Citrus Sinensis ID: 012974

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450--
Protein Sequence
MTKTLISSPPFVGTPLPSPSSSLSRHGLHRLPNRRLASTRVRLSFQEIPPILSLDSSIDLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDVQTMNSASDSEGESDGEKGQGVLEEAYASNRSKQVPDPSRPRKSKRSKRKRAV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccHHHccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHcccccccccccccccccccccccccHHHHHHHHHHHccccccccHHcHHHHHHcccccccccccccccHEcccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mtktlissppfvgtplpspssslsrhglhrlpnrrlasTRVRLsfqeippilsldssidlnsvFSRTESLLYTLADAAVSldsasggaastsadgatqknggwfGFISEAMEFVLKILKDgidavhvpySYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRqagvnplagclptlatIPVWIGLYQALSNVaneglltegffwipslsgpttiaarqsgsgiswllpfdghpplgwhdtaaYLVLPVLLVVSQYasmelmkppqtddpaqkntlLVFKFLPLMIGYfslsvpsglsiYWFTNNVLSTAQQVWLRKlggakpvvtENASEIITAGrakrsvsqpsragdrFRQLKEEEKGKKlnkalpaedvqtmnsasdsegesdgekgQGVLEEAYasnrskqvpdpsrprkskrskrkrav
Flexible Loop (DISEMBL)
mtktlissppfvgtplpspssslsrhglhrlpnrrlastrvRLSFQeippilsldssidLNSVFSRTESLLYTLADAAVSLDSASGGaastsadgatqkNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMkppqtddpaQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASeiitagrakrsvsqpsragdrfrqlkeeekgkklnkalpaedvqtmnsasdsegesdgEKGQGVLEEayasnrskqvpdpsrprkskrskrkrav
Low Complexity Region (SEG)
MTKTLISSPPFVGTplpspssslsrhglhrlpNRRLASTRVRLSFQEippilsldssidlNSVFSRTESLLYtladaavsldsasggaastsadgatQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFDGHPPLGWHDTAAYlvlpvllvvSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSRAGDRFRQlkeeekgkklnkalPAEDVQTMNSAsdsegesdgeKGQGVLEEAYASNRSKQVPDpsrprkskrskrkrAV
Disordered region (IsUnstruct)
***************************************RVRLSFQEIPPILSLDSSIDLNSVFSRTESLLYTLADAAVS*******************NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFDGHPPLGWHDTAAYLVLPVLLVVSQYASM**************NTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENA**I*********************************************************************************************
Disordered Region (DISOPRED)
******SSPPFVGTPLPSPSSSLS***LHRLPNRRLASTRVRLSFQEIPPILSLDSSIDLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG****IQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFDGHPPLGWHDTAAYLVLPVLLVVSQYA********************VFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGA********************************************************************************************************
Disordered Region (DISEMBL)
MTKTLISSPPFVGT************GLHRLPNRRLASTRVRLSFQEIPPILSLDSSIDLNSVFSRTESLLYTLADAAVSLD*************ATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIIT*****************FRQLKEEEKGKKLNKALPAEDV******************QGVLEEAY**************************
Disordered Region (DISPRO)
**********FVGTPLP*********GLHRLPNRRLASTRVRLSFQEIPPILSLDSSIDLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKP******************************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTKTLISSPPFVGTPLPSPSSSLSRHGLHRLPNRRLASTRVRLSFQEIPPILSLDSSIDLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDVQTMNSASDSEGESDGEKGQGVLEEAYASNRSKQVPDPSRPRKSKRSKRKRAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	452	2.2.26 [Sep-21-2011]
Q9FY06	442	Inner membrane protein PP	N/A	no	0.926	0.947	0.747	1e-174
Q8LBP4	462	Inner membrane protein AL	yes	no	0.842	0.824	0.751	1e-172
Q9FYL3	499	ALBINO3-like protein 1, c	no	no	0.763	0.691	0.586	1e-115
Q8LKI3	422	Inner membrane ALBINO3-li	N/A	no	0.608	0.651	0.565	2e-89
Q8S339	495	Inner membrane ALBINO3-li	N/A	no	0.581	0.531	0.574	3e-86
A0LLH3	553	Membrane protein insertas	yes	no	0.484	0.396	0.332	6e-33
B3QYV6	586	Membrane protein insertas	yes	no	0.482	0.372	0.338	2e-31
P60037	536	Membrane protein insertas	yes	no	0.400	0.337	0.339	2e-31
Q1QH68	609	Membrane protein insertas	yes	no	0.548	0.407	0.305	3e-30
O66103	622	Membrane protein insertas	yes	no	0.440	0.319	0.361	3e-30

>sp|Q9FY06|PPF1_PEA Inner membrane protein PPF-1, chloroplastic OS=Pisum sativum GN=PPF-1 PE=2 SV=2

 Score =  613 bits (1580), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 328/439 (74%), Positives = 362/439 (82%), Gaps = 20/439 (4%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHRL--PNRRLASTRVRLSFQEIPPILSLDSSI 58
           M KTLISSP F+GTPLPS         LHR   PNR    T+V+ SF ++PPI S+  S+
Sbjct: 1   MAKTLISSPSFLGTPLPS---------LHRTFSPNRTRLFTKVQFSFHQLPPIQSVSHSV 51

Query: 59  DLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKIL 118
           DL+ +F+R E LLYTLADA V+        A+ S D A QKNGGWFGFIS+ MEFVLK+L
Sbjct: 52  DLSGIFARAEGLLYTLADATVAA------DAAASTDVAAQKNGGWFGFISDGMEFVLKVL 105

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           KDG+ +VHVPYSYGFAIILLTVIVK AT PLTK+QVESTLAMQNLQPKIKAIQ+RYAGNQ
Sbjct: 106 KDGLSSVHVPYSYGFAIILLTVIVKAATLPLTKQQVESTLAMQNLQPKIKAIQERYAGNQ 165

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLY QAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGF WIPSL G
Sbjct: 166 ERIQLETSRLYTQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFLWIPSLGG 225

Query: 239 PTTIAARQSGSGISWLLPF-DGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDP 297
           PT+IAARQSGSGISWL PF DGHP LGW+DTAAYLVLPVLL+VSQY SME+MKPPQT+DP
Sbjct: 226 PTSIAARQSGSGISWLFPFVDGHPLLGWYDTAAYLVLPVLLIVSQYVSMEIMKPPQTNDP 285

Query: 298 AQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENAS 357
            QKNTLL+FKFLPLMIGYFSLSVPSGL+IYWFTNNVLSTAQQVWLRKLGGAKP V ENA 
Sbjct: 286 NQKNTLLIFKFLPLMIGYFSLSVPSGLTIYWFTNNVLSTAQQVWLRKLGGAKPAVNENAG 345

Query: 358 EIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDVQTMNSASDSEGESDGE- 416
            IITAG+AKRS S+P + G+RFRQLKEEEK KKL KALP E+VQ + SAS S   SD E 
Sbjct: 346 GIITAGQAKRSASKPEKGGERFRQLKEEEKKKKLIKALPVEEVQPLASASASNDGSDVEN 405

Query: 417 -KGQGVLEEAYASNRSKQV 434
            K Q V EE+  S  S++V
Sbjct: 406 NKEQEVTEESNTSKVSQEV 424

May be required for the insertion of some integral membrane proteins into the chloroplast thylakoid membrane. May play a role in inhibiting senescence.
Pisum sativum (taxid: 3888)

>sp|Q8LBP4|ALB3_ARATH Inner membrane protein ALBINO3, chloroplastic OS=Arabidopsis thaliana GN=ALB3 PE=1 SV=2

 Score =  603 bits (1556), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 299/398 (75%), Positives = 333/398 (83%), Gaps = 17/398 (4%)

Query: 16  LPSPSSSLSRHGL----------HRLPNRRL--ASTRVRLSFQEIPPILSLDSSIDLNSV 63
           L  PSSSL   G+          +R  N +L   ST VR S  EIPP   LDSS+D+ ++
Sbjct: 17  LIKPSSSLRHSGVGGGGTAQFLPYRSNNNKLFTTSTTVRFSLNEIPPFHGLDSSVDIGAI 76

Query: 64  FSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGID 123
           F+R ESLLYT+ADAAV        +  T+   A QK+GGWFGFIS+AME VLKILKDG+ 
Sbjct: 77  FTRAESLLYTIADAAV----VGADSVVTTDSSAVQKSGGWFGFISDAMELVLKILKDGLS 132

Query: 124 AVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQL 183
           AVHVPY+YGFAIILLT+IVK AT+PLTK+QVESTLAMQNLQPKIKAIQQRYAGNQERIQL
Sbjct: 133 AVHVPYAYGFAIILLTIIVKAATYPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQERIQL 192

Query: 184 ETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIA 243
           ETSRLY+QAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGL TEGFFWIPSL GPT+IA
Sbjct: 193 ETSRLYKQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLFTEGFFWIPSLGGPTSIA 252

Query: 244 ARQSGSGISWLLPF-DGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNT 302
           ARQSGSGISWL PF DGHPPLGW+DT AYLVLPVLL+ SQY SME+MKPPQTDDPAQKNT
Sbjct: 253 ARQSGSGISWLFPFVDGHPPLGWYDTVAYLVLPVLLIASQYVSMEIMKPPQTDDPAQKNT 312

Query: 303 LLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIITA 362
           LLVFKFLPLMIGYF+LSVPSGLSIYW TNNVLSTAQQV+LRKLGGAKP + ENAS+II+A
Sbjct: 313 LLVFKFLPLMIGYFALSVPSGLSIYWLTNNVLSTAQQVYLRKLGGAKPNMDENASKIISA 372

Query: 363 GRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDV 400
           GRAKRS++QP  AG+RFRQLKE+EK  K NKA+  + V
Sbjct: 373 GRAKRSIAQPDDAGERFRQLKEQEKRSKKNKAVAKDTV 410

Required for the insertion of some light harvesting chlorophyll-binding proteins (LHCP) into the chloroplast thylakoid membrane. Required for the insertion of LHCB1, LHCB4.1 and LHCB5 proteins into thylakoid membrane, while it is not required for insertion of proteins PsbX, PsbW and PsbY.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FYL3|ALB31_ARATH ALBINO3-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=ALB3L1 PE=2 SV=3

 Score =  414 bits (1065), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/380 (58%), Positives = 278/380 (73%), Gaps = 35/380 (9%)

Query: 68  ESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHV 127
           E+LLYT+ADAAVS        A T+    T ++  WF  I+  ME +LK+LKDG+  VHV
Sbjct: 63  ENLLYTIADAAVSSSETFESVAGTTTK--TTQSNDWFSGIANYMETILKVLKDGLSTVHV 120

Query: 128 PYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSR 187
           PYSYGFAIILLTV+VK ATFPLTKKQVES +AM++L P+IKAIQ+RYAG+QE+IQLET+R
Sbjct: 121 PYSYGFAIILLTVLVKAATFPLTKKQVESAMAMKSLTPQIKAIQERYAGDQEKIQLETAR 180

Query: 188 LYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQS 247
           LY+ AG+NPLAGCLPTLATIPVWIGLY+ALSNVA+EGLLTEGFFWIPSL+GPTT+AARQ+
Sbjct: 181 LYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTVAARQN 240

Query: 248 GSGISWLLPF-DGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVF 306
           GSGISWL PF +GHPPLGW DT AYLVLP+LLV SQY S+++M+  Q++DPA K++  V 
Sbjct: 241 GSGISWLFPFIEGHPPLGWPDTLAYLVLPLLLVFSQYLSIQIMQSSQSNDPAMKSSQAVT 300

Query: 307 KFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAK----------------- 349
           K LPLMIGYF+LSVPSGLS+YW TNN+LSTAQQVWL+K GGAK                 
Sbjct: 301 KLLPLMIGYFALSVPSGLSLYWLTNNILSTAQQVWLQKYGGAKNPVEKFTNLVTKEDKTQ 360

Query: 350 --------PVVTENASEI-ITAGRAKRSVS-QPSRAGDRFRQLKEEEKGKK-----LNKA 394
                   P+V ++ SE+ I   +    V+ +  + G+RFR LKE+E  ++       KA
Sbjct: 361 QIEKSFSEPLVQKSVSELKIPREKGGEKVTPECPKPGERFRLLKEQEAKRRREKEERQKA 420

Query: 395 LPAEDVQTMNSASDSEGESD 414
             A   Q  + A + + +SD
Sbjct: 421 EAALSNQNTDKAHEQDEKSD 440

Probably required for the insertion of integral membrane proteins into the chloroplast thylakoid membranes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LKI3|ALB32_CHLRE Inner membrane ALBINO3-like protein 2, chloroplastic OS=Chlamydomonas reinhardtii GN=ALB3.2 PE=2 SV=1

 Score =  330 bits (846), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 168/297 (56%), Positives = 215/297 (72%), Gaps = 22/297 (7%)

Query: 97  TQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVES 156
           T   GG    +++  EFVL+ L +G+++  +PYSYGFAII LTV+VKVATFPLT+KQVES
Sbjct: 67  TLAEGGPIDVLAQFFEFVLQTLDEGLESAKIPYSYGFAIIALTVLVKVATFPLTQKQVES 126

Query: 157 TLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQA 216
           TL++Q LQP++K +Q +YA + E +QLET+RLY++AGVNPLAGC PTLATIPV+IGLY A
Sbjct: 127 TLSLQALQPRVKELQAKYADDPENLQLETARLYKEAGVNPLAGCFPTLATIPVFIGLYNA 186

Query: 217 LSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFD-GHPPLGWHDTAAYLVLP 275
           LSN A EGLLTEGFFWIPSL GPTTI     G G+ WL+PF+ G PP+GW + AAYLV+P
Sbjct: 187 LSNAAKEGLLTEGFFWIPSLGGPTTI-----GGGLEWLVPFENGAPPVGWANAAAYLVMP 241

Query: 276 VLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLS 335
           VLLV SQYAS +++      DP+Q+    + KFLPLMIG+FSL+VPSGL++YWF NN+LS
Sbjct: 242 VLLVASQYASQKIISSQNNQDPSQQQAQAILKFLPLMIGWFSLNVPSGLTLYWFVNNLLS 301

Query: 336 TAQQVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSRAGDRFRQLK-EEEKGKKL 391
           T QQ++L      K  V  N  E I A         P+ AG     +K +EE+ KK+
Sbjct: 302 TGQQLYL------KATVKVNIPEAIKA---------PATAGSSTPIVKPKEERVKKV 343

Required for the insertion of some light-harvesting complexes (LHC) proteins into the chloroplast thylakoid membrane. Essential for the assembly and activity of LHC I and II. Its function is probably partly distinct from that of ALB3.1.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q8S339|ALB31_CHLRE Inner membrane ALBINO3-like protein 1, chloroplastic OS=Chlamydomonas reinhardtii GN=ALB3.1 PE=3 SV=1

 Score =  319 bits (817), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 158/275 (57%), Positives = 212/275 (77%), Gaps = 12/275 (4%)

Query: 88  AASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATF 147
           A  ++A  A Q+ GGW   +++A+E VL  L++G+D +HVPYSYG++IILLT+IVK+ T+
Sbjct: 98  AVDSAAGAAPQRAGGWVAPVADALEQVLYALQEGLDKLHVPYSYGYSIILLTLIVKLLTY 157

Query: 148 PLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATI 207
           PLTK+QVES +A+Q L+P+I  I+ R+  ++++IQ ETS LY QAGVNPLAGCLPTLATI
Sbjct: 158 PLTKQQVESAMAVQALKPRIDLIKDRFGEDKDKIQKETSVLYEQAGVNPLAGCLPTLATI 217

Query: 208 PVWIGLYQALSNVANEGLL-TEGFFWIPSLSGPTTIAARQSGSGISWLLPF--DGHPPLG 264
           P++IGL+ +L+NVAN+GLL T+GF+++PSL+GPTT+A RQSG G SWL P   DG PP+G
Sbjct: 218 PIFIGLFSSLTNVANDGLLDTQGFYFVPSLAGPTTMAMRQSGLGTSWLWPLGPDGAPPIG 277

Query: 265 WHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKN-----TLLVFKFLPLMIGYFSLS 319
           W D AAYL LP+LLV  QYAS  +  PP   DP  +N      LLV  FLPLM+G+FSL+
Sbjct: 278 WEDAAAYLTLPLLLVAVQYASSSVTSPPI--DPKDENANTQRALLV--FLPLMVGWFSLN 333

Query: 320 VPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTE 354
           VP+GLS+Y+  N VLS+A Q++L+KLGGA  V+ E
Sbjct: 334 VPAGLSLYYLANTVLSSAIQIYLKKLGGANVVMNE 368

Required for the insertion of some light-harvesting complexes (LHC) proteins into the chloroplast thylakoid membrane. Essential for the assembly and activity of LHC I and II. Its function is probably partly distinct from that of ALB3.2.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|A0LLH3|YIDC_SYNFM Membrane protein insertase YidC OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=yidC PE=3 SV=1

 Score =  142 bits (358), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 83/250 (33%), Positives = 135/250 (54%), Gaps = 31/250 (12%)

Query: 96  ATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVE 155
           A+  + GWF FI++ + +VL             +++G AIILLT+++K+  +PLT+K  +
Sbjct: 332 ASAVDYGWFTFIAKPLVYVLDWF------YRYTHNWGVAIILLTIVIKILFWPLTQKSYQ 385

Query: 156 STLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQ 215
           S   M+ +QPK+  I+++Y G++E++  E   LYR   VNP+ GCLP L  IPV+  LY+
Sbjct: 386 SMQKMKKIQPKMTQIREKYKGDREKMNQELMGLYRTYKVNPMGGCLPMLLQIPVFFALYR 445

Query: 216 ALSNVANEGLLTEGF-FWIPSLSGPTTIAARQSGSGISWLLPFDGHPPLGWHDTAAYLVL 274
            L+      L  E F  WI  L+ P  +        I + +P+ G  P          VL
Sbjct: 446 MLNGAVE--LRHEPFMLWIDDLTAPDRLP-------IGFDIPYLGGLP----------VL 486

Query: 275 PVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVL 334
            +L+ ++ +   ++   P   DP Q   +++   +P+M   F ++ PSGL +YW  NNVL
Sbjct: 487 TLLMGITMFIQQKMT--PSAGDPRQDQIMMI---MPVMFTVFFVNFPSGLVLYWLVNNVL 541

Query: 335 STAQQVWLRK 344
           S AQQ W+ +
Sbjct: 542 SIAQQYWVNR 551

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) (taxid: 335543)

>sp|B3QYV6|YIDC_CHLT3 Membrane protein insertase YidC OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=yidC PE=3 SV=1

 Score =  137 bits (345), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/245 (33%), Positives = 133/245 (54%), Gaps = 27/245 (11%)

Query: 114 VLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQR 173
           +   L + +D      SYG  IIL  + +K+ T+PLT    +S   M  LQP++KAIQ++
Sbjct: 359 IFNFLNNHVD------SYGVIIILFALFIKLVTYPLTMASTKSMKKMAALQPQLKAIQEQ 412

Query: 174 YAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWI 233
           Y  N E++Q E S +YR+AGVNPL GCLPT+  +P+   ++    +     L  EGF W 
Sbjct: 413 YKDNPEKLQAEISGIYREAGVNPLGGCLPTVIQMPLLFAMFYVFRSSIQ--LRQEGFLWS 470

Query: 234 PSLSGPTTIAARQSGSGISWLLPFDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQ 293
             LS P +I            LPF   P  G H +    V+P+L+ V+ +   +L    Q
Sbjct: 471 NDLSVPDSILD----------LPF-SIPLYGDHVS----VIPILMGVAVFFQQKLTPSTQ 515

Query: 294 TDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVT 353
           T+D  +    +++ F  +M+ +F+ ++PSGL +Y+   NV S AQQ ++ +    +PVV 
Sbjct: 516 TNDQMK---FMMYLFPGMMLIFFN-NMPSGLGLYYLMFNVFSIAQQFYINQTTETEPVVL 571

Query: 354 ENASE 358
           ++ S+
Sbjct: 572 KDKSK 576

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Chloroherpeton thalassium (strain ATCC 35110 / GB-78) (taxid: 517418)

>sp|P60037|YIDC_WOLSU Membrane protein insertase YidC OS=Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W) GN=yidC PE=3 SV=1

 Score =  137 bits (344), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 117/215 (54%), Gaps = 34/215 (15%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY 189
           ++G+AI+LLT++V++  FPLT K + S   ++++ PK+K IQ++Y G+ +++Q+    LY
Sbjct: 338 NWGWAIVLLTLVVRIILFPLTYKGMVSMQKLKDIAPKMKEIQEKYKGDPQKLQVHMMELY 397

Query: 190 RQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGS 249
           ++ G NP+ GCLP L  +P++  +Y+ L N A E    +   WI  LS            
Sbjct: 398 KKHGANPMGGCLPLLLQMPIFFAIYRVLYN-AIELKGADWILWINDLSV----------- 445

Query: 250 GISWLLPFDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFL 309
                                Y +LP+L+  S +    L  P    DP Q+    VFKFL
Sbjct: 446 ------------------MDPYFILPILMGASMFLQQHL-TPTTFTDPMQEK---VFKFL 483

Query: 310 PLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRK 344
           PL+  +F ++ PSGL +YWF +NV S AQQ+++ K
Sbjct: 484 PLIFTFFFVTFPSGLVLYWFVSNVFSIAQQLFINK 518

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Wolinella succinogenes (taxid: 844)

>sp|Q1QH68|YIDC_NITHX Membrane protein insertase YidC OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=yidC PE=3 SV=1

 Score =  133 bits (334), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 142/278 (51%), Gaps = 30/278 (10%)

Query: 102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
           GWF FI++ M   L          HV  ++G AI+ +TV++K   FPL  +   S   M+
Sbjct: 356 GWFYFITKPMFLALDFF------FHVFGNFGIAILFVTVLIKAIFFPLANRSYASMAKMK 409

Query: 162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
            +QP+I A+++R+  ++ ++Q E   +Y++  +NP++GCLP +  IPV+  LY+ L  V 
Sbjct: 410 AVQPQIAALKERFPDDKMKLQQEMMEIYKKEKINPISGCLPMVLQIPVFFSLYKVLF-VT 468

Query: 222 NEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFD--GHPPLGWHDTAAYLVL---PV 276
            E      F WI  LS P           +  LLP+D    P LG      YL +   P+
Sbjct: 469 IEMRHAPFFAWIKDLSAPDPTHIFN----LFGLLPYDPSAVPLLG-----PYLAIGAWPI 519

Query: 277 LLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLST 336
           ++ ++ +  M+L   P   DP QK   L+F ++P++  +   + P+GL IYW  NN LS 
Sbjct: 520 IMGITMWFQMKLN--PTPPDPTQK---LIFDWMPVIFTFMLAAFPAGLVIYWAWNNTLSV 574

Query: 337 AQQVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSR 374
            QQ ++ +  G K  +  N   +      ++S  +P++
Sbjct: 575 IQQSYIMRRNGVKVELLNNVKSVFR----RKSSDKPAK 608

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Nitrobacter hamburgensis (strain X14 / DSM 10229) (taxid: 323097)

>sp|O66103|YIDC_TREPA Membrane protein insertase YidC OS=Treponema pallidum (strain Nichols) GN=yidC PE=3 SV=2

 Score =  133 bits (334), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/216 (36%), Positives = 119/216 (55%), Gaps = 17/216 (7%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY 189
           ++G AIIL+T+ +KV  FPLTK+   +   MQ LQP ++ IQ+RY GN ++I  E ++LY
Sbjct: 416 NWGVAIILVTIAIKVLFFPLTKRSFIAMQKMQELQPHMQRIQERYKGNTQKIHEEMAKLY 475

Query: 190 RQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGS 249
           R+A  NPL+GCLPTL  +P+   +Y+  +N           +WIP LS   ++       
Sbjct: 476 REAQYNPLSGCLPTLVQMPIIFAMYRLFNNYFEFRGAMFIPYWIPDLSLADSV------- 528

Query: 250 GISWLLPFDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKF- 308
              W LPF   P   W       +LPVL VVSQ    +L + P T+   QK ++ +  + 
Sbjct: 529 ---WTLPF-ALPVTQWTQMR---MLPVLYVVSQIMFSKLTQVPHTEQ--QKTSMTIMTYV 579

Query: 309 LPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRK 344
           +PL   +F    PSGL +YW   N ++  QQ+ +++
Sbjct: 580 MPLFFFFFFYDAPSGLLVYWTAMNGVTLVQQLVMKR 615

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Treponema pallidum (strain Nichols) (taxid: 243276)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	452
156530446	452	chloroplast PPF-1 [Citrus trifoliata]	0.962	0.962	0.988	0.0
449464930	453	PREDICTED: inner membrane protein PPF-1,	0.960	0.958	0.775	0.0
225434998	455	PREDICTED: inner membrane protein PPF-1,	0.966	0.960	0.809	0.0
224054791	451	inner membrane protein [Populus trichoca	0.949	0.951	0.782	0.0
255581095	449	Inner membrane protein PPF-1, chloroplas	0.942	0.948	0.785	0.0
224104461	446	inner membrane protein [Populus trichoca	0.918	0.930	0.802	1e-179
356539022	450	PREDICTED: inner membrane protein PPF-1,	0.942	0.946	0.75	1e-178
356542455	450	PREDICTED: inner membrane protein PPF-1,	0.942	0.946	0.759	1e-176
38372402	442	RecName: Full=Inner membrane protein PPF	0.926	0.947	0.747	1e-173
359478973	425	PREDICTED: inner membrane protein PPF-1,	0.900	0.957	0.744	1e-172

>gi|156530446|gb|ABU75304.1| chloroplast PPF-1 [Citrus trifoliata]

 Score =  828 bits (2139), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/437 (98%), Positives = 433/437 (99%), Gaps = 2/437 (0%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHRLPNRRLASTRVRLSFQEIPPILSLDSSIDL 60
           M KTLISSPPFVGTPLPSPSSSLSRHGLH LPNRRLASTRVRLSFQEIPPILSLDSSIDL
Sbjct: 1   MAKTLISSPPFVGTPLPSPSSSLSRHGLHPLPNRRLASTRVRLSFQEIPPILSLDSSIDL 60

Query: 61  NSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKD 120
           NSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKD
Sbjct: 61  NSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKD 120

Query: 121 GIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQER 180
           GIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQER
Sbjct: 121 GIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQER 180

Query: 181 IQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPT 240
           IQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPT
Sbjct: 181 IQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPT 240

Query: 241 TIAARQSGSGISWLLPF-DGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQ 299
           TIAARQSGSGISWLLPF DGHPPLGWHDTAAYLVLPVLLVVSQYA ME+MKPPQTDDPAQ
Sbjct: 241 TIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYA-MEIMKPPQTDDPAQ 299

Query: 300 KNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEI 359
           KNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEI
Sbjct: 300 KNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEI 359

Query: 360 ITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDVQTMNSASDSEGESDGEKGQ 419
           ITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDVQTMNSASDSEGESDGEKGQ
Sbjct: 360 ITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDVQTMNSASDSEGESDGEKGQ 419

Query: 420 GVLEEAYASNRSKQVPD 436
           GVLEEAYASNRSKQVPD
Sbjct: 420 GVLEEAYASNRSKQVPD 436

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464930|ref|XP_004150182.1| PREDICTED: inner membrane protein PPF-1, chloroplastic-like [Cucumis sativus] gi|449524424|ref|XP_004169223.1| PREDICTED: inner membrane protein PPF-1, chloroplastic-like [Cucumis sativus]

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/445 (77%), Positives = 379/445 (85%), Gaps = 11/445 (2%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRH-GLHRLPNRRLASTRVRLSFQEIPPILSLDSSID 59
           M KTLISS PFVG+ LPS    LSRH  LH LP+RR  +TRV  SF ++PP+ +  SS+D
Sbjct: 1   MAKTLISSSPFVGSSLPS----LSRHLPLHTLPHRRHLTTRVNFSFHQLPPVHTFHSSLD 56

Query: 60  LNSVFSRTESLLYTLADAAVSLDSA-SGGAASTSADGATQKNGGWFGFISEAMEFVLKIL 118
             ++ SRTE LLYTLADAAV++DS  S  A STS D A QKNGGWFGFIS+AME VLK+L
Sbjct: 57  FQAIVSRTEGLLYTLADAAVAVDSTLSAAATSTSPDTAVQKNGGWFGFISDAMEVVLKVL 116

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           K  ++AVH+PYSYGFAIILLT+IVKVATFPLTK+QVESTLAMQNLQPKIKAIQQRYAGNQ
Sbjct: 117 KGSLEAVHIPYSYGFAIILLTIIVKVATFPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQ 176

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLYRQAGVNPLAGC PTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSL G
Sbjct: 177 ERIQLETSRLYRQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLGG 236

Query: 239 PTTIAARQSGSGISWLLPF-DGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDP 297
           PTTIAARQSG+GISWLLPF DGHPPLGW DTAAYLVLPVLLV+SQY SMELMKPPQTDDP
Sbjct: 237 PTTIAARQSGAGISWLLPFVDGHPPLGWSDTAAYLVLPVLLVISQYVSMELMKPPQTDDP 296

Query: 298 AQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENAS 357
           AQKNTLL+FKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVV ENA 
Sbjct: 297 AQKNTLLIFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVNENAP 356

Query: 358 EIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDVQTMNSASDSEGESDG-- 415
            IITAGRAKR+  +  R GDRFRQ++E+EK  KL KA  +ED+QT+ S SD+E   DG  
Sbjct: 357 GIITAGRAKRT-PESERTGDRFRQVREDEKKNKLTKAARSEDIQTLASESDTEDGYDGET 415

Query: 416 -EKGQGVLEEAYASNRSKQVPDPSR 439
            EKG+  LEEAYAS+  K VP  +R
Sbjct: 416 TEKGEDGLEEAYASSADKDVPAYNR 440

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434998|ref|XP_002284077.1| PREDICTED: inner membrane protein PPF-1, chloroplastic isoform 1 [Vitis vinifera]

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/446 (80%), Positives = 391/446 (87%), Gaps = 9/446 (2%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGL-HRLPNRRLASTRVRLSFQEIPPILSLDSS-I 58
           M +TLISSPPF+G PLPS SS   RHGL H LP+RRL STRV+ S  ++PPI SLDSS I
Sbjct: 1   MARTLISSPPFIGKPLPSLSS---RHGLLHSLPHRRLISTRVKFSLHDLPPIHSLDSSSI 57

Query: 59  DLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKIL 118
           D   + SR ESLLYTLADAAVS D A+ G AS +AD A QKNGGWFGFISE ME VLK+L
Sbjct: 58  DFAGIVSRAESLLYTLADAAVSADPAAAGPASGTADAAVQKNGGWFGFISEGMEVVLKVL 117

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           +DG+ AVHVPY+YGFAIILLTVIVK+AT+PLTKKQVESTLAMQNLQPKIKAIQ+RY GNQ
Sbjct: 118 EDGLTAVHVPYAYGFAIILLTVIVKIATYPLTKKQVESTLAMQNLQPKIKAIQERYKGNQ 177

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLY+QAGVNPLAGC PTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSL G
Sbjct: 178 ERIQLETSRLYKQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLGG 237

Query: 239 PTTIAARQSGSGISWLLPF-DGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDP 297
           PTTIAARQSGSGISWL+PF DGHPPLGW DTAAYLVLPVLLV+SQY SMELMKPPQTDDP
Sbjct: 238 PTTIAARQSGSGISWLIPFVDGHPPLGWQDTAAYLVLPVLLVISQYVSMELMKPPQTDDP 297

Query: 298 AQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENAS 357
           +QKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVV E+AS
Sbjct: 298 SQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVNEDAS 357

Query: 358 EIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDVQTMNSASDSEGESDGE- 416
            IITAGRAKRS SQP+RAGDRFRQLKEEEK KK++KALPAE++Q + S SDS+  SD E 
Sbjct: 358 GIITAGRAKRSASQPARAGDRFRQLKEEEKKKKISKALPAEEIQALASESDSDEGSDEET 417

Query: 417 --KGQGVLEEAYASNRSKQVPDPSRP 440
             KG  VLEEAY S+ SKQVP  + P
Sbjct: 418 KDKGDDVLEEAYVSSGSKQVPQYAGP 443

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054791|ref|XP_002298365.1| inner membrane protein [Populus trichocarpa] gi|222845623|gb|EEE83170.1| inner membrane protein [Populus trichocarpa]

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/442 (78%), Positives = 381/442 (86%), Gaps = 13/442 (2%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHRLPNRRLASTRVRLSFQE-IPPILS-LDSSI 58
           M +TL+SSPPF+GTPLPS    LSRH L    NRR  STR++LS  + IPPI   L SS+
Sbjct: 1   MARTLLSSPPFIGTPLPS----LSRHALTT--NRRFISTRIKLSLHDNIPPIHHHLHSSV 54

Query: 59  DLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKIL 118
           D N++ SR E  LYTLADAAV++DSA+   +S +AD A QKNGGWFGFIS+ MEFVLK+L
Sbjct: 55  DFNTIISRAEGFLYTLADAAVAVDSAASTTSSDTADAA-QKNGGWFGFISDGMEFVLKVL 113

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           KDG+ +VHVPY+YGFAIILLT+ VKVAT PLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ
Sbjct: 114 KDGLSSVHVPYAYGFAIILLTIAVKVATLPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 173

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLYRQAGVNPLAGC PTLATIPVWIGLYQALSNVANEG+LTEGFFWIPSL G
Sbjct: 174 ERIQLETSRLYRQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGVLTEGFFWIPSLGG 233

Query: 239 PTTIAARQSGSGISWLLPF-DGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDP 297
           PTTIAARQSGSGISWL PF DGHPPLGWHDTAAYLVLPVLL+ SQY SME+MKPPQTDDP
Sbjct: 234 PTTIAARQSGSGISWLFPFVDGHPPLGWHDTAAYLVLPVLLIASQYVSMEIMKPPQTDDP 293

Query: 298 AQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENAS 357
            QKNTLLVFKFLP+MIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVV ENAS
Sbjct: 294 TQKNTLLVFKFLPIMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVNENAS 353

Query: 358 EIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDVQTMNSASDSEGESDGE- 416
            IITAGRAKRS SQP + GDRF+QLKE++K K L KALP E VQ ++SAS S+ +SD E 
Sbjct: 354 GIITAGRAKRSASQPGQPGDRFKQLKEQDKSKTLRKALPTEGVQALDSASGSDEDSDEET 413

Query: 417 --KGQGVLEEAYASNRSKQVPD 436
             KG+ VLEE YAS+ SK+VPD
Sbjct: 414 NDKGEEVLEETYASSASKRVPD 435

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581095|ref|XP_002531362.1| Inner membrane protein PPF-1, chloroplast precursor, putative [Ricinus communis] gi|223529022|gb|EEF31010.1| Inner membrane protein PPF-1, chloroplast precursor, putative [Ricinus communis]

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/443 (78%), Positives = 377/443 (85%), Gaps = 17/443 (3%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHR--LPNRR-LASTRVRLSFQEIPPILSLDSS 57
           M KTLISSP F+G PLPS SS   RHGL    LP+RR +++T+V+ S  EIPPI  LDS 
Sbjct: 1   MAKTLISSPSFIGAPLPSSSS---RHGLQHSLLPSRRFISTTKVKFSLHEIPPITHLDS- 56

Query: 58  IDLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKI 117
           +D NS+ SR ESLLYTLADAAV++       +S + D A QKN GWFGFISE MEFVLK+
Sbjct: 57  VDFNSIVSRAESLLYTLADAAVAV------DSSAATDTAVQKNNGWFGFISEGMEFVLKV 110

Query: 118 LKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN 177
           LKDG+ +VHVPYSYGFAIILLTVIVK+AT PLTK+QVESTLAMQNLQPKIKAIQQRYAGN
Sbjct: 111 LKDGLSSVHVPYSYGFAIILLTVIVKIATLPLTKQQVESTLAMQNLQPKIKAIQQRYAGN 170

Query: 178 QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLS 237
           QERIQLETSRLYRQAGVNPLAGC PTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSL 
Sbjct: 171 QERIQLETSRLYRQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLG 230

Query: 238 GPTTIAARQSGSGISWLLPF-DGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDD 296
           GPTTIAARQSGSGISWL PF DGHPPLGW+DTAAYLVLPVLLVVSQY SME+MKPPQTDD
Sbjct: 231 GPTTIAARQSGSGISWLFPFVDGHPPLGWYDTAAYLVLPVLLVVSQYVSMEIMKPPQTDD 290

Query: 297 PAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENA 356
           PAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWF NNVLSTAQQVWLRKLGGAKPVV +NA
Sbjct: 291 PAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFVNNVLSTAQQVWLRKLGGAKPVVDQNA 350

Query: 357 SEIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDVQTM---NSASDSEGES 413
           S IITAGRAKRS SQP R GDRFRQLKEEEK KKL KALP ++ Q +   + + +   E 
Sbjct: 351 SGIITAGRAKRSASQPQRGGDRFRQLKEEEKRKKLGKALPDDEAQALDSASDSDEESDEE 410

Query: 414 DGEKGQGVLEEAYASNRSKQVPD 436
              KG+ VLEEAYAS+ SKQVPD
Sbjct: 411 TKAKGEEVLEEAYASSSSKQVPD 433

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104461|ref|XP_002313443.1| inner membrane protein [Populus trichocarpa] gi|222849851|gb|EEE87398.1| inner membrane protein [Populus trichocarpa]

 Score =  635 bits (1639), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 345/430 (80%), Positives = 374/430 (86%), Gaps = 15/430 (3%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHRLPNRRLASTRVRLSFQE-IPPILS-LDSSI 58
           M +TL+SSPPF+ T LPS    LSRH L    NRR  STR++LS  + IPPI   LDSSI
Sbjct: 1   MARTLLSSPPFIATSLPS----LSRHTLTT--NRRFISTRIKLSLHDNIPPIHHHLDSSI 54

Query: 59  DLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKIL 118
           D NS+ SR E  LYTLADAAV++DSA   A++TS D A QK+GGWFGFIS+ MEFVLK+L
Sbjct: 55  DFNSIISRAEGFLYTLADAAVAVDSA---ASTTSTDTA-QKSGGWFGFISDGMEFVLKVL 110

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           KDG+ AVHVPY+YGFAIILLTV VKVAT PLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ
Sbjct: 111 KDGLSAVHVPYAYGFAIILLTVFVKVATLPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 170

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLYRQAGVNPLAGC PTLATIPVWIGLYQALSNVANEG+LTEGFFWIPSL G
Sbjct: 171 ERIQLETSRLYRQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGVLTEGFFWIPSLGG 230

Query: 239 PTTIAARQSGSGISWLLPF-DGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDP 297
           PTTIAARQSGSGISWL PF DGHPPLGW+DTAAYLVLPVLLVVSQY SME+MKPPQTDDP
Sbjct: 231 PTTIAARQSGSGISWLFPFVDGHPPLGWNDTAAYLVLPVLLVVSQYVSMEIMKPPQTDDP 290

Query: 298 AQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENAS 357
            QKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLR+LGGAKPVV ENAS
Sbjct: 291 TQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRQLGGAKPVVNENAS 350

Query: 358 EIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDVQTMNSASDSEG-ESDGE 416
            IITAGRAKRS +QP + GDRFR LKEEEKGKKL+KAL +EDVQ ++SASD +  E   +
Sbjct: 351 GIITAGRAKRSAAQPGQPGDRFR-LKEEEKGKKLSKALQSEDVQALDSASDEDSDEETKD 409

Query: 417 KGQGVLEEAY 426
           KG+ VLEEAY
Sbjct: 410 KGEEVLEEAY 419

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539022|ref|XP_003537999.1| PREDICTED: inner membrane protein PPF-1, chloroplastic-like [Glycine max]

 Score =  630 bits (1624), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 330/440 (75%), Positives = 364/440 (82%), Gaps = 14/440 (3%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHRLPNR-RLASTRVRLSFQEIPPILSLDSSID 59
           M KTLISS  F+GTPLPS    L RH    LP+R RL +T+V +S  EIPPI S+  +ID
Sbjct: 1   MAKTLISSQSFIGTPLPS----LPRH---HLPHRTRLVATKVLVSLHEIPPIHSISRNID 53

Query: 60  LNSVFSRTESLLYTLADAAVSLDSASGGAAST-SADGATQKNGGWFGFISEAMEFVLKIL 118
              + +R E LLYTLADAAV+ D A    ++  + D A QK+GGWFGFISEAMEFVLK+L
Sbjct: 54  FAGIVTRAEGLLYTLADAAVAADPAVAADSAASTTDAAVQKSGGWFGFISEAMEFVLKVL 113

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           KDG+ AVHVPY+YGFAIILLTVIVK AT PLTK+QVESTLAMQNLQPKIKAIQ RYAGNQ
Sbjct: 114 KDGLSAVHVPYAYGFAIILLTVIVKAATLPLTKQQVESTLAMQNLQPKIKAIQDRYAGNQ 173

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGF WIPSL G
Sbjct: 174 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFLWIPSLGG 233

Query: 239 PTTIAARQSGSGISWLLPF-DGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDP 297
           PTTIAARQSG+GISWL PF DGHPPLGW DTAAYLVLP+LLVVSQY SME+MKPPQT DP
Sbjct: 234 PTTIAARQSGAGISWLFPFVDGHPPLGWQDTAAYLVLPILLVVSQYVSMEIMKPPQT-DP 292

Query: 298 AQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENAS 357
           +QKN LL+ KFLPLMIGYFSLSVPSGL+IYWF NNVLSTAQQVWLRKLGGAKPVV ENA 
Sbjct: 293 SQKNQLLILKFLPLMIGYFSLSVPSGLTIYWFINNVLSTAQQVWLRKLGGAKPVVNENAG 352

Query: 358 EIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDVQTMNSASDSEGESDGE- 416
            IITAGRAKRS  QP R G+RF+QLKEE+K KK++KALP E+VQ + S S S+  SD E 
Sbjct: 353 GIITAGRAKRSDLQPVRNGERFKQLKEEDKKKKVSKALPVEEVQPLASVSASDDGSDTES 412

Query: 417 --KGQGVLEEAYASNRSKQV 434
             KGQ   EEAYAS   ++V
Sbjct: 413 DNKGQEDAEEAYASKVGEEV 432

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542455|ref|XP_003539682.1| PREDICTED: inner membrane protein PPF-1, chloroplastic-like [Glycine max]

 Score =  622 bits (1605), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 334/440 (75%), Positives = 365/440 (82%), Gaps = 14/440 (3%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHRLPNR-RLASTRVRLSFQEIPPILSLDSSID 59
           M KTLISSP F+GTPLPS    L RH    LP+R R  +T+V +S  EIPPI SL  SID
Sbjct: 1   MAKTLISSPSFIGTPLPS----LPRH---HLPHRTRFVTTKVHVSLHEIPPIQSLSHSID 53

Query: 60  LNSVFSRTESLLYTLADAAVSLDSASGGAASTSA-DGATQKNGGWFGFISEAMEFVLKIL 118
              + +R E LLYTLADAAV+ D A     + S  D A QK+GGWFGFISEAMEFVLK+L
Sbjct: 54  FAGIVTRAEGLLYTLADAAVAADPAVAADTAASTTDAAVQKSGGWFGFISEAMEFVLKVL 113

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           KDG+ AVHVPY+YGFAIILLTVIVK AT PLTK+QVESTLAMQNLQPKIKAIQ RYAGNQ
Sbjct: 114 KDGLSAVHVPYAYGFAIILLTVIVKAATLPLTKQQVESTLAMQNLQPKIKAIQDRYAGNQ 173

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGF WIPSL G
Sbjct: 174 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFLWIPSLGG 233

Query: 239 PTTIAARQSGSGISWLLPF-DGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDP 297
           PTTIAARQSG+GISWL PF DGHPPLGW DTAAYLVLP+LLVVSQY SME+MKPPQT DP
Sbjct: 234 PTTIAARQSGAGISWLFPFVDGHPPLGWQDTAAYLVLPILLVVSQYVSMEIMKPPQT-DP 292

Query: 298 AQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENAS 357
           +QKN LL+ KFLPLMIGYFSLSVPSGL+IYWF NNVLSTAQQVWLRKLGGAKPVV ENA 
Sbjct: 293 SQKNQLLILKFLPLMIGYFSLSVPSGLTIYWFINNVLSTAQQVWLRKLGGAKPVVNENAG 352

Query: 358 EIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDVQTMNSASDSEGESDGE- 416
            IITAGRAKRS SQ +R G+RF+QLKEEEK KK++KALP E+VQ++ S S S+  SD E 
Sbjct: 353 GIITAGRAKRSDSQLARNGERFKQLKEEEKKKKVSKALPVEEVQSLASVSASDDGSDTES 412

Query: 417 --KGQGVLEEAYASNRSKQV 434
             KGQ   EEAYAS   ++V
Sbjct: 413 DNKGQEDAEEAYASKVGEEV 432

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38372402|sp|Q9FY06.2|PPF1_PEA RecName: Full=Inner membrane protein PPF-1, chloroplastic; AltName: Full=Post-floral-specific protein 1; Flags: Precursor gi|2231046|emb|CAA73179.1| PPF-1 protein [Pisum sativum]

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 328/439 (74%), Positives = 362/439 (82%), Gaps = 20/439 (4%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHRL--PNRRLASTRVRLSFQEIPPILSLDSSI 58
           M KTLISSP F+GTPLPS         LHR   PNR    T+V+ SF ++PPI S+  S+
Sbjct: 1   MAKTLISSPSFLGTPLPS---------LHRTFSPNRTRLFTKVQFSFHQLPPIQSVSHSV 51

Query: 59  DLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKIL 118
           DL+ +F+R E LLYTLADA V+        A+ S D A QKNGGWFGFIS+ MEFVLK+L
Sbjct: 52  DLSGIFARAEGLLYTLADATVAA------DAAASTDVAAQKNGGWFGFISDGMEFVLKVL 105

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           KDG+ +VHVPYSYGFAIILLTVIVK AT PLTK+QVESTLAMQNLQPKIKAIQ+RYAGNQ
Sbjct: 106 KDGLSSVHVPYSYGFAIILLTVIVKAATLPLTKQQVESTLAMQNLQPKIKAIQERYAGNQ 165

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLY QAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGF WIPSL G
Sbjct: 166 ERIQLETSRLYTQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFLWIPSLGG 225

Query: 239 PTTIAARQSGSGISWLLPF-DGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDP 297
           PT+IAARQSGSGISWL PF DGHP LGW+DTAAYLVLPVLL+VSQY SME+MKPPQT+DP
Sbjct: 226 PTSIAARQSGSGISWLFPFVDGHPLLGWYDTAAYLVLPVLLIVSQYVSMEIMKPPQTNDP 285

Query: 298 AQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENAS 357
            QKNTLL+FKFLPLMIGYFSLSVPSGL+IYWFTNNVLSTAQQVWLRKLGGAKP V ENA 
Sbjct: 286 NQKNTLLIFKFLPLMIGYFSLSVPSGLTIYWFTNNVLSTAQQVWLRKLGGAKPAVNENAG 345

Query: 358 EIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDVQTMNSASDSEGESDGE- 416
            IITAG+AKRS S+P + G+RFRQLKEEEK KKL KALP E+VQ + SAS S   SD E 
Sbjct: 346 GIITAGQAKRSASKPEKGGERFRQLKEEEKKKKLIKALPVEEVQPLASASASNDGSDVEN 405

Query: 417 -KGQGVLEEAYASNRSKQV 434
            K Q V EE+  S  S++V
Sbjct: 406 NKEQEVTEESNTSKVSQEV 424

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478973|ref|XP_003632199.1| PREDICTED: inner membrane protein PPF-1, chloroplastic isoform 2 [Vitis vinifera]

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 332/446 (74%), Positives = 362/446 (81%), Gaps = 39/446 (8%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGL-HRLPNRRLASTRVRLSFQEIPPILSLDSS-I 58
           M +TLISSPPF+G PLPS SS   RHGL H LP+RRL STRV+ S  ++PPI SLDSS I
Sbjct: 1   MARTLISSPPFIGKPLPSLSS---RHGLLHSLPHRRLISTRVKFSLHDLPPIHSLDSSSI 57

Query: 59  DLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKIL 118
           D   + SR ESLLYTLADAAVS D A+ G AS +AD A QKNGGWFGFISE ME VLK+L
Sbjct: 58  DFAGIVSRAESLLYTLADAAVSADPAAAGPASGTADAAVQKNGGWFGFISEGMEVVLKVL 117

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           +DG+ AVHVPY+YGFAIILLTVIVK+AT+PLTKKQVESTLAMQNLQPKIKAIQ+RY GNQ
Sbjct: 118 EDGLTAVHVPYAYGFAIILLTVIVKIATYPLTKKQVESTLAMQNLQPKIKAIQERYKGNQ 177

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLY+QAGVNPLA                              GFFWIPSL G
Sbjct: 178 ERIQLETSRLYKQAGVNPLA------------------------------GFFWIPSLGG 207

Query: 239 PTTIAARQSGSGISWLLPF-DGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDP 297
           PTTIAARQSGSGISWL+PF DGHPPLGW DTAAYLVLPVLLV+SQY SMELMKPPQTDDP
Sbjct: 208 PTTIAARQSGSGISWLIPFVDGHPPLGWQDTAAYLVLPVLLVISQYVSMELMKPPQTDDP 267

Query: 298 AQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENAS 357
           +QKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVV E+AS
Sbjct: 268 SQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVNEDAS 327

Query: 358 EIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDVQTMNSASDSEGESDGE- 416
            IITAGRAKRS SQP+RAGDRFRQLKEEEK KK++KALPAE++Q + S SDS+  SD E 
Sbjct: 328 GIITAGRAKRSASQPARAGDRFRQLKEEEKKKKISKALPAEEIQALASESDSDEGSDEET 387

Query: 417 --KGQGVLEEAYASNRSKQVPDPSRP 440
             KG  VLEEAY S+ SKQVP  + P
Sbjct: 388 KDKGDDVLEEAYVSSGSKQVPQYAGP 413

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	452
TAIR|locus:2053230	462	ALB3 "ALBINO 3" [Arabidopsis t	0.884	0.865	0.651	8.8e-134
TAIR|locus:2809836	499	ALB4 "AT1G24490" [Arabidopsis	0.668	0.605	0.622	3.9e-99
UNIPROTKB|Q3AG58	223	CHY_0004 "Sporulation associat	0.283	0.573	0.379	9.9e-31
TIGR_CMR|CHY_0004	223	CHY_0004 "sporulation associat	0.283	0.573	0.379	9.9e-31
UNIPROTKB|Q71VQ8	287	yidC1 "Membrane protein insert	0.236	0.372	0.412	3.6e-27
UNIPROTKB|Q5HUK1	530	yidC "Membrane protein inserta	0.285	0.243	0.375	7.9e-27
TIGR_CMR|CJE_1038	530	CJE_1038 "inner membrane prote	0.285	0.243	0.375	7.9e-27
UNIPROTKB|Q9KVY4	541	yidC "Membrane protein inserta	0.283	0.236	0.386	8.8e-26
TIGR_CMR|VC_0004	541	VC_0004 "inner membrane protei	0.283	0.236	0.386	8.8e-26
UNIPROTKB|Q81XH4	260	yidC1 "Membrane protein insert	0.278	0.484	0.321	7e-23

TAIR|locus:2053230 ALB3 "ALBINO 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1311 (466.6 bits), Expect = 8.8e-134, P = 8.8e-134
 Identities = 266/408 (65%), Positives = 298/408 (73%)

Query:    33 NRRL--ASTRVRLSFQEXXXXXXXXXXXXXNSVFSRTESLLYXXXXXXXXXXXXXXXXXX 90
             N +L   ST VR S  E              ++F+R ESLLY                  
Sbjct:    44 NNKLFTTSTTVRFSLNEIPPFHGLDSSVDIGAIFTRAESLLYTIADAAVVGADSVVTTDS 103

Query:    91 XXXXXXXQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLT 150
                    QK+GGWFGFIS+AME VLKILKDG+ AVHVPY+YGFAIILLT+IVK AT+PLT
Sbjct:   104 SAV----QKSGGWFGFISDAMELVLKILKDGLSAVHVPYAYGFAIILLTIIVKAATYPLT 159

Query:   151 KKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVW 210
             K+QVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY+QAGVNPLAGCLPTLATIPVW
Sbjct:   160 KQQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYKQAGVNPLAGCLPTLATIPVW 219

Query:   211 IGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPF-DGHPPLGWHDTA 269
             IGLYQALSNVANEGL TEGFFWIPSL GPT+IAARQSGSGISWL PF DGHPPLGW+DT 
Sbjct:   220 IGLYQALSNVANEGLFTEGFFWIPSLGGPTSIAARQSGSGISWLFPFVDGHPPLGWYDTV 279

Query:   270 AYXXXXXXXXXSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWF 329
             AY         SQY SME+MKPPQTDDPAQKNTLLVFKFLPLMIGYF+LSVPSGLSIYW 
Sbjct:   280 AYLVLPVLLIASQYVSMEIMKPPQTDDPAQKNTLLVFKFLPLMIGYFALSVPSGLSIYWL 339

Query:   330 TNNVLSTAQQVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSRAGDRFRQXXXXXXXX 389
             TNNVLSTAQQV+LRKLGGAKP + ENAS+II+AGRAKRS++QP  AG+RFRQ        
Sbjct:   340 TNNVLSTAQQVYLRKLGGAKPNMDENASKIISAGRAKRSIAQPDDAGERFRQLKEQEKRS 399

Query:   390 XXXXXXPAEDVQTMNSAXXXXXXXXXXKGQGVLEEAYASNR-SKQVPD 436
                     + V+ +  +          + +   E A AS+  SK +P+
Sbjct:   400 KKNKAVAKDTVELVEESQSESEEGSDDEEEEAREGALASSTTSKPLPE 447

GO:0005886 "plasma membrane" evidence=ISM

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IDA

GO:0045038 "protein import into chloroplast thylakoid membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0090342 "regulation of cell aging" evidence=IMP

GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2809836 ALB4 "AT1G24490" [Arabidopsis thaliana (taxid:3702)]

 Score = 984 (351.4 bits), Expect = 3.9e-99, P = 3.9e-99
 Identities = 193/310 (62%), Positives = 234/310 (75%)

Query:    68 ESLLYXXXXXXXXXXXXXXXXXXXXXXXXXQKNGGWFGFISEAMEFVLKILKDGIDAVHV 127
             E+LLY                         Q N  WF  I+  ME +LK+LKDG+  VHV
Sbjct:    63 ENLLYTIADAAVSSSETFESVAGTTTKTT-QSND-WFSGIANYMETILKVLKDGLSTVHV 120

Query:   128 PYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSR 187
             PYSYGFAIILLTV+VK ATFPLTKKQVES +AM++L P+IKAIQ+RYAG+QE+IQLET+R
Sbjct:   121 PYSYGFAIILLTVLVKAATFPLTKKQVESAMAMKSLTPQIKAIQERYAGDQEKIQLETAR 180

Query:   188 LYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQS 247
             LY+ AG+NPLAGCLPTLATIPVWIGLY+ALSNVA+EGLLTEGFFWIPSL+GPTT+AARQ+
Sbjct:   181 LYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTVAARQN 240

Query:   248 GSGISWLLPF-DGHPPLGWHDTAAYXXXXXXXXXSQYASMELMKPPQTDDPAQKNTLLVF 306
             GSGISWL PF +GHPPLGW DT AY         SQY S+++M+  Q++DPA K++  V 
Sbjct:   241 GSGISWLFPFIEGHPPLGWPDTLAYLVLPLLLVFSQYLSIQIMQSSQSNDPAMKSSQAVT 300

Query:   307 KFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIIT----A 362
             K LPLMIGYF+LSVPSGLS+YW TNN+LSTAQQVWL+K GGAK  V E  + ++T     
Sbjct:   301 KLLPLMIGYFALSVPSGLSLYWLTNNILSTAQQVWLQKYGGAKNPV-EKFTNLVTKEDKT 359

Query:   363 GRAKRSVSQP 372
              + ++S S+P
Sbjct:   360 QQIEKSFSEP 369

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

UNIPROTKB|Q3AG58 CHY_0004 "Sporulation associated-membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 247 (92.0 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
 Identities = 49/129 (37%), Positives = 80/129 (62%)

Query:   109 EAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIK 168
             +A+ ++L  L     ++ +P SY  AII+LT+++K+  +PL   Q++S   MQ LQPK++
Sbjct:     6 DAITWILNNLYLFTKSIGIP-SYALAIIMLTILIKIILYPLNHAQMKSMKVMQELQPKMQ 64

Query:   169 AIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTE 228
              IQ++Y  + ++ Q     LY++ GVNP++GCLP L  +P+ I LY+AL N         
Sbjct:    65 EIQKKYKNDPQKQQQALMELYKEYGVNPMSGCLPMLIQLPILIALYRALYNFKYLNPAHA 124

Query:   229 GFFWIPSLS 237
              FFWI ++S
Sbjct:   125 KFFWIANIS 133

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|CHY_0004 CHY_0004 "sporulation associated-membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 247 (92.0 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
 Identities = 49/129 (37%), Positives = 80/129 (62%)

Query:   109 EAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIK 168
             +A+ ++L  L     ++ +P SY  AII+LT+++K+  +PL   Q++S   MQ LQPK++
Sbjct:     6 DAITWILNNLYLFTKSIGIP-SYALAIIMLTILIKIILYPLNHAQMKSMKVMQELQPKMQ 64

Query:   169 AIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTE 228
              IQ++Y  + ++ Q     LY++ GVNP++GCLP L  +P+ I LY+AL N         
Sbjct:    65 EIQKKYKNDPQKQQQALMELYKEYGVNPMSGCLPMLIQLPILIALYRALYNFKYLNPAHA 124

Query:   229 GFFWIPSLS 237
              FFWI ++S
Sbjct:   125 KFFWIANIS 133

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=ISS

GO:0030436 "asexual sporulation" evidence=ISS

UNIPROTKB|Q71VQ8 yidC1 "Membrane protein insertase YidC 1" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 241 (89.9 bits), Expect = 3.6e-27, Sum P(2) = 3.6e-27
 Identities = 47/114 (41%), Positives = 74/114 (64%)

Query:   130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN----QERIQLET 185
             SY   II++T+++++   PL  KQ++S  AM NLQPKIK +Q++Y+      ++++Q ET
Sbjct:    64 SYAVGIIVVTILIRLLIMPLMIKQLKSQKAMTNLQPKIKELQEKYSSKDNETKQKLQQET 123

Query:   186 SRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGP 239
              RLY++  VNP+ GCLP L  +P+ +G YQA+S  A   + T+ F W+  L  P
Sbjct:   124 MRLYQENSVNPMMGCLPLLIQMPILLGFYQAISRTAE--IKTDSFLWM-QLGNP 174

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5HUK1 yidC "Membrane protein insertase YidC" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 239 (89.2 bits), Expect = 7.9e-27, Sum P(2) = 7.9e-27
 Identities = 51/136 (37%), Positives = 82/136 (60%)

Query:   102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
             GWF FI++ M   L  L   I       ++G+AI+++T+IV++  FPLT K + S   ++
Sbjct:   313 GWFTFIAKPMFEFLNFLHQYIG------NWGWAIVVMTLIVRIILFPLTYKSMISMNKLK 366

Query:   162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
             +L PK+K I++RY G+ +++ +    LY++ G NP++GCLP L  IP++  +Y+ L N A
Sbjct:   367 DLAPKMKDIRERYKGDPQKMNMHMMELYKKHGANPMSGCLPILLQIPIFFAIYRVLLN-A 425

Query:   222 NEGLLTEGFFWIPSLS 237
              E       FWI  LS
Sbjct:   426 IELKAAPWAFWIHDLS 441

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CJE_1038 CJE_1038 "inner membrane protein, 60 kDa" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 239 (89.2 bits), Expect = 7.9e-27, Sum P(2) = 7.9e-27
 Identities = 51/136 (37%), Positives = 82/136 (60%)

Query:   102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
             GWF FI++ M   L  L   I       ++G+AI+++T+IV++  FPLT K + S   ++
Sbjct:   313 GWFTFIAKPMFEFLNFLHQYIG------NWGWAIVVMTLIVRIILFPLTYKSMISMNKLK 366

Query:   162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
             +L PK+K I++RY G+ +++ +    LY++ G NP++GCLP L  IP++  +Y+ L N A
Sbjct:   367 DLAPKMKDIRERYKGDPQKMNMHMMELYKKHGANPMSGCLPILLQIPIFFAIYRVLLN-A 425

Query:   222 NEGLLTEGFFWIPSLS 237
              E       FWI  LS
Sbjct:   426 IELKAAPWAFWIHDLS 441

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q9KVY4 yidC "Membrane protein insertase YidC" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 233 (87.1 bits), Expect = 8.8e-26, Sum P(2) = 8.8e-26
 Identities = 53/137 (38%), Positives = 81/137 (59%)

Query:   102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
             GW  FI++ + ++L +++  +       ++G AII LT IV+ A +PLTK Q  S   M+
Sbjct:   329 GWLWFIAKPLHWLLSVIQTFVG------NWGVAIICLTFIVRGAMYPLTKAQYTSMAKMR 382

Query:   162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
              LQPK++A+++R   +++R+  E   LY++  VNPL GCLP L  +P++I LY AL    
Sbjct:   383 MLQPKLQAMRERIGDDRQRMSQEMMELYKKEKVNPLGGCLPILLQMPIFIALYWALMESV 442

Query:   222 NEGLLTEGFF-WIPSLS 237
                L    FF WI  LS
Sbjct:   443 E--LRHSPFFGWIHDLS 457

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISS

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_0004 VC_0004 "inner membrane protein, 60 kDa" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 233 (87.1 bits), Expect = 8.8e-26, Sum P(2) = 8.8e-26
 Identities = 53/137 (38%), Positives = 81/137 (59%)

Query:   102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
             GW  FI++ + ++L +++  +       ++G AII LT IV+ A +PLTK Q  S   M+
Sbjct:   329 GWLWFIAKPLHWLLSVIQTFVG------NWGVAIICLTFIVRGAMYPLTKAQYTSMAKMR 382

Query:   162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
              LQPK++A+++R   +++R+  E   LY++  VNPL GCLP L  +P++I LY AL    
Sbjct:   383 MLQPKLQAMRERIGDDRQRMSQEMMELYKKEKVNPLGGCLPILLQMPIFIALYWALMESV 442

Query:   222 NEGLLTEGFF-WIPSLS 237
                L    FF WI  LS
Sbjct:   443 E--LRHSPFFGWIHDLS 457

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q81XH4 yidC1 "Membrane protein insertase YidC 1" [Bacillus anthracis (taxid:1392)]

 Score = 199 (75.1 bits), Expect = 7.0e-23, Sum P(2) = 7.0e-23
 Identities = 45/140 (32%), Positives = 76/140 (54%)

Query:   101 GGWFGFISEAMEFVLKILKDGIDAVHVP-YSYGFAIILLTVIVKVATFPLTKKQVESTLA 159
             G W  +    + F+++ +     A H+P  S+G AII++T++++ A  PL   Q  S   
Sbjct:    35 GIWDHYFVYPISFMIQFV-----AHHIPGASFGIAIIIMTLVIRSAMIPLAVSQYRSQAK 89

Query:   160 MQNLQPKIKAIQQRYAG------NQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGL 213
             M+ +QP+++ ++Q+Y         Q++ Q E S L +  G NPLAGC P L  +P++  L
Sbjct:    90 MKKMQPELQKLKQKYGDVSKDLEKQKQYQKEMSELMKSGGWNPLAGCWPLLIQMPIFSAL 149

Query:   214 YQALSNVANEGLLTEGFFWI 233
             Y A+S    E + T  F W+
Sbjct:   150 YYAISRT--EEIRTSTFLWV 167

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LBP4	ALB3_ARATH	No assigned EC number	0.7512	0.8429	0.8246	yes	no
Q9FY06	PPF1_PEA	No assigned EC number	0.7471	0.9269	0.9479	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	452
pfam02096	193	pfam02096, 60KD_IMP, 60Kd inner membrane protein	2e-72
TIGR03592	181	TIGR03592, yidC_oxa1_cterm, membrane protein inser	1e-69
PRK01318	521	PRK01318, PRK01318, membrane protein insertase; Pr	2e-58
COG0706	314	COG0706, YidC, Preprotein translocase subunit YidC	2e-49
PRK00145	223	PRK00145, PRK00145, putative inner membrane protei	7e-43
PRK01622	256	PRK01622, PRK01622, OxaA-like protein precursor; V	5e-33
PRK01001	795	PRK01001, PRK01001, putative inner membrane protei	1e-32
PRK01315	329	PRK01315, PRK01315, putative inner membrane protei	2e-31
PRK02944	255	PRK02944, PRK02944, OxaA-like protein precursor; V	6e-31
PRK03449	304	PRK03449, PRK03449, putative inner membrane protei	2e-26
PRK02654	375	PRK02654, PRK02654, putative inner membrane protei	4e-18
PRK02201	357	PRK02201, PRK02201, putative inner membrane protei	6e-15
PRK00247	429	PRK00247, PRK00247, putative inner membrane protei	2e-14
PRK02463	307	PRK02463, PRK02463, OxaA-like protein precursor; P	3e-14

>gnl|CDD|216872 pfam02096, 60KD_IMP, 60Kd inner membrane protein

 Score =  226 bits (578), Expect = 2e-72
 Identities = 79/217 (36%), Positives = 120/217 (55%), Gaps = 30/217 (13%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY 189
           ++G AIILLT++V++   PLT KQ +S   MQ LQP+IK IQ++Y  + +++Q E  +LY
Sbjct: 2   NWGLAIILLTILVRLLLLPLTLKQYKSMAKMQELQPEIKEIQEKYKDDPQKLQQEMMKLY 61

Query: 190 RQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN-EGLLTEGFFWIPSLSGPTTIAARQSG 248
           ++ GVNPLAGCLP L  +P++I LY+AL N+A    L T GF WI  LS P         
Sbjct: 62  KEHGVNPLAGCLPMLIQLPIFIALYRALRNMAELRSLETAGFLWIKDLSAP--------- 112

Query: 249 SGISWLLPFDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTL-LVFK 307
                    D            Y +LP+L  ++ +   +L       D  Q   + ++  
Sbjct: 113 ---------DPP----------YFILPILAGLTMFLQQKLSPSQDPPDLQQSAQMKIMMY 153

Query: 308 FLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRK 344
            +PL+  +F L+ P+GL +YW  +N+ S  QQ+ +RK
Sbjct: 154 IMPLIFLFFFLNFPAGLVLYWIVSNLFSLVQQLIIRK 190

Length = 193

>gnl|CDD|234272 TIGR03592, yidC_oxa1_cterm, membrane protein insertase, YidC/Oxa1 family, C-terminal domain

 Score =  218 bits (559), Expect = 1e-69
 Identities = 74/215 (34%), Positives = 111/215 (51%), Gaps = 34/215 (15%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY 189
           ++G AIILLT+IV++   PLT KQ +S   MQ LQPK+K IQ++Y  + +++Q E  +LY
Sbjct: 1   NWGLAIILLTIIVRLILLPLTLKQYKSMRKMQELQPKLKEIQEKYKDDPQKLQQEMMKLY 60

Query: 190 RQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGS 249
           ++ GVNPL GCLP L  +P++I LYQ L       L    F WI  LS P          
Sbjct: 61  KEEGVNPLGGCLPLLIQMPIFIALYQVLRRS--IELRHAPFLWIQDLSAP---------- 108

Query: 250 GISWLLPFDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFL 309
                                Y +LP+L+ V+ +   +L      D   QK  +     +
Sbjct: 109 -------------------DPYYILPILMGVTMFLQQKLSPSGPPDPAQQKIMM---YIM 146

Query: 310 PLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRK 344
           P+M  +F LS P+GL +YW  +N+ +  QQ+ + +
Sbjct: 147 PVMFLFFFLSFPAGLVLYWVVSNLFTIIQQLIINR 181

This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here [Protein fate, Protein and peptide secretion and trafficking]. Length = 181

>gnl|CDD|234942 PRK01318, PRK01318, membrane protein insertase; Provisional

 Score =  200 bits (510), Expect = 2e-58
 Identities = 82/266 (30%), Positives = 133/266 (50%), Gaps = 54/266 (20%)

Query: 102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
           GW  FI++ + ++L  L   +       ++G+AIILLT+IVK+  FPLT K   S   M+
Sbjct: 300 GWLWFITKPLFWLLDFLHSFVG------NWGWAIILLTIIVKLLLFPLTYKSYVSMAKMK 353

Query: 162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
            LQPK++ ++++Y  + +++Q E   LY++  VNPL GCLP L  IP++  LY+ L    
Sbjct: 354 VLQPKMQELKEKYKDDPQKMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVL---- 409

Query: 222 NEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFDGHPPLGW-HDTAAY--------L 272
                              +I  R +        PF     +GW HD +A          
Sbjct: 410 -----------------LVSIELRHA--------PF-----IGWIHDLSAPDPYFILHIG 439

Query: 273 VLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNN 332
           +LP+L+ ++ +   +L   P   DP Q     + KF+PL+  +F LS P+GL +YW  NN
Sbjct: 440 LLPILMGITMFLQQKLN--PTPTDPMQAK---IMKFMPLIFTFFFLSFPAGLVLYWIVNN 494

Query: 333 VLSTAQQVWLRKLGGAKPVVTENASE 358
           +L+  QQ  + +    K ++  N  +
Sbjct: 495 LLTIIQQYLINRRLEKKKLLAANKKK 520

Length = 521

>gnl|CDD|223778 COG0706, YidC, Preprotein translocase subunit YidC [Intracellular trafficking and secretion]

 Score =  170 bits (433), Expect = 2e-49
 Identities = 74/244 (30%), Positives = 114/244 (46%), Gaps = 35/244 (14%)

Query: 102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
           GWF  I   +  +L  +           ++G +IILLT+IV++  FPL++K   S   MQ
Sbjct: 86  GWFWNILAPLFPLLLFID-----SFSGLNWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQ 140

Query: 162 NLQPKIKAIQQRYAGN-QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNV 220
            LQPKIK IQ++Y G  +++ Q E  +LY++  VNPLAGCLP L  +P++I LY  L + 
Sbjct: 141 ELQPKIKEIQEKYKGTDKQKQQQEMMKLYKKHKVNPLAGCLPLLIQMPIFIALYYVLRST 200

Query: 221 ANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFDGHPPLGWHDTAAYLVLPVLLVV 280
                      WI  LS P                      P         L+LP+L  V
Sbjct: 201 VELR-GAPFLGWITDLSLPD---------------------PDYI------LLLPILAGV 232

Query: 281 SQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQV 340
           + +   +L     +     +   +    +P++  +F  + P+GL +YW  +N+ S  QQ 
Sbjct: 233 TMFLQQKLSPRNLSTPQDPQQKKM-MYIMPIIFTFFFFNFPAGLVLYWIVSNLFSILQQY 291

Query: 341 WLRK 344
            L K
Sbjct: 292 ILNK 295

Length = 314

>gnl|CDD|234665 PRK00145, PRK00145, putative inner membrane protein translocase component YidC; Provisional

 Score =  150 bits (380), Expect = 7e-43
 Identities = 72/255 (28%), Positives = 119/255 (46%), Gaps = 35/255 (13%)

Query: 104 FGFISEAMEFVLKILKDGIDAV--HVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
             +++ A     K +   + +V  +  +SYG AIIL+T+I+++   PL  KQ +S+L M 
Sbjct: 2   MRYLNNAFVQFFKFIHGFVSSVISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMN 61

Query: 162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
            +QP+IK +Q +Y  + +++Q E  +LY++ GVNPL GCLP L   P+ I LY   +N+ 
Sbjct: 62  EIQPEIKKLQAKYKNDPQKLQQEMMKLYKEKGVNPLGGCLPLLIQWPILIALYYVFNNL- 120

Query: 222 NEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFDGHPPLGWHDTAAYLVLPVLLVVS 281
             G+    F WI  L+ P                                 +LP+L   +
Sbjct: 121 -TGINGVSFLWIKDLAKP-----------------------------DITWILPILSGAT 150

Query: 282 QYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVW 341
            Y S  LM    +    Q  T+ +   + + +G  S    S L +YW   N++   Q  +
Sbjct: 151 TYLSGYLMTKADSSQAGQMKTMNI--GMSIFMGVMSWKFKSALVLYWVIGNLIQIIQTYF 208

Query: 342 LRKLGGAKPVVTENA 356
           ++KL   K V  + A
Sbjct: 209 IKKLELKKKVEAKAA 223

Length = 223

>gnl|CDD|179310 PRK01622, PRK01622, OxaA-like protein precursor; Validated

 Score =  125 bits (315), Expect = 5e-33
 Identities = 65/271 (23%), Positives = 114/271 (42%), Gaps = 51/271 (18%)

Query: 85  SGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKV 144
           SG + +   D  +  +G +  +      F+++ +     A H+  SYG AII++T+I++ 
Sbjct: 21  SGCSNAAPIDAHS--DGFFDHYFVYPFSFLIQFV-----AHHIGGSYGIAIIIVTLIIRS 73

Query: 145 ATFPLTKKQVESTLAMQN----LQPKIKAIQQRY-----AGNQERIQLETSRLYRQAGVN 195
              PL   Q +S   MQ     ++P++  IQ +         Q+  Q E   LY+   +N
Sbjct: 74  LMIPLAVSQYKSQRGMQEKMAVMKPELDKIQAKLKVTKDLEKQKEYQKEMMELYKSGNIN 133

Query: 196 PLA-GCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWL 254
           PLA GCLP L  +P+    Y A+     E + +  F W  +L                  
Sbjct: 134 PLAMGCLPLLIQMPILSAFYYAIR--RTEEIASHSFLWF-NL------------------ 172

Query: 255 LPFDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIG 314
               GH            +LP++  ++ +  M++ +   T     +   +    +P MI 
Sbjct: 173 ----GHAD---------HILPIIAGLTYFIQMKVSQSNGTSPEQVQMLKIQGIMMPAMIL 219

Query: 315 YFSLSVPSGLSIYWFTNNVLSTAQQVWLRKL 345
           + S + PS L +YW T  +    Q + LRK+
Sbjct: 220 FMSFAAPSALVLYWITGGLFLMGQTIVLRKV 250

Length = 256

>gnl|CDD|234887 PRK01001, PRK01001, putative inner membrane protein translocase component YidC; Provisional

 Score =  130 bits (329), Expect = 1e-32
 Identities = 87/282 (30%), Positives = 132/282 (46%), Gaps = 51/282 (18%)

Query: 102 GWFGFISE---AMEFVL-KILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVEST 157
           G+F FI+E   A+ F++ K  K       +  S+G +IILLTV +K+  +PL    + S 
Sbjct: 549 GFFSFITEPFAALLFIIMKFFK------FLTGSWGISIILLTVFLKLLLYPLNAWSIRSM 602

Query: 158 LAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQAL 217
             MQ L P I+ IQQ+Y    +R Q+E   LY+   VNP+ GCLP L  +P  I ++  L
Sbjct: 603 RRMQKLSPYIQEIQQKYKKEPKRAQMEIMALYKTNKVNPITGCLPLLIQLPFLIAMFDLL 662

Query: 218 SNVANEGLLTEGFF---WIPSLSGPTTIAARQSGSGISWLLPFDGHPPLGWHDTAAYLVL 274
               +  LL    F   WI +L+ P  +         SW  P        W     + +L
Sbjct: 663 K---SSFLLRGASFIPGWIDNLTAPDVL--------FSWETPI-------WFIGNEFHLL 704

Query: 275 PVLLVVSQYASMELM----KPPQTDDPAQKNTL-----LVFKFLPLMIGYFSLSVPSGLS 325
           P+LL V  +A  ++     K P TD   Q+  +     L+F F   M   F    PSGL+
Sbjct: 705 PILLGVVMFAQQKISSLKRKGPVTDQQRQQEAMGTMMALLFTF---MFYNF----PSGLN 757

Query: 326 IYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIITAGRAKR 367
           IYW ++ +L   QQ    K+  +K +     +E++   +  R
Sbjct: 758 IYWLSSMLLGVIQQWVTNKILDSKHL----KNEVVPNKKKHR 795

Length = 795

>gnl|CDD|234941 PRK01315, PRK01315, putative inner membrane protein translocase component YidC; Provisional

 Score =  122 bits (308), Expect = 2e-31
 Identities = 64/218 (29%), Positives = 113/218 (51%), Gaps = 15/218 (6%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY 189
           ++  +I+ L ++++    PL  KQ++S   MQ +QPK+K IQ++Y G++ER+  E  +LY
Sbjct: 41  TWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQEKYKGDRERMSQEMMKLY 100

Query: 190 RQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQS-- 247
           ++ G NPL+ CLP L  +P++  LY+ L + A+ G   +G   I  ++ P   + R +  
Sbjct: 101 KETGTNPLSSCLPLLLQMPIFFALYRVLDSAASRG---DG---IGPINPPLLESFRHAHI 154

Query: 248 -GSGISWLLPFDGHPPLGWHDTAAYLVLPVLLVVSQ-YASMELMK---PPQT-DDPAQKN 301
            G+ ++       +         A  VL +L+  SQ    ++LM    PP+    P  + 
Sbjct: 155 FGAPLAATFLQALNAGNTAVQVVA-AVLIILMSASQFITQLQLMTKNMPPEAKTGPMAQQ 213

Query: 302 TLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQ 339
             ++    PLM     ++ P G+  YW T+NV +  QQ
Sbjct: 214 QKMLLYLFPLMFLVSGIAFPVGVLFYWLTSNVWTMGQQ 251

Length = 329

>gnl|CDD|179508 PRK02944, PRK02944, OxaA-like protein precursor; Validated

 Score =  119 bits (299), Expect = 6e-31
 Identities = 67/232 (28%), Positives = 114/232 (49%), Gaps = 47/232 (20%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRY----AGNQERIQLET 185
           +YG AII++T+++++   PL  KQ +ST AMQ LQP+++ ++++Y       Q+++Q E 
Sbjct: 58  NYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQPEMQKLKEKYSSKDQATQQKLQQEM 117

Query: 186 SRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAAR 245
            +L+++ GVNPLAGCLP    +P+ I  Y A+   +        F W             
Sbjct: 118 MQLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMRTSEIS--KHSFLW------------- 162

Query: 246 QSGSGISWLLPFDGHPPLGWHDTAAYLVLPVLLVVSQYASMEL-MKPPQTDDPAQKNTLL 304
                      FD    LG  D   Y +LP++  ++ +   +L M      +P     L 
Sbjct: 163 -----------FD----LGQAD--PYYILPIVAGITTFIQQKLMMAGTAGQNPQMAMMLW 205

Query: 305 VFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ-------QVWLRKLGGAK 349
           +   +P+MI  F+++ P+ LS+YW   N+   AQ       ++   K GG+K
Sbjct: 206 L---MPIMILIFAINFPAALSLYWVVGNIFMIAQTYLIKGPEIKASKAGGSK 254

Length = 255

>gnl|CDD|179580 PRK03449, PRK03449, putative inner membrane protein translocase component YidC; Provisional

 Score =  108 bits (271), Expect = 2e-26
 Identities = 55/237 (23%), Positives = 110/237 (46%), Gaps = 25/237 (10%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY 189
           ++  +++ L   ++   +    +Q+ +T  MQ LQP+IKA+Q++Y  +++++ LE  +L 
Sbjct: 31  AWALSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGNDRQKMALEMQKLQ 90

Query: 190 RQAGVNPLAGCLPTLATIPVWIGLYQAL-------SNVANEGLLTEGFFWIPS-LSGPTT 241
           ++ G NP+ GCLP LA IPV++GL+  L       +     G+  E     P+ +     
Sbjct: 91  KEHGFNPILGCLPMLAQIPVFLGLFHVLRSFNRTGTGFGQLGMSVEENRNTPNYVFSAED 150

Query: 242 IA----ARQSGSGISWLLPFDGHPPLGWHDT----AAYLVLPVLLVVS------QYASME 287
           +     AR  G+ +S  +         + D        + +P++++          AS+ 
Sbjct: 151 VQSFLDARLFGAPLSAYITMPRSGLDAFVDFTRTNIILVGVPLMIIAGVATHFNSRASVA 210

Query: 288 LMKPPQTDDP--AQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWL 342
                   +P  A  N L ++   PL +      +P  + +YW +NN+ +  QQ ++
Sbjct: 211 RQSAEAAANPQTAMMNKLALW-VFPLGVLVGGPFLPLAILLYWVSNNIWTFGQQHYV 266

Length = 304

>gnl|CDD|235058 PRK02654, PRK02654, putative inner membrane protein translocase component YidC; Provisional

 Score = 85.4 bits (212), Expect = 4e-18
 Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 16/120 (13%)

Query: 105 GFISEAMEFVLKILKD---GIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
           GFIS  +  +L IL D   GI    VP SYG AI+ LT++++ A +PL+   + +   M+
Sbjct: 6   GFISNNV--MLPIL-DFFYGI----VP-SYGLAIVALTLVIRFALYPLSAGSIRNMRRMK 57

Query: 162 NLQP----KIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQAL 217
             QP    +   IQ+RY  + ++ Q E  +L ++ G NPLAGCLP L  +P+   L+  L
Sbjct: 58  IAQPVMQKRQAEIQERYKNDPQKQQEEMGKLMKEFG-NPLAGCLPLLVQMPILFALFATL 116

Length = 375

>gnl|CDD|235012 PRK02201, PRK02201, putative inner membrane protein translocase component YidC; Provisional

 Score = 75.4 bits (186), Expect = 6e-15
 Identities = 51/233 (21%), Positives = 91/233 (39%), Gaps = 60/233 (25%)

Query: 133 FAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG------NQERIQLETS 186
            AII++ +I+++ +F +T K   +    + LQ K   I  +Y         ++R Q E  
Sbjct: 135 LAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKDYKKDKQMKQRKQQEIQ 194

Query: 187 RLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQ 246
            LY++  ++P +  +    T+P++I +Y+ + +             +PS+    T     
Sbjct: 195 ELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQS-------------LPSIK--VTTWLGI 239

Query: 247 SGSGISWLLPFDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQ----------TDD 296
             S  SW   F G     W     YL + +++V  Q  S  L   PQ          T +
Sbjct: 240 DLSATSWQEIFAG----NW----IYLPILIIVVPVQALSQLL---PQILNKKKNKERTLN 288

Query: 297 PAQKNTL-----------LVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ 338
             +K  L           +VF F       F +   +G+ IYW    + +  Q
Sbjct: 289 VKEKEALKKQNKTQNIISIVFIF-------FGVIFAAGVQIYWIIGGIWTILQ 334

Length = 357

>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated

 Score = 74.1 bits (182), Expect = 2e-14
 Identities = 63/241 (26%), Positives = 104/241 (43%), Gaps = 38/241 (15%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN------QERIQL 183
           ++  ++  L + V+    P T +Q +S     +++PK KA+++ Y G       +E  Q 
Sbjct: 31  AWFASLFGLVITVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGKTDEASIRELQQK 90

Query: 184 ETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN--EGLLTEGFFWIPSLSGPTT 241
           +   L ++ G NPLAGC+P L  IPV++GLYQ L  +A    GL       I  L+    
Sbjct: 91  Q-KDLNKEYGYNPLAGCVPALIQIPVFLGLYQVLLRMARPEGGLENPVHQPIGFLTSEEV 149

Query: 242 ---IAARQSGSGISWLLP-FDGHPP-----LGW-HDTAAYLVLPVLLVVSQYA----SME 287
              +  R         LP +   P      LG    T    VLP+ +  + +     +M 
Sbjct: 150 ESFLQGRVFNVP----LPAYVSMPAEQLAYLGTTQATVLAFVLPLFIAAAVFTAINMAMS 205

Query: 288 LMKPPQTDDPAQKNTLLVFKFL----------PLMIGYFSLSVPSGLSIYWFTNNVLSTA 337
             +  QT+D      + + KFL          PL +G      P+ +++YW  NN+ +  
Sbjct: 206 TYRSFQTNDHDSGFAVGMLKFLIVMAILAPIFPLSLGLTG-PFPTAIALYWVANNLWTLI 264

Query: 338 Q 338
           Q
Sbjct: 265 Q 265

Length = 429

>gnl|CDD|235040 PRK02463, PRK02463, OxaA-like protein precursor; Provisional

 Score = 72.8 bits (179), Expect = 3e-14
 Identities = 61/251 (24%), Positives = 100/251 (39%), Gaps = 52/251 (20%)

Query: 102 GW-FGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQV-ESTL- 158
           G+ + F+   M + +        A ++   +G AII++T+IV++   PL   Q  ++T  
Sbjct: 35  GFIWNFLGAPMSYFIDYF-----ANNLGLGFGLAIIIVTIIVRLIILPLGLYQSWKATYQ 89

Query: 159 --AMQNLQPKIKAIQQRY--AGNQER---IQLETSRLYRQAGVNPLA--GCLPTLATIPV 209
              M  L+P  + I +R   A  QE     Q E     R+ G++ L   GCLP L  +P 
Sbjct: 90  SEKMAYLKPVFEPINERLKNATTQEEKMAAQTELMAAQRENGISMLGGIGCLPLLIQMPF 149

Query: 210 WIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFDGHPPLGWHDTA 269
           +  LY A      +G+ T  F  I                             LG     
Sbjct: 150 FSALYFAAQY--TKGVSTSTFLGI----------------------------DLGSPSLV 179

Query: 270 AYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWF 329
              ++ VL     + SM  +   Q +    K  + +   +P+M+  FS S P+G+ +YW 
Sbjct: 180 LTAIIGVLYFFQSWLSMMGVPEEQRE--QMKAMMYM---MPIMMVVFSFSSPAGVGLYWL 234

Query: 330 TNNVLSTAQQV 340
                S  QQ+
Sbjct: 235 VGGFFSIIQQL 245

Length = 307

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	452
PRK01001	795	putative inner membrane protein translocase compon	100.0
PRK02944	255	OxaA-like protein precursor; Validated	100.0
PRK00145	223	putative inner membrane protein translocase compon	100.0
PRK01318	521	membrane protein insertase; Provisional	100.0
PRK01315	329	putative inner membrane protein translocase compon	100.0
PRK01622	256	OxaA-like protein precursor; Validated	100.0
PRK02463	307	OxaA-like protein precursor; Provisional	100.0
TIGR03592	181	yidC_oxa1_cterm membrane protein insertase, YidC/O	100.0
PRK03449	304	putative inner membrane protein translocase compon	100.0
PRK02201	357	putative inner membrane protein translocase compon	100.0
PF02096	198	60KD_IMP: 60Kd inner membrane protein; InterPro: I	100.0
COG0706	314	YidC Preprotein translocase subunit YidC [Intracel	100.0
PRK00247	429	putative inner membrane protein translocase compon	100.0
PRK02654	375	putative inner membrane protein translocase compon	100.0
KOG1239	372	consensus Inner membrane protein translocase invol	99.92
KOG1239	372	consensus Inner membrane protein translocase invol	98.99
COG1422	201	Predicted membrane protein [Function unknown]	95.6

>PRK01001 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=1.5e-53  Score=460.11  Aligned_cols=242  Identities=31%  Similarity=0.569  Sum_probs=200.2

Q ss_pred             CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhcCHH
Q 012974          100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQE  179 (452)
Q Consensus       100 ~~gwf~~i~~p~e~vL~~l~~~l~~~glp~swg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~IqeKyk~d~e  179 (452)
                      .+|||++|+.|+.+++.++...++.+  ..+||+|||++||+||++++||+++|+++++||+.|||+|++||+|||+|++
T Consensus       547 ~~GWf~fI~~Pia~~L~~ll~~fh~l--~GnwGlAIILlTIIVRLlLlPLtiKS~kSmaKMq~LQPemqeIQeKYKdD~q  624 (795)
T PRK01001        547 FRGFFSFITEPFAALLFIIMKFFKFL--TGSWGISIILLTVFLKLLLYPLNAWSIRSMRRMQKLSPYIQEIQQKYKKEPK  624 (795)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHhh--cchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhHHHHHHHHHhHhHHH
Confidence            36999999999876665544443322  2379999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHhhhhccccCccc--cccCCcCchhHhhhccCCCcccccc-
Q 012974          180 RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF--WIPSLSGPTTIAARQSGSGISWLLP-  256 (452)
Q Consensus       180 k~q~E~~kLyKk~gvnPl~GcLP~LiQiPIfigLy~aLr~ma~~~l~~~gfl--W~~dLs~pD~i~a~~~g~~~sw~~p-  256 (452)
                      ++|+|+|+|||||||||++||+|+|+||||||++|++++++..  +...+|+  |++||+.+|++        ++|..| 
T Consensus       625 K~QqEmMkLYKe~GVNPl~GCLPmLIQmPIFfALY~vL~~sie--LRgasFLpgWI~DLSapDpl--------f~~~~~i  694 (795)
T PRK01001        625 RAQMEIMALYKTNKVNPITGCLPLLIQLPFLIAMFDLLKSSFL--LRGASFIPGWIDNLTAPDVL--------FSWETPI  694 (795)
T ss_pred             HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhHH--hcCCchhhhhHhhccCCCcc--------ccccccc
Confidence            9999999999999999999999999999999999999998754  7788897  99999999853        234333 


Q ss_pred             -CCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhH
Q 012974          257 -FDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQ--TDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNV  333 (452)
Q Consensus       257 -~~G~p~~gw~d~~py~ILPIL~~vs~~ls~~i~~~~~--~~~p~qk~mk~mm~imPlmi~~f~~~~PagL~LYWitSnl  333 (452)
                       |.|       +  ++.||||+++++||++++++....  ..++.+++++.|+++||+|+++++.++|+||+|||++||+
T Consensus       695 ~FiG-------d--~i~ILPILmgvtmflqqkls~~~~~dp~t~qq~Qqk~M~~iMPImf~f~f~~fPSGL~LYW~tSNl  765 (795)
T PRK01001        695 WFIG-------N--EFHLLPILLGVVMFAQQKISSLKRKGPVTDQQRQQEAMGTMMALLFTFMFYNFPSGLNIYWLSSML  765 (795)
T ss_pred             cccc-------c--chhHHHHHHHHHHHHHHHhcccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence             233       2  568999999999999998864321  1123344556777899999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCccccchhhhHHhhhhcc
Q 012974          334 LSTAQQVWLRKLGGAKPVVTENASEIITAGRAKR  367 (452)
Q Consensus       334 ~si~Q~~ilrk~~~~~p~~~~~~~~~~~~~~~k~  367 (452)
                      ++++||+++++.++.+.     .+++++++++|.
T Consensus       766 ~SI~QQ~iI~k~~~~kK-----i~a~ie~nkkk~  794 (795)
T PRK01001        766 LGVIQQWVTNKILDSKH-----LKNEVVPNKKKH  794 (795)
T ss_pred             HHHHHHHHHHhhcchhH-----HHHHHHhhhhcc
Confidence            99999999999744333     356677766543

>PRK02944 OxaA-like protein precursor; Validated

Probab=100.00  E-value=1.2e-52  Score=412.24  Aligned_cols=209  Identities=28%  Similarity=0.637  Sum_probs=187.2

Q ss_pred             ccCCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhcC
Q 012974           98 QKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN  177 (452)
Q Consensus        98 ~~~~gwf~~i~~p~e~vL~~l~~~l~~~glp~swg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~IqeKyk~d  177 (452)
                      +.+|.|+++|+.|++++++++|..+   |  .+||+|||++|+++|++++|++++|+++++||+++|||+++||+||++|
T Consensus        31 ~~~g~~~~~~~~p~~~~l~~i~~~~---g--~~wg~aIi~~TiivR~illPl~~~q~~~~~km~~iqPe~~~iq~kyk~~  105 (255)
T PRK02944         31 KSTGFWNEYFVYPLSQLITYFANLF---G--SNYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQPEMQKLKEKYSSK  105 (255)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHh---C--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcCC
Confidence            5667788999999999999999864   3  4699999999999999999999999999999999999999999999874


Q ss_pred             ----HHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHhhhhccccCccccccCCcCchhHhhhccCCCccc
Q 012974          178 ----QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISW  253 (452)
Q Consensus       178 ----~ek~q~E~~kLyKk~gvnPl~GcLP~LiQiPIfigLy~aLr~ma~~~l~~~gflW~~dLs~pD~i~a~~~g~~~sw  253 (452)
                          ++++|+|+++|||||||||++||+|+|+|+|||||+|++++++.+  +.++||+|+ ||+.+|             
T Consensus       106 ~~~~~~k~~~e~~~Lyk~~gvnP~~g~lp~liQ~Pifi~lf~~i~~~~~--l~~~~flW~-dLs~~D-------------  169 (255)
T PRK02944        106 DQATQQKLQQEMMQLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMRTSE--ISKHSFLWF-DLGQAD-------------  169 (255)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhHH--HhhcCCCcc-ccCcch-------------
Confidence                567899999999999999999999999999999999999998854  788999999 999876             


Q ss_pred             cccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhH
Q 012974          254 LLPFDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNV  333 (452)
Q Consensus       254 ~~p~~G~p~~gw~d~~py~ILPIL~~vs~~ls~~i~~~~~~~~p~qk~mk~mm~imPlmi~~f~~~~PagL~LYWitSnl  333 (452)
                                      ||++||+++++++++++++.....  ...+.+|+.|++++|+|+++|+.++|+|+++||++||+
T Consensus       170 ----------------p~~iLPil~~~~~~~~~~~~~~~~--~~~~~~~~~m~~i~p~~~~~~~~~~Pagl~lYw~~s~~  231 (255)
T PRK02944        170 ----------------PYYILPIVAGITTFIQQKLMMAGT--AGQNPQMAMMLWLMPIMILIFAINFPAALSLYWVVGNI  231 (255)
T ss_pred             ----------------HHHHHHHHHHHHHHHHHHhcccCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            789999999999999988753211  11223567789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 012974          334 LSTAQQVWLRKL  345 (452)
Q Consensus       334 ~si~Q~~ilrk~  345 (452)
                      |+++|++++++.
T Consensus       232 ~~i~Q~~~l~~~  243 (255)
T PRK02944        232 FMIAQTYLIKGP  243 (255)
T ss_pred             HHHHHHHHHcCc
Confidence            999999999873

>PRK00145 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=2.4e-52  Score=402.78  Aligned_cols=210  Identities=32%  Similarity=0.613  Sum_probs=186.5

Q ss_pred             hHHHHHHHHHHHHHHHhhccccC--CCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhcCHHHH
Q 012974          104 FGFISEAMEFVLKILKDGIDAVH--VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERI  181 (452)
Q Consensus       104 f~~i~~p~e~vL~~l~~~l~~~g--lp~swg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~IqeKyk~d~ek~  181 (452)
                      +++|.+++..+++++|+++..++  .+++||+||+++|+++|++++|++++|+++++||+++|||+++||+|||+|++++
T Consensus         2 ~~~i~~~~~~~l~~~~~~~~~~~~~~g~~w~~sIi~~tiivR~~l~Pl~~~q~~~~~km~~iqP~~~~i~~k~k~d~~~~   81 (223)
T PRK00145          2 MRYLNNAFVQFFKFIHGFVSSVISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMNEIQPEIKKLQAKYKNDPQKL   81 (223)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHH
Confidence            35667777777777777654331  2456999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHhhhhccccCccccccCCcCchhHhhhccCCCccccccCCCCC
Q 012974          182 QLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFDGHP  261 (452)
Q Consensus       182 q~E~~kLyKk~gvnPl~GcLP~LiQiPIfigLy~aLr~ma~~~l~~~gflW~~dLs~pD~i~a~~~g~~~sw~~p~~G~p  261 (452)
                      |+|+++|||||||||++||+|+|+|+|||+++|+++|+++.  +.++||+|++||+.+|                     
T Consensus        82 ~~e~~~Lyk~~~inp~~~~lp~liQiPif~~l~~~i~~~~~--~~~~~flW~~dLt~~D---------------------  138 (223)
T PRK00145         82 QQEMMKLYKEKGVNPLGGCLPLLIQWPILIALYYVFNNLTG--INGVSFLWIKDLAKPD---------------------  138 (223)
T ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhhh--ccCCCccChhhccCcc---------------------
Confidence            99999999999999999999999999999999999999864  7889999999999887                     


Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHH
Q 012974          262 PLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVW  341 (452)
Q Consensus       262 ~~gw~d~~py~ILPIL~~vs~~ls~~i~~~~~~~~p~qk~mk~mm~imPlmi~~f~~~~PagL~LYWitSnl~si~Q~~i  341 (452)
                              ||++||+++++++|++++.+...  +..+.+.++.|++++|+++++++.++|+||++||++||+|+++|+++
T Consensus       139 --------p~~iLPil~~~~~~l~~~~~~~~--~~~~~~~~k~m~~~~~i~~~~~~~~~Pagl~lYW~~s~~~si~Q~~~  208 (223)
T PRK00145        139 --------ITWILPILSGATTYLSGYLMTKA--DSSQAGQMKTMNIGMSIFMGVMSWKFKSALVLYWVIGNLIQIIQTYF  208 (223)
T ss_pred             --------hHHHHHHHHHHHHHHHHHHcCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    68899999999999999886543  12334467889999999999999999999999999999999999999


Q ss_pred             HHHhc
Q 012974          342 LRKLG  346 (452)
Q Consensus       342 lrk~~  346 (452)
                      ++++.
T Consensus       209 l~~~~  213 (223)
T PRK00145        209 IKKLE  213 (223)
T ss_pred             HHhhc
Confidence            99863

>PRK01318 membrane protein insertase; Provisional

Probab=100.00  E-value=2.4e-51  Score=436.96  Aligned_cols=209  Identities=38%  Similarity=0.751  Sum_probs=189.2

Q ss_pred             CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhcCHH
Q 012974          100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQE  179 (452)
Q Consensus       100 ~~gwf~~i~~p~e~vL~~l~~~l~~~glp~swg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~IqeKyk~d~e  179 (452)
                      ++||+++|+.|+.++|+++|.++   |   +||+|||++|+++|++++|++++|+++++||+.+||+|++||+||++|++
T Consensus       298 ~~G~~~~~~~pl~~~L~~i~~~~---g---~wg~aIillTiiiR~il~Pl~~~s~~s~~km~~lqP~~~~i~~kyk~d~~  371 (521)
T PRK01318        298 DYGWLWFITKPLFWLLDFLHSFV---G---NWGWAIILLTIIVKLLLFPLTYKSYVSMAKMKVLQPKMQELKEKYKDDPQ  371 (521)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHhc---c---cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhHhhHH
Confidence            58999999999999999999764   2   79999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHhhhhccccCccc-cccCCcCchhHhhhccCCCccccccCC
Q 012974          180 RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF-WIPSLSGPTTIAARQSGSGISWLLPFD  258 (452)
Q Consensus       180 k~q~E~~kLyKk~gvnPl~GcLP~LiQiPIfigLy~aLr~ma~~~l~~~gfl-W~~dLs~pD~i~a~~~g~~~sw~~p~~  258 (452)
                      ++|+|+|+|||||||||++||+|+|+|+||||++|++++++.+  +.+++|+ ||+||+.+|                  
T Consensus       372 k~~~e~~~LYKk~~vnPl~gclp~liQiPifialy~~l~~~~e--l~~~~fl~Wi~DLs~~D------------------  431 (521)
T PRK01318        372 KMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVLLVSIE--LRHAPFIGWIHDLSAPD------------------  431 (521)
T ss_pred             HHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHHHHH--hccCchheeeccccccc------------------
Confidence            9999999999999999999999999999999999999999864  7889998 999999987                  


Q ss_pred             CCCCCCcchhHHHHHH-----HHHHHHHHHHHhhhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhH
Q 012974          259 GHPPLGWHDTAAYLVL-----PVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNV  333 (452)
Q Consensus       259 G~p~~gw~d~~py~IL-----PIL~~vs~~ls~~i~~~~~~~~p~qk~mk~mm~imPlmi~~f~~~~PagL~LYWitSnl  333 (452)
                                 ||+||     ||+++++++++++++..+  .+++|   +.+|.+||+|+++|+.++|+||+|||++||+
T Consensus       432 -----------p~~il~~~~lPil~~~~~~~~~~l~~~~--~~~~q---~kim~~mpi~~~~~~~~~PagL~lYW~~sn~  495 (521)
T PRK01318        432 -----------PYFILHIGLLPILMGITMFLQQKLNPTP--TDPMQ---AKIMKFMPLIFTFFFLSFPAGLVLYWIVNNL  495 (521)
T ss_pred             -----------cchhHHHHHHHHHHHHHHHHHHHhcCCC--CCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       44555     999999999999986433  35553   3456669999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCC
Q 012974          334 LSTAQQVWLRKLGGAKP  350 (452)
Q Consensus       334 ~si~Q~~ilrk~~~~~p  350 (452)
                      ++++|++++++.++.+.
T Consensus       496 ~si~Q~~~l~~~~~~~~  512 (521)
T PRK01318        496 LTIIQQYLINRRLEKKK  512 (521)
T ss_pred             HHHHHHHHHhhhcccch
Confidence            99999999999755443

>PRK01315 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=1.7e-50  Score=408.64  Aligned_cols=240  Identities=26%  Similarity=0.449  Sum_probs=182.0

Q ss_pred             CCchHHHHHHHHHHH----HHHHhhcccc-C--CCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHH
Q 012974          101 GGWFGFISEAMEFVL----KILKDGIDAV-H--VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQR  173 (452)
Q Consensus       101 ~gwf~~i~~p~e~vL----~~l~~~l~~~-g--lp~swg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~IqeK  173 (452)
                      ++||++|++|++|++    .++|.+++.+ |  .+++||+|||++|+++|++++||+++|+++++||+++|||+++|++|
T Consensus         5 ~~~~~~i~~P~~~~l~~il~~~h~ll~~~~~~~tGl~w~~aIi~~Ti~vR~~l~Pl~i~q~~~~~km~~lqPe~~~iq~k   84 (329)
T PRK01315          5 ADFGSAIMTPLYWVISGILVLFHTLLGFLFGPDSGLTWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQEK   84 (329)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            579999999988877    4456555432 2  13469999999999999999999999999999999999999999999


Q ss_pred             hhcCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHhhhhccccCccccccCCcCchhHhhhccCCCccc
Q 012974          174 YAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISW  253 (452)
Q Consensus       174 yk~d~ek~q~E~~kLyKk~gvnPl~GcLP~LiQiPIfigLy~aLr~ma~~~l~~~gflW~~dLs~pD~i~a~~~g~~~sw  253 (452)
                      |++|++++++|+++|||||||||++||+|+|+|+||||++|++||++++. .... .+|.+++... .-.+...|     
T Consensus        85 yk~~~~~~~~e~~~Lykk~ginp~~gclp~liQ~Pif~alf~~l~~~~~~-~~~~-~~~~~~~~~s-~~~~~~fg-----  156 (329)
T PRK01315         85 YKGDRERMSQEMMKLYKETGTNPLSSCLPLLLQMPIFFALYRVLDSAASR-GDGI-GPINPPLLES-FRHAHIFG-----  156 (329)
T ss_pred             HHhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc-cccc-cchhhhHHHh-hhcccccc-----
Confidence            99999999999999999999999999999999999999999999987642 1111 2233332210 00000011     


Q ss_pred             cccCCCCC----CCCc-chhHHHHHHHHHHHHHHHHHhhh-cC----CCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhH
Q 012974          254 LLPFDGHP----PLGW-HDTAAYLVLPVLLVVSQYASMEL-MK----PPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSG  323 (452)
Q Consensus       254 ~~p~~G~p----~~gw-~d~~py~ILPIL~~vs~~ls~~i-~~----~~~~~~p~qk~mk~mm~imPlmi~~f~~~~Pag  323 (452)
                       .|+.+..    ..|+ ...+.++|||+++++++|++++. +.    +....+++.+++|.|+++||+|+++|+.++|+|
T Consensus       157 -~~L~~~f~~~~~~~~~~~~ii~~iL~il~~~~~~~~q~~~~~k~~~~~~~~~~~~~~~K~M~~imPim~~~~~~~fPaG  235 (329)
T PRK01315        157 -APLAATFLQALNAGNTAVQVVAAVLIILMSASQFITQLQLMTKNMPPEAKTGPMAQQQKMLLYLFPLMFLVSGIAFPVG  235 (329)
T ss_pred             -ccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1211100    0112 22345689999999999988653 21    122235666778889999999999999999999


Q ss_pred             hHHHHHHhhHHHHHHHHHHHHhcCCC
Q 012974          324 LSIYWFTNNVLSTAQQVWLRKLGGAK  349 (452)
Q Consensus       324 L~LYWitSnl~si~Q~~ilrk~~~~~  349 (452)
                      |+|||++||+|+++|++++.+.++.+
T Consensus       236 L~LYW~~snl~si~Qq~~v~r~~p~p  261 (329)
T PRK01315        236 VLFYWLTSNVWTMGQQFYVIRNNPTP  261 (329)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            99999999999999999977765443

>PRK01622 OxaA-like protein precursor; Validated

Probab=100.00  E-value=1.1e-50  Score=398.54  Aligned_cols=212  Identities=27%  Similarity=0.522  Sum_probs=187.5

Q ss_pred             ccCCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHH----HHHHHhccHHHHHHHHH
Q 012974           98 QKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVES----TLAMQNLQPKIKAIQQR  173 (452)
Q Consensus        98 ~~~~gwf~~i~~p~e~vL~~l~~~l~~~glp~swg~aIIllTliVRllllPL~ikq~ks----~~KM~~LqPel~~IqeK  173 (452)
                      +.+|+|.+++++|+.++++++|+.+   |.  +||+||+++|+++|++++|++++|+|+    ++||+++|||+++||+|
T Consensus        32 ~~~~~~~~~~~~p~~~ll~~l~~~~---~~--~wg~aIil~TiiiR~illPl~i~q~ks~~~~~~km~~iqP~l~~iq~k  106 (256)
T PRK01622         32 HSDGFFDHYFVYPFSFLIQFVAHHI---GG--SYGIAIIIVTLIIRSLMIPLAVSQYKSQRGMQEKMAVMKPELDKIQAK  106 (256)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHh---cc--cHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCHHHHHHHHH
Confidence            4667788999999999999999875   33  599999999999999999999999999    89999999999999999


Q ss_pred             hhc--CHH---HHHHHHHHHHHHcCCCCCC-CchHHHHHHHHHHHHHHHHHHhhhhccccCccccccCCcCchhHhhhcc
Q 012974          174 YAG--NQE---RIQLETSRLYRQAGVNPLA-GCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQS  247 (452)
Q Consensus       174 yk~--d~e---k~q~E~~kLyKk~gvnPl~-GcLP~LiQiPIfigLy~aLr~ma~~~l~~~gflW~~dLs~pD~i~a~~~  247 (452)
                      |++  |++   ++|+|+++|||||||||++ ||+|+|+|+|||+|+|+++|++.  ++.++||+|+ ||+.+|       
T Consensus       107 yk~~~d~~~~~~~~~e~~~Lyk~~gi~P~~~g~lp~liQ~Pif~~lf~~lr~~~--~l~~~~flW~-dLs~~D-------  176 (256)
T PRK01622        107 LKVTKDLEKQKEYQKEMMELYKSGNINPLAMGCLPLLIQMPILSAFYYAIRRTE--EIASHSFLWF-NLGHAD-------  176 (256)
T ss_pred             HhccCCHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHhCh--hccCCCceee-CCcchh-------
Confidence            987  443   5789999999999999999 99999999999999999999974  4889999999 898764       


Q ss_pred             CCCccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHH
Q 012974          248 GSGISWLLPFDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIY  327 (452)
Q Consensus       248 g~~~sw~~p~~G~p~~gw~d~~py~ILPIL~~vs~~ls~~i~~~~~~~~p~qk~mk~mm~imPlmi~~f~~~~PagL~LY  327 (452)
                                              +|||++++++++++++++.+......+++.++.|++++|+++++++.++|+|+++|
T Consensus       177 ------------------------~ILPil~~~~~~~~~~~~~~~~~~~~q~~~~k~m~~~~pi~~~~~~~~~Psgl~lY  232 (256)
T PRK01622        177 ------------------------HILPIIAGLTYFIQMKVSQSNGTSPEQVQMLKIQGIMMPAMILFMSFAAPSALVLY  232 (256)
T ss_pred             ------------------------HHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                    58999999999999987653322223345678899999999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHHhcCC
Q 012974          328 WFTNNVLSTAQQVWLRKLGGA  348 (452)
Q Consensus       328 WitSnl~si~Q~~ilrk~~~~  348 (452)
                      |++||+|+++|++++++.+..
T Consensus       233 W~~snl~si~Q~~~l~~~~~~  253 (256)
T PRK01622        233 WITGGLFLMGQTIVLRKVMER  253 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999997443

>PRK02463 OxaA-like protein precursor; Provisional

Probab=100.00  E-value=2.8e-50  Score=404.28  Aligned_cols=208  Identities=26%  Similarity=0.485  Sum_probs=181.1

Q ss_pred             CCCch-HHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHH----HHHHHhccHHHHHHHHHh
Q 012974          100 NGGWF-GFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVES----TLAMQNLQPKIKAIQQRY  174 (452)
Q Consensus       100 ~~gwf-~~i~~p~e~vL~~l~~~l~~~glp~swg~aIIllTliVRllllPL~ikq~ks----~~KM~~LqPel~~IqeKy  174 (452)
                      .+||+ ++++.|+.++++++|+.+   |  .+||+|||++|++||++++||+++|+++    ++||+.+|||+++||+||
T Consensus        33 ~~g~~~~~l~~p~~~~l~~i~~~~---g--~~~GlaII~~TiivRlillPL~i~q~~ka~~~~~KM~~lqPe~~~Iq~Ky  107 (307)
T PRK02463         33 PTGFIWNFLGAPMSYFIDYFANNL---G--LGFGLAIIIVTIIVRLIILPLGLYQSWKATYQSEKMAYLKPVFEPINERL  107 (307)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHc---C--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence            35665 799999999999999764   3  3699999999999999999999988865    689999999999999999


Q ss_pred             hcC-----HHHHHHHHHHHHHHcCCCCCC--CchHHHHHHHHHHHHHHHHHHhhhhccccCccccccCCcCchhHhhhcc
Q 012974          175 AGN-----QERIQLETSRLYRQAGVNPLA--GCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQS  247 (452)
Q Consensus       175 k~d-----~ek~q~E~~kLyKk~gvnPl~--GcLP~LiQiPIfigLy~aLr~ma~~~l~~~gflW~~dLs~pD~i~a~~~  247 (452)
                      |++     ++++|+|+++|||||||||++  ||+|+|+|+|||+|+|++++..  +++.+++|+|+ ||+.||       
T Consensus       108 k~~~~~~~~~~~q~em~~lyke~ginp~~~~GCLP~LIQ~PIf~aly~ai~~~--~~l~~~~flwi-dL~~p~-------  177 (307)
T PRK02463        108 KNATTQEEKMAAQTELMAAQRENGISMLGGIGCLPLLIQMPFFSALYFAAQYT--KGVSTSTFLGI-DLGSPS-------  177 (307)
T ss_pred             hcCCChHHHHHHHHHHHHHHHHcCCCCccccchHHHHHHHHHHHHHHHHHhcc--hhhccCCeeee-ecCchh-------
Confidence            863     235689999999999999998  8999999999999999999975  56889999999 887653       


Q ss_pred             CCCccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHH
Q 012974          248 GSGISWLLPFDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIY  327 (452)
Q Consensus       248 g~~~sw~~p~~G~p~~gw~d~~py~ILPIL~~vs~~ls~~i~~~~~~~~p~qk~mk~mm~imPlmi~~f~~~~PagL~LY  327 (452)
                                              ++||++++++++++++++..... +.+.++||.|+++||+|+++|++++|+||+||
T Consensus       178 ------------------------~iLpii~~v~~~~q~~~~~~~~~-~~q~~~mk~m~~~~Pim~~~~~~~~PagL~lY  232 (307)
T PRK02463        178 ------------------------LVLTAIIGVLYFFQSWLSMMGVP-EEQREQMKAMMYMMPIMMVVFSFSSPAGVGLY  232 (307)
T ss_pred             ------------------------HHHHHHHHHHHHHHHHHhccCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                    68999999999999887543222 33445688999999999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHHhcC
Q 012974          328 WFTNNVLSTAQQVWLRKLGG  347 (452)
Q Consensus       328 WitSnl~si~Q~~ilrk~~~  347 (452)
                      |++||+|+++|++++++++.
T Consensus       233 W~~snlfsi~Q~~i~~~~~~  252 (307)
T PRK02463        233 WLVGGFFSIIQQLITTYILK  252 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999998753

>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain

Probab=100.00  E-value=2.8e-49  Score=369.78  Aligned_cols=181  Identities=40%  Similarity=0.772  Sum_probs=168.2

Q ss_pred             chHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhcCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHH
Q 012974          130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPV  209 (452)
Q Consensus       130 swg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~IqeKyk~d~ek~q~E~~kLyKk~gvnPl~GcLP~LiQiPI  209 (452)
                      |||+||+++|+++|++++|++++|+++++||+++|||+++|++||++|++++++|+++|||||||||++||+|+|+|+||
T Consensus         1 ~w~~sIi~~ti~vR~~~~Pl~~~~~~~~~km~~i~P~~~~i~~k~k~~~~~~~~e~~~l~k~~~~~p~~~~lp~liQ~Pi   80 (181)
T TIGR03592         1 NWGLAIILLTIIVRLLLLPLTLKQYKSMRKMQELQPKLKEIQEKYKDDPQKLQQEMMKLYKEEGVNPLGGCLPLLIQMPI   80 (181)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhccccCccccccCCcCchhHhhhccCCCccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhc
Q 012974          210 WIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFDGHPPLGWHDTAAYLVLPVLLVVSQYASMELM  289 (452)
Q Consensus       210 figLy~aLr~ma~~~l~~~gflW~~dLs~pD~i~a~~~g~~~sw~~p~~G~p~~gw~d~~py~ILPIL~~vs~~ls~~i~  289 (452)
                      |+++|+++|++.  ++.++||+|++||+.+|                             ||++||++++++++++++++
T Consensus        81 f~~~~~~lr~~~--~l~~~~flW~~dL~~~D-----------------------------p~~iLPii~~~~~~~~~~~~  129 (181)
T TIGR03592        81 FIALYQVLRRSI--ELRHAPFLWIKDLSAPD-----------------------------PYYILPILMGATMFLQQKLS  129 (181)
T ss_pred             HHHHHHHHHhhH--HhccCCCcCccccCccc-----------------------------HHHHHHHHHHHHHHHHHHhc
Confidence            999999999975  48899999999999887                             78999999999999999986


Q ss_pred             CCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHHH
Q 012974          290 KPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRK  344 (452)
Q Consensus       290 ~~~~~~~p~qk~mk~mm~imPlmi~~f~~~~PagL~LYWitSnl~si~Q~~ilrk  344 (452)
                      ....+ +  .++++.|++++|+|+++++.++|+|+++||++||+|+++|++++++
T Consensus       130 ~~~~~-~--~~~~k~m~~~~p~~~~~~~~~~pa~l~lYw~~s~~~sl~Q~~~l~~  181 (181)
T TIGR03592       130 PSGPP-D--PAQQKIMMYIMPLMFLFFFLSFPAGLVLYWVVSNLFTIIQQLIINR  181 (181)
T ss_pred             CCCCC-C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            54322 2  2356778899999999999999999999999999999999999875

This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.

>PRK03449 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=3.9e-48  Score=387.99  Aligned_cols=234  Identities=23%  Similarity=0.400  Sum_probs=177.1

Q ss_pred             hHHHHHHHHHHHHHHHhhccc-cC--CCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhcCHHH
Q 012974          104 FGFISEAMEFVLKILKDGIDA-VH--VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQER  180 (452)
Q Consensus       104 f~~i~~p~e~vL~~l~~~l~~-~g--lp~swg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~IqeKyk~d~ek  180 (452)
                      +.++.+|+.+++.++|+++.. +|  .+.+||+|||++|+++|++++|++++|+++++||+++|||+++||+||++|+++
T Consensus         2 l~~~~~P~~~~l~~~~~~~~~~l~~~~Gl~w~~aIil~TiivR~~l~Pl~i~q~ks~~km~~lqP~l~~iq~kyk~~~~~   81 (304)
T PRK03449          2 LDFIYYPVSAILWFWHKLFSFVLGPDNGFAWALSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGNDRQK   81 (304)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHhhhhHHH
Confidence            567889999999999887643 12  133699999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHhhhh--cccc---------------------CccccccCCc
Q 012974          181 IQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANE--GLLT---------------------EGFFWIPSLS  237 (452)
Q Consensus       181 ~q~E~~kLyKk~gvnPl~GcLP~LiQiPIfigLy~aLr~ma~~--~l~~---------------------~gflW~~dLs  237 (452)
                      +++|+++|||||||||++||+|+|+|+|||+++|+++|+++..  ++..                     ++|+|..   
T Consensus        82 ~~~e~~~Lyk~~gvnP~~gclP~liQlPi~~~ly~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sFl~~~---  158 (304)
T PRK03449         82 MALEMQKLQKEHGFNPILGCLPMLAQIPVFLGLFHVLRSFNRTGTGFGQLGMSVEENRNTPNYVFSAEDVQSFLDAR---  158 (304)
T ss_pred             HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhccccccccccHHHHHHHhhhh---
Confidence            9999999999999999999999999999999999999998542  1111                     1222211   


Q ss_pred             CchhHhhhccCCCcc-ccc-cC---CCCCCCC-cchhHHHHHHHHHHHHHHHHHhhhcCCC----CCCCHHhH-HHHHHH
Q 012974          238 GPTTIAARQSGSGIS-WLL-PF---DGHPPLG-WHDTAAYLVLPVLLVVSQYASMELMKPP----QTDDPAQK-NTLLVF  306 (452)
Q Consensus       238 ~pD~i~a~~~g~~~s-w~~-p~---~G~p~~g-w~d~~py~ILPIL~~vs~~ls~~i~~~~----~~~~p~qk-~mk~mm  306 (452)
                              ..|..++ |.. +.   +....++ ++..+.+++|||++++++|++++++...    +..++.+. ++|.|+
T Consensus       159 --------~~g~pL~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Ila~v~t~~~~~~s~~~~~~~~~~~~~~~~m~k~M~  230 (304)
T PRK03449        159 --------LFGAPLSAYITMPRSGLDAFVDFTRTNIILVGVPLMIIAGVATHFNSRASVARQSAEAAANPQTAMMNKLAL  230 (304)
T ss_pred             --------hcCCChHhhhcccchhhchhcccccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcchHHHHHHHH
Confidence                    1111111 110 00   0000000 1111234678999999999998764211    11233333 447889


Q ss_pred             HHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHHHhcCC
Q 012974          307 KFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGA  348 (452)
Q Consensus       307 ~imPlmi~~f~~~~PagL~LYWitSnl~si~Q~~ilrk~~~~  348 (452)
                      ++||+|++++++++|+||.|||++||+|+++||+++++..+.
T Consensus       231 ~~mP~m~~~~~~~~Pagl~LYW~~snl~~i~Qq~~i~~~~~~  272 (304)
T PRK03449        231 WVFPLGVLVGGPFLPLAILLYWVSNNIWTFGQQHYVFGKIDK  272 (304)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            999999999999999999999999999999999999875443

>PRK02201 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=4.2e-48  Score=394.37  Aligned_cols=222  Identities=19%  Similarity=0.374  Sum_probs=182.7

Q ss_pred             CCC-chHHHHHHHHHHHHHHH--hhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhc
Q 012974          100 NGG-WFGFISEAMEFVLKILK--DGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG  176 (452)
Q Consensus       100 ~~g-wf~~i~~p~e~vL~~l~--~~l~~~glp~swg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~IqeKyk~  176 (452)
                      ++| |+++|++|+.+++.+++  ..+. ...+++||+|||++|+++|++++|++++|+++++||+++|||+++||+||++
T Consensus       100 ~~G~f~~~~v~P~~~il~~i~~~~~~~-~~~G~~w~laII~~TiivRlillPl~~k~~~s~~km~~lqPel~~Iq~Kyk~  178 (357)
T PRK02201        100 KYGPFYGLFVYPIAQIILSIMASQSLS-ELYGWSTILAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKD  178 (357)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhcccc-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence            455 67999999999999996  2221 1234569999999999999999999999999999999999999999999997


Q ss_pred             C------HHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHhhhhccccCccccccCCcCchhHhhhccCCC
Q 012974          177 N------QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSG  250 (452)
Q Consensus       177 d------~ek~q~E~~kLyKk~gvnPl~GcLP~LiQiPIfigLy~aLr~ma~~~l~~~gflW~~dLs~pD~i~a~~~g~~  250 (452)
                      |      ++++|+|+++|||||||||++||+|+|+|+|||+|+|++++.+.+  +....|+|+ ||+.+|...       
T Consensus       179 ~~~d~~~~~k~q~e~~~Lykk~ginP~~gclP~LiQ~Pif~aly~vl~~~~~--l~~~~flgi-dLs~~~~~~-------  248 (357)
T PRK02201        179 YKKDKQMKQRKQQEIQELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQSLPS--IKVTTWLGI-DLSATSWQE-------  248 (357)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhHh--hccCCCccc-ccCCCChhh-------
Confidence            6      678999999999999999999999999999999999999998754  778899999 899876210       


Q ss_pred             ccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhcC----C----C---CCCCHHhHHHHHHHHHHHHHHHHHhhh
Q 012974          251 ISWLLPFDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMK----P----P---QTDDPAQKNTLLVFKFLPLMIGYFSLS  319 (452)
Q Consensus       251 ~sw~~p~~G~p~~gw~d~~py~ILPIL~~vs~~ls~~i~~----~----~---~~~~p~qk~mk~mm~imPlmi~~f~~~  319 (452)
                         .  +        .+..+|+++++++++++++++.+++    .    .   ..++++++.++.|+++||+++++++++
T Consensus       249 ---~--~--------~~~~~~l~l~ii~~~~~~ls~~l~~~l~~kk~~~~~~~~~~~~~~k~~~~m~~impi~~~~~~~~  315 (357)
T PRK02201        249 ---I--F--------AGNWIYLPILIIVVPVQALSQLLPQILNKKKNKERTLNVKEKEALKKQNKTQNIISIVFIFFGVI  315 (357)
T ss_pred             ---h--c--------cccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence               0  0        1112567777777877777765432    1    0   111223455778999999999999999


Q ss_pred             hhhHhHHHHHHhhHHHHHHHHHHHHh
Q 012974          320 VPSGLSIYWFTNNVLSTAQQVWLRKL  345 (452)
Q Consensus       320 ~PagL~LYWitSnl~si~Q~~ilrk~  345 (452)
                      +|+||.|||++||+|+++||++++++
T Consensus       316 ~PaGL~LYW~~snl~tI~Qq~~i~~~  341 (357)
T PRK02201        316 FAAGVQIYWIIGGIWTILQTLGIHYF  341 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999985

>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes

Probab=100.00  E-value=3.5e-48  Score=364.89  Aligned_cols=193  Identities=39%  Similarity=0.730  Sum_probs=177.0

Q ss_pred             chHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhcCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHH
Q 012974          130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPV  209 (452)
Q Consensus       130 swg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~IqeKyk~d~ek~q~E~~kLyKk~gvnPl~GcLP~LiQiPI  209 (452)
                      |||+||+++|+++|++++|++++|+++++||+++|||+++|++||++|++++++|++++||||||||++||+|+|+|+||
T Consensus         2 sW~~aIil~ti~vR~~~~Pl~i~~~~~~~k~~~~~P~l~~i~~k~~~~~~~~~~~~~~l~k~~~~~p~~~~~~~liq~Pi   81 (198)
T PF02096_consen    2 SWGLAIILTTILVRLILLPLSIKQQRSSAKMQELQPELKEIQEKYKEDQQKMQQEMQKLYKKHGVNPLKGCLPPLIQIPI   81 (198)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhh-hccccCccccccCCcCchhHhhhccCCCccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhh
Q 012974          210 WIGLYQALSNVAN-EGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFDGHPPLGWHDTAAYLVLPVLLVVSQYASMEL  288 (452)
Q Consensus       210 figLy~aLr~ma~-~~l~~~gflW~~dLs~pD~i~a~~~g~~~sw~~p~~G~p~~gw~d~~py~ILPIL~~vs~~ls~~i  288 (452)
                      |+++|+++|++++ +++.++||+|++||+.+|..                        ...||++||+++++++++++++
T Consensus        82 f~~~~~~lr~~~~~~~~~~~g~lw~~dL~~~D~~------------------------~~~p~~iLPil~~~~~~~~~~~  137 (198)
T PF02096_consen   82 FIGLFRALRRMAEVPSLATGGFLWFPDLTAPDPT------------------------MGLPYFILPILAGASMFLNQEL  137 (198)
T ss_pred             HHHHHHHHHHHHHhcccccCceeChHhcCCCCcc------------------------chhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999987 67889999999999998831                        1238899999999999999998


Q ss_pred             cCC--CCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHHHhc
Q 012974          289 MKP--PQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLG  346 (452)
Q Consensus       289 ~~~--~~~~~p~qk~mk~mm~imPlmi~~f~~~~PagL~LYWitSnl~si~Q~~ilrk~~  346 (452)
                      +..  ...++.+++.+|.|++++|+++++++.++|+|+++||++||+|+++|++++|+.+
T Consensus       138 ~~~~~~~~~~~~~~~~k~m~~~~~~~~~~~~~~~Paal~lYw~~s~~~~l~Q~~~l~~~~  197 (198)
T PF02096_consen  138 SMKNSKQKSPQQAKMMKIMLYIMPLMFLFFTSFFPAALFLYWITSNLFSLLQTLILRRPF  197 (198)
T ss_pred             HHhccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            642  2233455667888999999999999999999999999999999999999999864

Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane

>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.4e-47  Score=386.25  Aligned_cols=215  Identities=36%  Similarity=0.643  Sum_probs=188.1

Q ss_pred             CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhh-cCH
Q 012974          100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYA-GNQ  178 (452)
Q Consensus       100 ~~gwf~~i~~p~e~vL~~l~~~l~~~glp~swg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~IqeKyk-~d~  178 (452)
                      +.|||.++..++..++.+++...   |+  +||++||++|++||++++|++.+|.++++||+.+||++++|||||| +|+
T Consensus        84 ~~~~f~~~~~~~~~~~~~~~~~~---g~--n~G~sIi~~ti~vRl~i~Pl~~~~~~s~~km~~lqP~~~~i~~kyk~~~~  158 (314)
T COG0706          84 DYGWFWNILAPLFPLLLFIDSFS---GL--NWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQELQPKIKEIQEKYKGTDK  158 (314)
T ss_pred             chhhHHHHHHHHHHHHHHHHHhc---Cc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHhCCCCH
Confidence            57899999988888888885433   33  7999999999999999999999999999999999999999999999 899


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHhhhhccccCccc-cccCCcCchhHhhhccCCCccccccC
Q 012974          179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF-WIPSLSGPTTIAARQSGSGISWLLPF  257 (452)
Q Consensus       179 ek~q~E~~kLyKk~gvnPl~GcLP~LiQiPIfigLy~aLr~ma~~~l~~~gfl-W~~dLs~pD~i~a~~~g~~~sw~~p~  257 (452)
                      +++|+|+|+|||||||||++||+|+|+|+|||+++|+++++..+  +...+|+ |+.||+.+|+                
T Consensus       159 ~~~q~e~~~Lyk~~~vnPl~gclP~liQ~Pifialy~~l~~~~~--l~~~~f~~w~~dl~~~dp----------------  220 (314)
T COG0706         159 QKQQQEMMKLYKKHKVNPLAGCLPLLIQMPIFIALYYVLRSTVE--LRGAPFLGWITDLSLPDP----------------  220 (314)
T ss_pred             HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHhccc--ccccchhhhhhcccCCCC----------------
Confidence            99999999999999999999999999999999999999998864  7777777 9999998762                


Q ss_pred             CCCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHH
Q 012974          258 DGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTA  337 (452)
Q Consensus       258 ~G~p~~gw~d~~py~ILPIL~~vs~~ls~~i~~~~~~~~p~qk~mk~mm~imPlmi~~f~~~~PagL~LYWitSnl~si~  337 (452)
                               +  ..+++||++++++|++++++....+ +++.++++.|+++||+++.++++++|+||.+||++||+|+++
T Consensus       221 ---------~--~~~~~pii~gv~~f~q~~ls~~~~~-~~q~~~~~~~~~impi~f~~~~~~~PaGL~LYW~~~n~fsi~  288 (314)
T COG0706         221 ---------D--YILLLPILAGVTMFLQQKLSPRNLS-TPQDPQQKKMMYIMPIIFTFFFFNFPAGLVLYWIVSNLFSIL  288 (314)
T ss_pred             ---------c--hhhHHHHHHHHHHHHHHHhccccCC-cccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHH
Confidence                     0  1236699999999999998765322 333446678899999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCC
Q 012974          338 QQVWLRKLGGAK  349 (452)
Q Consensus       338 Q~~ilrk~~~~~  349 (452)
                      ||+++++.+..+
T Consensus       289 Qq~ii~~~~~~~  300 (314)
T COG0706         289 QQYILNKPLEKK  300 (314)
T ss_pred             HHHHHhhhhhhh
Confidence            999999974443

>PRK00247 putative inner membrane protein translocase component YidC; Validated

Probab=100.00  E-value=2.1e-47  Score=396.25  Aligned_cols=251  Identities=24%  Similarity=0.373  Sum_probs=181.6

Q ss_pred             hHHHHHHHHHHHHHHHhhccc-cCCC--cchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhcC---
Q 012974          104 FGFISEAMEFVLKILKDGIDA-VHVP--YSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN---  177 (452)
Q Consensus       104 f~~i~~p~e~vL~~l~~~l~~-~glp--~swg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~IqeKyk~d---  177 (452)
                      +++|++|+.+++.++|.++.. +|++  ++||++|+++||+||++++||+++|+++++||+.+||++++||+||+++   
T Consensus         2 ~~~~~~Pvs~vm~~~h~~~~~~~G~~~~l~W~isIi~ltiiVRliLlPL~~~q~ks~~km~~lqPel~~iq~kyk~~~d~   81 (429)
T PRK00247          2 LDIFIYPVSGVMKLWHLLLHNVLGLDDSLAWFASLFGLVITVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGKTDE   81 (429)
T ss_pred             ccHHHHHHHHHHHHHHHHHhccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCCH
Confidence            568899999999999998773 5643  3499999999999999999999999999999999999999999999874   


Q ss_pred             --HHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHhhh--hccccCccccccCCcCchh---HhhhccCCC
Q 012974          178 --QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN--EGLLTEGFFWIPSLSGPTT---IAARQSGSG  250 (452)
Q Consensus       178 --~ek~q~E~~kLyKk~gvnPl~GcLP~LiQiPIfigLy~aLr~ma~--~~l~~~gflW~~dLs~pD~---i~a~~~g~~  250 (452)
                        ++++++|+++|||+|||||++||+|+|+|+|||||+|++|++|+.  +|+.+..+.|+.-|+..|.   +.+..+|..
T Consensus        82 e~~~~~qqe~~~LyKe~ginP~~gcLP~LIQiPIfigLy~vir~ma~~~~Gl~~~~~~~ig~l~~~~v~sfl~a~~fGvp  161 (429)
T PRK00247         82 ASIRELQQKQKDLNKEYGYNPLAGCVPALIQIPVFLGLYQVLLRMARPEGGLENPVHQPIGFLTSEEVESFLQGRVFNVP  161 (429)
T ss_pred             HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccccCCHHHHHHHHhccccCCC
Confidence              356889999999999999999999999999999999999999975  4555444445555555441   112223332


Q ss_pred             ccccc--cCCCCCCCCc-chhHHHHHHHHHH--HHHHHHHhhhcCC----C-CCCCH----HhHHHHHHHHHHHHHHHHH
Q 012974          251 ISWLL--PFDGHPPLGW-HDTAAYLVLPVLL--VVSQYASMELMKP----P-QTDDP----AQKNTLLVFKFLPLMIGYF  316 (452)
Q Consensus       251 ~sw~~--p~~G~p~~gw-~d~~py~ILPIL~--~vs~~ls~~i~~~----~-~~~~p----~qk~mk~mm~imPlmi~~f  316 (452)
                      ++-.+  +-++.-.+|. ...+.+++||+++  ++.+++++.+...    . ..+++    +++.|..|++++|+|++++
T Consensus       162 L~~~~sm~~e~~~~~~~~~~~v~~~ilPlii~a~vft~i~~~~s~~r~~~~~~~~~~~~~~~~k~m~~m~~~~Pim~~~~  241 (429)
T PRK00247        162 LPAYVSMPAEQLAYLGTTQATVLAFVLPLFIAAAVFTAINMAMSTYRSFQTNDHDSGFAVGMLKFLIVMAILAPIFPLSL  241 (429)
T ss_pred             cccccccchhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHhHHHHHHH
Confidence            22100  0000000111 0122356788544  4455566654321    1 11223    4455677789999999987


Q ss_pred             hhh--hhhHhHHHHHHhhHHHHHHHHH----HHHhcCCCCcccc
Q 012974          317 SLS--VPSGLSIYWFTNNVLSTAQQVW----LRKLGGAKPVVTE  354 (452)
Q Consensus       317 ~~~--~PagL~LYWitSnl~si~Q~~i----lrk~~~~~p~~~~  354 (452)
                      +++  +|+||+|||++||+|+++||++    ++++|...+.+.+
T Consensus       242 g~~~~~PaallLYWv~snlwtl~Qq~i~~~~l~~~~P~~~~~~~  285 (429)
T PRK00247        242 GLTGPFPTAIALYWVANNLWTLIQNIIMYLILERKYPLTDEFKE  285 (429)
T ss_pred             HHhccchHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCcchHH
Confidence            776  7999999999999999999994    5566655555443

>PRK02654 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=3e-38  Score=316.20  Aligned_cols=113  Identities=33%  Similarity=0.604  Sum_probs=105.3

Q ss_pred             CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHH----HHHHHhh
Q 012974          100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIK----AIQQRYA  175 (452)
Q Consensus       100 ~~gwf~~i~~p~e~vL~~l~~~l~~~glp~swg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~----~IqeKyk  175 (452)
                      |.||..+..+++.++++++|.++     + +||+|||++|++||++++||+++|+|+++||+.+||+|+    +||+||+
T Consensus         2 dfG~g~i~~~il~~iL~f~y~~v-----g-swGlAIIllTIIVRlIL~PLsikQ~KS~~KM~~LQPemqkk~~eIqeKYK   75 (375)
T PRK02654          2 DFGIGFISNNVMLPILDFFYGIV-----P-SYGLAIVALTLVIRFALYPLSAGSIRNMRRMKIAQPVMQKRQAEIQERYK   75 (375)
T ss_pred             CcchHHHHHhHHHHHHHHHHHhc-----c-hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCchhhhHHHHHHHHhc
Confidence            46886666788999999998753     3 799999999999999999999999999999999999985    7999999


Q ss_pred             cCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 012974          176 GNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN  219 (452)
Q Consensus       176 ~d~ek~q~E~~kLyKk~gvnPl~GcLP~LiQiPIfigLy~aLr~  219 (452)
                      +|++++|+|+|+|||||| ||++||+|+|+|+|||+++|++||.
T Consensus        76 dDpqk~QqEmmkLYKE~G-NPlaGCLP~LIQmPIF~aLY~~LR~  118 (375)
T PRK02654         76 NDPQKQQEEMGKLMKEFG-NPLAGCLPLLVQMPILFALFATLRG  118 (375)
T ss_pred             CCHHHHHHHHHHHHHHcC-CChhhHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999 9999999999999999999999996

>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=3.3e-24  Score=221.03  Aligned_cols=204  Identities=21%  Similarity=0.367  Sum_probs=171.4

Q ss_pred             CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhc---
Q 012974          100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG---  176 (452)
Q Consensus       100 ~~gwf~~i~~p~e~vL~~l~~~l~~~glp~swg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~IqeKyk~---  176 (452)
                      ..+|..  +.-+...+..+|...   |+|  ||.+|+..|+.+|.+++|+.+.++++.+|++.+.|+|+++.++.+.   
T Consensus        78 ~~~~~p--~~~lq~~l~~~h~~~---g~p--ww~~i~~~t~~ir~~i~~~~~~~~~~~akls~~~~~mp~~~~~l~~a~~  150 (372)
T KOG1239|consen   78 LSSWRP--VATLQNELERLHVYS---GLP--WWASIVATTVLIRSLITPLLTNSQKNEAKLSKIFPEMPSLGEELGEAAQ  150 (372)
T ss_pred             hcccCc--hhHHHHHHHHHHHHh---CCc--chHHHHHhHhhHhhhhhhHHHhhhhHHHHHhhcCcccHHHHHHHHhhhc
Confidence            345554  344566777777654   666  7899999999999999999999999999999999999999998864   


Q ss_pred             --C-HHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHhhh--hccccCccccccCCcCchhHhhhccCCCc
Q 012974          177 --N-QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN--EGLLTEGFFWIPSLSGPTTIAARQSGSGI  251 (452)
Q Consensus       177 --d-~ek~q~E~~kLyKk~gvnPl~GcLP~LiQiPIfigLy~aLr~ma~--~~l~~~gflW~~dLs~pD~i~a~~~g~~~  251 (452)
                        + ....|+|+++++++||++| .....+++|.|+|+++|.+||.|+.  +++.++|++||+||+.+|           
T Consensus       151 ~~~~~~~~q~~~~~l~~~~~v~~-~~l~~~v~q~~l~~sff~air~ma~~v~~f~t~g~~wf~dLt~~d-----------  218 (372)
T KOG1239|consen  151 DNNALLSWQEEQKLLVKKYGVKP-KQLALPVVQGPLFISFFMAIRVMAVPVPSFTTGGLLWFPDLTGPD-----------  218 (372)
T ss_pred             cccchHHHHHHHHhhhhhcCCCc-chhhhhhhcchhHHHHHHHHHHhhccccccchhhHHhcccccccC-----------
Confidence              1 2356778999999999999 9988888999999999999999985  567888999999999886           


Q ss_pred             cccccCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCCCCC-CCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHH
Q 012974          252 SWLLPFDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQT-DDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFT  330 (452)
Q Consensus       252 sw~~p~~G~p~~gw~d~~py~ILPIL~~vs~~ls~~i~~~~~~-~~p~qk~mk~mm~imPlmi~~f~~~~PagL~LYWit  330 (452)
                                        |++++|+++.+++...++++..... .+.....|+.+++++|+.++.++.++|.|+++||+ 
T Consensus       219 ------------------p~~ilp~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~t~~~~~a~~~ywl-  279 (372)
T KOG1239|consen  219 ------------------PLYILPGITLATLTLFIELGAETGLSSSKLLPAMKSFIRILPLLSLASTMQFPSAIFVYWL-  279 (372)
T ss_pred             ------------------cchhhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHhhhhhhhhhhhhhhhHHhhhh-
Confidence                              7789999999999998887654221 12344567788899999999999999999999999 


Q ss_pred             hhHHHHHHHHHHHH
Q 012974          331 NNVLSTAQQVWLRK  344 (452)
Q Consensus       331 Snl~si~Q~~ilrk  344 (452)
                         |+++|..++|.
T Consensus       280 ---~s~~~~~vlr~  290 (372)
T KOG1239|consen  280 ---FSLVQGLVLRS  290 (372)
T ss_pred             ---hHHHHHHHhHH
Confidence               99999999655

>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.99  E-value=4.2e-10  Score=116.81  Aligned_cols=238  Identities=24%  Similarity=0.241  Sum_probs=200.5

Q ss_pred             CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhcCHH
Q 012974          100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQE  179 (452)
Q Consensus       100 ~~gwf~~i~~p~e~vL~~l~~~l~~~glp~swg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~IqeKyk~d~e  179 (452)
                      .+.|+..+....+..+..++......+.++.++.++.+.|+++.+...|+...+..+..-|...+|....+...+.....
T Consensus         4 ~~~~~~~~~~~~~~~l~l~~~~~r~~s~~~~~~~~~~~~t~~~~~~~~p~~~~~~~s~~v~~~~~~~~~~~~~~~~~~~p   83 (372)
T KOG1239|consen    4 SNLWFFAISSLQEMRLFLLRPSCRSVSSPGFSGFSVFLRTILVKLTNSPLSQPEASSTSVVATVSPIIEGILLALSSWRP   83 (372)
T ss_pred             cccCchhhhhhhhHHHhhhcccccccccCCcccccccceeeccccccCCCCcCcccchHHHHhhchhHHHHHHHhcccCc
Confidence            57899999999988888888888778888889999999999999999999999999999999999999999888888655


Q ss_pred             --HHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHhhhhccccCccccccCCcCchhHhhhccCCCccccccC
Q 012974          180 --RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPF  257 (452)
Q Consensus       180 --k~q~E~~kLyKk~gvnPl~GcLP~LiQiPIfigLy~aLr~ma~~~l~~~gflW~~dLs~pD~i~a~~~g~~~sw~~p~  257 (452)
                        .+|.++.++|+-.|++.+++|+...+-++.+++.|.+.+. .++...+.++.|++.+...-..++.+.+.++.|..+.
T Consensus        84 ~~~lq~~l~~~h~~~g~pww~~i~~~t~~ir~~i~~~~~~~~-~~~akls~~~~~mp~~~~~l~~a~~~~~~~~~~q~~~  162 (372)
T KOG1239|consen   84 VATLQNELERLHVYSGLPWWASIVATTVLIRSLITPLLTNSQ-KNEAKLSKIFPEMPSLGEELGEAAQDNNALLSWQEEQ  162 (372)
T ss_pred             hhHHHHHHHHHHHHhCCcchHHHHHhHhhHhhhhhhHHHhhh-hHHHHHhhcCcccHHHHHHHHhhhccccchHHHHHHH
Confidence              8999999999999999999999999999999999999987 5555667889999988887767777777778888876


Q ss_pred             -CCCCCCCcc-hhHHHHHHHHHHHHHHHHHhhhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHH
Q 012974          258 -DGHPPLGWH-DTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLS  335 (452)
Q Consensus       258 -~G~p~~gw~-d~~py~ILPIL~~vs~~ls~~i~~~~~~~~p~qk~mk~mm~imPlmi~~f~~~~PagL~LYWitSnl~s  335 (452)
                       +++...||. +...+.+++..+.++.|+.++.|..+..+.+.+     ....+|-+..+.-...+.++..||+++++..
T Consensus       163 ~~l~~~~~v~~~~l~~~v~q~~l~~sff~air~ma~~v~~f~t~-----g~~wf~dLt~~dp~~ilp~it~~~~~~~~~~  237 (372)
T KOG1239|consen  163 KLLVKKYGVKPKQLALPVVQGPLFISFFMAIRVMAVPVPSFTTG-----GLLWFPDLTGPDPLYILPGITLATLTLFIEL  237 (372)
T ss_pred             HhhhhhcCCCcchhhhhhhcchhHHHHHHHHHHhhccccccchh-----hHHhcccccccCcchhhHHHHHHHHHHHHHH
Confidence             666666777 666777888888889999988876443323322     4456677777788888999999999999999


Q ss_pred             HHHHHHHH
Q 012974          336 TAQQVWLR  343 (452)
Q Consensus       336 i~Q~~ilr  343 (452)
                      -.|+....
T Consensus       238 ~~~~~~~~  245 (372)
T KOG1239|consen  238 GAETGLSS  245 (372)
T ss_pred             HHHhhhhc
Confidence            99987765

>COG1422 Predicted membrane protein [Function unknown]

Probab=95.60  E-value=0.07  Score=51.44  Aligned_cols=88  Identities=17%  Similarity=0.199  Sum_probs=48.2

Q ss_pred             hHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhc-----CH---HHHHHHHHHHHHHcCCCCCC-Cch
Q 012974          131 YGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG-----NQ---ERIQLETSRLYRQAGVNPLA-GCL  201 (452)
Q Consensus       131 wg~aIIllTliVRllllPL~ikq~ks~~KM~~LqPel~~IqeKyk~-----d~---ek~q~E~~kLyKk~gvnPl~-GcL  201 (452)
                      .-++|+++.+++=+.+-=+ -+-..-..||+++|-+++|.||++++     |.   +|+|+++++...... ..++ .+-
T Consensus        46 p~lvilV~avi~gl~~~i~-~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~-elmk~qfk  123 (201)
T COG1422          46 PHLVILVAAVITGLYITIL-QKLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQR-ELMKMQFK  123 (201)
T ss_pred             cHHHHHHHHHHHHHHHHHH-HHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-HHHHHhhh
Confidence            4567777666665433222 23344567999999999999998853     43   344443332221110 0011 234


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 012974          202 PTLATIPVWIGLYQALSNV  220 (452)
Q Consensus       202 P~LiQiPIfigLy~aLr~m  220 (452)
                      ||+.++++.|-+|-=++..
T Consensus       124 PM~~~~v~tI~~F~Wl~~~  142 (201)
T COG1422         124 PMLYISVLTIPFFAWLRWF  142 (201)
T ss_pred             hHHHHHHHHHHHHHHHHHH
Confidence            7776666666665555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	452
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 4e-04
 Identities = 53/351 (15%), Positives = 99/351 (28%), Gaps = 118/351 (33%)

Query: 129 YSYGFAI-ILLTVIVK------VATFP---LTKKQVESTLAMQN-----------LQPKI 167
           Y Y   + +     V       V   P   L+K++++  +  ++           L  K 
Sbjct: 16  YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75

Query: 168 KAIQQRYAGNQ---------ERIQLET------SRLYRQAGVNPLAGCLPTLATIPVW-- 210
           + + Q++               I+ E       +R+Y +   + L       A   V   
Sbjct: 76  EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ-RDRLYNDNQVFAKYNVSRL 134

Query: 211 ---IGLYQALSNV-ANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWL-------LPFDG 259
              + L QAL  +   + +L +G                  GSG +W+            
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDG----------------VLGSGKTWVALDVCLSYKVQC 178

Query: 260 HPPLG--WHDTAAYLVLPVLLVVSQYASME-LMKPPQT----DDPAQKNTLLVFKFLPLM 312
                  W            L +    S E +++  Q      DP   +       + L 
Sbjct: 179 KMDFKIFW------------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 313 IGYFSLSVPSGLSIYWFTNN------VLSTAQQVWLRKL-----GGAKPVVT---ENASE 358
           I     S+ + L     +        VL     V   K         K ++T   +  ++
Sbjct: 227 IH----SIQAELRRLLKSKPYENCLLVLL---NVQNAKAWNAFNLSCKILLTTRFKQVTD 279

Query: 359 IITAGRAKRSVSQPSRAGDRFRQLKEEEK----GKKLN---KALPAEDVQT 402
            ++A                   L  +E      K L+   + LP E + T
Sbjct: 280 FLSAATTTHISLDHHSMT-----LTPDEVKSLLLKYLDCRPQDLPREVLTT 325

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00