAFLFSHLRSHASMVQFGGE+VN
Sbjct:   279 RSSYNGRQFDIGLMIWKDPKHGHWWLELGNGLLVGYWPAFLFSHLRSHASMVQFGGEVVN 338

Query:   371 SRSSGFHTFTQMGSGHFAGEGFRRAAYFRNLQVVDWDXXXXXXXXXXXXADHSNCYDIRQ 430
             SRSSG HT TQMGSGHFA EGF +AAYFRNLQVVDWD            ADH  CYDIRQ
Sbjct:   339 SRSSGAHTGTQMGSGHFADEGFEKAAYFRNLQVVDWDNNLLPLKNLHVLADHPACYDIRQ 398

Query:   431 GRNNVWGTYFYYGGPGRNNRCP 452
             G+NNVWGTYFYYGGPGRN RCP
Sbjct:   399 GKNNVWGTYFYYGGPGRNPRCP 420




GO:0003674 "molecular_function" evidence=ND
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2026815 AT1G70550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019933 AT1G10750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028025 AT1G23340 "AT1G23340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092870 AT3G13510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035666 AT1G55360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2167121 AT5G56530 "AT5G56530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2146258 AT5G18460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050487 AT2G44210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050528 AT2G44220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query452
pfam03080230 pfam03080, DUF239, Domain of unknown function (DUF 1e-126
pfam14365117 pfam14365, DUF4409, Domain of unknown function (DU 4e-49
>gnl|CDD|217358 pfam03080, DUF239, Domain of unknown function (DUF239) Back     alignment and domain information
 Score =  365 bits (938), Expect = e-126
 Identities = 131/233 (56%), Positives = 170/233 (72%), Gaps = 6/233 (2%)

Query: 216 YYGAKASLNVWTPRVTDGYEFSLSQIWVISGSFSHDLNTIEAGWQVSPELYGDNYPRFFT 275
           YYGA+A++NV+ P+V +  +FSLSQIW+++G  + DLN+I+AGWQV+P LYGDN  R FT
Sbjct: 1   YYGAQATINVYNPKVQNPNQFSLSQIWIVNGPENGDLNSIQAGWQVNPSLYGDNRTRLFT 60

Query: 276 YWTTDAYQATGCYNLLCSGFVQTNNKIAIGAAISPRSSYNGRQFDIGLMIWKDPKHGHWW 335
           YWT D Y  TGCYNLLC GFVQ ++KIA+G AISP S Y G+Q+DI L+IWKDPK G+WW
Sbjct: 61  YWT-DGYNKTGCYNLLCPGFVQVSSKIALGGAISPVSVYGGKQYDITLLIWKDPKTGNWW 119

Query: 336 LQFGSGLLVGYWPAFLFSHLRSHASMVQFGGEIVNSRSSGFHTFTQMGSGHFAGEGFRRA 395
           L +G+  ++GYWP+ LF+HL S A+MV++GGE+ +    G H    MGSGHF  EGF +A
Sbjct: 120 LTYGNNTVIGYWPSSLFTHLSSGATMVEWGGEVYS--PPGGHPSPPMGSGHFPEEGFGKA 177

Query: 396 AYFRNLQVVDWDNNLLP--LTNLHLLADHSNCYDIRQGRNN-VWGTYFYYGGP 445
           AYFRN++VVD DN L+      L   AD  NCY+++ G     WG  FYYGGP
Sbjct: 178 AYFRNIKVVDEDNKLVKPDEDKLETFADSPNCYNVKDGGYTGEWGHAFYYGGP 230


This is a family of plant and bacterial proteins, a small number of which are putative carboxy-terminal peptidases. Length = 230

>gnl|CDD|206533 pfam14365, DUF4409, Domain of unknown function (DUF4409) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 452
PF03080229 DUF239: Domain of unknown function (DUF239); Inter 100.0
PF14365117 DUF4409: Domain of unknown function (DUF4409) 100.0
>PF03080 DUF239: Domain of unknown function (DUF239); InterPro: IPR004314 This is a family of plant proteins, a small number of which are putative peptidases (see for example Q9XIN9 from SWISSPROT) Back     alignment and domain information
Probab=100.00  E-value=5.9e-83  Score=617.69  Aligned_cols=227  Identities=55%  Similarity=1.086  Sum_probs=216.2

Q ss_pred             EeeEEEEEeeecCcccCCCCccceehhhhcCcCCCCccEEEEeeeEcccccCCCccEEEEEEecCCccccceeccccCee
Q 012967          216 YYGAKASLNVWTPRVTDGYEFSLSQIWVISGSFSHDLNTIEAGWQVSPELYGDNYPRFFTYWTTDAYQATGCYNLLCSGF  295 (452)
Q Consensus       216 yyGa~a~inVw~P~V~~~~qfSlsqiwv~~G~~~~~~nsIeaGW~V~P~lYGD~~~rlF~yWT~D~y~~TGCyNl~CpGF  295 (452)
                      |||++|+||||+|+|+..+|||++||||.+|...+.+|+|||||+|+|+||||++||||+|||+|+|++||||||+||||
T Consensus         1 y~G~~a~i~v~~p~v~~~~q~S~~~i~i~~g~~~~~~~~i~~GW~V~P~lygd~~~~lf~~wt~d~~~~tgCyN~~CpGF   80 (229)
T PF03080_consen    1 YYGARATISVWNPKVQQPDQFSLSQIWISNGSDDDSLNSIEAGWQVYPSLYGDSRTRLFVYWTADGYQKTGCYNLDCPGF   80 (229)
T ss_pred             CeeeEEEEECcCCccCCccceeheeEEEEecCCCCCCcEEEEeeeccccccCCCceEEEEEEEccCCCCcceeCCCCCcE
Confidence            79999999999999998779999999999997557799999999999999999999999999999999999999999999


Q ss_pred             EEccCccccCcccccccccCCceeEEEEEEecCCCCCCeEEEeCCCeeeeeechhhhhhhhcCcceEEEccEEEcCCCCC
Q 012967          296 VQTNNKIAIGAAISPRSSYNGRQFDIGLMIWKDPKHGHWWLQFGSGLLVGYWPAFLFSHLRSHASMVQFGGEIVNSRSSG  375 (452)
Q Consensus       296 VQvs~~i~lG~~i~pvS~~~G~q~~i~i~I~kDp~tGnWWL~~g~~~~IGYWP~sLFt~L~~~A~~V~wGGeV~~~~~~~  375 (452)
                      |||+++|+||++|+|+|+++|.|++|+|.|+||+++|||||.++ ++.|||||++||++|+++|+.|+|||||++++  +
T Consensus        81 Vq~s~~i~~G~~~~~~S~~gG~q~~i~~~i~kD~~~gnWWL~~~-~~~IGYwP~sLF~~l~~~A~~v~wGGeV~~~~--~  157 (229)
T PF03080_consen   81 VQVSSSIALGAAISPVSTYGGKQYEITLSIFKDPKSGNWWLYYG-GEPIGYWPKSLFTSLADGATEVEWGGEVYSPP--G  157 (229)
T ss_pred             EEeCCccccceeeCCCccCCCceEEEEEEEEecCCCccEEEEEe-cceeeeehHHhhhhhhcCceEEEEEEEEeCCC--C
Confidence            99999999999999999999999999999999999999999998 57999999999999999999999999999865  4


Q ss_pred             CCCCCCCCCCCCCCCCCCceEEEeceEEEeCCCCccccC--cccccccCCCCeeeecCCCCceecEEEEcCC
Q 012967          376 FHTFTQMGSGHFAGEGFRRAAYFRNLQVVDWDNNLLPLT--NLHLLADHSNCYDIRQGRNNVWGTYFYYGGP  445 (452)
Q Consensus       376 ~~tsppMGSG~fp~~g~~kAAy~rni~vvd~~~~~~~~~--~l~~~~d~p~CY~v~~~~~~~~G~~f~yGGP  445 (452)
                      .|++|||||||||++|+++|||||||+++|.+++..++.  .+++++|+|+||++....+.+||.+||||||
T Consensus       158 ~~~sppMGSG~fp~~g~~~aAy~~~i~~~d~~~~~~~~~~~~~~~~~~~~~CY~~~~~~~~~~g~~f~yGGP  229 (229)
T PF03080_consen  158 RHTSPPMGSGHFPSEGFGKAAYFRNIQVVDSNGQFVDPNDDLLEVFADNPSCYDVSYIGDGDWGYYFFYGGP  229 (229)
T ss_pred             CCCCCCccCCcCCCCCCCccEEEEEEEEEcCCCCCcCCcccceeEccCCCCceeEeeccCCCcccEEEeeCC
Confidence            589999999999999999999999999999999988774  4678999999999998777889999999999



However, the structure of the protein PDB3:3eu8 has an alpha-alpha toroid fold and is similar to a glucoamylase, PDB:1ayx. Such glucoamylases are involved in breaking down complex sugars (e.g. starch). The biologically relevant state is likely to be monomeric. The putative active site is located at the centre of the toroid with a well defined large cavity. Further structural comparisons also show relationships with other glycohydrolases.

>PF14365 DUF4409: Domain of unknown function (DUF4409) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00